BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031786
(153 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O49313|NDADB_ARATH NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B
OS=Arabidopsis thaliana GN=At2g33220 PE=2 SV=1
Length = 143
Score = 256 bits (653), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 127/153 (83%), Positives = 136/153 (88%), Gaps = 10/153 (6%)
Query: 1 MTEAMIRKKPGMASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYG 60
MTEAMIRKKPGMASVKDMP+LQDGPPPGGFAPVRYARRI GPSAMA+FL GAF++G
Sbjct: 1 MTEAMIRKKPGMASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAIFLTVSGAFAWG 60
Query: 61 MYQVGKGNKIRRFMSNNNYFYWALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAE 120
MYQVG+GNKIRR ALKEEKYAARRAILP+LQAEEDERFV EWKKYLEYEA+
Sbjct: 61 MYQVGQGNKIRR----------ALKEEKYAARRAILPILQAEEDERFVSEWKKYLEYEAD 110
Query: 121 VMKDVPGWKVGENVYNSGRWMPPASGELRPEVW 153
VMKDVPGWKVGENVYNSGRWMPPA+GELRP+VW
Sbjct: 111 VMKDVPGWKVGENVYNSGRWMPPATGELRPDVW 143
>sp|Q8RWA7|NDADA_ARATH NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-A
OS=Arabidopsis thaliana GN=MEE4 PE=2 SV=1
Length = 143
Score = 254 bits (648), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 126/153 (82%), Positives = 135/153 (88%), Gaps = 10/153 (6%)
Query: 1 MTEAMIRKKPGMASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYG 60
MTEAMIR KPGMASVKDMP+LQDGPPPGGFAPVRYARRI GPSAMA+FLA GAF++G
Sbjct: 1 MTEAMIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAMFLAVSGAFAWG 60
Query: 61 MYQVGKGNKIRRFMSNNNYFYWALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAE 120
MYQVG+GNKIRR ALKEEKYAARR ILP+LQAEEDERFV EWKKYLEYEA+
Sbjct: 61 MYQVGQGNKIRR----------ALKEEKYAARRTILPILQAEEDERFVSEWKKYLEYEAD 110
Query: 121 VMKDVPGWKVGENVYNSGRWMPPASGELRPEVW 153
VMKDVPGWKVGENVYNSGRWMPPA+GELRP+VW
Sbjct: 111 VMKDVPGWKVGENVYNSGRWMPPATGELRPDVW 143
>sp|Q9P0J0|NDUAD_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13
OS=Homo sapiens GN=NDUFA13 PE=1 SV=3
Length = 144
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 79/129 (61%), Gaps = 10/129 (7%)
Query: 20 VLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRFMSNNNY 79
V QD PPPGG+ P+ Y R +P +G S ++ G YG + + K N+ RR
Sbjct: 6 VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYGHWSIMKWNRERR------- 58
Query: 80 FYWALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGR 139
L+ E + AR A+LP+LQAE D R ++ ++ LE EA +MKDVP WKVGE+V+++ R
Sbjct: 59 ---RLQIEDFEARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTR 115
Query: 140 WMPPASGEL 148
W+PP GEL
Sbjct: 116 WVPPLIGEL 124
>sp|Q0MQ90|NDUAD_PANTR NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13
OS=Pan troglodytes GN=NDUFA13 PE=2 SV=3
Length = 144
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 79/129 (61%), Gaps = 10/129 (7%)
Query: 20 VLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRFMSNNNY 79
V QD PPPGG+ P+ Y R +P +G S ++ G YG + + K N+ RR
Sbjct: 6 VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYGHWSIMKWNRERR------- 58
Query: 80 FYWALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGR 139
L+ E + AR A+LP+LQAE D R ++ ++ LE EA +MKDVP WKVGE+V+++ R
Sbjct: 59 ---RLQIEDFEARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTR 115
Query: 140 WMPPASGEL 148
W+PP GEL
Sbjct: 116 WVPPLIGEL 124
>sp|Q0MQ89|NDUAD_GORGO NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13
OS=Gorilla gorilla gorilla GN=NDUFA13 PE=2 SV=3
Length = 144
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 79/129 (61%), Gaps = 10/129 (7%)
Query: 20 VLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRFMSNNNY 79
V QD PPPGG+ P+ Y R +P +G S ++ G YG + + K N+ RR
Sbjct: 6 VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYGHWSIMKWNRERR------- 58
Query: 80 FYWALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGR 139
L+ E + AR A+LP+LQAE D R ++ ++ LE EA +MKDVP WKVGE+V+++ R
Sbjct: 59 ---RLQIEDFEARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTR 115
Query: 140 WMPPASGEL 148
W+PP GEL
Sbjct: 116 WVPPLIGEL 124
>sp|Q4R6H1|NDUAD_MACFA NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13
OS=Macaca fascicularis GN=NDUFA13 PE=2 SV=1
Length = 163
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 82/136 (60%), Gaps = 10/136 (7%)
Query: 13 ASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRR 72
AS++ V QD PPPGG+ P+ Y R +P +G S ++ G YG + + K N+ RR
Sbjct: 18 ASMEMPKVKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLVYGHWSIMKWNRERR 77
Query: 73 FMSNNNYFYWALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGE 132
L+ E + AR A++P+ QAE D R ++ ++ LE EA +MKDVP WKVGE
Sbjct: 78 ----------RLQIEDFEARIALMPLFQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGE 127
Query: 133 NVYNSGRWMPPASGEL 148
+V+++ RW+PP GEL
Sbjct: 128 SVFHTTRWVPPLIGEL 143
>sp|Q95KV7|NDUAD_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13
OS=Bos taurus GN=NDUFA13 PE=1 SV=3
Length = 144
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 81/129 (62%), Gaps = 10/129 (7%)
Query: 20 VLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRFMSNNNY 79
V QD PP GG+ P+ Y R +P +G S ++F GA +G + + K N+ RR
Sbjct: 6 VKQDMPPVGGYGPIDYKRNLPRRGLSGYSMFAVGIGALLFGYWSMMKWNRERR------- 58
Query: 80 FYWALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGR 139
L+ E + AR A++P+LQAE+D R ++ ++ LE EA VMKDVPGWKVGE+V+++ R
Sbjct: 59 ---RLQIEDFEARIALMPLLQAEKDRRVLQMLRENLEEEATVMKDVPGWKVGESVFHTTR 115
Query: 140 WMPPASGEL 148
W+ P GEL
Sbjct: 116 WVTPMMGEL 124
>sp|Q0MQ88|NDUAD_PONPY NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13
OS=Pongo pygmaeus GN=NDUFA13 PE=2 SV=3
Length = 144
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 78/129 (60%), Gaps = 10/129 (7%)
Query: 20 VLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRFMSNNNY 79
V QD PPPGG+ P+ Y R +P +G S ++ G YG + + K N+ RR
Sbjct: 6 VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLALGIGTLIYGHWSMMKWNRERR------- 58
Query: 80 FYWALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGR 139
L+ E + AR A+LP+LQAE D R ++ ++ LE EA +MKDVP WKVGE+V+++ R
Sbjct: 59 ---RLQIEDFEARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTR 115
Query: 140 WMPPASGEL 148
W+ P GEL
Sbjct: 116 WVAPLIGEL 124
>sp|Q9ERS2|NDUAD_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13
OS=Mus musculus GN=Ndufa13 PE=1 SV=3
Length = 144
Score = 105 bits (263), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 80/129 (62%), Gaps = 10/129 (7%)
Query: 20 VLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRFMSNNNY 79
V QD PPPGG+ P+ Y R +P +G S ++F GA +G +++ + N+ RR
Sbjct: 6 VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMFAVGIGALIFGYWRMMRWNQERR------- 58
Query: 80 FYWALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGR 139
L E AR A++P+ QAE+D R ++ ++ LE EA +MKDVP WKVGE+V+++ R
Sbjct: 59 ---RLLIEDLEARIALMPLFQAEKDRRTLQILRENLEEEAIIMKDVPNWKVGESVFHTTR 115
Query: 140 WMPPASGEL 148
W+PP GE+
Sbjct: 116 WVPPLIGEM 124
>sp|Q86IZ2|NDUAD_DICDI NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13
OS=Dictyostelium discoideum GN=ndufa13 PE=3 SV=1
Length = 113
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 56/127 (44%), Gaps = 31/127 (24%)
Query: 21 LQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRFMSNNNYF 80
+QD PP GGF ++YAR + P A +F F + G Y + +K+ R
Sbjct: 9 VQDLPPAGGFPKLKYARTSTSPIPGAY-IFAGVFSIMAVGTY-IFFSDKVERN------- 59
Query: 81 YWALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRW 140
A +EE+ ILP+LQAE D F+ +NVY + RW
Sbjct: 60 --AREEEEKRRLSMILPILQAENDINFLASPH-------------------QNVYFT-RW 97
Query: 141 MPPASGE 147
MPP +G+
Sbjct: 98 MPPQTGK 104
>sp|Q46J57|ATPA_PROMT ATP synthase subunit alpha OS=Prochlorococcus marinus (strain
NATL2A) GN=atpA PE=3 SV=1
Length = 504
Score = 36.6 bits (83), Expect = 0.054, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 11/114 (9%)
Query: 28 GGFAPVRYARRIPTKGPSAMALF--LAAFGAFSYGM-----YQVGKGNKIRRFMSNNNYF 80
GG A + ++I +A F LAAF F+ + Q+G+G ++R + +
Sbjct: 368 GGAAQTKAIKKIAGTLKLELAQFDELAAFSQFASDLDEATQKQLGRGKRLRELLKQPQFD 427
Query: 81 YWALKEEK---YAARRAILPMLQAEEDERFVKEWKKYLEY-EAEVMKDVPGWKV 130
L E+ YA + ++ + EE +F +E + YL+ +AE +K+V KV
Sbjct: 428 PLNLAEQVAIVYAGVKGLIDEVPEEEVVKFARELRDYLKTNKAEFLKNVLSEKV 481
>sp|A5GV72|ATPA_SYNR3 ATP synthase subunit alpha OS=Synechococcus sp. (strain RCC307)
GN=atpA PE=3 SV=1
Length = 505
Score = 35.8 bits (81), Expect = 0.092, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Query: 28 GGFAPVRYARRIPTKGPSAMALF--LAAFGAFSYGM-----YQVGKGNKIRRFMSNNNYF 80
GG A + ++I +A F LAAF F+ + Q+G+G ++R + +
Sbjct: 368 GGAAQTKAIKKIAGTLKLELAQFDELAAFSQFASDLDAATQAQLGRGKRLRELLKQAQFS 427
Query: 81 YWALKEEK---YAARRAILPMLQAEEDERFVKEWKKYLE 116
L E+ YA + +L L E+ FV+E + YL+
Sbjct: 428 PLLLAEQVAIVYAGTKGLLDELPVEKVTEFVRELRDYLK 466
>sp|B6EMU1|TRMB_ALISL tRNA (guanine-N(7)-)-methyltransferase OS=Aliivibrio salmonicida
(strain LFI1238) GN=trmB PE=3 SV=1
Length = 238
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 95 ILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMP 142
I P L AE +W+ Y E+ EVM PG+ EN+ G ++P
Sbjct: 164 IRPKLNAEGVFHMATDWENYAEHMIEVMNAAPGY---ENIATDGDYIP 208
>sp|A8G6V1|ATPA_PROM2 ATP synthase subunit alpha OS=Prochlorococcus marinus (strain MIT
9215) GN=atpA PE=3 SV=1
Length = 505
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 15/112 (13%)
Query: 28 GGFAPVRYARRIPTKGPSAMALF--LAAFGAFSYGM-----YQVGKGNKIRRFMSNNNYF 80
GG A + ++I +A F LAAF F+ + Q+ +G ++R + +
Sbjct: 368 GGAAQTKAIKKIAGTLKLELAQFDELAAFSQFASDLDEATQQQLERGKRLRELLKQPQFS 427
Query: 81 YWALKEEK---YAARRAILPMLQAEEDERFVKEWKKYL-----EYEAEVMKD 124
L E+ YA + ++ + EE +F E ++YL E+ E++K+
Sbjct: 428 PLNLAEQVAVVYAGVKGLIDEVPVEEVTKFATELREYLKLNKAEFIEEILKE 479
>sp|Q55CQ6|SERC_DICDI Probable phosphoserine aminotransferase OS=Dictyostelium discoideum
GN=serC PE=3 SV=1
Length = 374
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 63 QVGKGNKIRRFMSNNNYFYWALKEEKYAARRAILPMLQ---AEEDERFVKEWKKYLEYEA 119
+ K + + ++ N+N FY ++ Y +R ++ +Q E +E+F+KE K +
Sbjct: 278 NIAKAHALYEYIDNSNSFYKCSIDKNYRSRMNVVFRIQDGNTELEEKFIKEASKENITDI 337
Query: 120 EVMKDVPGWKVGENVYNS 137
+ + V G +V +YN+
Sbjct: 338 KGHRSVGGLRVS--LYNA 353
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,655,084
Number of Sequences: 539616
Number of extensions: 2784493
Number of successful extensions: 6772
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 6748
Number of HSP's gapped (non-prelim): 25
length of query: 153
length of database: 191,569,459
effective HSP length: 107
effective length of query: 46
effective length of database: 133,830,547
effective search space: 6156205162
effective search space used: 6156205162
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)