BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031788
(153 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TQ1|A Chain A, Solution Structure Of At5g66040, A Putative Protein From
Arabidosis Thaliana
Length = 129
Score = 111 bits (278), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 72/113 (63%), Gaps = 2/113 (1%)
Query: 30 TVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVR 89
+V V A +LL +G+ YLDVRT EEF +GH A N+PYM G KN DFL++V
Sbjct: 19 SVSVTVAHDLLLAGHRYLDVRTPEEFSQGH--ACGAINVPYMNRGASGMSKNTDFLEQVS 76
Query: 90 SLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKA 142
S + D ++VGCQSG RS+ AT DLL AGF V + GG+ AW +NGL KA
Sbjct: 77 SHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTKA 129
>pdb|3TP9|A Chain A, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
pdb|3TP9|B Chain B, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
Length = 474
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 54/123 (43%), Gaps = 22/123 (17%)
Query: 23 SSGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNP 82
+S A V +VR A L + G LDVR +E+ GH+ A +IP
Sbjct: 371 ASYANVSPDEVRGA--LAQQGLWLLDVRNVDEWAGGHLPQAH--HIP------------- 413
Query: 83 DFLKKVRSLCKEEDR---LVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLK 139
L K+ + + R + V C++G RS A + L G V N GG+ AW G
Sbjct: 414 --LSKLAAHIHDVPRDGSVCVYCRTGGRSAIAASLLRAHGVGDVRNXVGGYEAWRGKGFP 471
Query: 140 VKA 142
V+A
Sbjct: 472 VEA 474
>pdb|3IWH|A Chain A, Crystal Structure Of Rhodanese-Like Domain Protein From
Staphylococcus Aureus
pdb|3MZZ|A Chain A, Crystal Structure Of Rhodanese-Like Domain Protein From
Staphylococcus Aureus
Length = 103
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 47/114 (41%), Gaps = 15/114 (13%)
Query: 29 ITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKV 88
IT D K L +DVRT EE G++ AK+ P + PD L
Sbjct: 4 ITTDELKNKLLESKPVQIVDVRTDEETAXGYIPNAKLI--------PXDTI--PDNL--- 50
Query: 89 RSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKA 142
S K E +V C G RS L G V+ GG H AW GL++K+
Sbjct: 51 NSFNKNEIYYIV-CAGGVRSAKVVEYLEANGIDAVNVEGGXH-AWGDEGLEIKS 102
>pdb|2JTQ|A Chain A, Rhodanese From E.Coli
pdb|2JTR|A Chain A, Rhodanese Persulfide From E. Coli
pdb|2JTS|A Chain A, Rhodanese With Anions From E. Coli
Length = 85
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 22/88 (25%)
Query: 46 YLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVR-----SLCKEEDRLVV 100
++DVR E++++ HV A NIP LK+V+ ++ + D + V
Sbjct: 4 WIDVRVPEQYQQEHVQGA--INIP---------------LKEVKERIATAVPDKNDTVKV 46
Query: 101 GCQSGARSLHATADLLGAGFKHVSNFGG 128
C +G +S A L G+ HV N GG
Sbjct: 47 YCNAGRQSGQAKEILSEMGYTHVENAGG 74
>pdb|1QXN|A Chain A, Solution Structure Of The 30 Kda Polysulfide-Sulfur
Transferase Homodimer From Wolinella Succinogenes
pdb|1QXN|B Chain B, Solution Structure Of The 30 Kda Polysulfide-Sulfur
Transferase Homodimer From Wolinella Succinogenes
Length = 137
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 21 CRSSGAEVITVDVRAAKNLLESG--YGYLDVRTAEEFKE-GHVDAAKIFNIPYMFNTPEG 77
+++ A+++ + + A LL+ +DVR +E K G D + N +M
Sbjct: 15 VKAAKADMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPD---VKNYKHM-----S 66
Query: 78 RVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNG 137
R K L K S E +VV C++ AR+ A L GFK + N GG W++ G
Sbjct: 67 RGKLEPLLAK--SGLDPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDKWLEEG 124
Query: 138 L 138
L
Sbjct: 125 L 125
>pdb|3ILM|A Chain A, Crystal Structure Of The Alr3790 Protein From Anabaena Sp.
Northeast Structural Genomics Consortium Target Nsr437h
pdb|3ILM|B Chain B, Crystal Structure Of The Alr3790 Protein From Anabaena Sp.
Northeast Structural Genomics Consortium Target Nsr437h
pdb|3ILM|C Chain C, Crystal Structure Of The Alr3790 Protein From Anabaena Sp.
Northeast Structural Genomics Consortium Target Nsr437h
pdb|3ILM|D Chain D, Crystal Structure Of The Alr3790 Protein From Anabaena Sp.
Northeast Structural Genomics Consortium Target Nsr437h
Length = 141
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 13/93 (13%)
Query: 41 ESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVV 100
E + LDVR + +GH+ A I + + + SL K D V
Sbjct: 15 EPAFTILDVRDRSTYNDGHIXGAXAXPIEDLVD------------RASSSLEKSRDIYVY 62
Query: 101 GCQSGARSLHATADLLGAGFKHVSNFGGGHMAW 133
G ++ A L AGF+HVS GG AW
Sbjct: 63 GA-GDEQTSQAVNLLRSAGFEHVSELKGGLAAW 94
>pdb|3K9R|A Chain A, X-Ray Structure Of The Rhodanese-Like Domain Of The
Alr3790 Protein From Anabaena Sp. Northeast Structural
Genomics Consortium Target Nsr437c.
pdb|3K9R|B Chain B, X-Ray Structure Of The Rhodanese-Like Domain Of The
Alr3790 Protein From Anabaena Sp. Northeast Structural
Genomics Consortium Target Nsr437c.
pdb|3K9R|C Chain C, X-Ray Structure Of The Rhodanese-Like Domain Of The
Alr3790 Protein From Anabaena Sp. Northeast Structural
Genomics Consortium Target Nsr437c.
pdb|3K9R|D Chain D, X-Ray Structure Of The Rhodanese-Like Domain Of The
Alr3790 Protein From Anabaena Sp. Northeast Structural
Genomics Consortium Target Nsr437c
Length = 115
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 41/105 (39%), Gaps = 16/105 (15%)
Query: 32 DVRAAKNLLESG---YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKV 88
D K+ LE G + LDVR + +GH+ A I + + +
Sbjct: 8 DAHVLKSRLEWGEPAFTILDVRDRSTYNDGHIXGAXAXPIEDLVD------------RAS 55
Query: 89 RSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAW 133
SL K D V G S A L AGF+HVS GG AW
Sbjct: 56 SSLEKSRDIYVYGAGDEQTS-QAVNLLRSAGFEHVSELKGGLAAW 99
>pdb|2KL3|A Chain A, Solution Nmr Structure Of The Rhodanese-Like Domain From
Anabaena Sp Alr3790 Protein. Northeast Structural
Genomics Consortium Target Nsr437a
Length = 132
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 36/93 (38%), Gaps = 13/93 (13%)
Query: 41 ESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVV 100
E + LDVR + +GH+ A I + + + SL K D V
Sbjct: 18 EPAFTILDVRDRSTYNDGHIMGAMAMPIEDLVD------------RASSSLEKSRDIYVY 65
Query: 101 GCQSGARSLHATADLLGAGFKHVSNFGGGHMAW 133
G S A L AGF+HVS GG AW
Sbjct: 66 GAGDEQTS-QAVNLLRSAGFEHVSELKGGLAAW 97
>pdb|3HIX|A Chain A, Crystal Structure Of The Rhodanese_3 Like Domain From
Anabaena Sp Alr3790 Protein. Northeast Structural
Genomics Consortium Target Nsr437i
pdb|3HIX|B Chain B, Crystal Structure Of The Rhodanese_3 Like Domain From
Anabaena Sp Alr3790 Protein. Northeast Structural
Genomics Consortium Target Nsr437i
pdb|3HIX|C Chain C, Crystal Structure Of The Rhodanese_3 Like Domain From
Anabaena Sp Alr3790 Protein. Northeast Structural
Genomics Consortium Target Nsr437i
Length = 106
Score = 35.0 bits (79), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 36/93 (38%), Gaps = 13/93 (13%)
Query: 41 ESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVV 100
E + LDVR + +GH+ A I + + + SL K D V
Sbjct: 11 EPAFTILDVRDRSTYNDGHIXGAXAXPIEDLVD------------RASSSLEKSRDIYVY 58
Query: 101 GCQSGARSLHATADLLGAGFKHVSNFGGGHMAW 133
G S A L AGF+HVS GG AW
Sbjct: 59 GAGDEQTS-QAVNLLRSAGFEHVSELKGGLAAW 90
>pdb|3D1P|A Chain A, Atomic Resolution Structure Of Uncharacterized Protein
From Saccharomyces Cerevisiae
Length = 139
Score = 33.9 bits (76), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 47 LDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEED--RLVVGCQS 104
+DVR E+ H+ A+ N+PY + P+ +P +K + K + L+ C S
Sbjct: 44 VDVREPSEYSIVHIPAS--INVPYR-SHPDAFALDPLEFEKQIGIPKPDSAKELIFYCAS 100
Query: 105 GARSLHATADLLGAGFKHVSNFGGGHMAWVQNG 137
G R A G+ + S + G WV +G
Sbjct: 101 GKRGGEAQKVASSHGYSNTSLYPGSXNDWVSHG 133
>pdb|3R2U|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|C Chain C, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|D Chain D, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
Length = 466
Score = 32.3 bits (72), Expect = 0.10, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 14/84 (16%)
Query: 47 LDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGA 106
LDVR E+ GH+ A + P G++ D + D + V CQSG
Sbjct: 391 LDVRNDNEWNNGHLSQA--------VHVPHGKLLETDLP------FNKNDVIYVHCQSGI 436
Query: 107 RSLHATADLLGAGFKHVSNFGGGH 130
RS A L G+ ++ N G+
Sbjct: 437 RSSIAIGILEHKGYHNIINVNEGY 460
>pdb|1URH|A Chain A, The "rhodanese" Fold And Catalytic Mechanism Of
3-Mercaptopyruvate Sulfotransferases: Crystal Structure
Of Ssea From Escherichia Coli
pdb|1URH|B Chain B, The "rhodanese" Fold And Catalytic Mechanism Of
3-Mercaptopyruvate Sulfotransferases: Crystal Structure
Of Ssea From Escherichia Coli
Length = 280
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 24/127 (18%)
Query: 27 EVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNI----------PYMFNTPE 76
E+ +D R A G D A+E+ GH+ A F+I P+M PE
Sbjct: 19 EIQIIDARMASP------GQEDRNVAQEYLNGHIPGAVFFDIEALSDHTSPLPHMLPRPE 72
Query: 77 GRVKNPDFLKKVRSLCKEEDRLVVGCQSGA--RSLHATADLLGAGFKHVSNFGGGHMAWV 134
F +R L +D+ ++ G + A L G + VS GGG W
Sbjct: 73 ------TFAVAMRELGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLAGWQ 126
Query: 135 QNGLKVK 141
++ L ++
Sbjct: 127 RDDLLLE 133
>pdb|2HHG|A Chain A, Structure Of Protein Of Unknown Function Rpa3614, Possible
Tyrosine Phosphatase, From Rhodopseudomonas Palustris
Cga009
Length = 139
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 88 VRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKA 142
+ + +E+ + V C G RS A G K V++ GG AW G ++A
Sbjct: 79 AKPIFQEDKKFVFYCAGGLRSALAAKTAQDXGLKPVAHIEGGFGAWRDAGGPIEA 133
>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICR|B Chain B, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICS|A Chain A, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICS|B Chain B, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICT|A Chain A, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
pdb|3ICT|B Chain B, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
Length = 588
Score = 30.0 bits (66), Expect = 0.55, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 21/105 (20%)
Query: 28 VITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKK 87
V TV ++E+G +DVR E K+G + + NIP L +
Sbjct: 488 VDTVQWHEIDRIVENGGYLIDVREPNELKQGXIKGS--INIP---------------LDE 530
Query: 88 VRSLCKE---EDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGG 129
+R +E + + + CQ G R A L G+K V N GG
Sbjct: 531 LRDRLEEVPVDKDIYITCQLGXRGYVAARXLXEKGYK-VKNVDGG 574
>pdb|2W1V|A Chain A, Crystal Structure Of Mouse Nitrilase-2 At 1.4a
Resolution
pdb|2W1V|B Chain B, Crystal Structure Of Mouse Nitrilase-2 At 1.4a
Resolution
Length = 276
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 49 VRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKV 88
R +E A I ++P FN+P G PD+ +K+
Sbjct: 22 TRACSLVREAAKQGANIVSLPECFNSPYGTTYFPDYAEKI 61
>pdb|1YT8|A Chain A, Crystal Structure Of Thiosulfate Sulfurtransferase From
Pseudomonas Aeruginosa
Length = 539
Score = 28.9 bits (63), Expect = 1.2, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 14/76 (18%)
Query: 47 LDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGR-VKNPDFLKKVRSLCKEEDRLVVGCQSG 105
LDVRT EE++ GH+ ++ +TP G+ V+ D + VR RLV+ G
Sbjct: 286 LDVRTPEEYEAGHLPGSR--------STPGGQLVQETDHVASVRGA-----RLVLVDDDG 332
Query: 106 ARSLHATADLLGAGFK 121
R+ + + L G++
Sbjct: 333 VRANXSASWLAQXGWQ 348
Score = 26.2 bits (56), Expect = 7.6, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 97 RLVVGCQSGARSLHATADLLGAGFKH-VSNFGGGHMAWVQNGLKVK 141
R++V C RS+ T LL AG + V+ G + W G +++
Sbjct: 188 RVIVNCAGRTRSIIGTQSLLNAGIPNPVAALRNGTIGWTLAGQQLE 233
>pdb|3IPP|A Chain A, Crystal Structure Of Sulfur-Free Ynje
pdb|3IPP|B Chain B, Crystal Structure Of Sulfur-Free Ynje
Length = 416
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 48/110 (43%), Gaps = 11/110 (10%)
Query: 31 VDVRAAKNLLESGYGYLDVRTAEEF---KEGHV--DAAKIFNIPYMFNTPEGRVKNPDFL 85
V +R+ + + GY ++ E + GH D+ + + F+ P+G +++ D +
Sbjct: 292 VSIRSWPEFIGTTSGYSYIKPKGEIAGARWGHAGSDSTHMED----FHNPDGTMRSADDI 347
Query: 86 KKVRSL--CKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAW 133
+ K E ++ C +G R+ G+K+VS + GG W
Sbjct: 348 TAMWKAWNIKPEQQVSFYCGTGWRASETFMYARAMGWKNVSVYDGGWYEW 397
>pdb|3G5J|A Chain A, Crystal Structure Of N-Terminal Domain Of Putative AtpGTP
BINDING Protein From Clostridium Difficile 630
pdb|3G5J|B Chain B, Crystal Structure Of N-Terminal Domain Of Putative AtpGTP
BINDING Protein From Clostridium Difficile 630
Length = 134
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 39/110 (35%), Gaps = 24/110 (21%)
Query: 46 YLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRV----------------------KNPD 83
++DVRT E++E H+ A N P N V K D
Sbjct: 20 FVDVRTEGEYEEDHILNA--INXPLFKNNEHNEVGTIYKXQGKHEAIQKGFDYVSYKLKD 77
Query: 84 FLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAW 133
+ L D +V+ C G + +LL + +V GG+ A+
Sbjct: 78 IYLQAAELALNYDNIVIYCARGGXRSGSIVNLLSSLGVNVYQLEGGYKAY 127
>pdb|1GN0|A Chain A, Escherichia Coli Glpe Sulfurtransferase Soaked With Kcn
Length = 108
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 15/107 (14%)
Query: 27 EVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLK 86
E I V A + L E +D+R + F GH A + F++ +T +++ DF
Sbjct: 5 ECINV-ADAHQKLQEKEAVLVDIRDPQSFAMGH--AVQAFHLTN--DTLGAFMRDNDFDT 59
Query: 87 KVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAW 133
V +V C G S A LL G+ V + GG AW
Sbjct: 60 PV----------MVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAW 96
>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
pdb|2EH6|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
Length = 375
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 15/18 (83%)
Query: 83 DFLKKVRSLCKEEDRLVV 100
DFL K++ +CKE+D L++
Sbjct: 193 DFLSKLQEICKEKDVLLI 210
>pdb|1SZN|A Chain A, The Structure Of Alpha-Galactosidase
pdb|1T0O|A Chain A, The Structure Of Alpha-Galactosidase From Trichoderma
Reesei Complexed With Beta-D-Galactose
Length = 417
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 24 SGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVD 61
S AE+I + LL++GY Y+++ K+G VD
Sbjct: 33 SAAELIV-----SSGLLDAGYNYVNIDDCWSMKDGRVD 65
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
Length = 3089
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 104 SGARSLHATADLLGAGFKHVSNFGGGHMAWVQN 136
+ A + HA D L AG + FGG AW++
Sbjct: 26 NAADTAHALVDRLSAGEPYAVAFGGQGSAWLET 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,576,635
Number of Sequences: 62578
Number of extensions: 172374
Number of successful extensions: 487
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 464
Number of HSP's gapped (non-prelim): 26
length of query: 153
length of database: 14,973,337
effective HSP length: 90
effective length of query: 63
effective length of database: 9,341,317
effective search space: 588502971
effective search space used: 588502971
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)