Query 031786
Match_columns 153
No_of_seqs 113 out of 157
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 08:08:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031786.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031786hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jmt_B Splicing factor U2AF 65 63.8 2.7 9.3E-05 24.4 1.2 11 22-33 8-18 (28)
2 2knc_B Integrin beta-3; transm 47.5 20 0.00069 24.6 3.6 19 128-146 56-77 (79)
3 1mke_A WIP - N-WAsp, fusion pr 45.7 9.5 0.00032 29.4 1.9 21 23-45 1-21 (152)
4 2d7v_A Hypothetical protein VC 37.6 45 0.0016 24.6 4.6 26 41-66 60-85 (162)
5 2zjr_I 50S ribosomal protein L 30.2 23 0.00077 27.1 1.8 17 28-46 51-67 (156)
6 3v2d_P 50S ribosomal protein L 24.7 60 0.002 24.8 3.3 18 29-46 50-69 (150)
7 4f6r_C Stathmin-like domain R1 23.2 48 0.0016 23.6 2.3 19 106-124 64-82 (87)
8 3p0l_A Steroidogenic acute reg 23.2 69 0.0024 24.1 3.4 32 100-131 5-36 (221)
9 1em2_A MLN64 protein; beta bar 22.8 50 0.0017 24.9 2.6 32 100-131 16-47 (229)
10 3r8s_L 50S ribosomal protein L 20.4 59 0.002 24.6 2.5 18 29-46 48-67 (143)
No 1
>1jmt_B Splicing factor U2AF 65 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens}
Probab=63.82 E-value=2.7 Score=24.43 Aligned_cols=11 Identities=55% Similarity=1.123 Sum_probs=8.3
Q ss_pred ccCCCCCCCCcc
Q 031786 22 QDGPPPGGFAPV 33 (153)
Q Consensus 22 QDmPPpGGY~pi 33 (153)
=|+||+| |+-|
T Consensus 8 WDvpP~G-yE~v 18 (28)
T 1jmt_B 8 WDVPPPG-FEHI 18 (28)
T ss_dssp BTCCCTT-CTTS
T ss_pred cCCCCCC-cccc
Confidence 4999987 8833
No 2
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=47.48 E-value=20 Score=24.62 Aligned_cols=19 Identities=11% Similarity=0.408 Sum_probs=11.6
Q ss_pred cccc-cccccC--CCccCCCCC
Q 031786 128 WKVG-ENVYNS--GRWMPPASG 146 (153)
Q Consensus 128 WkvG-e~vY~t--~rw~~P~~~ 146 (153)
|+.+ -|+|.+ .+|..|+..
T Consensus 56 w~~~~NPlyk~~ttt~~nP~~~ 77 (79)
T 2knc_B 56 WDTANNPLYKEATSTFTNITYR 77 (79)
T ss_dssp HTTTTCCHHHHCSCCSCCCSCC
T ss_pred cccCCCCCccCCccCccCCCcC
Confidence 4445 367844 677777654
No 3
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome protein interacting protein...; polyproline, protein-protein complex; NMR {Rattus norvegicus} SCOP: b.55.1.4
Probab=45.69 E-value=9.5 Score=29.40 Aligned_cols=21 Identities=33% Similarity=0.623 Sum_probs=17.0
Q ss_pred cCCCCCCCCcccccccCCCCCCC
Q 031786 23 DGPPPGGFAPVRYARRIPTKGPS 45 (153)
Q Consensus 23 DmPPpGGY~pi~ykRnlP~rG~s 45 (153)
|+|||--| |...||.|++..+
T Consensus 1 ~~~~~~~~--~~~~~~~ps~l~~ 21 (152)
T 1mke_A 1 DLPPPEPY--VQTTKSYPSKLAR 21 (152)
T ss_dssp CCCCCCCC--CCCCCCCSTTTTC
T ss_pred CCCCCCCc--ccccccCCchhhc
Confidence 89999999 6667999997543
No 4
>2d7v_A Hypothetical protein VCA0330; MCSG, structural genomics, hypothetial PROT protein structure initiative; 1.97A {Vibrio cholerae o1 biovar eltor} SCOP: d.227.1.1
Probab=37.63 E-value=45 Score=24.62 Aligned_cols=26 Identities=12% Similarity=0.084 Sum_probs=20.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhhhh
Q 031786 41 TKGPSAMALFLAAFGAFSYGMYQVGK 66 (153)
Q Consensus 41 ~rG~sg~~~~~~~~~~~~yG~y~~~~ 66 (153)
..|+++.-+|++.++.|.-..+....
T Consensus 60 ~~g~nPeeLllaalaaC~~~~~~~~a 85 (162)
T 2d7v_A 60 EANVDPEEAFVAALSSCHMLVFLSIA 85 (162)
T ss_dssp TTSBCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999988877776653
No 5
>2zjr_I 50S ribosomal protein L15; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.12.1.1 PDB: 1nwx_J* 1nwy_J* 1sm1_J* 1xbp_J* 2zjp_I* 2zjq_I 1nkw_J 3cf5_I* 3dll_I* 3pio_I* 3pip_I* 1pnu_J 1pny_J 1vor_M 1vou_M 1vow_M 1voy_M 1vp0_M
Probab=30.18 E-value=23 Score=27.13 Aligned_cols=17 Identities=29% Similarity=0.595 Sum_probs=13.3
Q ss_pred CCCCcccccccCCCCCCCH
Q 031786 28 GGFAPVRYARRIPTKGPSA 46 (153)
Q Consensus 28 GGY~pi~ykRnlP~rG~sg 46 (153)
||+-|+. |++|++||+-
T Consensus 51 GGQ~Pl~--rrlPK~GF~n 67 (156)
T 2zjr_I 51 GGRSRLI--ARLPKRGFNN 67 (156)
T ss_dssp CCSSSST--TTSCCCCCCC
T ss_pred cCcCCCe--EecCCCCCcC
Confidence 7776664 7799999883
No 6
>3v2d_P 50S ribosomal protein L15; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_J 2hgj_O 2hgq_O 2hgu_O 1vsa_J 2j03_P 2jl6_P 2jl8_P 2v47_P 2v49_P 2wdi_P 2wdj_P 2wdl_P 2wdn_P 2wh2_P 2wh4_P 2wrj_P 2wrl_P 2wro_P 2wrr_P ...
Probab=24.74 E-value=60 Score=24.84 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=13.2
Q ss_pred CCC--cccccccCCCCCCCH
Q 031786 29 GFA--PVRYARRIPTKGPSA 46 (153)
Q Consensus 29 GY~--pi~ykRnlP~rG~sg 46 (153)
||+ ..++-|++|++||+-
T Consensus 50 gFEGGQ~Pl~rRlPK~GF~~ 69 (150)
T 3v2d_P 50 RFEGGRSTTLMRLPKRGMQG 69 (150)
T ss_dssp TCCTTSCCTTTTSCCCSCCC
T ss_pred cccCCCCccEEEcCccCccC
Confidence 454 456778999998763
No 7
>4f6r_C Stathmin-like domain R1; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, subtilisin, tubulin; HET: GTP GDP MES; 2.64A {Artificial gene}
Probab=23.23 E-value=48 Score=23.64 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=16.6
Q ss_pred HHHHHHHHhHHHHHHhccC
Q 031786 106 RFVKEWKKYLEYEAEVMKD 124 (153)
Q Consensus 106 ~~lr~lr~~~e~EaeiMkd 124 (153)
..|++|.+.++.|.++.||
T Consensus 64 ~~L~~Laekreh~~EV~k~ 82 (87)
T 4f6r_C 64 AMLERLQEKDKHAEEVRKN 82 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4789999999999999876
No 8
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=23.17 E-value=69 Score=24.08 Aligned_cols=32 Identities=9% Similarity=0.392 Sum_probs=26.9
Q ss_pred hhhHhHHHHHHHHHhHHHHHHhccCCCCcccc
Q 031786 100 QAEEDERFVKEWKKYLEYEAEVMKDVPGWKVG 131 (153)
Q Consensus 100 qAE~DR~~lr~lr~~~e~EaeiMkdVpGWkvG 131 (153)
..|.|.+|+++-.+..++=-.+..+-.||+.-
T Consensus 5 ~~~~~~~y~~~~~~~~~~~l~~~~~~~gW~~~ 36 (221)
T 3p0l_A 5 YSDQELAYLQQGEEAMQKALGILSNQEGWKKE 36 (221)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEE
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhCCCCCeEe
Confidence 45788999999888888888888888999874
No 9
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=22.83 E-value=50 Score=24.94 Aligned_cols=32 Identities=9% Similarity=0.342 Sum_probs=27.2
Q ss_pred hhhHhHHHHHHHHHhHHHHHHhccCCCCcccc
Q 031786 100 QAEEDERFVKEWKKYLEYEAEVMKDVPGWKVG 131 (153)
Q Consensus 100 qAE~DR~~lr~lr~~~e~EaeiMkdVpGWkvG 131 (153)
..++|..|+++..+..+.=.+++.+-.||+.-
T Consensus 16 l~~~~~~y~~~~~~a~~~~~~~l~~~~~W~~~ 47 (229)
T 1em2_A 16 FSAQEREYIRQGKEATAVVDQILAQEENWKFE 47 (229)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTGGGCEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEE
Confidence 56667999999999988888899888899874
No 10
>3r8s_L 50S ribosomal protein L15; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_L 3j19_L 2wwq_L 3oat_L* 3oas_L* 3ofd_L 3ofc_L 3ofr_L* 3ofz_L* 3og0_L 3ofq_L 3r8t_L 3i1n_L 1p85_J 1p86_J 1vs8_L 1vs6_L 2aw4_L 2awb_L 1vt2_L ...
Probab=20.41 E-value=59 Score=24.57 Aligned_cols=18 Identities=33% Similarity=0.628 Sum_probs=13.4
Q ss_pred CCC--cccccccCCCCCCCH
Q 031786 29 GFA--PVRYARRIPTKGPSA 46 (153)
Q Consensus 29 GY~--pi~ykRnlP~rG~sg 46 (153)
||+ ..++-|++|++||+-
T Consensus 48 gFEGGQ~Pl~rRlPK~GF~~ 67 (143)
T 3r8s_L 48 GFEGGQMPLYRRLPKFGFTS 67 (143)
T ss_dssp TCCTTSCCHHHHSCCCCCCC
T ss_pred ccccCCCccEEEccccccCC
Confidence 464 566778899998874
Done!