BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031787
(153 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P34788|RS18_ARATH 40S ribosomal protein S18 OS=Arabidopsis thaliana GN=RPS18A PE=1
SV=1
Length = 152
Score = 305 bits (781), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 147/151 (97%), Positives = 150/151 (99%)
Query: 3 SLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSA 62
SLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSA
Sbjct: 2 SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSA 61
Query: 63 AELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHR 122
AE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHR
Sbjct: 62 AEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHR 121
Query: 123 GLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
GLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 122 GLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
>sp|Q8ISP0|RS18_BRABE 40S ribosomal protein S18 OS=Branchiostoma belcheri GN=RPS18 PE=2
SV=1
Length = 152
Score = 256 bits (653), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 118/151 (78%), Positives = 139/151 (92%)
Query: 3 SLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSA 62
SLV E FQHILRV+NTN+DG++KIMFALTSIKG+GRR +NIVCKKAD+D++KRAGELS
Sbjct: 2 SLVIPEKFQHILRVMNTNIDGRRKIMFALTSIKGVGRRYSNIVCKKADIDLSKRAGELSD 61
Query: 63 AELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHR 122
E++ L+ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N+LD KLR+DLERLKKIR HR
Sbjct: 62 EEVERLITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVMANSLDNKLREDLERLKKIRAHR 121
Query: 123 GLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
GLRHYWGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct: 122 GLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152
>sp|Q8IT98|RS18_ARGIR 40S ribosomal protein S18 OS=Argopecten irradians GN=RPS18 PE=2
SV=1
Length = 152
Score = 252 bits (644), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 115/151 (76%), Positives = 139/151 (92%)
Query: 3 SLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSA 62
+L+ E FQHILRV+NTN+DGK+KIMFA+T+IKG+GRR AN+VCKKADVD+ KRAGELS
Sbjct: 2 ALIIPEKFQHILRVMNTNIDGKRKIMFAMTAIKGMGRRYANVVCKKADVDITKRAGELSE 61
Query: 63 AELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHR 122
E++ ++ +++NPRQ+KIP+WFLNRQKD KDGKYSQV+SNALD KLR+DLERLKKIR HR
Sbjct: 62 DEIERVITIMSNPRQYKIPNWFLNRQKDVKDGKYSQVMSNALDNKLREDLERLKKIRAHR 121
Query: 123 GLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
GLRHYWGLRVRGQHTKTTGRRG+TVGV+KK+
Sbjct: 122 GLRHYWGLRVRGQHTKTTGRRGRTVGVAKKK 152
>sp|P49202|RS18_CHLRE 40S ribosomal protein S18 OS=Chlamydomonas reinhardtii GN=RPS18
PE=2 SV=1
Length = 153
Score = 243 bits (619), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 112/153 (73%), Positives = 134/153 (87%)
Query: 1 MKSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGEL 60
M SLV +DFQHILR+LNTNVDGK KIM+A+T+I+GIGRR +N+VCKKA+VD+ K AGE
Sbjct: 1 MGSLVQGDDFQHILRLLNTNVDGKNKIMYAMTAIRGIGRRFSNLVCKKAEVDLRKAAGEC 60
Query: 61 SAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRN 120
SA EL+ +M +VANPR +KIPDWFLNRQKD+K G++SQ+ S+ LD +RDDLERLKKIR
Sbjct: 61 SADELERMMGIVANPRAYKIPDWFLNRQKDHKTGRFSQLTSSQLDTVMRDDLERLKKIRG 120
Query: 121 HRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
HRGLRHYWGLRVRGQHTKTTGR GKTVGV+KK+
Sbjct: 121 HRGLRHYWGLRVRGQHTKTTGRAGKTVGVAKKK 153
>sp|Q8JGS9|RS18_DANRE 40S ribosomal protein S18 OS=Danio rerio GN=rps18 PE=2 SV=1
Length = 152
Score = 242 bits (617), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 111/151 (73%), Positives = 136/151 (90%)
Query: 3 SLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSA 62
SLV E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+NKRAGEL+
Sbjct: 2 SLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLNKRAGELTE 61
Query: 63 AELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHR 122
E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HR
Sbjct: 62 DEVERVVTIMQNPRQYKIPDWFLNRQKDIKDGKYSQVLANGLDNKLREDLERLKKIRAHR 121
Query: 123 GLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
GLRH+WGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct: 122 GLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152
>sp|P62271|RS18_RAT 40S ribosomal protein S18 OS=Rattus norvegicus GN=Rps18 PE=1 SV=3
Length = 152
Score = 240 bits (613), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 110/151 (72%), Positives = 135/151 (89%)
Query: 3 SLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSA 62
SLV E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+
Sbjct: 2 SLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTE 61
Query: 63 AELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHR 122
E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HR
Sbjct: 62 DEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHR 121
Query: 123 GLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
GLRH+WGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct: 122 GLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152
>sp|P62272|RS18_PIG 40S ribosomal protein S18 OS=Sus scrofa GN=RPS18 PE=2 SV=3
Length = 152
Score = 240 bits (613), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 110/151 (72%), Positives = 135/151 (89%)
Query: 3 SLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSA 62
SLV E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+
Sbjct: 2 SLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTE 61
Query: 63 AELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHR 122
E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HR
Sbjct: 62 DEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHR 121
Query: 123 GLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
GLRH+WGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct: 122 GLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152
>sp|P62270|RS18_MOUSE 40S ribosomal protein S18 OS=Mus musculus GN=Rps18 PE=1 SV=3
Length = 152
Score = 240 bits (613), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 110/151 (72%), Positives = 135/151 (89%)
Query: 3 SLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSA 62
SLV E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+
Sbjct: 2 SLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTE 61
Query: 63 AELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHR 122
E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HR
Sbjct: 62 DEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHR 121
Query: 123 GLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
GLRH+WGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct: 122 GLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152
>sp|P62269|RS18_HUMAN 40S ribosomal protein S18 OS=Homo sapiens GN=RPS18 PE=1 SV=3
Length = 152
Score = 240 bits (613), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 110/151 (72%), Positives = 135/151 (89%)
Query: 3 SLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSA 62
SLV E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+
Sbjct: 2 SLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTE 61
Query: 63 AELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHR 122
E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HR
Sbjct: 62 DEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHR 121
Query: 123 GLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
GLRH+WGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct: 122 GLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152
>sp|A5JST6|RS18_CAPHI 40S ribosomal protein S18 OS=Capra hircus GN=RPS18 PE=2 SV=1
Length = 152
Score = 240 bits (613), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 110/151 (72%), Positives = 135/151 (89%)
Query: 3 SLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSA 62
SLV E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+
Sbjct: 2 SLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTE 61
Query: 63 AELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHR 122
E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HR
Sbjct: 62 DEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHR 121
Query: 123 GLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
GLRH+WGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct: 122 GLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152
>sp|Q5TJE9|RS18_CANFA 40S ribosomal protein S18 OS=Canis familiaris GN=RPS18 PE=1 SV=3
Length = 152
Score = 240 bits (613), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 110/151 (72%), Positives = 135/151 (89%)
Query: 3 SLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSA 62
SLV E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+
Sbjct: 2 SLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTE 61
Query: 63 AELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHR 122
E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HR
Sbjct: 62 DEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHR 121
Query: 123 GLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
GLRH+WGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct: 122 GLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152
>sp|Q3T0R1|RS18_BOVIN 40S ribosomal protein S18 OS=Bos taurus GN=RPS18 PE=2 SV=3
Length = 152
Score = 240 bits (613), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 110/151 (72%), Positives = 135/151 (89%)
Query: 3 SLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSA 62
SLV E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+
Sbjct: 2 SLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTE 61
Query: 63 AELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHR 122
E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HR
Sbjct: 62 DEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHR 121
Query: 123 GLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
GLRH+WGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct: 122 GLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152
>sp|Q90YQ5|RS18_ICTPU 40S ribosomal protein S18 OS=Ictalurus punctatus GN=rps18 PE=2 SV=1
Length = 152
Score = 240 bits (613), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 110/151 (72%), Positives = 136/151 (90%)
Query: 3 SLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSA 62
SLV E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D++KRAGEL+
Sbjct: 2 SLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLSKRAGELTE 61
Query: 63 AELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHR 122
E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HR
Sbjct: 62 DEVERVVTIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHR 121
Query: 123 GLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
GLRH+WGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct: 122 GLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152
>sp|Q962R1|RS18_SPOFR 40S ribosomal protein S18 OS=Spodoptera frugiperda GN=RpS18 PE=2
SV=1
Length = 152
Score = 239 bits (610), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 107/151 (70%), Positives = 135/151 (89%)
Query: 3 SLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSA 62
SLV + FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +
Sbjct: 2 SLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTE 61
Query: 63 AELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHR 122
E++ ++ +++NPRQ+KIPDWFLNRQKD DGKYSQ+ S+ LD KLR+DLERLKKIR HR
Sbjct: 62 EEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHR 121
Query: 123 GLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
G+RHYWGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct: 122 GMRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152
>sp|P41094|RS18_DROME 40S ribosomal protein S18 OS=Drosophila melanogaster GN=RpS18 PE=1
SV=1
Length = 152
Score = 231 bits (590), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 106/151 (70%), Positives = 131/151 (86%)
Query: 3 SLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSA 62
SLV E FQHILR++NTN+DGK+K+ A+T+IKG+GRR +NIV KKADVD+ KRAGE +
Sbjct: 2 SLVIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECTE 61
Query: 63 AELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHR 122
E+D ++ +++NP Q+K+P+WFLNRQKD DGKY Q+ S+ LD KLRDDLERLKKIR+HR
Sbjct: 62 EEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIRSHR 121
Query: 123 GLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
GLRHYWGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct: 122 GLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152
>sp|O94754|RS18_SCHPO 40S ribosomal protein S18 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rps18a PE=1 SV=1
Length = 152
Score = 231 bits (590), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 108/151 (71%), Positives = 129/151 (85%)
Query: 3 SLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSA 62
SLV ++FQHILR+LNTNVDGK K+MFA+T IKG+GRR ANIVCKKAD+DM+KRAGEL+
Sbjct: 2 SLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELTT 61
Query: 63 AELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHR 122
EL+ ++ ++ NP QFKIP WFLNRQKD DGK Q+++N +D KLR+DLERLKKI+ HR
Sbjct: 62 EELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTHR 121
Query: 123 GLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
GLRH LRVRGQHTKTTGRRGKTVGVSKK+
Sbjct: 122 GLRHALDLRVRGQHTKTTGRRGKTVGVSKKK 152
>sp|Q869U7|RS18_DICDI 40S ribosomal protein S18 OS=Dictyostelium discoideum GN=rps18 PE=3
SV=1
Length = 154
Score = 219 bits (559), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 99/151 (65%), Positives = 127/151 (84%)
Query: 3 SLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSA 62
SLV +FQHI+R+ NTNVDG++KI +ALT +KG+GRR AN+VCKKAD+D +KRAGELS
Sbjct: 4 SLVFQGEFQHIIRIYNTNVDGRRKIQYALTCVKGVGRRFANLVCKKADIDTSKRAGELSK 63
Query: 63 AELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHR 122
E++ L ++ +PRQ+ IP WFLNRQKD KDGKYS ++N +D+K R+DLERLKKIR HR
Sbjct: 64 DEVERLTTIMNHPRQYNIPTWFLNRQKDIKDGKYSHCLANQIDVKFREDLERLKKIRAHR 123
Query: 123 GLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
G+RH++GLRVRGQ TKTTGRRG+TVGV+ +R
Sbjct: 124 GVRHHFGLRVRGQKTKTTGRRGRTVGVAGRR 154
>sp|P48151|RS18_ENTHI 40S ribosomal protein S18 OS=Entamoeba histolytica GN=RPS18 PE=2
SV=1
Length = 155
Score = 203 bits (516), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 90/153 (58%), Positives = 126/153 (82%)
Query: 1 MKSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGEL 60
M ++ + +FQH+LRV NTN+DG++K+ +ALT IKG GRR A +VCK+A +D+NKRAG +
Sbjct: 1 MATVTSESEFQHMLRVCNTNLDGRRKVPYALTGIKGCGRRYAYLVCKRAGIDVNKRAGLM 60
Query: 61 SAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRN 120
+ AE++ ++ ++ +KIP WFLNRQKD KDGK SQ+++NA++ +LR+D+E LKK+R
Sbjct: 61 TPAEIEKIVDILTTQLNYKIPVWFLNRQKDNKDGKDSQLIANAVETRLREDIEALKKMRA 120
Query: 121 HRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
HRGLRHYWGLRVRGQ+TKTTGRRG+TVGVS+ +
Sbjct: 121 HRGLRHYWGLRVRGQNTKTTGRRGRTVGVSRTK 153
>sp|P0CX56|RS18B_YEAST 40S ribosomal protein S18-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPS18B PE=1 SV=1
Length = 146
Score = 202 bits (514), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 95/143 (66%), Positives = 117/143 (81%), Gaps = 2/143 (1%)
Query: 3 SLVANE--DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGEL 60
SLV E FQHILR+LNTNVDG KI++ALT+IKG+GRR +N+VCKKADVD++KRAGEL
Sbjct: 2 SLVVQEQGSFQHILRLLNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGEL 61
Query: 61 SAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRN 120
+ EL+ ++ ++ NP +KIP WFLNRQ D DGK ++N ++ KLRDDLERLKKIR
Sbjct: 62 TQEELERIVQIMQNPTHYKIPAWFLNRQNDITDGKDYHTLANNVESKLRDDLERLKKIRA 121
Query: 121 HRGLRHYWGLRVRGQHTKTTGRR 143
HRG+RH+WGLRVRGQHTKTTGRR
Sbjct: 122 HRGIRHFWGLRVRGQHTKTTGRR 144
>sp|P0CX55|RS18A_YEAST 40S ribosomal protein S18-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPS18A PE=1 SV=1
Length = 146
Score = 202 bits (514), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 95/143 (66%), Positives = 117/143 (81%), Gaps = 2/143 (1%)
Query: 3 SLVANE--DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGEL 60
SLV E FQHILR+LNTNVDG KI++ALT+IKG+GRR +N+VCKKADVD++KRAGEL
Sbjct: 2 SLVVQEQGSFQHILRLLNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGEL 61
Query: 61 SAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRN 120
+ EL+ ++ ++ NP +KIP WFLNRQ D DGK ++N ++ KLRDDLERLKKIR
Sbjct: 62 TQEELERIVQIMQNPTHYKIPAWFLNRQNDITDGKDYHTLANNVESKLRDDLERLKKIRA 121
Query: 121 HRGLRHYWGLRVRGQHTKTTGRR 143
HRG+RH+WGLRVRGQHTKTTGRR
Sbjct: 122 HRGIRHFWGLRVRGQHTKTTGRR 144
>sp|Q2NFZ3|RS13_METST 30S ribosomal protein S13 OS=Methanosphaera stadtmanae (strain DSM
3091) GN=rps13 PE=3 SV=1
Length = 153
Score = 142 bits (358), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 100/149 (67%)
Query: 5 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAE 64
+A ++F+H++R+ +VDG I ALT I+GIG+ A +CK D+D + + G +
Sbjct: 1 MAEQEFRHMVRITRKDVDGNSTIATALTEIRGIGKAFAIAICKVLDLDQDAQIGYIDDES 60
Query: 65 LDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGL 124
+ + V+ NP++F IP+WFLNR+ DY+ G+ ++ + L+M LRDDL R+K IR+++G
Sbjct: 61 VKQIEAVLENPQEFGIPEWFLNRRNDYETGETKHLIESDLNMTLRDDLNRMKMIRSYKGK 120
Query: 125 RHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
RH GL VRGQ TK+T R G +VGVS+ R
Sbjct: 121 RHEVGLPVRGQRTKSTFRHGSSVGVSRTR 149
>sp|O26141|RS13_METTH 30S ribosomal protein S13 OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=rps13 PE=3 SV=1
Length = 149
Score = 135 bits (340), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 100/146 (68%)
Query: 8 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDN 67
E+F+H++R+ ++DG + + ALTSIKG+G+ L+ + A D+N+R G LS E++
Sbjct: 3 EEFKHMVRIARKDIDGNKTMENALTSIKGVGKALSRAIIMSAGYDLNQRIGYLSDEEIER 62
Query: 68 LMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY 127
L + NP ++ IP W +NR+ DY+ G+ ++ + L+M LR+DL R++K R+++G RH
Sbjct: 63 LEEAIKNPAKYNIPSWMINRRNDYETGEDKHLIESDLEMCLREDLNRMRKTRSYKGRRHE 122
Query: 128 WGLRVRGQHTKTTGRRGKTVGVSKKR 153
GL VRGQ TK+T R+G +VGV +K+
Sbjct: 123 LGLPVRGQRTKSTFRKGSSVGVRRKK 148
>sp|O74021|RS13_PYRHO 30S ribosomal protein S13 OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rps13 PE=3 SV=1
Length = 148
Score = 135 bits (340), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 101/145 (69%)
Query: 9 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNL 68
DF+HI+RV ++DG +++ +ALT+IKG+G A +VC+ A +D +AG L+ ++ +
Sbjct: 3 DFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKI 62
Query: 69 MVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYW 128
++ +P IP W +NR KDY+ GK +++ LDM +R+D+ RL++IR +RG+RH
Sbjct: 63 EEILQDPVSHGIPRWAVNRPKDYETGKDLHLITAKLDMAIREDIMRLRRIRAYRGIRHEL 122
Query: 129 GLRVRGQHTKTTGRRGKTVGVSKKR 153
GL VRGQ T++ RRG+TVGVSKK+
Sbjct: 123 GLPVRGQRTRSNFRRGQTVGVSKKK 147
>sp|Q8U0E2|RS13_PYRFU 30S ribosomal protein S13 OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=rps13 PE=1 SV=1
Length = 148
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 102/145 (70%)
Query: 9 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNL 68
+F+HI+RV ++DG +++ +ALT+IKGIG A +VC+ A +D +AG L+ ++ +
Sbjct: 3 NFRHIVRVAGVDLDGNKQLRWALTAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVKKI 62
Query: 69 MVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYW 128
++A+P IP W +NR KDY+ G+ +++ LDM +R+D+ RL++IR +RG+RH
Sbjct: 63 EEILADPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHEL 122
Query: 129 GLRVRGQHTKTTGRRGKTVGVSKKR 153
GL VRGQ T++ RRG+TVGVS+K+
Sbjct: 123 GLPVRGQRTRSNFRRGQTVGVSRKK 147
>sp|Q9V1A0|RS13_PYRAB 30S ribosomal protein S13 OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=rps13 PE=3 SV=1
Length = 148
Score = 132 bits (333), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 101/145 (69%)
Query: 9 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNL 68
DF+HI+RV ++DG +++ +ALT+IKG+G A +VC+ A +D +AG L+ ++ +
Sbjct: 3 DFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKI 62
Query: 69 MVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYW 128
++ +P IP W +NR KDY+ G+ +++ LDM +R+D+ RL++IR +RG+RH
Sbjct: 63 EEILQDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHEL 122
Query: 129 GLRVRGQHTKTTGRRGKTVGVSKKR 153
GL VRGQ T++ RRG+TVGVS+K+
Sbjct: 123 GLPVRGQRTRSNFRRGQTVGVSRKK 147
>sp|A5UN52|RS13_METS3 30S ribosomal protein S13 OS=Methanobrevibacter smithii (strain PS
/ ATCC 35061 / DSM 861) GN=rps13 PE=3 SV=1
Length = 147
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 97/144 (67%)
Query: 8 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDN 67
+DF+H++R+ +VDG + I ALT IKG+G L+ +C+ D+D + G ++ ++
Sbjct: 3 DDFKHLVRISRKDVDGNKTIEQALTEIKGVGISLSTTMCRTLDLDSEAQIGYIADEDVLK 62
Query: 68 LMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY 127
+ ++ NP++F IP+W LNR++DY+ G+ ++ + LDM LRDDL R+KK R+++G RH
Sbjct: 63 IEEILENPQKFNIPNWMLNRREDYETGENIHLIESDLDMTLRDDLNRMKKTRSYKGRRHE 122
Query: 128 WGLRVRGQHTKTTGRRGKTVGVSK 151
GL VRGQ TK+T R +VGV +
Sbjct: 123 AGLPVRGQRTKSTFRNSSSVGVKR 146
>sp|A2BK76|RS13_HYPBU 30S ribosomal protein S13 OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=rps13 PE=3 SV=1
Length = 151
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 97/148 (65%)
Query: 4 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAA 63
+++ + +++I+R+L T++ G K+ + L +KGIG LA +C+ +D NKR G L+ A
Sbjct: 1 MLSEQQYRYIVRILGTDIPGDLKVPYGLALVKGIGVNLAYALCRLLGIDPNKRIGFLTDA 60
Query: 64 ELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRG 123
E++ + +ANP IP W LNR+KDY+ GK +V L ++ D+ER K+IR+ RG
Sbjct: 61 EIEKIEKAMANPLAIGIPVWMLNRRKDYETGKDLHLVGADLIYYVKRDIEREKRIRSWRG 120
Query: 124 LRHYWGLRVRGQHTKTTGRRGKTVGVSK 151
+RH GL+VRGQ T TTGR G T+GV K
Sbjct: 121 IRHALGLKVRGQRTATTGRIGMTIGVRK 148
>sp|A3DMQ3|RS13_STAMF 30S ribosomal protein S13 OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=rps13 PE=3 SV=1
Length = 151
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 97/150 (64%)
Query: 4 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAA 63
+ + ++++I+R+ T++DG K ++ L IKG+G LA +C++ +D R G L+
Sbjct: 1 MSSARNYRYIVRIAGTDIDGSLKTVYGLAEIKGVGVNLAYGICRRLGIDPEMRIGYLTDE 60
Query: 64 ELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRG 123
E+ + +++NP + IP W LNR+KDY GK ++ L ++ D+ER KKI++ RG
Sbjct: 61 EIKRIEDLLSNPSAYDIPSWMLNRRKDYVTGKDMHLIGAELIFYVKQDIEREKKIKSWRG 120
Query: 124 LRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
+RH GL+VRGQ T+TTGR G TVGV KKR
Sbjct: 121 IRHALGLKVRGQRTRTTGRLGLTVGVRKKR 150
>sp|Q8TRR2|RS13_METAC 30S ribosomal protein S13 OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rps13 PE=3
SV=2
Length = 162
Score = 130 bits (326), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 94/147 (63%), Gaps = 1/147 (0%)
Query: 7 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELD 66
NE+ +H++R++NT++ G + + +ALT + G+GRR A ++ K A VD + G L E+
Sbjct: 17 NEELRHLVRIMNTDLQGAKPVQYALTGLPGVGRRTAKLIAKGAGVDPSAILGYLPEEEVA 76
Query: 67 NLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 126
L + +P W LNRQKD G+ ++ + + R+D+ LKK+R +RGLRH
Sbjct: 77 KLDTAIGKFEDI-VPSWMLNRQKDLATGQDKHLLGTDILLTFREDINNLKKVRAYRGLRH 135
Query: 127 YWGLRVRGQHTKTTGRRGKTVGVSKKR 153
GL+VRGQ TK+TGRRG TVGVS+K+
Sbjct: 136 ERGLKVRGQRTKSTGRRGSTVGVSRKK 162
>sp|Q8PV19|RS13_METMA 30S ribosomal protein S13 OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=rps13 PE=3 SV=1
Length = 162
Score = 129 bits (325), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 94/147 (63%), Gaps = 1/147 (0%)
Query: 7 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELD 66
NE+ +H++R++NT++ G + + +ALT + GIGRR A ++ K A VD G L E+
Sbjct: 17 NEELRHLVRIMNTDLKGAKPVEYALTGLPGIGRRTAILIAKGAGVDPTATLGYLPDEEVA 76
Query: 67 NLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 126
L + + +P W LNRQKD G+ ++ + + R+D+ LKK+R +RGLRH
Sbjct: 77 KLDAAIGKFEEI-VPSWMLNRQKDLTTGQDKHLLGTDILLTFREDINNLKKVRAYRGLRH 135
Query: 127 YWGLRVRGQHTKTTGRRGKTVGVSKKR 153
GL+VRGQ TK+TGRRG TVGVS+K+
Sbjct: 136 ERGLKVRGQRTKSTGRRGSTVGVSRKK 162
>sp|Q8SRP2|RS18_ENCCU 40S ribosomal protein S18 OS=Encephalitozoon cuniculi (strain
GB-M1) GN=RPS18 PE=1 SV=1
Length = 153
Score = 129 bits (325), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 96/145 (66%)
Query: 9 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNL 68
+ Q+I+R+ NTN+DG ++I FALT I+GIG R+A +CK+ +D+ KRAGE+ E+ +
Sbjct: 9 EVQYIVRIHNTNIDGTKRIPFALTKIRGIGIRIATAICKRLGIDLRKRAGEMGEDEMKRI 68
Query: 69 MVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYW 128
+ +P IP+ ++N Q+D DG S ++ LD LR +ER KK + R R
Sbjct: 69 SDAILDPASVGIPESYMNHQRDIIDGTTSHLIGTRLDADLRMMIERGKKNKRIRAYRLDV 128
Query: 129 GLRVRGQHTKTTGRRGKTVGVSKKR 153
GL+VRGQ TK+ GRRG+++GVS+K+
Sbjct: 129 GLKVRGQRTKSNGRRGRSMGVSRKK 153
>sp|Q46GC7|RS13_METBF 30S ribosomal protein S13 OS=Methanosarcina barkeri (strain Fusaro
/ DSM 804) GN=rps13 PE=3 SV=1
Length = 162
Score = 128 bits (321), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 94/147 (63%), Gaps = 1/147 (0%)
Query: 7 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELD 66
NE+ +H++R++NT++ G + + +ALT + GIGRR A ++ K A VD G L E+
Sbjct: 17 NEEIRHLVRIMNTDLKGAKPVEYALTGLPGIGRRTAILIAKGAGVDPTATLGYLPDEEVA 76
Query: 67 NLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 126
L + N +P W LNRQKD G+ ++ + + R+D+ LKK+R +RGLRH
Sbjct: 77 KLDRAIGNFEGI-VPSWMLNRQKDLATGQDKHLLGTDILLTFREDINNLKKVRAYRGLRH 135
Query: 127 YWGLRVRGQHTKTTGRRGKTVGVSKKR 153
GL+VRGQ TK+TGRRG TVGVS+++
Sbjct: 136 ERGLKVRGQRTKSTGRRGSTVGVSRRK 162
>sp|A0B9L1|RS13_METTP 30S ribosomal protein S13 OS=Methanosaeta thermophila (strain DSM
6194 / PT) GN=rps13 PE=3 SV=1
Length = 159
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 100/152 (65%), Gaps = 1/152 (0%)
Query: 2 KSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 61
K ++ + +HI+R+ NT++DGK+++ ALT IKG+GRRLA + KA VD G+L
Sbjct: 4 KETESSVELRHIVRIYNTDLDGKKQVQMALTGIKGVGRRLARVFAVKAGVDPCATLGKLP 63
Query: 62 AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 121
+++ L V+ + R IP W +NR+KD G V+ + LR+DL+ +KK R++
Sbjct: 64 EEQIEALKNVIESVRD-NIPAWMMNRRKDIITGVDKHVMGAEVLTTLREDLDIMKKTRSY 122
Query: 122 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
+G+RH GLRVRGQ T++TGR G TVGV++K+
Sbjct: 123 KGIRHELGLRVRGQRTRSTGRSGATVGVTRKK 154
>sp|Q8TVC1|RS13_METKA 30S ribosomal protein S13 OS=Methanopyrus kandleri (strain AV19 /
DSM 6324 / JCM 9639 / NBRC 100938) GN=rps13 PE=3 SV=1
Length = 151
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/151 (43%), Positives = 104/151 (68%), Gaps = 2/151 (1%)
Query: 5 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAE 64
+A+++ + I+R+ + ++DG +K+ +ALT IKGIG R+A +C++ +D K+ GELS E
Sbjct: 1 MADDEVKPIVRIADVDLDGHKKVPYALTGIKGIGIRMAYAICRELGLDEEKKLGELSDEE 60
Query: 65 LDNLMVVVA--NPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHR 122
++ + + + + IP W NRQKDY+ G+ +V L+M ++ D++RLKKIR +R
Sbjct: 61 IERIEEEIKKLSEGESNIPSWMYNRQKDYETGEDMHLVGAELEMTVKQDIDRLKKIRAYR 120
Query: 123 GLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
G+RH GL VRGQ TK++ RRG+TVGV KK+
Sbjct: 121 GIRHELGLPVRGQRTKSSFRRGRTVGVKKKQ 151
>sp|Q5JJF1|RS13_PYRKO 30S ribosomal protein S13 OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=rps13 PE=3 SV=1
Length = 149
Score = 126 bits (317), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 97/147 (65%)
Query: 7 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELD 66
E+F+HI+RV ++DG +++ +ALT IKGIG A +V + A +D +AG L+ ++
Sbjct: 2 TENFRHIVRVAGVDIDGHKQVRWALTGIKGIGINFATMVLRVAGIDPFMKAGYLTDEQVK 61
Query: 67 NLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 126
+ ++A+P IP W +NR KDY+ GK +++ L M R+D+ RL++IR +RG+RH
Sbjct: 62 KIEEILADPVAHGIPAWAVNRPKDYETGKDMHLITAKLVMAWREDVNRLRRIRAYRGIRH 121
Query: 127 YWGLRVRGQHTKTTGRRGKTVGVSKKR 153
GL VRGQ T++ R G TVGVS+++
Sbjct: 122 ELGLPVRGQRTRSNFRHGTTVGVSRRK 148
>sp|P54019|RS13_METJA 30S ribosomal protein S13 OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rps13 PE=3 SV=2
Length = 150
Score = 126 bits (316), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 99/147 (67%)
Query: 7 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELD 66
N +F++++RV T++DG +K++ AL I G+G +A + + A +D NK AG L+ E+
Sbjct: 3 NSEFKYLIRVSRTDLDGNKKLIMALQDIYGVGEAMARAIVRVAKLDPNKLAGYLTEEEVK 62
Query: 67 NLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 126
+ V+A+P +F IP W NR+KDY G+ V+ + L + ++D+ RLK+IR +RG+RH
Sbjct: 63 KIEEVLADPAKFGIPSWMFNRRKDYVTGEDKHVIESDLMIIKQEDINRLKRIRCYRGIRH 122
Query: 127 YWGLRVRGQHTKTTGRRGKTVGVSKKR 153
GL RGQ TK+T RRG TVGVS+++
Sbjct: 123 ELGLPCRGQRTKSTFRRGPTVGVSRRK 149
>sp|Q0W1V6|RS13_UNCMA 30S ribosomal protein S13 OS=Uncultured methanogenic archaeon RC-I
GN=rps13 PE=3 SV=1
Length = 224
Score = 124 bits (310), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 97/146 (66%), Gaps = 1/146 (0%)
Query: 8 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDN 67
++ ++I+R+ NT++DG Q + FALT IKGIG R++ I+ ++A VD + G L ++D
Sbjct: 67 DEIKYIVRIANTDLDGTQTVEFALTGIKGIGNRISKIIARQAQVDPHATMGYLPPEQVDK 126
Query: 68 LMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY 127
L V+ N + +P W LNR++D G+ + L M +++D+ +KKIR+++G+RH
Sbjct: 127 LRAVIDN-LEANVPVWMLNRRRDIYTGEDKHLYGVDLTMAVKEDINIMKKIRSYKGIRHE 185
Query: 128 WGLRVRGQHTKTTGRRGKTVGVSKKR 153
G +VRGQ TK+TGR G TVGV +K+
Sbjct: 186 RGQKVRGQRTKSTGRTGATVGVVRKK 211
>sp|Q6KZP8|RS13_PICTO 30S ribosomal protein S13 OS=Picrophilus torridus (strain ATCC
700027 / DSM 9790 / JCM 10055 / NBRC 100828) GN=rps13
PE=3 SV=1
Length = 158
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 97/147 (65%)
Query: 7 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELD 66
NE+FQ+I+R+ N +++G++ + AL +KGIG RL+ + KK D+D ++R GEL +++
Sbjct: 8 NENFQYIVRIANKDLNGERPLKLALADLKGIGLRLSETIAKKLDLDPDQRIGELGEDKIE 67
Query: 67 NLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 126
L + IP W N ++D GK +VSN LD+++ DD+ +KK+R+++G+RH
Sbjct: 68 ELRKYIEGKVYDGIPYWMYNHRRDITTGKDFNLVSNDLDLQINDDINLMKKMRSYKGIRH 127
Query: 127 YWGLRVRGQHTKTTGRRGKTVGVSKKR 153
GL+VRGQ ++ GR+G +GV +K+
Sbjct: 128 ERGLKVRGQRMRSNGRKGLAIGVVRKK 154
>sp|Q97B96|RS13_THEVO 30S ribosomal protein S13 OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=rps13 PE=3 SV=1
Length = 171
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 102/147 (69%), Gaps = 1/147 (0%)
Query: 7 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELD 66
N+DFQ+I+R+ N +++G++ I AL+ +KGIG RL + ++ ++ K+ GEL E++
Sbjct: 25 NKDFQYIVRIANKDLNGERPIPLALSDLKGIGLRLGYAIAERLNLQPTKKIGELKEDEIE 84
Query: 67 NLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 126
L V N +++ +PDW LN +++ GK +V+ LD+++++D+ +KKIR+++G+RH
Sbjct: 85 KLKEYVEN-KEYDLPDWLLNHRREPVTGKNLNLVTTDLDVQVQEDINLMKKIRSYKGIRH 143
Query: 127 YWGLRVRGQHTKTTGRRGKTVGVSKKR 153
G +VRGQ T++ GRRG ++GV +K+
Sbjct: 144 EKGKKVRGQRTRSNGRRGLSIGVVRKK 170
>sp|Q12ZR6|RS13_METBU 30S ribosomal protein S13 OS=Methanococcoides burtonii (strain DSM
6242) GN=rps13 PE=3 SV=1
Length = 148
Score = 120 bits (300), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 97/149 (65%), Gaps = 1/149 (0%)
Query: 5 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAE 64
+A+E+ +H++R++NT++ GK+ + +ALT I+GIG R + ++ +D N G LS +
Sbjct: 1 MADEEIRHLVRIMNTDLQGKKPVKYALTGIRGIGLRTSRVIVDSTGIDPNAVIGYLSDED 60
Query: 65 LDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGL 124
+ L + + + ++P W LNRQ D G+ ++ + + L++DL LKK R +RGL
Sbjct: 61 IKKLDSTI-DKFEEQLPKWMLNRQFDPLTGENKHLLGQDIILTLKEDLNDLKKSRAYRGL 119
Query: 125 RHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
RH GL+VRGQ TK+TGRRG T+GV KK+
Sbjct: 120 RHERGLKVRGQRTKSTGRRGSTIGVRKKK 148
>sp|Q9HJD6|RS13_THEAC 30S ribosomal protein S13 OS=Thermoplasma acidophilum (strain ATCC
25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
GN=rps13 PE=3 SV=1
Length = 171
Score = 119 bits (297), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 104/147 (70%), Gaps = 1/147 (0%)
Query: 7 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELD 66
N+DFQ+I+R+ N +++G++ + AL+ +KGIG RL ++ ++ D+ ++K+ GEL +L+
Sbjct: 25 NKDFQYIVRIANKDLNGERLLPLALSDLKGIGERLGYVIAERLDLPIDKKIGELKEEQLE 84
Query: 67 NLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 126
L V +++ +P+W LN +++ GK +VS L++++++D+ +KKIR+++G+RH
Sbjct: 85 KLREYVE-AKEYDLPEWLLNHRREPVTGKNLNLVSTDLEIQVQEDINLMKKIRSYKGIRH 143
Query: 127 YWGLRVRGQHTKTTGRRGKTVGVSKKR 153
G +VRGQ T++ GR+G ++GV +K+
Sbjct: 144 EKGKKVRGQRTRSNGRKGLSIGVVRKK 170
>sp|Q9YB60|RS13_AERPE 30S ribosomal protein S13 OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rps13p PE=3
SV=2
Length = 150
Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 90/150 (60%)
Query: 4 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAA 63
+ F++I+R+ ++DG K+ + L SIKGIG A V + +D K+ G L+
Sbjct: 1 MAGETSFKYIVRIAGVDIDGDLKLPYGLASIKGIGYTTAMAVIRMLGLDPEKKVGFLTEE 60
Query: 64 ELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRG 123
E+ L V+ + Q +P W NR+KDY+ GK ++ + L R D+ER KI + RG
Sbjct: 61 EIRRLDEVLRDITQLGLPKWLYNRRKDYETGKDLHLIGSELIFYARRDIEREMKIGSWRG 120
Query: 124 LRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
+RH +GL+VRGQ T+TTGR G T+GV KKR
Sbjct: 121 IRHKYGLKVRGQRTRTTGRLGMTIGVRKKR 150
>sp|Q3IQT9|RS13_NATPD 30S ribosomal protein S13 OS=Natronomonas pharaonis (strain DSM
2160 / ATCC 35678) GN=rps13 PE=3 SV=1
Length = 170
Score = 117 bits (293), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 91/144 (63%), Gaps = 1/144 (0%)
Query: 7 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELD 66
+ED Q+ +R+ T++DG + + ALT + GIGRR+A I+ +KA+VD G L ++D
Sbjct: 12 DEDLQYFVRIGQTDLDGTKSVERALTDMNGIGRRVARIIAEKAEVDRRDVLGALDEEKID 71
Query: 67 NLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 126
+++ V ++P+W N QKD+ G+ + + N L M R D+ R+KKI +RG+RH
Sbjct: 72 DVVAAVEEYGD-EVPEWLTNHQKDFFTGETTHEIGNDLQMSRRQDINRMKKIDAYRGVRH 130
Query: 127 YWGLRVRGQHTKTTGRRGKTVGVS 150
G +VRGQ TK+TGR T+GV+
Sbjct: 131 KRGQKVRGQRTKSTGRTEGTIGVN 154
>sp|O27999|RS13_ARCFU 30S ribosomal protein S13 OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=rps13 PE=3 SV=1
Length = 146
Score = 113 bits (282), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 92/144 (63%), Gaps = 1/144 (0%)
Query: 10 FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLM 69
F+HI+R+ +T++DG + +MFALT IKGIG R A + + VD + GEL ++ +
Sbjct: 3 FKHIVRIADTDLDGNKSLMFALTGIKGIGLRAARCIVNELGVDGRAKLGELDDETIEKVK 62
Query: 70 VVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWG 129
V + +P W LNR+KD G+ ++S +D D+ERL K++ +RG+RH G
Sbjct: 63 KFVEEEIE-SLPSWLLNRRKDPYSGQDLHLLSKDVDFARMLDIERLIKMKAYRGVRHARG 121
Query: 130 LRVRGQHTKTTGRRGKTVGVSKKR 153
+VRGQ T++TGR+G+TVGV +++
Sbjct: 122 KKVRGQRTRSTGRKGRTVGVVRRK 145
>sp|Q2FT96|RS13_METHJ 30S ribosomal protein S13 OS=Methanospirillum hungatei (strain JF-1
/ DSM 864) GN=rps13 PE=3 SV=1
Length = 151
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 90/147 (61%), Gaps = 1/147 (0%)
Query: 7 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELD 66
+++ + +RV NT++DG + ++ +LT IKG+GR A + + A V+ N G+L A +D
Sbjct: 5 DQEINYFVRVHNTDLDGTKPVLISLTGIKGVGRHTAKFIAETAGVEKNVLMGKLDEASVD 64
Query: 67 NLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 126
+ VV+N +IP W NR KD G ++ + M + DD+ LKKIR +RG+RH
Sbjct: 65 RIREVVSNYAD-RIPVWMSNRPKDVYTGVKRHLLGADVTMTVDDDINLLKKIRAYRGIRH 123
Query: 127 YWGLRVRGQHTKTTGRRGKTVGVSKKR 153
G +VRGQ TK+TGR G VGV +K+
Sbjct: 124 ETGQKVRGQRTKSTGRTGLIVGVKRKK 150
>sp|A2SSW0|RS13_METLZ 30S ribosomal protein S13 OS=Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z) GN=rps13 PE=3 SV=1
Length = 150
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 89/151 (58%), Gaps = 3/151 (1%)
Query: 4 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAA 63
+V + ++ +R++NT++DG Q + ALT IKGIG A I+ ++A VD G L
Sbjct: 1 MVEESELKYFVRIINTDLDGTQPVQLALTGIKGIGLHAALIIARRAGVDTRATMGLLGDE 60
Query: 64 ELDNLMVVV-ANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHR 122
++ + V A P +P W +NR D G+ + + L + DD+ +KK+R +R
Sbjct: 61 DVAAIEEQVKAYPAS--VPKWMVNRPVDVYSGEPKHLYGSDLSLAKEDDINLMKKMRCYR 118
Query: 123 GLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
G+RH GL+VRGQ TK TGR GK VGVSK+R
Sbjct: 119 GIRHENGLKVRGQRTKATGRFGKIVGVSKRR 149
>sp|A3CWH6|RS13_METMJ 30S ribosomal protein S13 OS=Methanoculleus marisnigri (strain ATCC
35101 / DSM 1498 / JR1) GN=rps13 PE=3 SV=1
Length = 149
Score = 109 bits (272), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 89/146 (60%), Gaps = 1/146 (0%)
Query: 8 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDN 67
E+ ++ +RV NT++DG + + ALT IKGIG + + A VD + G+L +
Sbjct: 4 EEIKYFVRVRNTDLDGTKAVHIALTGIKGIGPHTSRTITALAAVDPHAILGKLDDESVGR 63
Query: 68 LMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY 127
+ V + ++PDW +NRQKD G+ ++ L M DD+ R++K+R++RG+RH
Sbjct: 64 IANAVDTYTE-QVPDWMVNRQKDVYTGEVRHLLGTDLTMMNDDDVNRMRKMRSYRGIRHE 122
Query: 128 WGLRVRGQHTKTTGRRGKTVGVSKKR 153
G +VRGQ TK+TGR G TVGV +K+
Sbjct: 123 TGQKVRGQRTKSTGRTGTTVGVKRKK 148
>sp|A1RT04|RS13_PYRIL 30S ribosomal protein S13 OS=Pyrobaculum islandicum (strain DSM
4184 / JCM 9189) GN=rps13 PE=3 SV=1
Length = 153
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 94/147 (63%), Gaps = 1/147 (0%)
Query: 7 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELD 66
+++ + I+R+ +T++DG +++ ++LT I+GIG A +C+K +D + G LS +++
Sbjct: 2 SQEIRAIVRIGDTDLDGNKQVAYSLTKIRGIGIATAYAICRKLGIDPHAILGALSEEQIN 61
Query: 67 NLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 126
L V N + P WFLNR+KD + GK ++ L + + D++ +KK+++ +G+RH
Sbjct: 62 KLDWAVRNLHELA-PAWFLNRRKDPETGKDLHLIGAELVLAAKRDVDLMKKLKSWKGVRH 120
Query: 127 YWGLRVRGQHTKTTGRRGKTVGVSKKR 153
GL+VRGQ T TTGR G GV+KK+
Sbjct: 121 SLGLKVRGQRTVTTGRLGPVAGVTKKK 147
>sp|A3MUT0|RS13_PYRCJ 30S ribosomal protein S13 OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=rps13 PE=3 SV=1
Length = 153
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 92/146 (63%), Gaps = 1/146 (0%)
Query: 8 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDN 67
++ + I+R+ +T++DG + + +AL I+GIG A +C+K +D + G L +++
Sbjct: 3 QEIRAIVRIGDTDLDGNKTVAYALAKIRGIGIATAYAICRKLGIDPHATLGLLPEDQINK 62
Query: 68 LMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY 127
L V N + P WFLNR+KD + G+ ++ + L + + D++ +KK+++ +G+RH
Sbjct: 63 LDWAVRNLHELA-PAWFLNRRKDPETGRDLHLIGSELVLAAKRDVDLMKKLKSWKGIRHS 121
Query: 128 WGLRVRGQHTKTTGRRGKTVGVSKKR 153
GL+VRGQ T TTGR G T GV+KK+
Sbjct: 122 LGLKVRGQRTVTTGRFGATAGVTKKK 147
>sp|Q8ZTV0|RS13_PYRAE 30S ribosomal protein S13 OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=rps13 PE=3 SV=1
Length = 152
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 93/147 (63%), Gaps = 1/147 (0%)
Query: 7 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELD 66
+++ + I+R+ +T++DG +++ +AL I+GIG A +C K +D + G L +++
Sbjct: 2 SQEIRAIVRIGDTDLDGNKQVAYALAKIRGIGIASAYAICWKLGIDPHAILGALPEDQIN 61
Query: 67 NLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 126
L V N + P WFLNR+KD + G+ ++ + L + + D++ +KK+++ +G+RH
Sbjct: 62 KLDWAVRNLHELA-PAWFLNRRKDPETGRDLHLIGSELVLAAKRDVDLMKKLKSWKGVRH 120
Query: 127 YWGLRVRGQHTKTTGRRGKTVGVSKKR 153
GL+VRGQ T TTGR G T GV+KK+
Sbjct: 121 SLGLKVRGQRTVTTGRFGATAGVTKKK 147
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,763,761
Number of Sequences: 539616
Number of extensions: 1882887
Number of successful extensions: 7114
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 5671
Number of HSP's gapped (non-prelim): 891
length of query: 153
length of database: 191,569,459
effective HSP length: 107
effective length of query: 46
effective length of database: 133,830,547
effective search space: 6156205162
effective search space used: 6156205162
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)