BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031786
         (153 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2PY2|A Chain A, Structure Of Herring Type Ii Antifreeze Protein
 pdb|2PY2|B Chain B, Structure Of Herring Type Ii Antifreeze Protein
 pdb|2PY2|C Chain C, Structure Of Herring Type Ii Antifreeze Protein
 pdb|2PY2|D Chain D, Structure Of Herring Type Ii Antifreeze Protein
 pdb|2PY2|E Chain E, Structure Of Herring Type Ii Antifreeze Protein
 pdb|2PY2|F Chain F, Structure Of Herring Type Ii Antifreeze Protein
          Length = 136

 Score = 29.6 bits (65), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 8/71 (11%)

Query: 71  RRFMSNNNYFYWALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKV 130
           R F+ N    +WA  +E      A L  + + E+  FVKE        A++   +P W  
Sbjct: 14  RCFLFNPLQLHWADAQESCMKEGANLASIHSLEESTFVKELTS-----ADL---IPSWIG 65

Query: 131 GENVYNSGRWM 141
           G +   S RW 
Sbjct: 66  GTDCQVSTRWF 76


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.135    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,059,307
Number of Sequences: 62578
Number of extensions: 192807
Number of successful extensions: 423
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 419
Number of HSP's gapped (non-prelim): 8
length of query: 153
length of database: 14,973,337
effective HSP length: 90
effective length of query: 63
effective length of database: 9,341,317
effective search space: 588502971
effective search space used: 588502971
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)