Query 031785
Match_columns 153
No_of_seqs 124 out of 1032
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 08:07:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031785.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031785hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2zjrt1 b.84.4.1 (T:2-85) Ribo 100.0 2.1E-46 1.5E-50 270.1 8.0 84 45-129 1-84 (84)
2 d2gycu1 b.84.4.1 (U:1-84) Ribo 100.0 1.5E-47 1.1E-51 276.0 -3.2 84 45-128 1-84 (84)
3 d1v8qa_ b.84.4.1 (A:) Ribosoma 100.0 2.3E-36 1.7E-40 209.2 6.6 65 63-128 1-65 (66)
4 d2ba0a2 b.84.4.2 (A:2-52) Exos 96.1 0.004 2.9E-07 39.1 4.5 49 72-130 2-50 (51)
5 d2je6i2 b.84.4.2 (I:7-65) Exos 92.4 0.11 8.2E-06 33.2 5.0 54 68-130 5-59 (59)
6 d2nn6h2 b.84.4.2 (H:25-72) Rib 89.2 0.15 1.1E-05 31.7 3.2 47 72-127 1-47 (48)
7 d2nn6i2 b.84.4.2 (I:6-60) Exos 88.8 0.04 2.9E-06 35.1 0.2 50 73-126 2-51 (55)
8 d1ci3m2 b.84.2.2 (M:170-231) C 71.3 1.8 0.00013 26.7 3.2 30 102-132 2-33 (62)
9 d1dcza_ b.84.1.1 (A:) Biotin c 45.3 7.1 0.00051 24.6 2.7 40 62-111 18-57 (77)
10 d1e2wa2 b.84.2.2 (A:169-232) C 45.0 4.3 0.00031 25.3 1.5 31 101-131 1-34 (64)
11 d2oz6a2 b.82.3.2 (A:9-142) Cyc 31.5 56 0.0041 20.4 5.8 36 73-120 16-51 (134)
12 d2nn6g2 b.84.4.2 (G:16-106) Ri 30.5 12 0.00091 25.4 2.1 16 99-114 59-74 (91)
13 d1qpoa2 d.41.2.1 (A:2-116) Qui 28.0 13 0.00094 24.9 1.8 18 68-85 77-94 (115)
14 d1qwya_ b.84.3.2 (A:) Peptidog 27.3 37 0.0027 26.2 4.7 44 83-126 160-204 (270)
15 d2gpra_ b.84.3.1 (A:) Glucose 25.1 16 0.0012 26.2 2.0 24 91-114 35-59 (154)
16 d1i5za2 b.82.3.2 (A:6-137) Cat 23.5 76 0.0056 19.3 6.7 38 73-122 17-54 (132)
17 d2f3ga_ b.84.3.1 (A:) Glucose- 21.7 20 0.0015 25.4 2.0 17 98-114 37-53 (150)
18 d1k8ma_ b.84.1.1 (A:) Lipoyl d 20.3 21 0.0016 22.9 1.7 41 61-111 19-59 (87)
No 1
>d2zjrt1 b.84.4.1 (T:2-85) Ribosomal protein L27 {Deinococcus radiodurans [TaxId: 1299]}
Probab=100.00 E-value=2.1e-46 Score=270.11 Aligned_cols=84 Identities=58% Similarity=0.967 Sum_probs=81.5
Q ss_pred eeecccccCCCCCCCCCcccceeeeCCeEeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEEEEEecCCCceEEE
Q 031785 45 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVH 124 (153)
Q Consensus 45 A~KK~~GStkNGRdS~~KrLGvK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~f~~~~~~~rk~V~ 124 (153)
||||++|||+|||||+|||||||+++||+|.||+||||||||+||||+||||||||||||+++|+|+|++. .++|+||+
T Consensus 1 A~KK~~GSt~NgrdS~~krlGvK~~~Gq~V~~G~IivRQRGtk~hpG~nVg~GkD~TLfA~~~G~V~F~k~-~~~rk~V~ 79 (84)
T d2zjrt1 1 AHKKGVGSSKNGRDSNPKYLGVKKFGGEVVKAGNILVRQRGTKFKAGQGVGMGRDHTLFALSDGKVVFINK-GKGARFIS 79 (84)
T ss_dssp CCSSCSSCSSCCCCCCCCCCCCSSCTTCEECSSCEEECCSSSSSEECTTEECCTTSCEEESSCEEEEEEEE-TTTEEEEE
T ss_pred CCccccCCCCCCCCCCCccceEEECCCEEEeCCcEEEEecCceEcCCCCccccCCCcEEEeeceEEEEEEc-CCCCEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999997 46899999
Q ss_pred eEeCC
Q 031785 125 VEPKE 129 (153)
Q Consensus 125 V~p~~ 129 (153)
|+|.|
T Consensus 80 V~p~e 84 (84)
T d2zjrt1 80 IEAAQ 84 (84)
T ss_dssp ECCCC
T ss_pred EEeCC
Confidence 99975
No 2
>d2gycu1 b.84.4.1 (U:1-84) Ribosomal protein L27 {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=1.5e-47 Score=276.02 Aligned_cols=84 Identities=58% Similarity=0.991 Sum_probs=81.1
Q ss_pred eeecccccCCCCCCCCCcccceeeeCCeEeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEEEEEecCCCceEEE
Q 031785 45 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVH 124 (153)
Q Consensus 45 A~KK~~GStkNGRdS~~KrLGvK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~f~~~~~~~rk~V~ 124 (153)
||||++|||+|||||+|||||||+|+||+|.||+||||||||+||||+||||||||||||+++|+|+|+++..++|+||+
T Consensus 1 A~KK~~GSs~NgrdS~~krLGvK~~~Gq~V~~G~IivRQRGtk~hPG~nVg~GkD~TLfAl~~G~V~F~~~~~~~r~~V~ 80 (84)
T d2gycu1 1 AHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFAKADGKVKFEVKGPKNRKFIS 80 (84)
T ss_dssp CCCCSCCSCCCCCCCCCBCCCCSSSCCCSSCCSBSSCCCCCCSSCCCCCSSSCCCCCCCCCSCCCCSSSSSSCSCCCCCC
T ss_pred CCccccccCCCCCCCCCccceeEEcCCEEEcCCcEEEEeccceEcCCCCeeecCCCeEEEeccEEEEEEEcCCCCCEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999987667899999
Q ss_pred eEeC
Q 031785 125 VEPK 128 (153)
Q Consensus 125 V~p~ 128 (153)
|+||
T Consensus 81 V~~e 84 (84)
T d2gycu1 81 IEAE 84 (84)
T ss_dssp SSCC
T ss_pred EEeC
Confidence 9875
No 3
>d1v8qa_ b.84.4.1 (A:) Ribosomal protein L27 {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=2.3e-36 Score=209.17 Aligned_cols=65 Identities=54% Similarity=0.945 Sum_probs=62.5
Q ss_pred ccceeeeCCeEeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEEEEEecCCCceEEEeEeC
Q 031785 63 NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPK 128 (153)
Q Consensus 63 rLGvK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~f~~~~~~~rk~V~V~p~ 128 (153)
|||+|+++||+|.||+||||||||+||||+||||||||||||+++|+|+|++.. ++|+||+|+|.
T Consensus 1 RLGvK~~~Gq~V~~G~IivRQRGtk~~pG~nVg~GkD~TLfAl~~G~V~F~~~~-~~~~~VsV~P~ 65 (66)
T d1v8qa_ 1 RLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFALVDGVVEFQDRG-RLGRYVHVRPL 65 (66)
T ss_dssp CCEECSCTTCEECTTCEEEECSSCSSEECTTEEECTTCCEEESSSEEEEEEECG-GGCEEEEEEEC
T ss_pred CCccEEeCCEEEeCCeEEEEeccCeEeCCCCeeecCCCcEEEeeeeEEEEEEeC-CCCeEEEEEEC
Confidence 799999999999999999999999999999999999999999999999999874 68999999996
No 4
>d2ba0a2 b.84.4.2 (A:2-52) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=96.08 E-value=0.004 Score=39.12 Aligned_cols=49 Identities=22% Similarity=0.302 Sum_probs=40.1
Q ss_pred eEeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEEEEEecCCCceEEEeEeCCC
Q 031785 72 ERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEG 130 (153)
Q Consensus 72 q~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~f~~~~~~~rk~V~V~p~~~ 130 (153)
+.|.||++|.- + .|.||.|+.+ .|..|+|.+-|.|... -+.|+|.|..+
T Consensus 2 ~iV~PGe~i~~--~-~~~~G~Gty~-~~~~i~ss~~G~v~~~------n~~i~V~PL~g 50 (51)
T d2ba0a2 2 KIVLPGDLLST--N-PRAAGYGTYV-EGGKVYAKIIGLFDQT------ETHVRVIPLKG 50 (51)
T ss_dssp CEECTTCEEES--C-TTSBCTTEEE-ETTEEEECSSEEEEEC------SSCEEEEECSS
T ss_pred CEEcCCcEeec--C-CeeCCCCcEE-ECCEEEEEEEEEEEEE------CCEEEEEeCcc
Confidence 57999999975 4 4999999998 6789999999999753 34699998753
No 5
>d2je6i2 b.84.4.2 (I:7-65) Exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=92.41 E-value=0.11 Score=33.17 Aligned_cols=54 Identities=19% Similarity=0.156 Sum_probs=38.7
Q ss_pred eeCCeEeecCcEEeecccCeEeCCCCeeee-ccceEEEeeceEEEEEEecCCCceEEEeEeCCC
Q 031785 68 KFGGERVIPGNIIVRQRGTRFHPGDYVGMG-KDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEG 130 (153)
Q Consensus 68 ~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~G-rD~TLfAl~~G~V~f~~~~~~~rk~V~V~p~~~ 130 (153)
.-+-+.|.||++|.. |..|. +.|.+.= .|..|||.+-|.|....+ .|+|.|.++
T Consensus 5 v~~r~iV~PGdvi~~--~~~~~-~~g~~ty~~~~ki~asv~G~v~~~nk------li~ViPL~G 59 (59)
T d2je6i2 5 LQPRSIVVPGELLAE--GEFQI-PWSPYILKINSKYYSTVVGLFDVKDT------QFEVIPLEG 59 (59)
T ss_dssp CCSSCEECTTCEEEE--ECCCC-CCCTTEEEETTEEEECSSEEEEEETT------EEEEEESCC
T ss_pred EcCCeEECCCcEeee--CCccc-cCCCEEEecCCEEEEEEEEEEEEECC------EEEEEECCC
Confidence 346689999999985 44444 3344432 458899999999998733 589998753
No 6
>d2nn6h2 b.84.4.2 (H:25-72) Ribosomal RNA-processing protein 4, RRP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=89.19 E-value=0.15 Score=31.70 Aligned_cols=47 Identities=32% Similarity=0.475 Sum_probs=37.7
Q ss_pred eEeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEEEEEecCCCceEEEeEe
Q 031785 72 ERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 127 (153)
Q Consensus 72 q~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~f~~~~~~~rk~V~V~p 127 (153)
+.|.||+.|-.+-| |.+|-+..+- |..|+|.+.|.|+-. -|.|+|.|
T Consensus 1 ~iv~PGe~It~~~~--~mrGHGTy~~-~~~i~aSv~G~verv------NKLvsV~p 47 (48)
T d2nn6h2 1 HLVVPGDTITTDTG--FMRGHGTYMG-EEKLIASVAGSVERV------NKLICVKA 47 (48)
T ss_dssp CBCCTTCBCCCCTT--CCBCTTEEEC-SSSEEECSSEEEEEE------TTEEEEEE
T ss_pred CEecCCcEeecCCC--eEcccccEec-CCEEEEEEeeeEEEe------ccEEEEEc
Confidence 35889999987765 8999999984 889999999999433 35688877
No 7
>d2nn6i2 b.84.4.2 (I:6-60) Exosome component 1, EXOSC1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=88.83 E-value=0.04 Score=35.11 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=38.1
Q ss_pred EeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEEEEEecCCCceEEEeE
Q 031785 73 RVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 126 (153)
Q Consensus 73 ~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~f~~~~~~~rk~V~V~ 126 (153)
++.||+.|-.- -.|-||.|+.. ++..|||...|.|....+ .+....|+|.
T Consensus 2 ~~lPGe~L~~~--eey~~G~gTy~-~~g~I~as~~G~v~id~~-~~~isVisV~ 51 (55)
T d2nn6i2 2 YCIPGERLCNL--EEGSPGSGTYT-RHGYIFSSLAGCLMKSSE-NGALPVVSVV 51 (55)
T ss_dssp CCCTTCEEEET--TTCCCSSSCEE-ETTEEECCSCSCBCCCBC-TTSSBC-CBC
T ss_pred cccCCcEEeeh--heecCCCCeEE-cCCEEEEEeeEEEEEecC-CCEeeEEEEE
Confidence 67899999886 45889999976 568899999999998654 3445555554
No 8
>d1ci3m2 b.84.2.2 (M:170-231) Cytochrome f, small domain {Phormidium laminosum [TaxId: 32059]}
Probab=71.35 E-value=1.8 Score=26.74 Aligned_cols=30 Identities=23% Similarity=0.404 Sum_probs=22.9
Q ss_pred EE-EeeceEE-EEEEecCCCceEEEeEeCCCCc
Q 031785 102 LY-ALKEGRV-KFEKHKLSGRKWVHVEPKEGHV 132 (153)
Q Consensus 102 Lf-Al~~G~V-~f~~~~~~~rk~V~V~p~~~~~ 132 (153)
+| |.++|.| .|.++ .+..+.|.|.++++++
T Consensus 2 v~~A~~~G~V~~i~~~-~~g~~~I~I~~~~G~~ 33 (62)
T d1ci3m2 2 VYNASAAGVITAIAKA-DDGSAEVKIRTEDGTT 33 (62)
T ss_dssp CCBCSSCEEEEEEEEC-TTSCEEEEEECTTSCE
T ss_pred eEeCccCEEEEEeEec-cCCCEEEEEECCCCCE
Confidence 35 9999999 47776 3567889999887653
No 9
>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
Probab=45.34 E-value=7.1 Score=24.57 Aligned_cols=40 Identities=15% Similarity=0.282 Sum_probs=30.2
Q ss_pred cccceeeeCCeEeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEE
Q 031785 62 KNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVK 111 (153)
Q Consensus 62 KrLGvK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~ 111 (153)
+=.=|..-.||+|.+|++|+.---.|- .+.|.|+++|.|+
T Consensus 18 ~v~~~~V~~Gd~V~~G~~l~~vE~~K~----------~~~i~ap~~G~V~ 57 (77)
T d1dcza_ 18 TVSKILVKEGDTVKAGQTVLVLEAMKM----------ETEINAPTDGKVE 57 (77)
T ss_dssp EEEEECCCTTCEECTTSEEEEEEETTE----------EEEEECSSSEEEE
T ss_pred EEEEEEcCCCCEEeCCCeEEEEEccCc----------cEEEEeCCCEEEE
Confidence 344477889999999999986544332 3569999999996
No 10
>d1e2wa2 b.84.2.2 (A:169-232) Cytochrome f, small domain {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=45.02 E-value=4.3 Score=25.31 Aligned_cols=31 Identities=26% Similarity=0.392 Sum_probs=21.8
Q ss_pred eEE-EeeceEEE-EEEe-cCCCceEEEeEeCCCC
Q 031785 101 TLY-ALKEGRVK-FEKH-KLSGRKWVHVEPKEGH 131 (153)
Q Consensus 101 TLf-Al~~G~V~-f~~~-~~~~rk~V~V~p~~~~ 131 (153)
||| |...|.|. .+.. ..+..+.|.|.++.++
T Consensus 1 ~~~na~~aG~Vs~I~~~~~~kg~~~I~I~~~dGe 34 (64)
T d1e2wa2 1 TIYNASAAGKIVAITALSEKKGGFEVSIEKANGE 34 (64)
T ss_dssp SCCBCSSCEEEEEEEESSSSSCCEEEEEECTTSC
T ss_pred CeecCcCCEEEEEEEeecccCCcEEEEEECCCCC
Confidence 678 99999994 4432 2345677889887765
No 11
>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]}
Probab=31.47 E-value=56 Score=20.42 Aligned_cols=36 Identities=28% Similarity=0.415 Sum_probs=24.2
Q ss_pred EeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEEEEEecCCCc
Q 031785 73 RVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGR 120 (153)
Q Consensus 73 ~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~f~~~~~~~r 120 (153)
...+|++|++| |+ ..+.+|=+.+|.|+.+.....++
T Consensus 16 ~~~~g~~i~~~-------g~-----~~~~~y~i~~G~v~v~~~~~~g~ 51 (134)
T d2oz6a2 16 RYTAKSTIIYA-------GD-----RCETLFFIIKGSVTILIEDDDGR 51 (134)
T ss_dssp EECTTCEEECT-------TS-----BCCEEEEEEESEEEEEEECTTSC
T ss_pred EECCCCEEEeC-------CC-----cCCEEEEEEEcccceeeeecccc
Confidence 34566666543 43 34789999999999887643333
No 12
>d2nn6g2 b.84.4.2 (G:16-106) Ribosomal RNA-processing protein 40, RRP40 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.52 E-value=12 Score=25.41 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=14.3
Q ss_pred cceEEEeeceEEEEEE
Q 031785 99 DHTLYALKEGRVKFEK 114 (153)
Q Consensus 99 D~TLfAl~~G~V~f~~ 114 (153)
+.+|+|...|..++.+
T Consensus 59 ~d~v~atKaG~LR~k~ 74 (91)
T d2nn6g2 59 GDRLLVTKCGRLRHKE 74 (91)
T ss_dssp CCCEEECSCCEEEEEC
T ss_pred CCEEEEeecceeeecC
Confidence 5889999999999876
No 13
>d1qpoa2 d.41.2.1 (A:2-116) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=27.97 E-value=13 Score=24.90 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=15.9
Q ss_pred eeCCeEeecCcEEeeccc
Q 031785 68 KFGGERVIPGNIIVRQRG 85 (153)
Q Consensus 68 ~~~Gq~V~~G~IIvRQRG 85 (153)
+-||+.|.+|++|.+=+|
T Consensus 77 ~~DG~~v~~G~~I~~i~G 94 (115)
T d1qpoa2 77 VEDGARVPPGEALMTLEA 94 (115)
T ss_dssp CCTTCEECTTCEEEEEEE
T ss_pred cCCCCEEecceeEEEEec
Confidence 559999999999998776
No 14
>d1qwya_ b.84.3.2 (A:) Peptidoglycan hydrolase LytM {Staphylococcus aureus [TaxId: 1280]}
Probab=27.27 E-value=37 Score=26.16 Aligned_cols=44 Identities=23% Similarity=0.305 Sum_probs=31.6
Q ss_pred cccCeEeCCCCeeeeccceEEEeeceEEEEEEecC-CCceEEEeE
Q 031785 83 QRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKL-SGRKWVHVE 126 (153)
Q Consensus 83 QRGtkfhPG~NVg~GrD~TLfAl~~G~V~f~~~~~-~~rk~V~V~ 126 (153)
.||-.+|.|.-+..-....++|..+|+|.|..... ..-.+|-|.
T Consensus 160 ~r~g~~H~GIDi~a~~GtpV~A~~dG~V~~ag~~~~g~G~~V~I~ 204 (270)
T d1qwya_ 160 YHGGGAHYGVDYAMPENSPVYSLTDGTVVQAGWSNYGGGNQVTIK 204 (270)
T ss_dssp CTTSSEECSEEEECCTTCEEECSSSEEEEEEEEETTTTEEEEEEE
T ss_pred CCCCCceEeEEeCCCCCCeEEeeeCEEEEEEEEccCCCCeEEEEE
Confidence 47778999887777666789999999999886422 233455444
No 15
>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]}
Probab=25.06 E-value=16 Score=26.19 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=17.1
Q ss_pred CCCeeee-ccceEEEeeceEEEEEE
Q 031785 91 GDYVGMG-KDHTLYALKEGRVKFEK 114 (153)
Q Consensus 91 G~NVg~G-rD~TLfAl~~G~V~f~~ 114 (153)
|+++.|= .|.++||+++|.|.+-.
T Consensus 35 G~G~aI~P~~~~v~AP~dG~I~~i~ 59 (154)
T d2gpra_ 35 GDGFAINPKSNDFHAPVSGKLVTAF 59 (154)
T ss_dssp CEEEEEEESSSEEECSSCEEEEECC
T ss_pred cCeEEEEecCCEEEEecCeEEEEEC
Confidence 3444433 46789999999998753
No 16
>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=23.54 E-value=76 Score=19.33 Aligned_cols=38 Identities=24% Similarity=0.417 Sum_probs=25.7
Q ss_pred EeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEEEEEecCCCceE
Q 031785 73 RVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKW 122 (153)
Q Consensus 73 ~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~f~~~~~~~rk~ 122 (153)
.+.+|++|++| |+ ..+.+|-+.+|.|+.+.....++..
T Consensus 17 ~~~~g~~i~~~-------g~-----~~~~iy~i~~G~v~~~~~~~~g~e~ 54 (132)
T d1i5za2 17 KYPSKSTLIHQ-------GE-----KAETLYYIVKGSVAVLIKDEEGKEM 54 (132)
T ss_dssp EECTTCEEECT-------TS-----BCCEEEEEEECCEEEEEECTTCCEE
T ss_pred EECcCCEEEcC-------CC-----CCCEEEEEEEccceeeeccccchhh
Confidence 45677777655 33 4578999999999988654334433
No 17
>d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII) {Escherichia coli [TaxId: 562]}
Probab=21.72 E-value=20 Score=25.43 Aligned_cols=17 Identities=12% Similarity=0.069 Sum_probs=14.1
Q ss_pred ccceEEEeeceEEEEEE
Q 031785 98 KDHTLYALKEGRVKFEK 114 (153)
Q Consensus 98 rD~TLfAl~~G~V~f~~ 114 (153)
.|.++||+++|.|..-.
T Consensus 37 ~~~~v~AP~dG~V~~v~ 53 (150)
T d2f3ga_ 37 TGNKMVAPVDGTIGKIF 53 (150)
T ss_dssp CSSEEECSSSEEEEEEC
T ss_pred CCCeEEeecCEEEEEEC
Confidence 45789999999998753
No 18
>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.35 E-value=21 Score=22.91 Aligned_cols=41 Identities=15% Similarity=0.050 Sum_probs=29.8
Q ss_pred CcccceeeeCCeEeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEE
Q 031785 61 PKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVK 111 (153)
Q Consensus 61 ~KrLGvK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~ 111 (153)
++=.-|.+-.|+.|.+|++|+.---.|- .+.+.|..+|.|.
T Consensus 19 g~i~~w~v~~Gd~V~~g~~l~~vEt~K~----------~~~v~A~~~G~I~ 59 (87)
T d1k8ma_ 19 VTVKEWYVKEGDTVSQFDSICEVQSDKA----------SVTITSRYDGVIK 59 (87)
T ss_dssp EEEEEECCCTTCEECSSSCCEEEECSSC----------EEECCCSSCEEEE
T ss_pred EEEEEEEcCCCCEEecCCEEEEEEccCc----------eEEEEeCCCEEEE
Confidence 3445577788999999999886443332 2679999999986
Done!