Query 031787
Match_columns 153
No_of_seqs 115 out of 1037
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 08:10:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031787.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031787hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz6_M 40S ribosomal protein S 100.0 1.7E-69 5.9E-74 414.5 7.1 152 2-153 1-152 (152)
2 2xzm_M RPS18E; ribosome, trans 100.0 1.5E-68 5.2E-73 410.4 4.3 152 2-153 1-154 (155)
3 3j20_O 30S ribosomal protein S 100.0 1.6E-67 5.5E-72 402.0 3.0 146 8-153 2-147 (148)
4 3u5c_S 40S ribosomal protein S 100.0 7.4E-65 2.5E-69 386.6 9.0 144 2-145 1-146 (146)
5 2vqe_M 30S ribosomal protein S 100.0 1.1E-48 3.7E-53 291.3 3.7 111 13-145 1-111 (126)
6 3r8n_M 30S ribosomal protein S 100.0 2.4E-47 8.3E-52 279.8 5.5 109 14-145 1-109 (114)
7 3bbn_M Ribosomal protein S13; 100.0 3.4E-44 1.2E-48 271.7 -2.4 109 3-145 30-144 (145)
8 1mu5_A Type II DNA topoisomera 98.4 1.8E-07 6.3E-12 82.0 4.9 106 9-123 238-348 (471)
9 2zbk_B Type 2 DNA topoisomeras 97.7 2.4E-05 8.2E-10 69.5 4.6 89 26-123 254-347 (530)
10 1k3x_A Endonuclease VIII; hydr 96.0 0.0061 2.1E-07 49.4 4.5 50 25-74 151-203 (262)
11 1ee8_A MUTM (FPG) protein; bet 96.0 0.0064 2.2E-07 49.4 4.5 52 23-74 142-196 (266)
12 1k82_A Formamidopyrimidine-DNA 96.0 0.0064 2.2E-07 49.4 4.5 52 23-74 149-203 (268)
13 2xzf_A Formamidopyrimidine-DNA 96.0 0.0066 2.2E-07 49.4 4.5 52 23-74 152-206 (271)
14 3u6p_A Formamidopyrimidine-DNA 95.9 0.0075 2.6E-07 49.2 4.6 52 23-74 154-208 (273)
15 3twl_A Formamidopyrimidine-DNA 95.8 0.0086 3E-07 49.8 4.6 52 23-74 167-221 (310)
16 3w0f_A Endonuclease 8-like 3; 95.8 0.0085 2.9E-07 49.5 4.4 51 24-74 174-227 (287)
17 3vk8_A Probable formamidopyrim 95.7 0.0092 3.2E-07 49.2 4.3 52 23-74 153-208 (295)
18 1kft_A UVRC, excinuclease ABC 92.7 0.058 2E-06 35.4 2.2 33 18-50 13-45 (78)
19 2a1j_A DNA repair endonuclease 92.5 0.052 1.8E-06 34.7 1.7 37 30-68 5-41 (63)
20 3fut_A Dimethyladenosine trans 91.2 0.14 4.9E-06 41.3 3.4 64 8-74 206-269 (271)
21 1z00_B DNA repair endonuclease 88.6 0.13 4.4E-06 34.9 1.0 42 25-68 14-55 (84)
22 1tdh_A NEI endonuclease VIII-l 88.4 0.046 1.6E-06 46.5 -1.7 40 24-63 158-200 (364)
23 1z00_A DNA excision repair pro 87.8 0.26 8.7E-06 32.9 2.1 49 27-75 17-74 (89)
24 3ftd_A Dimethyladenosine trans 87.8 0.39 1.3E-05 37.8 3.5 55 8-74 192-246 (249)
25 3arc_U Photosystem II 12 kDa e 87.6 0.56 1.9E-05 32.5 3.8 53 22-74 19-74 (97)
26 1x2i_A HEF helicase/nuclease; 87.4 0.48 1.6E-05 29.9 3.1 50 26-75 11-69 (75)
27 1qyr_A KSGA, high level kasuga 87.1 0.4 1.4E-05 38.0 3.1 58 8-73 192-249 (252)
28 3uzu_A Ribosomal RNA small sub 86.4 0.17 5.8E-06 40.9 0.6 59 8-74 216-274 (279)
29 2duy_A Competence protein come 85.9 0.49 1.7E-05 30.5 2.6 46 25-70 23-71 (75)
30 2a1j_B DNA excision repair pro 83.2 0.35 1.2E-05 32.4 0.9 24 27-50 30-53 (91)
31 1s5l_U Photosystem II 12 kDa e 81.7 1 3.6E-05 33.1 3.0 51 24-74 58-111 (134)
32 2q2e_B Type 2 DNA topoisomeras 80.5 0.37 1.3E-05 43.5 0.3 87 28-123 260-350 (621)
33 3fhg_A Mjogg, N-glycosylase/DN 79.5 1.3 4.5E-05 34.1 3.1 43 26-72 114-156 (207)
34 3tqs_A Ribosomal RNA small sub 77.5 0.59 2E-05 37.1 0.6 57 8-72 198-254 (255)
35 3q8k_A Flap endonuclease 1; he 77.1 1.5 5.2E-05 36.4 3.1 36 6-50 218-253 (341)
36 2edu_A Kinesin-like protein KI 76.9 2.9 9.8E-05 28.3 4.0 22 28-49 39-60 (98)
37 3fhf_A Mjogg, N-glycosylase/DN 74.5 1.7 5.7E-05 34.0 2.5 42 27-72 122-164 (214)
38 3n0u_A Probable N-glycosylase/ 74.5 1.6 5.5E-05 34.2 2.4 64 28-105 128-192 (219)
39 1ixr_A Holliday junction DNA h 74.0 1.5 5E-05 33.8 2.0 59 16-74 59-129 (191)
40 2ztd_A Holliday junction ATP-d 73.1 1.6 5.4E-05 34.3 2.0 59 16-74 75-145 (212)
41 3gru_A Dimethyladenosine trans 72.4 0.89 3E-05 37.0 0.4 64 9-74 214-287 (295)
42 2nrt_A Uvrabc system protein C 71.6 1.6 5.5E-05 34.5 1.8 39 28-68 167-205 (220)
43 1cuk_A RUVA protein; DNA repai 70.3 2 6.8E-05 33.3 2.0 58 16-73 60-129 (203)
44 1vq8_Y 50S ribosomal protein L 68.7 1 3.5E-05 36.0 0.0 35 30-65 16-50 (241)
45 2eo2_A Adult MALE hypothalamus 67.4 5.4 0.00019 26.2 3.3 25 46-71 37-61 (71)
46 3c65_A Uvrabc system protein C 65.4 1.3 4.4E-05 35.2 0.0 42 25-68 169-210 (226)
47 2ztd_A Holliday junction ATP-d 65.2 2.8 9.6E-05 32.8 1.9 22 29-50 123-144 (212)
48 3ory_A Flap endonuclease 1; hy 64.9 3.3 0.00011 34.7 2.4 36 6-50 236-272 (363)
49 2gqf_A Hypothetical protein HI 64.6 4.4 0.00015 33.6 3.1 49 23-74 279-327 (401)
50 1pu6_A 3-methyladenine DNA gly 64.4 3 0.0001 32.3 2.0 41 27-71 119-159 (218)
51 3v76_A Flavoprotein; structura 64.4 5.7 0.0002 33.3 3.8 49 23-74 298-346 (417)
52 1qam_A ERMC' methyltransferase 64.1 3.8 0.00013 31.6 2.5 31 44-74 211-241 (244)
53 1ul1_X Flap endonuclease-1; pr 60.4 4.6 0.00016 33.8 2.5 36 6-50 218-253 (379)
54 1rxw_A Flap structure-specific 60.2 4.3 0.00015 33.3 2.3 36 6-50 221-256 (336)
55 2izo_A FEN1, flap structure-sp 59.9 4.7 0.00016 33.3 2.4 36 6-50 219-255 (346)
56 3b0x_A DNA polymerase beta fam 59.8 3.8 0.00013 36.1 1.9 29 25-53 89-117 (575)
57 2abk_A Endonuclease III; DNA-r 59.6 4 0.00014 31.2 1.9 25 27-51 107-132 (211)
58 3vdp_A Recombination protein R 59.2 5.9 0.0002 31.2 2.8 39 28-74 25-63 (212)
59 1kg2_A A/G-specific adenine gl 58.8 4.3 0.00015 31.4 1.9 41 27-72 107-148 (225)
60 3qe9_Y Exonuclease 1; exonucle 58.8 4.8 0.00016 33.5 2.3 37 5-50 210-246 (352)
61 2h56_A DNA-3-methyladenine gly 58.2 7.2 0.00025 30.4 3.2 33 26-58 135-168 (233)
62 4e9f_A Methyl-CPG-binding doma 58.1 4.4 0.00015 30.2 1.8 36 10-48 88-123 (161)
63 1kea_A Possible G-T mismatches 57.9 6.8 0.00023 30.2 2.9 41 28-72 114-154 (221)
64 1ixr_A Holliday junction DNA h 57.7 4.7 0.00016 30.9 1.9 22 29-50 107-128 (191)
65 1cuk_A RUVA protein; DNA repai 57.7 4.6 0.00016 31.2 1.9 21 29-49 108-128 (203)
66 2fmp_A DNA polymerase beta; nu 57.5 4.5 0.00015 33.4 1.9 41 28-69 97-141 (335)
67 1mpg_A ALKA, 3-methyladenine D 57.4 13 0.00044 29.6 4.6 27 27-53 205-231 (282)
68 1jms_A Terminal deoxynucleotid 57.3 3.9 0.00013 34.5 1.6 26 28-54 120-145 (381)
69 2bgw_A XPF endonuclease; hydro 57.3 3.9 0.00013 31.3 1.4 23 28-50 161-183 (219)
70 1orn_A Endonuclease III; DNA r 57.2 4.7 0.00016 31.3 1.9 25 27-51 111-136 (226)
71 2bcq_A DNA polymerase lambda; 56.2 3.2 0.00011 34.4 0.8 29 24-53 91-119 (335)
72 1exn_A 5'-exonuclease, 5'-nucl 55.8 6.4 0.00022 32.1 2.6 34 8-50 189-224 (290)
73 2jhn_A ALKA, 3-methyladenine D 55.6 7.9 0.00027 31.2 3.1 32 27-59 208-240 (295)
74 2ihm_A POL MU, DNA polymerase 54.5 5.4 0.00018 33.4 1.9 40 28-68 101-144 (360)
75 1kft_A UVRC, excinuclease ABC 54.2 6.1 0.00021 25.3 1.8 20 30-49 57-76 (78)
76 1a76_A Flap endonuclease-1 pro 53.9 6.7 0.00023 32.0 2.4 36 6-50 210-245 (326)
77 4b21_A Probable DNA-3-methylad 53.8 5.1 0.00017 31.4 1.6 43 27-72 148-191 (232)
78 2yg9_A DNA-3-methyladenine gly 53.6 5.1 0.00017 31.2 1.6 33 27-59 144-177 (225)
79 3s6i_A DNA-3-methyladenine gly 53.1 5.3 0.00018 31.2 1.6 32 28-59 138-170 (228)
80 1vdd_A Recombination protein R 52.9 8.4 0.00029 30.6 2.7 41 26-74 9-49 (228)
81 1b43_A Protein (FEN-1); nuclea 51.3 6 0.00021 32.4 1.7 37 6-50 222-258 (340)
82 2a1j_B DNA excision repair pro 50.4 7.4 0.00025 25.7 1.8 21 30-50 65-85 (91)
83 3i0w_A 8-oxoguanine-DNA-glycos 50.1 6.2 0.00021 31.9 1.6 42 27-72 209-251 (290)
84 1z00_A DNA excision repair pro 50.1 8 0.00027 25.3 1.9 21 30-50 52-72 (89)
85 1nd9_A Translation initiation 49.6 7 0.00024 22.4 1.4 41 31-72 8-48 (49)
86 4ecq_A DNA polymerase ETA; tra 49.2 13 0.00045 31.5 3.6 38 30-67 254-291 (435)
87 2ee7_A Sperm flagellar protein 48.3 7.2 0.00025 28.1 1.5 35 58-95 10-44 (127)
88 1zq9_A Probable dimethyladenos 48.2 19 0.00064 28.3 4.1 33 41-74 247-279 (285)
89 2w9m_A Polymerase X; SAXS, DNA 46.9 8.1 0.00028 34.1 1.9 26 26-52 94-119 (578)
90 3fsp_A A/G-specific adenine gl 45.9 8.8 0.0003 31.7 1.9 23 27-49 116-138 (369)
91 2xhi_A N-glycosylase/DNA lyase 45.0 9.3 0.00032 31.9 1.9 42 26-71 250-292 (360)
92 2i5h_A Hypothetical protein AF 45.0 11 0.00037 29.6 2.1 20 29-48 132-151 (205)
93 2kp7_A Crossover junction endo 41.4 13 0.00045 24.9 1.9 19 31-49 60-78 (87)
94 1cyi_A Cytochrome C6, cytochro 39.8 10 0.00035 23.9 1.1 17 58-74 65-81 (90)
95 2zet_C Melanophilin; complex, 39.4 35 0.0012 25.1 4.2 21 54-74 11-31 (153)
96 1kx2_A Mono-heme C-type cytoch 39.1 21 0.00073 22.2 2.6 17 58-74 63-79 (81)
97 1gks_A Cytochrome C551; haloph 38.8 19 0.00067 22.3 2.4 17 58-74 60-76 (78)
98 3n5n_X A/G-specific adenine DN 38.8 13 0.00045 30.2 1.9 41 28-72 127-168 (287)
99 4gfj_A Topoisomerase V; helix- 38.4 14 0.00048 32.6 2.0 23 28-50 467-489 (685)
100 2bcq_A DNA polymerase lambda; 37.5 10 0.00035 31.3 1.0 41 30-72 58-98 (335)
101 1cc5_A Cytochrome C5; electron 37.2 34 0.0012 21.6 3.4 16 59-74 67-82 (83)
102 2d0s_A Cytochrome C, cytochrom 37.0 24 0.00081 21.6 2.5 17 58-74 61-77 (79)
103 1im4_A DBH; DNA polymerase PAL 35.7 24 0.00081 27.1 2.8 29 30-62 185-213 (221)
104 1c6r_A Cytochrome C6; electron 34.4 17 0.00057 22.7 1.5 17 58-74 66-82 (89)
105 1c75_A Cytochrome C-553; heme, 33.9 29 0.001 20.8 2.6 20 55-74 50-69 (71)
106 1zbd_B Rabphilin-3A; G protein 33.7 25 0.00084 25.4 2.5 22 53-74 3-24 (134)
107 1jx4_A DNA polymerase IV (fami 32.8 32 0.0011 27.9 3.3 36 31-67 180-215 (352)
108 1wh7_A ZF-HD homeobox family p 31.7 20 0.00068 23.4 1.5 15 59-73 23-37 (80)
109 2exv_A Cytochrome C-551; alpha 31.6 32 0.0011 20.9 2.5 20 55-74 61-80 (82)
110 1c53_A Cytochrome C553; electr 31.6 25 0.00085 21.6 2.0 17 58-74 62-78 (79)
111 1yub_A Ermam, rRNA methyltrans 31.6 23 0.00078 26.8 2.1 30 45-74 211-240 (245)
112 2ihm_A POL MU, DNA polymerase 31.4 9.4 0.00032 31.8 -0.2 21 30-50 62-82 (360)
113 2fmp_A DNA polymerase beta; nu 31.2 6.1 0.00021 32.7 -1.4 21 30-50 58-78 (335)
114 3bqs_A Uncharacterized protein 30.3 34 0.0012 23.1 2.6 23 30-53 5-27 (93)
115 2zxy_A Cytochrome C552, cytoch 30.1 33 0.0011 20.9 2.4 17 58-74 69-85 (87)
116 3ph2_B Cytochrome C6; photosyn 29.8 35 0.0012 20.8 2.4 17 58-74 64-80 (86)
117 2i0z_A NAD(FAD)-utilizing dehy 29.8 55 0.0019 27.0 4.3 38 37-74 331-368 (447)
118 1ayg_A Cytochrome C-552; elect 29.6 35 0.0012 20.9 2.4 20 55-74 59-78 (80)
119 3o0r_C Nitric oxide reductase 29.4 30 0.001 23.9 2.3 20 55-74 112-131 (146)
120 2dmp_A Zinc fingers and homeob 29.0 12 0.00042 24.7 0.1 19 56-74 16-34 (89)
121 1jms_A Terminal deoxynucleotid 28.9 11 0.00038 31.7 -0.2 21 30-50 81-101 (381)
122 1ci4_A Protein (barrier-TO-aut 28.8 36 0.0012 23.1 2.4 24 29-53 18-41 (89)
123 2h1r_A Dimethyladenosine trans 28.2 53 0.0018 25.9 3.8 32 42-74 260-291 (299)
124 3bq0_A POL IV, DBH, DNA polyme 28.0 31 0.0011 28.0 2.4 36 31-67 181-216 (354)
125 1wh5_A ZF-HD homeobox family p 27.9 13 0.00043 24.2 0.0 16 59-74 23-38 (80)
126 3e1s_A Exodeoxyribonuclease V, 27.8 12 0.00042 32.8 -0.1 26 29-54 44-69 (574)
127 3mfi_A DNA polymerase ETA; DNA 27.6 19 0.00066 31.4 1.2 29 29-57 307-335 (520)
128 1ls9_A Cytochrome C6; omega lo 27.3 40 0.0014 21.0 2.4 17 58-74 68-84 (91)
129 3dmi_A Cytochrome C6; electron 27.3 41 0.0014 20.6 2.4 16 59-74 66-81 (88)
130 3dr0_A Cytochrome C6; photosyn 27.0 37 0.0013 20.9 2.2 17 58-74 70-86 (93)
131 1a56_A C-551, ferricytochrome 27.0 29 0.001 21.3 1.7 17 58-74 63-79 (81)
132 1i4w_A Mitochondrial replicati 26.7 17 0.00059 30.2 0.6 63 8-74 269-332 (353)
133 1dgs_A DNA ligase; AMP complex 26.7 17 0.00059 33.0 0.7 34 33-66 445-478 (667)
134 4dez_A POL IV 1, DNA polymeras 26.6 31 0.001 28.1 2.1 37 30-67 179-215 (356)
135 1cno_A Cytochrome C552; electr 26.4 44 0.0015 20.8 2.5 17 58-74 65-81 (87)
136 1gdv_A Cytochrome C6; RED ALGA 26.1 44 0.0015 20.2 2.4 16 59-74 64-79 (85)
137 2da5_A Zinc fingers and homeob 26.1 19 0.00063 22.9 0.6 19 56-74 10-28 (75)
138 1vqz_A Lipoate-protein ligase, 26.0 51 0.0017 27.0 3.4 45 40-89 212-256 (341)
139 1f1f_A Cytochrome C6; heme, pr 25.9 44 0.0015 20.5 2.4 17 58-74 67-83 (89)
140 2bgw_A XPF endonuclease; hydro 25.8 30 0.001 26.1 1.9 21 30-50 195-215 (219)
141 3cu4_A Cytochrome C family pro 25.0 45 0.0015 20.5 2.3 16 59-74 67-82 (85)
142 2djn_A Homeobox protein DLX-5; 24.6 16 0.00056 22.7 0.1 18 57-74 11-28 (70)
143 2owo_A DNA ligase; protein-DNA 24.3 32 0.0011 31.2 2.0 36 32-67 449-484 (671)
144 3osn_A DNA polymerase IOTA; ho 23.9 28 0.00095 29.4 1.4 36 31-67 236-271 (420)
145 2c8m_A Lipoate-protein ligase 23.9 33 0.0011 26.7 1.8 42 40-85 213-254 (262)
146 1whz_A Hypothetical protein; a 23.5 56 0.0019 20.2 2.5 17 36-52 47-63 (70)
147 3ivp_A Putative transposon-rel 23.3 85 0.0029 21.0 3.7 21 35-55 50-70 (126)
148 1uhs_A HOP, homeodomain only p 23.2 19 0.00066 22.5 0.2 15 59-73 7-21 (72)
149 4dpp_A DHDPS 2, dihydrodipicol 23.1 98 0.0034 25.8 4.6 46 38-86 295-343 (360)
150 1cch_A Cytochrome C551; electr 23.1 53 0.0018 19.8 2.3 16 59-74 65-80 (82)
151 2cue_A Paired box protein PAX6 23.0 18 0.00063 23.1 0.1 16 59-74 13-28 (80)
152 1wve_C 4-cresol dehydrogenase 23.0 71 0.0024 19.6 3.0 17 58-74 56-72 (80)
153 2zzs_A Cytochrome C554; C-type 22.9 55 0.0019 20.9 2.5 17 58-74 85-101 (103)
154 3dp5_A OMCF, cytochrome C fami 22.5 53 0.0018 21.3 2.4 16 59-74 81-96 (99)
155 2llk_A Cyclin-D-binding MYB-li 22.4 74 0.0025 20.4 3.0 25 50-74 16-40 (73)
156 3im1_A Protein SNU246, PRE-mRN 22.4 32 0.0011 27.7 1.4 44 30-74 158-212 (328)
157 2ce0_A Cytochrome C6; chloropl 21.9 53 0.0018 20.9 2.3 17 58-74 77-93 (105)
158 1qa6_A Ribosomal protein L11; 21.8 98 0.0034 19.6 3.4 34 40-73 4-43 (67)
159 2zon_G Cytochrome C551; nitrit 21.2 61 0.0021 19.9 2.4 16 59-74 69-84 (87)
160 2dmt_A Homeobox protein BARH-l 21.0 16 0.00055 23.4 -0.5 16 59-74 23-38 (80)
161 2cra_A Homeobox protein HOX-B1 20.9 16 0.00054 22.8 -0.6 17 58-74 12-28 (70)
162 1w2l_A Cytochrome oxidase subu 20.8 61 0.0021 20.3 2.4 17 58-74 81-97 (99)
163 2k6m_S Supervillin; SVHP, HP, 20.6 44 0.0015 21.4 1.6 34 49-83 22-55 (67)
164 3hil_A Ephrin type-A receptor 20.5 72 0.0025 20.7 2.7 34 34-67 30-63 (82)
165 3m5v_A DHDPS, dihydrodipicolin 20.5 1.5E+02 0.005 23.6 5.0 37 38-74 255-295 (301)
166 1b22_A DNA repair protein RAD5 20.2 49 0.0017 23.1 1.9 17 31-47 60-76 (114)
167 1yz8_P Pituitary homeobox 2; D 20.2 23 0.0008 21.8 0.2 17 58-74 8-24 (68)
168 2dms_A Homeobox protein OTX2; 20.1 18 0.00062 23.1 -0.4 17 58-74 12-28 (80)
No 1
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.7e-69 Score=414.49 Aligned_cols=152 Identities=88% Similarity=1.352 Sum_probs=150.6
Q ss_pred ccCCCccchhhhhhhcCccCCCCeeeeeehhhccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCCCCccCC
Q 031787 2 KSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIP 81 (153)
Q Consensus 2 ~~~~~~~~~~~~vri~~~~l~~~k~i~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~L~~~i~~~~~~~ip 81 (153)
|||+.+|+||||+||+|||||++|.|.+|||+|||||+.+|..||+.+||||++++++||++|+++|.++|++|.+|++|
T Consensus 1 ~~~~~~~~~~~m~RI~g~~i~~~k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~~~~~~~ip 80 (152)
T 3iz6_M 1 MSLIAGEEFQHILRVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHNPRQFKVP 80 (152)
T ss_dssp CCCCTTCSCCCCCCTTTTCCCCSSBHHHHHTTSTTCCHHHHHHHHHHHTCCSSSBTTTSCHHHHHHHHHHHHSCSSCCCC
T ss_pred CCcccHHHHHHHHHHcCCcCCCCcEeHhhhhhccCcCHHHHHHHHHHcCCCCCcEeCcCCHHHHHHHHHHHHhhcccCcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999899999
Q ss_pred ccccCccCCcCCCcchhhhhhhHHHHHHHhhhhhhccceeecccCCCCCccCCcCCcccCCCccceeeeccC
Q 031787 82 DWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153 (153)
Q Consensus 82 ~w~~nr~kd~~tg~~~~li~~dL~~~~~~~I~rl~~i~syRG~RH~~gLpvRGQRT~tNart~~~~~v~~~~ 153 (153)
+||+||++|++||++.|++|+||++++++||+||++|+||||+||.+||||||||||||||||+||||+|||
T Consensus 81 ~w~lNr~kD~~~G~~~~li~~dL~~~~~~dI~RL~~I~~yRG~RH~~GLpVRGQrTkTnaRtg~tvgv~kkk 152 (152)
T 3iz6_M 81 DWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHYWGVRVRGQHTKTTGRRGKTVGVSKKR 152 (152)
T ss_dssp CCSCSCCCSCCCCSCCTTCTHHHHHHHHHHHHHHHHHTCHHHHHHHHTCCSSCCCCSSCCHHHHCSCCSSCC
T ss_pred hhhhhhhcccCCcceeeechhHHHHHHHHhHHHHhhhheeecccccCCCCcCCcCCcCCCCCceecceecCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997
No 2
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=100.00 E-value=1.5e-68 Score=410.38 Aligned_cols=152 Identities=55% Similarity=0.935 Sum_probs=149.3
Q ss_pred ccCCCcc--chhhhhhhcCccCCCCeeeeeehhhccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCCCCcc
Q 031787 2 KSLVANE--DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFK 79 (153)
Q Consensus 2 ~~~~~~~--~~~~~vri~~~~l~~~k~i~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~L~~~i~~~~~~~ 79 (153)
|||+.++ +||||+||+|||||++|.|.+|||+|||||..+|..||+.+||||++++++||++|+++|.++|++|.+|+
T Consensus 1 m~~~~~~~~~f~~m~RI~g~~l~~~k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i~~p~~~~ 80 (155)
T 2xzm_M 1 MSFVIEKESDFKYIHRILNTNIDGKRITPIALTGIRGIGRRFAYIICKVLKIDPNARAGLLTEDQCNKITDLIADPEAHG 80 (155)
T ss_dssp CCCCSSTTTSSCSCCEETTTEECCSSCHHHHHTTSTTCCHHHHHHHHHHTTCCSSSCSSCSCHHHHHHHHHHHHSHHHHC
T ss_pred CCccccchHhhhhhHheeCccCCCCCEEEEeeecccccCHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHhCccccC
Confidence 6888666 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCccCCcCCCcchhhhhhhHHHHHHHhhhhhhccceeecccCCCCCccCCcCCcccCCCccceeeeccC
Q 031787 80 IPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153 (153)
Q Consensus 80 ip~w~~nr~kd~~tg~~~~li~~dL~~~~~~~I~rl~~i~syRG~RH~~gLpvRGQRT~tNart~~~~~v~~~~ 153 (153)
||+||+||++|+.||++.|+||+||++++++||+||++|+||||+||.+||||||||||||||||++|||+|||
T Consensus 81 iP~w~lNr~kD~~~G~~~~~ie~dLr~~~~~dI~Rl~~I~~yRG~RH~~GLpVRGQRTkTnaRtg~tvGv~kkk 154 (155)
T 2xzm_M 81 IPTWLLNRINDFKDGKNYQMASNTLDTKMREDLERLKKIKSHRGLRHFWGLKVRGQHTKTSGRHGVVCGVVRKN 154 (155)
T ss_dssp CCGGGCSEEEETTTEEEECCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHTCCSSSCCCSSSSCSSCCCSSCCCC
T ss_pred CCHHHhhcccccCCCceeEEecHHHHHHHHHhHHHHhhhceeeeeecccCCCcCCcCCccCCCCcccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997
No 3
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.6e-67 Score=402.04 Aligned_cols=146 Identities=43% Similarity=0.795 Sum_probs=144.0
Q ss_pred cchhhhhhhcCccCCCCeeeeeehhhccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCCCCccCCccccCc
Q 031787 8 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNR 87 (153)
Q Consensus 8 ~~~~~~vri~~~~l~~~k~i~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~L~~~i~~~~~~~ip~w~~nr 87 (153)
++||||+||+|||||++|.|.+|||+|||||.++|..||+.+||||++++++||++|+++|.++|++|.+|+||+||+||
T Consensus 2 ~~~~~m~RI~g~~i~~~k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~i~~~i~~~~~~~iP~w~lNr 81 (148)
T 3j20_O 2 ANFRHIVRVAGVDLDGNKQLRWALTAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILADPVAHGIPRWAVNR 81 (148)
T ss_dssp CCBCSCEECSSSCEECSSCHHHHHHHSTTCCHHHHHHHHHHHTCCSSSCTTBCCHHHHHHHHHHHHCHHHHCCCTTTSSE
T ss_pred hhhhHhHHHcCccCCCCCEehhhhhhccCcCHHHHHHHHHHhCCCCCceeccCCHHHHHHHHHHHhcccccCCChhhhcc
Confidence 57999999999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred cCCcCCCcchhhhhhhHHHHHHHhhhhhhccceeecccCCCCCccCCcCCcccCCCccceeeeccC
Q 031787 88 QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153 (153)
Q Consensus 88 ~kd~~tg~~~~li~~dL~~~~~~~I~rl~~i~syRG~RH~~gLpvRGQRT~tNart~~~~~v~~~~ 153 (153)
++|++||++.|+||+||++++++||+||++|+||||+||.+||||||||||||||||+||||+|||
T Consensus 82 ~kD~~~G~~~~~ve~dL~~~~~~dI~RL~~I~~yRG~RH~~GLpVRGQrTkTnaR~g~tvgv~kkk 147 (148)
T 3j20_O 82 PKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRGQRTRSNFRRGQTVGVSRKK 147 (148)
T ss_dssp EEETTTEEEECCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHTCCSSSCCCSSCSCSSCCCCCSSCC
T ss_pred cCCCCCCceeEEechHHHHHHHHHHHHHHHhCcEEeecccCCCcCCCCCCcCCCCcCcccceeccC
Confidence 999999999999999999999999999999999999999999999999999999999999999987
No 4
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=100.00 E-value=7.4e-65 Score=386.61 Aligned_cols=144 Identities=66% Similarity=1.111 Sum_probs=140.7
Q ss_pred ccCCCcc--chhhhhhhcCccCCCCeeeeeehhhccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCCCCcc
Q 031787 2 KSLVANE--DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFK 79 (153)
Q Consensus 2 ~~~~~~~--~~~~~vri~~~~l~~~k~i~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~L~~~i~~~~~~~ 79 (153)
|||+.++ +||||+||+|||||++|.|.+|||+|||||.++|..||+++||||++++++||++|+++|.++|++|.+|+
T Consensus 1 ~~~~~~~~~~~~~~~RI~g~~i~~~k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~~~~~~~ 80 (146)
T 3u5c_S 1 MSLVVQEQGSFQHILRLLNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQNPTHYK 80 (146)
T ss_dssp -CCCCCCCSCCCSSBCCTTSCBCSSSCTTTTGGGSTTCCHHHHHHHHHHHTCCTTSCSSSCCHHHHHHHHHHHTCTTTTT
T ss_pred CCccCCCHHHhhhhhhhcCccCCCCcchHhhHhhhcCCCHHHHHHHHHHcCCCCCceeccCCHHHHHHHHHHHHhhcccC
Confidence 6999777 89999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred CCccccCccCCcCCCcchhhhhhhHHHHHHHhhhhhhccceeecccCCCCCccCCcCCcccCCCcc
Q 031787 80 IPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGK 145 (153)
Q Consensus 80 ip~w~~nr~kd~~tg~~~~li~~dL~~~~~~~I~rl~~i~syRG~RH~~gLpvRGQRT~tNart~~ 145 (153)
+|+||+||++|++||++.|+||+||++++++||+||++|+||||+||.+||||||||||||||+|+
T Consensus 81 iP~w~lNR~kD~~~G~~~~lie~dL~~~~~~dI~RL~~I~~yRG~RH~~GLpVRGQrTkTnaR~g~ 146 (146)
T 3u5c_S 81 IPAWFLNRQNDITDGKDYHTLANNVESKLRDDLERLKKIRAHRGIRHFWGLRVRGQHTKTTGRRRA 146 (146)
T ss_dssp CCSTTCTBCSCSSSCCCBCCCTHHHHHHHHHHHHHHHHHTCHHHHHHHTTCCCSCCCCSSSCCSCC
T ss_pred ccHHHhhhhhcccccchheeehHHHHHHHHHhhHHHHhhceeeeecccCCCCCCccCCCcCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999985
No 5
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=100.00 E-value=1.1e-48 Score=291.27 Aligned_cols=111 Identities=32% Similarity=0.483 Sum_probs=106.2
Q ss_pred hhhhcCccCCCCeeeeeehhhccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCCCCccCCccccCccCCcC
Q 031787 13 ILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYK 92 (153)
Q Consensus 13 ~vri~~~~l~~~k~i~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~L~~~i~~~~~~~ip~w~~nr~kd~~ 92 (153)
|+||+|||||++|.|.+|||+|||||..+|..||+.+||||++++++||++|+++|.++|++ +|
T Consensus 1 m~rI~g~~i~~~k~v~~aLt~I~GIG~~~A~~I~~~~gi~~~~r~~~Lt~~ei~~l~~~i~~--~~-------------- 64 (126)
T 2vqe_M 1 MARIAGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVEN--TW-------------- 64 (126)
T ss_dssp -CCCSTTCCCCSSBHHHHHTTSSSCCSHHHHHHTTTTTCCTTSBGGGCCHHHHHHHHHHHHT--TS--------------
T ss_pred CceEeCccCCCCcEeeeehhccccccHHHHHHHHHHcCCCcccccCcCCHHHHHHHHHHHHH--hC--------------
Confidence 79999999999999999999999999999999999999999999999999999999999986 24
Q ss_pred CCcchhhhhhhHHHHHHHhhhhhhccceeecccCCCCCccCCcCCcccCCCcc
Q 031787 93 DGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGK 145 (153)
Q Consensus 93 tg~~~~li~~dL~~~~~~~I~rl~~i~syRG~RH~~gLpvRGQRT~tNart~~ 145 (153)
++|+||++++++||+||++|+||||+||.+|||||||||||||||++
T Consensus 65 ------~ve~dLrr~~~~nIkRL~~I~~YRG~RH~~GLPVRGQRTkTNaRTrk 111 (126)
T 2vqe_M 65 ------KLEGELRAEVAANIKRLMDIGCYRGLRHRRGLPVRGQRTRTNARTRK 111 (126)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSSSCCCSSCCHHHH
T ss_pred ------cchhHHHHHHHHHHHHHHHHHHHhhhhhccCCcCCCccCccccccCC
Confidence 46999999999999999999999999999999999999999999875
No 6
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=100.00 E-value=2.4e-47 Score=279.84 Aligned_cols=109 Identities=35% Similarity=0.508 Sum_probs=105.0
Q ss_pred hhhcCccCCCCeeeeeehhhccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCCCCccCCccccCccCCcCC
Q 031787 14 LRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKD 93 (153)
Q Consensus 14 vri~~~~l~~~k~i~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~L~~~i~~~~~~~ip~w~~nr~kd~~t 93 (153)
.||+|||||++|.|.+|||+|||||+.+|..||+.+||||++++++||++|+++|.++|++ |.
T Consensus 1 ~RI~g~~i~~~k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i~~---~~-------------- 63 (114)
T 3r8n_M 1 ARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAK---FV-------------- 63 (114)
T ss_dssp CCTTSSCCCCSSCHHHHGGGSTTCCHHHHHHHHHHTTCCTTCCSTTCCHHHHHHHHHHHSS---SC--------------
T ss_pred CeeCCccCCCCCEeHhhHhhhcCcCHHHHHHHHHHcCcCcccCcccCCHHHHHHHHHHHHH---hc--------------
Confidence 4899999999999999999999999999999999999999999999999999999999954 65
Q ss_pred CcchhhhhhhHHHHHHHhhhhhhccceeecccCCCCCccCCcCCcccCCCcc
Q 031787 94 GKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGK 145 (153)
Q Consensus 94 g~~~~li~~dL~~~~~~~I~rl~~i~syRG~RH~~gLpvRGQRT~tNart~~ 145 (153)
||+||++++++||+||++|+||||+||.+|||||||||||||||+|
T Consensus 64 ------ie~dLr~~~~~dI~RL~~I~~yRG~RH~~GLpVRGQrTkTnaRTrk 109 (114)
T 3r8n_M 64 ------VEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRK 109 (114)
T ss_dssp ------TTHHHHHHHHHHHHHHHHHTCHHHHHHHTTSCCSSCCSSSCCHHHH
T ss_pred ------chHHHHHHHHHHHHHHHHhceeeeecccCCCCCCCCCCCCcccccC
Confidence 4899999999999999999999999999999999999999999986
No 7
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=3.4e-44 Score=271.69 Aligned_cols=109 Identities=31% Similarity=0.397 Sum_probs=92.3
Q ss_pred cCCCccchh------hhhhhcCccCCCCeeeeeehhhccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCCC
Q 031787 3 SLVANEDFQ------HILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPR 76 (153)
Q Consensus 3 ~~~~~~~~~------~~vri~~~~l~~~k~i~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~L~~~i~~~~ 76 (153)
|...+++|+ ||+||+|||||++|.|.+||++|||||..+|.+||+.+|| +++++++|+|+|+++|.++
T Consensus 30 ~~~~~~~~~~~~~~~~m~RI~gvdlp~~K~v~~aLt~IyGIG~~~A~~I~~~~gI-~~~rv~~Lte~ei~~l~~~----- 103 (145)
T 3bbn_M 30 PAPKKGGIGHGGLQIECIRIGGVEIPNHKRVEYSLQYIHGIGRSRSRQILLDLNF-DNKVTKDLSEEEVIILRKE----- 103 (145)
T ss_dssp -----------------CCCSSSCCCCSSBTTTGGGGSTTCCSSTTTGGGTTTTC-CSCBTTSCCSSTTHHHHSS-----
T ss_pred ccCCchhhhcccchhheeeEeCcccCCCCEEEEeeeeecCccHHHHHHHHHHcCC-CceEcCCCCHHHHHHHHHH-----
Confidence 344567899 8999999999999999999999999999999999999999 7999999999999998864
Q ss_pred CccCCccccCccCCcCCCcchhhhhhhHHHHHHHhhhhhhccceeecccCCCCCccCCcCCcccCCCcc
Q 031787 77 QFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGK 145 (153)
Q Consensus 77 ~~~ip~w~~nr~kd~~tg~~~~li~~dL~~~~~~~I~rl~~i~syRG~RH~~gLpvRGQRT~tNart~~ 145 (153)
++++++||+||++|+||||+||.+|||||||||||||||.|
T Consensus 104 ----------------------------Rr~v~~nIkRL~~I~~YRGlRH~~GLPVRGQRTkTNaRTrK 144 (145)
T 3bbn_M 104 ----------------------------KRFNRVAIERLKEIRCYRGIRHKLGLPVRGQRTKNNCRTLK 144 (145)
T ss_dssp ----------------------------CCCCSTTTHHHHCCCCSCCTTTTTTCCSSSCCTTTCCCSSC
T ss_pred ----------------------------HHHHHHHHHHHhhhceEeeeecccCCcCCCccCccccccCC
Confidence 12246899999999999999999999999999999999976
No 8
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=98.41 E-value=1.8e-07 Score=81.96 Aligned_cols=106 Identities=18% Similarity=0.236 Sum_probs=85.7
Q ss_pred chhhhhhhcCccCCCCeeeeeehhhccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCCCCcc-CCccccCc
Q 031787 9 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFK-IPDWFLNR 87 (153)
Q Consensus 9 ~~~~~vri~~~~l~~~k~i~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~L~~~i~~~~~~~-ip~w~~nr 87 (153)
++-.+++++...=..-+...|....|.+||..+|.+||+.+|++|.+++.+|+++|+..|.+++.+ ++ + ..+
T Consensus 238 ~l~~~~~~~~~~~~~~~~~~fl~~~f~~v~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~----~~p 310 (471)
T 1mu5_A 238 DREEIKILINNLKRDYTIKEFLVNEFQSIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETFKK---YEDF----RSP 310 (471)
T ss_dssp CHHHHHHHSTTCSSCCBHHHHHTTSSSSCCHHHHHHHHHHTTCCTTSBGGGCCTTHHHHHHHHHHH---CCCC----CCC
T ss_pred hHHHHHHHHHhcCCCcchHHhhhccccccCHHHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHHHh---ccCc----cCC
Confidence 455555655432222244466668899999999999999999999999999999999999999987 43 3 578
Q ss_pred cCCcCCCcchhhhhhhHHHHHHHh----hhhhhccceeec
Q 031787 88 QKDYKDGKYSQVVSNALDMKLRDD----LERLKKIRNHRG 123 (153)
Q Consensus 88 ~kd~~tg~~~~li~~dL~~~~~~~----I~rl~~i~syRG 123 (153)
+.|++++.+..+++..|+..+..+ ++| ..+.|+|
T Consensus 311 ~~~~lspig~~~~~~g~~~~~~~~f~~~~~r--~~~~~~g 348 (471)
T 1mu5_A 311 SADSLSVIGEDLIELGLKKIFNPDFAASITR--KPKAYQG 348 (471)
T ss_dssp CSTTCCCCCHHHHHHHHHHHHCCSEEEEEEC--CCEEETT
T ss_pred CccccCcCCHHHHHhhhhhccCceEEEEEec--CCceecC
Confidence 999999999999999999888876 566 7788887
No 9
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=97.72 E-value=2.4e-05 Score=69.54 Aligned_cols=89 Identities=18% Similarity=0.226 Sum_probs=77.6
Q ss_pred eeeeehhhccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCCCCcc-CCccccCccCCcCCCcchhhhhhhH
Q 031787 26 KIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFK-IPDWFLNRQKDYKDGKYSQVVSNAL 104 (153)
Q Consensus 26 ~i~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~L~~~i~~~~~~~-ip~w~~nr~kd~~tg~~~~li~~dL 104 (153)
...|.-..+.++|...|..||+.+|+++..+..+|+.+++..+.+++.+ ++ + ..++.|+++|.+..+++..|
T Consensus 254 l~~fl~~~ft~~g~~~a~~~~~~~gl~~~~~~~~l~~~~~~~ll~a~~~---~k~~----~~P~~~~lspig~~~~~~g~ 326 (530)
T 2zbk_B 254 IKEFLVNEFQSIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETFKK---DEDF----RSPSADSLSVIGEDLIELGL 326 (530)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHTTCCSSCBSSCCCHHHHHHHHHHHHH---CCCC----CCCCSTTCCCCCTTHHHHHT
T ss_pred eHhhhcCccccccHHHHHHHHHhhCCCCCCCcccCCHHHHHHHHHHHHh---ccCC----CCCCccccCcCCHHHHHhhH
Confidence 3366667899999999999999999999999999999999999999986 54 4 57899999999999999999
Q ss_pred HHHHHHh----hhhhhccceeec
Q 031787 105 DMKLRDD----LERLKKIRNHRG 123 (153)
Q Consensus 105 ~~~~~~~----I~rl~~i~syRG 123 (153)
+..+..+ ++| ..+.|+|
T Consensus 327 ~~~~~~~f~~~~~r--~~~~~~g 347 (530)
T 2zbk_B 327 KKIFNPDFAASITR--KPKAYQG 347 (530)
T ss_dssp TTTTCCSEEEEEEC--CCEEETT
T ss_pred HhhcCceEEEEEcc--CCceecC
Confidence 9887775 566 7778877
No 10
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=96.03 E-value=0.0061 Score=49.38 Aligned_cols=50 Identities=24% Similarity=0.308 Sum_probs=44.0
Q ss_pred eeeeeeh---hhccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 031787 25 QKIMFAL---TSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 74 (153)
Q Consensus 25 k~i~~aL---t~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~L~~~i~~ 74 (153)
.+|.-+| +-|-|||.-.|.++|-.+||+|..++++|+++|++.|.+.|..
T Consensus 151 ~~Ik~~LLDQ~vvaGiGNiYadEiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~~ 203 (262)
T 1k3x_A 151 RQFAGLLLDQAFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLE 203 (262)
T ss_dssp SCHHHHTTCTTTSBTCCHHHHHHHHHHHTCCSSCCGGGSCHHHHHHHHHHHHH
T ss_pred ccHHHHHhcCCeeecccHHHHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHHH
Confidence 5666566 3479999999999999999999999999999999999998854
No 11
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=96.00 E-value=0.0064 Score=49.41 Aligned_cols=52 Identities=17% Similarity=0.179 Sum_probs=45.3
Q ss_pred CCeeeeeeh---hhccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 031787 23 GKQKIMFAL---TSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 74 (153)
Q Consensus 23 ~~k~i~~aL---t~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~L~~~i~~ 74 (153)
.+.+|.-+| +-|-|||.-.|.++|=.+||+|..++++|+++|++.|.+.+..
T Consensus 142 ~~~~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~~~~Ls~~~~~~L~~~i~~ 196 (266)
T 1ee8_A 142 SARPLKALLLDQRLAAGVGNIYADEALFRARLSPFRPARSLTEEEARRLYRALRE 196 (266)
T ss_dssp CCSBHHHHHHHSSSSTTCCHHHHHHHHHHTTCCSSSBGGGCCHHHHHHHHHHHHH
T ss_pred CCccHHHHHhccCccccccHhHHHHHHHHcCCCCCCCcccCCHHHHHHHHHHHHH
Confidence 356676666 4589999999999999999999999999999999999888754
No 12
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=95.98 E-value=0.0064 Score=49.44 Aligned_cols=52 Identities=27% Similarity=0.223 Sum_probs=45.5
Q ss_pred CCeeeeeeh---hhccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 031787 23 GKQKIMFAL---TSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 74 (153)
Q Consensus 23 ~~k~i~~aL---t~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~L~~~i~~ 74 (153)
.+.+|.-+| +-|-|||.-.|.++|=.+||+|..++++|+++|++.|.+.+..
T Consensus 149 ~~~~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~~ 203 (268)
T 1k82_A 149 KKTAIKPWLMDNKLVVGVGNIYASESLFAAGIHPDRLASSLSLAECELLARVIKA 203 (268)
T ss_dssp CCSBHHHHHTCTTTCSSCCHHHHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHhcCCeeeccCchHHHHHHHHcCCCCCCCcccCCHHHHHHHHHHHHH
Confidence 356776666 4589999999999999999999999999999999999888754
No 13
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=95.97 E-value=0.0066 Score=49.40 Aligned_cols=52 Identities=21% Similarity=0.230 Sum_probs=45.3
Q ss_pred CCeeeeeeh---hhccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 031787 23 GKQKIMFAL---TSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 74 (153)
Q Consensus 23 ~~k~i~~aL---t~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~L~~~i~~ 74 (153)
.+.+|.-+| +-|-|||.-.|.++|=.+||+|..++++|+++|++.|.+.+..
T Consensus 152 ~~~~IK~~LLDQ~vvaGiGNiYadEiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~~ 206 (271)
T 2xzf_A 152 STKKIKPYLLEQTLVAGLGNIYVDEVLWLAKIHPEKETNQLIESSIHLLHDSIIE 206 (271)
T ss_dssp CCSBHHHHHHTSSSSSCCCHHHHHHHHHHTTCCTTCBGGGCCHHHHHHHHHHHHH
T ss_pred CCccHHHHHhcCCeecccChhHHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHHH
Confidence 356676666 4589999999999999999999999999999999999888754
No 14
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=95.92 E-value=0.0075 Score=49.20 Aligned_cols=52 Identities=21% Similarity=0.257 Sum_probs=45.8
Q ss_pred CCeeeeeeh---hhccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 031787 23 GKQKIMFAL---TSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 74 (153)
Q Consensus 23 ~~k~i~~aL---t~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~L~~~i~~ 74 (153)
.+.+|.-+| +-|-|||.-.|.++|=.+||+|..++++|+++|++.|.+.+..
T Consensus 154 ~~~~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~~~~Ls~~~~~~L~~~i~~ 208 (273)
T 3u6p_A 154 TKRSVKALLLDCTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVA 208 (273)
T ss_dssp CCSBHHHHHHCTTTSTTCCHHHHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred CcchHHHHHhcCCccccccHHHHHHHHHHcCCCccCccccCCHHHHHHHHHHHHH
Confidence 366676666 5599999999999999999999999999999999999998854
No 15
>3twl_A Formamidopyrimidine-DNA glycosylase 1; helix two turns helix, zinc-LESS finger, hydrolase, DNA DAMA repair, DNA-binding, glycosidase, lyase; 1.70A {Arabidopsis thaliana} PDB: 3twm_A* 3twk_A
Probab=95.81 E-value=0.0086 Score=49.77 Aligned_cols=52 Identities=27% Similarity=0.278 Sum_probs=45.3
Q ss_pred CCeeeeeeh---hhccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 031787 23 GKQKIMFAL---TSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 74 (153)
Q Consensus 23 ~~k~i~~aL---t~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~L~~~i~~ 74 (153)
.+.+|.-+| +-|-|||.-+|.++|-++||+|..++++|+++|++.|.+.+..
T Consensus 167 ~~~~IK~~LLDQ~vvaGIGNiYadEiLf~AgIhP~~~a~~Ls~~e~~~L~~~i~~ 221 (310)
T 3twl_A 167 KKITIKPLLLDQGYISGIGNWIADEVLYQARIHPLQTASSLSKEQCEALHTSIKE 221 (310)
T ss_dssp CCSBHHHHHHCTTTSBSCCHHHHHHHHHHTTCCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred CcchHHHHHhcCccccCCcHHHHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHHH
Confidence 456776666 4489999999999999999999999999999999999888754
No 16
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=95.79 E-value=0.0085 Score=49.51 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=45.4
Q ss_pred Ceeeeeeh---hhccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 031787 24 KQKIMFAL---TSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 74 (153)
Q Consensus 24 ~k~i~~aL---t~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~L~~~i~~ 74 (153)
+.+|..+| +-|-|||...|.++|-.+||+|..++++|+++|++.|.+++.+
T Consensus 174 ~~~IK~~LLDQ~viaGiGNIYa~EiLf~AgI~P~~~~~~Ls~~~~~~L~~ai~~ 227 (287)
T 3w0f_A 174 DRMLCDVLLDQRVLPGVGNIIKNEALFDSGLHPAVKVCQLSDKQACHLVKMTRD 227 (287)
T ss_dssp SSBHHHHHHCTTTSTTCCHHHHHHHHHHHTCCTTCBGGGSCHHHHHHHHHHHHH
T ss_pred cccHHHHHhcCCccccccHHHHHHHHHHccCCccCccccCCHHHHHHHHHHHHH
Confidence 44566555 4589999999999999999999999999999999999999875
No 17
>3vk8_A Probable formamidopyrimidine-DNA glycosylase; DNA glycosylase, hneil1 ortholog, DNA lesion, thymine glycol zincless finger; HET: DNA CTG; 2.00A {Acanthamoeba polyphaga mimivirus} PDB: 3vk7_A* 3a42_A 3a46_A* 3a45_A*
Probab=95.69 E-value=0.0092 Score=49.24 Aligned_cols=52 Identities=27% Similarity=0.333 Sum_probs=44.9
Q ss_pred CCeeeeeeh---hh-ccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 031787 23 GKQKIMFAL---TS-IKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 74 (153)
Q Consensus 23 ~~k~i~~aL---t~-I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~L~~~i~~ 74 (153)
.+.+|.-+| +- |-|||...|.+||=.+||+|..++++|+++|++.|.+.+..
T Consensus 153 ~~~~Ik~~LLDQ~~~vaGIGNiYa~EiLf~A~I~P~~~~~~Ls~~~~~~L~~~i~~ 208 (295)
T 3vk8_A 153 YKQPIVALLMDQKKIGSGLGNYLVAEILYRAKIDPHKLGSNLTDQEIENLWYWIKY 208 (295)
T ss_dssp CCSBHHHHHHCSSSSCBCCCHHHHHHHHHHTTBCTTCBGGGCCHHHHHHHHHHHHH
T ss_pred cCchHHHHHhcCCcccccccHHHHHHHHHHcCCCccCccccCCHHHHHHHHHHHHH
Confidence 455665555 34 89999999999999999999999999999999999888754
No 18
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=92.67 E-value=0.058 Score=35.36 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=21.8
Q ss_pred CccCCCCeeeeeehhhccccchhhHHHHHHHhC
Q 031787 18 NTNVDGKQKIMFALTSIKGIGRRLANIVCKKAD 50 (153)
Q Consensus 18 ~~~l~~~k~i~~aLt~I~GIG~~~A~~Ic~~lg 50 (153)
|.-+..+......|..|+|||+.+|..|++.+|
T Consensus 13 ~~~~~~~~~~~~~L~~I~gIG~~~A~~Ll~~fg 45 (78)
T 1kft_A 13 GLVPRGSHMNTSSLETIEGVGPKRRQMLLKYMG 45 (78)
T ss_dssp ----------CCGGGGCTTCSSSHHHHHHHHHS
T ss_pred hHHHhHHHHHHHHHhcCCCCCHHHHHHHHHHcC
Confidence 444566777888999999999999999999986
No 19
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=92.49 E-value=0.052 Score=34.68 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=31.9
Q ss_pred ehhhccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHH
Q 031787 30 ALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNL 68 (153)
Q Consensus 30 aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~L 68 (153)
.|..|+|||++.+..+++.+| .-..+.+.|.||+..+
T Consensus 5 ~L~~IpGIG~kr~~~LL~~Fg--s~~~i~~As~eeL~~v 41 (63)
T 2a1j_A 5 FLLKMPGVNAKNCRSLMHHVK--NIAELAALSQDELTSI 41 (63)
T ss_dssp HHHTSTTCCHHHHHHHHHHCS--SHHHHHTCCHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHHcC--CHHHHHHCCHHHHHHH
Confidence 578999999999999999988 4567778888888776
No 20
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=91.20 E-value=0.14 Score=41.25 Aligned_cols=64 Identities=13% Similarity=0.131 Sum_probs=50.9
Q ss_pred cchhhhhhhcCccCCCCeeeeeehhhccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 031787 8 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 74 (153)
Q Consensus 8 ~~~~~~vri~~~~l~~~k~i~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~L~~~i~~ 74 (153)
+.|.++|+.+ .-...|.+..+|..+ |.+...+..+++.+||+++.++.+||.+|+..|.+++++
T Consensus 206 ~~~~~~v~~~--F~~rrKtL~n~L~~~-~~~~~~~~~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~~~ 269 (271)
T 3fut_A 206 PGLFRLVEAA--FGKRRKTLLNALAAA-GYPKARVEEALRALGLPPRVRAEELDLEAFRRLREGLEG 269 (271)
T ss_dssp HHHHHHHHHH--TSSTTSCHHHHHHHT-TCCHHHHHHHHHHTTCCTTCCGGGCCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHH--HhcCCcHHHHHHHhh-cCCHHHHHHHHHHCCcCCCCChhhCCHHHHHHHHHHHHh
Confidence 4567777652 334578888888765 456777889999999999999999999999999998854
No 21
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=88.64 E-value=0.13 Score=34.87 Aligned_cols=42 Identities=14% Similarity=0.123 Sum_probs=33.1
Q ss_pred eeeeeehhhccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHH
Q 031787 25 QKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNL 68 (153)
Q Consensus 25 k~i~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~L 68 (153)
......|..|+|||++.+..|++.+| .-..+.+.|.+|+..+
T Consensus 14 ~~~~s~L~~IpGIG~kr~~~LL~~Fg--Sl~~i~~AS~eEL~~v 55 (84)
T 1z00_B 14 PGPQDFLLKMPGVNAKNCRSLMHHVK--NIAELAALSQDELTSI 55 (84)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHSS--CHHHHHHSCHHHHHHH
T ss_pred ccHHHHHHhCCCCCHHHHHHHHHHcC--CHHHHHHCCHHHHHHH
Confidence 33456789999999999999999988 3456677777777766
No 22
>1tdh_A NEI endonuclease VIII-like 1; helix two turns helix, zinc-LESS finger, hydrolase; 2.10A {Homo sapiens} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=88.45 E-value=0.046 Score=46.52 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=35.2
Q ss_pred Ceeeeeeh---hhccccchhhHHHHHHHhCCCCCCcCCCCCHH
Q 031787 24 KQKIMFAL---TSIKGIGRRLANIVCKKADVDMNKRAGELSAA 63 (153)
Q Consensus 24 ~k~i~~aL---t~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ 63 (153)
+.+|.-+| +-|-|||..+|.++|-.+||+|..++++|+++
T Consensus 158 ~~~IK~~LLDQ~vVAGIGNIYadEiLF~AgIhP~r~a~~Ls~~ 200 (364)
T 1tdh_A 158 DRPICEALLDQRFFNGIGNYLRAEILYRLKIPPFEKARSVLEA 200 (364)
T ss_dssp GSBHHHHTTCTTTSTTCCHHHHHHHHHHHTCCTTSBHHHHHGG
T ss_pred cccHHHHHhcCCeeeccchHHHHHHHHHCcCCCCCChhhcCHH
Confidence 56676666 45899999999999999999999999999887
No 23
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=87.83 E-value=0.26 Score=32.90 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=34.2
Q ss_pred eeeehhhccccchhhHHHHHHHhCC-------CCC--CcCCCCCHHHHHHHHHHHhCC
Q 031787 27 IMFALTSIKGIGRRLANIVCKKADV-------DMN--KRAGELSAAELDNLMVVVANP 75 (153)
Q Consensus 27 i~~aLt~I~GIG~~~A~~Ic~~lgi-------~~~--~kv~~Ls~~ei~~L~~~i~~~ 75 (153)
+..+|..|+|||...|..|++.+|= ++. ..+..+.+.....|..+++++
T Consensus 17 ~~~~L~~IpgIG~~~A~~Ll~~fgsl~~l~~a~~~eL~~i~GIG~~~a~~I~~~l~~~ 74 (89)
T 1z00_A 17 VTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEP 74 (89)
T ss_dssp HHHHHTTSSSCCHHHHHHHHHHTCBHHHHHHCCHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred HHHHHHcCCCCCHHHHHHHHHHCCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999998761 110 233445566667777777664
No 24
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=87.79 E-value=0.39 Score=37.84 Aligned_cols=55 Identities=13% Similarity=0.280 Sum_probs=43.6
Q ss_pred cchhhhhhhcCccCCCCeeeeeehhhccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 031787 8 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 74 (153)
Q Consensus 8 ~~~~~~vri~~~~l~~~k~i~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~L~~~i~~ 74 (153)
+.|.++++.+ .-...|.+.-+|..+ .+..+||+|++++.+||.+|+..|.+++.+
T Consensus 192 ~~~~~~v~~~--F~~rrk~l~~~l~~~----------~l~~~~i~~~~r~e~l~~~~f~~l~~~~~~ 246 (249)
T 3ftd_A 192 KNYKKFLTKI--FQNRRKVLRKKIPEE----------LLKEAGINPDARVEQLSLEDFFKLYRLIED 246 (249)
T ss_dssp HHHHHHHHHH--HSSTTSCGGGTSCHH----------HHHHTTCCTTCCGGGCCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH--HhCcChhHHHHHHHH----------HHHHCCCCCCCChhhCCHHHHHHHHHHHHH
Confidence 3466677653 334577777777664 689999999999999999999999999875
No 25
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=87.65 E-value=0.56 Score=32.55 Aligned_cols=53 Identities=17% Similarity=0.160 Sum_probs=39.2
Q ss_pred CCCeeeeeehhhccccchhhHHHHHHHhCCCC---CCcCCCCCHHHHHHHHHHHhC
Q 031787 22 DGKQKIMFALTSIKGIGRRLANIVCKKADVDM---NKRAGELSAAELDNLMVVVAN 74 (153)
Q Consensus 22 ~~~k~i~~aLt~I~GIG~~~A~~Ic~~lgi~~---~~kv~~Ls~~ei~~L~~~i~~ 74 (153)
+-|..-.-.|+.++|||+.+|.+|.+.=++.. -.++..+.+..+++|..+++.
T Consensus 19 diNtAs~~eL~~lpGIG~~~A~~IV~~GpF~s~edL~~V~Gig~~~~e~l~~~l~~ 74 (97)
T 3arc_U 19 DLNNTNIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNIPGLTERQKQILRENLEH 74 (97)
T ss_dssp ETTTSCGGGGGGSTTCTTHHHHHHHHHCCCSSGGGGGGCTTCCHHHHHHHHHTGGG
T ss_pred eCCcCCHHHHhHCCCCCHHHHHHHHHcCCCCCHHHHHhccCCCHHHHHHHHHHhce
Confidence 33444456789999999999999998422222 235666899999999998865
No 26
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=87.42 E-value=0.48 Score=29.95 Aligned_cols=50 Identities=10% Similarity=0.161 Sum_probs=34.4
Q ss_pred eeeeehhhccccchhhHHHHHHHhCC-------CC--CCcCCCCCHHHHHHHHHHHhCC
Q 031787 26 KIMFALTSIKGIGRRLANIVCKKADV-------DM--NKRAGELSAAELDNLMVVVANP 75 (153)
Q Consensus 26 ~i~~aLt~I~GIG~~~A~~Ic~~lgi-------~~--~~kv~~Ls~~ei~~L~~~i~~~ 75 (153)
.....|+.|+|||..+|..|++.+|= ++ -..+..+.+.....|..++.++
T Consensus 11 ~~~~~L~~i~giG~~~a~~Ll~~fgs~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~~~ 69 (75)
T 1x2i_A 11 RQRLIVEGLPHVSATLARRLLKHFGSVERVFTASVAELMKVEGIGEKIAKEIRRVITAP 69 (75)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHHHSC
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHcCCHHHHHhCCHHHHhcCCCCCHHHHHHHHHHHhCc
Confidence 34567899999999999999998751 11 1234445666666777776653
No 27
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=87.09 E-value=0.4 Score=37.99 Aligned_cols=58 Identities=17% Similarity=0.109 Sum_probs=45.1
Q ss_pred cchhhhhhhcCccCCCCeeeeeehhhccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHh
Q 031787 8 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVA 73 (153)
Q Consensus 8 ~~~~~~vri~~~~l~~~k~i~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~L~~~i~ 73 (153)
+.|..+|+.+ .-...|.+.-+|..+++ ..+++.+||+|+.++.+||.+|+..|.+.+.
T Consensus 192 ~~~~~~v~~~--F~~rrK~l~n~l~~~~~------~~~l~~~~i~~~~R~e~Ls~~~f~~l~~~~~ 249 (252)
T 1qyr_A 192 RVLSRITTEA--FNQRRKTIRNSLGNLFS------VEVLTGMGIDPAMRAENISVAQYCQMANYLA 249 (252)
T ss_dssp HHHHHHHHHH--HHTTTSBHHHHTTTTCC------HHHHHHTTCCTTSBGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHhCCcHHHHHHhhhhh------HHHHHHcCCCCCCChHHCCHHHHHHHHHHHH
Confidence 3466666553 23567788888876553 5678899999999999999999999998875
No 28
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=86.40 E-value=0.17 Score=40.86 Aligned_cols=59 Identities=12% Similarity=0.169 Sum_probs=46.5
Q ss_pred cchhhhhhhcCccCCCCeeeeeehhhccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 031787 8 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 74 (153)
Q Consensus 8 ~~~~~~vri~~~~l~~~k~i~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~L~~~i~~ 74 (153)
+.|.++|+.+ .-...|.+.-+|..+.+ ..+++.+||+|+.++.+||.+|+..|.+++++
T Consensus 216 ~~~~~~v~~~--F~~rrK~l~n~L~~~~~------~~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~~~ 274 (279)
T 3uzu_A 216 AVLGEVVTAA--FSQRRKMLRNTLGGYRD------LVDFDALGFDLARRAEDIGVDEYVRVAQAVAS 274 (279)
T ss_dssp HHHHHHHHHH--GGGTTSBHHHHTGGGTT------TCCTTTTTCCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HhccChHHHHHHHhhcC------HHHHHHCCcCCCCCceeCCHHHHHHHHHHHHH
Confidence 4577777763 34457888888887654 34578899999999999999999999998864
No 29
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=85.92 E-value=0.49 Score=30.49 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=29.3
Q ss_pred eeeeeehhhccccchhhHHHHHHHhCCCCCC---cCCCCCHHHHHHHHH
Q 031787 25 QKIMFALTSIKGIGRRLANIVCKKADVDMNK---RAGELSAAELDNLMV 70 (153)
Q Consensus 25 k~i~~aLt~I~GIG~~~A~~Ic~~lgi~~~~---kv~~Ls~~ei~~L~~ 70 (153)
..-...|..++|||+.+|.+|.+...+..-. .+..+++..+++|..
T Consensus 23 ~a~~~~L~~ipGIG~~~A~~Il~~r~~~s~~eL~~v~Gig~k~~~~i~~ 71 (75)
T 2duy_A 23 EASLEELMALPGIGPVLARRIVEGRPYARVEDLLKVKGIGPATLERLRP 71 (75)
T ss_dssp TCCHHHHTTSTTCCHHHHHHHHHTCCCSSGGGGGGSTTCCHHHHHHHGG
T ss_pred hCCHHHHHhCCCCCHHHHHHHHHHcccCCHHHHHhCCCCCHHHHHHHHH
Confidence 3344568999999999999999976332211 233345555555543
No 30
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=83.20 E-value=0.35 Score=32.42 Aligned_cols=24 Identities=13% Similarity=0.214 Sum_probs=21.7
Q ss_pred eeeehhhccccchhhHHHHHHHhC
Q 031787 27 IMFALTSIKGIGRRLANIVCKKAD 50 (153)
Q Consensus 27 i~~aLt~I~GIG~~~A~~Ic~~lg 50 (153)
+.++|+.|.|||..+|..|++.+|
T Consensus 30 ~~~~L~~IpgIG~~~A~~Ll~~fg 53 (91)
T 2a1j_B 30 VTECLTTVKSVNKTDSQTLLTTFG 53 (91)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHS
T ss_pred HHHHHHcCCCCCHHHHHHHHHHCC
Confidence 457899999999999999999987
No 31
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=81.67 E-value=1 Score=33.14 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=38.0
Q ss_pred CeeeeeehhhccccchhhHHHHHHHh---CCCCCCcCCCCCHHHHHHHHHHHhC
Q 031787 24 KQKIMFALTSIKGIGRRLANIVCKKA---DVDMNKRAGELSAAELDNLMVVVAN 74 (153)
Q Consensus 24 ~k~i~~aLt~I~GIG~~~A~~Ic~~l---gi~~~~kv~~Ls~~ei~~L~~~i~~ 74 (153)
|..-...|+.++|||+..|.+|.+-- .++.-..+..+++.+.+.|.+..++
T Consensus 58 NtA~~~eL~~LpGiGp~~A~~II~~GpF~svedL~~V~GIg~k~~e~l~~~~~~ 111 (134)
T 1s5l_U 58 NNTNIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNIPGLTERQKQILRENLEH 111 (134)
T ss_dssp TTSCGGGGGGSTTCTHHHHHHHHHTCCCSSGGGGGGCTTCCHHHHHHHHHHHTT
T ss_pred cccCHHHHHHCCCCCHHHHHHHHHcCCCCCHHHHHhCCCCCHHHHHHHHHhhcc
Confidence 33445678999999999999999532 2233346777889999999998876
No 32
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=80.49 E-value=0.37 Score=43.54 Aligned_cols=87 Identities=23% Similarity=0.220 Sum_probs=66.8
Q ss_pred eeehhhccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCCCCccCCccccCccCCcCCCcchhhhhhhHHHH
Q 031787 28 MFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMK 107 (153)
Q Consensus 28 ~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~L~~~i~~~~~~~ip~w~~nr~kd~~tg~~~~li~~dL~~~ 107 (153)
.|+-......|-+.++.+|+..|+.+.....+|+.+++.....++-+ .++ .+|+.|..+|....+|+..|...
T Consensus 260 sFvN~i~T~~GGr~in~~~~~~~l~k~~~~~~lt~dDiregL~avis---vki----~~Pqtk~l~pige~~i~~~l~~~ 332 (621)
T 2q2e_B 260 PFLRYSFCKIGLLTAEEICKAAGLDPEIDPHALGRHEARKLIEAFEK---VKI----MAPPTDCLSPIGEDLIYRGLEKE 332 (621)
T ss_dssp CTTSSSSCC--CHHHHHHHHTTTCCTTSCSSSCCSSSSTTTTHHHHT---SCC----SCCCSTTCCCCCHHHHHHHHHHH
T ss_pred EEeCCcccCCCHHHHHHHHHHhCccccccCCCCCHHHHHhhcEEEEE---EEC----CCCCccccChhHHHHHHHHHHHh
Confidence 33333455667799999999999987646678999999888888765 444 58899999999999999999988
Q ss_pred HHHh----hhhhhccceeec
Q 031787 108 LRDD----LERLKKIRNHRG 123 (153)
Q Consensus 108 ~~~~----I~rl~~i~syRG 123 (153)
++.+ ++| ..+.|+|
T Consensus 333 ~~p~f~~~~~r--~p~~~~g 350 (621)
T 2q2e_B 333 TTVDFIATSTR--KPAVYSG 350 (621)
T ss_dssp SCCSEEECCBC--CCEEETT
T ss_pred cChheEEEEec--CccccCC
Confidence 8774 345 7788877
No 33
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=79.53 E-value=1.3 Score=34.10 Aligned_cols=43 Identities=19% Similarity=0.111 Sum_probs=30.6
Q ss_pred eeeeehhhccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHH
Q 031787 26 KIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVV 72 (153)
Q Consensus 26 ~i~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~L~~~i 72 (153)
...-.|.+++|||+.+|..||..+|.. ..-+- |..+.++..-+
T Consensus 114 ~~~~~L~~lpGIG~kTA~~il~~~~~~-~~~~v---D~~v~Ri~~rl 156 (207)
T 3fhg_A 114 LARERLLNIKGIGMQEASHFLRNVGYF-DLAII---DRHIIDFMRRI 156 (207)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHTTCC-SSCCC---CHHHHHHHHHT
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHhCCC-Cccee---cHHHHHHHHHc
Confidence 345678899999999999999877773 33222 45677766554
No 34
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=77.55 E-value=0.59 Score=37.11 Aligned_cols=57 Identities=11% Similarity=0.188 Sum_probs=43.3
Q ss_pred cchhhhhhhcCccCCCCeeeeeehhhccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHH
Q 031787 8 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVV 72 (153)
Q Consensus 8 ~~~~~~vri~~~~l~~~k~i~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~L~~~i 72 (153)
+.|.++|+.+ .-...|.+.-+|..+++ . ..++.+||+|+.++.+||.+|+..|.+++
T Consensus 198 ~~~~~~v~~~--F~~rrK~l~~~L~~~~~--~----~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~ 254 (255)
T 3tqs_A 198 DQLSHVVKEA--FSYRRKTVGNALKKLIN--P----SQWPLLEINPQLRPQELTVEDFVKISNIL 254 (255)
T ss_dssp HHHHHHHHHH--HHSTTSCHHHHTTTTCC--G----GGTGGGTCCTTSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHccChHHHHHHhhhCC--H----HHHHHCCcCCCCCceeCCHHHHHHHHHHh
Confidence 4567777653 33457778888877643 1 34688999999999999999999998876
No 35
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=77.14 E-value=1.5 Score=36.41 Aligned_cols=36 Identities=28% Similarity=0.387 Sum_probs=29.0
Q ss_pred CccchhhhhhhcCccCCCCeeeeeehhhccccchhhHHHHHHHhC
Q 031787 6 ANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKAD 50 (153)
Q Consensus 6 ~~~~~~~~vri~~~~l~~~k~i~~aLt~I~GIG~~~A~~Ic~~lg 50 (153)
+.++|-.+.=+.|+|-.+ .|+|||+++|.++++..|
T Consensus 218 ~~~q~id~~~L~G~D~~~---------gipGiG~KtA~kll~~~g 253 (341)
T 3q8k_A 218 NQEQFVDLCILLGSDYCE---------SIRGIGPKRAVDLIQKHK 253 (341)
T ss_dssp CHHHHHHHHHHHCCSSSC---------CCTTCCHHHHHHHHHHHC
T ss_pred CHHHHHHHHHhcCCCCCC---------CCCCccHHHHHHHHHHcC
Confidence 456788888899977444 379999999999998866
No 36
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=76.90 E-value=2.9 Score=28.26 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=19.3
Q ss_pred eeehhhccccchhhHHHHHHHh
Q 031787 28 MFALTSIKGIGRRLANIVCKKA 49 (153)
Q Consensus 28 ~~aLt~I~GIG~~~A~~Ic~~l 49 (153)
...|..++|||...|.+|++..
T Consensus 39 ~~~L~~ipGIG~~~A~~Il~~r 60 (98)
T 2edu_A 39 ARDLRSLQRIGPKKAQLIVGWR 60 (98)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHH
Confidence 3458999999999999999876
No 37
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=74.51 E-value=1.7 Score=34.05 Aligned_cols=42 Identities=17% Similarity=0.071 Sum_probs=31.0
Q ss_pred eeeehh-hccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHH
Q 031787 27 IMFALT-SIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVV 72 (153)
Q Consensus 27 i~~aLt-~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~L~~~i 72 (153)
..-.|. +++|||+++|..|+..+|. +...+ =|-.+.++.+-+
T Consensus 122 ~re~Ll~~LpGVG~KTA~~vL~~~g~-~~~~v---VDthv~Ri~~Rl 164 (214)
T 3fhf_A 122 AREFLVRNIKGIGYKEASHFLRNVGY-DDVAI---IDRHILRELYEN 164 (214)
T ss_dssp HHHHHHHHSTTCCHHHHHHHHHHTTC-CSCCC---CCHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCC-CCccc---CcHHHHHHHHHc
Confidence 344577 9999999999999988876 43332 246788877765
No 38
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=74.47 E-value=1.6 Score=34.21 Aligned_cols=64 Identities=20% Similarity=0.072 Sum_probs=39.6
Q ss_pred eeehh-hccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCCCCccCCccccCccCCcCCCcchhhhhhhHH
Q 031787 28 MFALT-SIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALD 105 (153)
Q Consensus 28 ~~aLt-~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~L~~~i~~~~~~~ip~w~~nr~kd~~tg~~~~li~~dL~ 105 (153)
.-.|. +++|||+.+|..||..+|..|...+ |..+.++..-+.- ++. ..-..|.+++.-++..++
T Consensus 128 r~~L~~~l~GVG~kTA~~vL~~~g~~~~~~V----Dthv~Ri~~rlg~-----~~~-----~~k~~t~k~y~~ie~~~~ 192 (219)
T 3n0u_A 128 REFLVRNAKGIGWKEASHFLRNTGVEDLAIL----DKHVLRLMKRHGL-----IQE-----IPKGWSKKRYLYVEEILR 192 (219)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHTTTCCSCCCC----CHHHHHHHHHTTS-----CSS-----CCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHcCCCCeeee----cHHHHHHHHHcCC-----CCc-----CcCcCCHHHHHHHHHHHH
Confidence 44577 9999999999999987887443332 3567776665421 111 012345566666666664
No 39
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=73.99 E-value=1.5 Score=33.83 Aligned_cols=59 Identities=10% Similarity=0.139 Sum_probs=40.9
Q ss_pred hcCccCCCCeeeeeehhhccccchhhHHHHHHHhCCCCC------------CcCCCCCHHHHHHHHHHHhC
Q 031787 16 VLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMN------------KRAGELSAAELDNLMVVVAN 74 (153)
Q Consensus 16 i~~~~l~~~k~i~~aLt~I~GIG~~~A~~Ic~~lgi~~~------------~kv~~Ls~~ei~~L~~~i~~ 74 (153)
|.|-.=...+.++..|.+|.|||+++|.+|++.+|-+.- .++.-+...-.++|...+.+
T Consensus 59 l~gf~~~~ek~~f~~L~~v~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~~lk~ 129 (191)
T 1ixr_A 59 LYGFPDEENLALFELLLSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIALELKG 129 (191)
T ss_dssp EEEESSHHHHHHHHHHHSSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHHHHHHTT
T ss_pred hhccCCHHHHHHHHHHhcCCCcCHHHHHHHHHhCChHHHHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 444433445555567889999999999999999886211 35555677777777777754
No 40
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=73.15 E-value=1.6 Score=34.26 Aligned_cols=59 Identities=15% Similarity=0.260 Sum_probs=42.3
Q ss_pred hcCccCCCCeeeeeehhhccccchhhHHHHHHHhCCCCC------------CcCCCCCHHHHHHHHHHHhC
Q 031787 16 VLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMN------------KRAGELSAAELDNLMVVVAN 74 (153)
Q Consensus 16 i~~~~l~~~k~i~~aLt~I~GIG~~~A~~Ic~~lgi~~~------------~kv~~Ls~~ei~~L~~~i~~ 74 (153)
++|..-...+.++..|.++.|||+++|.+|+..+|.+.- .++.-+.+.-.++|...+.+
T Consensus 75 LyGF~~~~Er~lf~~L~sv~GIGpk~A~~Ils~~~~~~l~~aI~~~d~~~L~~vpGIG~KtA~rIi~elk~ 145 (212)
T 2ztd_A 75 LYGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRD 145 (212)
T ss_dssp EEEESSHHHHHHHHHHHTSTTCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHTT
T ss_pred eEecCcHHHHHHHHHhcCcCCcCHHHHHHHHHhCCHHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 334333445556666889999999999999998886432 36666777777888877765
No 41
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=72.35 E-value=0.89 Score=37.00 Aligned_cols=64 Identities=16% Similarity=0.168 Sum_probs=50.2
Q ss_pred chhhhhhhcCccCCCCeeeeeehhhcc---ccchhhHHHHHHHh-----CCCC--CCcCCCCCHHHHHHHHHHHhC
Q 031787 9 DFQHILRVLNTNVDGKQKIMFALTSIK---GIGRRLANIVCKKA-----DVDM--NKRAGELSAAELDNLMVVVAN 74 (153)
Q Consensus 9 ~~~~~vri~~~~l~~~k~i~~aLt~I~---GIG~~~A~~Ic~~l-----gi~~--~~kv~~Ls~~ei~~L~~~i~~ 74 (153)
.|.++|+.+ .-...|.+..+|.... |+....+..+++.+ |+++ ++++.+||.+|+..|.+++.+
T Consensus 214 ~~~~~v~~~--F~~rrK~l~n~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~R~e~Ls~~~f~~L~~~~~~ 287 (295)
T 3gru_A 214 FFDDFLRAI--FQHRNKSVRKALIDSSKELNYNKDEMKKILEDFLNTNSEIKNLINEKVFKLSVKDIVNLSNEFYR 287 (295)
T ss_dssp HHHHHHHHH--HTTTTSBHHHHHHHTGGGGTCCHHHHHHHHHHHHTTCHHHHHHHTSBGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HccCchHHHHHHhhhhccccCCHHHHHHHHHHhhhcccCCCccccCChhhCCHHHHHHHHHHHHH
Confidence 466777652 3345788999998764 44566788889988 8998 999999999999999998854
No 42
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=71.58 E-value=1.6 Score=34.51 Aligned_cols=39 Identities=15% Similarity=0.146 Sum_probs=30.4
Q ss_pred eeehhhccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHH
Q 031787 28 MFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNL 68 (153)
Q Consensus 28 ~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~L 68 (153)
...|..|.|||+.+|+.|++.+| .-..+.+-+.||+..+
T Consensus 167 ~s~LdgIpGIG~k~ak~Ll~~Fg--Sl~~i~~As~EeL~~V 205 (220)
T 2nrt_A 167 RSVLDNVPGIGPIRKKKLIEHFG--SLENIRSASLEEIARV 205 (220)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHC--SHHHHHTSCHHHHHHH
T ss_pred cccccCCCCcCHHHHHHHHHHcC--CHHHHHhCCHHHHHHH
Confidence 45688999999999999999998 2234556677777665
No 43
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=70.33 E-value=2 Score=33.33 Aligned_cols=58 Identities=14% Similarity=0.217 Sum_probs=38.0
Q ss_pred hcCccCCCCeeeeeehhhccccchhhHHHHHHHhCCCCC------------CcCCCCCHHHHHHHHHHHh
Q 031787 16 VLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMN------------KRAGELSAAELDNLMVVVA 73 (153)
Q Consensus 16 i~~~~l~~~k~i~~aLt~I~GIG~~~A~~Ic~~lgi~~~------------~kv~~Ls~~ei~~L~~~i~ 73 (153)
|.|-.=...+.++..|.+|.|||+++|.+|++.+|-+.- .++.-+...-.++|...+.
T Consensus 60 l~gf~~~~ek~~f~~L~~V~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~elk 129 (203)
T 1cuk_A 60 LYGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMK 129 (203)
T ss_dssp EEEESSHHHHHHHHHHHHSSSCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHhcCCCcCHHHHHHHHhhCChHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHH
Confidence 444433444555557889999999999999999886221 2444455555566666554
No 44
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=68.67 E-value=1 Score=35.99 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=0.0
Q ss_pred ehhhccccchhhHHHHHHHhCCCCCCcCCCCCHHHH
Q 031787 30 ALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEL 65 (153)
Q Consensus 30 aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei 65 (153)
.|..|.|||+++|..|++. |+..-..+..-+.+++
T Consensus 16 ~L~~IpGIGpk~a~~Ll~~-gf~sve~L~~a~~~eL 50 (241)
T 1vq8_Y 16 ELTDISGVGPSKAESLREA-GFESVEDVRGADQSAL 50 (241)
T ss_dssp ------------------------------------
T ss_pred HHhcCCCCCHHHHHHHHHc-CCCCHHHHHhCCHHHH
Confidence 5677788888888887777 6655443433333333
No 45
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=67.43 E-value=5.4 Score=26.19 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=20.8
Q ss_pred HHHhCCCCCCcCCCCCHHHHHHHHHH
Q 031787 46 CKKADVDMNKRAGELSAAELDNLMVV 71 (153)
Q Consensus 46 c~~lgi~~~~kv~~Ls~~ei~~L~~~ 71 (153)
+++|||+. ..+.+|++||+.++...
T Consensus 37 L~kLGI~k-tdP~~LT~eEi~~FaRL 61 (71)
T 2eo2_A 37 LKKLGIHK-TDPSTLTEEEVRKFARL 61 (71)
T ss_dssp HHHHTCCC-CSTTTCCHHHHHHHHHT
T ss_pred HHHcCCCC-CCcccCCHHHHhhceec
Confidence 57899996 67999999999987654
No 46
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=65.39 E-value=1.3 Score=35.17 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=0.0
Q ss_pred eeeeeehhhccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHH
Q 031787 25 QKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNL 68 (153)
Q Consensus 25 k~i~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~L 68 (153)
......|..|.|||+.+|..|++.+|= -..+.+-+.+|+..+
T Consensus 169 ~~~~s~L~~IpGIG~k~ak~Ll~~FGS--l~~i~~As~eeL~~V 210 (226)
T 3c65_A 169 TMFHSVLDDIPGVGEKRKKALLNYFGS--VKKMKEATVEELQRA 210 (226)
T ss_dssp --------------------------------------------
T ss_pred ccccccccccCCCCHHHHHHHHHHhCC--HHHHHhCCHHHHHHc
Confidence 344678999999999999999999872 223444455555544
No 47
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=65.18 E-value=2.8 Score=32.82 Aligned_cols=22 Identities=36% Similarity=0.443 Sum_probs=19.2
Q ss_pred eehhhccccchhhHHHHHHHhC
Q 031787 29 FALTSIKGIGRRLANIVCKKAD 50 (153)
Q Consensus 29 ~aLt~I~GIG~~~A~~Ic~~lg 50 (153)
-.|++++|||+++|.+|+..+.
T Consensus 123 ~~L~~vpGIG~KtA~rIi~elk 144 (212)
T 2ztd_A 123 AALTRVPGIGKRGAERMVLELR 144 (212)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHT
T ss_pred HHHhhCCCCCHHHHHHHHHHHH
Confidence 4689999999999999997763
No 48
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=64.89 E-value=3.3 Score=34.73 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=29.2
Q ss_pred CccchhhhhhhcCccCCCCeeeeeehh-hccccchhhHHHHHHHhC
Q 031787 6 ANEDFQHILRVLNTNVDGKQKIMFALT-SIKGIGRRLANIVCKKAD 50 (153)
Q Consensus 6 ~~~~~~~~vri~~~~l~~~k~i~~aLt-~I~GIG~~~A~~Ic~~lg 50 (153)
+.++|-.+.=++|+| +. . .|+|||+++|.++++..|
T Consensus 236 ~~~q~id~~~L~GsD--------y~-p~GVpGIG~KtA~kLl~~~g 272 (363)
T 3ory_A 236 TLENLIDIGILLGTD--------YN-PDGFEGIGPKKALQLVKAYG 272 (363)
T ss_dssp CHHHHHHHHHHHCBT--------TB-TTCSTTCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhCCC--------CC-CCCCCCcCHHHHHHHHHHcC
Confidence 456788888889977 21 3 688999999999999987
No 49
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=64.62 E-value=4.4 Score=33.64 Aligned_cols=49 Identities=16% Similarity=0.286 Sum_probs=42.1
Q ss_pred CCeeeeeehhhccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 031787 23 GKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 74 (153)
Q Consensus 23 ~~k~i~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~L~~~i~~ 74 (153)
+++.+...|... +..+.+..+++..|++ ..++.+|+++|...|.+.|.+
T Consensus 279 ~~~~~~~~l~~~--lp~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~ 327 (401)
T 2gqf_A 279 PKQMLKTILVRL--LPKKLVELWIEQGIVQ-DEVIANISKVRVKNLVDFIHH 327 (401)
T ss_dssp TTSBHHHHHTTT--SCHHHHHHHHHTTSSC-CCBGGGCCHHHHHHHHHHHHC
T ss_pred ccccHHHHhhhh--cCHHHHHHHHHHcCCC-CCchhhCCHHHHHHHHHHHhc
Confidence 466677777764 7789999999999998 688999999999999999987
No 50
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=64.38 E-value=3 Score=32.30 Aligned_cols=41 Identities=17% Similarity=-0.040 Sum_probs=27.3
Q ss_pred eeeehhhccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHH
Q 031787 27 IMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVV 71 (153)
Q Consensus 27 i~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~L~~~ 71 (153)
..-.|.+++|||+.+|..||....=.|... -|..+.++..-
T Consensus 119 ~~~~L~~lpGIG~kTA~~il~~a~~~~~~~----vD~~v~Ri~~r 159 (218)
T 1pu6_A 119 TREWLLDQKGIGKESADAILCYACAKEVMV----VDKYSYLFLKK 159 (218)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHHTTCCSCCC----CCHHHHHHHHH
T ss_pred HHHHHHcCCCcCHHHHHHHHHHHCCCCccc----cCHHHHHHHHH
Confidence 345689999999999999998754334222 23455555443
No 51
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=64.36 E-value=5.7 Score=33.28 Aligned_cols=49 Identities=27% Similarity=0.393 Sum_probs=40.8
Q ss_pred CCeeeeeehhhccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 031787 23 GKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 74 (153)
Q Consensus 23 ~~k~i~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~L~~~i~~ 74 (153)
+++.+.-.|.. .+..+.+..+|+.+++ +++++.+|+++++.+|.+.|.+
T Consensus 298 ~~~~~~~~l~~--~lp~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~ 346 (417)
T 3v76_A 298 GRQAVQTALAD--ILPRRLAQFFADEAKL-TGRMLADLSDKTIDALASSIQV 346 (417)
T ss_dssp CSSBHHHHHTT--TSCHHHHHHHHHHTTC-TTCBGGGCCHHHHHHHHHHHHS
T ss_pred hhhhHHHHHHH--HhhHHHHHHHHHhcCC-CCCchhhCCHHHHHHHHHHhcC
Confidence 44555555544 3778899999999999 9999999999999999999987
No 52
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=64.08 E-value=3.8 Score=31.63 Aligned_cols=31 Identities=6% Similarity=-0.110 Sum_probs=27.6
Q ss_pred HHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 031787 44 IVCKKADVDMNKRAGELSAAELDNLMVVVAN 74 (153)
Q Consensus 44 ~Ic~~lgi~~~~kv~~Ls~~ei~~L~~~i~~ 74 (153)
++++.+|++|+.++.+||.+|+..|.+.+.+
T Consensus 211 ~~~~~~~~~~~~r~e~l~~~~~~~l~~~~~~ 241 (244)
T 1qam_A 211 QFNNSLKHAGIDDLNNISFEQFLSLFNSYKL 241 (244)
T ss_dssp HHHHHHHHHTCSCTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCceeCCHHHHHHHHHHHHH
Confidence 3578899999999999999999999998854
No 53
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=60.40 E-value=4.6 Score=33.79 Aligned_cols=36 Identities=28% Similarity=0.387 Sum_probs=28.3
Q ss_pred CccchhhhhhhcCccCCCCeeeeeehhhccccchhhHHHHHHHhC
Q 031787 6 ANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKAD 50 (153)
Q Consensus 6 ~~~~~~~~vri~~~~l~~~k~i~~aLt~I~GIG~~~A~~Ic~~lg 50 (153)
+.++|-.+.=++|+|-.+ +|+|||+++|.++++..|
T Consensus 218 ~~~q~id~~~L~G~D~~d---------~IpGIG~KtA~kLl~~~g 253 (379)
T 1ul1_X 218 NQEQFVDLCILLGSDYCE---------SIRGIGPKRAVDLIQKHK 253 (379)
T ss_dssp CHHHHHHHHHHHHCSSSC---------CCTTCCHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHhCCCcCC---------CCCCcCHHHHHHHHHHcC
Confidence 346777888888888554 358999999999998765
No 54
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=60.20 E-value=4.3 Score=33.26 Aligned_cols=36 Identities=22% Similarity=0.261 Sum_probs=27.5
Q ss_pred CccchhhhhhhcCccCCCCeeeeeehhhccccchhhHHHHHHHhC
Q 031787 6 ANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKAD 50 (153)
Q Consensus 6 ~~~~~~~~vri~~~~l~~~k~i~~aLt~I~GIG~~~A~~Ic~~lg 50 (153)
+.++|-.+.=+.|+|- +..++|||+++|.++++..|
T Consensus 221 ~~~q~id~~~L~GsD~---------ipGv~GiG~KtA~kLl~~~g 256 (336)
T 1rxw_A 221 TREQLIDIAILVGTDY---------NEGVKGVGVKKALNYIKTYG 256 (336)
T ss_dssp CHHHHHHHHHHHCBTT---------BCCCTTCCHHHHHHHHHHHS
T ss_pred CHHHHHHHHhhcCCCC---------CCCCCCcCHHHHHHHHHHcC
Confidence 3466777777888552 23689999999999999876
No 55
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=59.91 E-value=4.7 Score=33.28 Aligned_cols=36 Identities=28% Similarity=0.316 Sum_probs=28.5
Q ss_pred CccchhhhhhhcCccCCCCeeeeeehh-hccccchhhHHHHHHHhC
Q 031787 6 ANEDFQHILRVLNTNVDGKQKIMFALT-SIKGIGRRLANIVCKKAD 50 (153)
Q Consensus 6 ~~~~~~~~vri~~~~l~~~k~i~~aLt-~I~GIG~~~A~~Ic~~lg 50 (153)
+.++|-.+.=+.|+|- +. .++|||+++|.++++..|
T Consensus 219 ~~~q~id~~~L~G~D~---------~p~Gv~GIG~KtA~kLi~~~g 255 (346)
T 2izo_A 219 TREQLIDIGILIGTDY---------NPDGIRGIGPERALKIIKKYG 255 (346)
T ss_dssp CHHHHHHHHHHHCCSS---------STTCSTTCCHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHcCCCC---------CCCCCCCcCHHHHHHHHHHcC
Confidence 3467777778888662 33 699999999999999976
No 56
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=59.79 E-value=3.8 Score=36.12 Aligned_cols=29 Identities=14% Similarity=0.398 Sum_probs=23.9
Q ss_pred eeeeeehhhccccchhhHHHHHHHhCCCC
Q 031787 25 QKIMFALTSIKGIGRRLANIVCKKADVDM 53 (153)
Q Consensus 25 k~i~~aLt~I~GIG~~~A~~Ic~~lgi~~ 53 (153)
......|.+++|||+++|.+|+..+|+..
T Consensus 89 ~~~~~~l~~v~GvGpk~A~~~~~~lg~~~ 117 (575)
T 3b0x_A 89 PRGVLEVMEVPGVGPKTARLLYEGLGIDS 117 (575)
T ss_dssp CHHHHHHHTSTTTCHHHHHHHHHTSCCCS
T ss_pred HHHHHHHhcCCCcCHHHHHHHHHhcCCCC
Confidence 34456789999999999999999887653
No 57
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=59.62 E-value=4 Score=31.24 Aligned_cols=25 Identities=36% Similarity=0.484 Sum_probs=20.5
Q ss_pred eeeehhhccccchhhHHHHHHHh-CC
Q 031787 27 IMFALTSIKGIGRRLANIVCKKA-DV 51 (153)
Q Consensus 27 i~~aLt~I~GIG~~~A~~Ic~~l-gi 51 (153)
..-.|.+++|||+.+|..|+... |.
T Consensus 107 ~~~~L~~l~GIG~~tA~~il~~~~~~ 132 (211)
T 2abk_A 107 DRAALEALPGVGRKTANVVLNTAFGW 132 (211)
T ss_dssp CHHHHHHSTTCCHHHHHHHHHHHHCC
T ss_pred HHHHHHhCCCCChHHHHHHHHHHCCC
Confidence 34568999999999999999774 53
No 58
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=59.23 E-value=5.9 Score=31.18 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=30.1
Q ss_pred eeehhhccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 031787 28 MFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 74 (153)
Q Consensus 28 ~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~L~~~i~~ 74 (153)
..+|.+++|||+++|.++.-.+= .-.++++..|.++|.+
T Consensus 25 I~~l~~LPGIG~KsA~RlA~hLL--------~~~~~~~~~La~al~~ 63 (212)
T 3vdp_A 25 IEELSKLPGIGPKTAQRLAFFII--------NMPLDEVRSLSQAIIE 63 (212)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHT--------TSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHH--------cCCHHHHHHHHHHHHH
Confidence 36789999999999999986542 2356788888877765
No 59
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=58.78 E-value=4.3 Score=31.44 Aligned_cols=41 Identities=10% Similarity=0.180 Sum_probs=28.3
Q ss_pred eeeehhhccccchhhHHHHHHHh-CCCCCCcCCCCCHHHHHHHHHHH
Q 031787 27 IMFALTSIKGIGRRLANIVCKKA-DVDMNKRAGELSAAELDNLMVVV 72 (153)
Q Consensus 27 i~~aLt~I~GIG~~~A~~Ic~~l-gi~~~~kv~~Ls~~ei~~L~~~i 72 (153)
..-.|.+++|||+.+|..|+... |. |.. + -|-.+.++..-+
T Consensus 107 ~~~~L~~lpGIG~~TA~~il~~a~~~-~~~-~---vD~~v~Rv~~rl 148 (225)
T 1kg2_A 107 TFEEVAALPGVGRSTAGAILSLSLGK-HFP-I---LDGNVKRVLARC 148 (225)
T ss_dssp SHHHHHTSTTCCHHHHHHHHHHHHCC-SCC-C---CCHHHHHHHHHH
T ss_pred HHHHHhcCCCCcHHHHHHHHHHhCCC-Ccc-e---eCHHHHHHHHHH
Confidence 34678999999999999999764 43 322 2 445666665544
No 60
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=58.76 E-value=4.8 Score=33.54 Aligned_cols=37 Identities=27% Similarity=0.383 Sum_probs=29.8
Q ss_pred CCccchhhhhhhcCccCCCCeeeeeehhhccccchhhHHHHHHHhC
Q 031787 5 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKAD 50 (153)
Q Consensus 5 ~~~~~~~~~vri~~~~l~~~k~i~~aLt~I~GIG~~~A~~Ic~~lg 50 (153)
++.++|-.+.=+.|+|- +..|+|||.++|.++++..+
T Consensus 210 l~~~q~id~~~L~G~D~---------~pgv~GiG~ktA~kli~~~~ 246 (352)
T 3qe9_Y 210 FTEEKFRYMCILSGCDY---------LSSLRGIGLAKACKVLRLAN 246 (352)
T ss_dssp CCHHHHHHHHHHHCCSS---------SCCCTTCCHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHhcCCCC---------CCCCCCeeHHHHHHHHHHhC
Confidence 45677888888888662 45799999999999999985
No 61
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=58.25 E-value=7.2 Score=30.41 Aligned_cols=33 Identities=27% Similarity=0.248 Sum_probs=24.0
Q ss_pred eeeeehhhccccchhhHHHHHHH-hCCCCCCcCC
Q 031787 26 KIMFALTSIKGIGRRLANIVCKK-ADVDMNKRAG 58 (153)
Q Consensus 26 ~i~~aLt~I~GIG~~~A~~Ic~~-lgi~~~~kv~ 58 (153)
...-.|.+++|||+.+|..|+-. +|...-..+.
T Consensus 135 ~~~~~L~~lpGIG~kTA~~ill~alg~pd~~pvd 168 (233)
T 2h56_A 135 TVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLSVG 168 (233)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHHTTCCSCCCCTT
T ss_pred HHHHHHHhCCCcCHHHHHHHHHHhCCCCCeeeCc
Confidence 34566889999999999999987 4543234443
No 62
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=58.09 E-value=4.4 Score=30.20 Aligned_cols=36 Identities=11% Similarity=0.057 Sum_probs=25.7
Q ss_pred hhhhhhhcCccCCCCeeeeeehhhccccchhhHHHHHHH
Q 031787 10 FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKK 48 (153)
Q Consensus 10 ~~~~vri~~~~l~~~k~i~~aLt~I~GIG~~~A~~Ic~~ 48 (153)
.+.|+.+++-.+|.+. -.|.+++|||+++|.+++-.
T Consensus 88 Ak~i~~~a~~~vp~~~---~~L~~LpGVG~yTAdav~~F 123 (161)
T 4e9f_A 88 AKTIVKFSDEYLTKQW---KYPIELHGIGKYGNDSYRIF 123 (161)
T ss_dssp HHHHHHHHHHHHHSCC---SSGGGSTTCCHHHHHHHHHH
T ss_pred HHHHHHHhCCcCCCCh---hhhhcCCCchHHHHHHHHHH
Confidence 3455555555566543 46889999999999998754
No 63
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=57.94 E-value=6.8 Score=30.24 Aligned_cols=41 Identities=15% Similarity=0.061 Sum_probs=27.7
Q ss_pred eeehhhccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHH
Q 031787 28 MFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVV 72 (153)
Q Consensus 28 ~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~L~~~i 72 (153)
.-.|.+++|||+.+|..|+....=.|.- + -|..+.++..-+
T Consensus 114 ~~~L~~lpGIG~~TA~~il~~~~~~~~~-~---vD~~v~Rv~~rl 154 (221)
T 1kea_A 114 RKAILDLPGVGKYTCAAVMCLAFGKKAA-M---VDANFVRVINRY 154 (221)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCCCCC-C---CCHHHHHHHHHH
T ss_pred HHHHHhCCCCcHHHHHHHHHHhcCCCcc-e---ecHHHHHHHHHH
Confidence 4578999999999999999875433422 2 234566655544
No 64
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=57.69 E-value=4.7 Score=30.93 Aligned_cols=22 Identities=41% Similarity=0.549 Sum_probs=19.4
Q ss_pred eehhhccccchhhHHHHHHHhC
Q 031787 29 FALTSIKGIGRRLANIVCKKAD 50 (153)
Q Consensus 29 ~aLt~I~GIG~~~A~~Ic~~lg 50 (153)
-.|++++|||+++|.+|+..+.
T Consensus 107 ~~L~~vpGIG~K~A~rI~~~lk 128 (191)
T 1ixr_A 107 RLLTSASGVGRRLAERIALELK 128 (191)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHT
T ss_pred HHHHhCCCCCHHHHHHHHHHHH
Confidence 3689999999999999998774
No 65
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=57.67 E-value=4.6 Score=31.22 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=18.4
Q ss_pred eehhhccccchhhHHHHHHHh
Q 031787 29 FALTSIKGIGRRLANIVCKKA 49 (153)
Q Consensus 29 ~aLt~I~GIG~~~A~~Ic~~l 49 (153)
-.|++++|||+++|.+|+..+
T Consensus 108 ~~L~~vpGIG~K~A~rI~~el 128 (203)
T 1cuk_A 108 GALVKLPGIGKKTAERLIVEM 128 (203)
T ss_dssp HHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHhhCCCCCHHHHHHHHHHH
Confidence 368999999999999998655
No 66
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=57.51 E-value=4.5 Score=33.44 Aligned_cols=41 Identities=20% Similarity=0.231 Sum_probs=28.5
Q ss_pred eeehhhccccchhhHHHHHHHhCCCCCCc----CCCCCHHHHHHHH
Q 031787 28 MFALTSIKGIGRRLANIVCKKADVDMNKR----AGELSAAELDNLM 69 (153)
Q Consensus 28 ~~aLt~I~GIG~~~A~~Ic~~lgi~~~~k----v~~Ls~~ei~~L~ 69 (153)
...|++|+|||+++|..+.+. ||..-.- -+.|+..+..-|.
T Consensus 97 l~~l~~V~GiGpk~a~~l~~~-Gi~tledL~~a~~~l~~~~~~gl~ 141 (335)
T 2fmp_A 97 INFLTRVSGIGPSAARKFVDE-GIKTLEDLRKNEDKLNHHQRIGLK 141 (335)
T ss_dssp HHHHTTSTTCCHHHHHHHHHT-TCCSHHHHHTCGGGSCHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHc-CCCCHHHHHHhhhhhHHHHHHHHH
Confidence 456899999999999999888 9875322 2445554444333
No 67
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=57.39 E-value=13 Score=29.62 Aligned_cols=27 Identities=30% Similarity=0.304 Sum_probs=21.5
Q ss_pred eeeehhhccccchhhHHHHHHHhCCCC
Q 031787 27 IMFALTSIKGIGRRLANIVCKKADVDM 53 (153)
Q Consensus 27 i~~aLt~I~GIG~~~A~~Ic~~lgi~~ 53 (153)
..-.|..++|||+.+|..||-..-=.|
T Consensus 205 ~~~~L~~lpGIG~~TA~~ill~~lg~~ 231 (282)
T 1mpg_A 205 AMKTLQTFPGIGRWTANYFALRGWQAK 231 (282)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHSCCS
T ss_pred HHHHHhcCCCcCHHHHHHHHHHhCCCC
Confidence 356799999999999999998643334
No 68
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=57.33 E-value=3.9 Score=34.52 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=21.9
Q ss_pred eeehhhccccchhhHHHHHHHhCCCCC
Q 031787 28 MFALTSIKGIGRRLANIVCKKADVDMN 54 (153)
Q Consensus 28 ~~aLt~I~GIG~~~A~~Ic~~lgi~~~ 54 (153)
...|.+|+|||+++|..+.+. ||..-
T Consensus 120 l~~l~~I~GvGpk~a~~ly~~-Gi~tl 145 (381)
T 1jms_A 120 FKLFTSVFGVGLKTAEKWFRM-GFRTL 145 (381)
T ss_dssp HHHHHTSTTCCHHHHHHHHHT-TCCSH
T ss_pred HHHHHccCCCCHHHHHHHHHc-CCCcH
Confidence 356789999999999999887 98753
No 69
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=57.29 E-value=3.9 Score=31.26 Aligned_cols=23 Identities=35% Similarity=0.626 Sum_probs=20.9
Q ss_pred eeehhhccccchhhHHHHHHHhC
Q 031787 28 MFALTSIKGIGRRLANIVCKKAD 50 (153)
Q Consensus 28 ~~aLt~I~GIG~~~A~~Ic~~lg 50 (153)
.+.|+.|+|||...|..|++.+|
T Consensus 161 ~~~L~~i~gVg~~~a~~Ll~~fg 183 (219)
T 2bgw_A 161 LYILQSFPGIGRRTAERILERFG 183 (219)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHS
T ss_pred HHHHhcCCCCCHHHHHHHHHHcC
Confidence 45688999999999999999988
No 70
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=57.18 E-value=4.7 Score=31.33 Aligned_cols=25 Identities=32% Similarity=0.406 Sum_probs=21.0
Q ss_pred eeeehhhccccchhhHHHHHHH-hCC
Q 031787 27 IMFALTSIKGIGRRLANIVCKK-ADV 51 (153)
Q Consensus 27 i~~aLt~I~GIG~~~A~~Ic~~-lgi 51 (153)
..-.|.+++|||+.+|..|+.. +|.
T Consensus 111 ~~~~L~~lpGIG~~TA~~il~~a~g~ 136 (226)
T 1orn_A 111 DRDELMKLPGVGRKTANVVVSVAFGV 136 (226)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHHHHCC
T ss_pred HHHHHHHCCCccHHHHHHHHHHHCCC
Confidence 4567899999999999999976 564
No 71
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=56.23 E-value=3.2 Score=34.42 Aligned_cols=29 Identities=14% Similarity=0.247 Sum_probs=22.7
Q ss_pred CeeeeeehhhccccchhhHHHHHHHhCCCC
Q 031787 24 KQKIMFALTSIKGIGRRLANIVCKKADVDM 53 (153)
Q Consensus 24 ~k~i~~aLt~I~GIG~~~A~~Ic~~lgi~~ 53 (153)
.-++.-.|++|+|||+++|..+.+. ||..
T Consensus 91 ~~p~l~ll~~v~GiG~k~a~~l~~~-Gi~t 119 (335)
T 2bcq_A 91 SVPVLELFSNIWGAGTKTAQMWYQQ-GFRS 119 (335)
T ss_dssp THHHHHHHHTSTTCCHHHHHHHHHT-TCCS
T ss_pred hhHHHHHHhcCCCcCHHHHHHHHHc-CCCC
Confidence 3344455689999999999999877 8865
No 72
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=55.76 E-value=6.4 Score=32.10 Aligned_cols=34 Identities=15% Similarity=0.403 Sum_probs=24.0
Q ss_pred cchhhhhhhcC--ccCCCCeeeeeehhhccccchhhHHHHHHHhC
Q 031787 8 EDFQHILRVLN--TNVDGKQKIMFALTSIKGIGRRLANIVCKKAD 50 (153)
Q Consensus 8 ~~~~~~vri~~--~~l~~~k~i~~aLt~I~GIG~~~A~~Ic~~lg 50 (153)
++|-.+.=+.| +| .+..++|||+++|.++++..|
T Consensus 189 ~q~iD~~~L~GD~sD---------niPGVpGIG~KTA~kLL~~~g 224 (290)
T 1exn_A 189 EQFISLKAIMGDLGD---------NIRGVEGIGAKRGYNIIREFG 224 (290)
T ss_dssp HHHHHHHHHHCBGGG---------TBCCCTTCCHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCcC---------CCCCCCcCCHhHHHHHHHHcC
Confidence 45555555566 33 133589999999999998876
No 73
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=55.62 E-value=7.9 Score=31.19 Aligned_cols=32 Identities=34% Similarity=0.281 Sum_probs=24.1
Q ss_pred eeeehhhccccchhhHHHHHHH-hCCCCCCcCCC
Q 031787 27 IMFALTSIKGIGRRLANIVCKK-ADVDMNKRAGE 59 (153)
Q Consensus 27 i~~aLt~I~GIG~~~A~~Ic~~-lgi~~~~kv~~ 59 (153)
+.-.|.+++|||+.+|..||-. +| ..--.+.+
T Consensus 208 ~~~~L~~lpGIG~~TA~~ill~~lg-~d~fpvdD 240 (295)
T 2jhn_A 208 AYEYLTSFKGIGRWTAELVLSIALG-KNVFPADD 240 (295)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHTTC-CCCCCTTC
T ss_pred HHHHHhcCCCcCHHHHHHHHHHccC-CCcccchH
Confidence 4567899999999999999987 56 32335554
No 74
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=54.52 E-value=5.4 Score=33.36 Aligned_cols=40 Identities=20% Similarity=0.273 Sum_probs=28.5
Q ss_pred eeehhhccccchhhHHHHHHHhCCCCC----CcCCCCCHHHHHHH
Q 031787 28 MFALTSIKGIGRRLANIVCKKADVDMN----KRAGELSAAELDNL 68 (153)
Q Consensus 28 ~~aLt~I~GIG~~~A~~Ic~~lgi~~~----~kv~~Ls~~ei~~L 68 (153)
...|.+|+|||+++|..+.+. ||..- .+-+.|++.+..-|
T Consensus 101 l~~l~~I~GvG~kta~~l~~~-Gi~tledL~~~~~~L~~~~~~Gl 144 (360)
T 2ihm_A 101 MKLFTQVFGVGVKTANRWYQE-GLRTLDELREQPQRLTQQQKAGL 144 (360)
T ss_dssp HHHHHTSTTCCHHHHHHHHHT-TCCSHHHHHTCCTTCCHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHc-CCCCHHHHHhcccchHHHHHHHH
Confidence 356789999999999999887 88753 23356666544433
No 75
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=54.21 E-value=6.1 Score=25.29 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=17.5
Q ss_pred ehhhccccchhhHHHHHHHh
Q 031787 30 ALTSIKGIGRRLANIVCKKA 49 (153)
Q Consensus 30 aLt~I~GIG~~~A~~Ic~~l 49 (153)
.|..+.|||..+|..|++.+
T Consensus 57 eL~~i~GIG~~~a~~I~~~~ 76 (78)
T 1kft_A 57 EIAKVPGISQGLAEKIFWSL 76 (78)
T ss_dssp HHTTSSSTTSHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHH
Confidence 47889999999999998765
No 76
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=53.92 E-value=6.7 Score=31.96 Aligned_cols=36 Identities=22% Similarity=0.344 Sum_probs=27.5
Q ss_pred CccchhhhhhhcCccCCCCeeeeeehhhccccchhhHHHHHHHhC
Q 031787 6 ANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKAD 50 (153)
Q Consensus 6 ~~~~~~~~vri~~~~l~~~k~i~~aLt~I~GIG~~~A~~Ic~~lg 50 (153)
+.++|-.+.=++|+|--+ ..++|||+++|.++++. |
T Consensus 210 ~~~q~id~~~L~GsD~~p--------~GvpGiG~ktA~kli~~-g 245 (326)
T 1a76_A 210 SLDDLIDIAIFMGTDYNP--------GGVKGIGFKRAYELVRS-G 245 (326)
T ss_dssp CHHHHHHHHHHHCCTTST--------TTTTTCCHHHHHHHHHH-T
T ss_pred CHHHHHHHHHHcCCCCCC--------CCCCCcCHHHHHHHHHc-C
Confidence 346777777888866222 27999999999999998 5
No 77
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=53.76 E-value=5.1 Score=31.45 Aligned_cols=43 Identities=21% Similarity=0.210 Sum_probs=29.3
Q ss_pred eeeehhhccccchhhHHHHHHHhCCCCC-CcCCCCCHHHHHHHHHHH
Q 031787 27 IMFALTSIKGIGRRLANIVCKKADVDMN-KRAGELSAAELDNLMVVV 72 (153)
Q Consensus 27 i~~aLt~I~GIG~~~A~~Ic~~lgi~~~-~kv~~Ls~~ei~~L~~~i 72 (153)
+.-.|+.++|||+.+|..||-..-=.|+ -.++| --+.++...+
T Consensus 148 ~~~~L~~l~GIG~~TA~~ill~alg~pd~fpv~D---~~v~r~~~rl 191 (232)
T 4b21_A 148 LMESLSKIKGVKRWTIEMYSIFTLGRLDIMPADD---STLKNEAKEF 191 (232)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHTSCCSSCCCTTC---HHHHHHHHHH
T ss_pred HHHHHHhCCCcCHHHHHHHHHHhCCCCCeeeCcc---HHHHHHHHHH
Confidence 5567999999999999999987533343 34544 3455544443
No 78
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=53.58 E-value=5.1 Score=31.16 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=23.6
Q ss_pred eeeehhhccccchhhHHHHHHHhCCCCC-CcCCC
Q 031787 27 IMFALTSIKGIGRRLANIVCKKADVDMN-KRAGE 59 (153)
Q Consensus 27 i~~aLt~I~GIG~~~A~~Ic~~lgi~~~-~kv~~ 59 (153)
+.-.|..++|||+.+|..||-..-=.|+ -.++|
T Consensus 144 ~~~~L~~l~GIG~~TA~~ill~~lg~~d~fpv~D 177 (225)
T 2yg9_A 144 VIAELVQLPGIGRWTAEMFLLFALARPDVFSSGD 177 (225)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHTSCCSCCCCTTC
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhCCCCCeeeCcc
Confidence 4566899999999999999987432333 34444
No 79
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=53.12 E-value=5.3 Score=31.19 Aligned_cols=32 Identities=28% Similarity=0.272 Sum_probs=23.3
Q ss_pred eeehhhccccchhhHHHHHHHhCCCCC-CcCCC
Q 031787 28 MFALTSIKGIGRRLANIVCKKADVDMN-KRAGE 59 (153)
Q Consensus 28 ~~aLt~I~GIG~~~A~~Ic~~lgi~~~-~kv~~ 59 (153)
.-.|..++|||+.+|..||-..-=.|+ -.+.+
T Consensus 138 ~~~L~~l~GIG~~TA~~ill~~lg~pd~fpvdD 170 (228)
T 3s6i_A 138 IERLTQIKGIGRWTVEMLLIFSLNRDDVMPADD 170 (228)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHTSCCSSCCCTTC
T ss_pred HHHHHhCCCcCHHHHHHHHHHhCCCCCEEeccc
Confidence 567899999999999999976432333 44444
No 80
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=52.90 E-value=8.4 Score=30.63 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=31.2
Q ss_pred eeeeehhhccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 031787 26 KIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 74 (153)
Q Consensus 26 ~i~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~L~~~i~~ 74 (153)
.+..+|.+++|||+++|.++.-.+= ...++++..|.++|.+
T Consensus 9 ~LI~~l~~LPGIG~KSA~RlA~hLL--------~~~~~~~~~La~al~~ 49 (228)
T 1vdd_A 9 SLIRELSRLPGIGPKSAQRLAFHLF--------EQPREDIERLASALLE 49 (228)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHHHS--------SSCHHHHHHHHHHHHH
T ss_pred HHHHHHhHCCCCCHHHHHHHHHHHH--------cCCHHHHHHHHHHHHH
Confidence 3456889999999999999986542 2457788888877754
No 81
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=51.35 E-value=6 Score=32.43 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=28.5
Q ss_pred CccchhhhhhhcCccCCCCeeeeeehhhccccchhhHHHHHHHhC
Q 031787 6 ANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKAD 50 (153)
Q Consensus 6 ~~~~~~~~vri~~~~l~~~k~i~~aLt~I~GIG~~~A~~Ic~~lg 50 (153)
+.++|-.+.=++|+|--+ ..++|||+++|.++++..|
T Consensus 222 ~~~q~id~~~L~G~Dy~p--------~gv~GiG~ktA~kli~~~g 258 (340)
T 1b43_A 222 TREKLIELAILVGTDYNP--------GGIKGIGLKKALEIVRHSK 258 (340)
T ss_dssp CHHHHHHHHHHHCCTTST--------TCSTTCCHHHHHHHHHTCS
T ss_pred CHHHHHHHHHhcCCCCCC--------CCCCCccHHHHHHHHHHcC
Confidence 346777777888876322 1799999999999999875
No 82
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=50.44 E-value=7.4 Score=25.67 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=18.2
Q ss_pred ehhhccccchhhHHHHHHHhC
Q 031787 30 ALTSIKGIGRRLANIVCKKAD 50 (153)
Q Consensus 30 aLt~I~GIG~~~A~~Ic~~lg 50 (153)
.|..+.|||..+|..|++.+.
T Consensus 65 eL~~i~GIG~~~a~~I~~~l~ 85 (91)
T 2a1j_B 65 DLALCPGLGPQKARRLFDVLH 85 (91)
T ss_dssp HHHTSSSCCSHHHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHh
Confidence 478899999999999998774
No 83
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=50.14 E-value=6.2 Score=31.88 Aligned_cols=42 Identities=12% Similarity=0.090 Sum_probs=29.6
Q ss_pred eeeehhhccccchhhHHHHHHH-hCCCCCCcCCCCCHHHHHHHHHHH
Q 031787 27 IMFALTSIKGIGRRLANIVCKK-ADVDMNKRAGELSAAELDNLMVVV 72 (153)
Q Consensus 27 i~~aLt~I~GIG~~~A~~Ic~~-lgi~~~~kv~~Ls~~ei~~L~~~i 72 (153)
..-.|..++|||+.+|..||-. +|-...-.+ |-.+.++...+
T Consensus 209 ~~~~L~~lpGIG~~TA~~ill~~lg~pd~fpv----D~~v~r~~~rl 251 (290)
T 3i0w_A 209 CHEELKKFMGVGPQVADCIMLFSMQKYSAFPV----DTWVKKAMMSL 251 (290)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHHCCTTCCCC----CHHHHHHHHHH
T ss_pred HHHHHHhCCCcCHHHHHHHHHHhCCCCCccee----cHHHHHHHHHh
Confidence 4567899999999999999977 565433333 45666655544
No 84
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=50.13 E-value=8 Score=25.30 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=18.8
Q ss_pred ehhhccccchhhHHHHHHHhC
Q 031787 30 ALTSIKGIGRRLANIVCKKAD 50 (153)
Q Consensus 30 aLt~I~GIG~~~A~~Ic~~lg 50 (153)
.|..+.|||..+|.+|...+.
T Consensus 52 eL~~i~GIG~~~a~~I~~~l~ 72 (89)
T 1z00_A 52 DLALCPGLGPQKARRLFDVLH 72 (89)
T ss_dssp HHHTSTTCCHHHHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHH
Confidence 478899999999999998875
No 85
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=49.59 E-value=7 Score=22.39 Aligned_cols=41 Identities=15% Similarity=0.083 Sum_probs=32.0
Q ss_pred hhhccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHH
Q 031787 31 LTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVV 72 (153)
Q Consensus 31 Lt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~L~~~i 72 (153)
|.+-.|++.....+.+..+|+ .......+++++...|.+.+
T Consensus 8 lAkel~~~~k~l~~~l~~~g~-~k~~~s~l~~~~~~~l~~~~ 48 (49)
T 1nd9_A 8 LAAERQTSVERLVQQFADAGI-RKSADDSVSAQEKQTLIDHL 48 (49)
T ss_dssp HHHHHSSSHHHHHHHHHHHTS-CCSSSSCEETTGGGHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHcCC-CCCCCCcCCHHHHHHHHHHh
Confidence 445568999999999999999 55556778888888877654
No 86
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=49.21 E-value=13 Score=31.51 Aligned_cols=38 Identities=13% Similarity=0.336 Sum_probs=30.0
Q ss_pred ehhhccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHH
Q 031787 30 ALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDN 67 (153)
Q Consensus 30 aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~ 67 (153)
-+..+.|||.+++..+++.+||..-.-+..++.+++.+
T Consensus 254 pv~~l~GiG~~~~~~lL~~lGI~TigdLa~~~~~~L~~ 291 (435)
T 4ecq_A 254 PIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQS 291 (435)
T ss_dssp BGGGSTTCSSHHHHHHHHHHTCCBGGGGGGSCHHHHHH
T ss_pred CHHHhcCCCHHHHHHHHHHcCCCcHHHHhhCCHHHHHH
Confidence 46789999999999999999998755555667666643
No 87
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.31 E-value=7.2 Score=28.12 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHHHHhCCCCccCCccccCccCCcCCCc
Q 031787 58 GELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGK 95 (153)
Q Consensus 58 ~~Ls~~ei~~L~~~i~~~~~~~ip~w~~nr~kd~~tg~ 95 (153)
.+|++||+..|..+|.+ ..+..-..|.++|+.+|-
T Consensus 10 ~~l~~ee~~el~~WL~~---l~Ls~~~rn~rRDFSdG~ 44 (127)
T 2ee7_A 10 SSVDEEALHQLYLWVDN---IPLSRPKRNLSRDFSDGV 44 (127)
T ss_dssp SSCCHHHHHHHHHHHHH---SCCSCCSSCHHHHHTTSH
T ss_pred CCCCHHHHHHHHHHHHc---CCCCCCCCchhhhccchh
Confidence 57999999999999985 444333456778888864
No 88
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=48.23 E-value=19 Score=28.32 Aligned_cols=33 Identities=12% Similarity=0.155 Sum_probs=28.9
Q ss_pred hHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 031787 41 LANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 74 (153)
Q Consensus 41 ~A~~Ic~~lgi~~~~kv~~Ls~~ei~~L~~~i~~ 74 (153)
.+..+++.+||+ ++++.+||.+|+..|.+++.+
T Consensus 247 ~~~~~l~~~~~~-~~R~e~l~~~~f~~l~~~~~~ 279 (285)
T 1zq9_A 247 KIQQILTSTGFS-DKRARSMDIDDFIRLLHGFNA 279 (285)
T ss_dssp HHHHHHHHHTCT-TCBGGGCCHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCC-CCChhhCCHHHHHHHHHHHHH
Confidence 346778999998 789999999999999999865
No 89
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=46.85 E-value=8.1 Score=34.06 Aligned_cols=26 Identities=15% Similarity=0.359 Sum_probs=21.2
Q ss_pred eeeeehhhccccchhhHHHHHHHhCCC
Q 031787 26 KIMFALTSIKGIGRRLANIVCKKADVD 52 (153)
Q Consensus 26 ~i~~aLt~I~GIG~~~A~~Ic~~lgi~ 52 (153)
.....|.+++|||+++|.+|.+. ||.
T Consensus 94 ~~~~~L~~v~GVGpk~A~~i~~~-G~~ 119 (578)
T 2w9m_A 94 PGLLDLLGVRGLGPKKIRSLWLA-GID 119 (578)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHT-TCC
T ss_pred HHHHHHhCCCCcCHHHHHHHHHc-CCC
Confidence 34566899999999999999986 553
No 90
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=45.89 E-value=8.8 Score=31.70 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=20.0
Q ss_pred eeeehhhccccchhhHHHHHHHh
Q 031787 27 IMFALTSIKGIGRRLANIVCKKA 49 (153)
Q Consensus 27 i~~aLt~I~GIG~~~A~~Ic~~l 49 (153)
..-.|.+++|||+.+|..|+...
T Consensus 116 ~~~~L~~l~GIG~~tA~~il~~~ 138 (369)
T 3fsp_A 116 DPDEFSRLKGVGPYTVGAVLSLA 138 (369)
T ss_dssp SHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHhcCCCcCHHHHHHHHHHH
Confidence 45678999999999999999875
No 91
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=45.03 E-value=9.3 Score=31.92 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=27.7
Q ss_pred eeeeehhhccccchhhHHHHHHH-hCCCCCCcCCCCCHHHHHHHHHH
Q 031787 26 KIMFALTSIKGIGRRLANIVCKK-ADVDMNKRAGELSAAELDNLMVV 71 (153)
Q Consensus 26 ~i~~aLt~I~GIG~~~A~~Ic~~-lgi~~~~kv~~Ls~~ei~~L~~~ 71 (153)
...-.|..++|||+.+|..||-. +|- |+.-+- |-.+.++..-
T Consensus 250 ~~~~~L~~LpGIGp~TA~~ill~alg~-pd~fpv---DthV~Ri~~r 292 (360)
T 2xhi_A 250 EAHKALCILPGVGTCVADKICLMALDK-PQAVPV---NVHMWHIAQR 292 (360)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHSCC-TTCCCC---SHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHhCCC-CCEEEe---cHHHHHHHHH
Confidence 45567899999999999999977 453 322221 3455555443
No 92
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=44.96 E-value=11 Score=29.57 Aligned_cols=20 Identities=15% Similarity=0.459 Sum_probs=17.6
Q ss_pred eehhhccccchhhHHHHHHH
Q 031787 29 FALTSIKGIGRRLANIVCKK 48 (153)
Q Consensus 29 ~aLt~I~GIG~~~A~~Ic~~ 48 (153)
-.|..++|||+.+|.+|.+.
T Consensus 132 ~eL~~LpGIG~k~A~~IIey 151 (205)
T 2i5h_A 132 HQLELLPGVGKKMMWAIIEE 151 (205)
T ss_dssp BGGGGSTTCCHHHHHHHHHH
T ss_pred HHHhcCCCcCHHHHHHHHHH
Confidence 45788999999999999965
No 93
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=41.38 E-value=13 Score=24.88 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=16.3
Q ss_pred hhhccccchhhHHHHHHHh
Q 031787 31 LTSIKGIGRRLANIVCKKA 49 (153)
Q Consensus 31 Lt~I~GIG~~~A~~Ic~~l 49 (153)
+..+.|||.++|..|-+.|
T Consensus 60 ~~~L~giG~ki~~~L~e~L 78 (87)
T 2kp7_A 60 AKILQHFGDRLCRMLDEKL 78 (87)
T ss_dssp HHTCTTTCHHHHHHHHHHH
T ss_pred HHHhhcccHHHHHHHHHHH
Confidence 5789999999999988765
No 94
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=39.76 E-value=10 Score=23.85 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031787 58 GELSAAELDNLMVVVAN 74 (153)
Q Consensus 58 ~~Ls~~ei~~L~~~i~~ 74 (153)
+.||++|+..|..+|..
T Consensus 65 ~~ls~~ei~~l~~yl~~ 81 (90)
T 1cyi_A 65 DRLSEEEIQAVAEYVFK 81 (90)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHh
Confidence 46999999999999975
No 95
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=39.43 E-value=35 Score=25.10 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=17.8
Q ss_pred CCcCCCCCHHHHHHHHHHHhC
Q 031787 54 NKRAGELSAAELDNLMVVVAN 74 (153)
Q Consensus 54 ~~kv~~Ls~~ei~~L~~~i~~ 74 (153)
...++.|||+|-+.|.+.|..
T Consensus 11 ~~dLs~LteeEr~~Il~VL~R 31 (153)
T 2zet_C 11 RLDLSTLTDEEAEHVWAVVQR 31 (153)
T ss_dssp CCCCTTSCHHHHHHHHHHHHH
T ss_pred CCCcccCCHHHHHHHHHHHHh
Confidence 345789999999999999965
No 96
>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A*
Probab=39.13 E-value=21 Score=22.23 Aligned_cols=17 Identities=0% Similarity=0.143 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031787 58 GELSAAELDNLMVVVAN 74 (153)
Q Consensus 58 ~~Ls~~ei~~L~~~i~~ 74 (153)
..|||+|+..|..+|.+
T Consensus 63 ~~Lsd~ei~~l~~Yi~~ 79 (81)
T 1kx2_A 63 TDCTDEDYKAAIEFMSK 79 (81)
T ss_dssp SSCCHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 47999999999999965
No 97
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1
Probab=38.83 E-value=19 Score=22.26 Aligned_cols=17 Identities=12% Similarity=0.196 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031787 58 GELSAAELDNLMVVVAN 74 (153)
Q Consensus 58 ~~Ls~~ei~~L~~~i~~ 74 (153)
..||++|+..|..+|.+
T Consensus 60 ~~Lsd~ei~~l~~yi~~ 76 (78)
T 1gks_A 60 GRADREDLVKAIEYMLS 76 (78)
T ss_dssp TTBCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 47999999999999975
No 98
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=38.76 E-value=13 Score=30.17 Aligned_cols=41 Identities=17% Similarity=0.214 Sum_probs=26.5
Q ss_pred eeehhh-ccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHH
Q 031787 28 MFALTS-IKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVV 72 (153)
Q Consensus 28 ~~aLt~-I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~L~~~i 72 (153)
.-.|.. ++|||+++|..|+..+-=.|.. + -|..+.++..-+
T Consensus 127 ~~~Ll~~LpGIG~kTA~~iL~~a~g~p~~-~---VDt~V~Rv~~Rl 168 (287)
T 3n5n_X 127 AETLQQLLPGVGRYTAGAIASIAFGQATG-V---VDGNVARVLCRV 168 (287)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHHHSCCCCC-C---CCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHhcCCCCc-c---ccHHHHHHHHHh
Confidence 345666 9999999999999764222322 2 345666666555
No 99
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=38.40 E-value=14 Score=32.63 Aligned_cols=23 Identities=39% Similarity=0.436 Sum_probs=21.2
Q ss_pred eeehhhccccchhhHHHHHHHhC
Q 031787 28 MFALTSIKGIGRRLANIVCKKAD 50 (153)
Q Consensus 28 ~~aLt~I~GIG~~~A~~Ic~~lg 50 (153)
.+-|+.|.|||+.+|..+++.+|
T Consensus 467 eamLtAIaGIGp~tAeRLLEkFG 489 (685)
T 4gfj_A 467 YASLISIRGIDRERAERLLKKYG 489 (685)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHT
T ss_pred eeeeeccCCCCHHHHHHHHHHhc
Confidence 47789999999999999999987
No 100
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=37.55 E-value=10 Score=31.30 Aligned_cols=41 Identities=20% Similarity=0.371 Sum_probs=29.6
Q ss_pred ehhhccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHH
Q 031787 30 ALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVV 72 (153)
Q Consensus 30 aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~L~~~i 72 (153)
.|+.++|||.++|..|.+.+.=..-..+.+|.+ ++. +.+.+
T Consensus 58 ~l~~lpGIG~~~A~kI~E~l~tG~~~~le~l~~-~~p-~l~ll 98 (335)
T 2bcq_A 58 EACSIPGIGKRMAEKIIEILESGHLRKLDHISE-SVP-VLELF 98 (335)
T ss_dssp HHHTSTTCCHHHHHHHHHHHHSSSCGGGGGCCT-THH-HHHHH
T ss_pred HHhcCCCccHHHHHHHHHHHHcCCchHHHHHhh-hhH-HHHHH
Confidence 489999999999999999877555566666743 333 44444
No 101
>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1
Probab=37.21 E-value=34 Score=21.62 Aligned_cols=16 Identities=19% Similarity=0.210 Sum_probs=14.4
Q ss_pred CCCHHHHHHHHHHHhC
Q 031787 59 ELSAAELDNLMVVVAN 74 (153)
Q Consensus 59 ~Ls~~ei~~L~~~i~~ 74 (153)
.|||+|+..|..+|.+
T Consensus 67 ~Lsd~ei~~v~~yi~~ 82 (83)
T 1cc5_A 67 DCSDDELKAAIGKMSG 82 (83)
T ss_dssp SCCHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHh
Confidence 6999999999999864
No 102
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=36.95 E-value=24 Score=21.61 Aligned_cols=17 Identities=12% Similarity=0.333 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031787 58 GELSAAELDNLMVVVAN 74 (153)
Q Consensus 58 ~~Ls~~ei~~L~~~i~~ 74 (153)
..||++|+..|..+|..
T Consensus 61 ~~Ls~~ei~~l~~yl~~ 77 (79)
T 2d0s_A 61 PQVAEADIEKIVRWVLT 77 (79)
T ss_dssp TTSCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 48999999999999965
No 103
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=35.73 E-value=24 Score=27.11 Aligned_cols=29 Identities=21% Similarity=0.381 Sum_probs=21.0
Q ss_pred ehhhccccchhhHHHHHHHhCCCCCCcCCCCCH
Q 031787 30 ALTSIKGIGRRLANIVCKKADVDMNKRAGELSA 62 (153)
Q Consensus 30 aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~ 62 (153)
-+..+.|||..++..+ +.+||.. +++|-.
T Consensus 185 pv~~l~giG~~~~~~L-~~~Gi~T---igdL~~ 213 (221)
T 1im4_A 185 DIDEIPGIGSVLARRL-NELGIQK---LRDILS 213 (221)
T ss_dssp BGGGSTTCCHHHHHHH-HHTTCCB---TTC---
T ss_pred CcccccCCCHHHHHHH-HHcCCCc---HHHHHC
Confidence 3688999999988875 8899975 555543
No 104
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=34.44 E-value=17 Score=22.69 Aligned_cols=17 Identities=24% Similarity=0.388 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031787 58 GELSAAELDNLMVVVAN 74 (153)
Q Consensus 58 ~~Ls~~ei~~L~~~i~~ 74 (153)
+.||++|+..|..+|..
T Consensus 66 ~~ls~~ei~~l~~yl~~ 82 (89)
T 1c6r_A 66 GTLDDDEIAAVAAYVYD 82 (89)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHH
Confidence 46999999999999975
No 105
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*
Probab=33.85 E-value=29 Score=20.79 Aligned_cols=20 Identities=20% Similarity=0.209 Sum_probs=16.7
Q ss_pred CcCCCCCHHHHHHHHHHHhC
Q 031787 55 KRAGELSAAELDNLMVVVAN 74 (153)
Q Consensus 55 ~kv~~Ls~~ei~~L~~~i~~ 74 (153)
.+...||++|+..|..+|..
T Consensus 50 Mp~~~ls~~ei~~l~~yl~~ 69 (71)
T 1c75_A 50 MPGGIAKGAEAEAVAAWLAE 69 (71)
T ss_dssp BCSCSSCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHh
Confidence 33478999999999999975
No 106
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=33.74 E-value=25 Score=25.38 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=15.5
Q ss_pred CCCcCCCCCHHHHHHHHHHHhC
Q 031787 53 MNKRAGELSAAELDNLMVVVAN 74 (153)
Q Consensus 53 ~~~kv~~Ls~~ei~~L~~~i~~ 74 (153)
+...++.||++|.+.|.+.|..
T Consensus 3 ~~~dls~LteeE~~~Il~Vl~R 24 (134)
T 1zbd_B 3 HMRKQEELTDEEKEIINRVIAR 24 (134)
T ss_dssp -----CCCCSSHHHHHHHHHHH
T ss_pred CCCCcccCCHHHHHHHHHHHhh
Confidence 4566889999999999999965
No 107
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=32.82 E-value=32 Score=27.91 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=27.5
Q ss_pred hhhccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHH
Q 031787 31 LTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDN 67 (153)
Q Consensus 31 Lt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~ 67 (153)
+..+.|||..++..+ +.+||..-.-+..++.+++.+
T Consensus 180 v~~l~GiG~~~~~~L-~~~Gi~t~~dL~~~~~~~L~~ 215 (352)
T 1jx4_A 180 IADVPGIGNITAEKL-KKLGINKLVDTLSIEFDKLKG 215 (352)
T ss_dssp GGGSTTCCHHHHHHH-HTTTCCBGGGGGSSCHHHHHH
T ss_pred CCcccccCHHHHHHH-HHcCCchHHHHHCCCHHHHHH
Confidence 688999999998885 789998765666666665543
No 108
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=31.65 E-value=20 Score=23.36 Aligned_cols=15 Identities=7% Similarity=0.359 Sum_probs=10.6
Q ss_pred CCCHHHHHHHHHHHh
Q 031787 59 ELSAAELDNLMVVVA 73 (153)
Q Consensus 59 ~Ls~~ei~~L~~~i~ 73 (153)
.+|++|++.|+.+..
T Consensus 23 ~ft~~Ql~~Le~F~~ 37 (80)
T 1wh7_A 23 KFTAEQKEKMLAFAE 37 (80)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 478888888875544
No 109
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=31.65 E-value=32 Score=20.95 Aligned_cols=20 Identities=20% Similarity=0.131 Sum_probs=16.2
Q ss_pred CcCCCCCHHHHHHHHHHHhC
Q 031787 55 KRAGELSAAELDNLMVVVAN 74 (153)
Q Consensus 55 ~kv~~Ls~~ei~~L~~~i~~ 74 (153)
++...||++|+..|..+|..
T Consensus 61 Mp~~~ls~~ei~~l~~yl~~ 80 (82)
T 2exv_A 61 MPPNAVSDDEAQTLAKWVLS 80 (82)
T ss_dssp BCCCCCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHh
Confidence 33338999999999999975
No 110
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*
Probab=31.62 E-value=25 Score=21.64 Aligned_cols=17 Identities=12% Similarity=0.186 Sum_probs=14.8
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031787 58 GELSAAELDNLMVVVAN 74 (153)
Q Consensus 58 ~~Ls~~ei~~L~~~i~~ 74 (153)
..||++|+..|..+|..
T Consensus 62 ~~Ls~~ei~~l~~Yl~s 78 (79)
T 1c53_A 62 KRYSDEEMKAMADYMSK 78 (79)
T ss_pred hhCCHHHHHHHHHHHHh
Confidence 47999999999999864
No 111
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=31.55 E-value=23 Score=26.85 Aligned_cols=30 Identities=0% Similarity=-0.082 Sum_probs=26.1
Q ss_pred HHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 031787 45 VCKKADVDMNKRAGELSAAELDNLMVVVAN 74 (153)
Q Consensus 45 Ic~~lgi~~~~kv~~Ls~~ei~~L~~~i~~ 74 (153)
+++.+|+++..++.+|+.+|+.+|.+++..
T Consensus 211 ~~~~~~~~~~~r~~~l~~~~f~~l~~~~~~ 240 (245)
T 1yub_A 211 FHQAMKHAKVNNLSTITYEQVLSIFNSYLL 240 (245)
T ss_dssp HHHHHHHTTCSCTTSCCSHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCChhhCCHHHHHHHHHHHHH
Confidence 357889999999999999999999988743
No 112
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=31.37 E-value=9.4 Score=31.85 Aligned_cols=21 Identities=10% Similarity=0.222 Sum_probs=19.3
Q ss_pred ehhhccccchhhHHHHHHHhC
Q 031787 30 ALTSIKGIGRRLANIVCKKAD 50 (153)
Q Consensus 30 aLt~I~GIG~~~A~~Ic~~lg 50 (153)
.|+.++|||..+|..|.+.+.
T Consensus 62 ~l~~lpGIG~~~A~kI~E~l~ 82 (360)
T 2ihm_A 62 QLHGLPYFGEHSTRVIQELLE 82 (360)
T ss_dssp GGTTCTTCCHHHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHH
Confidence 499999999999999999876
No 113
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=31.18 E-value=6.1 Score=32.65 Aligned_cols=21 Identities=14% Similarity=0.324 Sum_probs=19.1
Q ss_pred ehhhccccchhhHHHHHHHhC
Q 031787 30 ALTSIKGIGRRLANIVCKKAD 50 (153)
Q Consensus 30 aLt~I~GIG~~~A~~Ic~~lg 50 (153)
.|+.++|||..+|..|.+.+.
T Consensus 58 ~l~~LpGIG~~~A~kI~E~l~ 78 (335)
T 2fmp_A 58 EAKKLPGVGTKIAEKIDEFLA 78 (335)
T ss_dssp HHHTSTTCCHHHHHHHHHHHH
T ss_pred HHhcCCCCcHHHHHHHHHHHH
Confidence 489999999999999998875
No 114
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=30.28 E-value=34 Score=23.09 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=18.1
Q ss_pred ehhhccccchhhHHHHHHHhCCCC
Q 031787 30 ALTSIKGIGRRLANIVCKKADVDM 53 (153)
Q Consensus 30 aLt~I~GIG~~~A~~Ic~~lgi~~ 53 (153)
-|+.+++||+.++..+ .++||+.
T Consensus 5 ~L~~LPNiG~~~e~~L-~~vGI~s 27 (93)
T 3bqs_A 5 NLSELPNIGKVLEQDL-IKAGIKT 27 (93)
T ss_dssp CGGGSTTCCHHHHHHH-HHTTCCS
T ss_pred HhhcCCCCCHHHHHHH-HHcCCCC
Confidence 4788889998888775 7788875
No 115
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=30.14 E-value=33 Score=20.93 Aligned_cols=17 Identities=35% Similarity=0.345 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031787 58 GELSAAELDNLMVVVAN 74 (153)
Q Consensus 58 ~~Ls~~ei~~L~~~i~~ 74 (153)
..||++|+..|..+|..
T Consensus 69 ~~ls~~ei~~l~~yl~s 85 (87)
T 2zxy_A 69 KGLSDAELKALADFILS 85 (87)
T ss_dssp GGCCHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHh
Confidence 47999999999999975
No 116
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=29.83 E-value=35 Score=20.82 Aligned_cols=17 Identities=18% Similarity=0.399 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031787 58 GELSAAELDNLMVVVAN 74 (153)
Q Consensus 58 ~~Ls~~ei~~L~~~i~~ 74 (153)
+.||++|+..|..+|.+
T Consensus 64 ~~ls~~ei~~l~~yl~~ 80 (86)
T 3ph2_B 64 GRLTDDQIAAVAAYVLD 80 (86)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 57999999999999965
No 117
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=29.76 E-value=55 Score=26.97 Aligned_cols=38 Identities=18% Similarity=0.319 Sum_probs=33.3
Q ss_pred cchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 031787 37 IGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 74 (153)
Q Consensus 37 IG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~L~~~i~~ 74 (153)
+-..++..+++.+||++.++..++++++.+.|...+++
T Consensus 331 ~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~l~~~~~~ 368 (447)
T 2i0z_A 331 VPERYFLFLLEKNEIDGSEQAGQVSHEKIRALVKDFKE 368 (447)
T ss_dssp SCHHHHHHHHHHTTCCTTSBGGGSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCCcCCchhhCCHHHHHHHHHHhhC
Confidence 45568888999999999999999999999999888876
No 118
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=29.58 E-value=35 Score=20.92 Aligned_cols=20 Identities=15% Similarity=0.150 Sum_probs=16.1
Q ss_pred CcCCCCCHHHHHHHHHHHhC
Q 031787 55 KRAGELSAAELDNLMVVVAN 74 (153)
Q Consensus 55 ~kv~~Ls~~ei~~L~~~i~~ 74 (153)
.....||++|+..|..+|..
T Consensus 59 Mp~~~Lsd~ei~~l~~yl~~ 78 (80)
T 1ayg_A 59 MPPQNVTDAEAKQLAQWILS 78 (80)
T ss_dssp BCCCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHh
Confidence 33348999999999999864
No 119
>3o0r_C Nitric oxide reductase subunit C; oxidoreductase, electron transport, heme, iron, membrane, CY membrane; HET: HEM HEC; 2.70A {Pseudomonas aeruginosa}
Probab=29.43 E-value=30 Score=23.90 Aligned_cols=20 Identities=20% Similarity=0.154 Sum_probs=16.1
Q ss_pred CcCCCCCHHHHHHHHHHHhC
Q 031787 55 KRAGELSAAELDNLMVVVAN 74 (153)
Q Consensus 55 ~kv~~Ls~~ei~~L~~~i~~ 74 (153)
...-.||++|++.|..+|..
T Consensus 112 Mp~~~Ls~~ei~~l~ayl~~ 131 (146)
T 3o0r_C 112 MPQFHLSEGQVDDLAEFLKW 131 (146)
T ss_dssp CCCCCCCHHHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHHHH
Confidence 34445999999999999964
No 120
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.04 E-value=12 Score=24.70 Aligned_cols=19 Identities=11% Similarity=0.031 Sum_probs=14.4
Q ss_pred cCCCCCHHHHHHHHHHHhC
Q 031787 56 RAGELSAAELDNLMVVVAN 74 (153)
Q Consensus 56 kv~~Ls~~ei~~L~~~i~~ 74 (153)
+...+|.+|+..|+.++..
T Consensus 16 k~k~~t~~Ql~~Le~~F~~ 34 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLK 34 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHcc
Confidence 5566888888888887754
No 121
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=28.94 E-value=11 Score=31.72 Aligned_cols=21 Identities=14% Similarity=0.271 Sum_probs=19.3
Q ss_pred ehhhccccchhhHHHHHHHhC
Q 031787 30 ALTSIKGIGRRLANIVCKKAD 50 (153)
Q Consensus 30 aLt~I~GIG~~~A~~Ic~~lg 50 (153)
.|+.++|||..+|..|.+.+.
T Consensus 81 ~l~~lpGIG~~ia~kI~E~l~ 101 (381)
T 1jms_A 81 DTEGIPCLGDKVKSIIEGIIE 101 (381)
T ss_dssp GGTTCSSCCHHHHHHHHHHHH
T ss_pred HHhcCCCCcHHHHHHHHHHHH
Confidence 489999999999999998876
No 122
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=28.76 E-value=36 Score=23.14 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=20.5
Q ss_pred eehhhccccchhhHHHHHHHhCCCC
Q 031787 29 FALTSIKGIGRRLANIVCKKADVDM 53 (153)
Q Consensus 29 ~aLt~I~GIG~~~A~~Ic~~lgi~~ 53 (153)
-.++.+.|||+..+.++-+ .||+.
T Consensus 18 K~V~evpGIG~~~~~~L~~-~Gf~k 41 (89)
T 1ci4_A 18 KPVGSLAGIGEVLGKKLEE-RGFDK 41 (89)
T ss_dssp CCGGGSTTCCHHHHHHHHH-TTCCS
T ss_pred CCcccCCCcCHHHHHHHHH-cCccH
Confidence 4578999999999999887 78775
No 123
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=28.23 E-value=53 Score=25.86 Aligned_cols=32 Identities=19% Similarity=0.166 Sum_probs=27.9
Q ss_pred HHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 031787 42 ANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 74 (153)
Q Consensus 42 A~~Ic~~lgi~~~~kv~~Ls~~ei~~L~~~i~~ 74 (153)
...+++.+|+++ .++.+||.+|+.+|.+.+.+
T Consensus 260 ~~~~l~~~~~~~-~R~e~l~~~~f~~l~~~~~~ 291 (299)
T 2h1r_A 260 CLDVLEHLDMCE-KRSINLDENDFLKLLLEFNK 291 (299)
T ss_dssp HHHHHHHTTCTT-CBGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCC-CChhhCCHHHHHHHHHHHHh
Confidence 456688899987 79999999999999999865
No 124
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=27.99 E-value=31 Score=28.02 Aligned_cols=36 Identities=22% Similarity=0.305 Sum_probs=26.5
Q ss_pred hhhccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHH
Q 031787 31 LTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDN 67 (153)
Q Consensus 31 Lt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~ 67 (153)
++.+.|||..++..+ +.+||..-.-+..++.+++.+
T Consensus 181 v~~l~GiG~~~~~~L-~~~Gi~t~~dL~~~~~~~L~~ 216 (354)
T 3bq0_A 181 IDEIPGIGSVLARRL-NELGIQKLRDILSKNYNELEK 216 (354)
T ss_dssp STTSTTCCHHHHHHH-TTTTCCBGGGGGGSCHHHHHH
T ss_pred cccccCcCHHHHHHH-HHcCCccHHHHhcCCHHHHHH
Confidence 688999999998875 789998755555556555443
No 125
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=27.88 E-value=13 Score=24.23 Aligned_cols=16 Identities=6% Similarity=0.368 Sum_probs=11.8
Q ss_pred CCCHHHHHHHHHHHhC
Q 031787 59 ELSAAELDNLMVVVAN 74 (153)
Q Consensus 59 ~Ls~~ei~~L~~~i~~ 74 (153)
.+|++|++.|+.+...
T Consensus 23 ~ft~~Ql~~Le~~f~~ 38 (80)
T 1wh5_A 23 KFTAEQKERMLALAER 38 (80)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh
Confidence 4788888888877653
No 126
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=27.85 E-value=12 Score=32.82 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=17.0
Q ss_pred eehhhccccchhhHHHHHHHhCCCCC
Q 031787 29 FALTSIKGIGRRLANIVCKKADVDMN 54 (153)
Q Consensus 29 ~aLt~I~GIG~~~A~~Ic~~lgi~~~ 54 (153)
|-|..|.|||..+|-.|...+|++++
T Consensus 44 y~l~~i~gigf~~aD~ia~~~g~~~~ 69 (574)
T 3e1s_A 44 FTLTEVEGIGFLTADKLWQARGGALD 69 (574)
T ss_dssp CGGGTSSSCCHHHHHTTC-------C
T ss_pred cccCCcCCCCHHHHHHHHHHcCCCCC
Confidence 66688999999999999999999764
No 127
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A*
Probab=27.64 E-value=19 Score=31.42 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=23.0
Q ss_pred eehhhccccchhhHHHHHHHhCCCCCCcC
Q 031787 29 FALTSIKGIGRRLANIVCKKADVDMNKRA 57 (153)
Q Consensus 29 ~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv 57 (153)
.-++.+.|||..++..+.+.+||++-..+
T Consensus 307 lPV~~l~GIG~~t~~~L~~llGI~~~~ti 335 (520)
T 3mfi_A 307 FEITSFWTLGGVLGKELIDVLDLPHENSI 335 (520)
T ss_dssp CCGGGSTTCSSHHHHHHHHHTTCCSSSHH
T ss_pred CcHHHhcCCCHHHHHHHHHhcCCCcccch
Confidence 45678999999999999998899543333
No 128
>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1
Probab=27.33 E-value=40 Score=21.00 Aligned_cols=17 Identities=12% Similarity=0.259 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031787 58 GELSAAELDNLMVVVAN 74 (153)
Q Consensus 58 ~~Ls~~ei~~L~~~i~~ 74 (153)
+.||++|+..|..+|..
T Consensus 68 ~~ls~~ei~~l~~yl~~ 84 (91)
T 1ls9_A 68 DRLDEDDIEAVSNYVYD 84 (91)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHH
Confidence 47999999999999975
No 129
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1
Probab=27.31 E-value=41 Score=20.65 Aligned_cols=16 Identities=31% Similarity=0.380 Sum_probs=14.6
Q ss_pred CCCHHHHHHHHHHHhC
Q 031787 59 ELSAAELDNLMVVVAN 74 (153)
Q Consensus 59 ~Ls~~ei~~L~~~i~~ 74 (153)
.||++|+..|..+|.+
T Consensus 66 ~ls~~ei~~l~~yl~~ 81 (88)
T 3dmi_A 66 RLSDEEIANVAAYVLA 81 (88)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6999999999999975
No 130
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Probab=27.02 E-value=37 Score=20.88 Aligned_cols=17 Identities=35% Similarity=0.630 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031787 58 GELSAAELDNLMVVVAN 74 (153)
Q Consensus 58 ~~Ls~~ei~~L~~~i~~ 74 (153)
..||++|+..|..+|.+
T Consensus 70 ~~ls~~ei~~l~~yl~~ 86 (93)
T 3dr0_A 70 GRLSDADIANVAAYIAD 86 (93)
T ss_dssp TTBCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 57999999999999965
No 131
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=27.00 E-value=29 Score=21.27 Aligned_cols=17 Identities=18% Similarity=0.112 Sum_probs=14.9
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031787 58 GELSAAELDNLMVVVAN 74 (153)
Q Consensus 58 ~~Ls~~ei~~L~~~i~~ 74 (153)
..||++|+..|..+|..
T Consensus 63 ~~Ls~~ei~~l~~yl~~ 79 (81)
T 1a56_A 63 VNVSDADAKALADWILT 79 (81)
T ss_dssp CSSSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 48999999999999864
No 132
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=26.73 E-value=17 Score=30.21 Aligned_cols=63 Identities=16% Similarity=0.157 Sum_probs=40.2
Q ss_pred cchhhhhhhcCccCCCCeeeeeehhhccccchhhHHHHHH-HhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 031787 8 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCK-KADVDMNKRAGELSAAELDNLMVVVAN 74 (153)
Q Consensus 8 ~~~~~~vri~~~~l~~~k~i~~aLt~I~GIG~~~A~~Ic~-~lgi~~~~kv~~Ls~~ei~~L~~~i~~ 74 (153)
+.|.++|+.+ .....|.+.-+|..+.+-......+.+. .+|+ ++++.+||-+|+..|.+++.+
T Consensus 269 ~~~~~vvr~~--F~qRRKtL~n~L~~l~~~~~~~l~~~l~~~~~i--~~R~e~Ls~e~f~~L~~~~~~ 332 (353)
T 1i4w_A 269 DNWDYVTRHL--MILKRTPLNTVMDSLGHGGQQYFNSRITDKDLL--KKCPIDLTNDEFIYLTKLFME 332 (353)
T ss_dssp HHHHHHHHHH--HTTTTSCTTTGGGGSSTTHHHHHTTTCCCCTTT--SSCGGGCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH--HhhchHHHHHHHHhhccccHHHHHHHhhhhcCc--ccChhhCCHHHHHHHHHHHHh
Confidence 3466777652 2345788888887653211111111222 5566 599999999999999999864
No 133
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=26.70 E-value=17 Score=32.97 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=29.1
Q ss_pred hccccchhhHHHHHHHhCCCCCCcCCCCCHHHHH
Q 031787 33 SIKGIGRRLANIVCKKADVDMNKRAGELSAAELD 66 (153)
Q Consensus 33 ~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~ 66 (153)
.|.|+|++++.+|.+..+|..-.-+-+|+.+++.
T Consensus 445 dI~GLG~k~i~~L~~~g~I~~~~DL~~L~~e~L~ 478 (667)
T 1dgs_A 445 DIEGLGEKLIERLLEKGLVRDVADLYHLRKEDLL 478 (667)
T ss_dssp CCTTCCHHHHHHHHHTTSCSSGGGGGGGCCHHHH
T ss_pred CcCcCCHHHHHHHHHcCCCCCHHHHHhcCHHHHh
Confidence 6999999999999999998887778888866653
No 134
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=26.55 E-value=31 Score=28.08 Aligned_cols=37 Identities=8% Similarity=0.138 Sum_probs=27.2
Q ss_pred ehhhccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHH
Q 031787 30 ALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDN 67 (153)
Q Consensus 30 aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~ 67 (153)
-+..+.|||+.++..+ +.+||..-.-+..++.+.+.+
T Consensus 179 pv~~l~GiG~~~~~~L-~~~GI~Ti~dL~~~~~~~L~~ 215 (356)
T 4dez_A 179 PPDALWGVGPKTTKKL-AAMGITTVADLAVTDPSVLTT 215 (356)
T ss_dssp CGGGSTTCCHHHHHHH-HHTTCCSHHHHHTSCHHHHHH
T ss_pred cHHHHcCCchhHHHHH-HHcCCCeecccccCCHHHHHH
Confidence 3678999999999876 689998655555556666543
No 135
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1
Probab=26.42 E-value=44 Score=20.78 Aligned_cols=17 Identities=35% Similarity=0.407 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031787 58 GELSAAELDNLMVVVAN 74 (153)
Q Consensus 58 ~~Ls~~ei~~L~~~i~~ 74 (153)
..||++|+..|..+|..
T Consensus 65 ~~ls~~ei~~l~~yl~~ 81 (87)
T 1cno_A 65 TALSDADIANLAAYYAS 81 (87)
T ss_dssp TTCCHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHh
Confidence 47999999999999975
No 136
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=26.14 E-value=44 Score=20.25 Aligned_cols=16 Identities=13% Similarity=0.239 Sum_probs=14.6
Q ss_pred CCCHHHHHHHHHHHhC
Q 031787 59 ELSAAELDNLMVVVAN 74 (153)
Q Consensus 59 ~Ls~~ei~~L~~~i~~ 74 (153)
.||++|+..|..+|..
T Consensus 64 ~ls~~ei~~l~~yl~~ 79 (85)
T 1gdv_A 64 RLVDEDIEDAANYVLS 79 (85)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7999999999999964
No 137
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.06 E-value=19 Score=22.88 Aligned_cols=19 Identities=21% Similarity=0.186 Sum_probs=13.7
Q ss_pred cCCCCCHHHHHHHHHHHhC
Q 031787 56 RAGELSAAELDNLMVVVAN 74 (153)
Q Consensus 56 kv~~Ls~~ei~~L~~~i~~ 74 (153)
+...+|.+|+..|+.++..
T Consensus 10 kr~~~t~~Ql~~Le~~F~~ 28 (75)
T 2da5_A 10 KYKERAPEQLRALESSFAQ 28 (75)
T ss_dssp CCCCCCHHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhc
Confidence 4455788888888887754
No 138
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3
Probab=26.04 E-value=51 Score=26.99 Aligned_cols=45 Identities=18% Similarity=0.178 Sum_probs=31.9
Q ss_pred hhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCCCCccCCccccCccC
Q 031787 40 RLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQK 89 (153)
Q Consensus 40 ~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~L~~~i~~~~~~~ip~w~~nr~k 89 (153)
.....+++.+|.. .. ..||++|++.+.+..++ +|.-++|.+.+..
T Consensus 212 ~l~~~f~~~~~~~--~~-~~lt~~e~~~i~~l~~~--ky~s~eW~~g~~P 256 (341)
T 1vqz_A 212 LLLEYMKKEYPEM--TE-YVFSEEELAEINRIKDT--KFGTWDWNYGKSP 256 (341)
T ss_dssp HHHHHHHHHCTTC--EE-CCCCHHHHHHHHHHHHH--TTTCHHHHTCCCC
T ss_pred HHHHHHHHhcCCC--CC-CCCCHHHHHHHHHHHHH--hcCCcccccCCCC
Confidence 3456677777775 12 78999999999888863 3777788875443
No 139
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=25.92 E-value=44 Score=20.50 Aligned_cols=17 Identities=24% Similarity=0.540 Sum_probs=14.8
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031787 58 GELSAAELDNLMVVVAN 74 (153)
Q Consensus 58 ~~Ls~~ei~~L~~~i~~ 74 (153)
+.||++|+..|..+|..
T Consensus 67 ~~ls~~ei~~l~~yl~~ 83 (89)
T 1f1f_A 67 GRLSPLQIEDVAAYVVD 83 (89)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 35999999999999964
No 140
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=25.77 E-value=30 Score=26.10 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=17.7
Q ss_pred ehhhccccchhhHHHHHHHhC
Q 031787 30 ALTSIKGIGRRLANIVCKKAD 50 (153)
Q Consensus 30 aLt~I~GIG~~~A~~Ic~~lg 50 (153)
.|..+.|||..+|..|.+.+.
T Consensus 195 ~L~~v~GiG~~~a~~i~~~~~ 215 (219)
T 2bgw_A 195 EISKVEGIGEKRAEEIKKILM 215 (219)
T ss_dssp HHHHSTTCCHHHHHHHHHHHH
T ss_pred HHhhCCCCCHHHHHHHHHHHh
Confidence 478899999999999988764
No 141
>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens}
Probab=24.97 E-value=45 Score=20.52 Aligned_cols=16 Identities=13% Similarity=0.038 Sum_probs=14.4
Q ss_pred CCCHHHHHHHHHHHhC
Q 031787 59 ELSAAELDNLMVVVAN 74 (153)
Q Consensus 59 ~Ls~~ei~~L~~~i~~ 74 (153)
.||++|+..|..+|..
T Consensus 67 ~ls~~ei~~l~~yi~~ 82 (85)
T 3cu4_A 67 MIPPADALKIGEYVVA 82 (85)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6999999999999864
No 142
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.60 E-value=16 Score=22.68 Aligned_cols=18 Identities=17% Similarity=0.028 Sum_probs=12.3
Q ss_pred CCCCCHHHHHHHHHHHhC
Q 031787 57 AGELSAAELDNLMVVVAN 74 (153)
Q Consensus 57 v~~Ls~~ei~~L~~~i~~ 74 (153)
--.++.+|+..|+.++..
T Consensus 11 Rt~ft~~Q~~~Le~~F~~ 28 (70)
T 2djn_A 11 RTIYSSFQLAALQRRFQK 28 (70)
T ss_dssp SCSSCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 345677788877777754
No 143
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=24.34 E-value=32 Score=31.24 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=30.5
Q ss_pred hhccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHH
Q 031787 32 TSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDN 67 (153)
Q Consensus 32 t~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~ 67 (153)
-.|.|+|++++.++.+...|..-.-+-.|+.+++..
T Consensus 449 ldI~GLG~k~i~~L~~~g~I~~~aDL~~L~~~~L~~ 484 (671)
T 2owo_A 449 MDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTG 484 (671)
T ss_dssp TCCTTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHT
T ss_pred cCCCCCCHHHHHHHHHcCCCCCHHHHHhhCHHHhhc
Confidence 579999999999999999998877788888776543
No 144
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=23.95 E-value=28 Score=29.40 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=26.2
Q ss_pred hhhccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHH
Q 031787 31 LTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDN 67 (153)
Q Consensus 31 Lt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~ 67 (153)
+..+.|||..++..+ +.+||..-.-+..++.+++.+
T Consensus 236 v~~l~GIG~~t~~~L-~~lGI~TigdLa~~~~~~L~~ 271 (420)
T 3osn_A 236 IKEIPGIGYKTAKCL-EALGINSVRDLQTFSPKILEK 271 (420)
T ss_dssp GGGSTTCCHHHHHHH-HHTTCCSHHHHHHSCHHHHHH
T ss_pred HHHccCCCHHHHHHH-HHhCCCcHHHHhhCCHHHHHH
Confidence 778999999999887 679997644444456665543
No 145
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A* 3r07_A
Probab=23.87 E-value=33 Score=26.74 Aligned_cols=42 Identities=12% Similarity=0.242 Sum_probs=30.2
Q ss_pred hhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCCCCccCCcccc
Q 031787 40 RLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFL 85 (153)
Q Consensus 40 ~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~L~~~i~~~~~~~ip~w~~ 85 (153)
.....+++.++++ ....+||++|++.+.+..++ +|.-++|.+
T Consensus 213 ~l~~~~~~~~~~~--~~~~~lt~~e~~~~~~l~~~--ky~~~~W~~ 254 (262)
T 2c8m_A 213 ALIRGFSETLHID--FREDTITEKEESLARELFDK--KYSTEEWNM 254 (262)
T ss_dssp HHHHHHHHHHTCE--EEECCCCHHHHHHHHHHHHH--TTTSHHHHH
T ss_pred HHHHHHHHHhCCC--ceecCCCHHHHHHHHHHHHh--hcCCccccC
Confidence 3455667777764 45688999999999988873 376667765
No 146
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=23.47 E-value=56 Score=20.17 Aligned_cols=17 Identities=6% Similarity=0.120 Sum_probs=14.8
Q ss_pred ccchhhHHHHHHHhCCC
Q 031787 36 GIGRRLANIVCKKADVD 52 (153)
Q Consensus 36 GIG~~~A~~Ic~~lgi~ 52 (153)
=|+..+.++|++.+|+.
T Consensus 47 ei~~g~lk~Ilkqagl~ 63 (70)
T 1whz_A 47 ELPKGTFKRILRDAGLT 63 (70)
T ss_dssp SCCHHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHHcCCC
Confidence 38999999999999864
No 147
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=23.35 E-value=85 Score=20.97 Aligned_cols=21 Identities=5% Similarity=0.039 Sum_probs=15.2
Q ss_pred cccchhhHHHHHHHhCCCCCC
Q 031787 35 KGIGRRLANIVCKKADVDMNK 55 (153)
Q Consensus 35 ~GIG~~~A~~Ic~~lgi~~~~ 55 (153)
..+...+...||+.+|+++..
T Consensus 50 ~~p~~~~l~~ia~~l~v~~~~ 70 (126)
T 3ivp_A 50 QHPSLQVLYDLVSLLNVSVDE 70 (126)
T ss_dssp CCCCHHHHHHHHHHHTCCSHH
T ss_pred CCCCHHHHHHHHHHHCcCHHH
Confidence 345667778888888888754
No 148
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=23.22 E-value=19 Score=22.47 Aligned_cols=15 Identities=7% Similarity=0.131 Sum_probs=10.7
Q ss_pred CCCHHHHHHHHHHHh
Q 031787 59 ELSAAELDNLMVVVA 73 (153)
Q Consensus 59 ~Ls~~ei~~L~~~i~ 73 (153)
.++.+|+..|+.++.
T Consensus 7 ~ft~~Q~~~Le~~F~ 21 (72)
T 1uhs_A 7 TMTEDQVEILEYNFN 21 (72)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 367777777777775
No 149
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=23.14 E-value=98 Score=25.76 Aligned_cols=46 Identities=9% Similarity=-0.060 Sum_probs=34.3
Q ss_pred chhhHHHHHHHhCCCCC---CcCCCCCHHHHHHHHHHHhCCCCccCCccccC
Q 031787 38 GRRLANIVCKKADVDMN---KRAGELSAAELDNLMVVVANPRQFKIPDWFLN 86 (153)
Q Consensus 38 G~~~A~~Ic~~lgi~~~---~kv~~Ls~~ei~~L~~~i~~~~~~~ip~w~~n 86 (153)
+..-.+..++.+|++.. .++..|++++.++|.++++. +.+..|.=.
T Consensus 295 ~p~~vK~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~---~gl~~~~~~ 343 (360)
T 4dpp_A 295 NPIGINTALAQLGVSRPVFRLPYVPLPLSKRLEFVKLVKE---IGREHFVGE 343 (360)
T ss_dssp TTHHHHHHHHHHTSSCSEEETTCCCCCHHHHHHHHHHHHH---HCGGGSSSS
T ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH---cCCcccCCc
Confidence 44557788889998643 57889999999999999986 555445433
No 150
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=23.07 E-value=53 Score=19.85 Aligned_cols=16 Identities=19% Similarity=0.102 Sum_probs=14.5
Q ss_pred CCCHHHHHHHHHHHhC
Q 031787 59 ELSAAELDNLMVVVAN 74 (153)
Q Consensus 59 ~Ls~~ei~~L~~~i~~ 74 (153)
.||++|+..|..+|..
T Consensus 65 ~ls~~ei~~l~~yl~~ 80 (82)
T 1cch_A 65 PVTEEEAKILAEWVLS 80 (82)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 7999999999999864
No 151
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=23.02 E-value=18 Score=23.11 Aligned_cols=16 Identities=6% Similarity=0.194 Sum_probs=10.2
Q ss_pred CCCHHHHHHHHHHHhC
Q 031787 59 ELSAAELDNLMVVVAN 74 (153)
Q Consensus 59 ~Ls~~ei~~L~~~i~~ 74 (153)
.++++|+..|+.++..
T Consensus 13 ~ft~~Q~~~Le~~F~~ 28 (80)
T 2cue_A 13 SFTQEQIEALEKEFER 28 (80)
T ss_dssp CSCHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHhc
Confidence 4666777777666643
No 152
>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*
Probab=22.96 E-value=71 Score=19.60 Aligned_cols=17 Identities=6% Similarity=0.130 Sum_probs=15.3
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031787 58 GELSAAELDNLMVVVAN 74 (153)
Q Consensus 58 ~~Ls~~ei~~L~~~i~~ 74 (153)
..||++|+..|..+|..
T Consensus 56 ~~ls~~ei~~l~~yl~~ 72 (80)
T 1wve_C 56 SYVDDESLTQVAEYLSS 72 (80)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 47999999999999975
No 153
>2zzs_A Cytochrome C554; C-type cytochrome, electron transport; HET: HEC; 1.80A {Vibrio parahaemolyticus}
Probab=22.86 E-value=55 Score=20.91 Aligned_cols=17 Identities=24% Similarity=0.304 Sum_probs=14.9
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031787 58 GELSAAELDNLMVVVAN 74 (153)
Q Consensus 58 ~~Ls~~ei~~L~~~i~~ 74 (153)
+.||++|+..|..+|..
T Consensus 85 ~~ls~~ei~~l~~yl~~ 101 (103)
T 2zzs_A 85 SLLSDDDIANLAAYYSS 101 (103)
T ss_dssp TTCCHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHh
Confidence 57999999999999864
No 154
>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD phasing, dissimilatory metal reduction, electron transport; HET: HEM; 1.86A {Geobacter sulfurreducens} SCOP: a.3.1.0
Probab=22.45 E-value=53 Score=21.29 Aligned_cols=16 Identities=13% Similarity=0.038 Sum_probs=14.4
Q ss_pred CCCHHHHHHHHHHHhC
Q 031787 59 ELSAAELDNLMVVVAN 74 (153)
Q Consensus 59 ~Ls~~ei~~L~~~i~~ 74 (153)
.||++|+..|..+|.+
T Consensus 81 ~Lsd~ei~~l~~Yi~~ 96 (99)
T 3dp5_A 81 MIPPADALKIGEYVVA 96 (99)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5999999999999964
No 155
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=22.38 E-value=74 Score=20.40 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=20.3
Q ss_pred CCCCCCcCCCCCHHHHHHHHHHHhC
Q 031787 50 DVDMNKRAGELSAAELDNLMVVVAN 74 (153)
Q Consensus 50 gi~~~~kv~~Ls~~ei~~L~~~i~~ 74 (153)
-+||+.+-+..|+||-+.|.++++.
T Consensus 16 ~ldP~i~k~~wT~EED~~L~~l~~~ 40 (73)
T 2llk_A 16 FQGDRNHVGKYTPEEIEKLKELRIK 40 (73)
T ss_dssp ---CCCCCCSSCHHHHHHHHHHHHH
T ss_pred ecCCCCCCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999876
No 156
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=22.36 E-value=32 Score=27.74 Aligned_cols=44 Identities=20% Similarity=0.347 Sum_probs=28.5
Q ss_pred ehhhccccchhhHHHHHHHhCCCCCCcCCC-----------CCHHHHHHHHHHHhC
Q 031787 30 ALTSIKGIGRRLANIVCKKADVDMNKRAGE-----------LSAAELDNLMVVVAN 74 (153)
Q Consensus 30 aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~-----------Ls~~ei~~L~~~i~~ 74 (153)
-|..++|||...+.. |...|+..-..+.+ +++.+...+.++++.
T Consensus 158 pL~Qlp~i~~~~~~~-l~~~~i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~~~ 212 (328)
T 3im1_A 158 PLRQIPHFNNKILEK-CKEINVETVYDIMALEDEERDEILTLTDSQLAQVAAFVNN 212 (328)
T ss_dssp GGGGSTTCCHHHHHH-HHHTTCCSHHHHHHSCHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred ceeCCCCCCHHHHHH-HHhCCCCCHHHHhcCCHHHHHhHhCCCHHHHHHHHHHHHh
Confidence 578999999999887 45667754333333 445555555566654
No 157
>2ce0_A Cytochrome C6; chloroplast, electron transport, heme, iron, thylakoid, photosynthesis, metal-binding, electron transfer; HET: HEC; 1.24A {Arabidopsis thaliana} PDB: 2ce1_A* 2dge_A* 2v07_A*
Probab=21.91 E-value=53 Score=20.87 Aligned_cols=17 Identities=24% Similarity=0.159 Sum_probs=15.4
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031787 58 GELSAAELDNLMVVVAN 74 (153)
Q Consensus 58 ~~Ls~~ei~~L~~~i~~ 74 (153)
..||++|+..|..+|..
T Consensus 77 ~~ls~~ei~~l~~yl~~ 93 (105)
T 2ce0_A 77 PRLQDEEIKLLAEFVKF 93 (105)
T ss_dssp CCBCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 57999999999999975
No 158
>1qa6_A Ribosomal protein L11; ribosomal RNA, tertiary structur,E RNA-protein interaction, minor groove binding, antibiotic binding; 2.80A {Geobacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1c04_C
Probab=21.76 E-value=98 Score=19.57 Aligned_cols=34 Identities=9% Similarity=0.190 Sum_probs=25.9
Q ss_pred hhHHHHHHHhCCCCC------CcCCCCCHHHHHHHHHHHh
Q 031787 40 RLANIVCKKADVDMN------KRAGELSAAELDNLMVVVA 73 (153)
Q Consensus 40 ~~A~~Ic~~lgi~~~------~kv~~Ls~~ei~~L~~~i~ 73 (153)
..+.-|.+.+|+.+. ..++.+|-+|+..|.+.-.
T Consensus 4 pas~Ll~kaagi~kgs~~p~~~~vG~it~~qv~eIA~~K~ 43 (67)
T 1qa6_A 4 PAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKM 43 (67)
T ss_dssp CHHHHHHHHHTCSCCCCTTSSCCCCCCTTTHHHHHHHHHG
T ss_pred CHHHHHHHHhCCCCCCCCCCCcccceecHHHHHHHHHHHH
Confidence 456667777887653 4789999999999988753
No 159
>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans}
Probab=21.15 E-value=61 Score=19.95 Aligned_cols=16 Identities=13% Similarity=0.158 Sum_probs=14.5
Q ss_pred CCCHHHHHHHHHHHhC
Q 031787 59 ELSAAELDNLMVVVAN 74 (153)
Q Consensus 59 ~Ls~~ei~~L~~~i~~ 74 (153)
.||++|+..|..+|..
T Consensus 69 ~ls~~ei~~l~~yl~~ 84 (87)
T 2zon_G 69 AADEATLRAAVAYMMD 84 (87)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7999999999999864
No 160
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.02 E-value=16 Score=23.41 Aligned_cols=16 Identities=13% Similarity=0.059 Sum_probs=11.7
Q ss_pred CCCHHHHHHHHHHHhC
Q 031787 59 ELSAAELDNLMVVVAN 74 (153)
Q Consensus 59 ~Ls~~ei~~L~~~i~~ 74 (153)
.++.+|+..|+.++..
T Consensus 23 ~ft~~Q~~~Le~~F~~ 38 (80)
T 2dmt_A 23 VFTELQLMGLEKRFEK 38 (80)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4678888888777754
No 161
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=20.95 E-value=16 Score=22.78 Aligned_cols=17 Identities=24% Similarity=0.055 Sum_probs=11.8
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031787 58 GELSAAELDNLMVVVAN 74 (153)
Q Consensus 58 ~~Ls~~ei~~L~~~i~~ 74 (153)
..++++|+..|+.++..
T Consensus 12 t~ft~~Q~~~Le~~F~~ 28 (70)
T 2cra_A 12 IPYSKGQLRELEREYAA 28 (70)
T ss_dssp CCSCHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHh
Confidence 34677888877777654
No 162
>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}
Probab=20.83 E-value=61 Score=20.27 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=15.0
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031787 58 GELSAAELDNLMVVVAN 74 (153)
Q Consensus 58 ~~Ls~~ei~~L~~~i~~ 74 (153)
..|+++|+..|..+|..
T Consensus 81 ~~ls~~ei~~l~~yl~s 97 (99)
T 1w2l_A 81 ASLSEREVAALIEFIKQ 97 (99)
T ss_dssp GGCCHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 46999999999999975
No 163
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=20.60 E-value=44 Score=21.39 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=23.6
Q ss_pred hCCCCCCcCCCCCHHHHHHHHHHHhCCCCccCCcc
Q 031787 49 ADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDW 83 (153)
Q Consensus 49 lgi~~~~kv~~Ls~~ei~~L~~~i~~~~~~~ip~w 83 (153)
.||||.++=..||++|...+=..=.. .-+.+|.|
T Consensus 22 ~gVD~~~lE~yLsdedF~~vFgmsr~-eF~~LP~W 55 (67)
T 2k6m_S 22 EGVDPLKLEIYLTDEDFEFALDMTRD-EYNALPAW 55 (67)
T ss_dssp SSSBTTBCGGGSCHHHHHHHTSSCHH-HHTTSCHH
T ss_pred CCCCchHHHhhCCHHHHHHHHCcCHH-HHHHCcHH
Confidence 59999999999999999985321100 11457877
No 164
>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A
Probab=20.53 E-value=72 Score=20.74 Aligned_cols=34 Identities=21% Similarity=0.215 Sum_probs=28.1
Q ss_pred ccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHH
Q 031787 34 IKGIGRRLANIVCKKADVDMNKRAGELSAAELDN 67 (153)
Q Consensus 34 I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ei~~ 67 (153)
..+||.......+...|++.-..+..|+++++..
T Consensus 30 L~~lgL~qY~~~F~~~g~~s~e~l~~lt~~DL~~ 63 (82)
T 3hil_A 30 LESIRMKRYILHFHSAGLDTMECVLELTAEDLTQ 63 (82)
T ss_dssp HHHTTCGGGHHHHHHTTCCSGGGGTTCCHHHHHH
T ss_pred HHhCCHHHHHHHHHHcCCChHHHHhcCCHHHHHH
Confidence 3567877778888899999888899999999754
No 165
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=20.48 E-value=1.5e+02 Score=23.56 Aligned_cols=37 Identities=8% Similarity=-0.062 Sum_probs=30.7
Q ss_pred chhhHHHHHHHhCCC----CCCcCCCCCHHHHHHHHHHHhC
Q 031787 38 GRRLANIVCKKADVD----MNKRAGELSAAELDNLMVVVAN 74 (153)
Q Consensus 38 G~~~A~~Ic~~lgi~----~~~kv~~Ls~~ei~~L~~~i~~ 74 (153)
+..-.+..++..|++ +..++..|++++.++|.+++++
T Consensus 255 ~~~~~K~al~~~G~~~~g~~R~Pl~~l~~~~~~~l~~~l~~ 295 (301)
T 3m5v_A 255 NPIPIKTAMYLAGLIESLEFRLPLCSPSKENFAKIEEVMKK 295 (301)
T ss_dssp TTHHHHHHHHHTTSSSCCCCCTTCCCCCHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHCCCCCCCCcCCCCCCCCHHHHHHHHHHHHH
Confidence 445578888899997 4567889999999999999976
No 166
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=20.22 E-value=49 Score=23.09 Aligned_cols=17 Identities=35% Similarity=0.470 Sum_probs=7.7
Q ss_pred hhhccccchhhHHHHHH
Q 031787 31 LTSIKGIGRRLANIVCK 47 (153)
Q Consensus 31 Lt~I~GIG~~~A~~Ic~ 47 (153)
|..+.|||...|..|+.
T Consensus 60 L~~i~GIse~ka~kIi~ 76 (114)
T 1b22_A 60 LINIKGISEAKADKILA 76 (114)
T ss_dssp HHTTTTCSTTHHHHHHH
T ss_pred HHHccCCCHHHHHHHHH
Confidence 33444444444444443
No 167
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=20.16 E-value=23 Score=21.79 Aligned_cols=17 Identities=12% Similarity=0.263 Sum_probs=13.7
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031787 58 GELSAAELDNLMVVVAN 74 (153)
Q Consensus 58 ~~Ls~~ei~~L~~~i~~ 74 (153)
..+|++|+..|+.++..
T Consensus 8 t~ft~~Q~~~Le~~F~~ 24 (68)
T 1yz8_P 8 THFTSQQLQQLEATFQR 24 (68)
T ss_dssp CCCCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 45789999999988865
No 168
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=20.11 E-value=18 Score=23.10 Aligned_cols=17 Identities=29% Similarity=0.384 Sum_probs=11.6
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031787 58 GELSAAELDNLMVVVAN 74 (153)
Q Consensus 58 ~~Ls~~ei~~L~~~i~~ 74 (153)
-.++++|+..|+.++..
T Consensus 12 t~ft~~Q~~~Le~~F~~ 28 (80)
T 2dms_A 12 TTFTRAQLDVLEALFAK 28 (80)
T ss_dssp SSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 34677777777777654
Done!