Query 031788
Match_columns 153
No_of_seqs 105 out of 1107
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 05:21:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031788.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031788hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02160 thiosulfate sulfurtra 99.9 5.1E-27 1.1E-31 162.5 12.4 124 24-147 10-133 (136)
2 KOG1530 Rhodanese-related sulf 99.9 5.9E-26 1.3E-30 152.1 11.4 117 22-140 16-134 (136)
3 cd01533 4RHOD_Repeat_2 Member 99.9 1.1E-24 2.4E-29 145.3 10.8 101 24-137 5-109 (109)
4 PRK00162 glpE thiosulfate sulf 99.9 5.6E-24 1.2E-28 141.7 11.2 104 26-143 2-106 (108)
5 cd01527 RHOD_YgaP Member of th 99.9 5.9E-24 1.3E-28 139.3 9.2 98 29-140 2-99 (99)
6 cd01518 RHOD_YceA Member of th 99.9 6.3E-24 1.4E-28 139.8 8.6 97 29-135 2-101 (101)
7 cd01519 RHOD_HSP67B2 Member of 99.9 1.6E-23 3.4E-28 138.7 8.1 101 32-134 2-105 (106)
8 cd01523 RHOD_Lact_B Member of 99.9 7.6E-23 1.7E-27 134.3 9.0 94 31-134 1-99 (100)
9 cd01534 4RHOD_Repeat_3 Member 99.9 1E-22 2.2E-27 132.6 9.4 90 31-134 1-94 (95)
10 TIGR03865 PQQ_CXXCW PQQ-depend 99.9 2.5E-22 5.4E-27 142.8 11.6 115 24-140 31-162 (162)
11 cd01521 RHOD_PspE2 Member of t 99.9 2.2E-22 4.7E-27 134.5 10.6 99 28-140 7-110 (110)
12 cd01528 RHOD_2 Member of the R 99.9 2.4E-22 5.2E-27 132.2 10.2 93 31-136 2-99 (101)
13 cd01524 RHOD_Pyr_redox Member 99.9 2.6E-22 5.7E-27 129.4 9.4 89 31-134 1-89 (90)
14 cd01520 RHOD_YbbB Member of th 99.9 3.8E-22 8.3E-27 136.7 9.6 102 31-135 1-126 (128)
15 cd01444 GlpE_ST GlpE sulfurtra 99.9 5.8E-22 1.3E-26 128.8 9.8 91 30-134 1-95 (96)
16 cd01526 RHOD_ThiF Member of th 99.9 4.1E-22 8.9E-27 135.5 9.4 108 26-139 5-117 (122)
17 cd01447 Polysulfide_ST Polysul 99.9 5.7E-22 1.2E-26 130.3 9.0 101 31-137 1-103 (103)
18 cd01522 RHOD_1 Member of the R 99.9 5E-22 1.1E-26 134.2 8.6 102 31-136 1-105 (117)
19 cd01448 TST_Repeat_1 Thiosulfa 99.9 1.2E-21 2.7E-26 132.8 10.4 105 31-137 2-122 (122)
20 cd01535 4RHOD_Repeat_4 Member 99.9 2.3E-21 5.1E-26 135.5 10.8 98 36-147 2-101 (145)
21 cd01449 TST_Repeat_2 Thiosulfa 99.9 1.3E-21 2.9E-26 131.8 9.2 103 31-135 1-118 (118)
22 cd01525 RHOD_Kc Member of the 99.9 1.7E-21 3.7E-26 128.7 9.4 100 31-134 1-104 (105)
23 PRK08762 molybdopterin biosynt 99.9 2.8E-21 6.1E-26 153.9 11.4 105 28-145 2-107 (376)
24 smart00450 RHOD Rhodanese Homo 99.9 2.9E-21 6.4E-26 125.1 9.4 95 43-139 4-100 (100)
25 cd01530 Cdc25 Cdc25 phosphatas 99.9 3.5E-21 7.6E-26 130.8 9.6 94 29-134 2-120 (121)
26 PF00581 Rhodanese: Rhodanese- 99.9 4.9E-21 1.1E-25 127.3 9.4 102 32-135 1-112 (113)
27 PRK11493 sseA 3-mercaptopyruva 99.8 2.7E-20 5.8E-25 143.1 11.8 116 29-146 5-139 (281)
28 cd01529 4RHOD_Repeats Member o 99.8 8E-21 1.7E-25 123.8 6.8 85 42-134 11-95 (96)
29 PRK01415 hypothetical protein; 99.8 3.4E-20 7.4E-25 139.2 9.8 100 27-136 110-212 (247)
30 cd01532 4RHOD_Repeat_1 Member 99.8 3.6E-20 7.9E-25 120.0 8.5 81 42-135 9-92 (92)
31 PRK09629 bifunctional thiosulf 99.8 8.8E-20 1.9E-24 152.5 12.1 115 29-145 9-132 (610)
32 cd01445 TST_Repeats Thiosulfat 99.8 8.4E-20 1.8E-24 126.7 10.0 102 31-134 1-137 (138)
33 TIGR02981 phageshock_pspE phag 99.8 7.3E-20 1.6E-24 120.5 8.8 79 43-135 18-97 (101)
34 PLN02723 3-mercaptopyruvate su 99.8 1.3E-19 2.9E-24 141.5 11.4 115 28-144 21-153 (320)
35 cd01531 Acr2p Eukaryotic arsen 99.8 8.4E-20 1.8E-24 122.4 8.7 97 29-136 2-112 (113)
36 COG0607 PspE Rhodanese-related 99.8 1.5E-19 3.2E-24 119.9 9.3 89 42-143 19-109 (110)
37 PRK10287 thiosulfate:cyanide s 99.8 1.1E-19 2.4E-24 120.2 8.4 79 43-135 20-99 (104)
38 cd00158 RHOD Rhodanese Homolog 99.8 1.2E-19 2.6E-24 115.7 7.6 85 37-134 3-89 (89)
39 PRK11493 sseA 3-mercaptopyruva 99.8 2E-19 4.4E-24 138.2 9.9 111 31-143 155-280 (281)
40 PRK05320 rhodanese superfamily 99.8 2.4E-19 5.2E-24 135.9 10.0 101 26-136 107-216 (257)
41 PLN02723 3-mercaptopyruvate su 99.8 3.6E-19 7.9E-24 139.1 10.5 112 31-144 192-319 (320)
42 PRK00142 putative rhodanese-re 99.8 3.3E-19 7.1E-24 138.7 9.9 100 27-136 110-212 (314)
43 cd01443 Cdc25_Acr2p Cdc25 enzy 99.8 3E-19 6.6E-24 119.7 8.2 92 29-134 2-112 (113)
44 PRK07878 molybdopterin biosynt 99.8 1.1E-18 2.4E-23 139.6 9.7 101 26-138 284-386 (392)
45 PRK09629 bifunctional thiosulf 99.8 3.4E-18 7.3E-23 143.1 11.2 114 30-145 148-274 (610)
46 COG2897 SseA Rhodanese-related 99.8 7.3E-18 1.6E-22 128.8 10.4 114 29-144 156-284 (285)
47 PRK11784 tRNA 2-selenouridine 99.7 5E-18 1.1E-22 133.5 9.2 109 32-143 4-136 (345)
48 PRK07411 hypothetical protein; 99.7 7.8E-18 1.7E-22 134.7 9.6 104 26-139 279-385 (390)
49 PRK05597 molybdopterin biosynt 99.7 6.2E-18 1.3E-22 133.8 8.6 95 27-135 259-354 (355)
50 COG2897 SseA Rhodanese-related 99.7 4E-17 8.7E-22 124.8 12.2 122 25-148 7-144 (285)
51 TIGR03167 tRNA_sel_U_synt tRNA 99.7 9.4E-18 2E-22 130.3 8.4 98 43-143 2-122 (311)
52 cd01446 DSP_MapKP N-terminal r 99.7 1.2E-16 2.5E-21 109.9 8.9 102 31-136 2-127 (132)
53 PRK05600 thiamine biosynthesis 99.6 3.4E-16 7.5E-21 124.3 7.4 94 29-131 271-369 (370)
54 COG1054 Predicted sulfurtransf 99.5 2.8E-14 6.1E-19 108.3 6.1 99 28-136 112-213 (308)
55 PRK01269 tRNA s(4)U8 sulfurtra 99.5 5.3E-14 1.1E-18 115.5 8.2 79 36-128 400-482 (482)
56 KOG3772 M-phase inducer phosph 99.4 7.6E-13 1.6E-17 101.8 7.4 100 24-136 151-276 (325)
57 KOG1529 Mercaptopyruvate sulfu 99.4 4.7E-12 1E-16 95.8 11.2 118 29-146 5-140 (286)
58 KOG2017 Molybdopterin synthase 99.3 9E-12 2E-16 96.5 6.2 100 28-136 316-419 (427)
59 COG5105 MIH1 Mitotic inducer, 98.9 3.5E-09 7.7E-14 81.4 7.7 101 25-137 238-359 (427)
60 KOG1529 Mercaptopyruvate sulfu 98.9 3.7E-09 7.9E-14 80.2 7.5 89 44-135 173-275 (286)
61 TIGR01244 conserved hypothetic 97.9 0.00013 2.9E-09 50.2 8.4 105 28-141 12-129 (135)
62 PF04273 DUF442: Putative phos 97.6 0.00026 5.6E-09 47.2 6.4 79 29-112 13-103 (110)
63 COG2603 Predicted ATPase [Gene 97.5 0.00024 5.2E-09 54.5 5.6 99 33-134 5-127 (334)
64 PRK00142 putative rhodanese-re 96.9 0.00014 3.1E-09 56.9 -1.3 85 29-126 14-107 (314)
65 KOG1093 Predicted protein kina 96.8 0.00039 8.4E-09 57.9 0.9 97 25-133 618-718 (725)
66 cd00127 DSPc Dual specificity 96.5 0.008 1.7E-07 40.8 5.4 79 41-120 25-109 (139)
67 PF13350 Y_phosphatase3: Tyros 96.3 0.023 5.1E-07 40.1 7.2 97 26-122 25-153 (164)
68 PLN02727 NAD kinase 95.8 0.05 1.1E-06 48.2 8.0 84 28-116 266-364 (986)
69 KOG3636 Uncharacterized conser 95.3 0.065 1.4E-06 43.9 6.3 84 44-134 327-427 (669)
70 KOG1717 Dual specificity phosp 94.3 0.028 6E-07 43.0 1.9 101 30-136 5-124 (343)
71 smart00195 DSPc Dual specifici 93.8 0.33 7.1E-06 32.9 6.4 80 39-121 22-107 (138)
72 TIGR03167 tRNA_sel_U_synt tRNA 92.7 0.4 8.6E-06 37.7 6.0 67 28-108 135-209 (311)
73 COG3453 Uncharacterized protei 91.9 0.91 2E-05 30.7 6.1 80 28-114 13-106 (130)
74 PRK12361 hypothetical protein; 90.6 0.74 1.6E-05 38.8 5.9 84 32-118 109-200 (547)
75 PF13344 Hydrolase_6: Haloacid 90.0 1.1 2.3E-05 29.1 5.1 36 83-121 21-57 (101)
76 PF05706 CDKN3: Cyclin-depende 89.6 2.9 6.2E-05 29.9 7.3 82 34-119 62-159 (168)
77 PTZ00242 protein tyrosine phos 87.8 3.1 6.7E-05 29.5 6.6 77 36-119 33-124 (166)
78 PTZ00393 protein tyrosine phos 87.2 8.5 0.00018 29.2 8.9 71 44-121 118-198 (241)
79 COG2453 CDC14 Predicted protei 86.4 1.3 2.7E-05 31.9 4.0 39 83-121 93-134 (180)
80 PF00782 DSPc: Dual specificit 86.3 1.3 2.7E-05 29.7 3.8 77 44-120 20-101 (133)
81 PRK15416 lipopolysaccharide co 85.1 11 0.00023 27.9 8.3 84 24-117 35-121 (201)
82 PF03853 YjeF_N: YjeF-related 84.7 3.1 6.7E-05 29.5 5.3 39 86-125 14-57 (169)
83 COG0062 Uncharacterized conser 80.8 5.7 0.00012 29.3 5.5 30 95-125 49-81 (203)
84 PF09992 DUF2233: Predicted pe 79.8 2.9 6.3E-05 29.4 3.7 42 92-133 97-143 (170)
85 TIGR02804 ExbD_2 TonB system t 75.7 18 0.0004 24.0 6.5 43 83-126 73-118 (121)
86 cd02071 MM_CoA_mut_B12_BD meth 75.4 16 0.00035 24.3 6.2 44 83-129 41-88 (122)
87 PF02590 SPOUT_MTase: Predicte 74.5 7.8 0.00017 27.3 4.5 47 87-133 59-110 (155)
88 COG2519 GCD14 tRNA(1-methylade 74.3 7.3 0.00016 29.8 4.6 44 83-126 176-219 (256)
89 TIGR00640 acid_CoA_mut_C methy 73.4 13 0.00029 25.3 5.4 53 83-138 44-106 (132)
90 TIGR03042 PS_II_psbQ_bact phot 72.1 7.9 0.00017 26.9 4.0 52 5-56 2-68 (142)
91 PLN03050 pyridoxine (pyridoxam 72.1 6.9 0.00015 29.7 4.1 31 95-126 60-93 (246)
92 cd00079 HELICc Helicase superf 71.6 14 0.00031 23.8 5.2 46 84-130 17-62 (131)
93 PRK12898 secA preprotein trans 70.7 16 0.00036 31.8 6.4 87 33-131 422-508 (656)
94 PRK05298 excinuclease ABC subu 69.5 8.8 0.00019 33.3 4.6 48 83-131 434-481 (652)
95 PF14606 Lipase_GDSL_3: GDSL-l 69.1 6.8 0.00015 28.3 3.3 46 83-129 82-145 (178)
96 TIGR00614 recQ_fam ATP-depende 67.4 11 0.00025 31.1 4.7 38 93-131 224-261 (470)
97 TIGR00631 uvrb excinuclease AB 67.4 11 0.00024 32.8 4.8 48 83-131 430-477 (655)
98 PF03162 Y_phosphatase2: Tyros 67.4 3.9 8.5E-05 29.0 1.8 78 44-122 34-120 (164)
99 PF07172 GRP: Glycine rich pro 67.3 6.4 0.00014 25.4 2.6 9 1-10 1-9 (95)
100 PRK10565 putative carbohydrate 67.2 14 0.0003 31.1 5.2 34 92-126 57-93 (508)
101 TIGR00197 yjeF_nterm yjeF N-te 66.9 20 0.00044 26.3 5.5 34 92-126 42-78 (205)
102 PF01451 LMWPc: Low molecular 66.8 3.9 8.5E-05 27.6 1.6 36 98-133 1-41 (138)
103 COG0647 NagD Predicted sugar p 66.5 13 0.00029 28.6 4.7 34 83-119 31-65 (269)
104 PRK11267 biopolymer transport 66.0 23 0.00049 24.3 5.3 45 83-127 85-134 (141)
105 PRK00103 rRNA large subunit me 65.6 13 0.00029 26.2 4.2 47 87-133 59-110 (157)
106 PRK10310 PTS system galactitol 65.4 24 0.00052 22.4 5.0 37 97-134 4-45 (94)
107 KOG0333 U5 snRNP-like RNA heli 64.9 15 0.00033 31.2 4.9 37 94-131 516-552 (673)
108 COG0514 RecQ Superfamily II DN 64.5 7.7 0.00017 33.3 3.2 38 93-131 228-265 (590)
109 KOG2882 p-Nitrophenyl phosphat 64.4 34 0.00073 26.9 6.4 67 34-121 13-81 (306)
110 TIGR00853 pts-lac PTS system, 63.6 11 0.00024 24.1 3.2 39 94-133 2-44 (95)
111 PTZ00110 helicase; Provisional 63.5 16 0.00035 31.0 5.0 39 92-131 374-412 (545)
112 TIGR00201 comF comF family pro 63.4 12 0.00027 26.9 3.8 33 94-126 151-186 (190)
113 PF01488 Shikimate_DH: Shikima 63.4 15 0.00033 24.8 4.0 37 94-131 11-47 (135)
114 PF00218 IGPS: Indole-3-glycer 63.3 15 0.00032 28.1 4.3 90 30-124 141-236 (254)
115 PF00156 Pribosyltran: Phospho 63.2 15 0.00033 23.9 4.0 33 93-125 86-121 (125)
116 TIGR01587 cas3_core CRISPR-ass 63.0 15 0.00033 28.9 4.5 39 92-130 219-258 (358)
117 PLN03049 pyridoxine (pyridoxam 63.0 18 0.00038 30.2 5.0 30 95-125 59-91 (462)
118 PTZ00102 disulphide isomerase; 62.1 52 0.0011 26.9 7.7 26 26-51 32-58 (477)
119 KOG0685 Flavin-containing amin 62.0 13 0.00029 31.1 4.0 35 94-129 20-54 (498)
120 cd03422 YedF YedF is a bacteri 61.4 32 0.00069 20.4 5.2 36 86-122 18-53 (69)
121 PRK07688 thiamine/molybdopteri 61.1 6.6 0.00014 31.2 2.1 37 26-63 274-317 (339)
122 PF02472 ExbD: Biopolymer tran 61.1 26 0.00055 23.2 4.8 44 83-126 77-126 (130)
123 PLN02918 pyridoxine (pyridoxam 60.9 20 0.00043 30.6 5.0 31 95-126 135-168 (544)
124 TIGR00824 EIIA-man PTS system, 60.3 44 0.00095 22.1 5.8 44 83-128 43-91 (116)
125 PLN02645 phosphoglycolate phos 60.2 50 0.0011 25.7 6.9 72 28-120 13-86 (311)
126 KOG0330 ATP-dependent RNA heli 59.6 33 0.00073 28.2 5.8 47 83-132 290-336 (476)
127 COG2518 Pcm Protein-L-isoaspar 58.9 7.6 0.00016 28.8 2.0 56 81-136 57-136 (209)
128 COG2185 Sbm Methylmalonyl-CoA 58.8 25 0.00054 24.5 4.4 39 92-130 60-102 (143)
129 PRK11057 ATP-dependent DNA hel 58.6 18 0.0004 31.0 4.5 38 93-131 234-271 (607)
130 PRK13809 orotate phosphoribosy 58.3 37 0.0008 25.0 5.6 50 93-142 116-174 (206)
131 COG1891 Uncharacterized protei 58.3 22 0.00047 25.9 4.1 25 30-54 7-31 (235)
132 TIGR00537 hemK_rel_arch HemK-r 57.1 32 0.00069 24.2 5.0 47 83-129 121-167 (179)
133 PRK04192 V-type ATP synthase s 56.9 28 0.0006 30.0 5.2 36 108-144 312-347 (586)
134 PRK13802 bifunctional indole-3 56.8 81 0.0018 27.9 8.1 89 31-123 144-237 (695)
135 PRK09590 celB cellobiose phosp 56.7 15 0.00033 24.0 3.0 36 96-132 2-41 (104)
136 TIGR02689 ars_reduc_gluta arse 55.9 20 0.00043 23.9 3.6 33 97-129 2-35 (126)
137 smart00226 LMWPc Low molecular 55.6 12 0.00027 25.2 2.6 35 98-132 1-36 (140)
138 TIGR01389 recQ ATP-dependent D 55.6 21 0.00046 30.4 4.5 37 94-131 223-259 (591)
139 cd05565 PTS_IIB_lactose PTS_II 55.3 18 0.00038 23.5 3.1 36 97-133 2-41 (99)
140 PRK04837 ATP-dependent RNA hel 55.2 30 0.00065 28.0 5.1 36 94-130 254-289 (423)
141 PF02302 PTS_IIB: PTS system, 55.1 19 0.00041 22.2 3.2 25 97-121 1-30 (90)
142 PRK11776 ATP-dependent RNA hel 55.1 28 0.0006 28.6 4.9 37 94-131 241-277 (460)
143 TIGR01459 HAD-SF-IIA-hyp4 HAD- 54.5 45 0.00098 24.7 5.7 37 83-122 31-67 (242)
144 PRK13812 orotate phosphoribosy 54.3 49 0.0011 23.7 5.5 51 92-142 104-163 (176)
145 PRK11192 ATP-dependent RNA hel 54.1 33 0.00072 27.8 5.2 37 94-131 244-280 (434)
146 TIGR01043 ATP_syn_A_arch ATP s 53.7 37 0.0008 29.2 5.4 33 109-142 308-340 (578)
147 PF02863 Arg_repressor_C: Argi 53.7 24 0.00051 21.2 3.3 26 92-117 44-69 (70)
148 cd05567 PTS_IIB_mannitol PTS_I 53.4 21 0.00046 22.1 3.2 36 96-132 1-41 (87)
149 cd00133 PTS_IIB PTS_IIB: subun 53.1 17 0.00036 21.5 2.6 25 97-121 1-30 (84)
150 COG0034 PurF Glutamine phospho 53.0 25 0.00054 29.3 4.2 36 94-129 347-385 (470)
151 PRK07199 phosphoribosylpyropho 52.9 22 0.00047 27.9 3.8 31 94-124 210-243 (301)
152 COG2085 Predicted dinucleotide 52.8 80 0.0017 23.5 6.5 28 95-122 147-175 (211)
153 PRK09200 preprotein translocas 52.8 28 0.0006 31.1 4.7 39 92-131 425-463 (790)
154 cd05564 PTS_IIB_chitobiose_lic 52.8 19 0.0004 23.0 2.9 36 97-133 1-40 (96)
155 PRK10590 ATP-dependent RNA hel 52.2 28 0.00062 28.6 4.6 37 94-131 244-280 (456)
156 PF03610 EIIA-man: PTS system 51.0 67 0.0014 20.9 6.2 46 83-128 42-90 (116)
157 PRK10499 PTS system N,N'-diace 50.9 26 0.00056 22.9 3.4 27 95-121 3-33 (106)
158 COG0513 SrmB Superfamily II DN 50.8 34 0.00074 28.8 4.9 35 95-130 273-307 (513)
159 PRK04537 ATP-dependent RNA hel 50.8 33 0.00072 29.3 4.8 38 93-131 255-292 (572)
160 PF02254 TrkA_N: TrkA-N domain 50.6 63 0.0014 20.6 5.3 21 97-121 23-43 (116)
161 PRK11018 hypothetical protein; 50.3 57 0.0012 19.9 5.9 38 84-122 25-62 (78)
162 PRK12906 secA preprotein trans 49.9 36 0.00078 30.5 4.9 39 92-131 437-475 (796)
163 PF13580 SIS_2: SIS domain; PD 49.8 58 0.0013 22.0 5.2 39 83-121 90-132 (138)
164 PF00289 CPSase_L_chain: Carba 49.8 17 0.00038 23.9 2.4 30 99-128 5-34 (110)
165 PRK03092 ribose-phosphate pyro 49.6 38 0.00082 26.5 4.7 45 94-138 200-254 (304)
166 PF14572 Pribosyl_synth: Phosp 49.6 30 0.00066 25.1 3.8 32 94-125 82-116 (184)
167 TIGR00963 secA preprotein tran 49.6 32 0.00069 30.5 4.6 42 87-129 397-438 (745)
168 PRK10126 tyrosine phosphatase; 49.3 21 0.00046 24.6 2.9 36 96-132 3-39 (147)
169 PF07755 DUF1611: Protein of u 48.9 39 0.00084 26.6 4.6 77 32-136 75-157 (301)
170 COG1576 Uncharacterized conser 48.8 57 0.0012 23.1 4.9 47 85-132 57-108 (155)
171 PLN03137 ATP-dependent DNA hel 48.8 33 0.00071 32.1 4.6 37 94-131 679-715 (1195)
172 PRK00278 trpC indole-3-glycero 48.8 1.1E+02 0.0023 23.4 6.9 89 32-124 145-238 (260)
173 PF08704 GCD14: tRNA methyltra 48.5 16 0.00034 27.8 2.3 45 83-127 126-171 (247)
174 PRK11391 etp phosphotyrosine-p 47.9 25 0.00055 24.2 3.1 37 96-133 3-40 (144)
175 PF01206 TusA: Sulfurtransfera 47.8 56 0.0012 19.1 5.7 39 84-123 17-55 (70)
176 PRK04923 ribose-phosphate pyro 47.7 32 0.0007 27.2 4.0 31 94-124 216-249 (319)
177 PF06480 FtsH_ext: FtsH Extrac 47.5 14 0.00031 23.2 1.8 22 22-43 21-42 (110)
178 PRK11595 DNA utilization prote 47.5 32 0.00069 25.6 3.8 33 94-126 186-221 (227)
179 PRK09162 hypoxanthine-guanine 47.4 28 0.00061 24.9 3.4 33 94-126 96-131 (181)
180 PF10903 DUF2691: Protein of u 47.2 1E+02 0.0022 21.8 6.7 86 26-128 52-143 (153)
181 PRK13104 secA preprotein trans 47.1 38 0.00083 30.7 4.7 45 86-131 435-479 (896)
182 PRK13811 orotate phosphoribosy 46.7 75 0.0016 22.5 5.5 49 94-142 103-160 (170)
183 smart00012 PTPc_DSPc Protein t 46.6 52 0.0011 20.2 4.3 17 94-110 38-55 (105)
184 smart00404 PTPc_motif Protein 46.6 52 0.0011 20.2 4.3 17 94-110 38-55 (105)
185 PRK06781 amidophosphoribosyltr 46.5 32 0.0007 28.7 4.0 36 94-129 347-385 (471)
186 TIGR01744 XPRTase xanthine pho 46.3 74 0.0016 23.1 5.5 51 92-142 114-174 (191)
187 PRK09246 amidophosphoribosyltr 46.0 32 0.0007 28.9 4.0 35 94-128 357-394 (501)
188 PRK11784 tRNA 2-selenouridine 45.9 86 0.0019 25.1 6.2 25 33-57 154-179 (345)
189 COG4822 CbiK Cobalamin biosynt 45.8 75 0.0016 24.0 5.4 43 83-125 122-172 (265)
190 COG3414 SgaB Phosphotransferas 45.6 39 0.00084 21.7 3.5 26 96-121 2-32 (93)
191 TIGR03714 secA2 accessory Sec 45.5 46 0.001 29.7 4.9 40 92-132 421-460 (762)
192 KOG0572 Glutamine phosphoribos 45.2 40 0.00086 27.6 4.1 33 94-126 355-390 (474)
193 cd03423 SirA SirA (also known 44.7 65 0.0014 19.0 5.6 39 84-123 16-54 (69)
194 PRK11024 colicin uptake protei 44.6 65 0.0014 22.0 4.8 44 83-126 89-137 (141)
195 PF13399 LytR_C: LytR cell env 44.6 53 0.0012 20.2 4.0 29 95-123 3-33 (90)
196 PF04122 CW_binding_2: Putativ 44.5 42 0.0009 20.9 3.5 34 94-130 49-82 (92)
197 COG4545 Glutaredoxin-related p 44.3 64 0.0014 20.1 4.0 41 95-135 2-43 (85)
198 cd01134 V_A-ATPase_A V/A-type 44.3 63 0.0014 26.2 5.2 33 108-141 242-274 (369)
199 cd03420 SirA_RHOD_Pry_redox Si 43.9 68 0.0015 18.9 5.4 38 85-123 17-54 (69)
200 KOG1202 Animal-type fatty acid 43.2 1.6E+02 0.0034 28.5 7.8 49 92-140 1765-1823(2376)
201 PRK13810 orotate phosphoribosy 43.1 1E+02 0.0022 22.3 5.8 51 92-142 119-178 (187)
202 cd05566 PTS_IIB_galactitol PTS 42.9 38 0.00083 20.8 3.2 26 96-121 1-31 (89)
203 PLN02460 indole-3-glycerol-pho 42.8 1.8E+02 0.0038 23.4 8.3 89 31-123 214-314 (338)
204 PRK02269 ribose-phosphate pyro 42.7 39 0.00084 26.7 3.8 31 94-124 216-249 (320)
205 PRK13957 indole-3-glycerol-pho 42.4 1.5E+02 0.0032 22.7 6.7 89 30-123 134-227 (247)
206 PRK13530 arsenate reductase; P 42.3 49 0.0011 22.4 3.8 35 96-130 4-39 (133)
207 COG0162 TyrS Tyrosyl-tRNA synt 42.3 31 0.00068 28.2 3.3 39 97-136 32-80 (401)
208 cd03421 SirA_like_N SirA_like_ 42.1 70 0.0015 18.6 5.1 30 93-122 23-52 (67)
209 cd01424 MGS_CPS_II Methylglyox 41.9 76 0.0017 20.4 4.6 31 108-139 15-45 (110)
210 PF05984 Cytomega_UL20A: Cytom 41.8 23 0.00049 22.3 1.9 32 4-35 3-34 (100)
211 KOG0332 ATP-dependent RNA heli 41.8 30 0.00065 28.3 3.0 33 98-131 333-365 (477)
212 cd00006 PTS_IIA_man PTS_IIA, P 41.7 1E+02 0.0022 20.3 5.4 45 83-128 42-90 (122)
213 TIGR03158 cas3_cyano CRISPR-as 41.2 37 0.0008 27.0 3.5 41 94-134 271-312 (357)
214 PRK01297 ATP-dependent RNA hel 41.1 60 0.0013 26.8 4.8 38 93-131 333-370 (475)
215 PRK14665 mnmA tRNA-specific 2- 40.9 51 0.0011 26.5 4.2 30 92-121 2-31 (360)
216 PRK02458 ribose-phosphate pyro 40.8 37 0.0008 26.9 3.4 31 94-124 217-250 (323)
217 cd00115 LMWPc Substituted upda 40.5 39 0.00086 22.8 3.2 34 97-130 2-37 (141)
218 KOG1720 Protein tyrosine phosp 40.3 1.6E+02 0.0034 22.1 6.3 63 52-121 108-176 (225)
219 PRK12560 adenine phosphoribosy 40.2 95 0.0021 22.4 5.3 50 92-141 111-171 (187)
220 TIGR02190 GlrX-dom Glutaredoxi 40.2 63 0.0014 19.4 3.8 28 94-121 6-34 (79)
221 COG1040 ComFC Predicted amidop 40.0 42 0.00091 25.0 3.5 31 96-126 185-218 (225)
222 TIGR00246 tRNA_RlmH_YbeA rRNA 40.0 58 0.0013 22.9 4.0 40 92-133 63-107 (153)
223 PRK13107 preprotein translocas 40.0 61 0.0013 29.5 4.9 46 85-131 439-484 (908)
224 PF10724 DUF2516: Protein of u 39.9 63 0.0014 21.0 3.8 16 39-54 75-90 (100)
225 PRK09219 xanthine phosphoribos 39.7 1.1E+02 0.0023 22.2 5.5 51 92-142 114-174 (189)
226 COG1832 Predicted CoA-binding 39.7 1.1E+02 0.0024 21.3 5.1 38 92-130 13-53 (140)
227 COG0462 PrsA Phosphoribosylpyr 39.3 58 0.0012 25.8 4.2 30 95-124 214-246 (314)
228 TIGR02801 tolR TolR protein. T 39.2 1E+02 0.0022 20.4 5.1 44 83-126 79-127 (129)
229 PRK08264 short chain dehydroge 39.2 56 0.0012 23.6 4.0 36 94-129 5-40 (238)
230 cd05563 PTS_IIB_ascorbate PTS_ 38.8 40 0.00087 20.6 2.8 25 97-121 1-30 (86)
231 PRK12550 shikimate 5-dehydroge 38.7 92 0.002 23.9 5.2 46 83-129 109-155 (272)
232 cd06269 PBP1_glutamate_recepto 38.6 80 0.0017 23.1 4.9 38 83-120 183-220 (298)
233 PF07879 PHB_acc_N: PHB/PHA ac 38.6 49 0.0011 19.7 2.8 29 26-54 15-45 (64)
234 PRK11634 ATP-dependent RNA hel 38.5 64 0.0014 28.0 4.7 36 94-130 244-279 (629)
235 PRK12904 preprotein translocas 38.3 61 0.0013 29.2 4.6 37 92-129 427-463 (830)
236 PTZ00424 helicase 45; Provisio 38.3 82 0.0018 25.1 5.1 37 94-131 266-302 (401)
237 PRK00553 ribose-phosphate pyro 38.1 52 0.0011 26.2 3.9 32 94-125 217-251 (332)
238 PRK08341 amidophosphoribosyltr 38.1 43 0.00094 27.8 3.5 34 94-127 333-369 (442)
239 PRK05922 type III secretion sy 38.1 1E+02 0.0022 25.6 5.6 58 83-141 200-267 (434)
240 PRK07631 amidophosphoribosyltr 38.1 43 0.00092 28.1 3.5 35 94-128 347-384 (475)
241 PRK07349 amidophosphoribosyltr 38.0 50 0.0011 27.9 3.9 35 94-128 376-413 (500)
242 TIGR01090 apt adenine phosphor 37.8 56 0.0012 23.0 3.7 31 93-123 107-140 (169)
243 KOG0351 ATP-dependent DNA heli 37.6 40 0.00086 30.8 3.4 46 92-138 482-536 (941)
244 PF04722 Ssu72: Ssu72-like pro 37.6 61 0.0013 23.8 3.8 29 97-126 3-32 (195)
245 PF04343 DUF488: Protein of un 37.6 30 0.00065 22.9 2.2 21 33-53 2-24 (122)
246 PRK10669 putative cation:proto 37.3 90 0.002 26.4 5.4 47 98-145 419-468 (558)
247 PF13738 Pyr_redox_3: Pyridine 37.3 43 0.00093 23.6 3.1 31 94-126 166-196 (203)
248 TIGR02189 GlrX-like_plant Glut 37.2 62 0.0013 20.6 3.5 34 94-127 6-41 (99)
249 cd01421 IMPCH Inosine monophos 37.2 1.2E+02 0.0026 22.1 5.3 36 105-142 10-46 (187)
250 PRK02304 adenine phosphoribosy 36.9 70 0.0015 22.6 4.1 31 93-123 112-145 (175)
251 PLN02541 uracil phosphoribosyl 36.8 62 0.0013 24.6 3.9 29 93-121 155-186 (244)
252 cd03028 GRX_PICOT_like Glutare 36.5 64 0.0014 20.0 3.5 28 94-121 6-39 (90)
253 cd03027 GRX_DEP Glutaredoxin ( 36.5 72 0.0016 18.6 3.6 25 97-121 2-27 (73)
254 PF02879 PGM_PMM_II: Phosphogl 36.4 1E+02 0.0022 19.5 4.5 31 94-124 20-50 (104)
255 KOG4053 Ataxin-1, involved in 36.3 31 0.00067 25.4 2.1 75 21-107 45-120 (224)
256 PF00899 ThiF: ThiF family; I 36.3 51 0.0011 22.0 3.2 38 99-136 5-42 (135)
257 KOG0331 ATP-dependent RNA heli 36.3 2.3E+02 0.005 24.2 7.5 38 93-131 339-376 (519)
258 TIGR01203 HGPRTase hypoxanthin 36.2 62 0.0013 22.8 3.7 33 94-126 83-118 (166)
259 PRK00934 ribose-phosphate pyro 36.1 55 0.0012 25.3 3.7 31 94-124 203-236 (285)
260 cd00532 MGS-like MGS-like doma 36.0 1E+02 0.0022 20.0 4.5 11 111-121 34-44 (112)
261 cd00291 SirA_YedF_YeeD SirA, Y 35.9 89 0.0019 18.0 5.9 36 86-122 18-53 (69)
262 PRK04914 ATP-dependent helicas 35.9 57 0.0012 29.9 4.1 37 94-131 492-529 (956)
263 PRK05579 bifunctional phosphop 35.9 1.6E+02 0.0034 24.1 6.4 35 94-129 187-237 (399)
264 COG0698 RpiB Ribose 5-phosphat 35.8 1.6E+02 0.0034 20.8 5.6 59 35-114 17-78 (151)
265 KOG1503 Phosphoribosylpyrophos 35.5 1.2E+02 0.0026 23.3 5.2 53 57-116 135-187 (354)
266 PRK05793 amidophosphoribosyltr 35.5 55 0.0012 27.3 3.8 34 94-127 352-388 (469)
267 PF05430 Methyltransf_30: S-ad 35.3 39 0.00084 22.8 2.4 43 81-128 69-111 (124)
268 PRK10537 voltage-gated potassi 34.9 90 0.002 25.4 4.9 49 96-145 240-289 (393)
269 PRK00129 upp uracil phosphorib 34.6 67 0.0015 23.5 3.8 31 94-124 123-156 (209)
270 cd05568 PTS_IIB_bgl_like PTS_I 34.5 51 0.0011 19.8 2.7 22 97-118 2-24 (85)
271 PRK08525 amidophosphoribosyltr 34.5 55 0.0012 27.1 3.6 34 94-127 339-375 (445)
272 cd01132 F1_ATPase_alpha F1 ATP 34.3 1.1E+02 0.0024 23.7 5.1 32 108-140 149-180 (274)
273 COG1204 Superfamily II helicas 34.1 1.5E+02 0.0033 26.5 6.4 84 32-117 192-275 (766)
274 PRK12828 short chain dehydroge 34.1 77 0.0017 22.7 4.1 31 95-126 7-37 (239)
275 PRK05653 fabG 3-ketoacyl-(acyl 34.0 72 0.0016 22.9 3.9 26 96-121 6-31 (246)
276 PRK07322 adenine phosphoribosy 34.0 76 0.0017 22.6 3.9 31 94-124 119-152 (178)
277 PRK12548 shikimate 5-dehydroge 34.0 1.2E+02 0.0026 23.4 5.3 44 83-127 112-157 (289)
278 PRK09427 bifunctional indole-3 34.0 2.8E+02 0.0061 23.2 7.7 88 31-123 143-235 (454)
279 PRK00121 trmB tRNA (guanine-N( 33.7 92 0.002 22.5 4.4 47 82-129 136-182 (202)
280 TIGR01134 purF amidophosphorib 33.7 68 0.0015 26.6 4.0 35 94-128 337-374 (442)
281 cd03029 GRX_hybridPRX5 Glutare 33.7 81 0.0018 18.3 3.5 25 97-121 2-27 (72)
282 PRK09620 hypothetical protein; 33.7 77 0.0017 23.7 4.0 32 96-128 18-51 (229)
283 COG0848 ExbD Biopolymer transp 33.6 1.6E+02 0.0035 20.2 6.5 45 83-127 83-132 (137)
284 PLN02369 ribose-phosphate pyro 33.4 69 0.0015 25.1 3.8 34 94-127 201-237 (302)
285 TIGR01367 pyrE_Therm orotate p 33.4 79 0.0017 22.8 3.9 31 93-123 103-136 (187)
286 cd01423 MGS_CPS_I_III Methylgl 33.3 1.1E+02 0.0024 19.8 4.4 32 108-140 15-46 (116)
287 PRK05500 bifunctional orotidin 33.3 1.4E+02 0.0029 25.2 5.7 51 92-142 390-449 (477)
288 PLN02293 adenine phosphoribosy 33.3 84 0.0018 22.7 4.0 32 92-123 122-156 (187)
289 COG0357 GidB Predicted S-adeno 33.2 2.1E+02 0.0045 21.4 6.2 43 93-135 89-131 (215)
290 TIGR00365 monothiol glutaredox 33.1 84 0.0018 19.9 3.6 28 94-121 10-43 (97)
291 PLN02583 cinnamoyl-CoA reducta 32.9 76 0.0016 24.2 4.0 32 94-126 5-36 (297)
292 TIGR02621 cas3_GSU0051 CRISPR- 32.8 73 0.0016 28.8 4.3 37 93-132 270-306 (844)
293 TIGR02803 ExbD_1 TonB system t 32.8 1.5E+02 0.0032 19.6 5.6 44 83-126 71-119 (122)
294 TIGR01091 upp uracil phosphori 32.8 74 0.0016 23.3 3.8 31 94-124 121-154 (207)
295 PRK07231 fabG 3-ketoacyl-(acyl 32.8 78 0.0017 23.0 3.9 26 96-121 6-31 (251)
296 PRK07594 type III secretion sy 32.7 1.1E+02 0.0024 25.4 5.0 33 108-141 233-265 (433)
297 COG2344 AT-rich DNA-binding pr 32.6 1.2E+02 0.0027 22.4 4.7 36 94-129 145-180 (211)
298 PLN02440 amidophosphoribosyltr 32.6 60 0.0013 27.2 3.6 35 94-128 339-376 (479)
299 PF12404 DUF3663: Peptidase ; 32.5 39 0.00085 20.9 1.9 23 108-130 40-62 (77)
300 COG1440 CelA Phosphotransferas 32.3 74 0.0016 20.9 3.2 21 96-116 2-22 (102)
301 TIGR01809 Shik-DH-AROM shikima 32.3 77 0.0017 24.4 3.9 45 83-128 109-157 (282)
302 TIGR03498 FliI_clade3 flagella 32.2 1.4E+02 0.003 24.7 5.5 33 108-141 218-250 (418)
303 PRK12900 secA preprotein trans 32.2 84 0.0018 29.0 4.5 37 92-129 595-631 (1025)
304 PRK06388 amidophosphoribosyltr 32.2 62 0.0014 27.1 3.6 35 94-128 355-392 (474)
305 PRK09694 helicase Cas3; Provis 32.2 86 0.0019 28.5 4.6 49 83-131 548-598 (878)
306 COG1157 FliI Flagellar biosynt 32.0 1.3E+02 0.0028 25.0 5.2 57 83-140 206-272 (441)
307 PF14566 PTPlike_phytase: Inos 31.4 61 0.0013 22.4 3.0 42 60-106 90-135 (149)
308 PF06897 DUF1269: Protein of u 31.3 1.5E+02 0.0033 19.2 5.1 39 82-121 42-81 (102)
309 PF01135 PCMT: Protein-L-isoas 31.2 47 0.001 24.5 2.5 27 110-136 112-139 (209)
310 PRK12829 short chain dehydroge 31.1 90 0.002 22.8 4.1 33 94-127 10-42 (264)
311 PRK09426 methylmalonyl-CoA mut 31.0 1.1E+02 0.0024 27.2 5.0 53 83-138 624-686 (714)
312 cd05212 NAD_bind_m-THF_DH_Cycl 30.7 1.1E+02 0.0024 21.0 4.1 33 94-127 27-59 (140)
313 PRK02261 methylaspartate mutas 30.5 1.5E+02 0.0033 20.2 4.8 18 108-125 101-118 (137)
314 cd03409 Chelatase_Class_II Cla 30.5 1.4E+02 0.003 18.5 6.0 43 83-126 21-65 (101)
315 cd06366 PBP1_GABAb_receptor Li 30.4 1.7E+02 0.0037 22.5 5.7 39 83-121 180-218 (350)
316 TIGR02691 arsC_pI258_fam arsen 30.2 67 0.0015 21.6 2.9 14 108-121 40-53 (129)
317 PF03720 UDPG_MGDP_dh_C: UDP-g 30.0 34 0.00074 22.1 1.4 27 25-51 76-102 (106)
318 COG0394 Wzb Protein-tyrosine-p 29.9 95 0.0021 21.3 3.7 35 96-130 3-38 (139)
319 PLN02297 ribose-phosphate pyro 29.6 78 0.0017 25.2 3.6 31 94-124 229-262 (326)
320 cd02066 GRX_family Glutaredoxi 29.5 94 0.002 17.2 3.2 25 97-121 1-26 (72)
321 smart00851 MGS MGS-like domain 29.5 90 0.0019 19.3 3.3 10 112-121 23-32 (90)
322 PTZ00145 phosphoribosylpyropho 29.3 73 0.0016 26.5 3.5 33 94-126 334-369 (439)
323 PRK07814 short chain dehydroge 29.3 1E+02 0.0022 22.9 4.1 26 95-120 10-35 (263)
324 PF14681 UPRTase: Uracil phosp 29.3 1.1E+02 0.0024 22.3 4.2 31 94-124 120-155 (207)
325 PRK06827 phosphoribosylpyropho 29.2 83 0.0018 25.6 3.8 32 94-125 263-297 (382)
326 COG0794 GutQ Predicted sugar p 29.2 1.2E+02 0.0027 22.4 4.3 44 83-127 27-72 (202)
327 PF02780 Transketolase_C: Tran 29.1 88 0.0019 20.5 3.4 29 93-121 7-37 (124)
328 cd01483 E1_enzyme_family Super 28.8 1E+02 0.0022 20.7 3.7 34 99-132 2-35 (143)
329 PRK12429 3-hydroxybutyrate deh 28.6 1E+02 0.0022 22.5 4.0 26 96-121 5-30 (258)
330 KOG0029 Amine oxidase [Seconda 28.6 86 0.0019 26.5 3.9 32 94-127 14-45 (501)
331 COG0461 PyrE Orotate phosphori 28.5 2E+02 0.0043 21.3 5.3 49 93-141 110-167 (201)
332 PRK05571 ribose-5-phosphate is 28.5 2.1E+02 0.0045 20.0 5.7 59 35-114 17-78 (148)
333 PRK10886 DnaA initiator-associ 28.4 2.3E+02 0.005 20.6 5.7 45 83-128 98-144 (196)
334 COG1077 MreB Actin-like ATPase 28.4 3.1E+02 0.0068 22.0 6.8 50 96-145 101-154 (342)
335 COG4671 Predicted glycosyl tra 28.3 79 0.0017 25.7 3.3 37 94-131 8-52 (400)
336 PRK06198 short chain dehydroge 28.2 1.1E+02 0.0024 22.4 4.1 6 98-103 34-39 (260)
337 PF02534 T4SS-DNA_transf: Type 28.1 1E+02 0.0022 25.3 4.2 34 94-128 69-102 (469)
338 KOG0352 ATP-dependent DNA heli 28.1 55 0.0012 27.4 2.5 44 98-142 258-310 (641)
339 PF00102 Y_phosphatase: Protei 28.0 1E+02 0.0022 22.2 3.9 17 93-109 168-185 (235)
340 PF10006 DUF2249: Uncharacteri 27.8 1.3E+02 0.0029 17.5 3.8 47 84-133 16-63 (69)
341 TIGR01251 ribP_PPkin ribose-ph 27.8 90 0.002 24.4 3.7 33 94-126 209-244 (308)
342 PRK08622 galactose-6-phosphate 27.7 2.4E+02 0.0051 20.3 5.7 59 34-114 16-77 (171)
343 COG3620 Predicted transcriptio 27.7 76 0.0016 22.8 2.9 31 99-129 75-105 (187)
344 KOG2585 Uncharacterized conser 27.6 88 0.0019 26.0 3.6 29 98-126 269-300 (453)
345 cd06350 PBP1_GPCR_family_C_lik 27.6 1.5E+02 0.0032 22.8 4.9 44 83-126 205-248 (348)
346 PRK00377 cbiT cobalt-precorrin 27.6 1.6E+02 0.0035 21.0 4.8 43 83-126 126-168 (198)
347 PF13607 Succ_CoA_lig: Succiny 27.5 1.4E+02 0.0031 20.4 4.2 47 83-130 44-91 (138)
348 TIGR00689 rpiB_lacA_lacB sugar 27.4 2.2E+02 0.0047 19.8 5.7 58 35-114 15-75 (144)
349 COG0541 Ffh Signal recognition 27.3 1.8E+02 0.0039 24.3 5.3 46 83-128 199-251 (451)
350 PLN00141 Tic62-NAD(P)-related 27.3 1.1E+02 0.0023 22.7 3.9 32 94-126 16-47 (251)
351 COG0035 Upp Uracil phosphoribo 27.3 1.1E+02 0.0025 22.7 3.9 42 94-135 123-173 (210)
352 PRK02812 ribose-phosphate pyro 27.2 87 0.0019 24.9 3.5 34 94-127 229-265 (330)
353 PRK09273 hypothetical protein; 27.1 1.4E+02 0.0031 22.2 4.3 70 25-114 11-83 (211)
354 PF12119 DUF3581: Protein of u 27.0 59 0.0013 24.2 2.3 21 83-103 132-155 (218)
355 PRK08972 fliI flagellum-specif 27.0 1.7E+02 0.0037 24.4 5.2 46 95-141 217-272 (444)
356 PF11181 YflT: Heat induced st 26.9 94 0.002 19.9 3.1 7 97-103 28-34 (103)
357 PRK02277 orotate phosphoribosy 26.9 1.1E+02 0.0023 22.3 3.7 31 93-123 138-171 (200)
358 PF02390 Methyltransf_4: Putat 26.8 1.5E+02 0.0033 21.4 4.5 46 83-129 30-75 (195)
359 cd04468 S1_eIF5A S1_eIF5A: Euk 26.8 1.4E+02 0.0031 18.0 3.6 43 43-100 5-52 (69)
360 TIGR03840 TMPT_Se_Te thiopurin 26.7 1.3E+02 0.0029 22.1 4.2 45 83-132 22-68 (213)
361 PRK09189 uroporphyrinogen-III 26.7 1.4E+02 0.003 22.0 4.4 38 83-121 106-143 (240)
362 cd01078 NAD_bind_H4MPT_DH NADP 26.7 1.3E+02 0.0028 21.4 4.1 33 94-127 27-59 (194)
363 PLN02335 anthranilate synthase 26.6 1.4E+02 0.003 22.1 4.3 32 94-126 17-48 (222)
364 PF02558 ApbA: Ketopantoate re 26.6 1.3E+02 0.0028 20.2 4.0 45 99-144 1-47 (151)
365 cd02072 Glm_B12_BD B12 binding 26.5 1.8E+02 0.0039 19.8 4.5 12 112-123 101-112 (128)
366 PRK05786 fabG 3-ketoacyl-(acyl 26.5 1.1E+02 0.0025 21.9 3.9 25 96-120 6-30 (238)
367 PF00462 Glutaredoxin: Glutare 26.3 1.1E+02 0.0024 16.9 3.1 24 98-121 1-25 (60)
368 KOG3040 Predicted sugar phosph 26.2 2.1E+02 0.0046 21.6 5.1 15 107-121 52-66 (262)
369 cd05191 NAD_bind_amino_acid_DH 26.1 1.6E+02 0.0035 17.9 4.3 32 95-127 23-54 (86)
370 TIGR03372 putres_am_tran putre 26.1 1.2E+02 0.0025 25.1 4.2 52 83-134 121-177 (442)
371 PRK14188 bifunctional 5,10-met 26.1 1.3E+02 0.0028 23.6 4.2 33 94-127 157-189 (296)
372 PF06922 CTV_P13: Citrus trist 26.0 24 0.00052 22.5 0.1 43 1-50 1-43 (119)
373 PRK01259 ribose-phosphate pyro 26.0 97 0.0021 24.3 3.5 32 94-125 207-241 (309)
374 COG0373 HemA Glutamyl-tRNA red 25.9 1.8E+02 0.0039 24.1 5.1 37 94-131 177-213 (414)
375 cd00047 PTPc Protein tyrosine 25.8 1E+02 0.0023 22.5 3.6 17 94-110 165-182 (231)
376 PRK08349 hypothetical protein; 25.8 1.2E+02 0.0025 21.9 3.8 22 99-120 4-25 (198)
377 CHL00060 atpB ATP synthase CF1 25.7 1.7E+02 0.0038 24.7 5.1 34 108-141 249-282 (494)
378 PF10740 DUF2529: Protein of u 25.7 1.1E+02 0.0023 22.1 3.4 32 92-123 79-112 (172)
379 TIGR03244 arg_catab_AstA argin 25.6 1.1E+02 0.0024 24.5 3.7 81 44-129 156-254 (336)
380 PRK07326 short chain dehydroge 25.5 1.3E+02 0.0029 21.5 4.1 26 96-121 7-32 (237)
381 PRK12939 short chain dehydroge 25.5 1.9E+02 0.0042 20.8 5.0 27 95-121 7-33 (250)
382 PRK00258 aroE shikimate 5-dehy 25.4 2E+02 0.0043 21.9 5.2 48 83-131 108-158 (278)
383 PRK07272 amidophosphoribosyltr 25.4 1E+02 0.0023 25.9 3.8 35 94-128 349-386 (484)
384 PRK09280 F0F1 ATP synthase sub 25.4 2.2E+02 0.0048 23.9 5.6 33 108-141 225-258 (463)
385 PRK07847 amidophosphoribosyltr 25.1 1.1E+02 0.0024 26.0 3.9 35 94-128 366-403 (510)
386 PRK08762 molybdopterin biosynt 25.1 74 0.0016 25.5 2.8 41 94-135 134-174 (376)
387 PRK08558 adenine phosphoribosy 25.1 2.1E+02 0.0045 21.5 5.1 50 92-141 173-232 (238)
388 cd05311 NAD_bind_2_malic_enz N 25.0 1.2E+02 0.0026 22.5 3.7 34 94-128 24-59 (226)
389 COG2521 Predicted archaeal met 25.0 2.4E+02 0.0051 21.8 5.2 45 83-127 226-277 (287)
390 PTZ00215 ribose 5-phosphate is 25.0 2.5E+02 0.0054 19.7 6.0 58 35-114 19-81 (151)
391 PF13478 XdhC_C: XdhC Rossmann 24.9 1.1E+02 0.0024 20.8 3.3 30 99-129 1-30 (136)
392 PF13662 Toprim_4: Toprim doma 24.8 1.4E+02 0.003 18.0 3.5 17 113-129 13-29 (81)
393 KOG0924 mRNA splicing factor A 24.7 1.2E+02 0.0027 27.1 4.1 40 83-122 359-399 (1042)
394 PRK12825 fabG 3-ketoacyl-(acyl 24.7 2.1E+02 0.0045 20.4 5.0 27 95-121 6-32 (249)
395 COG2241 CobL Precorrin-6B meth 24.6 1.9E+02 0.0041 21.5 4.6 30 93-122 138-167 (210)
396 PRK05557 fabG 3-ketoacyl-(acyl 24.6 1.3E+02 0.0029 21.5 4.0 27 95-121 5-31 (248)
397 PF01872 RibD_C: RibD C-termin 24.6 2.2E+02 0.0048 20.2 5.0 43 96-138 99-155 (200)
398 TIGR00336 pyrE orotate phospho 24.6 1.4E+02 0.0031 21.0 3.9 51 92-142 105-166 (173)
399 PF07991 IlvN: Acetohydroxy ac 24.6 2.1E+02 0.0045 20.5 4.7 47 94-141 3-52 (165)
400 cd04509 PBP1_ABC_transporter_G 24.3 1.4E+02 0.003 21.8 4.0 38 83-120 179-216 (299)
401 PRK03562 glutathione-regulated 24.3 1.9E+02 0.0041 25.1 5.2 48 97-145 401-451 (621)
402 PRK02118 V-type ATP synthase s 24.2 1.9E+02 0.0041 24.1 5.0 35 108-142 218-252 (436)
403 PF10731 Anophelin: Thrombin i 24.2 1.2E+02 0.0025 17.9 2.7 20 5-24 3-22 (65)
404 COG4122 Predicted O-methyltran 24.2 1.8E+02 0.004 21.7 4.5 36 92-127 81-117 (219)
405 PF00590 TP_methylase: Tetrapy 24.1 2.7E+02 0.0058 19.7 6.4 105 26-143 10-132 (210)
406 PRK06719 precorrin-2 dehydroge 24.1 1.6E+02 0.0034 20.5 4.0 33 94-128 12-44 (157)
407 PLN02695 GDP-D-mannose-3',5'-e 24.0 1.3E+02 0.0027 24.0 3.9 33 93-126 19-51 (370)
408 COG1611 Predicted Rossmann fol 24.0 1.1E+02 0.0025 22.5 3.4 35 94-131 13-56 (205)
409 cd06327 PBP1_SBP_like_1 Peripl 24.0 1.7E+02 0.0036 22.5 4.6 44 83-126 178-222 (334)
410 KOG1370 S-adenosylhomocysteine 23.9 1.7E+02 0.0038 23.5 4.5 50 95-144 213-264 (434)
411 PRK06371 translation initiatio 23.8 2.7E+02 0.0058 22.3 5.6 10 112-121 189-198 (329)
412 PRK12549 shikimate 5-dehydroge 23.8 2.4E+02 0.0052 21.7 5.3 46 83-129 113-160 (284)
413 PRK12826 3-ketoacyl-(acyl-carr 23.8 1.4E+02 0.003 21.6 3.9 23 98-120 9-31 (251)
414 cd06352 PBP1_NPR_GC_like Ligan 23.7 1.7E+02 0.0038 22.9 4.7 38 83-121 183-220 (389)
415 PRK07523 gluconate 5-dehydroge 23.7 1.4E+02 0.003 21.8 3.9 31 95-126 10-40 (255)
416 TIGR01832 kduD 2-deoxy-D-gluco 23.7 1.5E+02 0.0032 21.5 4.0 25 96-120 6-30 (248)
417 PF02629 CoA_binding: CoA bind 23.7 1.3E+02 0.0027 18.9 3.2 34 96-129 63-96 (96)
418 PRK06936 type III secretion sy 23.6 2.2E+02 0.0047 23.8 5.2 32 109-141 241-272 (439)
419 PRK06523 short chain dehydroge 23.5 1.5E+02 0.0032 21.8 4.0 32 94-126 8-39 (260)
420 COG2247 LytB Putative cell wal 23.5 3.9E+02 0.0085 21.4 7.5 37 83-121 66-102 (337)
421 cd06323 PBP1_ribose_binding Pe 23.5 2.3E+02 0.005 20.5 5.1 32 95-126 180-211 (268)
422 PRK10329 glutaredoxin-like pro 23.5 1.5E+02 0.0032 18.1 3.4 25 97-121 2-27 (81)
423 PRK09123 amidophosphoribosyltr 23.4 1.2E+02 0.0027 25.4 3.9 34 94-127 359-395 (479)
424 PRK08945 putative oxoacyl-(acy 23.4 1.5E+02 0.0033 21.5 4.1 26 95-120 12-37 (247)
425 PRK12749 quinate/shikimate deh 23.2 2.4E+02 0.0052 21.8 5.2 45 83-128 110-156 (288)
426 PRK10113 cell division modulat 23.2 13 0.00029 22.3 -1.3 44 94-138 8-51 (80)
427 PRK14664 tRNA-specific 2-thiou 23.2 1.6E+02 0.0034 23.8 4.3 28 94-121 4-31 (362)
428 PRK06935 2-deoxy-D-gluconate 3 23.2 1.2E+02 0.0027 22.2 3.6 28 94-121 14-41 (258)
429 COG1926 Predicted phosphoribos 23.1 1.5E+02 0.0033 22.1 3.9 34 94-127 123-159 (220)
430 PRK14968 putative methyltransf 23.1 2.6E+02 0.0056 19.2 5.4 40 83-122 129-168 (188)
431 TIGR01120 rpiB ribose 5-phosph 23.1 2.7E+02 0.0058 19.4 5.7 58 35-114 16-76 (143)
432 PRK12615 galactose-6-phosphate 23.1 2.9E+02 0.0064 19.8 5.8 58 35-114 17-77 (171)
433 PRK14599 trmD tRNA (guanine-N( 23.1 1.9E+02 0.0041 21.8 4.3 8 96-103 104-111 (222)
434 COG0529 CysC Adenylylsulfate k 23.0 95 0.002 22.8 2.7 22 108-130 40-61 (197)
435 TIGR03245 arg_AOST_alph argini 22.9 1.2E+02 0.0026 24.3 3.5 81 44-129 157-255 (336)
436 PF12996 DUF3880: DUF based on 22.8 96 0.0021 18.8 2.4 31 93-129 17-47 (79)
437 PRK07890 short chain dehydroge 22.7 1.6E+02 0.0035 21.4 4.1 25 96-120 6-30 (258)
438 KOG3062 RNA polymerase II elon 22.7 1.5E+02 0.0032 22.8 3.7 32 97-128 2-39 (281)
439 PRK07060 short chain dehydroge 22.7 1.5E+02 0.0032 21.4 3.9 31 95-126 9-39 (245)
440 PF13362 Toprim_3: Toprim doma 22.7 2E+02 0.0043 17.8 4.5 33 93-126 39-77 (96)
441 cd01080 NAD_bind_m-THF_DH_Cycl 22.6 1.4E+02 0.003 21.2 3.5 36 94-130 43-78 (168)
442 TIGR03243 arg_catab_AOST argin 22.6 1.2E+02 0.0026 24.3 3.5 81 44-129 156-254 (335)
443 PRK09135 pteridine reductase; 22.6 1.6E+02 0.0035 21.1 4.1 26 96-121 7-32 (249)
444 PF05990 DUF900: Alpha/beta hy 22.6 2.1E+02 0.0047 21.2 4.7 39 79-117 137-175 (233)
445 PF02961 BAF: Barrier to autoi 22.5 33 0.00071 21.9 0.2 24 107-130 27-50 (89)
446 TIGR01042 V-ATPase_V1_A V-type 22.5 1.5E+02 0.0033 25.7 4.2 32 109-141 314-345 (591)
447 PRK03659 glutathione-regulated 22.5 2.2E+02 0.0048 24.5 5.3 48 97-145 401-451 (601)
448 PRK15083 PTS system mannitol-s 22.5 1.4E+02 0.003 26.1 4.1 34 94-127 377-415 (639)
449 PRK10444 UMP phosphatase; Prov 22.5 1.9E+02 0.0042 21.7 4.5 35 83-120 24-59 (248)
450 PRK09401 reverse gyrase; Revie 22.5 1.3E+02 0.0029 28.3 4.2 35 95-130 328-365 (1176)
451 PRK13940 glutamyl-tRNA reducta 22.5 2.3E+02 0.005 23.3 5.2 35 94-129 180-214 (414)
452 PF06866 DUF1256: Protein of u 22.5 1.9E+02 0.0041 20.7 4.1 42 83-124 11-59 (163)
453 PRK07454 short chain dehydroge 22.4 1.7E+02 0.0036 21.1 4.1 11 94-104 29-39 (241)
454 TIGR02622 CDP_4_6_dhtase CDP-g 22.4 1.5E+02 0.0032 23.2 4.0 32 94-126 3-34 (349)
455 PRK13256 thiopurine S-methyltr 22.4 1.8E+02 0.0039 21.8 4.3 45 82-131 30-76 (226)
456 COG4567 Response regulator con 22.4 2.1E+02 0.0047 20.5 4.3 39 93-132 7-45 (182)
457 cd06209 BenDO_FAD_NAD Benzoate 22.4 1.1E+02 0.0024 22.2 3.2 33 93-125 190-222 (228)
458 COG0169 AroE Shikimate 5-dehyd 22.4 2.6E+02 0.0055 21.8 5.2 47 83-130 110-160 (283)
459 TIGR03206 benzo_BadH 2-hydroxy 22.3 1.6E+02 0.0035 21.3 4.0 25 96-120 4-28 (250)
460 COG0603 Predicted PP-loop supe 22.2 1.7E+02 0.0036 22.0 4.0 6 116-121 52-57 (222)
461 PLN03209 translocon at the inn 22.2 1.5E+02 0.0032 25.6 4.2 32 94-126 79-110 (576)
462 cd03418 GRX_GRXb_1_3_like Glut 22.2 1.5E+02 0.0033 17.0 3.2 24 98-121 2-26 (75)
463 cd08242 MDR_like Medium chain 22.2 2.5E+02 0.0053 21.3 5.2 39 92-132 153-191 (319)
464 PRK06172 short chain dehydroge 22.1 1.6E+02 0.0034 21.5 4.0 24 95-118 31-54 (253)
465 cd01300 YtcJ_like YtcJ_like me 22.1 1.2E+02 0.0026 24.9 3.6 30 92-121 109-138 (479)
466 PRK10456 arginine succinyltran 22.0 1.3E+02 0.0028 24.2 3.5 82 44-130 158-257 (344)
467 PF04127 DFP: DNA / pantothena 21.9 83 0.0018 22.7 2.3 32 98-130 20-53 (185)
468 PF02142 MGS: MGS-like domain 21.9 1.3E+02 0.0028 18.8 3.0 28 111-139 5-32 (95)
469 PLN02238 hypoxanthine phosphor 21.9 1.4E+02 0.0031 21.5 3.6 31 94-124 96-129 (189)
470 KOG0534 NADH-cytochrome b-5 re 21.9 2.5E+02 0.0054 22.0 5.0 26 96-121 253-279 (286)
471 COG0059 IlvC Ketol-acid reduct 21.8 1.7E+02 0.0037 23.3 4.1 50 94-144 17-69 (338)
472 PRK05875 short chain dehydroge 21.8 1.6E+02 0.0034 21.8 4.0 26 95-120 7-32 (276)
473 TIGR02354 thiF_fam2 thiamine b 21.8 1.5E+02 0.0033 21.5 3.7 35 95-130 21-55 (200)
474 TIGR00088 trmD tRNA (guanine-N 21.7 1.8E+02 0.0039 22.1 4.0 36 94-129 101-138 (233)
475 cd06363 PBP1_Taste_receptor Li 21.7 2.4E+02 0.0052 22.6 5.2 40 83-122 222-261 (410)
476 PLN00016 RNA-binding protein; 21.7 1.3E+02 0.0028 23.9 3.6 32 96-128 53-88 (378)
477 KOG0652 26S proteasome regulat 21.6 63 0.0014 25.4 1.7 71 45-129 160-248 (424)
478 PF13460 NAD_binding_10: NADH( 21.6 1.3E+02 0.0029 20.6 3.3 12 94-105 21-32 (183)
479 COG0556 UvrB Helicase subunit 21.6 2.3E+02 0.0049 24.6 4.9 50 83-133 434-483 (663)
480 PRK13354 tyrosyl-tRNA syntheta 21.5 1.2E+02 0.0026 24.9 3.3 42 93-135 29-80 (410)
481 TIGR01963 PHB_DH 3-hydroxybuty 21.5 1.5E+02 0.0033 21.4 3.7 26 94-119 24-49 (255)
482 PRK08927 fliI flagellum-specif 21.5 3E+02 0.0066 22.9 5.7 33 109-142 237-269 (442)
483 PF14671 DSPn: Dual specificit 21.5 2.1E+02 0.0046 19.8 4.1 23 93-115 65-87 (141)
484 cd01422 MGS Methylglyoxal synt 21.5 2.3E+02 0.005 18.6 4.2 9 112-120 37-46 (115)
485 cd06340 PBP1_ABC_ligand_bindin 21.5 2E+02 0.0043 22.3 4.5 40 83-122 187-226 (347)
486 COG0503 Apt Adenine/guanine ph 21.4 2.1E+02 0.0044 20.5 4.3 31 92-122 113-146 (179)
487 PRK07067 sorbitol dehydrogenas 21.4 2.6E+02 0.0056 20.4 5.0 31 95-126 6-36 (257)
488 PRK15088 PTS system mannose-sp 21.4 3.2E+02 0.007 21.6 5.7 44 83-128 44-92 (322)
489 PF09861 DUF2088: Domain of un 21.4 2E+02 0.0043 21.2 4.2 35 92-126 51-94 (204)
490 PRK10853 putative reductase; P 21.4 1.3E+02 0.0029 19.9 3.1 24 98-121 2-26 (118)
491 PRK06124 gluconate 5-dehydroge 21.3 1.7E+02 0.0037 21.3 4.0 26 95-120 11-36 (256)
492 TIGR01848 PHA_reg_PhaR polyhyd 21.3 1.3E+02 0.0029 19.8 2.9 30 26-55 15-46 (107)
493 TIGR03649 ergot_EASG ergot alk 21.2 1.5E+02 0.0031 22.3 3.7 28 98-126 2-29 (285)
494 TIGR01675 plant-AP plant acid 21.2 3.7E+02 0.0079 20.2 5.8 77 44-122 79-164 (229)
495 PRK08265 short chain dehydroge 21.2 1.7E+02 0.0038 21.6 4.0 31 95-126 6-36 (261)
496 PRK08329 threonine synthase; V 21.2 3.2E+02 0.0069 21.7 5.7 65 66-130 74-138 (347)
497 PRK10026 arsenate reductase; P 21.2 1.6E+02 0.0034 20.4 3.5 25 97-121 3-28 (141)
498 TIGR01529 argR_whole arginine 21.2 1.2E+02 0.0025 21.1 2.8 22 94-115 121-142 (146)
499 PLN02206 UDP-glucuronate decar 21.1 1.4E+02 0.003 24.6 3.7 33 94-127 118-150 (442)
500 PF12146 Hydrolase_4: Putative 21.1 1.4E+02 0.003 18.1 2.9 29 96-125 16-48 (79)
No 1
>PLN02160 thiosulfate sulfurtransferase
Probab=99.95 E-value=5.1e-27 Score=162.50 Aligned_cols=124 Identities=56% Similarity=0.944 Sum_probs=106.6
Q ss_pred cCCcceeecHHHHHHHHhCCCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeC
Q 031788 24 SGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQ 103 (153)
Q Consensus 24 ~~~~~~~i~~~~~~~~~~~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~ 103 (153)
..+.+..+++.++.++++++..|||||++.||..||||||..+|+|+....+...+..+++...+...++++++||+||+
T Consensus 10 ~~~~~~~i~~~e~~~~~~~~~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~~~l~~~~~~~~~~~~~~~~~~IivyC~ 89 (136)
T PLN02160 10 KAEEVVSVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVSSLLNPADDILVGCQ 89 (136)
T ss_pred CceeeeEeCHHHHHHHHhCCCEEEECCCHHHHhcCCCCCcceecccchhcCcccccCCHHHHHHHHhccCCCCcEEEECC
Confidence 34468899999999999877889999999999999999996678888655555566556676666554578999999999
Q ss_pred CCccHHHHHHHHHHCCccceeeccccHHHHHhCCCceecCCCCC
Q 031788 104 SGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREKPA 147 (153)
Q Consensus 104 ~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~~~~ 147 (153)
+|.||..++..|...||++|+.|.||+.+|.++|+|+.+...++
T Consensus 90 sG~RS~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~ 133 (136)
T PLN02160 90 SGARSLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQEEEEP 133 (136)
T ss_pred CcHHHHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCccccccCC
Confidence 99999999999999999999999999999999999999887654
No 2
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.94 E-value=5.9e-26 Score=152.09 Aligned_cols=117 Identities=44% Similarity=0.715 Sum_probs=107.9
Q ss_pred hhcCCcceeecHHHHHHHHhCC-CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh-ccCCCeEE
Q 031788 22 RSSGAEVITVDVRAAKNLLESG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLV 99 (153)
Q Consensus 22 ~~~~~~~~~i~~~~~~~~~~~~-~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iv 99 (153)
+........++.+++..+.+.+ .++||||.++||.+||+|.+ +|||+...++.+.+.+++|.+.+... .+.+++||
T Consensus 16 ~~~~~~~~sv~~~qvk~L~~~~~~~llDVRepeEfk~gh~~~s--iNiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~eiI 93 (136)
T KOG1530|consen 16 SKKASNPQSVSVEQVKNLLQHPDVVLLDVREPEEFKQGHIPAS--INIPYMSRPGAGALKNPEFLKQVGSSKPPHDKEII 93 (136)
T ss_pred hhccCCcEEEEHHHHHHHhcCCCEEEEeecCHHHhhccCCcce--EeccccccccccccCCHHHHHHhcccCCCCCCcEE
Confidence 4455778899999999999987 99999999999999999999 99999988888999999999999998 55666999
Q ss_pred EEeCCCccHHHHHHHHHHCCccceeeccccHHHHHhCCCce
Q 031788 100 VGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKV 140 (153)
Q Consensus 100 i~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~ 140 (153)
++|.+|.|+..|...|...||.||.++.|||.+|.+.+.|.
T Consensus 94 f~C~SG~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~ 134 (136)
T KOG1530|consen 94 FGCASGVRSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPK 134 (136)
T ss_pred EEeccCcchhHHHHHHHHcCcccccccCccHHHHHHccCCC
Confidence 99999999999999999999999999999999999988765
No 3
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.92 E-value=1.1e-24 Score=145.28 Aligned_cols=101 Identities=22% Similarity=0.391 Sum_probs=88.4
Q ss_pred cCCcceeecHHHHHHHHhCC--CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh-ccCCCeEEE
Q 031788 24 SGAEVITVDVRAAKNLLESG--YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVV 100 (153)
Q Consensus 24 ~~~~~~~i~~~~~~~~~~~~--~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivi 100 (153)
.......++++++.+.++++ .+|||||++.||..|||||| +|+|+. ++...+.++ .+++++||+
T Consensus 5 ~~~~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpga--inip~~-----------~l~~~~~~l~~~~~~~ivv 71 (109)
T cd01533 5 AVRHTPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGS--VSCPGA-----------ELVLRVGELAPDPRTPIVV 71 (109)
T ss_pred ccccCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCc--eeCCHH-----------HHHHHHHhcCCCCCCeEEE
Confidence 34556789999999998754 58999999999999999999 999995 666666665 456889999
Q ss_pred EeCCCccHHHHHHHHHHCCccc-eeeccccHHHHHhCC
Q 031788 101 GCQSGARSLHATADLLGAGFKH-VSNFGGGHMAWVQNG 137 (153)
Q Consensus 101 ~c~~g~~a~~~~~~L~~~G~~~-v~~l~gG~~~w~~~g 137 (153)
||++|.+|..+++.|...||+| |+.|.||+.+|..+|
T Consensus 72 ~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 72 NCAGRTRSIIGAQSLINAGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred ECCCCchHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence 9999999999999999999998 999999999999875
No 4
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.91 E-value=5.6e-24 Score=141.66 Aligned_cols=104 Identities=26% Similarity=0.377 Sum_probs=92.6
Q ss_pred CcceeecHHHHHHHHhC-CCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCC
Q 031788 26 AEVITVDVRAAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQS 104 (153)
Q Consensus 26 ~~~~~i~~~~~~~~~~~-~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~ 104 (153)
.....++++++.+.+++ +.++||||++.+|..|||||| +|+|+. +|.+.+.+ +++++++++||.+
T Consensus 2 ~~~~~is~~el~~~l~~~~~~ivDvR~~~e~~~ghi~gA--~~ip~~-----------~l~~~~~~-~~~~~~ivv~c~~ 67 (108)
T PRK00162 2 DQFECINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGA--FHLTND-----------SLGAFMRQ-ADFDTPVMVMCYH 67 (108)
T ss_pred CCccccCHHHHHHHHHcCCCEEEEcCCHHHHhcCCCCCC--eECCHH-----------HHHHHHHh-cCCCCCEEEEeCC
Confidence 35678999999999865 478999999999999999999 999985 66666655 4889999999999
Q ss_pred CccHHHHHHHHHHCCccceeeccccHHHHHhCCCceecC
Q 031788 105 GARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAR 143 (153)
Q Consensus 105 g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~ 143 (153)
|.++..++..|+..||+||+++.||+.+|.+.+.|+++.
T Consensus 68 g~~s~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~~~ 106 (108)
T PRK00162 68 GNSSQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEVAS 106 (108)
T ss_pred CCCHHHHHHHHHHCCchheEEecCCHHHHHhcCCCccCC
Confidence 999999999999999999999999999999999988754
No 5
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.91 E-value=5.9e-24 Score=139.30 Aligned_cols=98 Identities=22% Similarity=0.357 Sum_probs=85.5
Q ss_pred eeecHHHHHHHHhCCCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCCCccH
Q 031788 29 ITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARS 108 (153)
Q Consensus 29 ~~i~~~~~~~~~~~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~g~~a 108 (153)
..++++++.+.++++.+|||+|++.+|..+||||| +|+|.. ++.+.... ++++++||+||++|.++
T Consensus 2 ~~i~~~el~~~~~~~~~liDvR~~~e~~~~hi~ga--~~ip~~-----------~~~~~~~~-~~~~~~iv~~c~~g~~s 67 (99)
T cd01527 2 TTISPNDACELLAQGAVLVDIREPDEYLRERIPGA--RLVPLS-----------QLESEGLP-LVGANAIIFHCRSGMRT 67 (99)
T ss_pred CccCHHHHHHHHHCCCEEEECCCHHHHHhCcCCCC--EECChh-----------HhcccccC-CCCCCcEEEEeCCCchH
Confidence 56899999999887789999999999999999999 999985 22221112 47889999999999999
Q ss_pred HHHHHHHHHCCccceeeccccHHHHHhCCCce
Q 031788 109 LHATADLLGAGFKHVSNFGGGHMAWVQNGLKV 140 (153)
Q Consensus 109 ~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~ 140 (153)
..++..|.+.||.+++.+.||+.+|+..|+|+
T Consensus 68 ~~~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~ 99 (99)
T cd01527 68 QQNAERLAAISAGEAYVLEGGLDAWKAAGLPV 99 (99)
T ss_pred HHHHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence 99999999999999999999999999988874
No 6
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.90 E-value=6.3e-24 Score=139.76 Aligned_cols=97 Identities=26% Similarity=0.333 Sum_probs=80.4
Q ss_pred eeecHHHHHHHHhCC-CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh--ccCCCeEEEEeCCC
Q 031788 29 ITVDVRAAKNLLESG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL--CKEEDRLVVGCQSG 105 (153)
Q Consensus 29 ~~i~~~~~~~~~~~~-~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivi~c~~g 105 (153)
..++++++.++++++ .+|||||++.||..|||||| +|+|+..+. ++...+.+. .+++++||+||++|
T Consensus 2 ~~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~gA--~~ip~~~~~--------~~~~~~~~~~~~~~~~~ivvyC~~G 71 (101)
T cd01518 2 TYLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKGA--VNPDVDTFR--------EFPFWLDENLDLLKGKKVLMYCTGG 71 (101)
T ss_pred CcCCHHHHHHHHcCCCEEEEEcCChhhhhcCEeccc--cCCCcccHh--------HhHHHHHhhhhhcCCCEEEEECCCc
Confidence 357899999988754 78999999999999999999 999985221 112222222 37899999999999
Q ss_pred ccHHHHHHHHHHCCccceeeccccHHHHHh
Q 031788 106 ARSLHATADLLGAGFKHVSNFGGGHMAWVQ 135 (153)
Q Consensus 106 ~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~ 135 (153)
.|+..+++.|..+||++|+.|.||+.+|.+
T Consensus 72 ~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~ 101 (101)
T cd01518 72 IRCEKASAYLKERGFKNVYQLKGGILKYLE 101 (101)
T ss_pred hhHHHHHHHHHHhCCcceeeechhHHHHhC
Confidence 999999999999999999999999999963
No 7
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.90 E-value=1.6e-23 Score=138.68 Aligned_cols=101 Identities=28% Similarity=0.433 Sum_probs=84.4
Q ss_pred cHHHHHHHHh-C-CCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh-ccCCCeEEEEeCCCccH
Q 031788 32 DVRAAKNLLE-S-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVGCQSGARS 108 (153)
Q Consensus 32 ~~~~~~~~~~-~-~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivi~c~~g~~a 108 (153)
+++++.++++ . +.+|||+|++.+|..|||||| +|+|+..+.........+|.+.+.+. ++++++||+||++|.++
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA--~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~s 79 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGA--INIPLSSLPDALALSEEEFEKKYGFPKPSKDKELIFYCKAGVRS 79 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCc--EEechHHhhhhhCCCHHHHHHHhcccCCCCCCeEEEECCCcHHH
Confidence 5788888887 4 488999999999999999999 99998765322223334676666665 56799999999999999
Q ss_pred HHHHHHHHHCCccceeeccccHHHHH
Q 031788 109 LHATADLLGAGFKHVSNFGGGHMAWV 134 (153)
Q Consensus 109 ~~~~~~L~~~G~~~v~~l~gG~~~w~ 134 (153)
..+++.|...||+||+.|.||+.+|.
T Consensus 80 ~~~~~~l~~~G~~~v~~~~Gg~~~W~ 105 (106)
T cd01519 80 KAAAELARSLGYENVGNYPGSWLDWA 105 (106)
T ss_pred HHHHHHHHHcCCccceecCCcHHHHc
Confidence 99999999999999999999999995
No 8
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.89 E-value=7.6e-23 Score=134.29 Aligned_cols=94 Identities=24% Similarity=0.385 Sum_probs=78.0
Q ss_pred ecHHHHHHHHhCC--CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHH---HHHHHhhccCCCeEEEEeCCC
Q 031788 31 VDVRAAKNLLESG--YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDF---LKKVRSLCKEEDRLVVGCQSG 105 (153)
Q Consensus 31 i~~~~~~~~~~~~--~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ivi~c~~g 105 (153)
|+++++.++++++ .+|||||++.||..|||||| +|+|+..+.. .+ .+...+.++++++||+||.+|
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga--~~ip~~~~~~-------~~~~~~~~~~~~~~~~~~ivv~C~~G 71 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGE--NNTPYFDPYF-------DFLEIEEDILDQLPDDQEVTVICAKE 71 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCC--cccccccchH-------HHHHhhHHHHhhCCCCCeEEEEcCCC
Confidence 5788999988763 68999999999999999999 9999852210 11 122223358899999999999
Q ss_pred ccHHHHHHHHHHCCccceeeccccHHHHH
Q 031788 106 ARSLHATADLLGAGFKHVSNFGGGHMAWV 134 (153)
Q Consensus 106 ~~a~~~~~~L~~~G~~~v~~l~gG~~~w~ 134 (153)
.+|..++..|.+.||+ ++.|.||+.+|.
T Consensus 72 ~rs~~aa~~L~~~G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 72 GSSQFVAELLAERGYD-VDYLAGGMKAWS 99 (100)
T ss_pred CcHHHHHHHHHHcCce-eEEeCCcHHhhc
Confidence 9999999999999999 999999999995
No 9
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.89 E-value=1e-22 Score=132.57 Aligned_cols=90 Identities=22% Similarity=0.310 Sum_probs=77.1
Q ss_pred ecHHHHHHHHhCC---CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh-ccCCCeEEEEeCCCc
Q 031788 31 VDVRAAKNLLESG---YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVGCQSGA 106 (153)
Q Consensus 31 i~~~~~~~~~~~~---~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivi~c~~g~ 106 (153)
|+++++.++++++ .++||||++.||..|||||| +|+|.. ++.....++ ..++++||+||++|.
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga--~~ip~~-----------~l~~~~~~~~~~~~~~iv~~c~~G~ 67 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGF--RHTPGG-----------QLVQETDHFAPVRGARIVLADDDGV 67 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCc--EeCCHH-----------HHHHHHHHhcccCCCeEEEECCCCC
Confidence 5788999988753 67999999999999999999 999985 454444443 235789999999999
Q ss_pred cHHHHHHHHHHCCccceeeccccHHHHH
Q 031788 107 RSLHATADLLGAGFKHVSNFGGGHMAWV 134 (153)
Q Consensus 107 ~a~~~~~~L~~~G~~~v~~l~gG~~~w~ 134 (153)
++..++..|...||+ |+.|.||+.+|.
T Consensus 68 rs~~aa~~L~~~G~~-v~~l~GG~~~W~ 94 (95)
T cd01534 68 RADMTASWLAQMGWE-VYVLEGGLAAAL 94 (95)
T ss_pred hHHHHHHHHHHcCCE-EEEecCcHHHhc
Confidence 999999999999999 999999999996
No 10
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.89 E-value=2.5e-22 Score=142.82 Aligned_cols=115 Identities=20% Similarity=0.273 Sum_probs=88.4
Q ss_pred cCCcceeecHHHHHHHHhCC-CeEEecCChh----hhhc---------CCCCCcceeCccccccCCCCCCCChHHHHHHH
Q 031788 24 SGAEVITVDVRAAKNLLESG-YGYLDVRTAE----EFKE---------GHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVR 89 (153)
Q Consensus 24 ~~~~~~~i~~~~~~~~~~~~-~~iIDvR~~~----e~~~---------ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~ 89 (153)
.......++++++.++++++ .+|||||+.. +|.. +||||| +|+|+...........+.|.+.+.
T Consensus 31 ~~~~~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGA--v~ip~~~~~~l~~~~~~~~~~~l~ 108 (162)
T TIGR03865 31 TLKGARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGS--LWLPNTGYGNLAPAWQAYFRRGLE 108 (162)
T ss_pred ccCCccccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCCCc--EEecccCCCCCCCchhHHHHHHHH
Confidence 34456889999999999764 8899999865 4544 499999 988853211111111123556665
Q ss_pred hh--ccCCCeEEEEeCCCc-cHHHHHHHHHHCCccceeeccccHHHHHhCCCce
Q 031788 90 SL--CKEEDRLVVGCQSGA-RSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKV 140 (153)
Q Consensus 90 ~~--~~~~~~ivi~c~~g~-~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~ 140 (153)
+. .+++++||+||++|. +|..+++.|..+||+||++|+||+.+|+.+|+|+
T Consensus 109 ~~~~~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv 162 (162)
T TIGR03865 109 RATGGDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL 162 (162)
T ss_pred HhcCCCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence 54 368999999999886 8999999999999999999999999999999985
No 11
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.89 E-value=2.2e-22 Score=134.45 Aligned_cols=99 Identities=27% Similarity=0.456 Sum_probs=84.2
Q ss_pred ceeecHHHHHHHHhCC---CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCC
Q 031788 28 VITVDVRAAKNLLESG---YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQS 104 (153)
Q Consensus 28 ~~~i~~~~~~~~~~~~---~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~ 104 (153)
...++++++.+.++.+ .+|||||++.+|..|||||| +|+|.. .+.....+.++++++||+||++
T Consensus 7 ~~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA--~~ip~~-----------~l~~~~~~~i~~~~~vvvyc~~ 73 (110)
T cd01521 7 AFETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGA--INLPHR-----------EICENATAKLDKEKLFVVYCDG 73 (110)
T ss_pred eeecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCC--EeCCHH-----------HhhhHhhhcCCCCCeEEEEECC
Confidence 4678999999998753 78999999999999999999 999985 3332222336889999999997
Q ss_pred Cc--cHHHHHHHHHHCCccceeeccccHHHHHhCCCce
Q 031788 105 GA--RSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKV 140 (153)
Q Consensus 105 g~--~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~ 140 (153)
|. ++..+++.|...||+ +++|.||+.+|..+|+|+
T Consensus 74 g~~~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g~~~ 110 (110)
T cd01521 74 PGCNGATKAALKLAELGFP-VKEMIGGLDWWKREGYAT 110 (110)
T ss_pred CCCchHHHHHHHHHHcCCe-EEEecCCHHHHHHCCCCC
Confidence 74 899999999999996 999999999999999874
No 12
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.88 E-value=2.4e-22 Score=132.18 Aligned_cols=93 Identities=27% Similarity=0.473 Sum_probs=80.0
Q ss_pred ecHHHHHHHHhCC---CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh--ccCCCeEEEEeCCC
Q 031788 31 VDVRAAKNLLESG---YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL--CKEEDRLVVGCQSG 105 (153)
Q Consensus 31 i~~~~~~~~~~~~---~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivi~c~~g 105 (153)
|+++++.++++.+ .++||||++.||..+||||| +|+|+. ++.+.+..+ .++++++|+||++|
T Consensus 2 i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga--~~ip~~-----------~~~~~~~~~~~~~~~~~vv~~c~~g 68 (101)
T cd01528 2 ISVAELAEWLADEREEPVLIDVREPEELEIAFLPGF--LHLPMS-----------EIPERSKELDSDNPDKDIVVLCHHG 68 (101)
T ss_pred CCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCC--EecCHH-----------HHHHHHHHhcccCCCCeEEEEeCCC
Confidence 6889999998754 78999999999999999999 999985 444433333 14689999999999
Q ss_pred ccHHHHHHHHHHCCccceeeccccHHHHHhC
Q 031788 106 ARSLHATADLLGAGFKHVSNFGGGHMAWVQN 136 (153)
Q Consensus 106 ~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~ 136 (153)
.+|..++..|.+.||+++++|.||+.+|.+.
T Consensus 69 ~rs~~~~~~l~~~G~~~v~~l~GG~~~w~~~ 99 (101)
T cd01528 69 GRSMQVAQWLLRQGFENVYNLQGGIDAWSLE 99 (101)
T ss_pred chHHHHHHHHHHcCCccEEEecCCHHHHhhh
Confidence 9999999999999999999999999999753
No 13
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.88 E-value=2.6e-22 Score=129.41 Aligned_cols=89 Identities=30% Similarity=0.545 Sum_probs=79.2
Q ss_pred ecHHHHHHHHhCCCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCCCccHHH
Q 031788 31 VDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLH 110 (153)
Q Consensus 31 i~~~~~~~~~~~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~g~~a~~ 110 (153)
++++++.++++++.++||+|++.+|..|||||| +|+|.. ++...+.. ++++++||+||++|.++..
T Consensus 1 ~~~~e~~~~~~~~~~iiD~R~~~~~~~~hipgA--~~ip~~-----------~~~~~~~~-~~~~~~vvl~c~~g~~a~~ 66 (90)
T cd01524 1 VQWHELDNYRADGVTLIDVRTPQEFEKGHIKGA--INIPLD-----------ELRDRLNE-LPKDKEIIVYCAVGLRGYI 66 (90)
T ss_pred CCHHHHHHHhcCCCEEEECCCHHHHhcCCCCCC--EeCCHH-----------HHHHHHHh-cCCCCcEEEEcCCChhHHH
Confidence 478899998876788999999999999999999 999985 55555544 4788999999999999999
Q ss_pred HHHHHHHCCccceeeccccHHHHH
Q 031788 111 ATADLLGAGFKHVSNFGGGHMAWV 134 (153)
Q Consensus 111 ~~~~L~~~G~~~v~~l~gG~~~w~ 134 (153)
+++.|+..|| ++++|+||+.+|+
T Consensus 67 ~a~~L~~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 67 AARILTQNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred HHHHHHHCCC-CEEEecCCHHHhc
Confidence 9999999999 8999999999995
No 14
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.88 E-value=3.8e-22 Score=136.74 Aligned_cols=102 Identities=24% Similarity=0.364 Sum_probs=79.6
Q ss_pred ecHHHHHHHHhCCCeEEecCChhhhhcCCCCCcceeCccccccCCCC----C---------------CCCh---HHHHHH
Q 031788 31 VDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEG----R---------------VKNP---DFLKKV 88 (153)
Q Consensus 31 i~~~~~~~~~~~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~----~---------------~~~~---~~~~~~ 88 (153)
|+++++.++++++.+|||||++.||..|||||| +|||+....... . +..+ ++.+.+
T Consensus 1 ~s~~el~~~l~~~~~iiDvR~~~e~~~ghIpgA--inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (128)
T cd01520 1 ITAEDLLALRKADGPLIDVRSPKEFFEGHLPGA--INLPLLDDEERALVGTLYKQQGREAAIELGLELVSGKLKRILNEA 78 (128)
T ss_pred CCHHHHHHHHhcCCEEEECCCHHHhccCcCCCc--EEccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhhHHHHHHHH
Confidence 688999999987789999999999999999999 999985321000 0 0001 222223
Q ss_pred Hh-hccCCCeEEEEeC-CCccHHHHHHHHHHCCccceeeccccHHHHHh
Q 031788 89 RS-LCKEEDRLVVGCQ-SGARSLHATADLLGAGFKHVSNFGGGHMAWVQ 135 (153)
Q Consensus 89 ~~-~~~~~~~ivi~c~-~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~ 135 (153)
.+ -++++++||+||+ +|.+|.++++.|+.+|| +|+.|+||+.+|+.
T Consensus 79 ~~~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 79 WEARLERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred HHhccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence 21 2689999999997 68899999999999999 59999999999975
No 15
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.88 E-value=5.8e-22 Score=128.84 Aligned_cols=91 Identities=25% Similarity=0.404 Sum_probs=80.8
Q ss_pred eecHHHHHHHHhC--CCeEEecCChhhhhc--CCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCCC
Q 031788 30 TVDVRAAKNLLES--GYGYLDVRTAEEFKE--GHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSG 105 (153)
Q Consensus 30 ~i~~~~~~~~~~~--~~~iIDvR~~~e~~~--ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~g 105 (153)
.++++++.+++++ +.++||||++.+|.. |||||| +|+|+. ++.+.+.. ++++++||+||++|
T Consensus 1 ~i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga--~~ip~~-----------~~~~~~~~-~~~~~~ivv~c~~g 66 (96)
T cd01444 1 RISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGA--IHLDED-----------SLDDWLGD-LDRDRPVVVYCYHG 66 (96)
T ss_pred CcCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCC--eeCCHH-----------HHHHHHhh-cCCCCCEEEEeCCC
Confidence 3688999998876 379999999999999 999999 999995 55555544 48899999999999
Q ss_pred ccHHHHHHHHHHCCccceeeccccHHHHH
Q 031788 106 ARSLHATADLLGAGFKHVSNFGGGHMAWV 134 (153)
Q Consensus 106 ~~a~~~~~~L~~~G~~~v~~l~gG~~~w~ 134 (153)
.++..+++.|+..||++|+++.||+.+|.
T Consensus 67 ~~s~~a~~~l~~~G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 67 NSSAQLAQALREAGFTDVRSLAGGFEAWR 95 (96)
T ss_pred ChHHHHHHHHHHcCCceEEEcCCCHHHhc
Confidence 99999999999999999999999999995
No 16
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.88 E-value=4.1e-22 Score=135.46 Aligned_cols=108 Identities=24% Similarity=0.308 Sum_probs=85.1
Q ss_pred CcceeecHHHHHHHHhC--CCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHH--HHhhccCCCeEEEE
Q 031788 26 AEVITVDVRAAKNLLES--GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKK--VRSLCKEEDRLVVG 101 (153)
Q Consensus 26 ~~~~~i~~~~~~~~~~~--~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ivi~ 101 (153)
.....++++++.+++++ +.+|||||++.||..|||||| +|+|+..+.... .++... ....++++++|++|
T Consensus 5 ~~~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpga--i~ip~~~~~~~~----~~~~~~~~~~~~~~~~~~ivv~ 78 (122)
T cd01526 5 SPEERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEA--INIPLSELLSKA----AELKSLQELPLDNDKDSPIYVV 78 (122)
T ss_pred CcccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCC--eEccHHHHhhhh----hhhhhhhhcccccCCCCcEEEE
Confidence 34568999999998875 368999999999999999999 999986332100 011110 01125789999999
Q ss_pred eCCCccHHHHHHHHHHCCc-cceeeccccHHHHHhCCCc
Q 031788 102 CQSGARSLHATADLLGAGF-KHVSNFGGGHMAWVQNGLK 139 (153)
Q Consensus 102 c~~g~~a~~~~~~L~~~G~-~~v~~l~gG~~~w~~~g~~ 139 (153)
|++|.++..+++.|++.|| ++|+.+.||+.+|..+..+
T Consensus 79 C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~ 117 (122)
T cd01526 79 CRRGNDSQTAVRKLKELGLERFVRDIIGGLKAWADKVDP 117 (122)
T ss_pred CCCCCcHHHHHHHHHHcCCccceeeecchHHHHHHHhCc
Confidence 9999999999999999999 7999999999999987443
No 17
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.87 E-value=5.7e-22 Score=130.34 Aligned_cols=101 Identities=30% Similarity=0.435 Sum_probs=78.6
Q ss_pred ecHHHHHHHHhC-CCeEEecCChhhh-hcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCCCccH
Q 031788 31 VDVRAAKNLLES-GYGYLDVRTAEEF-KEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARS 108 (153)
Q Consensus 31 i~~~~~~~~~~~-~~~iIDvR~~~e~-~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~g~~a 108 (153)
++++++.+.+++ +.+|||||++.+| ..|||||| +|+|+..+........ .+ ....++++++||+||++|.++
T Consensus 1 is~~el~~~~~~~~~~iiDvR~~~~~~~~ghIpga--~~ip~~~~~~~~~~~~-~~---~~~~~~~~~~ivv~c~~g~~s 74 (103)
T cd01447 1 LSPEDARALLGSPGVLLVDVRDPRELERTGMIPGA--FHAPRGMLEFWADPDS-PY---HKPAFAEDKPFVFYCASGWRS 74 (103)
T ss_pred CCHHHHHHHHhCCCeEEEECCCHHHHHhcCCCCCc--EEcccchhhhhcCccc-cc---cccCCCCCCeEEEEcCCCCcH
Confidence 578899888875 4789999999998 56999999 9999853311000000 00 011257899999999999999
Q ss_pred HHHHHHHHHCCccceeeccccHHHHHhCC
Q 031788 109 LHATADLLGAGFKHVSNFGGGHMAWVQNG 137 (153)
Q Consensus 109 ~~~~~~L~~~G~~~v~~l~gG~~~w~~~g 137 (153)
..+++.|...||++|+.|.||+.+|...|
T Consensus 75 ~~~~~~l~~~G~~~v~~l~Gg~~~w~~~g 103 (103)
T cd01447 75 ALAGKTLQDMGLKPVYNIEGGFKDWKEAG 103 (103)
T ss_pred HHHHHHHHHcChHHhEeecCcHHHHhhcC
Confidence 99999999999999999999999998654
No 18
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.87 E-value=5e-22 Score=134.20 Aligned_cols=102 Identities=27% Similarity=0.379 Sum_probs=85.9
Q ss_pred ecHHHHHHHHhC--CCeEEecCChhhhh-cCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCCCcc
Q 031788 31 VDVRAAKNLLES--GYGYLDVRTAEEFK-EGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGAR 107 (153)
Q Consensus 31 i~~~~~~~~~~~--~~~iIDvR~~~e~~-~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~g~~ 107 (153)
|+++++.+++++ +.++||||++.||. .|||||| +|+|...+... .....+...+.+..+++++||+||++|.+
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA--~~ip~~~~~~~--~~~~~~~~~l~~~~~~~~~ivv~C~~G~r 76 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDA--VHVAWQVYPDM--EINPNFLAELEEKVGKDRPVLLLCRSGNR 76 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCc--eecchhhcccc--ccCHHHHHHHHhhCCCCCeEEEEcCCCcc
Confidence 578999999976 47899999999999 9999999 99998644211 11235666666656789999999999999
Q ss_pred HHHHHHHHHHCCccceeeccccHHHHHhC
Q 031788 108 SLHATADLLGAGFKHVSNFGGGHMAWVQN 136 (153)
Q Consensus 108 a~~~~~~L~~~G~~~v~~l~gG~~~w~~~ 136 (153)
|..+++.|...||+|++.+.||+++|+..
T Consensus 77 s~~aa~~L~~~G~~~v~~l~gG~~~~~~~ 105 (117)
T cd01522 77 SIAAAEAAAQAGFTNVYNVLEGFEGDLDA 105 (117)
T ss_pred HHHHHHHHHHCCCCeEEECcCceecCCCC
Confidence 99999999999999999999999999765
No 19
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.87 E-value=1.2e-21 Score=132.81 Aligned_cols=105 Identities=25% Similarity=0.278 Sum_probs=87.2
Q ss_pred ecHHHHHHHHhC-CCeEEecCCh-------hhhhcCCCCCcceeCccccccCC-----CCCCCC-hHHHHHHHhh-ccCC
Q 031788 31 VDVRAAKNLLES-GYGYLDVRTA-------EEFKEGHVDAAKIFNIPYMFNTP-----EGRVKN-PDFLKKVRSL-CKEE 95 (153)
Q Consensus 31 i~~~~~~~~~~~-~~~iIDvR~~-------~e~~~ghi~ga~~i~ip~~~~~~-----~~~~~~-~~~~~~~~~~-~~~~ 95 (153)
++++++.+++++ +.+|||+|++ .+|..|||||| +|+|+..+.. .+.+.. .++.+.+... ++++
T Consensus 2 i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (122)
T cd01448 2 VSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGA--VFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGISND 79 (122)
T ss_pred cCHHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCCCC--EEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCCCC
Confidence 688999999876 4789999999 99999999999 9999865522 223333 3566666554 7889
Q ss_pred CeEEEEeCC-CccHHHHHHHHHHCCccceeeccccHHHHHhCC
Q 031788 96 DRLVVGCQS-GARSLHATADLLGAGFKHVSNFGGGHMAWVQNG 137 (153)
Q Consensus 96 ~~ivi~c~~-g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g 137 (153)
++||+||++ +.++..+++.|+..||++|++|.||+.+|.+.|
T Consensus 80 ~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g 122 (122)
T cd01448 80 DTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAEG 122 (122)
T ss_pred CEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence 999999998 589999999999999999999999999998764
No 20
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.86 E-value=2.3e-21 Score=135.53 Aligned_cols=98 Identities=26% Similarity=0.408 Sum_probs=84.3
Q ss_pred HHHHHhCC--CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCCCccHHHHHH
Q 031788 36 AKNLLESG--YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATA 113 (153)
Q Consensus 36 ~~~~~~~~--~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~g~~a~~~~~ 113 (153)
+.+++.++ .+|||||++.+|..|||||| +++|.. .+.+.+.++ +++++||+||.+|.+|..+++
T Consensus 2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpgA--i~~~~~-----------~l~~~l~~l-~~~~~vVv~c~~g~~a~~aa~ 67 (145)
T cd01535 2 LAAWLGEGGQTAVVDVTASANYVKRHIPGA--WWVLRA-----------QLAQALEKL-PAAERYVLTCGSSLLARFAAA 67 (145)
T ss_pred hHHHHhCCCCeEEEECCCHHHHHcCCCCCc--eeCCHH-----------HHHHHHHhc-CCCCCEEEEeCCChHHHHHHH
Confidence 34555443 68999999999999999999 998874 666666664 678999999999999999999
Q ss_pred HHHHCCccceeeccccHHHHHhCCCceecCCCCC
Q 031788 114 DLLGAGFKHVSNFGGGHMAWVQNGLKVKAREKPA 147 (153)
Q Consensus 114 ~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~~~~ 147 (153)
.|...||.+|++|.||+.+|...|+|++++.+++
T Consensus 68 ~L~~~G~~~v~~L~GG~~aW~~~g~pl~~~~~~~ 101 (145)
T cd01535 68 DLAALTVKPVFVLEGGTAAWIAAGLPVESGETRL 101 (145)
T ss_pred HHHHcCCcCeEEecCcHHHHHHCCCCcccCCCCC
Confidence 9999999999999999999999999999876544
No 21
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.86 E-value=1.3e-21 Score=131.79 Aligned_cols=103 Identities=27% Similarity=0.465 Sum_probs=84.0
Q ss_pred ecHHHHHHHHhCC-CeEEecCChhhhhc-----------CCCCCcceeCccccccCC-CCCCCCh-HHHHHHHhh-ccCC
Q 031788 31 VDVRAAKNLLESG-YGYLDVRTAEEFKE-----------GHVDAAKIFNIPYMFNTP-EGRVKNP-DFLKKVRSL-CKEE 95 (153)
Q Consensus 31 i~~~~~~~~~~~~-~~iIDvR~~~e~~~-----------ghi~ga~~i~ip~~~~~~-~~~~~~~-~~~~~~~~~-~~~~ 95 (153)
++++++.++++++ .+|||||++.+|.. |||||| +|+|+..+.. ...++.+ ++...+... ++++
T Consensus 1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (118)
T cd01449 1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGA--VNIPWTSLLDEDGTFKSPEELRALFAALGITPD 78 (118)
T ss_pred CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCC--cccChHHhcCCCCCcCCHHHHHHHHHHcCCCCC
Confidence 4688898888754 89999999999987 999999 9999875532 1233333 444555554 6789
Q ss_pred CeEEEEeCCCccHHHHHHHHHHCCccceeeccccHHHHHh
Q 031788 96 DRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQ 135 (153)
Q Consensus 96 ~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~ 135 (153)
++||+||++|.+|.++++.|+.+||++++.|+||+.+|.+
T Consensus 79 ~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 118 (118)
T cd01449 79 KPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWGS 118 (118)
T ss_pred CCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhcC
Confidence 9999999999999999999999999999999999999963
No 22
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.86 E-value=1.7e-21 Score=128.70 Aligned_cols=100 Identities=22% Similarity=0.369 Sum_probs=77.5
Q ss_pred ecHHHHHHHHhC---CCeEEecCChhhhhcCCCCCcceeCccccccCC-CCCCCChHHHHHHHhhccCCCeEEEEeCCCc
Q 031788 31 VDVRAAKNLLES---GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTP-EGRVKNPDFLKKVRSLCKEEDRLVVGCQSGA 106 (153)
Q Consensus 31 i~~~~~~~~~~~---~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ivi~c~~g~ 106 (153)
|+++++.+++++ +.+|||||++.+|..|||||| +|+|+..... ...+..-...+++.. .++++||+||.+|.
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA--~~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~vv~~c~~g~ 76 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGS--INIPFSSVFLKEGELEQLPTVPRLEN--YKGKIIVIVSHSHK 76 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCC--EeCCHHHhcccccccccccchHHHHh--hcCCeEEEEeCCCc
Confidence 688999999875 368999999999999999999 9999864311 011110000122222 35889999999999
Q ss_pred cHHHHHHHHHHCCccceeeccccHHHHH
Q 031788 107 RSLHATADLLGAGFKHVSNFGGGHMAWV 134 (153)
Q Consensus 107 ~a~~~~~~L~~~G~~~v~~l~gG~~~w~ 134 (153)
++..+++.|...||++|++|.||+.+|+
T Consensus 77 ~s~~~a~~L~~~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 77 HAALFAAFLVKCGVPRVCILDGGINALK 104 (105)
T ss_pred cHHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence 9999999999999999999999999995
No 23
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.86 E-value=2.8e-21 Score=153.90 Aligned_cols=105 Identities=28% Similarity=0.447 Sum_probs=93.7
Q ss_pred ceeecHHHHHHHHhCCCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh-ccCCCeEEEEeCCCc
Q 031788 28 VITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVGCQSGA 106 (153)
Q Consensus 28 ~~~i~~~~~~~~~~~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivi~c~~g~ 106 (153)
+..++++++.++++++.++||||++.||..|||||| +|+|+. ++.+.+.+. .+++++||+||++|.
T Consensus 2 v~~is~~el~~~l~~~~~ivDvR~~~e~~~ghIpgA--i~ip~~-----------~l~~~~~~~~~~~~~~IvvyC~~G~ 68 (376)
T PRK08762 2 IREISPAEARARAAQGAVLIDVREAHERASGQAEGA--LRIPRG-----------FLELRIETHLPDRDREIVLICASGT 68 (376)
T ss_pred CceeCHHHHHHHHhCCCEEEECCCHHHHhCCcCCCC--EECCHH-----------HHHHHHhhhcCCCCCeEEEEcCCCc
Confidence 567999999999988889999999999999999999 999985 555555554 478999999999999
Q ss_pred cHHHHHHHHHHCCccceeeccccHHHHHhCCCceecCCC
Q 031788 107 RSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREK 145 (153)
Q Consensus 107 ~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~~ 145 (153)
+|..+++.|+..||+||++|+||+.+|++.|+|+++...
T Consensus 69 rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~ 107 (376)
T PRK08762 69 RSAHAAATLRELGYTRVASVAGGFSAWKDAGLPLERPRL 107 (376)
T ss_pred HHHHHHHHHHHcCCCceEeecCcHHHHHhcCCccccccC
Confidence 999999999999999999999999999999999886643
No 24
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.86 E-value=2.9e-21 Score=125.11 Aligned_cols=95 Identities=34% Similarity=0.501 Sum_probs=76.6
Q ss_pred CCeEEecCChhhhhcCCCCCcceeCccccccCCC-CCCCChHHHHHHHhh-ccCCCeEEEEeCCCccHHHHHHHHHHCCc
Q 031788 43 GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPE-GRVKNPDFLKKVRSL-CKEEDRLVVGCQSGARSLHATADLLGAGF 120 (153)
Q Consensus 43 ~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~ivi~c~~g~~a~~~~~~L~~~G~ 120 (153)
+.+|||||++.+|..+||||| +|+|....... ......++....... .+++++||+||.+|.++..+++.|...||
T Consensus 4 ~~~ivDvR~~~e~~~~hi~ga--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~l~~~G~ 81 (100)
T smart00450 4 KVVLLDVRSPEEYEGGHIPGA--VNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVVVYCRSGNRSAKAAWLLRELGF 81 (100)
T ss_pred CEEEEECCCHHHhccCCCCCc--eeCCHHHhccCCCCcCHHHHHHHHHHcCCCCCCeEEEEeCCCcHHHHHHHHHHHcCC
Confidence 478999999999999999999 99998655322 111111333333333 68899999999999999999999999999
Q ss_pred cceeeccccHHHHHhCCCc
Q 031788 121 KHVSNFGGGHMAWVQNGLK 139 (153)
Q Consensus 121 ~~v~~l~gG~~~w~~~g~~ 139 (153)
++|++|.||+.+|.+.+.|
T Consensus 82 ~~v~~l~GG~~~w~~~~~~ 100 (100)
T smart00450 82 KNVYLLDGGYKEWSAAGPP 100 (100)
T ss_pred CceEEecCCHHHHHhcCCC
Confidence 9999999999999988754
No 25
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.86 E-value=3.5e-21 Score=130.81 Aligned_cols=94 Identities=19% Similarity=0.302 Sum_probs=78.8
Q ss_pred eeecHHHHHHHHhC-------CCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHh----h-ccCCC
Q 031788 29 ITVDVRAAKNLLES-------GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRS----L-CKEED 96 (153)
Q Consensus 29 ~~i~~~~~~~~~~~-------~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~----~-~~~~~ 96 (153)
..|+++++.+++++ +.+|||||++.||..|||||| +|+|.. .++.+.+.. . +++++
T Consensus 2 ~~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA--~~ip~~----------~~l~~~~~~~~~~~~~~~~~ 69 (121)
T cd01530 2 KRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGA--VNLSTK----------DELEEFFLDKPGVASKKKRR 69 (121)
T ss_pred CccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCC--EeCCcH----------HHHHHHHHHhhcccccCCCC
Confidence 46899999999865 368999999999999999999 999983 123333322 1 57899
Q ss_pred eEEEEeC-CCccHHHHHHHHHHC------------CccceeeccccHHHHH
Q 031788 97 RLVVGCQ-SGARSLHATADLLGA------------GFKHVSNFGGGHMAWV 134 (153)
Q Consensus 97 ~ivi~c~-~g~~a~~~~~~L~~~------------G~~~v~~l~gG~~~w~ 134 (153)
+||+||+ +|.||..+++.|+.. ||.+|++|.||+.+|.
T Consensus 70 ~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 70 VLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred EEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 9999997 999999999999985 9999999999999984
No 26
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.85 E-value=4.9e-21 Score=127.27 Aligned_cols=102 Identities=32% Similarity=0.508 Sum_probs=78.2
Q ss_pred cHHHHHHHHhC-CCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCCh-HHHHHHHhh---ccCCCeEEEEeCCCc
Q 031788 32 DVRAAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNP-DFLKKVRSL---CKEEDRLVVGCQSGA 106 (153)
Q Consensus 32 ~~~~~~~~~~~-~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~ivi~c~~g~ 106 (153)
|++|+.+.+++ +.+|||||++.+|..|||||| +|+|.....+....... .+....... ++++++||+||.+|.
T Consensus 1 s~~el~~~l~~~~~~liD~R~~~~~~~~hI~ga--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~ 78 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVRSPEEYERGHIPGA--VNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGW 78 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEESSHHHHHHSBETTE--EEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSC
T ss_pred CHHHHHhhhhCCCeEEEEeCCHHHHHcCCCCCC--ccccccccccccccccccccccccccccccccccccceeeeeccc
Confidence 68899999843 489999999999999999999 99999655222222211 222222222 688899999999888
Q ss_pred cHHHHHHH-----HHHCCccceeeccccHHHHHh
Q 031788 107 RSLHATAD-----LLGAGFKHVSNFGGGHMAWVQ 135 (153)
Q Consensus 107 ~a~~~~~~-----L~~~G~~~v~~l~gG~~~w~~ 135 (153)
++..++.. |...||++|++|.||+.+|.+
T Consensus 79 ~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~ 112 (113)
T PF00581_consen 79 RSGSAAAARVAWILKKLGFKNVYILDGGFEAWKA 112 (113)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHH
T ss_pred ccchhHHHHHHHHHHHcCCCCEEEecChHHHHhc
Confidence 87777666 889999999999999999986
No 27
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.84 E-value=2.7e-20 Score=143.09 Aligned_cols=116 Identities=20% Similarity=0.232 Sum_probs=94.9
Q ss_pred eeecHHHHHHHHhCC-CeEEecCC----------hhhhhcCCCCCcceeCccccccCC-C----CCCC-ChHHHHHHHhh
Q 031788 29 ITVDVRAAKNLLESG-YGYLDVRT----------AEEFKEGHVDAAKIFNIPYMFNTP-E----GRVK-NPDFLKKVRSL 91 (153)
Q Consensus 29 ~~i~~~~~~~~~~~~-~~iIDvR~----------~~e~~~ghi~ga~~i~ip~~~~~~-~----~~~~-~~~~~~~~~~~ 91 (153)
..++++++.+.++++ .+|||+|+ +.+|..|||||| +|+|+..+.. . ..++ ..+|.+.+.++
T Consensus 5 ~lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (281)
T PRK11493 5 WFVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGA--VFFDIEALSDHTSPLPHMMPRPETFAVAMREL 82 (281)
T ss_pred cccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCC--EEcCHHHhcCCCCCCCCCCCCHHHHHHHHHHc
Confidence 568999999999764 88999996 788999999999 9998765421 1 1222 23666777776
Q ss_pred -ccCCCeEEEEeCCCcc-HHHHHHHHHHCCccceeeccccHHHHHhCCCceecCCCC
Q 031788 92 -CKEEDRLVVGCQSGAR-SLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREKP 146 (153)
Q Consensus 92 -~~~~~~ivi~c~~g~~-a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~~~ 146 (153)
++++++||+||.++.+ +.++++.|...||++|++|+||+.+|.++|+|+++..+.
T Consensus 83 Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~ 139 (281)
T PRK11493 83 GVNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEGAVE 139 (281)
T ss_pred CCCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCCCCC
Confidence 8999999999997764 678889999999999999999999999999999877543
No 28
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.83 E-value=8e-21 Score=123.82 Aligned_cols=85 Identities=29% Similarity=0.455 Sum_probs=69.4
Q ss_pred CCCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCCCccHHHHHHHHHHCCcc
Q 031788 42 SGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFK 121 (153)
Q Consensus 42 ~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~ 121 (153)
.+.+|||||++.+|..|||||| +|+|+..+.+ ..+..+.+.. .+++++||+||++|.++..+++.|+..||+
T Consensus 11 ~~~~iiDvR~~~~~~~~hIpgA--~~ip~~~~~~-----~~~~~~~~~~-~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~ 82 (96)
T cd01529 11 PGTALLDVRAEDEYAAGHLPGK--RSIPGAALVL-----RSQELQALEA-PGRATRYVLTCDGSLLARFAAQELLALGGK 82 (96)
T ss_pred CCeEEEeCCCHHHHcCCCCCCc--EeCCHHHhcC-----CHHHHHHhhc-CCCCCCEEEEeCChHHHHHHHHHHHHcCCC
Confidence 3478999999999999999999 9999854321 1122222222 478899999999999999999999999999
Q ss_pred ceeeccccHHHHH
Q 031788 122 HVSNFGGGHMAWV 134 (153)
Q Consensus 122 ~v~~l~gG~~~w~ 134 (153)
||++|.||+.+|.
T Consensus 83 ~v~~l~GG~~~W~ 95 (96)
T cd01529 83 PVALLDGGTSAWV 95 (96)
T ss_pred CEEEeCCCHHHhc
Confidence 9999999999996
No 29
>PRK01415 hypothetical protein; Validated
Probab=99.83 E-value=3.4e-20 Score=139.19 Aligned_cols=100 Identities=17% Similarity=0.264 Sum_probs=84.3
Q ss_pred cceeecHHHHHHHHhC-CCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh--ccCCCeEEEEeC
Q 031788 27 EVITVDVRAAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL--CKEEDRLVVGCQ 103 (153)
Q Consensus 27 ~~~~i~~~~~~~~~~~-~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivi~c~ 103 (153)
....|++.++.+++++ +.++||||++.||..|||||| +|+|...+. +|.++..+. ++++++|++||.
T Consensus 110 ~g~~i~p~e~~~ll~~~~~vvIDVRn~~E~~~Ghi~gA--inip~~~f~--------e~~~~~~~~~~~~k~k~Iv~yCt 179 (247)
T PRK01415 110 KGEYIEPKDWDEFITKQDVIVIDTRNDYEVEVGTFKSA--INPNTKTFK--------QFPAWVQQNQELLKGKKIAMVCT 179 (247)
T ss_pred CccccCHHHHHHHHhCCCcEEEECCCHHHHhcCCcCCC--CCCChHHHh--------hhHHHHhhhhhhcCCCeEEEECC
Confidence 4567999999999985 488999999999999999999 999985221 222222211 578999999999
Q ss_pred CCccHHHHHHHHHHCCccceeeccccHHHHHhC
Q 031788 104 SGARSLHATADLLGAGFKHVSNFGGGHMAWVQN 136 (153)
Q Consensus 104 ~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~ 136 (153)
+|.||..++..|.+.||++|+.|.||+.+|.+.
T Consensus 180 gGiRs~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~ 212 (247)
T PRK01415 180 GGIRCEKSTSLLKSIGYDEVYHLKGGILQYLED 212 (247)
T ss_pred CChHHHHHHHHHHHcCCCcEEEechHHHHHHHh
Confidence 999999999999999999999999999999875
No 30
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.83 E-value=3.6e-20 Score=119.95 Aligned_cols=81 Identities=22% Similarity=0.345 Sum_probs=67.3
Q ss_pred CCCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHH-HHHhhccCCCeEEEEeCCCcc--HHHHHHHHHHC
Q 031788 42 SGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLK-KVRSLCKEEDRLVVGCQSGAR--SLHATADLLGA 118 (153)
Q Consensus 42 ~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ivi~c~~g~~--a~~~~~~L~~~ 118 (153)
++.+|||||++.+|..+||||| +|+|.. ++.. ......+++++||+||.+|.+ +..+++.|.+.
T Consensus 9 ~~~~liDvR~~~e~~~~hi~ga--~~ip~~-----------~~~~~~~~~~~~~~~~ivl~c~~G~~~~s~~aa~~L~~~ 75 (92)
T cd01532 9 EEIALIDVREEDPFAQSHPLWA--ANLPLS-----------RLELDAWVRIPRRDTPIVVYGEGGGEDLAPRAARRLSEL 75 (92)
T ss_pred CCeEEEECCCHHHHhhCCcccC--eeCCHH-----------HHHhhhHhhCCCCCCeEEEEeCCCCchHHHHHHHHHHHc
Confidence 3478999999999999999999 999985 3322 222223458899999999876 68999999999
Q ss_pred CccceeeccccHHHHHh
Q 031788 119 GFKHVSNFGGGHMAWVQ 135 (153)
Q Consensus 119 G~~~v~~l~gG~~~w~~ 135 (153)
||++|+++.||+.+|.+
T Consensus 76 G~~~v~~l~GG~~~W~~ 92 (92)
T cd01532 76 GYTDVALLEGGLQGWRA 92 (92)
T ss_pred CccCEEEccCCHHHHcC
Confidence 99999999999999963
No 31
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.82 E-value=8.8e-20 Score=152.54 Aligned_cols=115 Identities=16% Similarity=0.201 Sum_probs=96.9
Q ss_pred eeecHHHHHHHHhCC-CeEEecCChhhhhcCCCCCcceeCcccccc-----CCCCCCCC-hHHHHHHHhh-ccCCCeEEE
Q 031788 29 ITVDVRAAKNLLESG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFN-----TPEGRVKN-PDFLKKVRSL-CKEEDRLVV 100 (153)
Q Consensus 29 ~~i~~~~~~~~~~~~-~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~-----~~~~~~~~-~~~~~~~~~~-~~~~~~ivi 100 (153)
..|+++++.++++++ .+|||||++.+|..|||||| +|+|+... ...+.++. .+|.+.+.++ ++++++||+
T Consensus 9 ~lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGA--v~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI~~d~~VVv 86 (610)
T PRK09629 9 LVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGA--RFVDPKRTQLGKPPAPGLLPDTADLEQLFGELGHNPDAVYVV 86 (610)
T ss_pred ceecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCc--EEcChhHhhccCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEE
Confidence 579999999999864 88999999999999999999 88886432 11233443 3677777777 899999999
Q ss_pred EeCCC-ccHHHHHHHHHHCCccceeeccccHHHHHhCCCceecCCC
Q 031788 101 GCQSG-ARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREK 145 (153)
Q Consensus 101 ~c~~g-~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~~ 145 (153)
||+++ .++.++++.|+.+|+++|++|+||+.+|+.+|+|+++..+
T Consensus 87 Yd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~~~ 132 (610)
T PRK09629 87 YDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTDVP 132 (610)
T ss_pred ECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccccCCC
Confidence 99976 4788999999999999999999999999999999987754
No 32
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.82 E-value=8.4e-20 Score=126.67 Aligned_cols=102 Identities=21% Similarity=0.325 Sum_probs=83.2
Q ss_pred ecHHHHHHHHh----C-CCeEEecCCh--------hhhhc------------CCCCCcceeCcccccc-CCCC----CCC
Q 031788 31 VDVRAAKNLLE----S-GYGYLDVRTA--------EEFKE------------GHVDAAKIFNIPYMFN-TPEG----RVK 80 (153)
Q Consensus 31 i~~~~~~~~~~----~-~~~iIDvR~~--------~e~~~------------ghi~ga~~i~ip~~~~-~~~~----~~~ 80 (153)
++++++.+.++ + +..|||+|+. .+|.. |||||| +++|+..+ .+.+ .++
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgA--v~~~~~~~~~~~~~~~~~~p 78 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGA--SFFDFEECLDEAGFEESMEP 78 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCC--EeeCHHHhhCcCCCCCCCCC
Confidence 57889999887 2 4789999987 88988 999999 99987554 2222 222
Q ss_pred C-hHHHHHHHhh-ccCCCeEEEEeCC---CccHHHHHHHHHHCCccceeeccccHHHHH
Q 031788 81 N-PDFLKKVRSL-CKEEDRLVVGCQS---GARSLHATADLLGAGFKHVSNFGGGHMAWV 134 (153)
Q Consensus 81 ~-~~~~~~~~~~-~~~~~~ivi~c~~---g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~ 134 (153)
. .+|.+.+.+. ++++++||+||++ |..+.++++.|+.+|++||++|+||+.+|+
T Consensus 79 ~~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~ 137 (138)
T cd01445 79 SEAEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF 137 (138)
T ss_pred CHHHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence 2 2677777777 8999999999986 678899999999999999999999999996
No 33
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.82 E-value=7.3e-20 Score=120.51 Aligned_cols=79 Identities=27% Similarity=0.481 Sum_probs=69.9
Q ss_pred CCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh-ccCCCeEEEEeCCCccHHHHHHHHHHCCcc
Q 031788 43 GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVGCQSGARSLHATADLLGAGFK 121 (153)
Q Consensus 43 ~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~ 121 (153)
...+||||++.||..|||||| +|+|+. ++...+.+. .+++++||+||++|.+|..++..|.+.||+
T Consensus 18 ~~~lIDvR~~~ef~~ghIpgA--inip~~-----------~l~~~l~~~~~~~~~~vvlyC~~G~rS~~aa~~L~~~G~~ 84 (101)
T TIGR02981 18 AEHWIDVRIPEQYQQEHIQGA--INIPLK-----------EIKEHIATAVPDKNDTVKLYCNAGRQSGMAKDILLDMGYT 84 (101)
T ss_pred CCEEEECCCHHHHhcCCCCCC--EECCHH-----------HHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHcCCC
Confidence 467999999999999999999 999996 666666655 467789999999999999999999999999
Q ss_pred ceeeccccHHHHHh
Q 031788 122 HVSNFGGGHMAWVQ 135 (153)
Q Consensus 122 ~v~~l~gG~~~w~~ 135 (153)
+++.+ ||+.+|.-
T Consensus 85 ~v~~~-GG~~~~~~ 97 (101)
T TIGR02981 85 HAENA-GGIKDIAM 97 (101)
T ss_pred eEEec-CCHHHhhh
Confidence 99985 99999953
No 34
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.82 E-value=1.3e-19 Score=141.51 Aligned_cols=115 Identities=19% Similarity=0.181 Sum_probs=93.5
Q ss_pred ceeecHHHHHHHHhCC-CeEEecC--------C-hhhhhcCCCCCcceeCccccccCCC-----CCCC-ChHHHHHHHhh
Q 031788 28 VITVDVRAAKNLLESG-YGYLDVR--------T-AEEFKEGHVDAAKIFNIPYMFNTPE-----GRVK-NPDFLKKVRSL 91 (153)
Q Consensus 28 ~~~i~~~~~~~~~~~~-~~iIDvR--------~-~~e~~~ghi~ga~~i~ip~~~~~~~-----~~~~-~~~~~~~~~~~ 91 (153)
...++++++.+.++++ .+|||+| + ..+|..|||||| +++|+..+... ..++ ..+|.+.+.++
T Consensus 21 ~~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgA--i~i~~~~~~~~~~~~~~~lp~~~~~~~~l~~~ 98 (320)
T PLN02723 21 EPVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGA--LFFDLDGISDRTTDLPHMLPSEEAFAAAVSAL 98 (320)
T ss_pred CceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCC--eecCHHHhcCCCCCcCCCCCCHHHHHHHHHHc
Confidence 3589999999999754 7899996 3 378999999999 88887554221 1122 24677777777
Q ss_pred -ccCCCeEEEEeCCCcc-HHHHHHHHHHCCccceeeccccHHHHHhCCCceecCC
Q 031788 92 -CKEEDRLVVGCQSGAR-SLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKARE 144 (153)
Q Consensus 92 -~~~~~~ivi~c~~g~~-a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~ 144 (153)
++++++||+||++|.. +.++++.|+.+||++|++|+||+.+|+++|+|+++..
T Consensus 99 Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~~ 153 (320)
T PLN02723 99 GIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESSA 153 (320)
T ss_pred CCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccCC
Confidence 8899999999997764 6788999999999999999999999999999998764
No 35
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.82 E-value=8.4e-20 Score=122.43 Aligned_cols=97 Identities=23% Similarity=0.412 Sum_probs=75.2
Q ss_pred eeecHHHHHHHHhCC---CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh--ccCCCeEEEEeC
Q 031788 29 ITVDVRAAKNLLESG---YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL--CKEEDRLVVGCQ 103 (153)
Q Consensus 29 ~~i~~~~~~~~~~~~---~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivi~c~ 103 (153)
..|+++++.+++..+ .++||||++ ||..|||||| +|+|+..+.. . ...+.+. .+++++||+||.
T Consensus 2 ~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA--~~ip~~~l~~-------~-~~~~~~~~~~~~~~~iv~yC~ 70 (113)
T cd01531 2 SYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGS--WHYPSTRFKA-------Q-LNQLVQLLSGSKKDTVVFHCA 70 (113)
T ss_pred CcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCC--EecCHHHHhh-------C-HHHHHHHHhcCCCCeEEEEee
Confidence 568999999998753 579999999 9999999999 9999962211 1 1122211 257789999998
Q ss_pred -CCccHHHHHHHHHH--------CCccceeeccccHHHHHhC
Q 031788 104 -SGARSLHATADLLG--------AGFKHVSNFGGGHMAWVQN 136 (153)
Q Consensus 104 -~g~~a~~~~~~L~~--------~G~~~v~~l~gG~~~w~~~ 136 (153)
++.|+..++..|.+ .|+.||++|.||+.+|.+.
T Consensus 71 ~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~ 112 (113)
T cd01531 71 LSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS 112 (113)
T ss_pred cCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence 66788888877654 4999999999999999863
No 36
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.81 E-value=1.5e-19 Score=119.93 Aligned_cols=89 Identities=39% Similarity=0.541 Sum_probs=76.3
Q ss_pred CCCeEEecCChhhhhcCCCCC-cceeCccccccCCCCCCCChHHHHHHHhh-ccCCCeEEEEeCCCccHHHHHHHHHHCC
Q 031788 42 SGYGYLDVRTAEEFKEGHVDA-AKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVGCQSGARSLHATADLLGAG 119 (153)
Q Consensus 42 ~~~~iIDvR~~~e~~~ghi~g-a~~i~ip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivi~c~~g~~a~~~~~~L~~~G 119 (153)
++.++||||++.||..+|||+ + .++|...+ ....... .++++++++||++|.||..++..|..+|
T Consensus 19 ~~~~liDvR~~~e~~~~~i~~~~--~~ip~~~~-----------~~~~~~~~~~~~~~ivv~C~~G~rS~~aa~~L~~~G 85 (110)
T COG0607 19 EDAVLLDVREPEEYERGHIPGAA--INIPLSEL-----------KAAENLLELPDDDPIVVYCASGVRSAAAAAALKLAG 85 (110)
T ss_pred CCCEEEeccChhHhhhcCCCcce--eeeecccc-----------hhhhcccccCCCCeEEEEeCCCCChHHHHHHHHHcC
Confidence 358999999999999999999 8 99999633 2211111 3789999999999999999999999999
Q ss_pred ccceeeccccHHHHHhCCCceecC
Q 031788 120 FKHVSNFGGGHMAWVQNGLKVKAR 143 (153)
Q Consensus 120 ~~~v~~l~gG~~~w~~~g~~~~~~ 143 (153)
|.+++.+.||+.+|..++.|....
T Consensus 86 ~~~~~~l~gG~~~w~~~~~~~~~~ 109 (110)
T COG0607 86 FTNVYNLDGGIDAWKGAGLPLVRG 109 (110)
T ss_pred CccccccCCcHHHHHhcCCCcccC
Confidence 999999999999999999988654
No 37
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.81 E-value=1.1e-19 Score=120.20 Aligned_cols=79 Identities=27% Similarity=0.486 Sum_probs=69.7
Q ss_pred CCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh-ccCCCeEEEEeCCCccHHHHHHHHHHCCcc
Q 031788 43 GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVGCQSGARSLHATADLLGAGFK 121 (153)
Q Consensus 43 ~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~ 121 (153)
+-.+||+|++.||..+||||| +|+|+. ++.+.+.+. .+++++||+||++|.+|..+++.|.+.||+
T Consensus 20 ~~~lIDvR~~~ef~~ghIpGA--iniP~~-----------~l~~~l~~l~~~~~~~IVlyC~~G~rS~~aa~~L~~~G~~ 86 (104)
T PRK10287 20 AEHWIDVRVPEQYQQEHVQGA--INIPLK-----------EVKERIATAVPDKNDTVKLYCNAGRQSGQAKEILSEMGYT 86 (104)
T ss_pred CCEEEECCCHHHHhcCCCCcc--EECCHH-----------HHHHHHHhcCCCCCCeEEEEeCCChHHHHHHHHHHHcCCC
Confidence 357999999999999999999 999985 666666665 466788999999999999999999999999
Q ss_pred ceeeccccHHHHHh
Q 031788 122 HVSNFGGGHMAWVQ 135 (153)
Q Consensus 122 ~v~~l~gG~~~w~~ 135 (153)
+++. .||+.+|.-
T Consensus 87 ~v~~-~GG~~~~~~ 99 (104)
T PRK10287 87 HAEN-AGGLKDIAM 99 (104)
T ss_pred eEEe-cCCHHHHhh
Confidence 9987 699999964
No 38
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.81 E-value=1.2e-19 Score=115.69 Aligned_cols=85 Identities=38% Similarity=0.576 Sum_probs=71.1
Q ss_pred HHHHh-CCCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHH-HhhccCCCeEEEEeCCCccHHHHHHH
Q 031788 37 KNLLE-SGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKV-RSLCKEEDRLVVGCQSGARSLHATAD 114 (153)
Q Consensus 37 ~~~~~-~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ivi~c~~g~~a~~~~~~ 114 (153)
.++++ .+..|||+|++.+|..+||||| +++|.. ++.... ....+++++||+||++|.++..+++.
T Consensus 3 ~~~~~~~~~~iiD~R~~~~~~~~~i~ga--~~~~~~-----------~~~~~~~~~~~~~~~~vv~~c~~~~~a~~~~~~ 69 (89)
T cd00158 3 KELLDDEDAVLLDVREPEEYAAGHIPGA--INIPLS-----------ELEERAALLELDKDKPIVVYCRSGNRSARAAKL 69 (89)
T ss_pred HHHhcCCCeEEEECCCHHHHhccccCCC--EecchH-----------HHhhHHHhhccCCCCeEEEEeCCCchHHHHHHH
Confidence 34443 3589999999999999999999 999985 333321 22257899999999999999999999
Q ss_pred HHHCCccceeeccccHHHHH
Q 031788 115 LLGAGFKHVSNFGGGHMAWV 134 (153)
Q Consensus 115 L~~~G~~~v~~l~gG~~~w~ 134 (153)
|+..||.++++|.||+.+|.
T Consensus 70 l~~~G~~~v~~l~gG~~~w~ 89 (89)
T cd00158 70 LRKAGGTNVYNLEGGMLAWK 89 (89)
T ss_pred HHHhCcccEEEecCChhhcC
Confidence 99999999999999999994
No 39
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.80 E-value=2e-19 Score=138.20 Aligned_cols=111 Identities=20% Similarity=0.313 Sum_probs=88.6
Q ss_pred ecHHHHHHHHhC-CCeEEecCChhhhh-----------cCCCCCcceeCccccccCCCCCCCCh-HHHHHHHhh-ccCCC
Q 031788 31 VDVRAAKNLLES-GYGYLDVRTAEEFK-----------EGHVDAAKIFNIPYMFNTPEGRVKNP-DFLKKVRSL-CKEED 96 (153)
Q Consensus 31 i~~~~~~~~~~~-~~~iIDvR~~~e~~-----------~ghi~ga~~i~ip~~~~~~~~~~~~~-~~~~~~~~~-~~~~~ 96 (153)
.+.+++....++ +.+|||+|++.||. .|||||| +|+|+..+...+.+..+ ++...+.+. +++++
T Consensus 155 ~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA--~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 232 (281)
T PRK11493 155 VRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGA--LNVPWTELVREGELKTTDELDAIFFGRGVSFDR 232 (281)
T ss_pred ecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCcccccCCCc--CCCCHHHhcCCCCcCCHHHHHHHHHhcCCCCCC
Confidence 344555545544 47899999999995 6999999 99998776444444443 444455544 78899
Q ss_pred eEEEEeCCCccHHHHHHHHHHCCccceeeccccHHHHHh-CCCceecC
Q 031788 97 RLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQ-NGLKVKAR 143 (153)
Q Consensus 97 ~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~-~g~~~~~~ 143 (153)
+||+||++|.+|..++..|..+||+||++|+||+..|.. .++|++++
T Consensus 233 ~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~P~~~~ 280 (281)
T PRK11493 233 PIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSEWGARADLPVEPA 280 (281)
T ss_pred CEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHHHccCCCCCcCCC
Confidence 999999999999999999999999999999999999998 68998865
No 40
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.80 E-value=2.4e-19 Score=135.94 Aligned_cols=101 Identities=24% Similarity=0.333 Sum_probs=83.1
Q ss_pred CcceeecHHHHHHHHhCC-------CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh--ccCCC
Q 031788 26 AEVITVDVRAAKNLLESG-------YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL--CKEED 96 (153)
Q Consensus 26 ~~~~~i~~~~~~~~~~~~-------~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 96 (153)
.....+++.++.++++++ .++||||++.||..|||||| +|+|...+. ++..++.+. ..+++
T Consensus 107 ~~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GA--iniPl~~f~--------~~~~~l~~~~~~~kdk 176 (257)
T PRK05320 107 GRAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGA--LDYRIDKFT--------EFPEALAAHRADLAGK 176 (257)
T ss_pred CcCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCC--EeCChhHhh--------hhHHHHHhhhhhcCCC
Confidence 345789999999988652 68999999999999999999 999995221 222223222 12789
Q ss_pred eEEEEeCCCccHHHHHHHHHHCCccceeeccccHHHHHhC
Q 031788 97 RLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQN 136 (153)
Q Consensus 97 ~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~ 136 (153)
+|++||.+|.|+..++..|++.||+||+.|.||+.+|.+.
T Consensus 177 ~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~~ 216 (257)
T PRK05320 177 TVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILKYFEE 216 (257)
T ss_pred eEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHHHHHh
Confidence 9999999999999999999999999999999999999874
No 41
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.80 E-value=3.6e-19 Score=139.06 Aligned_cols=112 Identities=17% Similarity=0.312 Sum_probs=91.3
Q ss_pred ecHHHHHHHHhC-CCeEEecCChhhh-----------hcCCCCCcceeCcccccc-CCCCCCCCh-HHHHHHHhh-ccCC
Q 031788 31 VDVRAAKNLLES-GYGYLDVRTAEEF-----------KEGHVDAAKIFNIPYMFN-TPEGRVKNP-DFLKKVRSL-CKEE 95 (153)
Q Consensus 31 i~~~~~~~~~~~-~~~iIDvR~~~e~-----------~~ghi~ga~~i~ip~~~~-~~~~~~~~~-~~~~~~~~~-~~~~ 95 (153)
++.+++.+.+++ +..|||+|++.+| ..|||||| +|+|+..+ ...+.+... ++.+.+.+. ++++
T Consensus 192 ~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgA--vnip~~~~~~~~~~~~~~~el~~~~~~~gi~~~ 269 (320)
T PLN02723 192 WTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGS--KCVPFPQMLDSSQTLLPAEELKKRFEQEGISLD 269 (320)
T ss_pred ecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCC--cccCHHHhcCCCCCCCCHHHHHHHHHhcCCCCC
Confidence 678888888865 4789999999888 45999999 99998655 333444443 555555555 7899
Q ss_pred CeEEEEeCCCccHHHHHHHHHHCCccceeeccccHHHHHhC-CCceecCC
Q 031788 96 DRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQN-GLKVKARE 144 (153)
Q Consensus 96 ~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~-g~~~~~~~ 144 (153)
++||+||++|.+|..++..|+.+||+||++|+||+.+|... ..|++++.
T Consensus 270 ~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv~~~~ 319 (320)
T PLN02723 270 SPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGALPDTPVATST 319 (320)
T ss_pred CCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCccCCC
Confidence 99999999999999999999999999999999999999986 67877653
No 42
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.80 E-value=3.3e-19 Score=138.73 Aligned_cols=100 Identities=23% Similarity=0.368 Sum_probs=83.9
Q ss_pred cceeecHHHHHHHHhCC-CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHh-h-ccCCCeEEEEeC
Q 031788 27 EVITVDVRAAKNLLESG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRS-L-CKEEDRLVVGCQ 103 (153)
Q Consensus 27 ~~~~i~~~~~~~~~~~~-~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~ivi~c~ 103 (153)
....++++++.++++++ .+|||||++.||..|||||| +|+|+..+. ++..++.+ + ..++++||+||.
T Consensus 110 ~~~~is~~el~~~l~~~~~vlIDVR~~~E~~~GhI~GA--i~ip~~~~~--------~~~~~l~~~~~~~kdk~IvvyC~ 179 (314)
T PRK00142 110 VGTYLKPKEVNELLDDPDVVFIDMRNDYEYEIGHFENA--IEPDIETFR--------EFPPWVEENLDPLKDKKVVMYCT 179 (314)
T ss_pred CCcccCHHHHHHHhcCCCeEEEECCCHHHHhcCcCCCC--EeCCHHHhh--------hhHHHHHHhcCCCCcCeEEEECC
Confidence 34679999999988764 89999999999999999999 999985321 23333322 2 458899999999
Q ss_pred CCccHHHHHHHHHHCCccceeeccccHHHHHhC
Q 031788 104 SGARSLHATADLLGAGFKHVSNFGGGHMAWVQN 136 (153)
Q Consensus 104 ~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~ 136 (153)
+|.|+..++..|.+.||++|+.|.||+.+|.+.
T Consensus 180 ~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~w~~~ 212 (314)
T PRK00142 180 GGIRCEKASAWMKHEGFKEVYQLEGGIITYGED 212 (314)
T ss_pred CCcHHHHHHHHHHHcCCCcEEEecchHHHHHHh
Confidence 999999999999999999999999999999874
No 43
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.80 E-value=3e-19 Score=119.75 Aligned_cols=92 Identities=20% Similarity=0.330 Sum_probs=71.2
Q ss_pred eeecHHHHHHHHhCC-------CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh-----ccCCC
Q 031788 29 ITVDVRAAKNLLESG-------YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-----CKEED 96 (153)
Q Consensus 29 ~~i~~~~~~~~~~~~-------~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 96 (153)
..++++++.++++++ .+|||||++ ||..|||||| +|+|.. ++.+.+.+. ..+.+
T Consensus 2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgA--i~ip~~-----------~~~~~~~~~~~~~~~~~~~ 67 (113)
T cd01443 2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGS--INLPAQ-----------SCYQTLPQVYALFSLAGVK 67 (113)
T ss_pred cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCc--eecchh-----------HHHHHHHHHHHHhhhcCCC
Confidence 468999999999764 679999999 9999999999 999985 222222222 13567
Q ss_pred eEEEEeCC-CccHHHHHHHHH----HCCc--cceeeccccHHHHH
Q 031788 97 RLVVGCQS-GARSLHATADLL----GAGF--KHVSNFGGGHMAWV 134 (153)
Q Consensus 97 ~ivi~c~~-g~~a~~~~~~L~----~~G~--~~v~~l~gG~~~w~ 134 (153)
+||+||.+ |.|+.+++..|. +.|| .++++|.||+.+|.
T Consensus 68 ~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~ 112 (113)
T cd01443 68 LAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWY 112 (113)
T ss_pred EEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence 89999996 578887776654 3475 68999999999995
No 44
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.78 E-value=1.1e-18 Score=139.62 Aligned_cols=101 Identities=30% Similarity=0.404 Sum_probs=84.7
Q ss_pred CcceeecHHHHHHHHhCC--CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeC
Q 031788 26 AEVITVDVRAAKNLLESG--YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQ 103 (153)
Q Consensus 26 ~~~~~i~~~~~~~~~~~~--~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~ 103 (153)
.....++++++.++++++ .++||||++.||..+||||| +|+|+..+.. ...+.. ++++++||+||+
T Consensus 284 ~~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGA--inip~~~l~~---------~~~~~~-l~~d~~iVvyC~ 351 (392)
T PRK07878 284 AAGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGA--QLIPKSEILS---------GEALAK-LPQDRTIVLYCK 351 (392)
T ss_pred CCCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCC--EEcChHHhcc---------hhHHhh-CCCCCcEEEEcC
Confidence 345679999999998754 68999999999999999999 9999852210 012223 588999999999
Q ss_pred CCccHHHHHHHHHHCCccceeeccccHHHHHhCCC
Q 031788 104 SGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGL 138 (153)
Q Consensus 104 ~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~ 138 (153)
+|.+|..+++.|++.||++|+.|.||+.+|.++..
T Consensus 352 ~G~rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~ 386 (392)
T PRK07878 352 TGVRSAEALAALKKAGFSDAVHLQGGVVAWAKQVD 386 (392)
T ss_pred CChHHHHHHHHHHHcCCCcEEEecCcHHHHHHhcC
Confidence 99999999999999999999999999999988744
No 45
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.77 E-value=3.4e-18 Score=143.07 Aligned_cols=114 Identities=18% Similarity=0.311 Sum_probs=92.8
Q ss_pred eecHHHHHHHHhCC-CeEEecCChhhhh--------cCCCCCcceeCcccccc-CCCCCCCCh-HHHHHHHhh-ccCCCe
Q 031788 30 TVDVRAAKNLLESG-YGYLDVRTAEEFK--------EGHVDAAKIFNIPYMFN-TPEGRVKNP-DFLKKVRSL-CKEEDR 97 (153)
Q Consensus 30 ~i~~~~~~~~~~~~-~~iIDvR~~~e~~--------~ghi~ga~~i~ip~~~~-~~~~~~~~~-~~~~~~~~~-~~~~~~ 97 (153)
.++.+++.+.++++ ..|||+|++.+|. .|||||| +|+|+... ...+.+..+ ++.+.+.+. ++++++
T Consensus 148 ~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGA--vnip~~~~~~~~~~lk~~~el~~~~~~~Gi~~~~~ 225 (610)
T PRK09629 148 TATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHIPGA--VNFEWTAGMDKARNLRIRQDMPEILRDLGITPDKE 225 (610)
T ss_pred cccHHHHHHhhCCCCcEEEECCCccccCCcccccccCCCCCCC--eecCHHHhcCCCCCCCCHHHHHHHHHHcCCCCCCC
Confidence 56788888888654 7899999999994 6999999 99998654 333444444 455555555 789999
Q ss_pred EEEEeCCCccHHHHHHHHHHCCccceeeccccHHHHHhC-CCceecCCC
Q 031788 98 LVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQN-GLKVKAREK 145 (153)
Q Consensus 98 ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~-g~~~~~~~~ 145 (153)
||+||++|.+|..+++.|+.+||+||++|+||+.+|.+. +.|++++..
T Consensus 226 VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~lPv~~~~~ 274 (610)
T PRK09629 226 VITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTPVEVPTV 274 (610)
T ss_pred EEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHhCCCCCccccCCC
Confidence 999999999999999999999999999999999999985 778876653
No 46
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.75 E-value=7.3e-18 Score=128.83 Aligned_cols=114 Identities=25% Similarity=0.377 Sum_probs=95.7
Q ss_pred eeecHHHHHHHHhCC-CeEEecCChhhhhc----------CCCCCcceeCcccccc-CCCCCCCChHHHHHHHhh--ccC
Q 031788 29 ITVDVRAAKNLLESG-YGYLDVRTAEEFKE----------GHVDAAKIFNIPYMFN-TPEGRVKNPDFLKKVRSL--CKE 94 (153)
Q Consensus 29 ~~i~~~~~~~~~~~~-~~iIDvR~~~e~~~----------ghi~ga~~i~ip~~~~-~~~~~~~~~~~~~~~~~~--~~~ 94 (153)
...+..+++...+.. .+|||+|++.+|.. |||||| +|+|+..+ ++...++.++..+.+.+. +++
T Consensus 156 ~~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGA--iNipw~~~~~~~~~~~~~~~~~~l~~~~gi~~ 233 (285)
T COG2897 156 AVVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGKAGHIPGA--INIPWTDLVDDGGLFKSPEEIARLYADAGIDP 233 (285)
T ss_pred ccCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCC--cCcCHHHHhcCCCccCcHHHHHHHHHhcCCCC
Confidence 345556666666554 77899999999988 999999 99999877 555667777777777644 899
Q ss_pred CCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHHHHHhC-CCceecCC
Q 031788 95 EDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQN-GLKVKARE 144 (153)
Q Consensus 95 ~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~-g~~~~~~~ 144 (153)
++++|+||++|.+|......|..+|+.+++.|+|++..|.+. +.|++++.
T Consensus 234 ~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg~~~~~PV~~g~ 284 (285)
T COG2897 234 DKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWGSDPDRPVETGE 284 (285)
T ss_pred CCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhhcCCCCccccCC
Confidence 999999999999999999999999999889999999999986 66887764
No 47
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.75 E-value=5e-18 Score=133.47 Aligned_cols=109 Identities=24% Similarity=0.353 Sum_probs=83.6
Q ss_pred cHHHHHHHHhCCCeEEecCChhhhhcCCCCCcceeCccccccCCC----------C---------CCCChHHHHHHHhh-
Q 031788 32 DVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPE----------G---------RVKNPDFLKKVRSL- 91 (153)
Q Consensus 32 ~~~~~~~~~~~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~----------~---------~~~~~~~~~~~~~~- 91 (153)
+..++.+++.++.+|||||++.||..|||||| +|+|+....+. + .+..+++.+.+.+.
T Consensus 4 ~~~~~~~~~~~~~~lIDVRsp~Ef~~ghIpgA--iniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l~~~~~~~~ 81 (345)
T PRK11784 4 DAQDFRALFLNDTPLIDVRSPIEFAEGHIPGA--INLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNIAAHREEAW 81 (345)
T ss_pred cHHHHHHHHhCCCEEEECCCHHHHhcCCCCCe--eeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhHHHHHHHHH
Confidence 46778777777899999999999999999999 99999643210 0 11222333333322
Q ss_pred --c-cCCCeEEEEeC-CCccHHHHHHHHHHCCccceeeccccHHHHHhCCCceecC
Q 031788 92 --C-KEEDRLVVGCQ-SGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAR 143 (153)
Q Consensus 92 --~-~~~~~ivi~c~-~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~ 143 (153)
. +++++||+||. +|.||..+++.|...|| +++.|.||+.+|++.+.+....
T Consensus 82 ~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~~~~~~ 136 (345)
T PRK11784 82 ADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVIDTLEE 136 (345)
T ss_pred HhcccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhHHHHhh
Confidence 2 37899999995 78999999999999999 4999999999999988766554
No 48
>PRK07411 hypothetical protein; Validated
Probab=99.74 E-value=7.8e-18 Score=134.65 Aligned_cols=104 Identities=29% Similarity=0.426 Sum_probs=84.1
Q ss_pred CcceeecHHHHHHHHhCC---CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEe
Q 031788 26 AEVITVDVRAAKNLLESG---YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGC 102 (153)
Q Consensus 26 ~~~~~i~~~~~~~~~~~~---~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c 102 (153)
.....++++++.++++++ .++||||++.||..|||||| +|+|+..+... ...+.+.+ ++++++||+||
T Consensus 279 ~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGA--iniP~~~l~~~------~~~~~l~~-l~~d~~IVvyC 349 (390)
T PRK07411 279 AEIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGS--VLVPLPDIENG------PGVEKVKE-LLNGHRLIAHC 349 (390)
T ss_pred cccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCC--EEccHHHhhcc------cchHHHhh-cCCCCeEEEEC
Confidence 456789999999988743 58999999999999999999 99998643211 11223333 36889999999
Q ss_pred CCCccHHHHHHHHHHCCccceeeccccHHHHHhCCCc
Q 031788 103 QSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLK 139 (153)
Q Consensus 103 ~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~ 139 (153)
.+|.||..+++.|++.||++ +.+.||+.+|.++..|
T Consensus 350 ~~G~RS~~aa~~L~~~G~~~-~~l~GG~~~W~~~~~p 385 (390)
T PRK07411 350 KMGGRSAKALGILKEAGIEG-TNVKGGITAWSREVDP 385 (390)
T ss_pred CCCHHHHHHHHHHHHcCCCe-EEecchHHHHHHhcCC
Confidence 99999999999999999985 5799999999887544
No 49
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.74 E-value=6.2e-18 Score=133.75 Aligned_cols=95 Identities=29% Similarity=0.445 Sum_probs=78.7
Q ss_pred cceeecHHHHHHHHhCCCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHh-hccCCCeEEEEeCCC
Q 031788 27 EVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRS-LCKEEDRLVVGCQSG 105 (153)
Q Consensus 27 ~~~~i~~~~~~~~~~~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivi~c~~g 105 (153)
....++++++.+. ..+.+|||||++.||..+||||| +|+|+. ++...... .++++++||+||++|
T Consensus 259 ~~~~i~~~~~~~~-~~~~~IIDVR~~~ef~~ghIpgA--inip~~-----------~l~~~~~~~~~~~~~~IvvyC~~G 324 (355)
T PRK05597 259 FGEVLDVPRVSAL-PDGVTLIDVREPSEFAAYSIPGA--HNVPLS-----------AIREGANPPSVSAGDEVVVYCAAG 324 (355)
T ss_pred cccccCHHHHHhc-cCCCEEEECCCHHHHccCcCCCC--EEeCHH-----------HhhhccccccCCCCCeEEEEcCCC
Confidence 3456778887744 34578999999999999999999 999996 33322221 257889999999999
Q ss_pred ccHHHHHHHHHHCCccceeeccccHHHHHh
Q 031788 106 ARSLHATADLLGAGFKHVSNFGGGHMAWVQ 135 (153)
Q Consensus 106 ~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~ 135 (153)
.+|..+++.|.+.||++|+.|.||+.+|.+
T Consensus 325 ~rS~~Aa~~L~~~G~~nV~~L~GGi~~W~~ 354 (355)
T PRK05597 325 VRSAQAVAILERAGYTGMSSLDGGIEGWLD 354 (355)
T ss_pred HHHHHHHHHHHHcCCCCEEEecCcHHHHhh
Confidence 999999999999999999999999999975
No 50
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.74 E-value=4e-17 Score=124.77 Aligned_cols=122 Identities=21% Similarity=0.242 Sum_probs=97.3
Q ss_pred CCcceeecHHHHHHHHhC------CCeEEecCCh--hhhhcCCCCCcceeCcccccc--CC---CCCCCC-hHHHHHHHh
Q 031788 25 GAEVITVDVRAAKNLLES------GYGYLDVRTA--EEFKEGHVDAAKIFNIPYMFN--TP---EGRVKN-PDFLKKVRS 90 (153)
Q Consensus 25 ~~~~~~i~~~~~~~~~~~------~~~iIDvR~~--~e~~~ghi~ga~~i~ip~~~~--~~---~~~~~~-~~~~~~~~~ 90 (153)
+.....++++.+.+.+++ +..+++++.. .+|..+||||| ++++.... .+ ...++. +.|.+.+.+
T Consensus 7 ~~~~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGA--v~~d~~~~~~~~~~~~~~lp~~e~fa~~~~~ 84 (285)
T COG2897 7 MSSEFLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGA--VFFDWEADLSDPVPLPHMLPSPEQFAKLLGE 84 (285)
T ss_pred cCcceEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCC--EecCHHHhhcCCCCCCCCCCCHHHHHHHHHH
Confidence 445678999999998874 2455555554 89999999999 77776554 22 234444 477778888
Q ss_pred h-ccCCCeEEEEeC-CCccHHHHHHHHHHCCccceeeccccHHHHHhCCCceecCCCCCC
Q 031788 91 L-CKEEDRLVVGCQ-SGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREKPAD 148 (153)
Q Consensus 91 ~-~~~~~~ivi~c~-~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~~~~~ 148 (153)
+ |+.+++||+|.+ ++..|.+++|.|+.+|++||++|+||+++|+++|+|+++..++..
T Consensus 85 ~GI~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~~~~~~ 144 (285)
T COG2897 85 LGIRNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETEPPEPP 144 (285)
T ss_pred cCCCCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCCCCCCC
Confidence 8 999999999997 445789999999999999999999999999999999998665544
No 51
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.73 E-value=9.4e-18 Score=130.26 Aligned_cols=98 Identities=24% Similarity=0.378 Sum_probs=73.6
Q ss_pred CCeEEecCChhhhhcCCCCCcceeCccccccCCCCC-------------------CCCh---HHHHHHHhhccCCCeEEE
Q 031788 43 GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGR-------------------VKNP---DFLKKVRSLCKEEDRLVV 100 (153)
Q Consensus 43 ~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~-------------------~~~~---~~~~~~~~~~~~~~~ivi 100 (153)
...|||||++.||..|||||| +|+|+....+... +..+ ++.+.+....++++.||+
T Consensus 2 ~~~liDVRsp~Ef~~ghipgA--iniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~~~~~~vvv 79 (311)
T TIGR03167 2 FDPLIDVRSPAEFAEGHLPGA--INLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFADGPPQPLL 79 (311)
T ss_pred CCEEEECCCHHHHhcCCCcCC--EecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhcCCCCcEEE
Confidence 357999999999999999999 9999964321100 0011 222233223455666999
Q ss_pred EeC-CCccHHHHHHHHHHCCccceeeccccHHHHHhCCCceecC
Q 031788 101 GCQ-SGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAR 143 (153)
Q Consensus 101 ~c~-~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~ 143 (153)
||. +|.||..+++.|..+|| +++.+.||+.+|+..+.+....
T Consensus 80 yC~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~~~~ 122 (311)
T TIGR03167 80 YCWRGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQLEE 122 (311)
T ss_pred EECCCChHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhhhhc
Confidence 996 78899999999999999 5999999999999988776654
No 52
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.70 E-value=1.2e-16 Score=109.93 Aligned_cols=102 Identities=22% Similarity=0.187 Sum_probs=75.6
Q ss_pred ecHHHHHHHHhC---CCeEEecCChhhhhcCCCCCcceeCccccccC----CCC------CCCChHHHHHHHhhccCCCe
Q 031788 31 VDVRAAKNLLES---GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNT----PEG------RVKNPDFLKKVRSLCKEEDR 97 (153)
Q Consensus 31 i~~~~~~~~~~~---~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~----~~~------~~~~~~~~~~~~~~~~~~~~ 97 (153)
|+++++.+++++ +.+|||||++.+|..+||||| +++|..... +.+ .+..++..+.+... ++++
T Consensus 2 is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~a--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~ 77 (132)
T cd01446 2 IDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGA--VNVCCPTILRRRLQGGKILLQQLLSCPEDRDRLRRG--ESLA 77 (132)
T ss_pred cCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCc--EecChHHHHHHhhcccchhhhhhcCCHHHHHHHhcC--CCCe
Confidence 789999999974 378999999999999999999 888886431 001 12222333333332 6889
Q ss_pred EEEEeCCCcc---------HHHHHHHHHH--CCccceeeccccHHHHHhC
Q 031788 98 LVVGCQSGAR---------SLHATADLLG--AGFKHVSNFGGGHMAWVQN 136 (153)
Q Consensus 98 ivi~c~~g~~---------a~~~~~~L~~--~G~~~v~~l~gG~~~w~~~ 136 (153)
||+||+++.+ +..+++.|.. .|+.+|++|.||+.+|.+.
T Consensus 78 VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~~ 127 (132)
T cd01446 78 VVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSSE 127 (132)
T ss_pred EEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHhh
Confidence 9999997764 6667777777 4778899999999999763
No 53
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.65 E-value=3.4e-16 Score=124.33 Aligned_cols=94 Identities=26% Similarity=0.331 Sum_probs=74.0
Q ss_pred eeecHHHHHHHHhCC-CeEEecCChhhhhcCCCC---CcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCC
Q 031788 29 ITVDVRAAKNLLESG-YGYLDVRTAEEFKEGHVD---AAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQS 104 (153)
Q Consensus 29 ~~i~~~~~~~~~~~~-~~iIDvR~~~e~~~ghi~---ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~ 104 (153)
.+++++++.++++++ .++||||++.||..+||| || +|||...+... .++...+.. +++ ++||+||.+
T Consensus 271 ~~~~~~el~~~l~~~~~~lIDVR~~~E~~~ghI~~~~gA--inIPl~~l~~~-----~~~~~~l~~-~~~-~~Ivv~C~s 341 (370)
T PRK05600 271 ARTDTTSLIDATLNGSATLLDVREPHEVLLKDLPEGGAS--LKLPLSAITDD-----ADILHALSP-IDG-DNVVVYCAS 341 (370)
T ss_pred cccCHHHHHHHHhcCCeEEEECCCHHHhhhccCCCCCcc--EeCcHHHhhcc-----hhhhhhccc-cCC-CcEEEECCC
Confidence 368899999998765 789999999999999998 58 99999633110 011122222 233 499999999
Q ss_pred CccHHHHHHHHHHCCccc-eeeccccHH
Q 031788 105 GARSLHATADLLGAGFKH-VSNFGGGHM 131 (153)
Q Consensus 105 g~~a~~~~~~L~~~G~~~-v~~l~gG~~ 131 (153)
|.||..++..|++.||++ |+.|.||+.
T Consensus 342 G~RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 342 GIRSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred ChhHHHHHHHHHHcCCCCceEEeccccC
Confidence 999999999999999996 999999975
No 54
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.51 E-value=2.8e-14 Score=108.28 Aligned_cols=99 Identities=22% Similarity=0.318 Sum_probs=83.6
Q ss_pred ceeecHHHHHHHHhCC-CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh--ccCCCeEEEEeCC
Q 031788 28 VITVDVRAAKNLLESG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL--CKEEDRLVVGCQS 104 (153)
Q Consensus 28 ~~~i~~~~~~~~~~~~-~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivi~c~~ 104 (153)
-..++|+++.+++.++ .++||+|+..||.-||+.|| ++.+...+ . +|.+++.+. ..++++|+.||.+
T Consensus 112 G~yl~p~~wn~~l~D~~~vviDtRN~YE~~iG~F~gA--v~p~~~tF------r--efP~~v~~~~~~~~~KkVvmyCTG 181 (308)
T COG1054 112 GTYLSPKDWNELLSDPDVVVIDTRNDYEVAIGHFEGA--VEPDIETF------R--EFPAWVEENLDLLKDKKVVMYCTG 181 (308)
T ss_pred cCccCHHHHHHHhcCCCeEEEEcCcceeEeeeeecCc--cCCChhhh------h--hhHHHHHHHHHhccCCcEEEEcCC
Confidence 4679999999999875 89999999999999999999 88777422 1 555555544 4578899999999
Q ss_pred CccHHHHHHHHHHCCccceeeccccHHHHHhC
Q 031788 105 GARSLHATADLLGAGFKHVSNFGGGHMAWVQN 136 (153)
Q Consensus 105 g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~ 136 (153)
|.|...+..+|...||++||-|+||+-.+-+.
T Consensus 182 GIRCEKas~~m~~~GF~eVyhL~GGIl~Y~e~ 213 (308)
T COG1054 182 GIRCEKASAWMKENGFKEVYHLEGGILKYLED 213 (308)
T ss_pred ceeehhhHHHHHHhcchhhhcccchHHHHhhh
Confidence 99999999999999999999999999876553
No 55
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.51 E-value=5.3e-14 Score=115.45 Aligned_cols=79 Identities=15% Similarity=0.273 Sum_probs=67.0
Q ss_pred HHHHHhCCCeEEecCChhhhhcCCCCC----cceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCCCccHHHH
Q 031788 36 AKNLLESGYGYLDVRTAEEFKEGHVDA----AKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHA 111 (153)
Q Consensus 36 ~~~~~~~~~~iIDvR~~~e~~~ghi~g----a~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~g~~a~~~ 111 (153)
..+.+..+.++||||++.||..+|||| | +|+|+. ++...+.. +++++++++||++|.+|..+
T Consensus 400 ~~~~~~~~~~lIDVR~~~E~~~~hI~g~~~~a--~niP~~-----------~l~~~~~~-l~~~~~iivyC~~G~rS~~a 465 (482)
T PRK01269 400 TVSELPPDDVIIDIRSPDEQEDKPLKLEGVEV--KSLPFY-----------KLSTQFGD-LDQSKTYLLYCDRGVMSRLQ 465 (482)
T ss_pred HHHhcCCCCEEEECCCHHHHhcCCCCCCCceE--EECCHH-----------HHHHHHhh-cCCCCeEEEECCCCHHHHHH
Confidence 334444568999999999999999999 9 999996 55555544 47889999999999999999
Q ss_pred HHHHHHCCccceeeccc
Q 031788 112 TADLLGAGFKHVSNFGG 128 (153)
Q Consensus 112 ~~~L~~~G~~~v~~l~g 128 (153)
+..|...||+||+.|.+
T Consensus 466 a~~L~~~G~~nv~~y~~ 482 (482)
T PRK01269 466 ALYLREQGFSNVKVYRP 482 (482)
T ss_pred HHHHHHcCCccEEecCC
Confidence 99999999999998753
No 56
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=7.6e-13 Score=101.85 Aligned_cols=100 Identities=20% Similarity=0.346 Sum_probs=77.9
Q ss_pred cCCcceeecHHHHHHHHhCC-------CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh---c-
Q 031788 24 SGAEVITVDVRAAKNLLESG-------YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL---C- 92 (153)
Q Consensus 24 ~~~~~~~i~~~~~~~~~~~~-------~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~---~- 92 (153)
....+..|+++.++.+++.. ++|||+|-+.||.+|||+|| +|++.. ++...+.-. .
T Consensus 151 k~~~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkga--vnl~~~-----------~~~~~~f~~~~~~~ 217 (325)
T KOG3772|consen 151 KSQDLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGA--VNLYSK-----------ELLQDFFLLKDGVP 217 (325)
T ss_pred ccccccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccc--eecccH-----------hhhhhhhccccccc
Confidence 45668899999999999742 46899999999999999999 999985 222222211 1
Q ss_pred --cCCCeEEEEeC-CCccHHHHHHHHHH------------CCccceeeccccHHHHHhC
Q 031788 93 --KEEDRLVVGCQ-SGARSLHATADLLG------------AGFKHVSNFGGGHMAWVQN 136 (153)
Q Consensus 93 --~~~~~ivi~c~-~g~~a~~~~~~L~~------------~G~~~v~~l~gG~~~w~~~ 136 (153)
.....+|+||. +..|+..+|+.|+. +-|..+|+|+|||..|-..
T Consensus 218 ~~~~~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~ 276 (325)
T KOG3772|consen 218 SGSKRVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSN 276 (325)
T ss_pred cccCceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHh
Confidence 12346899999 77799999999984 3577899999999998765
No 57
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.40 E-value=4.7e-12 Score=95.77 Aligned_cols=118 Identities=21% Similarity=0.243 Sum_probs=91.7
Q ss_pred eeecHHHHHHHHhCC-CeEEecC---------ChhhhhcCCCCCcceeCcccccc---CCCCCCCC-hHHHHHHHhh-cc
Q 031788 29 ITVDVRAAKNLLESG-YGYLDVR---------TAEEFKEGHVDAAKIFNIPYMFN---TPEGRVKN-PDFLKKVRSL-CK 93 (153)
Q Consensus 29 ~~i~~~~~~~~~~~~-~~iIDvR---------~~~e~~~ghi~ga~~i~ip~~~~---~~~~~~~~-~~~~~~~~~~-~~ 93 (153)
..++++.+.+.+.+. ..|||.. ...||...|||||.++++....+ .....++. ..|.+....+ ++
T Consensus 5 ~iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lGi~ 84 (286)
T KOG1529|consen 5 SIVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSPYRHMLPTAEHFAEYASRLGVD 84 (286)
T ss_pred cccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCCcccccCccHHHHHHHHHhcCCC
Confidence 346778888888764 7889984 46677889999994444443222 22233444 4677788877 99
Q ss_pred CCCeEEEEeC--CCc-cHHHHHHHHHHCCccceeeccccHHHHHhCCCceecCCCC
Q 031788 94 EEDRLVVGCQ--SGA-RSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREKP 146 (153)
Q Consensus 94 ~~~~ivi~c~--~g~-~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~~~ 146 (153)
.++.+|||.+ .|. .|++++|.++..|+++|+.|.||+.+|+..|+|+++...+
T Consensus 85 n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s~~~~ 140 (286)
T KOG1529|consen 85 NGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDSSKVE 140 (286)
T ss_pred CCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCcccccccc
Confidence 9999999998 665 5889999999999999999999999999999999988853
No 58
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.27 E-value=9e-12 Score=96.46 Aligned_cols=100 Identities=29% Similarity=0.310 Sum_probs=79.8
Q ss_pred ceeecHHHHHHHHhCC--CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh-ccCCCeEEEEeCC
Q 031788 28 VITVDVRAAKNLLESG--YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVGCQS 104 (153)
Q Consensus 28 ~~~i~~~~~~~~~~~~--~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivi~c~~ 104 (153)
..++++.+++++++++ .+++|||+..+|+.-|+|.| +|||+....... - +..... -...++|+++|..
T Consensus 316 ~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP~a--vNIPL~~l~~~~------~-~~~~~~~~~~~~~I~ViCrr 386 (427)
T KOG2017|consen 316 DERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLPEA--VNIPLKELRSRS------G-KKLQGDLNTESKDIFVICRR 386 (427)
T ss_pred hhcccHHHHHHHHhcCCCeEEEeccCcceEEEEecccc--cccchhhhhhhh------h-hhhcccccccCCCEEEEeCC
Confidence 4689999999999874 78999999999999999999 999996332111 1 122222 3456779999999
Q ss_pred CccHHHHHHHHHHCCc-cceeeccccHHHHHhC
Q 031788 105 GARSLHATADLLGAGF-KHVSNFGGGHMAWVQN 136 (153)
Q Consensus 105 g~~a~~~~~~L~~~G~-~~v~~l~gG~~~w~~~ 136 (153)
|..|+++++.|++... .+|..+.||+.+|...
T Consensus 387 GNdSQ~Av~~Lre~~~~~~vrDvigGl~~w~~~ 419 (427)
T KOG2017|consen 387 GNDSQRAVRILREKFPDSSVRDVIGGLKAWAAK 419 (427)
T ss_pred CCchHHHHHHHHhhCCchhhhhhhhHHHHHHHh
Confidence 9999999999998655 4677999999999875
No 59
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=98.94 E-value=3.5e-09 Score=81.37 Aligned_cols=101 Identities=22% Similarity=0.282 Sum_probs=78.3
Q ss_pred CCcceeecHHHHHHHHhCC-------CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh-ccCCC
Q 031788 25 GAEVITVDVRAAKNLLESG-------YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEED 96 (153)
Q Consensus 25 ~~~~~~i~~~~~~~~~~~~-------~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 96 (153)
....++|+++.++++++.. .+|||+|=+.||.+|||-.| +||--. .++....... +.-..
T Consensus 238 ~Ds~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIina--VNi~s~----------~~l~~~F~hkplThp~ 305 (427)
T COG5105 238 SDSIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINA--VNISST----------KKLGLLFRHKPLTHPR 305 (427)
T ss_pred ccchhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeee--eecchH----------HHHHHHHHhccccCce
Confidence 4447899999999999743 46999999999999999999 998773 2333333222 23356
Q ss_pred eEEEEeC-CCccHHHHHHHHHHC------------CccceeeccccHHHHHhCC
Q 031788 97 RLVVGCQ-SGARSLHATADLLGA------------GFKHVSNFGGGHMAWVQNG 137 (153)
Q Consensus 97 ~ivi~c~-~g~~a~~~~~~L~~~------------G~~~v~~l~gG~~~w~~~g 137 (153)
.+|++|. +..|+...|+.|+.+ =|..|++|+||+..+..+-
T Consensus 306 aLifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~n~ 359 (427)
T COG5105 306 ALIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYSNY 359 (427)
T ss_pred eEEEEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhhcC
Confidence 7999999 778999999999854 2678999999999887653
No 60
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.93 E-value=3.7e-09 Score=80.21 Aligned_cols=89 Identities=25% Similarity=0.482 Sum_probs=74.3
Q ss_pred CeEEecCChhhhh-----------cCCCCCcceeCcccccc-CCCCCCC-ChHHHHHHHhh-ccCCCeEEEEeCCCccHH
Q 031788 44 YGYLDVRTAEEFK-----------EGHVDAAKIFNIPYMFN-TPEGRVK-NPDFLKKVRSL-CKEEDRLVVGCQSGARSL 109 (153)
Q Consensus 44 ~~iIDvR~~~e~~-----------~ghi~ga~~i~ip~~~~-~~~~~~~-~~~~~~~~~~~-~~~~~~ivi~c~~g~~a~ 109 (153)
...||.|+..+|. .|||||| +|+|+... .+.+... ..++.....+. +..++++++-|+.|..+.
T Consensus 173 ~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa--~n~P~~~~~~~~g~~k~~edl~~~f~~~~l~~~~p~~~sC~~Gisa~ 250 (286)
T KOG1529|consen 173 FQYLDARSKGRFDGTEPEPRSGATGGHIPGA--INFPFDEVLDPDGFIKPAEDLKHLFAQKGLKLSKPVIVSCGTGISAS 250 (286)
T ss_pred ceeeeccccccccccCCCCcccCcCccCCCc--ccCChHHhcccccccCCHHHHHHHHHhcCcccCCCEEEeeccchhHH
Confidence 6899999988883 5899999 99999877 5555444 33555555555 778999999999999999
Q ss_pred HHHHHHHHCCccceeeccccHHHHHh
Q 031788 110 HATADLLGAGFKHVSNFGGGHMAWVQ 135 (153)
Q Consensus 110 ~~~~~L~~~G~~~v~~l~gG~~~w~~ 135 (153)
..+-.|...| .++.+|+|++..|..
T Consensus 251 ~i~~al~r~g-~~~~lYdGS~~Ew~~ 275 (286)
T KOG1529|consen 251 IIALALERSG-PDAKLYDGSWTEWAL 275 (286)
T ss_pred HHHHHHHhcC-CCcceecccHHHHhh
Confidence 9999999999 889999999999975
No 61
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=97.88 E-value=0.00013 Score=50.23 Aligned_cols=105 Identities=15% Similarity=0.153 Sum_probs=63.2
Q ss_pred ceeecHHHHHHHHhCC-CeEEecCChhhhhcC----------CCCCcceeCccccccCCCCCCCChHHHHHHHhh-ccCC
Q 031788 28 VITVDVRAAKNLLESG-YGYLDVRTAEEFKEG----------HVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEE 95 (153)
Q Consensus 28 ~~~i~~~~~~~~~~~~-~~iIDvR~~~e~~~g----------hi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~-~~~~ 95 (153)
...++++++..+-+-+ ..|||.|+..|.... .-+|..++++|+... .+ .++-...+.+. -..+
T Consensus 12 s~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~----~~-~~~~v~~f~~~~~~~~ 86 (135)
T TIGR01244 12 SPQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAG----DI-TPDDVETFRAAIGAAE 86 (135)
T ss_pred cCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCC----CC-CHHHHHHHHHHHHhCC
Confidence 3568889998776667 689999998764321 124677888887532 12 22223333332 2346
Q ss_pred CeEEEEeCCCccHHHHHHH-HHHCCccceeeccccHHHHHhCCCcee
Q 031788 96 DRLVVGCQSGARSLHATAD-LLGAGFKHVSNFGGGHMAWVQNGLKVK 141 (153)
Q Consensus 96 ~~ivi~c~~g~~a~~~~~~-L~~~G~~~v~~l~gG~~~w~~~g~~~~ 141 (153)
++|++||.+|.|+..++.. +...|.+.-.++.-+ ++.|+.++
T Consensus 87 ~pvL~HC~sG~Rt~~l~al~~~~~g~~~~~i~~~~----~~~G~~~~ 129 (135)
T TIGR01244 87 GPVLAYCRSGTRSSLLWGFRQAAEGVPVEEIVRRA----QAAGYDLS 129 (135)
T ss_pred CCEEEEcCCChHHHHHHHHHHHHcCCCHHHHHHHH----HHcCCCcc
Confidence 8999999999997765443 344565433333322 44555554
No 62
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=97.63 E-value=0.00026 Score=47.19 Aligned_cols=79 Identities=14% Similarity=0.133 Sum_probs=41.5
Q ss_pred eeecHHHHHHHHhCC-CeEEecCChhhhhc----------CCCCCcceeCccccccCCCCCCCChHHHHHHHhh-ccCCC
Q 031788 29 ITVDVRAAKNLLESG-YGYLDVRTAEEFKE----------GHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEED 96 (153)
Q Consensus 29 ~~i~~~~~~~~~~~~-~~iIDvR~~~e~~~----------ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 96 (153)
..++++++.++-+.+ ..||+.|+..|-.. ..--|-.++++|... +.+. .+-.+.+.+. -..++
T Consensus 13 ~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~----~~~~-~~~v~~f~~~l~~~~~ 87 (110)
T PF04273_consen 13 GQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDG----GAIT-EEDVEAFADALESLPK 87 (110)
T ss_dssp CS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----T----TT---HHHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCC----CCCC-HHHHHHHHHHHHhCCC
Confidence 468999999888888 68999998765311 111244578888752 1222 2333333332 23467
Q ss_pred eEEEEeCCCccHHHHH
Q 031788 97 RLVVGCQSGARSLHAT 112 (153)
Q Consensus 97 ~ivi~c~~g~~a~~~~ 112 (153)
||++||.+|.|+...+
T Consensus 88 Pvl~hC~sG~Ra~~l~ 103 (110)
T PF04273_consen 88 PVLAHCRSGTRASALW 103 (110)
T ss_dssp SEEEE-SCSHHHHHHH
T ss_pred CEEEECCCChhHHHHH
Confidence 9999999999975543
No 63
>COG2603 Predicted ATPase [General function prediction only]
Probab=97.51 E-value=0.00024 Score=54.54 Aligned_cols=99 Identities=24% Similarity=0.299 Sum_probs=64.3
Q ss_pred HHHHHHHHhCCCeEEecCChhhhhcCCCCCcceeCccccccC-------CCCC-CC-----------ChHHHHHHHh---
Q 031788 33 VRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNT-------PEGR-VK-----------NPDFLKKVRS--- 90 (153)
Q Consensus 33 ~~~~~~~~~~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~-------~~~~-~~-----------~~~~~~~~~~--- 90 (153)
.++...++-+...+||||.+.||..|+.|++ +|+|..... .+.. .. ..+....+..
T Consensus 5 ~q~~~~~~~~~~~lid~rap~ef~~g~~~ia--~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask 82 (334)
T COG2603 5 EQDYRALLLADTPLIDVRAPIEFENGAMPIA--INLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASK 82 (334)
T ss_pred HHHHHHHHhcCCceeeccchHHHhcccchhh--hccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3444555556678999999999999999999 999986441 1111 00 0011111111
Q ss_pred hccCCCeEEEEeC-CCccHHHHHHHH-HHCCccceeeccccHHHHH
Q 031788 91 LCKEEDRLVVGCQ-SGARSLHATADL-LGAGFKHVSNFGGGHMAWV 134 (153)
Q Consensus 91 ~~~~~~~ivi~c~-~g~~a~~~~~~L-~~~G~~~v~~l~gG~~~w~ 134 (153)
....+.++-++|. +|.++...+.+| ...|++ +.-+.||+.+.+
T Consensus 83 ~f~e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~-~~r~iGGeKalr 127 (334)
T COG2603 83 AFQEENPVGILCARGGLRSKIVQKWLGYAAGID-YPRVIGGEKALR 127 (334)
T ss_pred HHHHhCCcceeeccccchhHHHHHHHHHHHHhh-hhhhhchHHHHH
Confidence 1234566666799 556899999999 678877 566778987754
No 64
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=96.87 E-value=0.00014 Score=56.93 Aligned_cols=85 Identities=8% Similarity=0.026 Sum_probs=61.6
Q ss_pred eeecHHHHHHHHhCCCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccC--CCeEEEEeCC--
Q 031788 29 ITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKE--EDRLVVGCQS-- 104 (153)
Q Consensus 29 ~~i~~~~~~~~~~~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ivi~c~~-- 104 (153)
+.-+++++.+.+.+...++|+|....|..+||+|+ +++|.. .+..++.++.+. .+++++.-..
T Consensus 14 ~i~~~~~~~~~l~~~~~~~d~rg~i~~a~egIngt--is~~~~-----------~~~~~~~~l~~~~~~~~i~l~~~~~~ 80 (314)
T PRK00142 14 PIEDPEAFRDEHLALCKSLGLKGRILVAEEGINGT--VSGTIE-----------QTEAYMAWLKADPRFADIRFKISEDD 80 (314)
T ss_pred cCCCHHHHHHHHHHHHHHcCCeeEEEEcCCCceEE--EEecHH-----------HHHHHHHHHhhCcCCCCceEEecccc
Confidence 34567788887777777899999999999999999 999985 677777777433 5666665443
Q ss_pred CccH----HHHHHHHHHCCcc-ceeec
Q 031788 105 GARS----LHATADLLGAGFK-HVSNF 126 (153)
Q Consensus 105 g~~a----~~~~~~L~~~G~~-~v~~l 126 (153)
+... .++...|...|++ ++..+
T Consensus 81 ~~~f~~l~~~~~~eLv~~G~d~~v~~~ 107 (314)
T PRK00142 81 GHAFPRLSVKVRKEIVALGLDDDIDPL 107 (314)
T ss_pred CCCcccceeeeeeeeeecCCCCCCCcc
Confidence 2222 5667778888985 66433
No 65
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=96.84 E-value=0.00039 Score=57.86 Aligned_cols=97 Identities=20% Similarity=0.241 Sum_probs=68.4
Q ss_pred CCcceeecHHHHHHHHhCCCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh----ccCCCeEEE
Q 031788 25 GAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL----CKEEDRLVV 100 (153)
Q Consensus 25 ~~~~~~i~~~~~~~~~~~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ivi 100 (153)
....++|+++++..+ ..+.++|.|...||.++|++++ +|+|+. .. +.-.+++... ...++.+++
T Consensus 618 se~~prmsAedl~~~--~~l~v~d~r~~~ef~r~~~s~s--~nip~~--~~------ea~l~~~~~l~~~~~~~~~~~v~ 685 (725)
T KOG1093|consen 618 SEHCPRISAEDLIWL--KMLYVLDTRQESEFQREHFSDS--INIPFN--NH------EADLDWLRFLPGIVCSEGKKCVV 685 (725)
T ss_pred hhcCccccHHHHHHH--HHHHHHhHHHHHHHHHhhcccc--ccCCcc--ch------HHHHHHhhcchHhHHhhCCeEEE
Confidence 344677888887666 4478899999999999999999 999995 10 1112222221 345676777
Q ss_pred EeCCCccHHHHHHHHHHCCccceeeccccHHHH
Q 031788 101 GCQSGARSLHATADLLGAGFKHVSNFGGGHMAW 133 (153)
Q Consensus 101 ~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w 133 (153)
+......+.+....+..+-+....++++|+++.
T Consensus 686 ~~~~~K~~~e~~~~~~~mk~p~~cil~~~~~~~ 718 (725)
T KOG1093|consen 686 VGKNDKHAAERLTELYVMKVPRICILHDGFNNI 718 (725)
T ss_pred eccchHHHHHHhhHHHHhcccHHHHHHHHHhhc
Confidence 765656677777777777788888999998843
No 66
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=96.50 E-value=0.008 Score=40.84 Aligned_cols=79 Identities=15% Similarity=0.209 Sum_probs=46.2
Q ss_pred hCC-CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCC--hHHHHHHHhhccCCCeEEEEeCCCc-cHHHH-HHHH
Q 031788 41 ESG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKN--PDFLKKVRSLCKEEDRLVVGCQSGA-RSLHA-TADL 115 (153)
Q Consensus 41 ~~~-~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ivi~c~~g~-~a~~~-~~~L 115 (153)
+.+ ..|||+++..+....+.+|-.+.++|+.++.. ..+.. +.+.+.+......+++|+|+|..|. |+..+ +.+|
T Consensus 25 ~~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l 103 (139)
T cd00127 25 KLGITHVLNVAKEVPNENLFLSDFNYLYVPILDLPS-QDISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATLVIAYL 103 (139)
T ss_pred HcCCCEEEEcccCCCCcccCCCCceEEEEEceeCCC-CChHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhHHHHHHHH
Confidence 345 68999999887633444555678888865431 11110 1223334433456789999999885 76533 4344
Q ss_pred -HHCCc
Q 031788 116 -LGAGF 120 (153)
Q Consensus 116 -~~~G~ 120 (153)
...|+
T Consensus 104 ~~~~~~ 109 (139)
T cd00127 104 MKTLGL 109 (139)
T ss_pred HHHcCC
Confidence 34443
No 67
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=96.34 E-value=0.023 Score=40.13 Aligned_cols=97 Identities=18% Similarity=0.253 Sum_probs=45.9
Q ss_pred CcceeecHHHHHHHHhCC-CeEEecCChhhhhc---CCCCCcceeCccccccCCCC--CCC-------------------
Q 031788 26 AEVITVDVRAAKNLLESG-YGYLDVRTAEEFKE---GHVDAAKIFNIPYMFNTPEG--RVK------------------- 80 (153)
Q Consensus 26 ~~~~~i~~~~~~~~~~~~-~~iIDvR~~~e~~~---ghi~ga~~i~ip~~~~~~~~--~~~------------------- 80 (153)
.....+|.++...+.+-+ ..|||.|++.|... ..++|...+++|........ .+.
T Consensus 25 ~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~ 104 (164)
T PF13350_consen 25 GNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAPRGMLEFYRE 104 (164)
T ss_dssp S--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHHHHHHHHHHH
T ss_pred CCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchhhHHHHHHHH
Confidence 345668888887776545 68999999999876 45678888888875442110 000
Q ss_pred -----ChHHHHHHHhhccCCCeEEEEeCCCc-cHH-HHHHHHHHCCccc
Q 031788 81 -----NPDFLKKVRSLCKEEDRLVVGCQSGA-RSL-HATADLLGAGFKH 122 (153)
Q Consensus 81 -----~~~~~~~~~~~~~~~~~ivi~c~~g~-~a~-~~~~~L~~~G~~~ 122 (153)
.+.+.+.+..+.+...+++++|..|. |.- .++-.|..+|.+.
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~alll~~lGV~~ 153 (164)
T PF13350_consen 105 MLESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAALLLSLLGVPD 153 (164)
T ss_dssp GGGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHHHHTT--H
T ss_pred HHHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHHHHHHcCCCH
Confidence 11222222222334479999999886 544 4555566788754
No 68
>PLN02727 NAD kinase
Probab=95.83 E-value=0.05 Score=48.18 Aligned_cols=84 Identities=18% Similarity=0.167 Sum_probs=55.3
Q ss_pred ceeecHHHHHHHHhCC-CeEEecCChhhhhcCCC----------CCcceeCccccccCCCCCCCChHHHHHHHhhc-c-C
Q 031788 28 VITVDVRAAKNLLESG-YGYLDVRTAEEFKEGHV----------DAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLC-K-E 94 (153)
Q Consensus 28 ~~~i~~~~~~~~~~~~-~~iIDvR~~~e~~~ghi----------~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~-~-~ 94 (153)
...++++++.++.+.+ ..||+.|+..|- .+.. .|-.++++|... .....++..+.+.+.+ + .
T Consensus 266 sgQpspe~la~LA~~GfKTIINLRpd~E~-~q~~~~ee~eAae~~GL~yVhIPVs~----~~apt~EqVe~fa~~l~~sl 340 (986)
T PLN02727 266 GGQVTEEGLKWLLEKGFKTIVDLRAEIVK-DNFYQAAVDDAISSGKIEVVKIPVEV----RTAPSAEQVEKFASLVSDSS 340 (986)
T ss_pred eCCCCHHHHHHHHHCCCeEEEECCCCCcC-CCchhHHHHHHHHHcCCeEEEeecCC----CCCCCHHHHHHHHHHHHhhc
Confidence 4678999998888888 689999997772 2222 244578888731 1222234444444443 2 5
Q ss_pred CCeEEEEeCCCcc--HHHHHHHHH
Q 031788 95 EDRLVVGCQSGAR--SLHATADLL 116 (153)
Q Consensus 95 ~~~ivi~c~~g~~--a~~~~~~L~ 116 (153)
.+||++||.+|.+ +..++.+|.
T Consensus 341 pkPVLvHCKSGarRAGamvA~yl~ 364 (986)
T PLN02727 341 KKPIYLHSKEGVWRTSAMVSRWKQ 364 (986)
T ss_pred CCCEEEECCCCCchHHHHHHHHHH
Confidence 8999999999984 345566665
No 69
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=95.28 E-value=0.065 Score=43.92 Aligned_cols=84 Identities=26% Similarity=0.301 Sum_probs=52.2
Q ss_pred CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh-------cc-----CCCeEEEEeCCCcc----
Q 031788 44 YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-------CK-----EEDRLVVGCQSGAR---- 107 (153)
Q Consensus 44 ~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~-------~~-----~~~~ivi~c~~g~~---- 107 (153)
..+||+|+..+|..||+..| .|.......+. ..+|...+..+ +. .+..+.++ ++|..
T Consensus 327 FFiVDcRpaeqynaGHlsta--FhlDc~lmlqe----P~~Fa~av~sLl~aqrqtie~~s~aggeHlcfm-GsGr~EED~ 399 (669)
T KOG3636|consen 327 FFIVDCRPAEQYNAGHLSTA--FHLDCVLMLQE----PEKFAIAVNSLLCAQRQTIERDSNAGGEHLCFM-GSGRDEEDN 399 (669)
T ss_pred EEEEeccchhhcccccchhh--hcccHHHHhcC----HHHHHHHHHHHHHHHHHhhhccccCCcceEEEe-ccCcchHHH
Confidence 46899999999999999988 77765322111 11454433332 22 23455555 34432
Q ss_pred -HHHHHHHHHHCCccceeeccccHHHHH
Q 031788 108 -SLHATADLLGAGFKHVSNFGGGHMAWV 134 (153)
Q Consensus 108 -a~~~~~~L~~~G~~~v~~l~gG~~~w~ 134 (153)
--++...+.+.|-..|.++.||+....
T Consensus 400 YmnMviA~FlQKnk~yVS~~~GGy~~lh 427 (669)
T KOG3636|consen 400 YMNMVIAMFLQKNKLYVSFVQGGYKKLH 427 (669)
T ss_pred HHHHHHHHHHhcCceEEEEecchHHHHH
Confidence 224445555667677999999998755
No 70
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=94.33 E-value=0.028 Score=43.04 Aligned_cols=101 Identities=16% Similarity=0.147 Sum_probs=55.3
Q ss_pred eecHHHHHHHHhC-CCeEEecCChhhhhcCCCCCcceeCcccccc--CCCCC------CCChHHHHHHHhhccCCCeEEE
Q 031788 30 TVDVRAAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFN--TPEGR------VKNPDFLKKVRSLCKEEDRLVV 100 (153)
Q Consensus 30 ~i~~~~~~~~~~~-~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~--~~~~~------~~~~~~~~~~~~~~~~~~~ivi 100 (153)
.++++++...+.. +.+++|+|+ +..||.+|+.+.+|--.. ...+. +++....+..... =+...+|.
T Consensus 5 ~~s~~wlnr~l~~~nllllDCRs----es~~i~~A~~valPalmlrrl~~g~l~~ra~~p~~~d~~~~~~~-c~~v~vil 79 (343)
T KOG1717|consen 5 SKSVAWLNRQLELGNLLLLDCRS----ESSHIESAINVALPALMLRRLTGGNLPVRALFPRSCDDKRFPAR-CGTVTVIL 79 (343)
T ss_pred HHHHHHHHhhcccCceEEEecCC----ccchhhhhhhhcchHHHHHHHhCCCCcceeccCCcccccccccc-CCcceeee
Confidence 4567778777764 488999999 567888883344443111 01111 1111111110000 12356888
Q ss_pred EeCCC--cc----HH----HHHHHHHHCCccceeeccccHHHHHhC
Q 031788 101 GCQSG--AR----SL----HATADLLGAGFKHVSNFGGGHMAWVQN 136 (153)
Q Consensus 101 ~c~~g--~~----a~----~~~~~L~~~G~~~v~~l~gG~~~w~~~ 136 (153)
|+.+. +. +. ...+.++..|+. ++.|.|||..+..+
T Consensus 80 yD~~~~e~e~~~~~~s~Lg~ll~kl~~~g~~-a~yL~ggF~~fq~e 124 (343)
T KOG1717|consen 80 YDESSAEWEEETGAESVLGLLLKKLKDEGCS-ARYLSGGFSKFQAE 124 (343)
T ss_pred cccccccccccchhhhHHHHHHHHHHhcCcc-hhhhhcccchhhhh
Confidence 87752 11 11 122456677887 89999999887764
No 71
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=93.79 E-value=0.33 Score=32.90 Aligned_cols=80 Identities=21% Similarity=0.299 Sum_probs=43.9
Q ss_pred HHhCC-CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCC--hHHHHHHHhhccCCCeEEEEeCCCc-cHHH-HHH
Q 031788 39 LLESG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKN--PDFLKKVRSLCKEEDRLVVGCQSGA-RSLH-ATA 113 (153)
Q Consensus 39 ~~~~~-~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ivi~c~~g~-~a~~-~~~ 113 (153)
+.+.+ ..||+++.+.+.. .-++-.++++|..+.. ...+.. +...+.+......+++|+++|..|. |+.. ++.
T Consensus 22 l~~~gi~~Vi~l~~~~~~~--~~~~~~~~~ipi~D~~-~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~~ 98 (138)
T smart00195 22 LKKLGITHVINVTNEVPNL--NKKGFTYLGVPILDNT-ETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATLIIA 98 (138)
T ss_pred HHHcCCCEEEEccCCCCCC--CCCCCEEEEEECCCCC-CCChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHHHHHH
Confidence 33445 6889998865432 2344467888875321 111110 1122233333567899999999885 7654 344
Q ss_pred HH-HHCCcc
Q 031788 114 DL-LGAGFK 121 (153)
Q Consensus 114 ~L-~~~G~~ 121 (153)
+| ...|++
T Consensus 99 yl~~~~~~~ 107 (138)
T smart00195 99 YLMKYRNLS 107 (138)
T ss_pred HHHHHhCCC
Confidence 44 446654
No 72
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=92.69 E-value=0.4 Score=37.70 Aligned_cols=67 Identities=13% Similarity=0.139 Sum_probs=45.3
Q ss_pred ceeecHHHHHHHHhC-CCeEEecCChhhhhc---CCCC-CcceeCccccccCCCCCCCChHHHHHHHhh---ccCCCeEE
Q 031788 28 VITVDVRAAKNLLES-GYGYLDVRTAEEFKE---GHVD-AAKIFNIPYMFNTPEGRVKNPDFLKKVRSL---CKEEDRLV 99 (153)
Q Consensus 28 ~~~i~~~~~~~~~~~-~~~iIDvR~~~e~~~---ghi~-ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iv 99 (153)
...+...++.+.+.+ +..|||+|+..+|.. ||++ +. . |- +..|...+... .+++++|+
T Consensus 135 ~tg~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs~fG~~~~~~--q--ps----------q~~fe~~L~~~l~~~~~~~~i~ 200 (311)
T TIGR03167 135 MTGSGKTELLHALANAGAQVLDLEGLANHRGSSFGALGLGP--Q--PS----------QKRFENALAEALRRLDPGRPIF 200 (311)
T ss_pred CCCcCHHHHHHHHhcCCCeEEECCchHHhcCcccCCCCCCC--C--Cc----------hHHHHHHHHHHHHhCCCCceEE
Confidence 456777788887765 478999999999988 8888 43 1 21 12444443332 47778888
Q ss_pred EEeCCCccH
Q 031788 100 VGCQSGARS 108 (153)
Q Consensus 100 i~c~~g~~a 108 (153)
+-|.+...+
T Consensus 201 ~e~es~~ig 209 (311)
T TIGR03167 201 VEDESRRIG 209 (311)
T ss_pred EEeCchhhc
Confidence 888866543
No 73
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.95 E-value=0.91 Score=30.69 Aligned_cols=80 Identities=18% Similarity=0.218 Sum_probs=49.6
Q ss_pred ceeecHHHHHHHHhCC-CeEEecCChhhhhc----------CCCCCcceeCccccccCCCCCCCCh---HHHHHHHhhcc
Q 031788 28 VITVDVRAAKNLLESG-YGYLDVRTAEEFKE----------GHVDAAKIFNIPYMFNTPEGRVKNP---DFLKKVRSLCK 93 (153)
Q Consensus 28 ~~~i~~~~~~~~~~~~-~~iIDvR~~~e~~~----------ghi~ga~~i~ip~~~~~~~~~~~~~---~~~~~~~~~~~ 93 (153)
...++++++.++-..+ ..||--|+..|-.. ..=.|--+.+||... ..+... .|.+.+. .
T Consensus 13 sgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~----~~iT~~dV~~f~~Al~---e 85 (130)
T COG3453 13 SGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTG----GGITEADVEAFQRALD---E 85 (130)
T ss_pred cCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCC----CCCCHHHHHHHHHHHH---H
Confidence 4578999998887777 68999998655311 000122245566631 122222 3444444 3
Q ss_pred CCCeEEEEeCCCccHHHHHHH
Q 031788 94 EEDRLVVGCQSGARSLHATAD 114 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~ 114 (153)
.+.|++.||.+|.|+...+..
T Consensus 86 aegPVlayCrsGtRs~~ly~~ 106 (130)
T COG3453 86 AEGPVLAYCRSGTRSLNLYGL 106 (130)
T ss_pred hCCCEEeeecCCchHHHHHHH
Confidence 589999999999998765443
No 74
>PRK12361 hypothetical protein; Provisional
Probab=90.59 E-value=0.74 Score=38.84 Aligned_cols=84 Identities=19% Similarity=0.180 Sum_probs=44.8
Q ss_pred cHHHHHHHHhCC-CeEEecCChhhhhc--CCCCCcceeCccccccCCCCCCCChHHHH---HHHhhccCCCeEEEEeCCC
Q 031788 32 DVRAAKNLLESG-YGYLDVRTAEEFKE--GHVDAAKIFNIPYMFNTPEGRVKNPDFLK---KVRSLCKEEDRLVVGCQSG 105 (153)
Q Consensus 32 ~~~~~~~~~~~~-~~iIDvR~~~e~~~--ghi~ga~~i~ip~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ivi~c~~g 105 (153)
++.++..+.+.+ ..|||+|.+.+... ..-.+..+.++|..+.... . ..++.+ .+.+....+++|+++|..|
T Consensus 109 ~a~d~~~L~~~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~~p-~--~~~l~~a~~~i~~~~~~~~~VlVHC~~G 185 (547)
T PRK12361 109 FPADLEKLKSNKITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHSVP-T--LAQLNQAINWIHRQVRANKSVVVHCALG 185 (547)
T ss_pred CcccHHHHHHcCCCEEEEcccccccccccccccCceEEEeecCCCCCC-c--HHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 345554444445 68999996433211 1122345678887543211 1 113322 2322245678999999977
Q ss_pred c-cHH-HHHHHHHHC
Q 031788 106 A-RSL-HATADLLGA 118 (153)
Q Consensus 106 ~-~a~-~~~~~L~~~ 118 (153)
. ||. .++.+|...
T Consensus 186 ~sRSa~vv~ayLm~~ 200 (547)
T PRK12361 186 RGRSVLVLAAYLLCK 200 (547)
T ss_pred CCcHHHHHHHHHHHh
Confidence 5 655 445566543
No 75
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=89.98 E-value=1.1 Score=29.07 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=28.3
Q ss_pred HHHHHHHhhccCCCeEEEEeCCCccH-HHHHHHHHHCCcc
Q 031788 83 DFLKKVRSLCKEEDRLVVGCQSGARS-LHATADLLGAGFK 121 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~ivi~c~~g~~a-~~~~~~L~~~G~~ 121 (153)
++.+.+.+ .+++++++.+++.++ ...++.|..+|++
T Consensus 21 e~l~~L~~---~g~~~~~lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 21 EALDALRE---RGKPVVFLTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp HHHHHHHH---TTSEEEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred HHHHHHHH---cCCCEEEEeCCCCCCHHHHHHHHHhcCcC
Confidence 67777765 589999999987766 7889999999986
No 76
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=89.61 E-value=2.9 Score=29.93 Aligned_cols=82 Identities=18% Similarity=0.243 Sum_probs=36.1
Q ss_pred HHHHHHHhCC-CeEEecCChhhhhcCCCC---------CcceeCccccccCCCCCCCCh----HHHHHHHhhccCCCeEE
Q 031788 34 RAAKNLLESG-YGYLDVRTAEEFKEGHVD---------AAKIFNIPYMFNTPEGRVKNP----DFLKKVRSLCKEEDRLV 99 (153)
Q Consensus 34 ~~~~~~~~~~-~~iIDvR~~~e~~~ghi~---------ga~~i~ip~~~~~~~~~~~~~----~~~~~~~~~~~~~~~iv 99 (153)
.++.++-..+ ..||=.-+..|...-.+| |-.++++|+.+. ..++. ++.+++...+..+++|+
T Consensus 62 ~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~----~aPd~~~~~~i~~eL~~~L~~g~~V~ 137 (168)
T PF05706_consen 62 ADLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDG----SAPDFAAAWQILEELAARLENGRKVL 137 (168)
T ss_dssp HHHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TT----S---HHHHHHHHHHHHHHHHTT--EE
T ss_pred HHHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCC----CCCCHHHHHHHHHHHHHHHHcCCEEE
Confidence 3444444444 234445666666554444 334667777433 22211 23333333378899999
Q ss_pred EEeCCC-ccHHH-HHHHHHHCC
Q 031788 100 VGCQSG-ARSLH-ATADLLGAG 119 (153)
Q Consensus 100 i~c~~g-~~a~~-~~~~L~~~G 119 (153)
++|.+| +|+-. |+..|.++|
T Consensus 138 vHC~GGlGRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 138 VHCRGGLGRTGLVAACLLLELG 159 (168)
T ss_dssp EE-SSSSSHHHHHHHHHHHHH-
T ss_pred EECCCCCCHHHHHHHHHHHHHc
Confidence 999977 47654 555565655
No 77
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=87.83 E-value=3.1 Score=29.54 Aligned_cols=77 Identities=16% Similarity=0.262 Sum_probs=40.7
Q ss_pred HHHHHhCC-CeEEecCCh----hhhhcCCCCCcceeCccccccCCCCCCCCh----HHHHHHHhh----ccCCCeEEEEe
Q 031788 36 AKNLLESG-YGYLDVRTA----EEFKEGHVDAAKIFNIPYMFNTPEGRVKNP----DFLKKVRSL----CKEEDRLVVGC 102 (153)
Q Consensus 36 ~~~~~~~~-~~iIDvR~~----~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~----~~~~~~~~~----~~~~~~ivi~c 102 (153)
+..+.+.+ ..||.+..+ ..+...+| .+.++|+.+. ..+.. +|.+.+.+. ..++.+|+|+|
T Consensus 33 l~~L~~~gI~~Iv~l~~~~~~~~~~~~~gi---~~~~~p~~D~----~~P~~~~i~~~~~~i~~~~~~~~~~g~~V~VHC 105 (166)
T PTZ00242 33 IKELQRYNVTHLVRVCGPTYDAELLEKNGI---EVHDWPFDDG----APPPKAVIDNWLRLLDQEFAKQSTPPETIAVHC 105 (166)
T ss_pred HHHHHhCCCeEEEecCCCCCCHHHHHHCCC---EEEecCCCCC----CCCCHHHHHHHHHHHHHHHHhhccCCCeEEEEC
Confidence 33333445 467777432 33443444 3466676322 12222 344444333 24689999999
Q ss_pred CCC-ccHHH-HHHHHHHCC
Q 031788 103 QSG-ARSLH-ATADLLGAG 119 (153)
Q Consensus 103 ~~g-~~a~~-~~~~L~~~G 119 (153)
..| +|+.. ++.+|.+.|
T Consensus 106 ~aGigRSgt~~a~yL~~~~ 124 (166)
T PTZ00242 106 VAGLGRAPILVALALVEYG 124 (166)
T ss_pred CCCCCHHHHHHHHHHHHhC
Confidence 977 46654 466665544
No 78
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=87.21 E-value=8.5 Score=29.20 Aligned_cols=71 Identities=18% Similarity=0.348 Sum_probs=40.6
Q ss_pred CeEEecCCh----hhhhcCCCCCcceeCccccccCCCCCCCChH----HHHHHHhhccCCCeEEEEeCCC-ccHH-HHHH
Q 031788 44 YGYLDVRTA----EEFKEGHVDAAKIFNIPYMFNTPEGRVKNPD----FLKKVRSLCKEEDRLVVGCQSG-ARSL-HATA 113 (153)
Q Consensus 44 ~~iIDvR~~----~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ivi~c~~g-~~a~-~~~~ 113 (153)
..||++..+ .++....| .+.++|+. ++..+..+ |.+.+...+..+..|+|+|..| +|+. .++.
T Consensus 118 ~~lVrlcE~~Yd~~~~~~~GI---~~~~lpip----Dg~aPs~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~Aa 190 (241)
T PTZ00393 118 TDLVRTCERTYNDGEITSAGI---NVHELIFP----DGDAPTVDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASI 190 (241)
T ss_pred CEEEECCCCCCCHHHHHHcCC---eEEEeecC----CCCCCCHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHH
Confidence 567877542 23333333 44556663 33334334 3333333356788999999966 4655 5567
Q ss_pred HHHHCCcc
Q 031788 114 DLLGAGFK 121 (153)
Q Consensus 114 ~L~~~G~~ 121 (153)
+|.+.|++
T Consensus 191 yLI~~Gms 198 (241)
T PTZ00393 191 VLIEFGMD 198 (241)
T ss_pred HHHHcCCC
Confidence 77777764
No 79
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=86.43 E-value=1.3 Score=31.90 Aligned_cols=39 Identities=23% Similarity=0.356 Sum_probs=23.8
Q ss_pred HHHHHHHhhccCCCeEEEEeCCCc-cHHHH-H-HHHHHCCcc
Q 031788 83 DFLKKVRSLCKEEDRLVVGCQSGA-RSLHA-T-ADLLGAGFK 121 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~ivi~c~~g~-~a~~~-~-~~L~~~G~~ 121 (153)
++.+.+.....++++|+++|..|. |+..+ + +.+...|..
T Consensus 93 ~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~ 134 (180)
T COG2453 93 KIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLS 134 (180)
T ss_pred HHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCC
Confidence 334444444677889999999774 66543 3 344444544
No 80
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=86.27 E-value=1.3 Score=29.68 Aligned_cols=77 Identities=17% Similarity=0.189 Sum_probs=40.6
Q ss_pred CeEEecCChhhh-hcCCCCCcceeCccccccCCCCCCC-ChHHHHHHHhhccCCCeEEEEeCCCc-cHH-HHHHHHHH-C
Q 031788 44 YGYLDVRTAEEF-KEGHVDAAKIFNIPYMFNTPEGRVK-NPDFLKKVRSLCKEEDRLVVGCQSGA-RSL-HATADLLG-A 118 (153)
Q Consensus 44 ~~iIDvR~~~e~-~~ghi~ga~~i~ip~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivi~c~~g~-~a~-~~~~~L~~-~ 118 (153)
..||+++.+.+. ....-++....++|..+........ -+...+.+.....++.+|+|+|..|. ||. .++.+|.. .
T Consensus 20 ~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~ 99 (133)
T PF00782_consen 20 THVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVAAAYLMKKN 99 (133)
T ss_dssp EEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHHHHHHHHHH
T ss_pred CEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHHHHHHHHHc
Confidence 478999986553 1122223355777765311110000 01233333333567899999999875 655 44555544 5
Q ss_pred Cc
Q 031788 119 GF 120 (153)
Q Consensus 119 G~ 120 (153)
|+
T Consensus 100 ~~ 101 (133)
T PF00782_consen 100 GM 101 (133)
T ss_dssp TS
T ss_pred CC
Confidence 54
No 81
>PRK15416 lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional
Probab=85.13 E-value=11 Score=27.88 Aligned_cols=84 Identities=11% Similarity=0.033 Sum_probs=48.3
Q ss_pred cCCcceeecHHHHHHHHhCCCeEEecCChhhhhcCCCCCc--ceeCccccccCCCCCCCChHHHHHHHhhccCCCe-EEE
Q 031788 24 SGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAA--KIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDR-LVV 100 (153)
Q Consensus 24 ~~~~~~~i~~~~~~~~~~~~~~iIDvR~~~e~~~ghi~ga--~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ivi 100 (153)
.....++|+..+++++-+.+..|+=+|..+- .+.-.+. ... -|++ +.+. +-.+.+.+.+..... -.+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~L~LiRHGet--~~~~~~~~~sD~-RpLT---erG~----~qA~~lg~~L~~~~~~d~I 104 (201)
T PRK15416 35 SSNGLPRIDNKTLAELAKQHPVVVLFRHAER--CDRSDNQCLSDK-TGIT---VKGT----QDARELGKAFSADIPDYDL 104 (201)
T ss_pred ccCCCccccHHHHHHHhcCCCEEEEEeCccc--cCccCCCCCCCC-CCCC---HHHH----HHHHHHHHHHhCCCCCCEE
Confidence 6788999999999888888888888897552 0111111 001 2221 1111 112222222222211 267
Q ss_pred EeCCCccHHHHHHHHHH
Q 031788 101 GCQSGARSLHATADLLG 117 (153)
Q Consensus 101 ~c~~g~~a~~~~~~L~~ 117 (153)
||..-.|+.+.++.+..
T Consensus 105 ~sSpa~Ra~qTAe~ia~ 121 (201)
T PRK15416 105 YSSNTVRTIQSATWFSA 121 (201)
T ss_pred EECCCHHHHHHHHHHhc
Confidence 99999999998888865
No 82
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=84.70 E-value=3.1 Score=29.53 Aligned_cols=39 Identities=26% Similarity=0.486 Sum_probs=27.9
Q ss_pred HHHHhhc--cCCCeEEEEeCCCcc---HHHHHHHHHHCCccceee
Q 031788 86 KKVRSLC--KEEDRLVVGCQSGAR---SLHATADLLGAGFKHVSN 125 (153)
Q Consensus 86 ~~~~~~~--~~~~~ivi~c~~g~~---a~~~~~~L~~~G~~~v~~ 125 (153)
+.+...+ ++.++|++.|++|.. +-.++++|...|++ |.+
T Consensus 14 ~~i~~~~~~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~-V~v 57 (169)
T PF03853_consen 14 ELIRKLFGSPKGPRVLILCGPGNNGGDGLVAARHLANRGYN-VTV 57 (169)
T ss_dssp HHHHHHSTCCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE-EEE
T ss_pred HHHHHHhcccCCCeEEEEECCCCChHHHHHHHHHHHHCCCe-EEE
Confidence 3444445 788999999997754 66889999999998 554
No 83
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=80.79 E-value=5.7 Score=29.35 Aligned_cols=30 Identities=33% Similarity=0.533 Sum_probs=24.3
Q ss_pred CCeEEEEeCCCc---cHHHHHHHHHHCCccceee
Q 031788 95 EDRLVVGCQSGA---RSLHATADLLGAGFKHVSN 125 (153)
Q Consensus 95 ~~~ivi~c~~g~---~a~~~~~~L~~~G~~~v~~ 125 (153)
..+++++|.+|. -+.-+|++|...|++ |.+
T Consensus 49 ~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~-V~v 81 (203)
T COG0062 49 ARRVLVLCGPGNNGGDGLVAARHLKAAGYA-VTV 81 (203)
T ss_pred CCEEEEEECCCCccHHHHHHHHHHHhCCCc-eEE
Confidence 568999999665 478999999999987 443
No 84
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=79.78 E-value=2.9 Score=29.43 Aligned_cols=42 Identities=17% Similarity=0.166 Sum_probs=25.1
Q ss_pred ccCCCeEEEEeCC-----CccHHHHHHHHHHCCccceeeccccHHHH
Q 031788 92 CKEEDRLVVGCQS-----GARSLHATADLLGAGFKHVSNFGGGHMAW 133 (153)
Q Consensus 92 ~~~~~~ivi~c~~-----g~~a~~~~~~L~~~G~~~v~~l~gG~~~w 133 (153)
++++..+++++-. |.....+++.|+++|..+...|+||-+.-
T Consensus 97 ~~~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgSs~ 143 (170)
T PF09992_consen 97 VTADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGSST 143 (170)
T ss_dssp E-TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG--
T ss_pred EeCCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcceE
Confidence 4556666666543 45677889999999999999999997653
No 85
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=75.67 E-value=18 Score=24.02 Aligned_cols=43 Identities=12% Similarity=0.212 Sum_probs=30.6
Q ss_pred HHHHHHHhhccCCCeEEEEeCCCcc---HHHHHHHHHHCCccceeec
Q 031788 83 DFLKKVRSLCKEEDRLVVGCQSGAR---SLHATADLLGAGFKHVSNF 126 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~ivi~c~~g~~---a~~~~~~L~~~G~~~v~~l 126 (153)
++...+.+. +++.++++-++.... -..+...+++.|+.++.+.
T Consensus 73 ~L~~~l~~~-~~~~~v~i~aD~~~~~~~vv~v~d~~~~~G~~~v~l~ 118 (121)
T TIGR02804 73 ELEAEIAQL-NKDQKVTLKSDKEAKFQDFVTITDMLKAKEHENVQIV 118 (121)
T ss_pred HHHHHHHhh-CCCCeEEEEeCCCCCHhHHHHHHHHHHHcCCCeEEEE
Confidence 566666655 567778888876543 4566778889999998764
No 86
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=75.38 E-value=16 Score=24.25 Aligned_cols=44 Identities=14% Similarity=0.111 Sum_probs=22.9
Q ss_pred HHHHHHHhhccCCCeEEEEeCCCc----cHHHHHHHHHHCCccceeecccc
Q 031788 83 DFLKKVRSLCKEEDRLVVGCQSGA----RSLHATADLLGAGFKHVSNFGGG 129 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~ivi~c~~g~----~a~~~~~~L~~~G~~~v~~l~gG 129 (153)
++.+...+ .+-.+|.+|..-. ......+.|++.|++++.++.||
T Consensus 41 ~~~~~a~~---~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG 88 (122)
T cd02071 41 EIVEAAIQ---EDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGG 88 (122)
T ss_pred HHHHHHHH---cCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEEC
Confidence 44444443 2344555555322 13444556666677666666665
No 87
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=74.48 E-value=7.8 Score=27.29 Aligned_cols=47 Identities=15% Similarity=0.119 Sum_probs=31.8
Q ss_pred HHHhhccCCCeEEEEeCCCc--cHHHHHHHHHH---CCccceeeccccHHHH
Q 031788 87 KVRSLCKEEDRLVVGCQSGA--RSLHATADLLG---AGFKHVSNFGGGHMAW 133 (153)
Q Consensus 87 ~~~~~~~~~~~ivi~c~~g~--~a~~~~~~L~~---~G~~~v~~l~gG~~~w 133 (153)
.+.+.++++..+|+.+..|. .|...++.|.. .|..++.++.||-.++
T Consensus 59 ~il~~i~~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G~ 110 (155)
T PF02590_consen 59 RILKKIPPNDYVILLDERGKQLSSEEFAKKLERWMNQGKSDIVFIIGGADGL 110 (155)
T ss_dssp HHHCTSHTTSEEEEE-TTSEE--HHHHHHHHHHHHHTTS-EEEEEE-BTTB-
T ss_pred HHHhhccCCCEEEEEcCCCccCChHHHHHHHHHHHhcCCceEEEEEecCCCC
Confidence 33333678888888888885 47788888775 7888899999986554
No 88
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=74.32 E-value=7.3 Score=29.80 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=37.5
Q ss_pred HHHHHHHhhccCCCeEEEEeCCCccHHHHHHHHHHCCccceeec
Q 031788 83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNF 126 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l 126 (153)
+..+.+.+.+.++..+++||+.-.+.....+.|++.||.++..+
T Consensus 176 ~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie~~ 219 (256)
T COG2519 176 NVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIEAV 219 (256)
T ss_pred HHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchhhh
Confidence 67777777788999999999988889999999999999876544
No 89
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=73.37 E-value=13 Score=25.28 Aligned_cols=53 Identities=11% Similarity=0.065 Sum_probs=28.5
Q ss_pred HHHHHHHhhccCCCeEEEEeCCCc----cHHHHHHHHHHCCccceeecccc------HHHHHhCCC
Q 031788 83 DFLKKVRSLCKEEDRLVVGCQSGA----RSLHATADLLGAGFKHVSNFGGG------HMAWVQNGL 138 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~ivi~c~~g~----~a~~~~~~L~~~G~~~v~~l~gG------~~~w~~~g~ 138 (153)
++.+...+ .+-.+|.+|..-. ......+.|++.|.+++.++.|| +..|++.|.
T Consensus 44 ~~v~aa~e---~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gv 106 (132)
T TIGR00640 44 EIARQAVE---ADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGV 106 (132)
T ss_pred HHHHHHHH---cCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCC
Confidence 44444433 3555666666221 23455666666676566666665 234555554
No 90
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=72.07 E-value=7.9 Score=26.94 Aligned_cols=52 Identities=17% Similarity=0.117 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHHHHHhhhcCCc--ceeecHHHHHHHHh--CC-----------CeEEecCChhhhh
Q 031788 5 RNWVTFLRGLFLLLLICRSSGAE--VITVDVRAAKNLLE--SG-----------YGYLDVRTAEEFK 56 (153)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~--~~-----------~~iIDvR~~~e~~ 56 (153)
|+++.+++.+++.++.+|+.... .+.++++++.++-. ++ ..+||-+.+.+..
T Consensus 2 r~~~s~~Lv~~~~~Lvsc~~p~~~~p~tysp~~l~~i~~~~~~i~~~~~r~~eLk~lI~kk~W~~vr 68 (142)
T TIGR03042 2 RSLASLLLVLLLTFLVSCSGPAAAVPPTYSPAQLAQIQRQAEGIEAAKDRLPELASLVAKEDWVFTR 68 (142)
T ss_pred hhHHHHHHHHHHHHHHHcCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcchHHHH
Confidence 56666666655555666664443 56899999876542 11 2467777766654
No 91
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=72.06 E-value=6.9 Score=29.69 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=24.3
Q ss_pred CCeEEEEeCCCc---cHHHHHHHHHHCCccceeec
Q 031788 95 EDRLVVGCQSGA---RSLHATADLLGAGFKHVSNF 126 (153)
Q Consensus 95 ~~~ivi~c~~g~---~a~~~~~~L~~~G~~~v~~l 126 (153)
.++|+++|..|. .+.-+|++|...||+ |.++
T Consensus 60 ~~~V~VlcG~GNNGGDGlv~AR~L~~~G~~-V~v~ 93 (246)
T PLN03050 60 HPRVLLVCGPGNNGGDGLVAARHLAHFGYE-VTVC 93 (246)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHHCCCe-EEEE
Confidence 368999999554 577889999999997 5444
No 92
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=71.59 E-value=14 Score=23.84 Aligned_cols=46 Identities=20% Similarity=0.264 Sum_probs=33.1
Q ss_pred HHHHHHhhccCCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccH
Q 031788 84 FLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGH 130 (153)
Q Consensus 84 ~~~~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~ 130 (153)
+.+.+.+..+++.+++++|.+......+...|.+.+.. +..+.|+.
T Consensus 17 i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~-~~~~~~~~ 62 (131)
T cd00079 17 LLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIK-VAALHGDG 62 (131)
T ss_pred HHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCc-EEEEECCC
Confidence 33344433446788999999888888888999887654 77777774
No 93
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=70.72 E-value=16 Score=31.80 Aligned_cols=87 Identities=15% Similarity=0.061 Sum_probs=52.8
Q ss_pred HHHHHHHHhCCCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCCCccHHHHH
Q 031788 33 VRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHAT 112 (153)
Q Consensus 33 ~~~~~~~~~~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~g~~a~~~~ 112 (153)
..++.+.++-+++.|++..+.....- +.- +..+-. . ....+.+.+.+....+++++|+|++...+...+
T Consensus 422 ~~El~~~y~l~vv~IPt~kp~~r~~~--~~~--v~~t~~-----~--K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~ 490 (656)
T PRK12898 422 AGELWSVYGLPVVRIPTNRPSQRRHL--PDE--VFLTAA-----A--KWAAVAARVRELHAQGRPVLVGTRSVAASERLS 490 (656)
T ss_pred HHHHHHHHCCCeEEeCCCCCccceec--CCE--EEeCHH-----H--HHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHH
Confidence 45676766666777888665532211 211 211110 0 001233333332335688999999999999999
Q ss_pred HHHHHCCccceeeccccHH
Q 031788 113 ADLLGAGFKHVSNFGGGHM 131 (153)
Q Consensus 113 ~~L~~~G~~~v~~l~gG~~ 131 (153)
..|...|++ +..|.|...
T Consensus 491 ~~L~~~gi~-~~~Lhg~~~ 508 (656)
T PRK12898 491 ALLREAGLP-HQVLNAKQD 508 (656)
T ss_pred HHHHHCCCC-EEEeeCCcH
Confidence 999999997 677887643
No 94
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=69.48 E-value=8.8 Score=33.31 Aligned_cols=48 Identities=21% Similarity=0.226 Sum_probs=37.9
Q ss_pred HHHHHHHhhccCCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHH
Q 031788 83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 131 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~ 131 (153)
.+.+.+......+.+++|+|++..++.+.+..|.+.|++ +..++|++.
T Consensus 434 ~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~-~~~~h~~~~ 481 (652)
T PRK05298 434 DLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIK-VRYLHSDID 481 (652)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhccee-EEEEECCCC
Confidence 455555554667889999999989999999999999986 677767644
No 95
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=69.07 E-value=6.8 Score=28.30 Aligned_cols=46 Identities=22% Similarity=0.343 Sum_probs=27.4
Q ss_pred HHHHHHHhhccCCCeEEEEeC----CCc------------c--HHHHHHHHHHCCccceeecccc
Q 031788 83 DFLKKVRSLCKEEDRLVVGCQ----SGA------------R--SLHATADLLGAGFKHVSNFGGG 129 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~ivi~c~----~g~------------~--a~~~~~~L~~~G~~~v~~l~gG 129 (153)
.|.+.+.+. +|++||+++.. .+. + ...+.+.|++.|.+|++++.|-
T Consensus 82 ~fv~~iR~~-hP~tPIllv~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~l~~~g~~nl~~l~g~ 145 (178)
T PF14606_consen 82 GFVKTIREA-HPDTPILLVSPIPYPAGYFDNSRGETVEEFREALREAVEQLRKEGDKNLYYLDGE 145 (178)
T ss_dssp HHHHHHHTT--SSS-EEEEE----TTTTS--TTS--HHHHHHHHHHHHHHHHHTT-TTEEEE-HH
T ss_pred HHHHHHHHh-CCCCCEEEEecCCccccccCchHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCch
Confidence 566666665 89999999862 110 0 1234555777899999999864
No 96
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=67.45 E-value=11 Score=31.09 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=32.1
Q ss_pred cCCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHH
Q 031788 93 KEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 131 (153)
Q Consensus 93 ~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~ 131 (153)
.+++..+|||++-..+..++..|.+.|+. +..+.||+.
T Consensus 224 ~~~~~~IIF~~s~~~~e~la~~L~~~g~~-~~~~H~~l~ 261 (470)
T TIGR00614 224 FKGKSGIIYCPSRKKSEQVTASLQNLGIA-AGAYHAGLE 261 (470)
T ss_pred cCCCceEEEECcHHHHHHHHHHHHhcCCC-eeEeeCCCC
Confidence 46677899999988999999999999987 777888763
No 97
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=67.39 E-value=11 Score=32.81 Aligned_cols=48 Identities=21% Similarity=0.228 Sum_probs=38.2
Q ss_pred HHHHHHHhhccCCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHH
Q 031788 83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 131 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~ 131 (153)
.+.+++.....++.+++++|++..++...++.|.+.|+. +..++|++.
T Consensus 430 ~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~-~~~lh~~~~ 477 (655)
T TIGR00631 430 DLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIK-VRYLHSEID 477 (655)
T ss_pred HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccc-eeeeeCCCC
Confidence 555666555678889999999989999999999999986 667767643
No 98
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=67.37 E-value=3.9 Score=29.00 Aligned_cols=78 Identities=14% Similarity=0.231 Sum_probs=31.5
Q ss_pred CeEEecCChh---hhhcC-CCCCcceeCccccccCC-CCCCCChHHHHHHHhh-c-cCCCeEEEEeCCCc-cHHHHHHHH
Q 031788 44 YGYLDVRTAE---EFKEG-HVDAAKIFNIPYMFNTP-EGRVKNPDFLKKVRSL-C-KEEDRLVVGCQSGA-RSLHATADL 115 (153)
Q Consensus 44 ~~iIDvR~~~---e~~~g-hi~ga~~i~ip~~~~~~-~~~~~~~~~~~~~~~~-~-~~~~~ivi~c~~g~-~a~~~~~~L 115 (153)
.+||..|++. ++... .=.|...++++...... ...+.. +...+..+. + ....||+++|.+|. |...+..-|
T Consensus 34 KTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~-~~v~~aL~~ild~~n~PvLiHC~~G~~rTG~vvg~l 112 (164)
T PF03162_consen 34 KTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISE-EQVAEALEIILDPRNYPVLIHCNHGKDRTGLVVGCL 112 (164)
T ss_dssp SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----H-HHHHHHHHHHH-GGG-SEEEE-SSSSSHHHHHHHHH
T ss_pred ceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCH-HHHHHHHHHHhCCCCCCEEEEeCCCCcchhhHHHHH
Confidence 6889998752 22210 01122345666542211 112222 333333332 2 35689999999775 666666666
Q ss_pred HH-CCccc
Q 031788 116 LG-AGFKH 122 (153)
Q Consensus 116 ~~-~G~~~ 122 (153)
++ .|++.
T Consensus 113 Rk~Q~W~~ 120 (164)
T PF03162_consen 113 RKLQGWSL 120 (164)
T ss_dssp HHHTTB-H
T ss_pred HHHcCCCH
Confidence 54 56653
No 99
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=67.30 E-value=6.4 Score=25.42 Aligned_cols=9 Identities=22% Similarity=0.575 Sum_probs=3.8
Q ss_pred CCcchhHHHH
Q 031788 1 MGVSRNWVTF 10 (153)
Q Consensus 1 ~~~~~~~~~~ 10 (153)
|. +++.+++
T Consensus 1 Ma-SK~~llL 9 (95)
T PF07172_consen 1 MA-SKAFLLL 9 (95)
T ss_pred Cc-hhHHHHH
Confidence 55 3343333
No 100
>PRK10565 putative carbohydrate kinase; Provisional
Probab=67.18 E-value=14 Score=31.11 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=25.5
Q ss_pred ccCCCeEEEEeCCCc---cHHHHHHHHHHCCccceeec
Q 031788 92 CKEEDRLVVGCQSGA---RSLHATADLLGAGFKHVSNF 126 (153)
Q Consensus 92 ~~~~~~ivi~c~~g~---~a~~~~~~L~~~G~~~v~~l 126 (153)
.++.++|+++|..|. .+.-++++|...||+ |.++
T Consensus 57 ~~~~~~v~vl~G~GNNGGDG~v~AR~L~~~G~~-V~v~ 93 (508)
T PRK10565 57 YPDARHWLVLCGHGNNGGDGYVVARLAQAAGID-VTLL 93 (508)
T ss_pred cCCCCeEEEEEcCCCchHHHHHHHHHHHHCCCc-eEEE
Confidence 345677999999664 467889999999997 4433
No 101
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=66.93 E-value=20 Score=26.25 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=25.2
Q ss_pred ccCCCeEEEEeCCCc---cHHHHHHHHHHCCccceeec
Q 031788 92 CKEEDRLVVGCQSGA---RSLHATADLLGAGFKHVSNF 126 (153)
Q Consensus 92 ~~~~~~ivi~c~~g~---~a~~~~~~L~~~G~~~v~~l 126 (153)
.++.++|+++|..|. .+.-++++|...|++ |+.+
T Consensus 42 ~~~~~~v~vl~G~GNNGGDGlv~AR~L~~~~v~-V~~~ 78 (205)
T TIGR00197 42 FPLAGHVIIFCGPGNNGGDGFVVARHLKGFGVE-VFLL 78 (205)
T ss_pred cCCCCeEEEEECCCCCccHHHHHHHHHHhCCCE-EEEE
Confidence 345678999999654 577889999887765 6654
No 102
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=66.79 E-value=3.9 Score=27.65 Aligned_cols=36 Identities=25% Similarity=0.234 Sum_probs=23.3
Q ss_pred EEEEeCCC-ccHHHHHHHHHHC----CccceeeccccHHHH
Q 031788 98 LVVGCQSG-ARSLHATADLLGA----GFKHVSNFGGGHMAW 133 (153)
Q Consensus 98 ivi~c~~g-~~a~~~~~~L~~~----G~~~v~~l~gG~~~w 133 (153)
|+++|.+. -||+.|...++.+ +-.++.+...|..+|
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~~~ 41 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTEAW 41 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESSST
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeeccc
Confidence 56778743 4777776666665 556677777776544
No 103
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=66.55 E-value=13 Score=28.60 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=25.2
Q ss_pred HHHHHHHhhccCCCeEEEEeCCCccHHH-HHHHHHHCC
Q 031788 83 DFLKKVRSLCKEEDRLVVGCQSGARSLH-ATADLLGAG 119 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~ivi~c~~g~~a~~-~~~~L~~~G 119 (153)
++.+.+.+ .+.+++++.+++.++.. .+++|...|
T Consensus 31 e~l~~L~~---~g~~~iflTNn~~~s~~~~~~~L~~~~ 65 (269)
T COG0647 31 EALKRLKA---AGKPVIFLTNNSTRSREVVAARLSSLG 65 (269)
T ss_pred HHHHHHHH---cCCeEEEEeCCCCCCHHHHHHHHHhhc
Confidence 66666664 58899999998887765 777887733
No 104
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=65.95 E-value=23 Score=24.31 Aligned_cols=45 Identities=13% Similarity=0.292 Sum_probs=31.1
Q ss_pred HHHHHHHhh--ccCCCeEEEEeCCCcc---HHHHHHHHHHCCccceeecc
Q 031788 83 DFLKKVRSL--CKEEDRLVVGCQSGAR---SLHATADLLGAGFKHVSNFG 127 (153)
Q Consensus 83 ~~~~~~~~~--~~~~~~ivi~c~~g~~---a~~~~~~L~~~G~~~v~~l~ 127 (153)
++.+.+.+. .+++.++++.++.... -..+...+++.|+.++.+..
T Consensus 85 ~L~~~L~~~~~~~~~~~V~I~aD~~~~~~~vv~vmd~l~~aG~~~v~l~t 134 (141)
T PRK11267 85 TMITALDALTEGKKDTTIFFRADKTVDYETLMKVMDTLHQAGYLKIGLVG 134 (141)
T ss_pred HHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 555555554 3567778888876544 44667788899999987754
No 105
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=65.62 E-value=13 Score=26.16 Aligned_cols=47 Identities=17% Similarity=0.156 Sum_probs=33.6
Q ss_pred HHHhhccCCCeEEEEeCCCc--cHHHHHHHHHH---CCccceeeccccHHHH
Q 031788 87 KVRSLCKEEDRLVVGCQSGA--RSLHATADLLG---AGFKHVSNFGGGHMAW 133 (153)
Q Consensus 87 ~~~~~~~~~~~ivi~c~~g~--~a~~~~~~L~~---~G~~~v~~l~gG~~~w 133 (153)
.+.+.+++++.+|+.|..|. .|...++.+.. .|..++.++.||-.++
T Consensus 59 ~il~~l~~~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGGa~G~ 110 (157)
T PRK00103 59 RILAALPKGARVIALDERGKQLSSEEFAQELERWRDDGRSDVAFVIGGADGL 110 (157)
T ss_pred HHHhhCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCccEEEEEcCcccc
Confidence 33334667777888888775 57888888865 4666899999987654
No 106
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=65.35 E-value=24 Score=22.44 Aligned_cols=37 Identities=8% Similarity=0.051 Sum_probs=23.5
Q ss_pred eEEEEeCCCccHHHH-H----HHHHHCCccceeeccccHHHHH
Q 031788 97 RLVVGCQSGARSLHA-T----ADLLGAGFKHVSNFGGGHMAWV 134 (153)
Q Consensus 97 ~ivi~c~~g~~a~~~-~----~~L~~~G~~~v~~l~gG~~~w~ 134 (153)
+|++.|++|..+... + +.|.+.|++ +.+.........
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~-~~v~~~~~~e~~ 45 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIP-VELIQCRVNEIE 45 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCe-EEEEEecHHHHh
Confidence 699999999854333 3 345678886 555555554443
No 107
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=64.86 E-value=15 Score=31.24 Aligned_cols=37 Identities=19% Similarity=0.254 Sum_probs=31.9
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHH
Q 031788 94 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 131 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~ 131 (153)
-+.+|||+.+.-..+..+|..|.++||. ++.|+||..
T Consensus 516 ~~ppiIIFvN~kk~~d~lAk~LeK~g~~-~~tlHg~k~ 552 (673)
T KOG0333|consen 516 FDPPIIIFVNTKKGADALAKILEKAGYK-VTTLHGGKS 552 (673)
T ss_pred CCCCEEEEEechhhHHHHHHHHhhccce-EEEeeCCcc
Confidence 4678888888877888899999999987 999999963
No 108
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=64.53 E-value=7.7 Score=33.29 Aligned_cols=38 Identities=11% Similarity=0.145 Sum_probs=33.2
Q ss_pred cCCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHH
Q 031788 93 KEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 131 (153)
Q Consensus 93 ~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~ 131 (153)
..+..-|+||.+-..+...+++|...|+. +..|.||++
T Consensus 228 ~~~~~GIIYc~sRk~~E~ia~~L~~~g~~-a~~YHaGl~ 265 (590)
T COG0514 228 QLSKSGIIYCLTRKKVEELAEWLRKNGIS-AGAYHAGLS 265 (590)
T ss_pred ccCCCeEEEEeeHHhHHHHHHHHHHCCCc-eEEecCCCC
Confidence 45667899999988999999999999987 888899974
No 109
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=64.39 E-value=34 Score=26.93 Aligned_cols=67 Identities=16% Similarity=0.198 Sum_probs=39.7
Q ss_pred HHHHHHHhC-CCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCCCccHH-HH
Q 031788 34 RAAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSL-HA 111 (153)
Q Consensus 34 ~~~~~~~~~-~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~g~~a~-~~ 111 (153)
++..+++.+ +.++.|+-.--.....-|||+ . +..+.+.+ .++.++++.+...++. .-
T Consensus 13 ~~~~e~l~~~DtfifDcDGVlW~g~~~ipGs--~----------------e~l~~L~~---~gK~i~fvTNNStksr~~y 71 (306)
T KOG2882|consen 13 EEARELLDSFDTFIFDCDGVLWLGEKPIPGS--P----------------EALNLLKS---LGKQIIFVTNNSTKSREQY 71 (306)
T ss_pred HHHHHHHhhcCEEEEcCCcceeecCCCCCCh--H----------------HHHHHHHH---cCCcEEEEeCCCcchHHHH
Confidence 456667765 578899877555555667777 2 55555554 3577777766444332 33
Q ss_pred HHHHHHCCcc
Q 031788 112 TADLLGAGFK 121 (153)
Q Consensus 112 ~~~L~~~G~~ 121 (153)
.+.+.++||.
T Consensus 72 ~kK~~~lG~~ 81 (306)
T KOG2882|consen 72 MKKFAKLGFN 81 (306)
T ss_pred HHHHHHhCcc
Confidence 4445555554
No 110
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=63.58 E-value=11 Score=24.11 Aligned_cols=39 Identities=18% Similarity=0.203 Sum_probs=25.7
Q ss_pred CCCeEEEEeCCCccHHHHHHHH----HHCCccceeeccccHHHH
Q 031788 94 EEDRLVVGCQSGARSLHATADL----LGAGFKHVSNFGGGHMAW 133 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L----~~~G~~~v~~l~gG~~~w 133 (153)
+.++|++.|++|..+..++..+ .+.|++ +.+-..+....
T Consensus 2 ~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~-~~v~a~~~~~~ 44 (95)
T TIGR00853 2 NETNILLLCAAGMSTSLLVNKMNKAAEEYGVP-VKIAAGSYGAA 44 (95)
T ss_pred CccEEEEECCCchhHHHHHHHHHHHHHHCCCc-EEEEEecHHHH
Confidence 3578999999998766555554 467876 55555555443
No 111
>PTZ00110 helicase; Provisional
Probab=63.50 E-value=16 Score=30.96 Aligned_cols=39 Identities=13% Similarity=0.201 Sum_probs=32.3
Q ss_pred ccCCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHH
Q 031788 92 CKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 131 (153)
Q Consensus 92 ~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~ 131 (153)
...+.+++|+|++-..+..++..|...|+. +..+.|++.
T Consensus 374 ~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~-~~~ihg~~~ 412 (545)
T PTZ00110 374 MRDGDKILIFVETKKGADFLTKELRLDGWP-ALCIHGDKK 412 (545)
T ss_pred cccCCeEEEEecChHHHHHHHHHHHHcCCc-EEEEECCCc
Confidence 336788999999988899999999999987 567778753
No 112
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=63.41 E-value=12 Score=26.89 Aligned_cols=33 Identities=21% Similarity=0.203 Sum_probs=28.2
Q ss_pred CCCeEEEEeC---CCccHHHHHHHHHHCCccceeec
Q 031788 94 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNF 126 (153)
Q Consensus 94 ~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~~l 126 (153)
++++|+++++ +|.....+++.|.+.|...|+++
T Consensus 151 ~~~~vllvDDV~TTGaTl~~~~~~L~~~Ga~~V~~~ 186 (190)
T TIGR00201 151 QGRNIVLVDDVVTTGATLHEIARLLLELGAASVQVW 186 (190)
T ss_pred CCCEEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEE
Confidence 4678999988 77788899999999999888765
No 113
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=63.38 E-value=15 Score=24.85 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=29.2
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHH
Q 031788 94 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 131 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~ 131 (153)
++++++++. .|..+..++..|...|+.+++++.-...
T Consensus 11 ~~~~vlviG-aGg~ar~v~~~L~~~g~~~i~i~nRt~~ 47 (135)
T PF01488_consen 11 KGKRVLVIG-AGGAARAVAAALAALGAKEITIVNRTPE 47 (135)
T ss_dssp TTSEEEEES-SSHHHHHHHHHHHHTTSSEEEEEESSHH
T ss_pred CCCEEEEEC-CHHHHHHHHHHHHHcCCCEEEEEECCHH
Confidence 567777774 5778888899999999999988866544
No 114
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=63.26 E-value=15 Score=28.11 Aligned_cols=90 Identities=20% Similarity=0.220 Sum_probs=50.8
Q ss_pred eecHHHHHHHHh----CC-CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCC-hHHHHHHHhhccCCCeEEEEeC
Q 031788 30 TVDVRAAKNLLE----SG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKN-PDFLKKVRSLCKEEDRLVVGCQ 103 (153)
Q Consensus 30 ~i~~~~~~~~~~----~~-~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ivi~c~ 103 (153)
.++.+++.++++ -+ -.+|.|++..|.+...--|+..+-|-.-.+ ..+.. .+-...+...++++ +++++.
T Consensus 141 ~L~~~~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRdL---~tf~vd~~~~~~l~~~ip~~--~~~ise 215 (254)
T PF00218_consen 141 ILSDDQLEELLELAHSLGLEALVEVHNEEELERALEAGADIIGINNRDL---KTFEVDLNRTEELAPLIPKD--VIVISE 215 (254)
T ss_dssp GSGHHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBCT---TTCCBHTHHHHHHHCHSHTT--SEEEEE
T ss_pred hCCHHHHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCccc---cCcccChHHHHHHHhhCccc--eeEEee
Confidence 355566666664 24 478999999998763322332122111100 11111 13333444445544 677788
Q ss_pred CCccHHHHHHHHHHCCcccee
Q 031788 104 SGARSLHATADLLGAGFKHVS 124 (153)
Q Consensus 104 ~g~~a~~~~~~L~~~G~~~v~ 124 (153)
+|..+..-+..|...|++.+.
T Consensus 216 SGI~~~~d~~~l~~~G~davL 236 (254)
T PF00218_consen 216 SGIKTPEDARRLARAGADAVL 236 (254)
T ss_dssp SS-SSHHHHHHHCTTT-SEEE
T ss_pred cCCCCHHHHHHHHHCCCCEEE
Confidence 999999999999999999543
No 115
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=63.17 E-value=15 Score=23.89 Aligned_cols=33 Identities=24% Similarity=0.180 Sum_probs=27.5
Q ss_pred cCCCeEEEEeC---CCccHHHHHHHHHHCCccceee
Q 031788 93 KEEDRLVVGCQ---SGARSLHATADLLGAGFKHVSN 125 (153)
Q Consensus 93 ~~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~~ 125 (153)
.++++++++++ +|.....+.+.|++.|...+..
T Consensus 86 ~~gk~vliVDDvi~tG~Tl~~~~~~L~~~g~~~v~~ 121 (125)
T PF00156_consen 86 IKGKRVLIVDDVIDTGGTLKEAIELLKEAGAKVVGV 121 (125)
T ss_dssp GTTSEEEEEEEEESSSHHHHHHHHHHHHTTBSEEEE
T ss_pred ccceeEEEEeeeEcccHHHHHHHHHHHhCCCcEEEE
Confidence 47889999876 8888889999999999886654
No 116
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=63.01 E-value=15 Score=28.85 Aligned_cols=39 Identities=8% Similarity=0.038 Sum_probs=33.3
Q ss_pred ccCCCeEEEEeCCCccHHHHHHHHHHCCcc-ceeeccccH
Q 031788 92 CKEEDRLVVGCQSGARSLHATADLLGAGFK-HVSNFGGGH 130 (153)
Q Consensus 92 ~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~-~v~~l~gG~ 130 (153)
..++++++++|++-..+..++..|.+.|.+ ++..+.|++
T Consensus 219 ~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~ 258 (358)
T TIGR01587 219 IKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRF 258 (358)
T ss_pred hhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCC
Confidence 356789999999988899999999998874 688999986
No 117
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=62.99 E-value=18 Score=30.18 Aligned_cols=30 Identities=30% Similarity=0.386 Sum_probs=23.9
Q ss_pred CCeEEEEeCCCcc---HHHHHHHHHHCCccceee
Q 031788 95 EDRLVVGCQSGAR---SLHATADLLGAGFKHVSN 125 (153)
Q Consensus 95 ~~~ivi~c~~g~~---a~~~~~~L~~~G~~~v~~ 125 (153)
.++|+++|+.|.. +..+|++|...|++ |.+
T Consensus 59 ~~~VlVlcG~GNNGGDGlv~AR~L~~~G~~-V~v 91 (462)
T PLN03049 59 YRRVLALCGPGNNGGDGLVAARHLHHFGYK-PSI 91 (462)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCc-eEE
Confidence 3689999997654 66889999999997 543
No 118
>PTZ00102 disulphide isomerase; Provisional
Probab=62.12 E-value=52 Score=26.89 Aligned_cols=26 Identities=4% Similarity=0.054 Sum_probs=17.6
Q ss_pred CcceeecHHHHHHHHhCC-CeEEecCC
Q 031788 26 AEVITVDVRAAKNLLESG-YGYLDVRT 51 (153)
Q Consensus 26 ~~~~~i~~~~~~~~~~~~-~~iIDvR~ 51 (153)
..+..++.+.+.+.++++ .++|+.-.
T Consensus 32 ~~v~~l~~~~f~~~i~~~~~~lv~f~a 58 (477)
T PTZ00102 32 EHVTVLTDSTFDKFITENEIVLVKFYA 58 (477)
T ss_pred CCcEEcchhhHHHHHhcCCcEEEEEEC
Confidence 345678888888777654 67777643
No 119
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=61.97 E-value=13 Score=31.06 Aligned_cols=35 Identities=26% Similarity=0.372 Sum_probs=28.4
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHCCccceeecccc
Q 031788 94 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGG 129 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG 129 (153)
.+.+|+|+ +.|...-.+|.+|.+.|++++.++.|.
T Consensus 20 ~~~kIvII-GAG~AGLaAA~rLle~gf~~~~IlEa~ 54 (498)
T KOG0685|consen 20 GNAKIVII-GAGIAGLAAATRLLENGFIDVLILEAS 54 (498)
T ss_pred CCceEEEE-CCchHHHHHHHHHHHhCCceEEEEEec
Confidence 45568888 466677888999999999999999874
No 120
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=61.42 E-value=32 Score=20.40 Aligned_cols=36 Identities=19% Similarity=0.126 Sum_probs=27.7
Q ss_pred HHHHhhccCCCeEEEEeCCCccHHHHHHHHHHCCccc
Q 031788 86 KKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKH 122 (153)
Q Consensus 86 ~~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~ 122 (153)
..+.+ ...++.+.+.+++......+-.++...||+=
T Consensus 18 kal~~-l~~G~~l~V~~d~~~s~~ni~~~~~~~g~~v 53 (69)
T cd03422 18 EALPS-LKPGEILEVISDCPQSINNIPIDARNHGYKV 53 (69)
T ss_pred HHHHc-CCCCCEEEEEecCchHHHHHHHHHHHcCCEE
Confidence 34444 4778888888887777788889999999983
No 121
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=61.05 E-value=6.6 Score=31.24 Aligned_cols=37 Identities=14% Similarity=0.011 Sum_probs=29.3
Q ss_pred CcceeecHHHHHHHHh-------CCCeEEecCChhhhhcCCCCCc
Q 031788 26 AEVITVDVRAAKNLLE-------SGYGYLDVRTAEEFKEGHVDAA 63 (153)
Q Consensus 26 ~~~~~i~~~~~~~~~~-------~~~~iIDvR~~~e~~~ghi~ga 63 (153)
.....++++++.++++ .+..+||||.+. |+..++|+-
T Consensus 274 ~~~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~g 317 (339)
T PRK07688 274 PHKEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKDG 317 (339)
T ss_pred CCcCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcCC
Confidence 3456899999998883 347899999988 888888755
No 122
>PF02472 ExbD: Biopolymer transport protein ExbD/TolR; InterPro: IPR003400 This group of proteins are membrane bound transport proteins essential for ferric ion uptake in bacteria []. The family consists of ExbD, and TolR which are involved in TonB-dependent transport of various receptor bound substrates including colicins [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2JWL_A 2JWK_A 2PFU_A.
Probab=61.05 E-value=26 Score=23.17 Aligned_cols=44 Identities=20% Similarity=0.329 Sum_probs=25.4
Q ss_pred HHHHHHHhh--ccCCC-eEEEEeCCCcc---HHHHHHHHHHCCccceeec
Q 031788 83 DFLKKVRSL--CKEED-RLVVGCQSGAR---SLHATADLLGAGFKHVSNF 126 (153)
Q Consensus 83 ~~~~~~~~~--~~~~~-~ivi~c~~g~~---a~~~~~~L~~~G~~~v~~l 126 (153)
++.+.+.+. .+++. .|++.++.... -..+...++..|+.++.+.
T Consensus 77 ~L~~~l~~~~~~~~~~~~v~i~aD~~~~y~~vv~vl~~l~~~g~~~v~l~ 126 (130)
T PF02472_consen 77 ELEARLKELKQKNPDPVRVLIRADKDAPYQDVVDVLDALREAGFTKVSLA 126 (130)
T ss_dssp CHHHHHHHHCCC-TTS--EEEEE-TTS-HHHHHHHHHHHHHTT---EE-T
T ss_pred HHHHHHHHhhccCCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 677777776 34555 78888876654 3466777889999988754
No 123
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=60.89 E-value=20 Score=30.56 Aligned_cols=31 Identities=26% Similarity=0.325 Sum_probs=24.3
Q ss_pred CCeEEEEeCCCcc---HHHHHHHHHHCCccceeec
Q 031788 95 EDRLVVGCQSGAR---SLHATADLLGAGFKHVSNF 126 (153)
Q Consensus 95 ~~~ivi~c~~g~~---a~~~~~~L~~~G~~~v~~l 126 (153)
.++|+|+|+.|.. +..+|++|...||+ |.++
T Consensus 135 ~~~VlVlcGpGNNGGDGLVaAR~L~~~G~~-V~V~ 168 (544)
T PLN02918 135 YSRVLAICGPGNNGGDGLVAARHLHHFGYK-PFVC 168 (544)
T ss_pred CCEEEEEECCCcCHHHHHHHHHHHHHCCCc-eEEE
Confidence 3689999997754 66889999999997 5443
No 124
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=60.26 E-value=44 Score=22.06 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=26.4
Q ss_pred HHHHHHHhh---ccCCCeEEEEeC-CCccHHHHHH-HHHHCCccceeeccc
Q 031788 83 DFLKKVRSL---CKEEDRLVVGCQ-SGARSLHATA-DLLGAGFKHVSNFGG 128 (153)
Q Consensus 83 ~~~~~~~~~---~~~~~~ivi~c~-~g~~a~~~~~-~L~~~G~~~v~~l~g 128 (153)
+|.+++.+. ++.++.+++.++ -|+.-..++. .+.+ +++++++.|
T Consensus 43 ~~~~~l~~~i~~~~~~~~vivltDl~GGSp~n~a~~~~~~--~~~~~vIsG 91 (116)
T TIGR00824 43 TLQEKYNAALADLDTEEEVLFLVDIFGGSPYNAAARIIVD--KPHMDVIAG 91 (116)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHhh--cCCEEEEEe
Confidence 566666554 466778888888 4444344443 3333 457887776
No 125
>PLN02645 phosphoglycolate phosphatase
Probab=60.19 E-value=50 Score=25.70 Aligned_cols=72 Identities=14% Similarity=0.137 Sum_probs=38.2
Q ss_pred ceeecHHHHHHHHhC-CCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCCCc
Q 031788 28 VITVDVRAAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGA 106 (153)
Q Consensus 28 ~~~i~~~~~~~~~~~-~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~g~ 106 (153)
.+.++..++.+++.+ ..+++|+=.---....-+||+ . ++.+.+.+ .+.++++..+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~D~DGtl~~~~~~~~ga--~----------------e~l~~lr~---~g~~~~~~TN~~~ 71 (311)
T PLN02645 13 AQLLTLENADELIDSVETFIFDCDGVIWKGDKLIEGV--P----------------ETLDMLRS---MGKKLVFVTNNST 71 (311)
T ss_pred cccCCHHHHHHHHHhCCEEEEeCcCCeEeCCccCcCH--H----------------HHHHHHHH---CCCEEEEEeCCCC
Confidence 345666777777764 467788743221111224544 1 44444443 4666666666443
Q ss_pred c-HHHHHHHHHHCCc
Q 031788 107 R-SLHATADLLGAGF 120 (153)
Q Consensus 107 ~-a~~~~~~L~~~G~ 120 (153)
+ .....+.|..+|+
T Consensus 72 ~~~~~~~~~l~~lGi 86 (311)
T PLN02645 72 KSRAQYGKKFESLGL 86 (311)
T ss_pred CCHHHHHHHHHHCCC
Confidence 3 3455566666664
No 126
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=59.56 E-value=33 Score=28.18 Aligned_cols=47 Identities=13% Similarity=0.163 Sum_probs=36.8
Q ss_pred HHHHHHHhhccCCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHHH
Q 031788 83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMA 132 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~ 132 (153)
.+.-.+.. ..+.+++++|+++..+...+-.|+..||. .-.|.|-+..
T Consensus 290 yLV~ll~e--~~g~s~iVF~~t~~tt~~la~~L~~lg~~-a~~LhGqmsq 336 (476)
T KOG0330|consen 290 YLVYLLNE--LAGNSVIVFCNTCNTTRFLALLLRNLGFQ-AIPLHGQMSQ 336 (476)
T ss_pred hHHHHHHh--hcCCcEEEEEeccchHHHHHHHHHhcCcc-eecccchhhH
Confidence 44444444 36799999999999999999999999998 5677776654
No 127
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=58.94 E-value=7.6 Score=28.82 Aligned_cols=56 Identities=23% Similarity=0.404 Sum_probs=35.3
Q ss_pred ChHHHHHHHhh--ccCCCeEEEE-eCCCccHHHHH--------------------HHHHHCCccceeeccc-cHHHHHhC
Q 031788 81 NPDFLKKVRSL--CKEEDRLVVG-CQSGARSLHAT--------------------ADLLGAGFKHVSNFGG-GHMAWVQN 136 (153)
Q Consensus 81 ~~~~~~~~~~~--~~~~~~ivi~-c~~g~~a~~~~--------------------~~L~~~G~~~v~~l~g-G~~~w~~~ 136 (153)
.+.....+.+. +.++..|.-+ |++|..++..+ +.|..+||.||.+..| |..+|.+.
T Consensus 57 ~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 57 APHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEE 136 (209)
T ss_pred CcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCC
Confidence 33444544444 5667776655 45665544333 3488899999976655 78888764
No 128
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=58.84 E-value=25 Score=24.52 Aligned_cols=39 Identities=18% Similarity=0.178 Sum_probs=30.5
Q ss_pred ccCCCeEEEEeC-CCc---cHHHHHHHHHHCCccceeeccccH
Q 031788 92 CKEEDRLVVGCQ-SGA---RSLHATADLLGAGFKHVSNFGGGH 130 (153)
Q Consensus 92 ~~~~~~ivi~c~-~g~---~a~~~~~~L~~~G~~~v~~l~gG~ 130 (153)
+..+-.+|.+|. ++. -.+.+.+.|++.|.+.+.++.||.
T Consensus 60 ~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~GGv 102 (143)
T COG2185 60 VEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVGGV 102 (143)
T ss_pred HhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEeecCc
Confidence 356888899988 332 257888899999999999888874
No 129
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=58.60 E-value=18 Score=31.02 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=32.7
Q ss_pred cCCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHH
Q 031788 93 KEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 131 (153)
Q Consensus 93 ~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~ 131 (153)
.+++..+|||++-..+..++..|.+.|+. +..+.+|+.
T Consensus 234 ~~~~~~IIFc~tr~~~e~la~~L~~~g~~-v~~~Ha~l~ 271 (607)
T PRK11057 234 QRGKSGIIYCNSRAKVEDTAARLQSRGIS-AAAYHAGLD 271 (607)
T ss_pred cCCCCEEEEECcHHHHHHHHHHHHhCCCC-EEEecCCCC
Confidence 46788999999988899999999999987 778888863
No 130
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=58.31 E-value=37 Score=25.03 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=35.2
Q ss_pred cCCCeEEEEeC---CCccHHHHHHHHHHCCccce---eecc---ccHHHHHhCCCceec
Q 031788 93 KEEDRLVVGCQ---SGARSLHATADLLGAGFKHV---SNFG---GGHMAWVQNGLKVKA 142 (153)
Q Consensus 93 ~~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v---~~l~---gG~~~w~~~g~~~~~ 142 (153)
.++++++++++ +|.....+++.|++.|..-+ .+++ ||.......|.|+..
T Consensus 116 ~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~~vv~v~vlvdr~~~~~~~l~~~gi~v~s 174 (206)
T PRK13809 116 TPGQTCLVINDMVSSGKSIIETAVALEEEGLVVREALVFLDRQKGACQPLGPQGIKLSS 174 (206)
T ss_pred CCCCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEECcccHHHHHHhcCCCEEE
Confidence 57899999988 77888899999999997532 2333 444444446776653
No 131
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=58.27 E-value=22 Score=25.92 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=20.6
Q ss_pred eecHHHHHHHHhCCCeEEecCChhh
Q 031788 30 TVDVRAAKNLLESGYGYLDVRTAEE 54 (153)
Q Consensus 30 ~i~~~~~~~~~~~~~~iIDvR~~~e 54 (153)
-|+.+|..+.+..++-||||.++.|
T Consensus 7 Pin~eEA~eAieGGAdIiDVKNP~E 31 (235)
T COG1891 7 PINREEAIEAIEGGADIIDVKNPAE 31 (235)
T ss_pred cCCHHHHHHHhhCCCceEeccCccc
Confidence 3667788788878899999999887
No 132
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=57.09 E-value=32 Score=24.19 Aligned_cols=47 Identities=21% Similarity=0.170 Sum_probs=31.7
Q ss_pred HHHHHHHhhccCCCeEEEEeCCCccHHHHHHHHHHCCccceeecccc
Q 031788 83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGG 129 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG 129 (153)
++.+.+.+.+.++..++++.........+...|.+.||+....-..|
T Consensus 121 ~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~ 167 (179)
T TIGR00537 121 RFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAERG 167 (179)
T ss_pred HHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEEee
Confidence 34555555567777777765544457888999999999865555444
No 133
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=56.93 E-value=28 Score=30.01 Aligned_cols=36 Identities=11% Similarity=0.222 Sum_probs=28.3
Q ss_pred HHHHHHHHHHCCccceeeccccHHHHHhCCCceecCC
Q 031788 108 SLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKARE 144 (153)
Q Consensus 108 a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~ 144 (153)
+...|++++++|++ |-.+......|.++..++....
T Consensus 312 giTiAEYfRd~G~~-Vllm~DStSR~AeAlREIS~~l 347 (586)
T PRK04192 312 GITIAEYYRDMGYD-VLLMADSTSRWAEALREISGRL 347 (586)
T ss_pred HHHHHHHHHHCCCC-EEEEecChHHHHHHHHHHHHhc
Confidence 34667889999976 8999999999999876665333
No 134
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=56.78 E-value=81 Score=27.87 Aligned_cols=89 Identities=20% Similarity=0.196 Sum_probs=52.9
Q ss_pred ecHHHHHHHHh---C-C-CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCCC
Q 031788 31 VDVRAAKNLLE---S-G-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSG 105 (153)
Q Consensus 31 i~~~~~~~~~~---~-~-~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~g 105 (153)
++.+++.++++ + + -.+|.|+++.|.+..--.|+..+-|-.-.+ .+--.+.+-...+...++ +.+++++.+|
T Consensus 144 L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL--~tf~vd~~~t~~L~~~ip--~~~~~VsESG 219 (695)
T PRK13802 144 LDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNL--KDLKVDVNKYNELAADLP--DDVIKVAESG 219 (695)
T ss_pred cCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCC--ccceeCHHHHHHHHhhCC--CCcEEEEcCC
Confidence 44456666654 2 3 478999999998764333442222211111 000111233444555554 3568888999
Q ss_pred ccHHHHHHHHHHCCccce
Q 031788 106 ARSLHATADLLGAGFKHV 123 (153)
Q Consensus 106 ~~a~~~~~~L~~~G~~~v 123 (153)
..+..-+..|...|++-+
T Consensus 220 I~~~~d~~~l~~~G~dav 237 (695)
T PRK13802 220 VFGAVEVEDYARAGADAV 237 (695)
T ss_pred CCCHHHHHHHHHCCCCEE
Confidence 999999999999999854
No 135
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=56.73 E-value=15 Score=24.03 Aligned_cols=36 Identities=11% Similarity=0.084 Sum_probs=23.6
Q ss_pred CeEEEEeCCCccHHHHHHHH----HHCCccceeeccccHHH
Q 031788 96 DRLVVGCQSGARSLHATADL----LGAGFKHVSNFGGGHMA 132 (153)
Q Consensus 96 ~~ivi~c~~g~~a~~~~~~L----~~~G~~~v~~l~gG~~~ 132 (153)
++|++.|++|..+..++..+ .+.|++ +.+-..+...
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~-~~i~a~~~~e 41 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKD-IEVDAITATE 41 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCc-eEEEEecHHH
Confidence 46899999998766666554 567875 5444444443
No 136
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=55.90 E-value=20 Score=23.94 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=13.9
Q ss_pred eEEEEeCCC-ccHHHHHHHHHHCCccceeecccc
Q 031788 97 RLVVGCQSG-ARSLHATADLLGAGFKHVSNFGGG 129 (153)
Q Consensus 97 ~ivi~c~~g-~~a~~~~~~L~~~G~~~v~~l~gG 129 (153)
+|+++|.+. -||+.|...++.++-+++.+...|
T Consensus 2 ~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG 35 (126)
T TIGR02689 2 KVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAG 35 (126)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 345555422 244554444444432333333333
No 137
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=55.64 E-value=12 Score=25.22 Aligned_cols=35 Identities=23% Similarity=0.123 Sum_probs=17.0
Q ss_pred EEEEeCCC-ccHHHHHHHHHHCCccceeeccccHHH
Q 031788 98 LVVGCQSG-ARSLHATADLLGAGFKHVSNFGGGHMA 132 (153)
Q Consensus 98 ivi~c~~g-~~a~~~~~~L~~~G~~~v~~l~gG~~~ 132 (153)
|+++|.+. -||+.|...|+...-.++.+...|..+
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~~~ 36 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAIVGDRVKIDSAGTGA 36 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHhcCCCEEEEcCcccC
Confidence 34556422 355665555555432335555555443
No 138
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=55.62 E-value=21 Score=30.38 Aligned_cols=37 Identities=11% Similarity=0.113 Sum_probs=31.3
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHH
Q 031788 94 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 131 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~ 131 (153)
.+.+.++||++-..+..++..|...|+. +..++||+.
T Consensus 223 ~~~~~IIf~~sr~~~e~la~~L~~~g~~-~~~~H~~l~ 259 (591)
T TIGR01389 223 RGQSGIIYASSRKKVEELAERLESQGIS-ALAYHAGLS 259 (591)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCCCC-EEEEECCCC
Confidence 4678999999988899999999999987 677888764
No 139
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=55.32 E-value=18 Score=23.50 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=24.7
Q ss_pred eEEEEeCCCccHHHHHHH----HHHCCccceeeccccHHHH
Q 031788 97 RLVVGCQSGARSLHATAD----LLGAGFKHVSNFGGGHMAW 133 (153)
Q Consensus 97 ~ivi~c~~g~~a~~~~~~----L~~~G~~~v~~l~gG~~~w 133 (153)
+|++.|++|..+..+++. +++.|++ +.+...+....
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~-~~i~a~~~~e~ 41 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVP-LEAAAGAYGSH 41 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCc-EEEEEeeHHHH
Confidence 488999988777666665 4567875 65655565543
No 140
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=55.17 E-value=30 Score=28.05 Aligned_cols=36 Identities=19% Similarity=0.213 Sum_probs=31.2
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccH
Q 031788 94 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGH 130 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~ 130 (153)
....++++|++...+..++..|...|+. +..+.|++
T Consensus 254 ~~~~~lVF~~t~~~~~~l~~~L~~~g~~-v~~lhg~~ 289 (423)
T PRK04837 254 WPDRAIIFANTKHRCEEIWGHLAADGHR-VGLLTGDV 289 (423)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhCCCc-EEEecCCC
Confidence 4577999999988899999999999986 88888875
No 141
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=55.12 E-value=19 Score=22.17 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=17.3
Q ss_pred eEEEEeCCCccHHHHH-H----HHHHCCcc
Q 031788 97 RLVVGCQSGARSLHAT-A----DLLGAGFK 121 (153)
Q Consensus 97 ~ivi~c~~g~~a~~~~-~----~L~~~G~~ 121 (153)
+|++.|++|..+...+ . .+.+.|++
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~ 30 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIE 30 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTEC
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCc
Confidence 5899999997654433 4 45577876
No 142
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=55.11 E-value=28 Score=28.60 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=31.6
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHH
Q 031788 94 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 131 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~ 131 (153)
....++++|++-..+..++..|...|+. +..+.|++.
T Consensus 241 ~~~~~lVF~~t~~~~~~l~~~L~~~~~~-v~~~hg~~~ 277 (460)
T PRK11776 241 QPESCVVFCNTKKECQEVADALNAQGFS-ALALHGDLE 277 (460)
T ss_pred CCCceEEEECCHHHHHHHHHHHHhCCCc-EEEEeCCCC
Confidence 4567899999988999999999999986 788888764
No 143
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=54.51 E-value=45 Score=24.74 Aligned_cols=37 Identities=14% Similarity=0.124 Sum_probs=22.3
Q ss_pred HHHHHHHhhccCCCeEEEEeCCCccHHHHHHHHHHCCccc
Q 031788 83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKH 122 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~ 122 (153)
++.+++.+ .+.++++..++..+.....+.|..+|++.
T Consensus 31 e~L~~L~~---~G~~~~ivTN~~~~~~~~~~~L~~~gl~~ 67 (242)
T TIGR01459 31 QNLNKIIA---QGKPVYFVSNSPRNIFSLHKTLKSLGINA 67 (242)
T ss_pred HHHHHHHH---CCCEEEEEeCCCCChHHHHHHHHHCCCCc
Confidence 45555543 46777777665544444556777777763
No 144
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=54.31 E-value=49 Score=23.67 Aligned_cols=51 Identities=20% Similarity=0.243 Sum_probs=34.4
Q ss_pred ccCCCeEEEEeC---CCccHHHHHHHHHHCCcccee---ecc---ccHHHHHhCCCceec
Q 031788 92 CKEEDRLVVGCQ---SGARSLHATADLLGAGFKHVS---NFG---GGHMAWVQNGLKVKA 142 (153)
Q Consensus 92 ~~~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~---~l~---gG~~~w~~~g~~~~~ 142 (153)
+.++++++++.+ +|.....+.+.|++.|..-+. +++ ||-+...+.|+|+..
T Consensus 104 ~~~g~~VlIVDDvitTG~Tl~~~~~~l~~~Ga~vv~~~vlvdr~~~~~~~l~~~g~~v~s 163 (176)
T PRK13812 104 LDEGEEVVVLEDIATTGQSAVDAVEALREAGATVNRVLVVVDREEGARENLADHDVELEA 163 (176)
T ss_pred CCCcCEEEEEEEeeCCCHHHHHHHHHHHHCCCeEEEEEEEEECCcchHHHHHhcCCcEEE
Confidence 357899999988 777788899999999975321 121 333333445777654
No 145
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=54.05 E-value=33 Score=27.83 Aligned_cols=37 Identities=22% Similarity=0.200 Sum_probs=31.8
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHH
Q 031788 94 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 131 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~ 131 (153)
...+++++|++-..+..++..|...|+. +..+.|++.
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~l~g~~~ 280 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWLRKAGIN-CCYLEGEMV 280 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHHHhCCCC-EEEecCCCC
Confidence 5678999999988899999999999987 778888763
No 146
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=53.69 E-value=37 Score=29.21 Aligned_cols=33 Identities=9% Similarity=0.280 Sum_probs=27.0
Q ss_pred HHHHHHHHHCCccceeeccccHHHHHhCCCceec
Q 031788 109 LHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKA 142 (153)
Q Consensus 109 ~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~ 142 (153)
...|++++++|++ |-.+......|.++..++..
T Consensus 308 ~TiAEYfRD~G~~-Vllm~DS~sR~AeAlREIs~ 340 (578)
T TIGR01043 308 ITIAEYFRDMGYD-VALMADSTSRWAEAMREISG 340 (578)
T ss_pred HHHHHHHHHCCCC-EEEEecChhHHHHHHHHHHH
Confidence 4578899999986 88999999999988666553
No 147
>PF02863 Arg_repressor_C: Arginine repressor, C-terminal domain; InterPro: IPR020899 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1B4B_B 1B4A_A 3V4G_A 1F9N_F 2P5M_A 1XXA_E 1XXC_C 1XXB_F 3LAJ_D 3BUE_D ....
Probab=53.67 E-value=24 Score=21.17 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=22.7
Q ss_pred ccCCCeEEEEeCCCccHHHHHHHHHH
Q 031788 92 CKEEDRLVVGCQSGARSLHATADLLG 117 (153)
Q Consensus 92 ~~~~~~ivi~c~~g~~a~~~~~~L~~ 117 (153)
+..+++|.++|.++..+....+++++
T Consensus 44 IAgdDTilvi~~~~~~a~~l~~~l~~ 69 (70)
T PF02863_consen 44 IAGDDTILVICRSEEDAEELEEKLKE 69 (70)
T ss_dssp EEESSEEEEEESTTSHHHHHHHHHHT
T ss_pred EeCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 56789999999999999998888875
No 148
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=53.37 E-value=21 Score=22.12 Aligned_cols=36 Identities=19% Similarity=0.348 Sum_probs=20.5
Q ss_pred CeEEEEeCCCccHHHH-HH----HHHHCCccceeeccccHHH
Q 031788 96 DRLVVGCQSGARSLHA-TA----DLLGAGFKHVSNFGGGHMA 132 (153)
Q Consensus 96 ~~ivi~c~~g~~a~~~-~~----~L~~~G~~~v~~l~gG~~~ 132 (153)
++|+++|++|..+.+. .. .+.+.|.. +.+-..+...
T Consensus 1 ~kilvvCg~G~gtS~ml~~ki~~~~~~~~~~-~~v~~~~~~~ 41 (87)
T cd05567 1 KKIVFACDAGMGSSAMGASVLRKKLKKAGLE-IPVTNSAIDE 41 (87)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHCCCc-eEEEEcchhh
Confidence 4689999998754433 33 44556654 3333334433
No 149
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=53.12 E-value=17 Score=21.53 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=16.2
Q ss_pred eEEEEeCCCc-cHHHHHHHHH----HCCcc
Q 031788 97 RLVVGCQSGA-RSLHATADLL----GAGFK 121 (153)
Q Consensus 97 ~ivi~c~~g~-~a~~~~~~L~----~~G~~ 121 (153)
+++++|++|. .+..+...|+ +.++.
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~~~~~~~~~ 30 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEKAAKELGIE 30 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHHHHHHCCCe
Confidence 4789999884 5555555554 45654
No 150
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=52.97 E-value=25 Score=29.29 Aligned_cols=36 Identities=25% Similarity=0.149 Sum_probs=31.0
Q ss_pred CCCeEEEEeC---CCccHHHHHHHHHHCCccceeecccc
Q 031788 94 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNFGGG 129 (153)
Q Consensus 94 ~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~~l~gG 129 (153)
++|+|+++++ .|..+.+..+.|+++|-++|++-.+.
T Consensus 347 ~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvrias 385 (470)
T COG0034 347 KGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIAS 385 (470)
T ss_pred CCCeEEEEccccccCccHHHHHHHHHHhCCCEEEEEecC
Confidence 6899999998 56779999999999999998876554
No 151
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=52.88 E-value=22 Score=27.85 Aligned_cols=31 Identities=19% Similarity=0.161 Sum_probs=26.2
Q ss_pred CCCeEEEEeC---CCccHHHHHHHHHHCCcccee
Q 031788 94 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVS 124 (153)
Q Consensus 94 ~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~ 124 (153)
+++.++++++ +|..-..+++.|++.|-.+|+
T Consensus 210 ~Gr~vIIVDDIidTG~Tl~~aa~~Lk~~GA~~V~ 243 (301)
T PRK07199 210 AGRTPVLVDDIVSTGRTLIEAARQLRAAGAASPD 243 (301)
T ss_pred CCCEEEEEecccCcHHHHHHHHHHHHHCCCcEEE
Confidence 5788999866 777788999999999998765
No 152
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=52.85 E-value=80 Score=23.53 Aligned_cols=28 Identities=21% Similarity=0.220 Sum_probs=20.8
Q ss_pred CCeEEEEeCCCccHHHHHHH-HHHCCccc
Q 031788 95 EDRLVVGCQSGARSLHATAD-LLGAGFKH 122 (153)
Q Consensus 95 ~~~ivi~c~~g~~a~~~~~~-L~~~G~~~ 122 (153)
.+..+++|.+...+...+.. .++.||+-
T Consensus 147 ~~~~v~vagDD~~Ak~~v~~L~~~iG~~~ 175 (211)
T COG2085 147 GRRDVLVAGDDAEAKAVVAELAEDIGFRP 175 (211)
T ss_pred CceeEEEecCcHHHHHHHHHHHHhcCcce
Confidence 68899999988887655544 45688863
No 153
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=52.78 E-value=28 Score=31.15 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=33.3
Q ss_pred ccCCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHH
Q 031788 92 CKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 131 (153)
Q Consensus 92 ~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~ 131 (153)
..++++++|+|++...+...+..|.+.|++ +..+.|...
T Consensus 425 ~~~~~pvLIf~~t~~~se~l~~~L~~~gi~-~~~L~~~~~ 463 (790)
T PRK09200 425 HETGRPVLIGTGSIEQSETFSKLLDEAGIP-HNLLNAKNA 463 (790)
T ss_pred HhcCCCEEEEeCcHHHHHHHHHHHHHCCCC-EEEecCCcc
Confidence 357899999999999999999999999997 677887743
No 154
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=52.76 E-value=19 Score=23.02 Aligned_cols=36 Identities=8% Similarity=0.135 Sum_probs=23.8
Q ss_pred eEEEEeCCCccHHHHHHHH----HHCCccceeeccccHHHH
Q 031788 97 RLVVGCQSGARSLHATADL----LGAGFKHVSNFGGGHMAW 133 (153)
Q Consensus 97 ~ivi~c~~g~~a~~~~~~L----~~~G~~~v~~l~gG~~~w 133 (153)
+|++.|++|..+..++..+ .+.|++ +.+-..+....
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~-~~v~~~~~~~~ 40 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGID-AEIEAVPESEL 40 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCc-eEEEEecHHHH
Confidence 4889999998766666554 466876 55555555443
No 155
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=52.20 E-value=28 Score=28.60 Aligned_cols=37 Identities=14% Similarity=0.185 Sum_probs=30.9
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHH
Q 031788 94 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 131 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~ 131 (153)
....++|||++-..+..+++.|...|+. +..+.|++.
T Consensus 244 ~~~~~lVF~~t~~~~~~l~~~L~~~g~~-~~~lhg~~~ 280 (456)
T PRK10590 244 NWQQVLVFTRTKHGANHLAEQLNKDGIR-SAAIHGNKS 280 (456)
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHCCCC-EEEEECCCC
Confidence 4467999999988889999999999986 777888763
No 156
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=51.01 E-value=67 Score=20.91 Aligned_cols=46 Identities=22% Similarity=0.223 Sum_probs=25.5
Q ss_pred HHHHHHHhh---ccCCCeEEEEeCCCccHHHHHHHHHHCCccceeeccc
Q 031788 83 DFLKKVRSL---CKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGG 128 (153)
Q Consensus 83 ~~~~~~~~~---~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~g 128 (153)
++.+++.+. .++++.+++.|+-+.-+............++++++.|
T Consensus 42 ~~~~~l~~~i~~~~~~~~vlil~Dl~ggsp~n~a~~~~~~~~~~~vi~G 90 (116)
T PF03610_consen 42 DFEEKLEEAIEELDEGDGVLILTDLGGGSPFNEAARLLLDKPNIRVISG 90 (116)
T ss_dssp HHHHHHHHHHHHCCTTSEEEEEESSTTSHHHHHHHHHHCTSTTEEEEES
T ss_pred HHHHHHHHHHHhccCCCcEEEEeeCCCCccchHHHHHhccCCCEEEEec
Confidence 455555554 4778999999993333332222222234455666665
No 157
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=50.92 E-value=26 Score=22.90 Aligned_cols=27 Identities=7% Similarity=0.155 Sum_probs=19.7
Q ss_pred CCeEEEEeCCCccHHHHHHHH----HHCCcc
Q 031788 95 EDRLVVGCQSGARSLHATADL----LGAGFK 121 (153)
Q Consensus 95 ~~~ivi~c~~g~~a~~~~~~L----~~~G~~ 121 (153)
.++|++.|+.|..+...+..+ .+.|++
T Consensus 3 ~kkIllvC~~G~sTSll~~km~~~~~~~gi~ 33 (106)
T PRK10499 3 KKHIYLFCSAGMSTSLLVSKMRAQAEKYEVP 33 (106)
T ss_pred CCEEEEECCCCccHHHHHHHHHHHHHHCCCC
Confidence 357999999999887777444 456665
No 158
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=50.85 E-value=34 Score=28.80 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=31.1
Q ss_pred CCeEEEEeCCCccHHHHHHHHHHCCccceeeccccH
Q 031788 95 EDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGH 130 (153)
Q Consensus 95 ~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~ 130 (153)
...+|++|++...+..+++.|...||. +..++|++
T Consensus 273 ~~~~IVF~~tk~~~~~l~~~l~~~g~~-~~~lhG~l 307 (513)
T COG0513 273 EGRVIVFVRTKRLVEELAESLRKRGFK-VAALHGDL 307 (513)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHCCCe-EEEecCCC
Confidence 335999999999999999999999988 89999985
No 159
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=50.77 E-value=33 Score=29.31 Aligned_cols=38 Identities=21% Similarity=0.204 Sum_probs=32.4
Q ss_pred cCCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHH
Q 031788 93 KEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 131 (153)
Q Consensus 93 ~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~ 131 (153)
..+..++|+|++...+..+++.|...|+. +..+.|++.
T Consensus 255 ~~~~k~LVF~nt~~~ae~l~~~L~~~g~~-v~~lhg~l~ 292 (572)
T PRK04537 255 SEGARTMVFVNTKAFVERVARTLERHGYR-VGVLSGDVP 292 (572)
T ss_pred ccCCcEEEEeCCHHHHHHHHHHHHHcCCC-EEEEeCCCC
Confidence 45678999999988999999999999986 888888753
No 160
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=50.62 E-value=63 Score=20.62 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=9.7
Q ss_pred eEEEEeCCCccHHHHHHHHHHCCcc
Q 031788 97 RLVVGCQSGARSLHATADLLGAGFK 121 (153)
Q Consensus 97 ~ivi~c~~g~~a~~~~~~L~~~G~~ 121 (153)
++++++.+ ....+.+...|+.
T Consensus 23 ~vvvid~d----~~~~~~~~~~~~~ 43 (116)
T PF02254_consen 23 DVVVIDRD----PERVEELREEGVE 43 (116)
T ss_dssp EEEEEESS----HHHHHHHHHTTSE
T ss_pred EEEEEECC----cHHHHHHHhcccc
Confidence 55555543 2224445555533
No 161
>PRK11018 hypothetical protein; Provisional
Probab=50.35 E-value=57 Score=19.90 Aligned_cols=38 Identities=16% Similarity=0.113 Sum_probs=28.2
Q ss_pred HHHHHHhhccCCCeEEEEeCCCccHHHHHHHHHHCCccc
Q 031788 84 FLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKH 122 (153)
Q Consensus 84 ~~~~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~ 122 (153)
....+.+ ++.+..+.+.+++......+...++..||+=
T Consensus 25 ~kk~l~~-l~~G~~L~V~~d~~~a~~di~~~~~~~G~~v 62 (78)
T PRK11018 25 TLEALPQ-LKKGEILEVVSDCPQSINNIPLDARNHGYTV 62 (78)
T ss_pred HHHHHHh-CCCCCEEEEEeCCccHHHHHHHHHHHcCCEE
Confidence 3334444 4778888888887777778888999999983
No 162
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=49.85 E-value=36 Score=30.47 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=33.9
Q ss_pred ccCCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHH
Q 031788 92 CKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 131 (153)
Q Consensus 92 ~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~ 131 (153)
..++++++|.|.+-..+..++..|.+.|++ ...|.+...
T Consensus 437 ~~~g~pvLI~t~si~~se~ls~~L~~~gi~-~~~Lna~~~ 475 (796)
T PRK12906 437 HAKGQPVLVGTVAIESSERLSHLLDEAGIP-HAVLNAKNH 475 (796)
T ss_pred HhCCCCEEEEeCcHHHHHHHHHHHHHCCCC-eeEecCCcH
Confidence 568999999999999999999999999988 567877754
No 163
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=49.82 E-value=58 Score=22.00 Aligned_cols=39 Identities=26% Similarity=0.419 Sum_probs=27.1
Q ss_pred HHHHHHHhh--ccCCCeEEEEeCCCccH--HHHHHHHHHCCcc
Q 031788 83 DFLKKVRSL--CKEEDRLVVGCQSGARS--LHATADLLGAGFK 121 (153)
Q Consensus 83 ~~~~~~~~~--~~~~~~ivi~c~~g~~a--~~~~~~L~~~G~~ 121 (153)
.|.+.+... +.+++-+++++.+|... -.++++.++.|..
T Consensus 90 ~~~~~~~~~~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~ 132 (138)
T PF13580_consen 90 GFARQLLALYDIRPGDVLIVISNSGNSPNVIEAAEEAKERGMK 132 (138)
T ss_dssp THHHHHHHHTT--TT-EEEEEESSS-SHHHHHHHHHHHHTT-E
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE
Confidence 677777766 78999999999988764 4677888889976
No 164
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=49.75 E-value=17 Score=23.89 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=22.8
Q ss_pred EEEeCCCccHHHHHHHHHHCCccceeeccc
Q 031788 99 VVGCQSGARSLHATADLLGAGFKHVSNFGG 128 (153)
Q Consensus 99 vi~c~~g~~a~~~~~~L~~~G~~~v~~l~g 128 (153)
|++.++|..+.++.+.++++|++-|.++..
T Consensus 5 vLIanrGeia~r~~ra~r~~Gi~tv~v~s~ 34 (110)
T PF00289_consen 5 VLIANRGEIAVRIIRALRELGIETVAVNSN 34 (110)
T ss_dssp EEESS-HHHHHHHHHHHHHTTSEEEEEEEG
T ss_pred EEEECCCHHHHHHHHHHHHhCCcceeccCc
Confidence 455578888999999999999987665543
No 165
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=49.62 E-value=38 Score=26.52 Aligned_cols=45 Identities=22% Similarity=0.089 Sum_probs=32.8
Q ss_pred CCCeEEEEeC---CCccHHHHHHHHHHCCccceeecc-------ccHHHHHhCCC
Q 031788 94 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNFG-------GGHMAWVQNGL 138 (153)
Q Consensus 94 ~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~~l~-------gG~~~w~~~g~ 138 (153)
+++.++++++ +|..-..+++.|++.|-.+++.+. ++++.+.+.+.
T Consensus 200 ~gr~viIVDDIi~TG~Tl~~aa~~Lk~~Ga~~I~~~~tH~v~~~~a~~~l~~~~~ 254 (304)
T PRK03092 200 EGRTCVLVDDMIDTGGTIAGAVRALKEAGAKDVIIAATHGVLSGPAAERLKNCGA 254 (304)
T ss_pred CCCEEEEEccccCcHHHHHHHHHHHHhcCCCeEEEEEEcccCChHHHHHHHHCCC
Confidence 5677888866 777778999999999998876443 23456665554
No 166
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=49.60 E-value=30 Score=25.15 Aligned_cols=32 Identities=19% Similarity=0.170 Sum_probs=25.8
Q ss_pred CCCeEEEEeC---CCccHHHHHHHHHHCCccceee
Q 031788 94 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSN 125 (153)
Q Consensus 94 ~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~~ 125 (153)
+++..|++++ +|..-..+++.|++.|-..|+.
T Consensus 82 ~gk~~IIvDDiIdtg~Tl~~aA~~Lk~~GA~~V~~ 116 (184)
T PF14572_consen 82 KGKICIIVDDIIDTGGTLIKAAELLKERGAKKVYA 116 (184)
T ss_dssp TTSEEEEEEEEESSTHHHHHHHHHHHHTTESEEEE
T ss_pred cCCeEeeecccccchHHHHHHHHHHHHcCCCEEEE
Confidence 5677888755 7777889999999999888864
No 167
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=49.56 E-value=32 Score=30.54 Aligned_cols=42 Identities=14% Similarity=0.144 Sum_probs=34.3
Q ss_pred HHHhhccCCCeEEEEeCCCccHHHHHHHHHHCCccceeecccc
Q 031788 87 KVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGG 129 (153)
Q Consensus 87 ~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG 129 (153)
.+.+...+++++++.|.+-..+..++..|.+.|+. ...|.+.
T Consensus 397 ~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~-~~~Lna~ 438 (745)
T TIGR00963 397 EIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIP-HNVLNAK 438 (745)
T ss_pred HHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCC-eEEeeCC
Confidence 33333678999999999988999999999999998 4567666
No 168
>PRK10126 tyrosine phosphatase; Provisional
Probab=49.35 E-value=21 Score=24.57 Aligned_cols=36 Identities=22% Similarity=0.172 Sum_probs=22.5
Q ss_pred CeEEEEeCCC-ccHHHHHHHHHHCCccceeeccccHHH
Q 031788 96 DRLVVGCQSG-ARSLHATADLLGAGFKHVSNFGGGHMA 132 (153)
Q Consensus 96 ~~ivi~c~~g-~~a~~~~~~L~~~G~~~v~~l~gG~~~ 132 (153)
++|+++|.+. -||+.|...++..+ ..+.+...|..+
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~-~~~~v~SAG~~~ 39 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYH-PELKVESAGLGA 39 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhc-CCeEEEeeeccC
Confidence 4688888644 37888777777765 235455555543
No 169
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=48.89 E-value=39 Score=26.57 Aligned_cols=77 Identities=18% Similarity=0.261 Sum_probs=36.0
Q ss_pred cHHHHHHHHhC-CCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEE---eCCCcc
Q 031788 32 DVRAAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVG---CQSGAR 107 (153)
Q Consensus 32 ~~~~~~~~~~~-~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~---c~~g~~ 107 (153)
+-.++.+.-++ +..++|||.+ .+.. ++-.. ...+ -+.+.|.++ |..|.+
T Consensus 75 ddpel~~~A~~~g~~i~DvR~p-~~~~-~~~~g-----------------------~~~~--~~~~rv~~vGTDcavGK~ 127 (301)
T PF07755_consen 75 DDPELAAAAKKNGVRIIDVRKP-PKDL-PVASG-----------------------RIRE--VKAKRVLTVGTDCAVGKM 127 (301)
T ss_dssp CHHHHHCCHHCCT--EEETTS---SS------S-----------------------GGGG---SSEEEEEEESSSSSSHH
T ss_pred cCHHHHHHHHHcCCeEeeccCC-Cccc-ccccC-----------------------cccc--CCCCEEEEEccCccccHH
Confidence 34556665554 5899999997 4333 32211 0001 134445555 334444
Q ss_pred --HHHHHHHHHHCCccceeeccccHHHHHhC
Q 031788 108 --SLHATADLLGAGFKHVSNFGGGHMAWVQN 136 (153)
Q Consensus 108 --a~~~~~~L~~~G~~~v~~l~gG~~~w~~~ 136 (153)
+....+.|++.|++ +..+.=|=-+|...
T Consensus 128 tTal~L~~~l~~~G~~-a~fvaTGQTGimia 157 (301)
T PF07755_consen 128 TTALELRRALRERGIN-AGFVATGQTGIMIA 157 (301)
T ss_dssp HHHHHHHHHHHHTT---EEEEE-SHHHHHCH
T ss_pred HHHHHHHHHHHHcCCC-ceEEecCCceEEEe
Confidence 45667788899988 55554455555543
No 170
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=48.83 E-value=57 Score=23.08 Aligned_cols=47 Identities=17% Similarity=0.084 Sum_probs=32.5
Q ss_pred HHHHHhhccCCCeEEEEeCCCc--cHHHHHHHHH---HCCccceeeccccHHH
Q 031788 85 LKKVRSLCKEEDRLVVGCQSGA--RSLHATADLL---GAGFKHVSNFGGGHMA 132 (153)
Q Consensus 85 ~~~~~~~~~~~~~ivi~c~~g~--~a~~~~~~L~---~~G~~~v~~l~gG~~~ 132 (153)
.+.+.+.++++..+|+.+-.|. .|..+|..|. ..| .++.++.||-.+
T Consensus 57 ~~~il~~i~~~~~vi~Ld~~Gk~~sSe~fA~~l~~~~~~G-~~i~f~IGG~~G 108 (155)
T COG1576 57 GEAILAAIPKGSYVVLLDIRGKALSSEEFADFLERLRDDG-RDISFLIGGADG 108 (155)
T ss_pred HHHHHHhcCCCCeEEEEecCCCcCChHHHHHHHHHHHhcC-CeEEEEEeCccc
Confidence 3344444677777777766664 5777777765 467 889999998755
No 171
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=48.80 E-value=33 Score=32.08 Aligned_cols=37 Identities=16% Similarity=0.173 Sum_probs=32.0
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHH
Q 031788 94 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 131 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~ 131 (153)
.+...||||.+-..+..++..|...|+. +..|.||+.
T Consensus 679 ~~esgIIYC~SRke~E~LAe~L~~~Gik-a~~YHAGLs 715 (1195)
T PLN03137 679 FDECGIIYCLSRMDCEKVAERLQEFGHK-AAFYHGSMD 715 (1195)
T ss_pred cCCCceeEeCchhHHHHHHHHHHHCCCC-eeeeeCCCC
Confidence 3567899999988899999999999997 888999973
No 172
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=48.79 E-value=1.1e+02 Score=23.37 Aligned_cols=89 Identities=21% Similarity=0.190 Sum_probs=47.7
Q ss_pred cHHHHHHHHh---C-C-CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCCCc
Q 031788 32 DVRAAKNLLE---S-G-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGA 106 (153)
Q Consensus 32 ~~~~~~~~~~---~-~-~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~g~ 106 (153)
+.+++.++++ . + ..++||.+..|.....=-|+..+.+-. .+....-.+.+...++...++. .+.+++-+|.
T Consensus 145 ~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gadiIgin~--rdl~~~~~d~~~~~~l~~~~p~--~~~vIaegGI 220 (260)
T PRK00278 145 DDEQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAPLIGINN--RNLKTFEVDLETTERLAPLIPS--DRLVVSESGI 220 (260)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEECC--CCcccccCCHHHHHHHHHhCCC--CCEEEEEeCC
Confidence 3455555554 2 3 578999998887543222332222110 0000000112334444443322 3467777888
Q ss_pred cHHHHHHHHHHCCcccee
Q 031788 107 RSLHATADLLGAGFKHVS 124 (153)
Q Consensus 107 ~a~~~~~~L~~~G~~~v~ 124 (153)
.+..-+..+.+.|++.|.
T Consensus 221 ~t~ed~~~~~~~Gad~vl 238 (260)
T PRK00278 221 FTPEDLKRLAKAGADAVL 238 (260)
T ss_pred CCHHHHHHHHHcCCCEEE
Confidence 888888899999998553
No 173
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=48.54 E-value=16 Score=27.84 Aligned_cols=45 Identities=11% Similarity=0.151 Sum_probs=35.6
Q ss_pred HHHHHHHhhc-cCCCeEEEEeCCCccHHHHHHHHHHCCccceeecc
Q 031788 83 DFLKKVRSLC-KEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFG 127 (153)
Q Consensus 83 ~~~~~~~~~~-~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~ 127 (153)
+.++.+.+.+ .++..+++|++.=.+.++..+.|++.||.++..+.
T Consensus 126 ~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~i~~~E 171 (247)
T PF08704_consen 126 EAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTDIETVE 171 (247)
T ss_dssp GGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCeeeEEEE
Confidence 4555565556 68899999998877889999999999998765543
No 174
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=47.88 E-value=25 Score=24.18 Aligned_cols=37 Identities=19% Similarity=0.123 Sum_probs=22.3
Q ss_pred CeEEEEeCCC-ccHHHHHHHHHHCCccceeeccccHHHH
Q 031788 96 DRLVVGCQSG-ARSLHATADLLGAGFKHVSNFGGGHMAW 133 (153)
Q Consensus 96 ~~ivi~c~~g-~~a~~~~~~L~~~G~~~v~~l~gG~~~w 133 (153)
++|+++|.+. -||+.|...|+... .++.+...|..+|
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~-~~~~v~SaG~~~~ 40 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRL-PGVKVKSAGVHGL 40 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhc-CCeEEEcccccCC
Confidence 4688888633 47777777777654 2355555555443
No 175
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=47.85 E-value=56 Score=19.09 Aligned_cols=39 Identities=15% Similarity=0.020 Sum_probs=28.2
Q ss_pred HHHHHHhhccCCCeEEEEeCCCccHHHHHHHHHHCCccce
Q 031788 84 FLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHV 123 (153)
Q Consensus 84 ~~~~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v 123 (153)
..+.+.+ .+.+..+.+..++......+..++...||.-+
T Consensus 17 ~~~~l~~-l~~G~~l~v~~d~~~~~~di~~~~~~~g~~~~ 55 (70)
T PF01206_consen 17 AKKALKE-LPPGEVLEVLVDDPAAVEDIPRWCEENGYEVV 55 (70)
T ss_dssp HHHHHHT-SGTT-EEEEEESSTTHHHHHHHHHHHHTEEEE
T ss_pred HHHHHHh-cCCCCEEEEEECCccHHHHHHHHHHHCCCEEE
Confidence 3344444 47888888888877777888999999999733
No 176
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=47.67 E-value=32 Score=27.17 Aligned_cols=31 Identities=19% Similarity=0.086 Sum_probs=25.9
Q ss_pred CCCeEEEEeC---CCccHHHHHHHHHHCCcccee
Q 031788 94 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVS 124 (153)
Q Consensus 94 ~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~ 124 (153)
++++++++++ +|..-..+++.|++.|-..|+
T Consensus 216 ~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~ 249 (319)
T PRK04923 216 QGKTCVLVDDLVDTAGTLCAAAAALKQRGALKVV 249 (319)
T ss_pred CCCEEEEEecccCchHHHHHHHHHHHHCCCCEEE
Confidence 5678888866 777788999999999998875
No 177
>PF06480 FtsH_ext: FtsH Extracellular; InterPro: IPR011546 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in the FtsH family of proteins that include FtsH a membrane-bound ATP-dependent protease universally conserved in prokaryotes []. The FtsH peptidases, which belong to MEROPS peptidase family M41 (clan MA(E)), efficiently degrade proteins that have a low thermodynamic stability - e.g. they lack robust unfoldase activity. This feature may be key and implies that this could be a criterion for degrading a protein. In Oenococcus oeni (Leuconostoc oenos) FtsH is involved in protection against environmental stress [], and shows increased expression under heat or osmotic stress. These two lines of evidence suggest that it is a fundamental prokaryotic self-protection mechanism that checks if proteins are correctly folded. The precise function of this N-terminal region is unclear. ; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0016021 integral to membrane; PDB: 2LNA_A.
Probab=47.53 E-value=14 Score=23.24 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=13.6
Q ss_pred hhcCCcceeecHHHHHHHHhCC
Q 031788 22 RSSGAEVITVDVRAAKNLLESG 43 (153)
Q Consensus 22 ~~~~~~~~~i~~~~~~~~~~~~ 43 (153)
.........++..++.+.++++
T Consensus 21 ~~~~~~~~~i~YS~F~~~l~~g 42 (110)
T PF06480_consen 21 NSNNSQTKEISYSEFLQMLEKG 42 (110)
T ss_dssp -----SSEE--HHHHHHTGGGT
T ss_pred hcccCCCcEECHHHHHHHHHcC
Confidence 5566788999999999999876
No 178
>PRK11595 DNA utilization protein GntX; Provisional
Probab=47.50 E-value=32 Score=25.57 Aligned_cols=33 Identities=15% Similarity=0.214 Sum_probs=28.0
Q ss_pred CCCeEEEEeC---CCccHHHHHHHHHHCCccceeec
Q 031788 94 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNF 126 (153)
Q Consensus 94 ~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~~l 126 (153)
++++|+++++ +|.....+++.|.+.|...|+.+
T Consensus 186 ~~~~vllvDDv~tTG~Tl~~~~~~L~~~g~~~V~~~ 221 (227)
T PRK11595 186 QGQHMAIVDDVVTTGSTVAEIAQLLLRNGAASVQVW 221 (227)
T ss_pred CCCEEEEEeeeecchHHHHHHHHHHHHcCCcEEEEE
Confidence 5678999988 77788899999999999888765
No 179
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=47.36 E-value=28 Score=24.90 Aligned_cols=33 Identities=15% Similarity=0.071 Sum_probs=27.0
Q ss_pred CCCeEEEEeC---CCccHHHHHHHHHHCCccceeec
Q 031788 94 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNF 126 (153)
Q Consensus 94 ~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~~l 126 (153)
++++++++++ +|.....+++.|++.|-.+|+.+
T Consensus 96 ~gk~VLIVDDIidTG~Tl~~~~~~Lk~~Ga~~V~~a 131 (181)
T PRK09162 96 KGRTVLVVDDILDEGHTLAAIRDRCLEMGAAEVYSA 131 (181)
T ss_pred CCCEEEEEccccCcHHHHHHHHHHHHhCCCCEEEEE
Confidence 6788999977 77777888999999998887655
No 180
>PF10903 DUF2691: Protein of unknown function (DUF2691); InterPro: IPR020216 This entry represents a group of uncharacterised proteins.
Probab=47.24 E-value=1e+02 Score=21.81 Aligned_cols=86 Identities=15% Similarity=0.268 Sum_probs=52.7
Q ss_pred CcceeecHHHHHHHHhCC---CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh---ccCCCeEE
Q 031788 26 AEVITVDVRAAKNLLESG---YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL---CKEEDRLV 99 (153)
Q Consensus 26 ~~~~~i~~~~~~~~~~~~---~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iv 99 (153)
.....++-.++.++++++ .+++|.+.- ..+..+.. ++- + ++|.+.=-++ +-.+.-|-
T Consensus 52 ~~~~~~~G~~lk~~l~~~~YYlIF~dLkAf---p~~~~~~~--I~t-y-----------eeFl~S~CelvllIvD~~yv~ 114 (153)
T PF10903_consen 52 EDEEIMTGSELKKLLKDNDYYLIFLDLKAF---PKGETVTE--INT-Y-----------EEFLNSKCELVLLIVDSSYVS 114 (153)
T ss_pred CCceeeehHHHHHHhhcCCeEEEEEEeeeC---cCCCCccc--ccc-H-----------HHHhcCCceEEEEEEeccEEE
Confidence 344568888898988864 355777652 22222211 210 1 1333321111 45666788
Q ss_pred EEeCCCccHHHHHHHHHHCCccceeeccc
Q 031788 100 VGCQSGARSLHATADLLGAGFKHVSNFGG 128 (153)
Q Consensus 100 i~c~~g~~a~~~~~~L~~~G~~~v~~l~g 128 (153)
+||.....-....+.....||.|+..+..
T Consensus 115 IycKd~~~i~~lyqna~~~gy~~i~yITd 143 (153)
T PF10903_consen 115 IYCKDQEIIESLYQNAQNQGYENIEYITD 143 (153)
T ss_pred EEEcCHHHHHHHHHHHHHCCceEEEEEec
Confidence 88887777788888889999999987754
No 181
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=47.14 E-value=38 Score=30.69 Aligned_cols=45 Identities=18% Similarity=0.093 Sum_probs=36.4
Q ss_pred HHHHhhccCCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHH
Q 031788 86 KKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 131 (153)
Q Consensus 86 ~~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~ 131 (153)
+.+.+...+++|++|.|.+-..+..++..|.+.|+. ..+|.+...
T Consensus 435 ~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~-h~vLnak~~ 479 (896)
T PRK13104 435 EDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIK-HQVLNAKFH 479 (896)
T ss_pred HHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCC-eEeecCCCC
Confidence 334333679999999999988999999999999998 567777654
No 182
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=46.73 E-value=75 Score=22.49 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=33.3
Q ss_pred CCCeEEEEeC---CCccHHHHHHHHHHCCccce---eecc---ccHHHHHhCCCceec
Q 031788 94 EEDRLVVGCQ---SGARSLHATADLLGAGFKHV---SNFG---GGHMAWVQNGLKVKA 142 (153)
Q Consensus 94 ~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v---~~l~---gG~~~w~~~g~~~~~ 142 (153)
++++++++++ +|.....+.+.|++.|-+-+ .+++ |+-+...+.|.|+.+
T Consensus 103 ~g~~VlIVDDvi~TG~T~~~~~~~l~~~Ga~v~~~~~~vdr~~g~~~~l~~~gv~~~s 160 (170)
T PRK13811 103 KGKRVLLVEDVTTSGGSALYGIEQLRAAGAVVDDVVTVVDREQGAEELLAELGITLTP 160 (170)
T ss_pred CCCEEEEEEecccccHHHHHHHHHHHHCCCeEEEEEEEEECCccHHHHHHhcCCcEEE
Confidence 7899999987 77788899999999997532 1222 223333446777653
No 183
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=46.61 E-value=52 Score=20.19 Aligned_cols=17 Identities=29% Similarity=0.546 Sum_probs=12.5
Q ss_pred CCCeEEEEeCCCc-cHHH
Q 031788 94 EEDRLVVGCQSGA-RSLH 110 (153)
Q Consensus 94 ~~~~ivi~c~~g~-~a~~ 110 (153)
.+.+|+++|..|. |+..
T Consensus 38 ~~~pvlVHC~~G~gRtg~ 55 (105)
T smart00012 38 SSGPVVVHCSAGVGRTGT 55 (105)
T ss_pred CCCCEEEEeCCCCChhhH
Confidence 3679999999664 6553
No 184
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=46.61 E-value=52 Score=20.19 Aligned_cols=17 Identities=29% Similarity=0.546 Sum_probs=12.5
Q ss_pred CCCeEEEEeCCCc-cHHH
Q 031788 94 EEDRLVVGCQSGA-RSLH 110 (153)
Q Consensus 94 ~~~~ivi~c~~g~-~a~~ 110 (153)
.+.+|+++|..|. |+..
T Consensus 38 ~~~pvlVHC~~G~gRtg~ 55 (105)
T smart00404 38 SSGPVVVHCSAGVGRTGT 55 (105)
T ss_pred CCCCEEEEeCCCCChhhH
Confidence 3679999999664 6553
No 185
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=46.51 E-value=32 Score=28.74 Aligned_cols=36 Identities=25% Similarity=0.127 Sum_probs=30.3
Q ss_pred CCCeEEEEeC---CCccHHHHHHHHHHCCccceeecccc
Q 031788 94 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNFGGG 129 (153)
Q Consensus 94 ~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~~l~gG 129 (153)
++++|+++++ +|.....+++.|++.|-..|+++...
T Consensus 347 ~gk~VlLVDDvittGtTl~~~~~~Lk~aGA~eV~v~i~s 385 (471)
T PRK06781 347 EGKRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRIAS 385 (471)
T ss_pred CCceEEEEeceeccchHHHHHHHHHHHcCCcEEEEEECC
Confidence 5789999988 67778899999999999988877653
No 186
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=46.30 E-value=74 Score=23.10 Aligned_cols=51 Identities=20% Similarity=0.238 Sum_probs=35.7
Q ss_pred ccCCCeEEEEeC---CCccHHHHHHHHHHCCccce--e-ec----cccHHHHHhCCCceec
Q 031788 92 CKEEDRLVVGCQ---SGARSLHATADLLGAGFKHV--S-NF----GGGHMAWVQNGLKVKA 142 (153)
Q Consensus 92 ~~~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v--~-~l----~gG~~~w~~~g~~~~~ 142 (153)
+.++++++++.+ +|.....+.+.+++.|.+-+ . ++ .||.....+.|.|+.+
T Consensus 114 l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~Vvgv~~lvd~~~~~g~~~l~~~gvpv~s 174 (191)
T TIGR01744 114 LSDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKIAGIGIVIEKSFQNGRQELVELGYRVES 174 (191)
T ss_pred CCCcCEEEEEEehhccChHHHHHHHHHHHCCCEEEEEEEEEEecCccHHHHHHhcCCcEEE
Confidence 468999999988 77778888899999997632 2 22 2455555556777643
No 187
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=45.98 E-value=32 Score=28.93 Aligned_cols=35 Identities=17% Similarity=0.076 Sum_probs=29.5
Q ss_pred CCCeEEEEeC---CCccHHHHHHHHHHCCccceeeccc
Q 031788 94 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNFGG 128 (153)
Q Consensus 94 ~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~~l~g 128 (153)
++++|+++++ +|.....+++.|++.|-..|+++.-
T Consensus 357 ~gK~VlLVDDvitTGaTl~~~~~~L~~aGA~~V~v~v~ 394 (501)
T PRK09246 357 KGKNVLLVDDSIVRGTTSEQIVQMAREAGAKKVYFASA 394 (501)
T ss_pred cCCeEEEEeccccccHHHHHHHHHHHHcCCCEEEEEEE
Confidence 5789999988 6777888999999999998876654
No 188
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=45.89 E-value=86 Score=25.08 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=17.4
Q ss_pred HHHHHHHHhC-CCeEEecCChhhhhc
Q 031788 33 VRAAKNLLES-GYGYLDVRTAEEFKE 57 (153)
Q Consensus 33 ~~~~~~~~~~-~~~iIDvR~~~e~~~ 57 (153)
..++...+.+ +..+||+|+..+|..
T Consensus 154 KT~iL~~L~~~~~~vlDlE~~aehrG 179 (345)
T PRK11784 154 KTELLQALANAGAQVLDLEGLANHRG 179 (345)
T ss_pred HHHHHHHHHhcCCeEEECCchhhhcc
Confidence 3444454443 578999999999864
No 189
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=45.76 E-value=75 Score=23.99 Aligned_cols=43 Identities=19% Similarity=0.149 Sum_probs=25.1
Q ss_pred HHHHHHHhhc---cCCCeEEEEeCCCcc-HHHH----HHHHHHCCccceee
Q 031788 83 DFLKKVRSLC---KEEDRLVVGCQSGAR-SLHA----TADLLGAGFKHVSN 125 (153)
Q Consensus 83 ~~~~~~~~~~---~~~~~ivi~c~~g~~-a~~~----~~~L~~~G~~~v~~ 125 (153)
.+.+.+...+ ++++.+|++|-+... +..+ -..|.+.||+||++
T Consensus 122 ~~v~aik~~~ppl~k~e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v 172 (265)
T COG4822 122 ICVEAIKDQIPPLNKDEILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFV 172 (265)
T ss_pred HHHHHHHHhcCCcCcCeEEEEEecCCCccHHHHHHHHHHHHHhcCCCceEE
Confidence 3444454443 477889999974433 2222 22356789988763
No 190
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=45.57 E-value=39 Score=21.66 Aligned_cols=26 Identities=19% Similarity=0.348 Sum_probs=19.0
Q ss_pred CeEEEEeCCCccHH-----HHHHHHHHCCcc
Q 031788 96 DRLVVGCQSGARSL-----HATADLLGAGFK 121 (153)
Q Consensus 96 ~~ivi~c~~g~~a~-----~~~~~L~~~G~~ 121 (153)
.+|++.|+.|..+. .+-+.|+++|++
T Consensus 2 ~KIL~aCG~GvgSS~~ik~kve~~l~~~gi~ 32 (93)
T COG3414 2 IKILAACGNGVGSSTMIKMKVEEVLKELGID 32 (93)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHHcCCC
Confidence 46899999997544 334468889995
No 191
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=45.46 E-value=46 Score=29.66 Aligned_cols=40 Identities=15% Similarity=0.026 Sum_probs=33.5
Q ss_pred ccCCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHHH
Q 031788 92 CKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMA 132 (153)
Q Consensus 92 ~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~ 132 (153)
..++++++|.|++-..+......|...|+. +..|.|....
T Consensus 421 ~~~~~pvLIft~s~~~se~ls~~L~~~gi~-~~~L~a~~~~ 460 (762)
T TIGR03714 421 HETGQPVLLITGSVEMSEIYSELLLREGIP-HNLLNAQNAA 460 (762)
T ss_pred hhCCCCEEEEECcHHHHHHHHHHHHHCCCC-EEEecCCChH
Confidence 467899999999988899999999999998 5677776553
No 192
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=45.24 E-value=40 Score=27.65 Aligned_cols=33 Identities=30% Similarity=0.199 Sum_probs=28.3
Q ss_pred CCCeEEEEeC---CCccHHHHHHHHHHCCccceeec
Q 031788 94 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNF 126 (153)
Q Consensus 94 ~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~~l 126 (153)
.+++|+++++ .|..+....+.|++.|-++|++-
T Consensus 355 ~GKrvvlVDDSIVRGtTs~~IVkmlreaGAkeVh~r 390 (474)
T KOG0572|consen 355 EGKRVVLVDDSIVRGTTSSPIVKMLREAGAKEVHIR 390 (474)
T ss_pred CCceEEEEecceeccCchHHHHHHHHHcCCcEEEEE
Confidence 6899999988 56678999999999999988753
No 193
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=44.67 E-value=65 Score=18.97 Aligned_cols=39 Identities=23% Similarity=0.154 Sum_probs=28.2
Q ss_pred HHHHHHhhccCCCeEEEEeCCCccHHHHHHHHHHCCccce
Q 031788 84 FLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHV 123 (153)
Q Consensus 84 ~~~~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v 123 (153)
....+.+ .+.+..+.+..++......+..+++..||+=+
T Consensus 16 ~k~~l~~-l~~G~~l~V~~dd~~s~~di~~~~~~~g~~~~ 54 (69)
T cd03423 16 LHKKVRK-MKPGDTLLVLATDPSTTRDIPKFCTFLGHELL 54 (69)
T ss_pred HHHHHHc-CCCCCEEEEEeCCCchHHHHHHHHHHcCCEEE
Confidence 3334444 46788888887777777888999999999843
No 194
>PRK11024 colicin uptake protein TolR; Provisional
Probab=44.63 E-value=65 Score=21.97 Aligned_cols=44 Identities=18% Similarity=0.248 Sum_probs=29.2
Q ss_pred HHHHHHHhh--ccCCCeEEEEeCCCcc---HHHHHHHHHHCCccceeec
Q 031788 83 DFLKKVRSL--CKEEDRLVVGCQSGAR---SLHATADLLGAGFKHVSNF 126 (153)
Q Consensus 83 ~~~~~~~~~--~~~~~~ivi~c~~g~~---a~~~~~~L~~~G~~~v~~l 126 (153)
++...+... .+++..+++.++.... -..+...+++.|+.++.+.
T Consensus 89 ~L~~~l~~~~~~~~~~~V~i~aD~~~~~~~vv~vmd~~k~aG~~~v~l~ 137 (141)
T PRK11024 89 QVVAEAKSRFKANPKTVFLIGGAKDVPYDEIIKALNLLHSAGVKSVGLM 137 (141)
T ss_pred HHHHHHHHHHhhCCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 555555554 3566778887765533 4466778889999988754
No 195
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=44.56 E-value=53 Score=20.24 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=20.9
Q ss_pred CCeEEEEeCCC--ccHHHHHHHHHHCCccce
Q 031788 95 EDRLVVGCQSG--ARSLHATADLLGAGFKHV 123 (153)
Q Consensus 95 ~~~ivi~c~~g--~~a~~~~~~L~~~G~~~v 123 (153)
+-+|-++-.++ ..+.+++..|+..||..+
T Consensus 3 ~v~V~VlNgt~~~GlA~~~a~~L~~~Gf~v~ 33 (90)
T PF13399_consen 3 DVRVEVLNGTGVSGLAARVADALRNRGFTVV 33 (90)
T ss_pred ceEEEEEECcCCcCHHHHHHHHHHHCCCcee
Confidence 34566675555 357899999999999753
No 196
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=44.53 E-value=42 Score=20.89 Aligned_cols=34 Identities=18% Similarity=0.169 Sum_probs=24.6
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccH
Q 031788 94 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGH 130 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~ 130 (153)
.+.||++.- ..........|...+..+++++ ||.
T Consensus 49 ~~~PIll~~--~~l~~~~~~~l~~~~~~~v~ii-Gg~ 82 (92)
T PF04122_consen 49 NNAPILLVN--NSLPSSVKAFLKSLNIKKVYII-GGE 82 (92)
T ss_pred cCCeEEEEC--CCCCHHHHHHHHHcCCCEEEEE-CCC
Confidence 456666654 4445778888998899999888 654
No 197
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=44.27 E-value=64 Score=20.05 Aligned_cols=41 Identities=7% Similarity=-0.043 Sum_probs=26.6
Q ss_pred CCeEEEEeCCCccHHHHHHHHHHCCccc-eeeccccHHHHHh
Q 031788 95 EDRLVVGCQSGARSLHATADLLGAGFKH-VSNFGGGHMAWVQ 135 (153)
Q Consensus 95 ~~~ivi~c~~g~~a~~~~~~L~~~G~~~-v~~l~gG~~~w~~ 135 (153)
++++.++.+.|...+.+..+|.+.+++- ...+.+.+...++
T Consensus 2 skp~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKr 43 (85)
T COG4545 2 SKPKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKR 43 (85)
T ss_pred CCceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHH
Confidence 3566777778888888888888887652 2344455554443
No 198
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=44.25 E-value=63 Score=26.19 Aligned_cols=33 Identities=9% Similarity=0.273 Sum_probs=26.1
Q ss_pred HHHHHHHHHHCCccceeeccccHHHHHhCCCcee
Q 031788 108 SLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVK 141 (153)
Q Consensus 108 a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~ 141 (153)
+...|++++++|++ |-++......|.++..++.
T Consensus 242 a~tiAEYfrd~G~d-Vll~~Ds~tR~A~A~REIs 274 (369)
T cd01134 242 GITIAEYFRDMGYN-VALMADSTSRWAEALREIS 274 (369)
T ss_pred HHHHHHHHHHcCCC-EEEEEcChhHHHHHHHHHH
Confidence 34567889999975 8888889999998866554
No 199
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=43.86 E-value=68 Score=18.92 Aligned_cols=38 Identities=16% Similarity=0.122 Sum_probs=27.9
Q ss_pred HHHHHhhccCCCeEEEEeCCCccHHHHHHHHHHCCccce
Q 031788 85 LKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHV 123 (153)
Q Consensus 85 ~~~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v 123 (153)
.+.+.+ +..+..+.+.++.......+..+++..||+=+
T Consensus 17 kkal~~-l~~G~~l~V~~d~~~a~~di~~~~~~~G~~~~ 54 (69)
T cd03420 17 KKEIDK-LQDGEQLEVKASDPGFARDAQAWCKSTGNTLI 54 (69)
T ss_pred HHHHHc-CCCCCEEEEEECCccHHHHHHHHHHHcCCEEE
Confidence 334444 46788888888777777888889999999843
No 200
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=43.24 E-value=1.6e+02 Score=28.53 Aligned_cols=49 Identities=24% Similarity=0.445 Sum_probs=33.0
Q ss_pred ccCCCeEEEEeCCCccHHHHHHHHHHCCccce-----eeccccHHH-----HHhCCCce
Q 031788 92 CKEEDRLVVGCQSGARSLHATADLLGAGFKHV-----SNFGGGHMA-----WVQNGLKV 140 (153)
Q Consensus 92 ~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v-----~~l~gG~~~-----w~~~g~~~ 140 (153)
.++.+..|+..+-|...-..+++|-..|-... .-+.-||++ |.+.|..+
T Consensus 1765 ~hpeksYii~GGLGGFGLELaqWLi~RGar~lVLtSRsGirtGYQa~~vrrWr~~GVqV 1823 (2376)
T KOG1202|consen 1765 CHPEKSYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSGIRTGYQALMVRRWRRRGVQV 1823 (2376)
T ss_pred cCccceEEEeccccchhHHHHHHHHhcCceEEEEeccccchhhHHHHHHHHHHhcCeEE
Confidence 56777778887777777788888888876543 123335654 77777654
No 201
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=43.10 E-value=1e+02 Score=22.27 Aligned_cols=51 Identities=22% Similarity=0.160 Sum_probs=34.6
Q ss_pred ccCCCeEEEEeC---CCccHHHHHHHHHHCCccce--e-ecc---ccHHHHHhCCCceec
Q 031788 92 CKEEDRLVVGCQ---SGARSLHATADLLGAGFKHV--S-NFG---GGHMAWVQNGLKVKA 142 (153)
Q Consensus 92 ~~~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v--~-~l~---gG~~~w~~~g~~~~~ 142 (153)
+.++++|+++++ +|.....+.+.+++.|..-+ . +++ ||-+...+.|.|+..
T Consensus 119 ~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V~~v~vlvdr~~g~~~~l~~~gi~~~s 178 (187)
T PRK13810 119 LKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYIKYVITVVDREEGAEENLKEADVELVP 178 (187)
T ss_pred CCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEEEEEEEEEECCcChHHHHHHcCCcEEE
Confidence 468999999988 77788888999999997532 1 222 233444445766643
No 202
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=42.90 E-value=38 Score=20.80 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=16.7
Q ss_pred CeEEEEeCCCccHH-HHHH----HHHHCCcc
Q 031788 96 DRLVVGCQSGARSL-HATA----DLLGAGFK 121 (153)
Q Consensus 96 ~~ivi~c~~g~~a~-~~~~----~L~~~G~~ 121 (153)
.+++++|++|..+. .... .+.+.|+.
T Consensus 1 ~~ilivC~~G~~tS~~l~~~i~~~~~~~~i~ 31 (89)
T cd05566 1 KKILVACGTGVATSTVVASKVKELLKENGID 31 (89)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHCCCc
Confidence 36899999997543 4444 44556664
No 203
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=42.82 E-value=1.8e+02 Score=23.40 Aligned_cols=89 Identities=20% Similarity=0.206 Sum_probs=50.9
Q ss_pred ecHHHHHHHHh---C-C-CeEEecCChhhhhcC-CCCCcceeCccccccCCCCCCCC-hHHHHHHHh-----hccCCCeE
Q 031788 31 VDVRAAKNLLE---S-G-YGYLDVRTAEEFKEG-HVDAAKIFNIPYMFNTPEGRVKN-PDFLKKVRS-----LCKEEDRL 98 (153)
Q Consensus 31 i~~~~~~~~~~---~-~-~~iIDvR~~~e~~~g-hi~ga~~i~ip~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~i 98 (153)
++.+++.++++ + + -.+|.|+++.|.+.. .+.|+..+-|-.-.+ ..+.. .+-...+.. .++ .+.+
T Consensus 214 L~~~~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIGINNRdL---~Tf~vDl~~t~~L~~~~~~~~i~-~~~~ 289 (338)
T PLN02460 214 LPDLDIKYMLKICKSLGMAALIEVHDEREMDRVLGIEGVELIGINNRSL---ETFEVDISNTKKLLEGERGEQIR-EKGI 289 (338)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCCCC---CcceECHHHHHHHhhhccccccC-CCCe
Confidence 34455655554 2 4 478999999998753 233442222211101 11111 122223332 232 2457
Q ss_pred EEEeCCCccHHHHHHHHHHCCccce
Q 031788 99 VVGCQSGARSLHATADLLGAGFKHV 123 (153)
Q Consensus 99 vi~c~~g~~a~~~~~~L~~~G~~~v 123 (153)
++++.+|..+..-..+|...|++-|
T Consensus 290 ~~VsESGI~t~~Dv~~l~~~GadAv 314 (338)
T PLN02460 290 IVVGESGLFTPDDVAYVQNAGVKAV 314 (338)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCEE
Confidence 8888999999999999999999854
No 204
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=42.66 E-value=39 Score=26.69 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=26.3
Q ss_pred CCCeEEEEeC---CCccHHHHHHHHHHCCcccee
Q 031788 94 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVS 124 (153)
Q Consensus 94 ~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~ 124 (153)
++++++++++ +|..-..+++.|++.|-..|+
T Consensus 216 ~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~ 249 (320)
T PRK02269 216 KGKKCILIDDMIDTAGTICHAADALAEAGATEVY 249 (320)
T ss_pred CCCEEEEEeeecCcHHHHHHHHHHHHHCCCCEEE
Confidence 6788999876 777788999999999998875
No 205
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=42.42 E-value=1.5e+02 Score=22.68 Aligned_cols=89 Identities=18% Similarity=0.158 Sum_probs=50.0
Q ss_pred eecHHHHHHHHh---C-C-CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCC
Q 031788 30 TVDVRAAKNLLE---S-G-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQS 104 (153)
Q Consensus 30 ~i~~~~~~~~~~---~-~-~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~ 104 (153)
.++.+++.+++. + + -.+|.|++..|.+...-.|+..+-|-. -+..+--.+.+-...+...+++ .+++++.+
T Consensus 134 ~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINn--RdL~t~~vd~~~~~~L~~~ip~--~~~~IsES 209 (247)
T PRK13957 134 ILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINT--RDLDTFQIHQNLVEEVAAFLPP--NIVKVGES 209 (247)
T ss_pred hCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeC--CCCccceECHHHHHHHHhhCCC--CcEEEEcC
Confidence 345566666664 2 3 478999999999764434442222221 1111111112333445555543 35777889
Q ss_pred CccHHHHHHHHHHCCccce
Q 031788 105 GARSLHATADLLGAGFKHV 123 (153)
Q Consensus 105 g~~a~~~~~~L~~~G~~~v 123 (153)
|..+..-+.++... ++-+
T Consensus 210 GI~t~~d~~~l~~~-~dav 227 (247)
T PRK13957 210 GIESRSDLDKFRKL-VDAA 227 (247)
T ss_pred CCCCHHHHHHHHHh-CCEE
Confidence 99888777778775 7643
No 206
>PRK13530 arsenate reductase; Provisional
Probab=42.32 E-value=49 Score=22.40 Aligned_cols=35 Identities=14% Similarity=0.006 Sum_probs=18.6
Q ss_pred CeEEEEeCCC-ccHHHHHHHHHHCCccceeeccccH
Q 031788 96 DRLVVGCQSG-ARSLHATADLLGAGFKHVSNFGGGH 130 (153)
Q Consensus 96 ~~ivi~c~~g-~~a~~~~~~L~~~G~~~v~~l~gG~ 130 (153)
++|+++|.+. -||+.+...++.++-+++.+...|.
T Consensus 4 ~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~ 39 (133)
T PRK13530 4 KTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGI 39 (133)
T ss_pred CEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCC
Confidence 4567777533 3666666555554323455555554
No 207
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=42.28 E-value=31 Score=28.23 Aligned_cols=39 Identities=21% Similarity=0.101 Sum_probs=29.3
Q ss_pred eEEEEeCCCcc----------HHHHHHHHHHCCccceeeccccHHHHHhC
Q 031788 97 RLVVGCQSGAR----------SLHATADLLGAGFKHVSNFGGGHMAWVQN 136 (153)
Q Consensus 97 ~ivi~c~~g~~----------a~~~~~~L~~~G~~~v~~l~gG~~~w~~~ 136 (153)
++-+||+-... .......|+++|++ +.+|.||+-+|..+
T Consensus 32 ~~~~Y~GfDPTa~slHlGhlv~l~kL~~fQ~aGh~-~ivLigd~ta~IgD 80 (401)
T COG0162 32 PLRVYIGFDPTAPSLHLGHLVPLMKLRRFQDAGHK-PIVLIGDATAMIGD 80 (401)
T ss_pred CceEEEeeCCCCCccchhhHHHHHHHHHHHHCCCe-EEEEecccceecCC
Confidence 88999883322 23456678899998 88999999888765
No 208
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=42.08 E-value=70 Score=18.56 Aligned_cols=30 Identities=7% Similarity=0.036 Sum_probs=23.2
Q ss_pred cCCCeEEEEeCCCccHHHHHHHHHHCCccc
Q 031788 93 KEEDRLVVGCQSGARSLHATADLLGAGFKH 122 (153)
Q Consensus 93 ~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~ 122 (153)
..+..+.+..++......+..+++..||.-
T Consensus 23 ~~g~~l~v~~d~~~s~~~i~~~~~~~G~~~ 52 (67)
T cd03421 23 EAGGEIEVLVDNEVAKENVSRFAESRGYEV 52 (67)
T ss_pred CCCCEEEEEEcChhHHHHHHHHHHHcCCEE
Confidence 567777777776666678888999999983
No 209
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=41.94 E-value=76 Score=20.37 Aligned_cols=31 Identities=19% Similarity=0.288 Sum_probs=15.0
Q ss_pred HHHHHHHHHHCCccceeeccccHHHHHhCCCc
Q 031788 108 SLHATADLLGAGFKHVSNFGGGHMAWVQNGLK 139 (153)
Q Consensus 108 a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~ 139 (153)
....++.|.+.||+ ++.-.|...-..+.|.+
T Consensus 15 ~~~~~~~l~~~G~~-l~aT~gT~~~l~~~gi~ 45 (110)
T cd01424 15 AVEIAKRLAELGFK-LVATEGTAKYLQEAGIP 45 (110)
T ss_pred HHHHHHHHHHCCCE-EEEchHHHHHHHHcCCe
Confidence 44555566666665 44443333333334554
No 210
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=41.84 E-value=23 Score=22.34 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=19.7
Q ss_pred chhHHHHHHHHHHHHHHhhhcCCcceeecHHH
Q 031788 4 SRNWVTFLRGLFLLLLICRSSGAEVITVDVRA 35 (153)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 35 (153)
.|-|++.++.+.+-.+++...+.+..++++++
T Consensus 3 RRlwiLslLAVtLtVALAAPsQKsKRSVtveq 34 (100)
T PF05984_consen 3 RRLWILSLLAVTLTVALAAPSQKSKRSVTVEQ 34 (100)
T ss_pred hhhHHHHHHHHHHHHHhhccccccccceeecC
Confidence 35677777766666555555566655665554
No 211
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=41.76 E-value=30 Score=28.35 Aligned_cols=33 Identities=18% Similarity=0.339 Sum_probs=28.5
Q ss_pred EEEEeCCCccHHHHHHHHHHCCccceeeccccHH
Q 031788 98 LVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 131 (153)
Q Consensus 98 ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~ 131 (153)
-||+|.....+...+..|.+.|++ |..|.|.+.
T Consensus 333 siIFc~tk~ta~~l~~~m~~~Gh~-V~~l~G~l~ 365 (477)
T KOG0332|consen 333 SIIFCHTKATAMWLYEEMRAEGHQ-VSLLHGDLT 365 (477)
T ss_pred eEEEEeehhhHHHHHHHHHhcCce-eEEeeccch
Confidence 477888888889999999999998 999999764
No 212
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=41.69 E-value=1e+02 Score=20.30 Aligned_cols=45 Identities=20% Similarity=0.270 Sum_probs=26.3
Q ss_pred HHHHHHHhh---ccCCCeEEEEeC-CCccHHHHHHHHHHCCccceeeccc
Q 031788 83 DFLKKVRSL---CKEEDRLVVGCQ-SGARSLHATADLLGAGFKHVSNFGG 128 (153)
Q Consensus 83 ~~~~~~~~~---~~~~~~ivi~c~-~g~~a~~~~~~L~~~G~~~v~~l~g 128 (153)
++.+.+.+. .+.++.+++.++ -|+.-..++..+.... .+++++.|
T Consensus 42 ~~~~~i~~~i~~~~~~~~viil~Dl~GGSp~n~~~~~~~~~-~~~~visG 90 (122)
T cd00006 42 DLLEKIKAALAELDSGEGVLILTDLFGGSPNNAAARLSMEH-PPVEVIAG 90 (122)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEeCCCCCHHHHHHHHHhcC-CCEEEEEc
Confidence 455555443 455677888888 3555455555554332 66777765
No 213
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=41.23 E-value=37 Score=27.02 Aligned_cols=41 Identities=12% Similarity=-0.042 Sum_probs=32.1
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHCCcc-ceeeccccHHHHH
Q 031788 94 EEDRLVVGCQSGARSLHATADLLGAGFK-HVSNFGGGHMAWV 134 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~-~v~~l~gG~~~w~ 134 (153)
++.+++++|++...+...+..|++.|.. .+..+.|......
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~ 312 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKD 312 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHH
Confidence 5678999999999999999999987753 4677777655433
No 214
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=41.10 E-value=60 Score=26.82 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=31.2
Q ss_pred cCCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHH
Q 031788 93 KEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 131 (153)
Q Consensus 93 ~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~ 131 (153)
....+++++|++-..+..+...|...|+. +..+.|++.
T Consensus 333 ~~~~~~IVF~~s~~~~~~l~~~L~~~~~~-~~~~~g~~~ 370 (475)
T PRK01297 333 NPWERVMVFANRKDEVRRIEERLVKDGIN-AAQLSGDVP 370 (475)
T ss_pred cCCCeEEEEeCCHHHHHHHHHHHHHcCCC-EEEEECCCC
Confidence 34568999999988889999999999987 777778754
No 215
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=40.86 E-value=51 Score=26.55 Aligned_cols=30 Identities=30% Similarity=0.502 Sum_probs=24.9
Q ss_pred ccCCCeEEEEeCCCccHHHHHHHHHHCCcc
Q 031788 92 CKEEDRLVVGCQSGARSLHATADLLGAGFK 121 (153)
Q Consensus 92 ~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~ 121 (153)
+.++++|++...+|.-|..++..|.+.|++
T Consensus 2 ~~~~~kVlValSGGVDSsvaa~LL~~~G~~ 31 (360)
T PRK14665 2 MEKNKRVLLGMSGGTDSSVAAMLLLEAGYE 31 (360)
T ss_pred CCCCCEEEEEEcCCHHHHHHHHHHHHcCCe
Confidence 356778888888888889999999989986
No 216
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=40.77 E-value=37 Score=26.87 Aligned_cols=31 Identities=10% Similarity=0.067 Sum_probs=26.2
Q ss_pred CCCeEEEEeC---CCccHHHHHHHHHHCCcccee
Q 031788 94 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVS 124 (153)
Q Consensus 94 ~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~ 124 (153)
+++.++++++ +|..-..+++.|++.|-..|+
T Consensus 217 ~gk~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~ 250 (323)
T PRK02458 217 AGKKAILIDDILNTGKTFAEAAKIVEREGATEIY 250 (323)
T ss_pred CCCEEEEEcceeCcHHHHHHHHHHHHhCCCCcEE
Confidence 6788999866 777778999999999998875
No 217
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=40.48 E-value=39 Score=22.79 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=17.4
Q ss_pred eEEEEeCCC-ccHHHHHHHHHHCCcc-ceeeccccH
Q 031788 97 RLVVGCQSG-ARSLHATADLLGAGFK-HVSNFGGGH 130 (153)
Q Consensus 97 ~ivi~c~~g-~~a~~~~~~L~~~G~~-~v~~l~gG~ 130 (153)
+|+++|.+. .||+.+...++...-+ ++.+...|.
T Consensus 2 ~iLfvc~~N~~RS~mAEai~~~~~~~~~~~v~SaG~ 37 (141)
T cd00115 2 KVLFVCTGNICRSPMAEAIFRHLAPKLDIEVDSAGT 37 (141)
T ss_pred eEEEEecChhhhhHHHHHHHHHHhhhCCEEEECCCC
Confidence 466666532 3566665555554322 455555554
No 218
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=40.27 E-value=1.6e+02 Score=22.15 Aligned_cols=63 Identities=17% Similarity=0.418 Sum_probs=34.9
Q ss_pred hhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh---ccCCCeEEEEeCCC-ccH--HHHHHHHHHCCcc
Q 031788 52 AEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL---CKEEDRLVVGCQSG-ARS--LHATADLLGAGFK 121 (153)
Q Consensus 52 ~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivi~c~~g-~~a--~~~~~~L~~~G~~ 121 (153)
++.|....| .+.++|+. ++..+.++...++-+. ..++..|.|+|..| +|. -.+++.+...|+.
T Consensus 108 ~~~f~~~Gi---~h~~l~f~----Dg~tP~~~~v~~fv~i~e~~~~~g~iaVHCkaGlGRTG~liAc~lmy~~g~t 176 (225)
T KOG1720|consen 108 AKRFTDAGI---DHHDLFFA----DGSTPTDAIVKEFVKIVENAEKGGKIAVHCKAGLGRTGTLIACYLMYEYGMT 176 (225)
T ss_pred hHHhcccCc---eeeeeecC----CCCCCCHHHHHHHHHHHHHHHhcCeEEEEeccCCCchhHHHHHHHHHHhCCC
Confidence 344444444 45666663 3444444444433333 23489999999966 353 3445556667775
No 219
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=40.20 E-value=95 Score=22.39 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=34.1
Q ss_pred ccCCCeEEEEeC---CCccHHHHHHHHHHCCccce---eecc----ccHHHHHh-CCCcee
Q 031788 92 CKEEDRLVVGCQ---SGARSLHATADLLGAGFKHV---SNFG----GGHMAWVQ-NGLKVK 141 (153)
Q Consensus 92 ~~~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v---~~l~----gG~~~w~~-~g~~~~ 141 (153)
+.++++++++++ +|.....+.+.+++.|-.-+ .+++ ||.....+ .|.|+.
T Consensus 111 ~~~G~rVlIVDDvitTG~T~~~ai~ll~~aGa~vv~v~~vvd~~~~~g~~~l~~~~gv~v~ 171 (187)
T PRK12560 111 IEKGDRVAIIDDTLSTGGTVIALIKAIENSGGIVSDVICVIEKTQNNGRKKLFTQTGINVK 171 (187)
T ss_pred CCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEEecccchHHHHhhccCCcEE
Confidence 358999999988 77777888889999997532 1222 45555533 476664
No 220
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=40.17 E-value=63 Score=19.36 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=22.1
Q ss_pred CCCeEEEEeC-CCccHHHHHHHHHHCCcc
Q 031788 94 EEDRLVVGCQ-SGARSLHATADLLGAGFK 121 (153)
Q Consensus 94 ~~~~ivi~c~-~g~~a~~~~~~L~~~G~~ 121 (153)
...+|++|.. .+..+.++-+.|.+.|++
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~ 34 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEKGYD 34 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHcCCC
Confidence 4566888877 667788888889999876
No 221
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=40.03 E-value=42 Score=25.05 Aligned_cols=31 Identities=26% Similarity=0.191 Sum_probs=26.7
Q ss_pred CeEEEEeC---CCccHHHHHHHHHHCCccceeec
Q 031788 96 DRLVVGCQ---SGARSLHATADLLGAGFKHVSNF 126 (153)
Q Consensus 96 ~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~~l 126 (153)
++|+++++ +|.....+++.|++.|..+|.++
T Consensus 185 ~~vlLvDDV~TTGaTl~~~~~~L~~~Ga~~v~~~ 218 (225)
T COG1040 185 KNVLLVDDVYTTGATLKEAAKLLREAGAKRVFVL 218 (225)
T ss_pred CeEEEEecccccHHHHHHHHHHHHHcCCceEEEE
Confidence 67999988 77788899999999999888765
No 222
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=39.98 E-value=58 Score=22.87 Aligned_cols=40 Identities=18% Similarity=0.166 Sum_probs=28.7
Q ss_pred ccCCCeEEEEeCCCc--cHHHHHHHHHH---CCccceeeccccHHHH
Q 031788 92 CKEEDRLVVGCQSGA--RSLHATADLLG---AGFKHVSNFGGGHMAW 133 (153)
Q Consensus 92 ~~~~~~ivi~c~~g~--~a~~~~~~L~~---~G~~~v~~l~gG~~~w 133 (153)
++ +..+|+.|..|. .|..+++.|.. .| .++.++.||-.++
T Consensus 63 ~~-~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g-~~i~FvIGGa~G~ 107 (153)
T TIGR00246 63 IG-KAHVVTLDIPGKPWTTPQLADTLEKWKTDG-RDVTLLIGGPEGL 107 (153)
T ss_pred CC-CCeEEEEcCCCCcCCHHHHHHHHHHHhccC-CeEEEEEcCCCcC
Confidence 44 466777777775 47888888874 56 5799999986554
No 223
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=39.96 E-value=61 Score=29.51 Aligned_cols=46 Identities=11% Similarity=0.091 Sum_probs=36.5
Q ss_pred HHHHHhhccCCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHH
Q 031788 85 LKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 131 (153)
Q Consensus 85 ~~~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~ 131 (153)
.+++.+...++++|+|.|.+-..+...+..|...|+. ...|.+...
T Consensus 439 i~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~-~~vLnak~~ 484 (908)
T PRK13107 439 IKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIP-HEVLNAKFH 484 (908)
T ss_pred HHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCC-eEeccCccc
Confidence 3344444678999999999999999999999999998 456777654
No 224
>PF10724 DUF2516: Protein of unknown function (DUF2516); InterPro: IPR019662 This entry represents a conserved protein in Actinobacteria. The function is not known.
Probab=39.88 E-value=63 Score=21.04 Aligned_cols=16 Identities=31% Similarity=0.374 Sum_probs=11.3
Q ss_pred HHhCCCeEEecCChhh
Q 031788 39 LLESGYGYLDVRTAEE 54 (153)
Q Consensus 39 ~~~~~~~iIDvR~~~e 54 (153)
......-++||||.-.
T Consensus 75 ~vaa~VYl~DVRPal~ 90 (100)
T PF10724_consen 75 AVAAGVYLVDVRPALR 90 (100)
T ss_pred HHHhhheeecccHHHH
Confidence 3345677899999654
No 225
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=39.73 E-value=1.1e+02 Score=22.23 Aligned_cols=51 Identities=20% Similarity=0.202 Sum_probs=34.7
Q ss_pred ccCCCeEEEEeC---CCccHHHHHHHHHHCCccce---eecccc----HHHHHhCCCceec
Q 031788 92 CKEEDRLVVGCQ---SGARSLHATADLLGAGFKHV---SNFGGG----HMAWVQNGLKVKA 142 (153)
Q Consensus 92 ~~~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v---~~l~gG----~~~w~~~g~~~~~ 142 (153)
+.++++++++++ +|.....+.+.+++.|.+-+ .+++.+ .....+.|.|+..
T Consensus 114 i~~G~rVlIVDDviaTGgT~~a~~~lv~~aGa~vvgv~~lvd~~~~~g~~~l~~~g~~~~s 174 (189)
T PRK09219 114 LSEGDRVLIIDDFLANGQAALGLIDIIEQAGAKVAGIGIVIEKSFQDGRKLLEEKGYRVES 174 (189)
T ss_pred CCCCCEEEEEeehhhcChHHHHHHHHHHHCCCEEEEEEEEEEccCccHHHHHHhcCCcEEE
Confidence 468999999988 77777888899999997632 234333 3333345666653
No 226
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=39.70 E-value=1.1e+02 Score=21.28 Aligned_cols=38 Identities=18% Similarity=0.145 Sum_probs=27.7
Q ss_pred ccCCCeEEEEeCCCc---cHHHHHHHHHHCCccceeeccccH
Q 031788 92 CKEEDRLVVGCQSGA---RSLHATADLLGAGFKHVSNFGGGH 130 (153)
Q Consensus 92 ~~~~~~ivi~c~~g~---~a~~~~~~L~~~G~~~v~~l~gG~ 130 (153)
+...++|.++.-|.. .|.+++.+|.+.||+ |.-+.-+.
T Consensus 13 L~~~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~-ViPVNP~~ 53 (140)
T COG1832 13 LKSAKTIAVVGASDKPDRPSYRVAKYLQQKGYR-VIPVNPKL 53 (140)
T ss_pred HHhCceEEEEecCCCCCccHHHHHHHHHHCCCE-EEeeCccc
Confidence 456888888866442 488999999999998 55444433
No 227
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=39.32 E-value=58 Score=25.81 Aligned_cols=30 Identities=23% Similarity=0.230 Sum_probs=25.0
Q ss_pred CCeEEEEeC---CCccHHHHHHHHHHCCcccee
Q 031788 95 EDRLVVGCQ---SGARSLHATADLLGAGFKHVS 124 (153)
Q Consensus 95 ~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~ 124 (153)
++.++++++ +|+.-..+++.|++.|-.+|+
T Consensus 214 gk~~iiVDDiIdTgGTi~~Aa~~Lk~~GAk~V~ 246 (314)
T COG0462 214 GKDVVIVDDIIDTGGTIAKAAKALKERGAKKVY 246 (314)
T ss_pred CCEEEEEeccccccHHHHHHHHHHHHCCCCeEE
Confidence 456788877 777788999999999999886
No 228
>TIGR02801 tolR TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score.
Probab=39.22 E-value=1e+02 Score=20.44 Aligned_cols=44 Identities=14% Similarity=0.264 Sum_probs=29.3
Q ss_pred HHHHHHHhh--ccCCCeEEEEeCCCcc---HHHHHHHHHHCCccceeec
Q 031788 83 DFLKKVRSL--CKEEDRLVVGCQSGAR---SLHATADLLGAGFKHVSNF 126 (153)
Q Consensus 83 ~~~~~~~~~--~~~~~~ivi~c~~g~~---a~~~~~~L~~~G~~~v~~l 126 (153)
++...+.+. -+++.++++-++.... -..+...+++.|++++.+.
T Consensus 79 ~L~~~L~~~~~~~~~~~v~i~aD~~~~~~~vv~vmd~~~~~G~~~v~l~ 127 (129)
T TIGR02801 79 ELLAEIAAALAANPDTPVLIRADKTVPYGEVIKVMALLKQAGIEKVGLI 127 (129)
T ss_pred HHHHHHHHHHhhCCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEe
Confidence 444555543 2566678888876544 3466778889999988654
No 229
>PRK08264 short chain dehydrogenase; Validated
Probab=39.19 E-value=56 Score=23.63 Aligned_cols=36 Identities=14% Similarity=0.072 Sum_probs=27.4
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHCCccceeecccc
Q 031788 94 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGG 129 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG 129 (153)
.++.++|...+|..+..++..|.+.|+++|..+.-.
T Consensus 5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~ 40 (238)
T PRK08264 5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARD 40 (238)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecC
Confidence 456788887788888889999999998557655433
No 230
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=38.82 E-value=40 Score=20.55 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=15.7
Q ss_pred eEEEEeCCCcc-HHHHHHH----HHHCCcc
Q 031788 97 RLVVGCQSGAR-SLHATAD----LLGAGFK 121 (153)
Q Consensus 97 ~ivi~c~~g~~-a~~~~~~----L~~~G~~ 121 (153)
+++++|++|.. |...... +.+.|+.
T Consensus 1 kilvvC~~G~~tS~ll~~kl~~~f~~~~i~ 30 (86)
T cd05563 1 KILAVCGSGLGSSLMLKMNVEKVLKELGIE 30 (86)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHCCCc
Confidence 37899999875 3444434 4456654
No 231
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=38.67 E-value=92 Score=23.94 Aligned_cols=46 Identities=20% Similarity=0.174 Sum_probs=31.1
Q ss_pred HHHHHHHhh-ccCCCeEEEEeCCCccHHHHHHHHHHCCccceeecccc
Q 031788 83 DFLKKVRSL-CKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGG 129 (153)
Q Consensus 83 ~~~~~~~~~-~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG 129 (153)
-|...+.+. .+.+++++++ +.|..+.-++..|.+.|..+++++.=.
T Consensus 109 Gf~~~L~~~~~~~~~~vlil-GaGGaarAi~~aL~~~g~~~i~i~nR~ 155 (272)
T PRK12550 109 AIAKLLASYQVPPDLVVALR-GSGGMAKAVAAALRDAGFTDGTIVARN 155 (272)
T ss_pred HHHHHHHhcCCCCCCeEEEE-CCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 555555443 3444566666 567777788888999999888876543
No 232
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors. This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va
Probab=38.58 E-value=80 Score=23.11 Aligned_cols=38 Identities=18% Similarity=0.289 Sum_probs=28.5
Q ss_pred HHHHHHHhhccCCCeEEEEeCCCccHHHHHHHHHHCCc
Q 031788 83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGF 120 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~~~G~ 120 (153)
++...+.++...+.+||+.|..+..+..+.+.+.+.|.
T Consensus 183 ~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~ 220 (298)
T cd06269 183 DIRRLLKELKSSTARVIVVFSSEEDALRLLEEAVELGM 220 (298)
T ss_pred HHHHHHHHHHhcCCcEEEEEechHHHHHHHHHHHHcCC
Confidence 45555555534455899999887888888999999998
No 233
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=38.56 E-value=49 Score=19.73 Aligned_cols=29 Identities=17% Similarity=0.394 Sum_probs=23.3
Q ss_pred CcceeecHHHHHHHHhCC--CeEEecCChhh
Q 031788 26 AEVITVDVRAAKNLLESG--YGYLDVRTAEE 54 (153)
Q Consensus 26 ~~~~~i~~~~~~~~~~~~--~~iIDvR~~~e 54 (153)
.....|+.+++.+++..+ ..|+|..+-++
T Consensus 15 ~~s~YiTL~di~~lV~~g~~~~V~D~ktgeD 45 (64)
T PF07879_consen 15 ETSSYITLEDIAQLVREGEDFKVVDAKTGED 45 (64)
T ss_pred CCceeEeHHHHHHHHHCCCeEEEEECCCCcc
Confidence 345679999999999865 78999987555
No 234
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=38.47 E-value=64 Score=28.01 Aligned_cols=36 Identities=14% Similarity=0.279 Sum_probs=30.6
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccH
Q 031788 94 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGH 130 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~ 130 (153)
....++++|++...+..++..|...||. +..+.|.+
T Consensus 244 ~~~~~IVF~~tk~~a~~l~~~L~~~g~~-~~~lhgd~ 279 (629)
T PRK11634 244 DFDAAIIFVRTKNATLEVAEALERNGYN-SAALNGDM 279 (629)
T ss_pred CCCCEEEEeccHHHHHHHHHHHHhCCCC-EEEeeCCC
Confidence 4467899999988899999999999997 77888875
No 235
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=38.31 E-value=61 Score=29.24 Aligned_cols=37 Identities=22% Similarity=0.150 Sum_probs=31.9
Q ss_pred ccCCCeEEEEeCCCccHHHHHHHHHHCCccceeecccc
Q 031788 92 CKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGG 129 (153)
Q Consensus 92 ~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG 129 (153)
..++++++|.|.+-..+...+..|.+.|++ ...|.+.
T Consensus 427 ~~~grpVLIft~Si~~se~Ls~~L~~~gi~-~~vLnak 463 (830)
T PRK12904 427 HKKGQPVLVGTVSIEKSELLSKLLKKAGIP-HNVLNAK 463 (830)
T ss_pred HhcCCCEEEEeCcHHHHHHHHHHHHHCCCc-eEeccCc
Confidence 467899999999988999999999999988 4667664
No 236
>PTZ00424 helicase 45; Provisional
Probab=38.27 E-value=82 Score=25.05 Aligned_cols=37 Identities=16% Similarity=0.198 Sum_probs=30.5
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHH
Q 031788 94 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 131 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~ 131 (153)
....++++|++-..+...+..|...|+. +..+.|++.
T Consensus 266 ~~~~~ivF~~t~~~~~~l~~~l~~~~~~-~~~~h~~~~ 302 (401)
T PTZ00424 266 TITQAIIYCNTRRKVDYLTKKMHERDFT-VSCMHGDMD 302 (401)
T ss_pred CCCeEEEEecCcHHHHHHHHHHHHCCCc-EEEEeCCCC
Confidence 4567899999888888999999999876 788888863
No 237
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=38.14 E-value=52 Score=26.18 Aligned_cols=32 Identities=16% Similarity=0.117 Sum_probs=26.4
Q ss_pred CCCeEEEEeC---CCccHHHHHHHHHHCCccceee
Q 031788 94 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSN 125 (153)
Q Consensus 94 ~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~~ 125 (153)
+++.++++++ +|.....+++.|++.|-..|+.
T Consensus 217 ~Gk~VIIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~ 251 (332)
T PRK00553 217 KNKNCLIVDDMIDTGGTVIAAAKLLKKQKAKKVCV 251 (332)
T ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCcEEEE
Confidence 5678899876 7777889999999999887753
No 238
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=38.12 E-value=43 Score=27.76 Aligned_cols=34 Identities=21% Similarity=0.114 Sum_probs=28.4
Q ss_pred CCCeEEEEeC---CCccHHHHHHHHHHCCccceeecc
Q 031788 94 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNFG 127 (153)
Q Consensus 94 ~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~~l~ 127 (153)
++++|+++++ +|.....+++.|++.|-..|++..
T Consensus 333 ~gk~VlLVDD~IttGtTl~~~~~~L~~aGAk~V~~~~ 369 (442)
T PRK08341 333 NGKRVVLVDDSIVRGTTMKRIVKMLRDAGAREVHVRI 369 (442)
T ss_pred CCCEEEEEeeeeccHHHHHHHHHHHHhcCCcEEEEEE
Confidence 6789999988 677788899999999998776554
No 239
>PRK05922 type III secretion system ATPase; Validated
Probab=38.10 E-value=1e+02 Score=25.60 Aligned_cols=58 Identities=7% Similarity=0.188 Sum_probs=37.6
Q ss_pred HHHHHHHhhccCCCeEEEEeCCCc----------cHHHHHHHHHHCCccceeeccccHHHHHhCCCcee
Q 031788 83 DFLKKVRSLCKEEDRLVVGCQSGA----------RSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVK 141 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~ivi~c~~g~----------~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~ 141 (153)
++.++.......++.++++..+.. .+...|+++++.|. +|-.+...+-.|.++..++.
T Consensus 200 eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~~a~tiAEyfrd~G~-~VLl~~DslTR~A~A~REis 267 (434)
T PRK05922 200 EYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGRAAMTIAEYFRDQGH-RVLFIMDSLSRWIAALQEVA 267 (434)
T ss_pred HHHHHHHhhccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCC-CEEEeccchhHHHHHHHHHH
Confidence 344443333345566666655442 13457888999995 59888889988888765554
No 240
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=38.08 E-value=43 Score=28.10 Aligned_cols=35 Identities=26% Similarity=0.148 Sum_probs=29.1
Q ss_pred CCCeEEEEeC---CCccHHHHHHHHHHCCccceeeccc
Q 031788 94 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNFGG 128 (153)
Q Consensus 94 ~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~~l~g 128 (153)
++++|+++++ +|.....+++.|++.|...|++...
T Consensus 347 ~gk~VlLVDDsittGtTl~~~~~~L~~aGA~eV~v~~~ 384 (475)
T PRK07631 347 EGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVRIS 384 (475)
T ss_pred CCceEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEEe
Confidence 5789999988 6667788899999999998876654
No 241
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=38.03 E-value=50 Score=27.88 Aligned_cols=35 Identities=20% Similarity=0.159 Sum_probs=29.1
Q ss_pred CCCeEEEEeC---CCccHHHHHHHHHHCCccceeeccc
Q 031788 94 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNFGG 128 (153)
Q Consensus 94 ~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~~l~g 128 (153)
++++|+++++ +|.....+++.|++.|-..|+....
T Consensus 376 ~gkrVlLVDDvIttGtTl~~~~~~Lr~aGAkeV~~~i~ 413 (500)
T PRK07349 376 AGKRIIIVDDSIVRGTTSRKIVKALRDAGATEVHMRIS 413 (500)
T ss_pred CCCEEEEEeceeCCcHHHHHHHHHHHHhCCeEEEEEeC
Confidence 6899999988 6777889999999999887765543
No 242
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=37.81 E-value=56 Score=22.97 Aligned_cols=31 Identities=16% Similarity=0.146 Sum_probs=25.6
Q ss_pred cCCCeEEEEeC---CCccHHHHHHHHHHCCccce
Q 031788 93 KEEDRLVVGCQ---SGARSLHATADLLGAGFKHV 123 (153)
Q Consensus 93 ~~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v 123 (153)
.++++|+++++ +|.....+++.|++.|.+.+
T Consensus 107 ~~gk~VLIVDDIitTG~Tl~~a~~~L~~~Ga~~v 140 (169)
T TIGR01090 107 KPGQRVLIVDDLLATGGTAEATDELIRKLGGEVV 140 (169)
T ss_pred CCcCEEEEEeccccchHHHHHHHHHHHHcCCEEE
Confidence 47889999988 77777888999999997654
No 243
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=37.63 E-value=40 Score=30.81 Aligned_cols=46 Identities=17% Similarity=0.299 Sum_probs=37.9
Q ss_pred ccCCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHH---------HHHhCCC
Q 031788 92 CKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM---------AWVQNGL 138 (153)
Q Consensus 92 ~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~---------~w~~~g~ 138 (153)
..++...||||-+-....+++..|+..|.. ...|+.|+. +|.....
T Consensus 482 ~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~-a~~YHAGl~~~~R~~Vq~~w~~~~~ 536 (941)
T KOG0351|consen 482 RHPDQSGIIYCLSRKECEQVSAVLRSLGKS-AAFYHAGLPPKERETVQKAWMSDKI 536 (941)
T ss_pred cCCCCCeEEEeCCcchHHHHHHHHHHhchh-hHhhhcCCCHHHHHHHHHHHhcCCC
Confidence 478999999999888899999999999965 678888874 5776543
No 244
>PF04722 Ssu72: Ssu72-like protein; InterPro: IPR006811 The highly conserved and essential protein Ssu72 has intrinsic phosphatase activity and plays an essential role in the transcription cycle. Ssu72 was originally identified in a yeast genetic screen as enhancer of a defect caused by a mutation in the transcription initiation factor TFIIB []. It binds to TFIIB and is also involved in mRNA elongation. Ssu72 is further involved in both poly(A) dependent and independent termination. It is a subunit of the yeast cleavage and polyadenylation factor (CPF), which is part of the machinery for mRNA 3'-end formation. Ssu72 is also essential for transcription termination of snRNAs [].; GO: 0004721 phosphoprotein phosphatase activity, 0006397 mRNA processing, 0005634 nucleus; PDB: 3O2S_B 3O2Q_E 3FMV_H 3OMW_D 3P9Y_B 3FDF_A 3OMX_A.
Probab=37.63 E-value=61 Score=23.82 Aligned_cols=29 Identities=45% Similarity=0.669 Sum_probs=22.4
Q ss_pred eEEEEeCCC-ccHHHHHHHHHHCCccceeec
Q 031788 97 RLVVGCQSG-ARSLHATADLLGAGFKHVSNF 126 (153)
Q Consensus 97 ~ivi~c~~g-~~a~~~~~~L~~~G~~~v~~l 126 (153)
++.++|.+- .||..|=..|.+.||+ |.-+
T Consensus 3 ~~avVCasN~NRSMEAH~~L~~~G~~-V~Sf 32 (195)
T PF04722_consen 3 RFAVVCASNQNRSMEAHNVLKKAGFN-VRSF 32 (195)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHTT-E-EEEE
T ss_pred eEEEEccCCCCcCHHHHHHHHHCCCc-eEee
Confidence 578999965 5899999999999995 5544
No 245
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=37.59 E-value=30 Score=22.91 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=14.6
Q ss_pred HHHHHHHHhC-C-CeEEecCChh
Q 031788 33 VRAAKNLLES-G-YGYLDVRTAE 53 (153)
Q Consensus 33 ~~~~~~~~~~-~-~~iIDvR~~~ 53 (153)
.+++.+.+++ + -+|||||...
T Consensus 2 ~e~f~~~l~~~~i~~lVDVR~~P 24 (122)
T PF04343_consen 2 IERFYDLLKKNGIRVLVDVRLWP 24 (122)
T ss_pred HHHHHHHHHHCCCeEEEEECCCC
Confidence 4677777764 4 5899999643
No 246
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=37.35 E-value=90 Score=26.45 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=34.0
Q ss_pred EEEEeCCCccHHHHHHHHHHCCccceeeccccH---HHHHhCCCceecCCC
Q 031788 98 LVVGCQSGARSLHATADLLGAGFKHVSNFGGGH---MAWVQNGLKVKAREK 145 (153)
Q Consensus 98 ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~---~~w~~~g~~~~~~~~ 145 (153)
=+++|+.|.-++.+++.|.+.|++ +.+++..- +.+++.|.++..++.
T Consensus 419 hiiI~G~G~~G~~la~~L~~~g~~-vvvId~d~~~~~~~~~~g~~~i~GD~ 468 (558)
T PRK10669 419 HALLVGYGRVGSLLGEKLLAAGIP-LVVIETSRTRVDELRERGIRAVLGNA 468 (558)
T ss_pred CEEEECCChHHHHHHHHHHHCCCC-EEEEECCHHHHHHHHHCCCeEEEcCC
Confidence 367788888889999999999976 77776543 345556777766653
No 247
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=37.33 E-value=43 Score=23.60 Aligned_cols=31 Identities=29% Similarity=0.353 Sum_probs=23.8
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHCCccceeec
Q 031788 94 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNF 126 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l 126 (153)
++++|+|+ ++|..+..++..|.+.| .+|..+
T Consensus 166 ~~k~V~VV-G~G~SA~d~a~~l~~~g-~~V~~~ 196 (203)
T PF13738_consen 166 KGKRVVVV-GGGNSAVDIAYALAKAG-KSVTLV 196 (203)
T ss_dssp TTSEEEEE---SHHHHHHHHHHTTTC-SEEEEE
T ss_pred CCCcEEEE-cChHHHHHHHHHHHhhC-CEEEEE
Confidence 56888888 57788889999999999 667755
No 248
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=37.20 E-value=62 Score=20.63 Aligned_cols=34 Identities=21% Similarity=0.167 Sum_probs=23.2
Q ss_pred CCCeEEEEeC-CCccHHHHHHHHHHCCcc-ceeecc
Q 031788 94 EEDRLVVGCQ-SGARSLHATADLLGAGFK-HVSNFG 127 (153)
Q Consensus 94 ~~~~ivi~c~-~g~~a~~~~~~L~~~G~~-~v~~l~ 127 (153)
.+.+|++|.. .|..+.++-+.|.+.|++ .+..++
T Consensus 6 ~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid 41 (99)
T TIGR02189 6 SEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEID 41 (99)
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcC
Confidence 3466888877 666777888888888875 234443
No 249
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=37.18 E-value=1.2e+02 Score=22.15 Aligned_cols=36 Identities=17% Similarity=0.359 Sum_probs=23.8
Q ss_pred CccHHHHHHHHHHCCccceeeccccHHHHH-hCCCceec
Q 031788 105 GARSLHATADLLGAGFKHVSNFGGGHMAWV-QNGLKVKA 142 (153)
Q Consensus 105 g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~-~~g~~~~~ 142 (153)
.......++.|.++||+ ++ -.+|...|. +.|.+++.
T Consensus 10 K~~l~~lAk~L~~lGf~-I~-AT~GTAk~L~e~GI~v~~ 46 (187)
T cd01421 10 KTGLVEFAKELVELGVE-IL-STGGTAKFLKEAGIPVTD 46 (187)
T ss_pred cccHHHHHHHHHHCCCE-EE-EccHHHHHHHHcCCeEEE
Confidence 34566788889999988 44 445555554 45777653
No 250
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=36.87 E-value=70 Score=22.60 Aligned_cols=31 Identities=26% Similarity=0.200 Sum_probs=25.5
Q ss_pred cCCCeEEEEeC---CCccHHHHHHHHHHCCccce
Q 031788 93 KEEDRLVVGCQ---SGARSLHATADLLGAGFKHV 123 (153)
Q Consensus 93 ~~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v 123 (153)
.++++|+++++ +|.....+.+.|++.|.+.+
T Consensus 112 ~~g~~VLIVDDivtTG~Tl~~~~~~l~~~Ga~~v 145 (175)
T PRK02304 112 KPGDRVLIVDDLLATGGTLEAAIKLLERLGAEVV 145 (175)
T ss_pred CCCCEEEEEeCCccccHHHHHHHHHHHHcCCEEE
Confidence 57899999988 67777788899999998754
No 251
>PLN02541 uracil phosphoribosyltransferase
Probab=36.83 E-value=62 Score=24.61 Aligned_cols=29 Identities=24% Similarity=0.341 Sum_probs=23.7
Q ss_pred cCCCeEEEEeC---CCccHHHHHHHHHHCCcc
Q 031788 93 KEEDRLVVGCQ---SGARSLHATADLLGAGFK 121 (153)
Q Consensus 93 ~~~~~ivi~c~---~g~~a~~~~~~L~~~G~~ 121 (153)
+.++.|+++++ +|..+..+.+.|.+.|.+
T Consensus 155 ~~~~~VlllDpmLATGgS~~~ai~~L~~~Gv~ 186 (244)
T PLN02541 155 PEGSRVLVVDPMLATGGTIVAAIDELVSRGAS 186 (244)
T ss_pred CCCCEEEEECcchhhhHHHHHHHHHHHHcCCC
Confidence 34567888877 788888999999999986
No 252
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=36.54 E-value=64 Score=19.99 Aligned_cols=28 Identities=18% Similarity=0.077 Sum_probs=20.6
Q ss_pred CCCeEEEEeC------CCccHHHHHHHHHHCCcc
Q 031788 94 EEDRLVVGCQ------SGARSLHATADLLGAGFK 121 (153)
Q Consensus 94 ~~~~ivi~c~------~g~~a~~~~~~L~~~G~~ 121 (153)
.+.+|+++.. .+..+.++.+.|.+.|.+
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~ 39 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVD 39 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCC
Confidence 3567777754 566788888888888865
No 253
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=36.50 E-value=72 Score=18.62 Aligned_cols=25 Identities=12% Similarity=0.084 Sum_probs=18.8
Q ss_pred eEEEEeC-CCccHHHHHHHHHHCCcc
Q 031788 97 RLVVGCQ-SGARSLHATADLLGAGFK 121 (153)
Q Consensus 97 ~ivi~c~-~g~~a~~~~~~L~~~G~~ 121 (153)
+|++|+. ++..+.++.+.|.+.|++
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~ 27 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLP 27 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCc
Confidence 5677766 566777888888888876
No 254
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=36.38 E-value=1e+02 Score=19.50 Aligned_cols=31 Identities=26% Similarity=0.261 Sum_probs=24.6
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHCCcccee
Q 031788 94 EEDRLVVGCQSGARSLHATADLLGAGFKHVS 124 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~ 124 (153)
.+-+|++-|..|..+..+...|.++|.+.+.
T Consensus 20 ~~~kivvD~~~G~~~~~~~~ll~~lg~~~~~ 50 (104)
T PF02879_consen 20 SGLKIVVDCMNGAGSDILPRLLERLGCDVIE 50 (104)
T ss_dssp TTCEEEEE-TTSTTHHHHHHHHHHTTCEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCcEEE
Confidence 4557999999999989999999999986443
No 255
>KOG4053 consensus Ataxin-1, involved in Ca2+ homeostasis [Function unknown]
Probab=36.30 E-value=31 Score=25.36 Aligned_cols=75 Identities=15% Similarity=0.004 Sum_probs=48.7
Q ss_pred hhhcCCcceeecHHHHHHHHh-CCCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEE
Q 031788 21 CRSSGAEVITVDVRAAKNLLE-SGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLV 99 (153)
Q Consensus 21 ~~~~~~~~~~i~~~~~~~~~~-~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv 99 (153)
+++...++..+..+||.+--. ++...||.-.-...+..|.||...+.+.+. +-...+.=....+.++.
T Consensus 45 AnGelkkVEDl~TeDFirsA~~S~~lkidsstVvrI~~S~~pg~vti~F~~g-----------~h~akv~levq~ehPfF 113 (224)
T KOG4053|consen 45 ANGELKKVEDLSTEDFIRSAEESDDLKIDSSTVVRIKSSGCPGSVTIIFEVG-----------EHKAKVSLEVQVEHPFF 113 (224)
T ss_pred cccceeehhhcchHHHHHHHHhcCCeEeecceEEEeeccCCCceEEEEEEec-----------cccccceeeccCCCceE
Confidence 344566678888898877654 456778887777777889999955554442 11112211267899999
Q ss_pred EEeCCCcc
Q 031788 100 VGCQSGAR 107 (153)
Q Consensus 100 i~c~~g~~ 107 (153)
+|. .|+.
T Consensus 114 VyG-qGWs 120 (224)
T KOG4053|consen 114 VYG-QGWS 120 (224)
T ss_pred Eec-cccc
Confidence 995 4443
No 256
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=36.30 E-value=51 Score=22.01 Aligned_cols=38 Identities=11% Similarity=0.074 Sum_probs=29.8
Q ss_pred EEEeCCCccHHHHHHHHHHCCccceeeccccHHHHHhC
Q 031788 99 VVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQN 136 (153)
Q Consensus 99 vi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~ 136 (153)
|++++.|.-+..++..|...|+.++.++++..-.+.+-
T Consensus 5 v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl 42 (135)
T PF00899_consen 5 VLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNL 42 (135)
T ss_dssp EEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGC
T ss_pred EEEECcCHHHHHHHHHHHHhCCCceeecCCcceeeccc
Confidence 44557788889999999999999999999886555443
No 257
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=36.29 E-value=2.3e+02 Score=24.19 Aligned_cols=38 Identities=13% Similarity=0.304 Sum_probs=32.6
Q ss_pred cCCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHH
Q 031788 93 KEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 131 (153)
Q Consensus 93 ~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~ 131 (153)
+++.++||+|..-..+...++.|+..||. +..++|...
T Consensus 339 ~~~~KvIIFc~tkr~~~~l~~~l~~~~~~-a~~iHGd~s 376 (519)
T KOG0331|consen 339 DSEGKVIIFCETKRTCDELARNLRRKGWP-AVAIHGDKS 376 (519)
T ss_pred cCCCcEEEEecchhhHHHHHHHHHhcCcc-eeeeccccc
Confidence 46678999999988999999999999977 788888764
No 258
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=36.23 E-value=62 Score=22.81 Aligned_cols=33 Identities=9% Similarity=-0.048 Sum_probs=26.7
Q ss_pred CCCeEEEEeC---CCccHHHHHHHHHHCCccceeec
Q 031788 94 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNF 126 (153)
Q Consensus 94 ~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~~l 126 (153)
++++++++++ +|.....+.+.|++.|..+++..
T Consensus 83 ~gk~vlivDDii~TG~Tl~~~~~~l~~~g~~~i~~~ 118 (166)
T TIGR01203 83 KGKDVLIVEDIVDTGLTLQYLLDLLKARKPKSLKIV 118 (166)
T ss_pred CCCEEEEEeeeeCcHHHHHHHHHHHHHCCCCEEEEE
Confidence 5788999977 77788899999999998776543
No 259
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=36.14 E-value=55 Score=25.31 Aligned_cols=31 Identities=19% Similarity=0.167 Sum_probs=25.8
Q ss_pred CCCeEEEEeC---CCccHHHHHHHHHHCCcccee
Q 031788 94 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVS 124 (153)
Q Consensus 94 ~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~ 124 (153)
++++++++++ +|.....+++.|++.|-..++
T Consensus 203 ~Gk~VlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~ 236 (285)
T PRK00934 203 KGKDVLIVDDIISTGGTMATAIKILKEQGAKKVY 236 (285)
T ss_pred CCCEEEEEcCccccHHHHHHHHHHHHHCCCCEEE
Confidence 5788999866 777778999999999988765
No 260
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=36.01 E-value=1e+02 Score=19.99 Aligned_cols=11 Identities=27% Similarity=0.332 Sum_probs=6.3
Q ss_pred HHHHHHHCCcc
Q 031788 111 ATADLLGAGFK 121 (153)
Q Consensus 111 ~~~~L~~~G~~ 121 (153)
.+++|++.|++
T Consensus 34 Ta~~L~~~Gi~ 44 (112)
T cd00532 34 TSRVLADAGIP 44 (112)
T ss_pred HHHHHHHcCCc
Confidence 34556666665
No 261
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=35.91 E-value=89 Score=17.98 Aligned_cols=36 Identities=17% Similarity=0.016 Sum_probs=26.8
Q ss_pred HHHHhhccCCCeEEEEeCCCccHHHHHHHHHHCCccc
Q 031788 86 KKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKH 122 (153)
Q Consensus 86 ~~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~ 122 (153)
+.+.+ .+.+..+.+..+.......+..++...||.-
T Consensus 18 ~~l~~-l~~g~~l~v~~d~~~~~~~i~~~~~~~g~~~ 53 (69)
T cd00291 18 KALEK-LKSGEVLEVLLDDPGAVEDIPAWAKETGHEV 53 (69)
T ss_pred HHHhc-CCCCCEEEEEecCCcHHHHHHHHHHHcCCEE
Confidence 33433 4778888888777666678888999999983
No 262
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=35.90 E-value=57 Score=29.93 Aligned_cols=37 Identities=22% Similarity=0.415 Sum_probs=30.7
Q ss_pred CCCeEEEEeCCCccHHHHHHHHH-HCCccceeeccccHH
Q 031788 94 EEDRLVVGCQSGARSLHATADLL-GAGFKHVSNFGGGHM 131 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L~-~~G~~~v~~l~gG~~ 131 (153)
.+++++|+|++...+......|. ..|++ +..+.||+.
T Consensus 492 ~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~-~~~ihG~~s 529 (956)
T PRK04914 492 RSEKVLVICAKAATALQLEQALREREGIR-AAVFHEGMS 529 (956)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHhhccCee-EEEEECCCC
Confidence 57789999999888888999994 67987 668889874
No 263
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=35.89 E-value=1.6e+02 Score=24.09 Aligned_cols=35 Identities=17% Similarity=0.216 Sum_probs=26.3
Q ss_pred CCCeEEEEeC----------------CCccHHHHHHHHHHCCccceeecccc
Q 031788 94 EEDRLVVGCQ----------------SGARSLHATADLLGAGFKHVSNFGGG 129 (153)
Q Consensus 94 ~~~~ivi~c~----------------~g~~a~~~~~~L~~~G~~~v~~l~gG 129 (153)
+++.+++-.+ +|..+...++.|...|++ |..+.|.
T Consensus 187 ~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~-V~~v~~~ 237 (399)
T PRK05579 187 AGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGAD-VTLVSGP 237 (399)
T ss_pred CCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCE-EEEeCCC
Confidence 4566776665 566788999999999987 7776654
No 264
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=35.79 E-value=1.6e+02 Score=20.78 Aligned_cols=59 Identities=27% Similarity=0.349 Sum_probs=34.2
Q ss_pred HHHHHHhC-CCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh--ccCCCeEEEEeCCCccHHHH
Q 031788 35 AAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL--CKEEDRLVVGCQSGARSLHA 111 (153)
Q Consensus 35 ~~~~~~~~-~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivi~c~~g~~a~~~ 111 (153)
.+.+.+++ +..++|......-. + .++| ++...+.+. .+..+.-|++|.+|.-...+
T Consensus 17 ~I~~~Lk~~g~~v~D~G~~~~~~------~--~dyp-------------~~a~~va~~v~~~~~d~GIliCGTGiG~~ia 75 (151)
T COG0698 17 IIIDHLKSKGYEVIDFGTYTDEG------S--VDYP-------------DYAKKVAEAVLNGEADLGILICGTGIGMSIA 75 (151)
T ss_pred HHHHHHHHCCCEEEeccccCCCC------C--cchH-------------HHHHHHHHHHHcCCCCeeEEEecCChhHHHH
Confidence 34555554 58899986543311 1 2222 343444333 23677899999999766666
Q ss_pred HHH
Q 031788 112 TAD 114 (153)
Q Consensus 112 ~~~ 114 (153)
+..
T Consensus 76 ANK 78 (151)
T COG0698 76 ANK 78 (151)
T ss_pred hhc
Confidence 654
No 265
>KOG1503 consensus Phosphoribosylpyrophosphate synthetase-associated protein [Amino acid transport and metabolism; Nucleotide transport and metabolism]
Probab=35.53 E-value=1.2e+02 Score=23.30 Aligned_cols=53 Identities=15% Similarity=0.123 Sum_probs=34.9
Q ss_pred cCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCCCccHHHHHHHHH
Q 031788 57 EGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLL 116 (153)
Q Consensus 57 ~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~ 116 (153)
+..|.|- .++|...+ -..|-|.+++.+.++..+.-|++..+...+.++..+..
T Consensus 135 qkeiqgf--f~~pvdnl-----raspfllqyiqe~ipdyrnavivaksp~~akka~syae 187 (354)
T KOG1503|consen 135 QKEIQGF--FSIPVDNL-----RASPFLLQYIQEEIPDYRNAVIVAKSPGVAKKAQSYAE 187 (354)
T ss_pred hHhhcce--eccccccc-----ccCHHHHHHHHHhCccccceEEEecCcchhhHHHhHHH
Confidence 4557766 88998532 23456777777778888888888776665555544443
No 266
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=35.49 E-value=55 Score=27.34 Aligned_cols=34 Identities=29% Similarity=0.150 Sum_probs=27.9
Q ss_pred CCCeEEEEeC---CCccHHHHHHHHHHCCccceeecc
Q 031788 94 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNFG 127 (153)
Q Consensus 94 ~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~~l~ 127 (153)
++++|+++++ +|.....+++.|++.|-..|++..
T Consensus 352 ~gk~VlLVDD~ItTGtTl~~~~~~Lr~aGAk~V~~~~ 388 (469)
T PRK05793 352 EGKRVVLIDDSIVRGTTSKRLVELLRKAGAKEVHFRV 388 (469)
T ss_pred CCCEEEEEccccCchHHHHHHHHHHHHcCCCEEEEEE
Confidence 6788999988 666678889999999998887554
No 267
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=35.32 E-value=39 Score=22.80 Aligned_cols=43 Identities=26% Similarity=0.341 Sum_probs=30.9
Q ss_pred ChHHHHHHHhhccCCCeEEEEeCCCccHHHHHHHHHHCCccceeeccc
Q 031788 81 NPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGG 128 (153)
Q Consensus 81 ~~~~~~~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~g 128 (153)
..++...+.++..++..+..||. +..+-+.|.+.||. |.-..|
T Consensus 69 s~e~~~~l~~~~~~~~~l~Tys~----a~~Vr~~L~~aGF~-v~~~~g 111 (124)
T PF05430_consen 69 SEELFKKLARLSKPGGTLATYSS----AGAVRRALQQAGFE-VEKVPG 111 (124)
T ss_dssp SHHHHHHHHHHEEEEEEEEES------BHHHHHHHHHCTEE-EEEEE-
T ss_pred CHHHHHHHHHHhCCCcEEEEeec----hHHHHHHHHHcCCE-EEEcCC
Confidence 45788888888778888888885 35577889999998 665543
No 268
>PRK10537 voltage-gated potassium channel; Provisional
Probab=34.89 E-value=90 Score=25.44 Aligned_cols=49 Identities=8% Similarity=0.039 Sum_probs=32.1
Q ss_pred CeEEEEeCCCccHHHHHHHHHHCCccceeecccc-HHHHHhCCCceecCCC
Q 031788 96 DRLVVGCQSGARSLHATADLLGAGFKHVSNFGGG-HMAWVQNGLKVKAREK 145 (153)
Q Consensus 96 ~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG-~~~w~~~g~~~~~~~~ 145 (153)
+.=+++|+.|..+..+++.|.+.|++ +.+++.- .+.-...+.++..+++
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~-vvVId~d~~~~~~~~g~~vI~GD~ 289 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQA-VTVIVPLGLEHRLPDDADLIPGDS 289 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCC-EEEEECchhhhhccCCCcEEEeCC
Confidence 44588899998899999999999976 5554432 2222224555555543
No 269
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=34.60 E-value=67 Score=23.52 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=24.7
Q ss_pred CCCeEEEEeC---CCccHHHHHHHHHHCCcccee
Q 031788 94 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVS 124 (153)
Q Consensus 94 ~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~ 124 (153)
+++.++++++ +|.....+.+.|.+.|-.+++
T Consensus 123 ~~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~ 156 (209)
T PRK00129 123 DERTVIVVDPMLATGGSAIAAIDLLKKRGAKNIK 156 (209)
T ss_pred CCCEEEEECCcccchHHHHHHHHHHHHcCCCEEE
Confidence 4577888765 777888999999999977764
No 270
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=34.55 E-value=51 Score=19.78 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=16.3
Q ss_pred eEEEEeCCCcc-HHHHHHHHHHC
Q 031788 97 RLVVGCQSGAR-SLHATADLLGA 118 (153)
Q Consensus 97 ~ivi~c~~g~~-a~~~~~~L~~~ 118 (153)
+++++|++|.. +......|++.
T Consensus 2 kilivC~~G~~~s~~l~~~l~~~ 24 (85)
T cd05568 2 KALVVCPSGIGTSRLLKSKLKKL 24 (85)
T ss_pred eEEEECCCCHHHHHHHHHHHHHH
Confidence 58999999875 45667777763
No 271
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=34.46 E-value=55 Score=27.10 Aligned_cols=34 Identities=29% Similarity=0.192 Sum_probs=27.8
Q ss_pred CCCeEEEEeC---CCccHHHHHHHHHHCCccceeecc
Q 031788 94 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNFG 127 (153)
Q Consensus 94 ~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~~l~ 127 (153)
++++|+++++ +|.....+++.|++.|-..|++..
T Consensus 339 ~gK~VlLVDDvitTG~Tl~~a~~~Lr~aGA~~V~v~~ 375 (445)
T PRK08525 339 EGKRIVVIDDSIVRGTTSKKIVSLLRAAGAKEIHLRI 375 (445)
T ss_pred CCCeEEEEecccCcHHHHHHHHHHHHhcCCCEEEEEE
Confidence 5789999988 666778899999999998876543
No 272
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=34.33 E-value=1.1e+02 Score=23.67 Aligned_cols=32 Identities=3% Similarity=-0.172 Sum_probs=22.8
Q ss_pred HHHHHHHHHHCCccceeeccccHHHHHhCCCce
Q 031788 108 SLHATADLLGAGFKHVSNFGGGHMAWVQNGLKV 140 (153)
Q Consensus 108 a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~ 140 (153)
+...|++++..|.+ |-++-..+..|.++..++
T Consensus 149 a~aiAE~fr~~G~~-Vlvl~DslTr~A~A~rEi 180 (274)
T cd01132 149 GCAMGEYFMDNGKH-ALIIYDDLSKQAVAYRQM 180 (274)
T ss_pred HHHHHHHHHHCCCC-EEEEEcChHHHHHHHHHH
Confidence 34667888889965 887778887776655443
No 273
>COG1204 Superfamily II helicase [General function prediction only]
Probab=34.12 E-value=1.5e+02 Score=26.53 Aligned_cols=84 Identities=13% Similarity=-0.069 Sum_probs=50.9
Q ss_pred cHHHHHHHHhCCCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCCCccHHHH
Q 031788 32 DVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHA 111 (153)
Q Consensus 32 ~~~~~~~~~~~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~g~~a~~~ 111 (153)
.+.++.++++.+...-|.|+...+..-...++ +...................+.....+..+..++++|.+...+...
T Consensus 192 N~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~--~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~ 269 (766)
T COG1204 192 NAEEVADWLNAKLVESDWRPVPLRRGVPYVGA--FLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKT 269 (766)
T ss_pred CHHHHHHHhCCcccccCCCCcccccCCccceE--EEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHH
Confidence 45778888876655678888777665444444 3222210100011112244444444478899999999998888888
Q ss_pred HHHHHH
Q 031788 112 TADLLG 117 (153)
Q Consensus 112 ~~~L~~ 117 (153)
|..|..
T Consensus 270 A~~l~~ 275 (766)
T COG1204 270 AKKLRI 275 (766)
T ss_pred HHHHHH
Confidence 888873
No 274
>PRK12828 short chain dehydrogenase; Provisional
Probab=34.06 E-value=77 Score=22.67 Aligned_cols=31 Identities=16% Similarity=0.096 Sum_probs=21.0
Q ss_pred CCeEEEEeCCCccHHHHHHHHHHCCccceeec
Q 031788 95 EDRLVVGCQSGARSLHATADLLGAGFKHVSNF 126 (153)
Q Consensus 95 ~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l 126 (153)
+++++|.+.+|.-+..+++.|.+.|++ |..+
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~~-v~~~ 37 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGAR-VALI 37 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCCe-EEEE
Confidence 566777777777777777777777765 4443
No 275
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=34.04 E-value=72 Score=22.90 Aligned_cols=26 Identities=19% Similarity=0.086 Sum_probs=14.0
Q ss_pred CeEEEEeCCCccHHHHHHHHHHCCcc
Q 031788 96 DRLVVGCQSGARSLHATADLLGAGFK 121 (153)
Q Consensus 96 ~~ivi~c~~g~~a~~~~~~L~~~G~~ 121 (153)
++++|...+|.-+..+++.|.+.|++
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~ 31 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAK 31 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCE
Confidence 34555555555555555555555554
No 276
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=34.02 E-value=76 Score=22.59 Aligned_cols=31 Identities=16% Similarity=0.100 Sum_probs=24.8
Q ss_pred CCCeEEEEeC---CCccHHHHHHHHHHCCcccee
Q 031788 94 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVS 124 (153)
Q Consensus 94 ~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~ 124 (153)
++++++++++ +|.....+++.|++.|-+.|.
T Consensus 119 ~gk~VLIVDDiitTG~Tl~aa~~~L~~~GA~~V~ 152 (178)
T PRK07322 119 KGKRVAIVDDVVSTGGTLTALERLVERAGGQVVA 152 (178)
T ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcCCEEEE
Confidence 5788999987 677777888899999977554
No 277
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=34.01 E-value=1.2e+02 Score=23.38 Aligned_cols=44 Identities=18% Similarity=0.302 Sum_probs=28.2
Q ss_pred HHHHHHHhh-cc-CCCeEEEEeCCCccHHHHHHHHHHCCccceeecc
Q 031788 83 DFLKKVRSL-CK-EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFG 127 (153)
Q Consensus 83 ~~~~~~~~~-~~-~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~ 127 (153)
-|...+.+. .+ +++++++. +.|+.+.-++..|...|+.+|.++.
T Consensus 112 G~~~~l~~~~~~~~~k~vlI~-GAGGagrAia~~La~~G~~~V~I~~ 157 (289)
T PRK12548 112 GFVRNLREHGVDVKGKKLTVI-GAGGAATAIQVQCALDGAKEITIFN 157 (289)
T ss_pred HHHHHHHhcCCCcCCCEEEEE-CCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 455555443 22 34555555 4566667778889999998887764
No 278
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=34.00 E-value=2.8e+02 Score=23.18 Aligned_cols=88 Identities=16% Similarity=0.110 Sum_probs=48.8
Q ss_pred ecHHHHHHHHh---C-C-CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCCC
Q 031788 31 VDVRAAKNLLE---S-G-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSG 105 (153)
Q Consensus 31 i~~~~~~~~~~---~-~-~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~g 105 (153)
++.+++.++++ + + -.+|.|+++.|.+..---|+..+-|..-.+. ...+ +.+-...+...++ +.+++++.+|
T Consensus 143 L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~~~a~iiGiNnRdL~-t~~v-d~~~~~~l~~~ip--~~~~~vseSG 218 (454)
T PRK09427 143 LDDEQYRQLAAVAHSLNMGVLTEVSNEEELERAIALGAKVIGINNRNLR-DLSI-DLNRTRELAPLIP--ADVIVISESG 218 (454)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHhCCCCEEEEeCCCCc-cceE-CHHHHHHHHhhCC--CCcEEEEeCC
Confidence 34455655554 2 4 4789999999998643334422322221110 0111 1233445555554 3467788899
Q ss_pred ccHHHHHHHHHHCCccce
Q 031788 106 ARSLHATADLLGAGFKHV 123 (153)
Q Consensus 106 ~~a~~~~~~L~~~G~~~v 123 (153)
..+..-+.+|+. |++.+
T Consensus 219 I~t~~d~~~~~~-~~dav 235 (454)
T PRK09427 219 IYTHAQVRELSP-FANGF 235 (454)
T ss_pred CCCHHHHHHHHh-cCCEE
Confidence 888777777765 67744
No 279
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=33.75 E-value=92 Score=22.49 Aligned_cols=47 Identities=15% Similarity=0.065 Sum_probs=34.8
Q ss_pred hHHHHHHHhhccCCCeEEEEeCCCccHHHHHHHHHHCCccceeecccc
Q 031788 82 PDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGG 129 (153)
Q Consensus 82 ~~~~~~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG 129 (153)
+.+.+.+.+.+.++..+++.+..........+.+.+.|+. +.+.+||
T Consensus 136 ~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~-~~~~~~~ 182 (202)
T PRK00121 136 PEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGF-LVSEAGD 182 (202)
T ss_pred HHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccc-ccccchh
Confidence 4677887777888998888887666667788888889975 4444443
No 280
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=33.74 E-value=68 Score=26.56 Aligned_cols=35 Identities=26% Similarity=0.154 Sum_probs=29.1
Q ss_pred CCCeEEEEeC---CCccHHHHHHHHHHCCccceeeccc
Q 031788 94 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNFGG 128 (153)
Q Consensus 94 ~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~~l~g 128 (153)
++++|+++++ +|.....+++.|++.|...|++...
T Consensus 337 ~gk~v~lvDD~ittG~T~~~~~~~l~~~ga~~v~~~~~ 374 (442)
T TIGR01134 337 RGKRVVLVDDSIVRGTTSRQIVKMLRDAGAKEVHVRIA 374 (442)
T ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEEc
Confidence 5789999988 6777888999999999988876554
No 281
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=33.73 E-value=81 Score=18.30 Aligned_cols=25 Identities=16% Similarity=0.093 Sum_probs=18.6
Q ss_pred eEEEEeC-CCccHHHHHHHHHHCCcc
Q 031788 97 RLVVGCQ-SGARSLHATADLLGAGFK 121 (153)
Q Consensus 97 ~ivi~c~-~g~~a~~~~~~L~~~G~~ 121 (153)
+|++|.. ++..+.++.+.|.+.|++
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~ 27 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGIS 27 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 5677776 556777888888888865
No 282
>PRK09620 hypothetical protein; Provisional
Probab=33.69 E-value=77 Score=23.70 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=23.2
Q ss_pred CeEEEEeC--CCccHHHHHHHHHHCCccceeeccc
Q 031788 96 DRLVVGCQ--SGARSLHATADLLGAGFKHVSNFGG 128 (153)
Q Consensus 96 ~~ivi~c~--~g~~a~~~~~~L~~~G~~~v~~l~g 128 (153)
++|-.+.+ +|..+...++.|...|++ |..+.|
T Consensus 18 D~VR~itN~SSGfiGs~LA~~L~~~Ga~-V~li~g 51 (229)
T PRK09620 18 DQVRGHTNMAKGTIGRIIAEELISKGAH-VIYLHG 51 (229)
T ss_pred CCeeEecCCCcCHHHHHHHHHHHHCCCe-EEEEeC
Confidence 33444444 677888999999999986 777765
No 283
>COG0848 ExbD Biopolymer transport protein [Intracellular trafficking and secretion]
Probab=33.56 E-value=1.6e+02 Score=20.20 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=28.0
Q ss_pred HHHHHHHhhc--cCCCeEEEEeCCCc---cHHHHHHHHHHCCccceeecc
Q 031788 83 DFLKKVRSLC--KEEDRLVVGCQSGA---RSLHATADLLGAGFKHVSNFG 127 (153)
Q Consensus 83 ~~~~~~~~~~--~~~~~ivi~c~~g~---~a~~~~~~L~~~G~~~v~~l~ 127 (153)
++...+.... +++.+|++-.+... .-..+...|++.|+.++....
T Consensus 83 ~l~~~l~~~~~~~~~~~v~i~aD~~v~y~~vv~vm~~l~~aG~~~v~L~t 132 (137)
T COG0848 83 ELEAALAALAKGKKNPRVVIRADKNVKYGTVVKVMDLLKEAGFKKVGLVT 132 (137)
T ss_pred HHHHHHHHHhcCCCCceEEEEeCCCCCHHHHHHHHHHHHHcCCceEEEEe
Confidence 6777776663 33333555544332 245677788999999987654
No 284
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=33.43 E-value=69 Score=25.07 Aligned_cols=34 Identities=12% Similarity=0.056 Sum_probs=27.0
Q ss_pred CCCeEEEEeC---CCccHHHHHHHHHHCCccceeecc
Q 031788 94 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNFG 127 (153)
Q Consensus 94 ~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~~l~ 127 (153)
+++.++++++ +|.....+++.|++.|...++.+.
T Consensus 201 ~g~~viivDDii~TG~Tl~~a~~~l~~~Ga~~v~~~~ 237 (302)
T PLN02369 201 KGKVAIMVDDMIDTAGTITKGAALLHQEGAREVYACA 237 (302)
T ss_pred CCCEEEEEcCcccchHHHHHHHHHHHhCCCCEEEEEE
Confidence 5677888866 677778889999999998876554
No 285
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=33.38 E-value=79 Score=22.81 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=25.2
Q ss_pred cCCCeEEEEeC---CCccHHHHHHHHHHCCccce
Q 031788 93 KEEDRLVVGCQ---SGARSLHATADLLGAGFKHV 123 (153)
Q Consensus 93 ~~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v 123 (153)
.++++|+++++ +|.....+++.|++.|.+.+
T Consensus 103 ~~G~~VLIVDDIi~TG~Tl~~a~~~l~~~Ga~vv 136 (187)
T TIGR01367 103 KPGEKFVAVEDVVTTGGSLLEAIRAIEGQGGQVV 136 (187)
T ss_pred CCCCEEEEEEeeecchHHHHHHHHHHHHcCCeEE
Confidence 47899999988 67777888899999997654
No 286
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=33.33 E-value=1.1e+02 Score=19.83 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=17.7
Q ss_pred HHHHHHHHHHCCccceeeccccHHHHHhCCCce
Q 031788 108 SLHATADLLGAGFKHVSNFGGGHMAWVQNGLKV 140 (153)
Q Consensus 108 a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~ 140 (153)
....++.|.++||+ ++.-.|...-..+.|.++
T Consensus 15 ~~~~a~~l~~~G~~-i~aT~gTa~~L~~~gi~~ 46 (116)
T cd01423 15 LLPTAQKLSKLGYK-LYATEGTADFLLENGIPV 46 (116)
T ss_pred HHHHHHHHHHCCCE-EEEccHHHHHHHHcCCCc
Confidence 45666677777776 555444344444445544
No 287
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=33.27 E-value=1.4e+02 Score=25.22 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=35.9
Q ss_pred ccCCCeEEEEeC---CCccHHHHHHHHHHCCccce--eec----cccHHHHHhCCCceec
Q 031788 92 CKEEDRLVVGCQ---SGARSLHATADLLGAGFKHV--SNF----GGGHMAWVQNGLKVKA 142 (153)
Q Consensus 92 ~~~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v--~~l----~gG~~~w~~~g~~~~~ 142 (153)
+.++++|+++.+ +|.....+++.|++.|..-+ .++ .||-....+.|+|+..
T Consensus 390 ~~~G~rVlIVDDViTTGgSi~eaie~l~~aG~~V~~v~vlVDR~~g~~~~L~~~gv~~~S 449 (477)
T PRK05500 390 FHPGETVVVVDDILITGKSVMEGAEKLKSAGLNVRDIVVFIDHEQGVKDKLQSHGYQAYS 449 (477)
T ss_pred CCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEECCcchHHHHHhcCCCEEE
Confidence 468899999988 88888999999999997632 222 2344444456776653
No 288
>PLN02293 adenine phosphoribosyltransferase
Probab=33.26 E-value=84 Score=22.72 Aligned_cols=32 Identities=25% Similarity=0.163 Sum_probs=26.3
Q ss_pred ccCCCeEEEEeC---CCccHHHHHHHHHHCCccce
Q 031788 92 CKEEDRLVVGCQ---SGARSLHATADLLGAGFKHV 123 (153)
Q Consensus 92 ~~~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v 123 (153)
+.++++++++++ +|.....+.+.|++.|-.-+
T Consensus 122 i~~G~rVlIVDDvitTG~T~~~~~~~l~~~Ga~~v 156 (187)
T PLN02293 122 VEPGERALVIDDLIATGGTLCAAINLLERAGAEVV 156 (187)
T ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHHCCCEEE
Confidence 458999999988 77778888999999997643
No 289
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=33.16 E-value=2.1e+02 Score=21.37 Aligned_cols=43 Identities=12% Similarity=0.030 Sum_probs=34.6
Q ss_pred cCCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHHHHHh
Q 031788 93 KEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQ 135 (153)
Q Consensus 93 ~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~ 135 (153)
.++..+.++.+.+.++.-.-....+.|.+||.++.+=.++..+
T Consensus 89 ~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~ 131 (215)
T COG0357 89 FPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQ 131 (215)
T ss_pred ccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccc
Confidence 4666699998888887776667778999999999988877654
No 290
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=33.09 E-value=84 Score=19.91 Aligned_cols=28 Identities=21% Similarity=0.171 Sum_probs=21.4
Q ss_pred CCCeEEEEeC------CCccHHHHHHHHHHCCcc
Q 031788 94 EEDRLVVGCQ------SGARSLHATADLLGAGFK 121 (153)
Q Consensus 94 ~~~~ivi~c~------~g~~a~~~~~~L~~~G~~ 121 (153)
.+.+|++|.. .|..+.++-+.|.+.|++
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~ 43 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVP 43 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCC
Confidence 4567888853 467788888899998875
No 291
>PLN02583 cinnamoyl-CoA reductase
Probab=32.89 E-value=76 Score=24.22 Aligned_cols=32 Identities=22% Similarity=0.247 Sum_probs=24.0
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHCCccceeec
Q 031788 94 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNF 126 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l 126 (153)
+.+.++|...+|..+..++..|.+.||+ |..+
T Consensus 5 ~~k~vlVTGatG~IG~~lv~~Ll~~G~~-V~~~ 36 (297)
T PLN02583 5 SSKSVCVMDASGYVGFWLVKRLLSRGYT-VHAA 36 (297)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCE-EEEE
Confidence 4556777766888888889999999986 5543
No 292
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=32.83 E-value=73 Score=28.81 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=30.6
Q ss_pred cCCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHHH
Q 031788 93 KEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMA 132 (153)
Q Consensus 93 ~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~ 132 (153)
.....++|+|++-.++..+++.|.+.|+ ..|.|.+..
T Consensus 270 e~g~~vLVF~NTv~~Aq~L~~~L~~~g~---~lLHG~m~q 306 (844)
T TIGR02621 270 DSGGAILVFCRTVKHVRKVFAKLPKEKF---ELLTGTLRG 306 (844)
T ss_pred hCCCcEEEEECCHHHHHHHHHHHHhcCC---eEeeCCCCH
Confidence 3557899999999999999999999887 677777643
No 293
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=32.81 E-value=1.5e+02 Score=19.56 Aligned_cols=44 Identities=9% Similarity=0.145 Sum_probs=28.9
Q ss_pred HHHHHHHhh--ccCCCeEEEEeCCCc---cHHHHHHHHHHCCccceeec
Q 031788 83 DFLKKVRSL--CKEEDRLVVGCQSGA---RSLHATADLLGAGFKHVSNF 126 (153)
Q Consensus 83 ~~~~~~~~~--~~~~~~ivi~c~~g~---~a~~~~~~L~~~G~~~v~~l 126 (153)
++...+.+. .+++.++++-.+... +...+...+++.|+.++...
T Consensus 71 ~L~~~l~~~~~~~~~~~v~I~aD~~~~~~~vv~v~d~~~~aG~~~v~l~ 119 (122)
T TIGR02803 71 TLGTALDALTEGDKDTTIFFRADKTVDYGDLMKVMNLLRQAGYLKIGLV 119 (122)
T ss_pred HHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 565666554 345666777665443 34567778899999988764
No 294
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=32.80 E-value=74 Score=23.30 Aligned_cols=31 Identities=23% Similarity=0.255 Sum_probs=24.4
Q ss_pred CCCeEEEEeC---CCccHHHHHHHHHHCCcccee
Q 031788 94 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVS 124 (153)
Q Consensus 94 ~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~ 124 (153)
+++.|+++++ +|.....+.+.|.+.|.+++.
T Consensus 121 ~~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~ 154 (207)
T TIGR01091 121 DERTVIVLDPMLATGGTMIAALDLLKKRGAKKIK 154 (207)
T ss_pred CCCEEEEECCCccchHHHHHHHHHHHHcCCCEEE
Confidence 4567777765 777888999999999987764
No 295
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=32.77 E-value=78 Score=22.96 Aligned_cols=26 Identities=12% Similarity=0.061 Sum_probs=13.9
Q ss_pred CeEEEEeCCCccHHHHHHHHHHCCcc
Q 031788 96 DRLVVGCQSGARSLHATADLLGAGFK 121 (153)
Q Consensus 96 ~~ivi~c~~g~~a~~~~~~L~~~G~~ 121 (153)
+.++|...+|.-+..+++.|.+.|++
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~ 31 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGAR 31 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCE
Confidence 44555544555555555555555554
No 296
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=32.67 E-value=1.1e+02 Score=25.43 Aligned_cols=33 Identities=6% Similarity=0.076 Sum_probs=25.7
Q ss_pred HHHHHHHHHHCCccceeeccccHHHHHhCCCcee
Q 031788 108 SLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVK 141 (153)
Q Consensus 108 a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~ 141 (153)
+...|++++..|.+ |-++-..+-.|.++..++.
T Consensus 233 a~tiAEyfrd~G~~-VLl~~Dsltr~A~A~REis 265 (433)
T PRK07594 233 ATTIAEFFRDNGKR-VVLLADSLTRYARAAREIA 265 (433)
T ss_pred HHHHHHHHHHCCCc-EEEEEeCHHHHHHHHHHHH
Confidence 44578889999975 8888889988888766554
No 297
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=32.62 E-value=1.2e+02 Score=22.36 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=30.5
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHCCccceeecccc
Q 031788 94 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGG 129 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG 129 (153)
.+-.+.+.|=....|+.++++|-+.|...+..+.+.
T Consensus 145 ~dv~iaiLtVPa~~AQ~vad~Lv~aGVkGIlNFtPv 180 (211)
T COG2344 145 NDVEIAILTVPAEHAQEVADRLVKAGVKGILNFTPV 180 (211)
T ss_pred cCccEEEEEccHHHHHHHHHHHHHcCCceEEeccce
Confidence 377789999888899999999999999887777654
No 298
>PLN02440 amidophosphoribosyltransferase
Probab=32.58 E-value=60 Score=27.21 Aligned_cols=35 Identities=31% Similarity=0.185 Sum_probs=28.5
Q ss_pred CCCeEEEEeC---CCccHHHHHHHHHHCCccceeeccc
Q 031788 94 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNFGG 128 (153)
Q Consensus 94 ~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~~l~g 128 (153)
++++|+++++ +|.....+++.|++.|...|++...
T Consensus 339 ~gk~VlLVDDiittGtTl~~i~~~L~~aGa~~V~v~v~ 376 (479)
T PLN02440 339 EGKRVVVVDDSIVRGTTSSKIVRMLREAGAKEVHMRIA 376 (479)
T ss_pred cCceEEEEeceeCcHHHHHHHHHHHHhcCCCEEEEEEE
Confidence 5688999988 6677788999999999988875544
No 299
>PF12404 DUF3663: Peptidase ; InterPro: IPR008330 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family represents the peptidase B group of leucyl aminopeptidases, which are restricted to the gammaproteobacteria. They contain a C-terminal aminopeptidase catalytic domain and an N-terminal domain of unknown function. They are zinc-dependent exopeptidases (3.4.11.1 from EC) and belong to MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF). They selectively release N-terminal amino acid residues from polypeptides and proteins and are involved in the processing, catabolism and degradation of intracellular proteins [, , ]. Leucyl aminopeptidase forms a homohexamer containing two trimers stacked on top of one another []. Each monomer binds two zinc ions. The zinc-binding and catalytic sites are located within the C-terminal catalytic domain []. The same catalytic aminopeptidase domain is found in the other M17 peptidases IPR011356 from INTERPRO. These two groups of aminopeptidases differ by their N-terminal domains. The N-terminal domain in members of IPR011356 from INTERPRO has been implicated in DNA binding [, ] and it is not associated with members of this family which have a different N-terminal domain and therefore are not expected to bind DNA or be involved in transcriptional regulation. In addition, there are related proteins with the same catalytic domain and unique N-terminal sequences unrelated to any of the two N-terminal domains discussed above. For additional information please see [, , , ]. ; GO: 0004177 aminopeptidase activity, 0008235 metalloexopeptidase activity, 0030145 manganese ion binding, 0005737 cytoplasm
Probab=32.53 E-value=39 Score=20.93 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=19.2
Q ss_pred HHHHHHHHHHCCccceeeccccH
Q 031788 108 SLHATADLLGAGFKHVSNFGGGH 130 (153)
Q Consensus 108 a~~~~~~L~~~G~~~v~~l~gG~ 130 (153)
-+++++.|...|+.+|..--.|+
T Consensus 40 IQrAaRkLd~qGI~~V~L~G~~W 62 (77)
T PF12404_consen 40 IQRAARKLDGQGIKNVALAGEGW 62 (77)
T ss_pred HHHHHHHHhhCCCceEEEecCCc
Confidence 57999999999999887665555
No 300
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=32.32 E-value=74 Score=20.85 Aligned_cols=21 Identities=10% Similarity=0.358 Sum_probs=15.8
Q ss_pred CeEEEEeCCCccHHHHHHHHH
Q 031788 96 DRLVVGCQSGARSLHATADLL 116 (153)
Q Consensus 96 ~~ivi~c~~g~~a~~~~~~L~ 116 (153)
++|.++|+.|.++...+...+
T Consensus 2 k~IlLvC~aGmSTSlLV~Km~ 22 (102)
T COG1440 2 KKILLVCAAGMSTSLLVTKMK 22 (102)
T ss_pred ceEEEEecCCCcHHHHHHHHH
Confidence 578999999988766665543
No 301
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=32.29 E-value=77 Score=24.37 Aligned_cols=45 Identities=16% Similarity=0.099 Sum_probs=31.1
Q ss_pred HHHHHHHhhc----cCCCeEEEEeCCCccHHHHHHHHHHCCccceeeccc
Q 031788 83 DFLKKVRSLC----KEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGG 128 (153)
Q Consensus 83 ~~~~~~~~~~----~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~g 128 (153)
-|...+.+.. -++++++++ +.|..+.-++..|.+.|+.+++++.=
T Consensus 109 G~~~~l~~~~~~~~~~~k~vlvl-GaGGaarai~~aL~~~G~~~i~I~nR 157 (282)
T TIGR01809 109 GIAGALANIGKFEPLAGFRGLVI-GAGGTSRAAVYALASLGVTDITVINR 157 (282)
T ss_pred HHHHHHHhhCCccccCCceEEEE-cCcHHHHHHHHHHHHcCCCeEEEEeC
Confidence 4555554431 145667776 56777788888999999998888754
No 302
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=32.25 E-value=1.4e+02 Score=24.67 Aligned_cols=33 Identities=6% Similarity=-0.039 Sum_probs=25.0
Q ss_pred HHHHHHHHHHCCccceeeccccHHHHHhCCCcee
Q 031788 108 SLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVK 141 (153)
Q Consensus 108 a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~ 141 (153)
+...|+++++.|. +|-++...+-.|.++..++.
T Consensus 218 a~~iAEyfrd~G~-~Vll~~DslTr~A~A~REis 250 (418)
T TIGR03498 218 ATAIAEYFRDQGK-DVLLLMDSVTRFAMAQREIG 250 (418)
T ss_pred HHHHHHHHHHcCC-CEEEeccchhHHHHHHHHHH
Confidence 4456888999995 58888888988888766554
No 303
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=32.24 E-value=84 Score=29.03 Aligned_cols=37 Identities=19% Similarity=0.135 Sum_probs=31.1
Q ss_pred ccCCCeEEEEeCCCccHHHHHHHHHHCCccceeecccc
Q 031788 92 CKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGG 129 (153)
Q Consensus 92 ~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG 129 (153)
...+++++|.|.+-..+..++..|...|++. ..|.+.
T Consensus 595 ~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h-~vLnak 631 (1025)
T PRK12900 595 QKKGQPVLVGTASVEVSETLSRMLRAKRIAH-NVLNAK 631 (1025)
T ss_pred hhCCCCEEEEeCcHHHHHHHHHHHHHcCCCc-eeecCC
Confidence 4578999999999889999999999999984 456543
No 304
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=32.21 E-value=62 Score=27.12 Aligned_cols=35 Identities=20% Similarity=0.091 Sum_probs=28.1
Q ss_pred CCCeEEEEeC---CCccHHHHHHHHHHCCccceeeccc
Q 031788 94 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNFGG 128 (153)
Q Consensus 94 ~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~~l~g 128 (153)
++++|+++++ +|.....+++.|++.|-..|++...
T Consensus 355 ~gk~VlLVDDsittGtTl~~~~~~L~~aGak~V~~ri~ 392 (474)
T PRK06388 355 SGKRIVLVDDSIVRGNTMRFIVKIMRKYGAKEVHVRIG 392 (474)
T ss_pred cCceEEEEeCeECcHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 5688999988 5666778899999999888876543
No 305
>PRK09694 helicase Cas3; Provisional
Probab=32.20 E-value=86 Score=28.51 Aligned_cols=49 Identities=8% Similarity=0.095 Sum_probs=37.6
Q ss_pred HHHHHHHhhccCCCeEEEEeCCCccHHHHHHHHHHCCc--cceeeccccHH
Q 031788 83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGF--KHVSNFGGGHM 131 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~~~G~--~~v~~l~gG~~ 131 (153)
.+.+.+.+....++.++++|++-.++..+++.|++.+. .++..+.+.+.
T Consensus 548 ~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~ 598 (878)
T PRK09694 548 TLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFT 598 (878)
T ss_pred HHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCC
Confidence 45555555456788999999999999999999998753 25888888753
No 306
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=31.98 E-value=1.3e+02 Score=25.04 Aligned_cols=57 Identities=12% Similarity=0.061 Sum_probs=36.4
Q ss_pred HHHHHHHhhccCCCeEEEEeCCCcc----------HHHHHHHHHHCCccceeeccccHHHHHhCCCce
Q 031788 83 DFLKKVRSLCKEEDRLVVGCQSGAR----------SLHATADLLGAGFKHVSNFGGGHMAWVQNGLKV 140 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~ivi~c~~g~~----------a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~ 140 (153)
+|++.........+.|+++..+... +-..|+++++.|.+ |-.+-+..-.|..+..++
T Consensus 206 EFIE~~Lg~egl~rsViVvATSD~s~l~R~~aa~~At~IAEyFRDqG~~-VLL~mDSlTRfA~AqREI 272 (441)
T COG1157 206 EFIEKDLGEEGLKRSVVVVATSDESALMRLKAAFTATTIAEYFRDQGKR-VLLIMDSLTRFAMAQREI 272 (441)
T ss_pred HHHHHhcchhhccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCe-EEEEeecHHHHHHHHHHH
Confidence 5555433322345667777665432 34567889999965 888888988888765444
No 307
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=31.37 E-value=61 Score=22.40 Aligned_cols=42 Identities=26% Similarity=0.528 Sum_probs=22.1
Q ss_pred CCCcceeCccccccCCCCCCCCh----HHHHHHHhhccCCCeEEEEeCCCc
Q 031788 60 VDAAKIFNIPYMFNTPEGRVKNP----DFLKKVRSLCKEEDRLVVGCQSGA 106 (153)
Q Consensus 60 i~ga~~i~ip~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ivi~c~~g~ 106 (153)
-+|..+..||..+. ..+.+ .|.+.+..+ +++..++++|..|.
T Consensus 90 ~~g~~Y~Ripitd~----~~P~~~~iD~fi~~v~~~-p~~~~l~fhC~~G~ 135 (149)
T PF14566_consen 90 GNGLRYYRIPITDH----QAPDPEDIDAFINFVKSL-PKDTWLHFHCQAGR 135 (149)
T ss_dssp HTT-EEEEEEE-TT----S---HHHHHHHHHHHHTS--TT-EEEEE-SSSS
T ss_pred cCCceEEEEeCCCc----CCCCHHHHHHHHHHHHhC-CCCCeEEEECCCCC
Confidence 34556667776432 22222 556666665 78899999999774
No 308
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=31.29 E-value=1.5e+02 Score=19.24 Aligned_cols=39 Identities=26% Similarity=0.204 Sum_probs=28.2
Q ss_pred hHHHHHHHhhccCCCe-EEEEeCCCccHHHHHHHHHHCCcc
Q 031788 82 PDFLKKVRSLCKEEDR-LVVGCQSGARSLHATADLLGAGFK 121 (153)
Q Consensus 82 ~~~~~~~~~~~~~~~~-ivi~c~~g~~a~~~~~~L~~~G~~ 121 (153)
++|.+++.+.+++++. +++.+ +.....++.+.|.+.|-+
T Consensus 42 d~~~~ev~~~L~~GssAl~~lv-~~~~~d~v~~~l~~~gg~ 81 (102)
T PF06897_consen 42 DEFIKEVGEALKPGSSALFLLV-DEATEDKVDAALRKFGGK 81 (102)
T ss_pred HHHHHHHHhhcCCCceEEEEEe-ccCCHHHHHHHHHhcCCE
Confidence 3788999888777777 44445 445667888889988844
No 309
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=31.17 E-value=47 Score=24.48 Aligned_cols=27 Identities=26% Similarity=0.483 Sum_probs=17.1
Q ss_pred HHHHHHHHCCccceeeccc-cHHHHHhC
Q 031788 110 HATADLLGAGFKHVSNFGG-GHMAWVQN 136 (153)
Q Consensus 110 ~~~~~L~~~G~~~v~~l~g-G~~~w~~~ 136 (153)
.+.+.|...|+.||.+..| |..+|...
T Consensus 112 ~A~~~l~~~~~~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 112 RARRNLARLGIDNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred HHHHHHHHhccCceeEEEcchhhccccC
Confidence 4444566678888876654 56667553
No 310
>PRK12829 short chain dehydrogenase; Provisional
Probab=31.10 E-value=90 Score=22.84 Aligned_cols=33 Identities=15% Similarity=0.120 Sum_probs=25.9
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHCCccceeecc
Q 031788 94 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFG 127 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~ 127 (153)
++++++|...+|.-+..++..|.+.|++ |..+.
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~~-V~~~~ 42 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGAR-VHVCD 42 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEe
Confidence 5678888888888888888888888886 65553
No 311
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=31.01 E-value=1.1e+02 Score=27.16 Aligned_cols=53 Identities=13% Similarity=0.066 Sum_probs=36.5
Q ss_pred HHHHHHHhhccCCCeEEEEeCCCc----cHHHHHHHHHHCCccceeeccccH------HHHHhCCC
Q 031788 83 DFLKKVRSLCKEEDRLVVGCQSGA----RSLHATADLLGAGFKHVSNFGGGH------MAWVQNGL 138 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~ivi~c~~g~----~a~~~~~~L~~~G~~~v~~l~gG~------~~w~~~g~ 138 (153)
++.+... ..+-.+|++|.... ....+++.|++.|.+++.++.||. ..|.+.|.
T Consensus 624 ~~v~aa~---~~~a~ivvlcs~d~~~~e~~~~l~~~Lk~~G~~~v~vl~GG~~~~~~~~~l~~aGv 686 (714)
T PRK09426 624 EAARQAV---ENDVHVVGVSSLAAGHKTLVPALIEALKKLGREDIMVVVGGVIPPQDYDFLYEAGV 686 (714)
T ss_pred HHHHHHH---HcCCCEEEEeccchhhHHHHHHHHHHHHhcCCCCcEEEEeCCCChhhHHHHHhCCC
Confidence 4444443 35777999998332 356888899999988898888874 24555565
No 312
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=30.70 E-value=1.1e+02 Score=21.02 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=27.4
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHCCccceeecc
Q 031788 94 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFG 127 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~ 127 (153)
.+++++++.++......++..|.+.|.+ |...+
T Consensus 27 ~gk~v~VvGrs~~vG~pla~lL~~~gat-V~~~~ 59 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPLQCLLQRDGAT-VYSCD 59 (140)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEeC
Confidence 6788999988888899999999998876 55554
No 313
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=30.55 E-value=1.5e+02 Score=20.16 Aligned_cols=18 Identities=17% Similarity=0.145 Sum_probs=12.2
Q ss_pred HHHHHHHHHHCCccceee
Q 031788 108 SLHATADLLGAGFKHVSN 125 (153)
Q Consensus 108 a~~~~~~L~~~G~~~v~~ 125 (153)
.......|+++|++.++.
T Consensus 101 ~~~~~~~l~~~G~~~vf~ 118 (137)
T PRK02261 101 FEEVEKKFKEMGFDRVFP 118 (137)
T ss_pred hHHHHHHHHHcCCCEEEC
Confidence 445567888888875543
No 314
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=30.53 E-value=1.4e+02 Score=18.49 Aligned_cols=43 Identities=14% Similarity=0.080 Sum_probs=25.6
Q ss_pred HHHHHHHhhccCCCeE-EEEeCC-CccHHHHHHHHHHCCccceeec
Q 031788 83 DFLKKVRSLCKEEDRL-VVGCQS-GARSLHATADLLGAGFKHVSNF 126 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~i-vi~c~~-g~~a~~~~~~L~~~G~~~v~~l 126 (153)
.+.+.+.+..+ +.++ +.|... ...-..+.+.|...|+++|.++
T Consensus 21 ~~~~~l~~~~~-~~~v~~a~~~~~~P~i~~~l~~l~~~g~~~vvvv 65 (101)
T cd03409 21 AQAHNLAESLP-DFPYYVGFQSGLGPDTEEAIRELAEEGYQRVVIV 65 (101)
T ss_pred HHHHHHHHHCC-CCCEEEEEECCCCCCHHHHHHHHHHcCCCeEEEE
Confidence 34444444332 3333 334444 5567788899999999987654
No 315
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=30.41 E-value=1.7e+02 Score=22.53 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=30.6
Q ss_pred HHHHHHHhhccCCCeEEEEeCCCccHHHHHHHHHHCCcc
Q 031788 83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFK 121 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~ 121 (153)
++...+.++...+..+|++|..+..+..+.+.+++.|+.
T Consensus 180 d~~~~l~~i~~~~~dvvi~~~~~~~~~~~~~~a~~~g~~ 218 (350)
T cd06366 180 DITDALKKLKEKDSRVIVVHFSPDLARRVFCEAYKLGMM 218 (350)
T ss_pred HHHHHHHHHhcCCCeEEEEECChHHHHHHHHHHHHcCCc
Confidence 777777776445566888888877888888999999984
No 316
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=30.16 E-value=67 Score=21.57 Aligned_cols=14 Identities=14% Similarity=0.230 Sum_probs=9.3
Q ss_pred HHHHHHHHHHCCcc
Q 031788 108 SLHATADLLGAGFK 121 (153)
Q Consensus 108 a~~~~~~L~~~G~~ 121 (153)
...+.+.|++.|++
T Consensus 40 ~~~a~~~l~e~Gid 53 (129)
T TIGR02691 40 NPNAVKAMKEVGID 53 (129)
T ss_pred CHHHHHHHHHcCCC
Confidence 45666677777764
No 317
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=30.02 E-value=34 Score=22.05 Aligned_cols=27 Identities=19% Similarity=0.143 Sum_probs=18.6
Q ss_pred CCcceeecHHHHHHHHhCCCeEEecCC
Q 031788 25 GAEVITVDVRAAKNLLESGYGYLDVRT 51 (153)
Q Consensus 25 ~~~~~~i~~~~~~~~~~~~~~iIDvR~ 51 (153)
...+..++.+++...+..+.+|||+|.
T Consensus 76 h~~f~~l~~~~~~~~~~~~~~iiD~~~ 102 (106)
T PF03720_consen 76 HDEFRELDWEEIAKLMRKPPVIIDGRN 102 (106)
T ss_dssp -GGGGCCGHHHHHHHSCSSEEEEESSS
T ss_pred CHHHhccCHHHHHHhcCCCCEEEECcc
Confidence 444556777777777766678888886
No 318
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=29.91 E-value=95 Score=21.28 Aligned_cols=35 Identities=23% Similarity=0.179 Sum_probs=22.7
Q ss_pred CeEEEEeCCC-ccHHHHHHHHHHCCccceeeccccH
Q 031788 96 DRLVVGCQSG-ARSLHATADLLGAGFKHVSNFGGGH 130 (153)
Q Consensus 96 ~~ivi~c~~g-~~a~~~~~~L~~~G~~~v~~l~gG~ 130 (153)
.+|+++|.+. -||+.|-..++...-+++.+...|.
T Consensus 3 ~kVLFVC~gN~cRSpmAE~l~~~~~~~~~~v~SAGt 38 (139)
T COG0394 3 MKVLFVCTGNICRSPMAEALLRHLAPDNVEVDSAGT 38 (139)
T ss_pred ceEEEEcCCCcccCHHHHHHHHHhccCCeEEECCcc
Confidence 4678888633 3777777777665436677666664
No 319
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=29.57 E-value=78 Score=25.18 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=25.7
Q ss_pred CCCeEEEEeC---CCccHHHHHHHHHHCCcccee
Q 031788 94 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVS 124 (153)
Q Consensus 94 ~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~ 124 (153)
+++.++++++ +|..-..+++.|++.|-..++
T Consensus 229 ~gr~vlIVDDIidTG~Tl~~aa~~L~~~Ga~~V~ 262 (326)
T PLN02297 229 AGRHVVIVDDLVQSGGTLIECQKVLAAHGAAKVS 262 (326)
T ss_pred CCCeEEEEecccCcHHHHHHHHHHHHHCCCcEEE
Confidence 5678899876 777778999999999998775
No 320
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=29.47 E-value=94 Score=17.24 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=16.9
Q ss_pred eEEEEeC-CCccHHHHHHHHHHCCcc
Q 031788 97 RLVVGCQ-SGARSLHATADLLGAGFK 121 (153)
Q Consensus 97 ~ivi~c~-~g~~a~~~~~~L~~~G~~ 121 (153)
+|++|.. .+..+..+...|.+.|++
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~ 26 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIE 26 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCc
Confidence 3566665 556677777778877765
No 321
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=29.45 E-value=90 Score=19.26 Aligned_cols=10 Identities=30% Similarity=0.238 Sum_probs=5.6
Q ss_pred HHHHHHCCcc
Q 031788 112 TADLLGAGFK 121 (153)
Q Consensus 112 ~~~L~~~G~~ 121 (153)
+.+|++.|++
T Consensus 23 a~~L~~~Gi~ 32 (90)
T smart00851 23 AKFLREAGLP 32 (90)
T ss_pred HHHHHHCCCc
Confidence 4555566654
No 322
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=29.34 E-value=73 Score=26.48 Aligned_cols=33 Identities=15% Similarity=0.204 Sum_probs=26.3
Q ss_pred CCCeEEEEeC---CCccHHHHHHHHHHCCccceeec
Q 031788 94 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNF 126 (153)
Q Consensus 94 ~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~~l 126 (153)
+++.+|++++ +|..-..+++.|++.|...|+.+
T Consensus 334 ~Gk~vIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~~~ 369 (439)
T PTZ00145 334 YDSDVIIVDDMIDTSGTLCEAAKQLKKHGARRVFAF 369 (439)
T ss_pred CCCEEEEEcceeCcHHHHHHHHHHHHHcCCCEEEEE
Confidence 5577888866 66777899999999999887643
No 323
>PRK07814 short chain dehydrogenase; Provisional
Probab=29.29 E-value=1e+02 Score=22.87 Aligned_cols=26 Identities=15% Similarity=0.067 Sum_probs=14.7
Q ss_pred CCeEEEEeCCCccHHHHHHHHHHCCc
Q 031788 95 EDRLVVGCQSGARSLHATADLLGAGF 120 (153)
Q Consensus 95 ~~~ivi~c~~g~~a~~~~~~L~~~G~ 120 (153)
++.++|...++.-+...++.|.+.|+
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G~ 35 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAGA 35 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC
Confidence 44555555555555556666666665
No 324
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=29.28 E-value=1.1e+02 Score=22.34 Aligned_cols=31 Identities=16% Similarity=0.281 Sum_probs=24.2
Q ss_pred CCCeEEEEeC---CCccHHHHHHHHHHCCc--ccee
Q 031788 94 EEDRLVVGCQ---SGARSLHATADLLGAGF--KHVS 124 (153)
Q Consensus 94 ~~~~ivi~c~---~g~~a~~~~~~L~~~G~--~~v~ 124 (153)
.++.+++.++ +|.....+.+.|.+.|. +++.
T Consensus 120 ~~~~VillDpmlaTG~s~~~ai~~L~~~G~~~~~I~ 155 (207)
T PF14681_consen 120 ENRKVILLDPMLATGGSAIAAIEILKEHGVPEENII 155 (207)
T ss_dssp TTSEEEEEESEESSSHHHHHHHHHHHHTTG-GGEEE
T ss_pred cCCEEEEEeccccchhhHHHHHHHHHHcCCCcceEE
Confidence 4577887755 88899999999999997 4443
No 325
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=29.25 E-value=83 Score=25.62 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=25.7
Q ss_pred CCCeEEEEeC---CCccHHHHHHHHHHCCccceee
Q 031788 94 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSN 125 (153)
Q Consensus 94 ~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~~ 125 (153)
+++.++++++ +|..-..+++.|++.|...++.
T Consensus 263 ~gr~vIIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~ 297 (382)
T PRK06827 263 EGKDVLIVDDMIASGGSMIDAAKELKSRGAKKIIV 297 (382)
T ss_pred CCCEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEE
Confidence 4567888866 7777789999999999987753
No 326
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=29.15 E-value=1.2e+02 Score=22.36 Aligned_cols=44 Identities=23% Similarity=0.283 Sum_probs=29.6
Q ss_pred HHHHHHHhhccCCCeEEEE-eC-CCccHHHHHHHHHHCCccceeecc
Q 031788 83 DFLKKVRSLCKEEDRLVVG-CQ-SGARSLHATADLLGAGFKHVSNFG 127 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~ivi~-c~-~g~~a~~~~~~L~~~G~~~v~~l~ 127 (153)
+|.+....+.+...+|+++ |+ +|..++.++.+|...|++ ++++.
T Consensus 27 ~~~~a~~~i~~~~gkv~V~G~GkSG~Igkk~Aa~L~s~G~~-a~fv~ 72 (202)
T COG0794 27 DFVRAVELILECKGKVFVTGVGKSGLIGKKFAARLASTGTP-AFFVG 72 (202)
T ss_pred HHHHHHHHHHhcCCcEEEEcCChhHHHHHHHHHHHHccCCc-eEEec
Confidence 5555554444445555555 33 666788999999999987 77775
No 327
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=29.10 E-value=88 Score=20.50 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=20.8
Q ss_pred cCCCeEEEEeCCC--ccHHHHHHHHHHCCcc
Q 031788 93 KEEDRLVVGCQSG--ARSLHATADLLGAGFK 121 (153)
Q Consensus 93 ~~~~~ivi~c~~g--~~a~~~~~~L~~~G~~ 121 (153)
.+++.+.++|-+. ..+..+++.|.+.|++
T Consensus 7 ~~g~di~iia~G~~~~~al~A~~~L~~~Gi~ 37 (124)
T PF02780_consen 7 REGADITIIAYGSMVEEALEAAEELEEEGIK 37 (124)
T ss_dssp ESSSSEEEEEETTHHHHHHHHHHHHHHTTCE
T ss_pred eCCCCEEEEeehHHHHHHHHHHHHHHHcCCc
Confidence 4566677776544 3577889999998875
No 328
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=28.85 E-value=1e+02 Score=20.68 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=26.3
Q ss_pred EEEeCCCccHHHHHHHHHHCCccceeeccccHHH
Q 031788 99 VVGCQSGARSLHATADLLGAGFKHVSNFGGGHMA 132 (153)
Q Consensus 99 vi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~ 132 (153)
|++++-|.-+..++..|...|+.++.+++...-.
T Consensus 2 VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~ 35 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVGKITLIDFDTVE 35 (143)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcC
Confidence 3445567778889999999999989888877543
No 329
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=28.62 E-value=1e+02 Score=22.45 Aligned_cols=26 Identities=19% Similarity=0.144 Sum_probs=12.9
Q ss_pred CeEEEEeCCCccHHHHHHHHHHCCcc
Q 031788 96 DRLVVGCQSGARSLHATADLLGAGFK 121 (153)
Q Consensus 96 ~~ivi~c~~g~~a~~~~~~L~~~G~~ 121 (153)
+.++|...+|.-+..+++.|.+.|++
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~ 30 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAK 30 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCe
Confidence 34444444444455555555555543
No 330
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.59 E-value=86 Score=26.47 Aligned_cols=32 Identities=25% Similarity=0.380 Sum_probs=24.2
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHCCccceeecc
Q 031788 94 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFG 127 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~ 127 (153)
+.+.|||+ +.|...--+|+.|.+.|++ |.+|+
T Consensus 14 ~~~~VIVI-GAGiaGLsAArqL~~~G~~-V~VLE 45 (501)
T KOG0029|consen 14 KKKKVIVI-GAGLAGLSAARQLQDFGFD-VLVLE 45 (501)
T ss_pred CCCcEEEE-CCcHHHHHHHHHHHHcCCc-eEEEe
Confidence 34456666 5777778899999999998 66654
No 331
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=28.52 E-value=2e+02 Score=21.25 Aligned_cols=49 Identities=24% Similarity=0.302 Sum_probs=33.7
Q ss_pred cCCCeEEEEeC---CCccHHHHHHHHHHCCcccee---ec---cccHHHHHhCCCcee
Q 031788 93 KEEDRLVVGCQ---SGARSLHATADLLGAGFKHVS---NF---GGGHMAWVQNGLKVK 141 (153)
Q Consensus 93 ~~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~---~l---~gG~~~w~~~g~~~~ 141 (153)
.++++++++.+ +|.....+++.+++.|.+-+. ++ .|+-....+.|.++.
T Consensus 110 ~~G~kVvvVEDViTTG~Si~eai~~l~~~G~~V~gv~~ivDR~~~~~~~~~~~g~~~~ 167 (201)
T COG0461 110 VKGEKVVVVEDVITTGGSILEAVEALREAGAEVVGVAVIVDRQSGAKEVLKEYGVKLV 167 (201)
T ss_pred CCCCEEEEEEecccCCHhHHHHHHHHHHcCCeEEEEEEEEecchhHHHHHHhcCCceE
Confidence 47888998877 778888999999999986321 22 233444555676554
No 332
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=28.49 E-value=2.1e+02 Score=19.99 Aligned_cols=59 Identities=25% Similarity=0.316 Sum_probs=35.0
Q ss_pred HHHHHHh-CCCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh--ccCCCeEEEEeCCCccHHHH
Q 031788 35 AAKNLLE-SGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL--CKEEDRLVVGCQSGARSLHA 111 (153)
Q Consensus 35 ~~~~~~~-~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivi~c~~g~~a~~~ 111 (153)
.+.++++ .+..++|.-+..+ .. + . +|. ++...+.+. -.+.+.-|++|.+|.-...+
T Consensus 17 ~l~~~L~~~g~eV~D~G~~~~-~~-----~--~--dYp-----------d~a~~va~~V~~g~~~~GIliCGtGiG~sia 75 (148)
T PRK05571 17 EIIEHLEELGHEVIDLGPDSY-DA-----S--V--DYP-----------DYAKKVAEAVVAGEADRGILICGTGIGMSIA 75 (148)
T ss_pred HHHHHHHHCCCEEEEcCCCCC-CC-----C--C--CHH-----------HHHHHHHHHHHcCCCCEEEEEcCCcHHHHHH
Confidence 3455555 4688999876432 10 1 2 221 455555554 24567899999999766655
Q ss_pred HHH
Q 031788 112 TAD 114 (153)
Q Consensus 112 ~~~ 114 (153)
+..
T Consensus 76 ANK 78 (148)
T PRK05571 76 ANK 78 (148)
T ss_pred Hhc
Confidence 554
No 333
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=28.45 E-value=2.3e+02 Score=20.64 Aligned_cols=45 Identities=20% Similarity=0.294 Sum_probs=33.5
Q ss_pred HHHHHHHhhccCCCeEEEEeCCCcc--HHHHHHHHHHCCccceeeccc
Q 031788 83 DFLKKVRSLCKEEDRLVVGCQSGAR--SLHATADLLGAGFKHVSNFGG 128 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~ivi~c~~g~~--a~~~~~~L~~~G~~~v~~l~g 128 (153)
-|.+.+....++++-+++++.+|.. -..+++.+++.|.. +-.+.|
T Consensus 98 ~f~~ql~~~~~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~-vI~IT~ 144 (196)
T PRK10886 98 VYAKQVRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMT-IVALTG 144 (196)
T ss_pred HHHHHHHHcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence 5666666667888888999888864 45778889999977 555554
No 334
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=28.44 E-value=3.1e+02 Score=22.01 Aligned_cols=50 Identities=22% Similarity=0.204 Sum_probs=36.7
Q ss_pred CeEEEEe-CCCccH--HHH-HHHHHHCCccceeeccccHHHHHhCCCceecCCC
Q 031788 96 DRLVVGC-QSGARS--LHA-TADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREK 145 (153)
Q Consensus 96 ~~ivi~c-~~g~~a--~~~-~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~~ 145 (153)
++-|++| +.|... .++ -+.+.+.|-++|+.+..++.+-..++.|+..+..
T Consensus 101 ~prI~i~vP~g~T~VErrAi~ea~~~aGa~~V~lieEp~aAAIGaglpi~ep~G 154 (342)
T COG1077 101 KPRIVICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAAIGAGLPIMEPTG 154 (342)
T ss_pred CCcEEEEecCCccHHHHHHHHHHHHhccCceEEEeccHHHHHhcCCCcccCCCC
Confidence 3345555 455432 344 4567789999999999999999999999987764
No 335
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=28.25 E-value=79 Score=25.73 Aligned_cols=37 Identities=24% Similarity=0.463 Sum_probs=28.6
Q ss_pred CCCeEEEEeCC--C----ccHHHHHHHHHHC--CccceeeccccHH
Q 031788 94 EEDRLVVGCQS--G----ARSLHATADLLGA--GFKHVSNFGGGHM 131 (153)
Q Consensus 94 ~~~~ivi~c~~--g----~~a~~~~~~L~~~--G~~~v~~l~gG~~ 131 (153)
+-.+|++||.. | .|+.+.++.|.+- |++ |.++.||-.
T Consensus 8 ~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~-Il~IsG~~~ 52 (400)
T COG4671 8 KRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFD-ILIISGGPP 52 (400)
T ss_pred ccceEEEEehhhccchHHHHHHHHHHHHhhcccCce-EEEEeCCCc
Confidence 34589999982 3 3678889999876 988 999999853
No 336
>PRK06198 short chain dehydrogenase; Provisional
Probab=28.21 E-value=1.1e+02 Score=22.41 Aligned_cols=6 Identities=33% Similarity=0.446 Sum_probs=2.8
Q ss_pred EEEEeC
Q 031788 98 LVVGCQ 103 (153)
Q Consensus 98 ivi~c~ 103 (153)
|++++.
T Consensus 34 V~~~~r 39 (260)
T PRK06198 34 LVICGR 39 (260)
T ss_pred EEEEcC
Confidence 444444
No 337
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=28.12 E-value=1e+02 Score=25.27 Aligned_cols=34 Identities=12% Similarity=0.070 Sum_probs=28.3
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHCCccceeeccc
Q 031788 94 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGG 128 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~g 128 (153)
....+|+++..|.-....+.++++.|| +|+.++-
T Consensus 69 ~~~s~iV~D~KgEl~~~t~~~r~~~G~-~V~vldp 102 (469)
T PF02534_consen 69 YPGSMIVTDPKGELYEKTAGYRKKRGY-KVYVLDP 102 (469)
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHCCC-EEEEeec
Confidence 345899999999888888999999999 5887764
No 338
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=28.05 E-value=55 Score=27.44 Aligned_cols=44 Identities=23% Similarity=0.331 Sum_probs=34.8
Q ss_pred EEEEeCCCccHHHHHHHHHHCCccceeeccccH---------HHHHhCCCceec
Q 031788 98 LVVGCQSGARSLHATADLLGAGFKHVSNFGGGH---------MAWVQNGLKVKA 142 (153)
Q Consensus 98 ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~---------~~w~~~g~~~~~ 142 (153)
=|+||++.....+.+=.|...|+. ...|..|. ++|.++..|+.-
T Consensus 258 GIVYCRTR~~cEq~AI~l~~~Gi~-A~AYHAGLK~~ERTeVQe~WM~~~~PvI~ 310 (641)
T KOG0352|consen 258 GIVYCRTRNECEQVAIMLEIAGIP-AMAYHAGLKKKERTEVQEKWMNNEIPVIA 310 (641)
T ss_pred eEEEeccHHHHHHHHHHhhhcCcc-hHHHhcccccchhHHHHHHHhcCCCCEEE
Confidence 699999888888888899999987 55666665 469988888753
No 339
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=28.00 E-value=1e+02 Score=22.17 Aligned_cols=17 Identities=35% Similarity=0.583 Sum_probs=13.1
Q ss_pred cCCCeEEEEeCCCc-cHH
Q 031788 93 KEEDRLVVGCQSGA-RSL 109 (153)
Q Consensus 93 ~~~~~ivi~c~~g~-~a~ 109 (153)
+...+++++|..|. |+.
T Consensus 168 ~~~~pivVhc~~G~gRsg 185 (235)
T PF00102_consen 168 DPNGPIVVHCSDGVGRSG 185 (235)
T ss_dssp TTSSEEEEESSSSSHHHH
T ss_pred CCccceEeeccccccccc
Confidence 47789999999774 544
No 340
>PF10006 DUF2249: Uncharacterized conserved protein (DUF2249); InterPro: IPR018720 This domain is found in a number of hypothetical bacterial and archaeal proteins with no known function. It is also found in proteins described as cupin 2 and hemerythrin. It represents a conserved region that shows distant similarity to the SirA protein (see IPR001455 from INTERPRO).
Probab=27.81 E-value=1.3e+02 Score=17.54 Aligned_cols=47 Identities=15% Similarity=0.129 Sum_probs=28.4
Q ss_pred HHHHHHhhccCCCeEEEEeCCCccHHHHHHHHHHC-CccceeeccccHHHH
Q 031788 84 FLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGA-GFKHVSNFGGGHMAW 133 (153)
Q Consensus 84 ~~~~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~~~-G~~~v~~l~gG~~~w 133 (153)
..+.+.+ +.++..++++.+... ......|... |+-.......|-..|
T Consensus 16 il~~~~~-L~~Ge~l~lv~d~~P--~pL~~~l~~~~g~~~~~~~~~~~~~w 63 (69)
T PF10006_consen 16 ILEALDE-LPPGETLELVNDHDP--RPLYPQLEERRGFFSWEYEEQGPGEW 63 (69)
T ss_pred HHHHHHc-CCCCCEEEEEeCCCC--HHHHHHHHHhCCCceEEEEEcCCCEE
Confidence 3344444 478888888876533 3556667766 984455555554444
No 341
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=27.80 E-value=90 Score=24.40 Aligned_cols=33 Identities=27% Similarity=0.231 Sum_probs=25.9
Q ss_pred CCCeEEEEeC---CCccHHHHHHHHHHCCccceeec
Q 031788 94 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNF 126 (153)
Q Consensus 94 ~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~~l 126 (153)
+++.++++.+ +|.....+++.|++.|-.+++..
T Consensus 209 ~g~~vliVDDii~tG~Tl~~a~~~l~~~ga~~v~~~ 244 (308)
T TIGR01251 209 EGKDVVIVDDIIDTGGTIAKAAEILKSAGAKRVIAA 244 (308)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHHhcCCCEEEEE
Confidence 5677888866 66777888999999999887543
No 342
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=27.73 E-value=2.4e+02 Score=20.33 Aligned_cols=59 Identities=29% Similarity=0.258 Sum_probs=35.7
Q ss_pred HHHHHHHh-CCCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh--ccCCCeEEEEeCCCccHHH
Q 031788 34 RAAKNLLE-SGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL--CKEEDRLVVGCQSGARSLH 110 (153)
Q Consensus 34 ~~~~~~~~-~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivi~c~~g~~a~~ 110 (153)
+++.++++ .+..|+|.-+..+ + + . ++. ++...+... -.+.+.-|++|.+|.-...
T Consensus 16 ~~l~~~L~~~G~eV~D~G~~~~-e------~--~--dYp-----------d~a~~va~~V~~g~~d~GIliCGTGiG~si 73 (171)
T PRK08622 16 MAVSDYLKSKGHEVIDVGTYDF-T------R--T--HYP-----------IFGKKVGEAVASGEADLGVCICGTGVGISN 73 (171)
T ss_pred HHHHHHHHHCCCEEEEcCCCCC-C------C--C--ChH-----------HHHHHHHHHHHcCCCcEEEEEcCCcHHHHH
Confidence 34555665 4688999987432 1 2 2 221 455555544 2456789999999976666
Q ss_pred HHHH
Q 031788 111 ATAD 114 (153)
Q Consensus 111 ~~~~ 114 (153)
++..
T Consensus 74 aANK 77 (171)
T PRK08622 74 AVNK 77 (171)
T ss_pred HHhc
Confidence 6554
No 343
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=27.67 E-value=76 Score=22.83 Aligned_cols=31 Identities=10% Similarity=0.093 Sum_probs=24.6
Q ss_pred EEEeCCCccHHHHHHHHHHCCccceeecccc
Q 031788 99 VVGCQSGARSLHATADLLGAGFKHVSNFGGG 129 (153)
Q Consensus 99 vi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG 129 (153)
++.|.....-..+....+..||.++.++.+|
T Consensus 75 vv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~ 105 (187)
T COG3620 75 VVSVSPDDSISDVVNLMRDKGISQLPVIEED 105 (187)
T ss_pred eeEECchhhHHHHHHHHHHcCCccCceeeCC
Confidence 5566666667888999999999988877765
No 344
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.62 E-value=88 Score=26.03 Aligned_cols=29 Identities=21% Similarity=0.423 Sum_probs=22.3
Q ss_pred EEEEeCCCcc---HHHHHHHHHHCCccceeec
Q 031788 98 LVVGCQSGAR---SLHATADLLGAGFKHVSNF 126 (153)
Q Consensus 98 ivi~c~~g~~---a~~~~~~L~~~G~~~v~~l 126 (153)
|++.|+.|.. ...++++|...||..+-+|
T Consensus 269 V~Ilcgpgnnggdg~v~gRHL~~~G~~~vi~~ 300 (453)
T KOG2585|consen 269 VAILCGPGNNGGDGLVCGRHLAQHGYTPVIYY 300 (453)
T ss_pred EEEEeCCCCccchhHHHHHHHHHcCceeEEEe
Confidence 8888986654 4568999999999876544
No 345
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=27.60 E-value=1.5e+02 Score=22.77 Aligned_cols=44 Identities=14% Similarity=0.151 Sum_probs=30.0
Q ss_pred HHHHHHHhhccCCCeEEEEeCCCccHHHHHHHHHHCCccceeec
Q 031788 83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNF 126 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l 126 (153)
++...+.++...+..+|+.+..+..+..+.+.+++.|+...+++
T Consensus 205 d~~~~l~~l~~~~~~vvv~~~~~~~~~~~~~~a~~~g~~~~~~i 248 (348)
T cd06350 205 DIKRILKKLKSSTARVIVVFGDEDDALRLFCEAYKLGMTGKYWI 248 (348)
T ss_pred HHHHHHHHHHhCCCcEEEEEeCcHHHHHHHHHHHHhCCCCeEEE
Confidence 66666666634444667766667778888899999999444433
No 346
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=27.58 E-value=1.6e+02 Score=20.98 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=29.0
Q ss_pred HHHHHHHhhccCCCeEEEEeCCCccHHHHHHHHHHCCccceeec
Q 031788 83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNF 126 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l 126 (153)
++.+.+.+.+.++..++++...-.....+.+.|.+.|| ++.++
T Consensus 126 ~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~-~~~~~ 168 (198)
T PRK00377 126 EIISASWEIIKKGGRIVIDAILLETVNNALSALENIGF-NLEIT 168 (198)
T ss_pred HHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCC-CeEEE
Confidence 55555555577888887754444456788888999998 44433
No 347
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=27.49 E-value=1.4e+02 Score=20.41 Aligned_cols=47 Identities=15% Similarity=0.061 Sum_probs=21.6
Q ss_pred HHHHHHHhhccCCCeEEEEeCCCccHHHHHHHHHHCCc-cceeeccccH
Q 031788 83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGF-KHVSNFGGGH 130 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~~~G~-~~v~~l~gG~ 130 (153)
++.+++.+. +..+-|++|..+-....++.+.+++... +.|..|..|-
T Consensus 44 d~l~~~~~D-~~t~~I~ly~E~~~d~~~f~~~~~~a~~~KPVv~lk~Gr 91 (138)
T PF13607_consen 44 DLLEYLAED-PDTRVIVLYLEGIGDGRRFLEAARRAARRKPVVVLKAGR 91 (138)
T ss_dssp HHHHHHCT--SS--EEEEEES--S-HHHHHHHHHHHCCCS-EEEEE---
T ss_pred HHHHHHhcC-CCCCEEEEEccCCCCHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 566666553 3334466776655555666666555432 4577777764
No 348
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=27.36 E-value=2.2e+02 Score=19.81 Aligned_cols=58 Identities=21% Similarity=0.212 Sum_probs=35.0
Q ss_pred HHHHHHh-CCCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh--ccCCCeEEEEeCCCccHHHH
Q 031788 35 AAKNLLE-SGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL--CKEEDRLVVGCQSGARSLHA 111 (153)
Q Consensus 35 ~~~~~~~-~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivi~c~~g~~a~~~ 111 (153)
.+.++++ .++.++|.-+..+ .+ . ++. ++...+.+. -.+.+.-|++|.+|.-...+
T Consensus 15 ~l~~~L~~~g~eV~D~G~~~~-------~~--~--dYp-----------d~a~~va~~V~~g~~~~GIliCGtGiG~sia 72 (144)
T TIGR00689 15 EIIEHLKQKGHEVIDCGTLYD-------ER--V--DYP-----------DYAKLVADKVVAGEVSLGILICGTGIGMSIA 72 (144)
T ss_pred HHHHHHHHCCCEEEEcCCCCC-------CC--C--ChH-----------HHHHHHHHHHHcCCCceEEEEcCCcHHHHHH
Confidence 4555665 4688999976421 12 2 221 455555554 24667799999999765555
Q ss_pred HHH
Q 031788 112 TAD 114 (153)
Q Consensus 112 ~~~ 114 (153)
+..
T Consensus 73 ANK 75 (144)
T TIGR00689 73 ANK 75 (144)
T ss_pred Hhc
Confidence 554
No 349
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=27.35 E-value=1.8e+02 Score=24.32 Aligned_cols=46 Identities=13% Similarity=0.365 Sum_probs=34.7
Q ss_pred HHHHHHHhh---ccCCCeEEEEeC-CCccHHHHHHHHHH-CCccce--eeccc
Q 031788 83 DFLKKVRSL---CKEEDRLVVGCQ-SGARSLHATADLLG-AGFKHV--SNFGG 128 (153)
Q Consensus 83 ~~~~~~~~~---~~~~~~ivi~c~-~g~~a~~~~~~L~~-~G~~~v--~~l~g 128 (153)
++.+++.+. ++|+..+.+++. .|+.+...|..+.+ .|+..| .-++|
T Consensus 199 ~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~itGvIlTKlDG 251 (451)
T COG0541 199 ELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGITGVILTKLDG 251 (451)
T ss_pred HHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCCceEEEEcccC
Confidence 566666665 889999988888 88888888888875 687765 35555
No 350
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=27.34 E-value=1.1e+02 Score=22.65 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=24.4
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHCCccceeec
Q 031788 94 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNF 126 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l 126 (153)
+.++|+|...+|..+..++..|...|++ |..+
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~~-V~~~ 47 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGFA-VKAG 47 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCCE-EEEE
Confidence 4566777777888888888999888876 5543
No 351
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=27.25 E-value=1.1e+02 Score=22.71 Aligned_cols=42 Identities=21% Similarity=0.191 Sum_probs=30.6
Q ss_pred CCCeEEEEeC---CCccHHHHHHHHHHC-Cccceeec-----cccHHHHHh
Q 031788 94 EEDRLVVGCQ---SGARSLHATADLLGA-GFKHVSNF-----GGGHMAWVQ 135 (153)
Q Consensus 94 ~~~~ivi~c~---~g~~a~~~~~~L~~~-G~~~v~~l-----~gG~~~w~~ 135 (153)
+++.+++.++ +|.....+.+.|.+. |-.|++++ ..|..+..+
T Consensus 123 ~~~~viv~DPMLATG~s~i~ai~~L~~~G~~~~I~~v~~vAapeGi~~v~~ 173 (210)
T COG0035 123 DERTVIVLDPMLATGGSAIAAIDLLKKRGGPKNIKVVSLVAAPEGIKAVEK 173 (210)
T ss_pred cCCeEEEECchhhccHhHHHHHHHHHHhCCCceEEEEEEEecHHHHHHHHH
Confidence 5677888877 888889999999999 66665433 246666555
No 352
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=27.20 E-value=87 Score=24.90 Aligned_cols=34 Identities=15% Similarity=0.111 Sum_probs=26.6
Q ss_pred CCCeEEEEeC---CCccHHHHHHHHHHCCccceeecc
Q 031788 94 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNFG 127 (153)
Q Consensus 94 ~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~~l~ 127 (153)
+++.++++++ +|.....+++.|++.|-..++...
T Consensus 229 ~g~~viiVDDii~TG~T~~~a~~~L~~~Ga~~v~~~~ 265 (330)
T PRK02812 229 KGKTAILVDDMIDTGGTICEGARLLRKEGAKQVYACA 265 (330)
T ss_pred CCCEEEEEccccCcHHHHHHHHHHHhccCCCeEEEEE
Confidence 4677888866 667778899999999998876444
No 353
>PRK09273 hypothetical protein; Provisional
Probab=27.09 E-value=1.4e+02 Score=22.23 Aligned_cols=70 Identities=20% Similarity=0.247 Sum_probs=41.5
Q ss_pred CCcceeecHHHHHHHHhC-CCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhc--cCCCeEEEE
Q 031788 25 GAEVITVDVRAAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLC--KEEDRLVVG 101 (153)
Q Consensus 25 ~~~~~~i~~~~~~~~~~~-~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ivi~ 101 (153)
++....+-.+++.+.+++ +..++|+-...+ .. .+..+. ++.......+ ...+..|+.
T Consensus 11 qa~kn~~i~~~L~~~L~~~G~eV~D~G~~~~-------~~--~s~dYp-----------d~a~~vA~~V~~g~~d~GIli 70 (211)
T PRK09273 11 QAAKNAIIYEALKKVADPKGHEVFNYGMYDE-------ED--HQLTYV-----------QNGIMASILLNSKAVDFVVTG 70 (211)
T ss_pred hhhhhHHHHHHHHHHHHHCCCEEEEeCCCCC-------CC--CCCChH-----------HHHHHHHHHHHcCCCCEEEEE
Confidence 333445556777777764 689999987422 10 012231 4444444442 355779999
Q ss_pred eCCCccHHHHHHH
Q 031788 102 CQSGARSLHATAD 114 (153)
Q Consensus 102 c~~g~~a~~~~~~ 114 (153)
|++|.-...++..
T Consensus 71 CGTGiG~siAANK 83 (211)
T PRK09273 71 CGTGQGAMLALNS 83 (211)
T ss_pred cCcHHHHHHHHhc
Confidence 9998766666554
No 354
>PF12119 DUF3581: Protein of unknown function (DUF3581); InterPro: IPR021974 This family consists of uncharacterised bacterial proteins.
Probab=27.03 E-value=59 Score=24.23 Aligned_cols=21 Identities=10% Similarity=-0.009 Sum_probs=15.5
Q ss_pred HHHHHHHhh---ccCCCeEEEEeC
Q 031788 83 DFLKKVRSL---CKEEDRLVVGCQ 103 (153)
Q Consensus 83 ~~~~~~~~~---~~~~~~ivi~c~ 103 (153)
-+...+.+. +++++|+|+|-.
T Consensus 132 ilvPLMe~~~vMiNp~RPLViYES 155 (218)
T PF12119_consen 132 ILVPLMEEHQVMINPARPLVIYES 155 (218)
T ss_pred HhhhhHhhcCeeecCCCceEEeEe
Confidence 344555554 999999999965
No 355
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=26.99 E-value=1.7e+02 Score=24.42 Aligned_cols=46 Identities=11% Similarity=0.133 Sum_probs=30.9
Q ss_pred CCeEEEEeCCCcc----------HHHHHHHHHHCCccceeeccccHHHHHhCCCcee
Q 031788 95 EDRLVVGCQSGAR----------SLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVK 141 (153)
Q Consensus 95 ~~~ivi~c~~g~~----------a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~ 141 (153)
.+.++++..+... +...|++++..|. +|-.+...+-.|.++..++.
T Consensus 217 ~rtvvv~atsd~p~~~R~~a~~~A~tiAEyfrd~G~-~VLl~~DslTR~A~A~REIs 272 (444)
T PRK08972 217 ARSVVVAAPADTSPLMRLKGCETATTIAEYFRDQGL-NVLLLMDSLTRYAQAQREIA 272 (444)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCC-CEEEEEcChHHHHHHHHHHH
Confidence 4556666554421 3356888999996 48888888888887765554
No 356
>PF11181 YflT: Heat induced stress protein YflT
Probab=26.91 E-value=94 Score=19.92 Aligned_cols=7 Identities=14% Similarity=0.169 Sum_probs=3.0
Q ss_pred eEEEEeC
Q 031788 97 RLVVGCQ 103 (153)
Q Consensus 97 ~ivi~c~ 103 (153)
.|+++..
T Consensus 28 dI~Vva~ 34 (103)
T PF11181_consen 28 DIYVVAK 34 (103)
T ss_pred cEEEEEc
Confidence 3444443
No 357
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=26.87 E-value=1.1e+02 Score=22.31 Aligned_cols=31 Identities=29% Similarity=0.176 Sum_probs=25.8
Q ss_pred cCCCeEEEEeC---CCccHHHHHHHHHHCCccce
Q 031788 93 KEEDRLVVGCQ---SGARSLHATADLLGAGFKHV 123 (153)
Q Consensus 93 ~~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v 123 (153)
.++++++++++ +|.....+.+.|++.|-..+
T Consensus 138 ~~gk~VlIVDDVitTG~Tl~~ai~~l~~~Ga~~v 171 (200)
T PRK02277 138 VEGKRCVIVDDVITSGTTMKETIEYLKEHGGKPV 171 (200)
T ss_pred CCcCEEEEEeeccCchHHHHHHHHHHHHcCCEEE
Confidence 37899999987 77778889999999997754
No 358
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=26.84 E-value=1.5e+02 Score=21.43 Aligned_cols=46 Identities=17% Similarity=0.156 Sum_probs=34.8
Q ss_pred HHHHHHHhhccCCCeEEEEeCCCccHHHHHHHHHHCCccceeecccc
Q 031788 83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGG 129 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG 129 (153)
++.-.++.. +++..+|=+--...+...+.......|.+|+.++.+.
T Consensus 30 ~~l~~~A~~-~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~d 75 (195)
T PF02390_consen 30 EFLIELAKR-NPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGD 75 (195)
T ss_dssp HHHHHHHHH-STTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-
T ss_pred HHHHHHHHH-CCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEcc
Confidence 666666665 6788777776677777888888888899999998875
No 359
>cd04468 S1_eIF5A S1_eIF5A: Eukaryotic translation Initiation Factor 5A (eIF5A), S1-like RNA-binding domain. eIF5A is an evolutionarily conserved protein found in eukaryotes. eIF5A is the only protein known to have the unusual amino acid hypusine. Hypusine is essential for eIF5A function and is a post-translationally modified lysine. eIF5A interacts with components of the 80S ribosome and translation elongation factors 2 (eEF2) in a hypusine-dependent manner. This C-terminal S1 domain resembles the oligonucleotides-binding fold (OB fold) which binds RNA. Moreover, eIF5A prefers binding to the actively translating ribosome. This evidence suggests that eIF5A plays a role in translation elongation instead of translation initiation as previously proposed.
Probab=26.81 E-value=1.4e+02 Score=17.97 Aligned_cols=43 Identities=21% Similarity=0.476 Sum_probs=26.5
Q ss_pred CCeEEecCChhhh-----hcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEE
Q 031788 43 GYGYLDVRTAEEF-----KEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVV 100 (153)
Q Consensus 43 ~~~iIDvR~~~e~-----~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi 100 (153)
++.+||+.. .| ..|....- +.+|- .++.+++.+..+.++.+++
T Consensus 5 eYqLidI~d--GflsLm~e~G~~k~D--lklP~-----------~elg~~I~~~f~~gk~~~v 52 (69)
T cd04468 5 EYQLIDIDD--GFLSLMDDDGETRED--LKLPE-----------GELGKEIREKFDEGKDVLV 52 (69)
T ss_pred eEEEEeecC--CeEEEEcCCCCcccC--CcCCc-----------HHHHHHHHHHHhCCCcEEE
Confidence 477888855 44 24666644 55554 3787888777555666443
No 360
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=26.72 E-value=1.3e+02 Score=22.06 Aligned_cols=45 Identities=20% Similarity=0.136 Sum_probs=27.1
Q ss_pred HHHHHHHhh-c-cCCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHHH
Q 031788 83 DFLKKVRSL-C-KEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMA 132 (153)
Q Consensus 83 ~~~~~~~~~-~-~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~ 132 (153)
.+.+.+..+ . +..+-+++-|+.|.. +..|.+.|++ |..++-.-.+
T Consensus 22 ~l~~~~~~l~~~~~~rvLd~GCG~G~d----a~~LA~~G~~-V~gvD~S~~A 68 (213)
T TIGR03840 22 LLVKHWPALGLPAGARVFVPLCGKSLD----LAWLAEQGHR-VLGVELSEIA 68 (213)
T ss_pred HHHHHHHhhCCCCCCeEEEeCCCchhH----HHHHHhCCCe-EEEEeCCHHH
Confidence 455555443 2 334556667777644 5556678997 8877765443
No 361
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=26.72 E-value=1.4e+02 Score=22.03 Aligned_cols=38 Identities=16% Similarity=0.078 Sum_probs=27.4
Q ss_pred HHHHHHHhhccCCCeEEEEeCCCccHHHHHHHHHHCCcc
Q 031788 83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFK 121 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~ 121 (153)
.+.+.+.....++++|++.|+.+.+ ....+.|.+.|+.
T Consensus 106 ~L~~~~~~~~~~~~~vL~~rg~~~r-~~l~~~L~~~G~~ 143 (240)
T PRK09189 106 RLAETVAAALAPTARLLYLAGRPRA-PVFEDRLAAAGIP 143 (240)
T ss_pred HHHHHHHHhcCCCCcEEEeccCccc-chhHHHHHhCCCe
Confidence 5555554433577889999876666 6788899999975
No 362
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=26.71 E-value=1.3e+02 Score=21.40 Aligned_cols=33 Identities=24% Similarity=0.170 Sum_probs=22.5
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHCCccceeecc
Q 031788 94 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFG 127 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~ 127 (153)
++++++++..+|..+..++..|...|+ +|.++.
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~ 59 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVG 59 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEc
Confidence 456677776667777777788887775 466553
No 363
>PLN02335 anthranilate synthase
Probab=26.65 E-value=1.4e+02 Score=22.12 Aligned_cols=32 Identities=6% Similarity=0.046 Sum_probs=24.9
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHCCccceeec
Q 031788 94 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNF 126 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l 126 (153)
..++|++++..+.-....+++|++.|++ +.++
T Consensus 17 ~~~~ilviD~~dsft~~i~~~L~~~g~~-~~v~ 48 (222)
T PLN02335 17 QNGPIIVIDNYDSFTYNLCQYMGELGCH-FEVY 48 (222)
T ss_pred ccCcEEEEECCCCHHHHHHHHHHHCCCc-EEEE
Confidence 4567888888777888999999999976 4433
No 364
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=26.60 E-value=1.3e+02 Score=20.16 Aligned_cols=45 Identities=22% Similarity=0.220 Sum_probs=31.3
Q ss_pred EEEeCCCccHHHHHHHHHHCCccceeecccc--HHHHHhCCCceecCC
Q 031788 99 VVGCQSGARSLHATADLLGAGFKHVSNFGGG--HMAWVQNGLKVKARE 144 (153)
Q Consensus 99 vi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG--~~~w~~~g~~~~~~~ 144 (153)
|.++..|..+...+.+|.+.|++ |..+.-+ .+.+.+.|..+....
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~-V~l~~r~~~~~~~~~~g~~~~~~~ 47 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHD-VTLVSRSPRLEAIKEQGLTITGPD 47 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCE-EEEEESHHHHHHHHHHCEEEEETT
T ss_pred CEEECcCHHHHHHHHHHHHCCCc-eEEEEccccHHhhhheeEEEEecc
Confidence 34556777888889999888877 6655544 366777777665544
No 365
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=26.49 E-value=1.8e+02 Score=19.77 Aligned_cols=12 Identities=25% Similarity=0.437 Sum_probs=6.8
Q ss_pred HHHHHHCCccce
Q 031788 112 TADLLGAGFKHV 123 (153)
Q Consensus 112 ~~~L~~~G~~~v 123 (153)
...|+++|++.+
T Consensus 101 ~~~L~~~Gv~~v 112 (128)
T cd02072 101 EKRFKEMGFDRV 112 (128)
T ss_pred HHHHHHcCCCEE
Confidence 345666666544
No 366
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=26.46 E-value=1.1e+02 Score=21.91 Aligned_cols=25 Identities=12% Similarity=-0.004 Sum_probs=11.5
Q ss_pred CeEEEEeCCCccHHHHHHHHHHCCc
Q 031788 96 DRLVVGCQSGARSLHATADLLGAGF 120 (153)
Q Consensus 96 ~~ivi~c~~g~~a~~~~~~L~~~G~ 120 (153)
+++++...++..+..+++.|.+.|+
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~ 30 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGA 30 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCC
Confidence 3444444444444444444544454
No 367
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=26.30 E-value=1.1e+02 Score=16.94 Aligned_cols=24 Identities=21% Similarity=0.070 Sum_probs=18.2
Q ss_pred EEEEeC-CCccHHHHHHHHHHCCcc
Q 031788 98 LVVGCQ-SGARSLHATADLLGAGFK 121 (153)
Q Consensus 98 ivi~c~-~g~~a~~~~~~L~~~G~~ 121 (153)
|++|.. ++.....+-+.|.+.|++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~ 25 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIP 25 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCe
Confidence 456655 667788888889998876
No 368
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=26.16 E-value=2.1e+02 Score=21.62 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=10.3
Q ss_pred cHHHHHHHHHHCCcc
Q 031788 107 RSLHATADLLGAGFK 121 (153)
Q Consensus 107 ~a~~~~~~L~~~G~~ 121 (153)
+-+...++|..+||+
T Consensus 52 Sk~~l~~rL~rlgf~ 66 (262)
T KOG3040|consen 52 SKRNLHERLQRLGFD 66 (262)
T ss_pred hHHHHHHHHHHhCCC
Confidence 345667788888875
No 369
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=26.06 E-value=1.6e+02 Score=17.88 Aligned_cols=32 Identities=22% Similarity=0.058 Sum_probs=23.7
Q ss_pred CCeEEEEeCCCccHHHHHHHHHHCCccceeecc
Q 031788 95 EDRLVVGCQSGARSLHATADLLGAGFKHVSNFG 127 (153)
Q Consensus 95 ~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~ 127 (153)
+++ +++++.|..+..++..|.+.|...+++++
T Consensus 23 ~~~-v~i~G~G~~g~~~a~~l~~~~~~~v~v~~ 54 (86)
T cd05191 23 GKT-VVVLGAGEVGKGIAKLLADEGGKKVVLCD 54 (86)
T ss_pred CCE-EEEECCCHHHHHHHHHHHHcCCCEEEEEc
Confidence 444 44456688888999999998777777664
No 370
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=26.06 E-value=1.2e+02 Score=25.12 Aligned_cols=52 Identities=19% Similarity=0.156 Sum_probs=30.8
Q ss_pred HHHHHHHhhccCCCeEEEEeCCCccHHHHHHHHHH-C----CccceeeccccHHHHH
Q 031788 83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLG-A----GFKHVSNFGGGHMAWV 134 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~~-~----G~~~v~~l~gG~~~w~ 134 (153)
++.+.+.+..+.+...+++|++|..+-.++-+|.. . |-..+-.+.++|=+|.
T Consensus 121 ~lAe~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t 177 (442)
T TIGR03372 121 LLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKS 177 (442)
T ss_pred HHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCC
Confidence 45555555433333567888999887665555543 2 5455666777665543
No 371
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.05 E-value=1.3e+02 Score=23.60 Aligned_cols=33 Identities=21% Similarity=-0.037 Sum_probs=28.3
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHCCccceeecc
Q 031788 94 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFG 127 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~ 127 (153)
.++.++++.+++......+..|.+.|++ |.+++
T Consensus 157 ~Gk~V~viGrs~~mG~PmA~~L~~~g~t-Vtv~~ 189 (296)
T PRK14188 157 SGLNAVVIGRSNLVGKPMAQLLLAANAT-VTIAH 189 (296)
T ss_pred CCCEEEEEcCCcchHHHHHHHHHhCCCE-EEEEC
Confidence 6888999988999999999999999987 66663
No 372
>PF06922 CTV_P13: Citrus tristeza virus P13 protein; InterPro: IPR009692 This entry represents the 13 kDa P13 protein from Citrus tristeza virus (CTV) strains. CTV, a member of the closterovirus group, is one of the more complex single-stranded RNA viruses []. The function of the P13 protein is unknown.
Probab=26.03 E-value=24 Score=22.51 Aligned_cols=43 Identities=14% Similarity=0.411 Sum_probs=28.4
Q ss_pred CCcchhHHHHHHHHHHHHHHhhhcCCcceeecHHHHHHHHhCCCeEEecC
Q 031788 1 MGVSRNWVTFLRGLFLLLLICRSSGAEVITVDVRAAKNLLESGYGYLDVR 50 (153)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~iIDvR 50 (153)
|++.|.|+..++....++.. ..++|+ +-..++++++..+||+.
T Consensus 1 m~irr~~lkv~avitvlwyg------kepsis-egynalmnddfkfidth 43 (119)
T PF06922_consen 1 MSIRRVWLKVMAVITVLWYG------KEPSIS-EGYNALMNDDFKFIDTH 43 (119)
T ss_pred CchHHHHHHHhhheeeeeec------CCCchh-HHHHHHhcccchhhhhh
Confidence 88999999988876555543 233444 33456667777778874
No 373
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=26.00 E-value=97 Score=24.31 Aligned_cols=32 Identities=19% Similarity=0.117 Sum_probs=25.7
Q ss_pred CCCeEEEEeC---CCccHHHHHHHHHHCCccceee
Q 031788 94 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSN 125 (153)
Q Consensus 94 ~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~~ 125 (153)
++++++++++ +|.....+++.|++.|-..++.
T Consensus 207 ~g~~vliVDDii~TG~T~~~a~~~l~~~Ga~~v~~ 241 (309)
T PRK01259 207 EGRDCILVDDMIDTAGTLCKAAEALKERGAKSVYA 241 (309)
T ss_pred CCCEEEEEecccCcHHHHHHHHHHHHccCCCEEEE
Confidence 5678888876 6777788899999999887753
No 374
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=25.88 E-value=1.8e+02 Score=24.06 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=30.1
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHH
Q 031788 94 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 131 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~ 131 (153)
++++++++ +-|..+.-++.+|...|+.++++..=.+.
T Consensus 177 ~~~~vlvI-GAGem~~lva~~L~~~g~~~i~IaNRT~e 213 (414)
T COG0373 177 KDKKVLVI-GAGEMGELVAKHLAEKGVKKITIANRTLE 213 (414)
T ss_pred ccCeEEEE-cccHHHHHHHHHHHhCCCCEEEEEcCCHH
Confidence 67777777 56677889999999999999988876654
No 375
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=25.82 E-value=1e+02 Score=22.45 Aligned_cols=17 Identities=29% Similarity=0.554 Sum_probs=12.7
Q ss_pred CCCeEEEEeCCC-ccHHH
Q 031788 94 EEDRLVVGCQSG-ARSLH 110 (153)
Q Consensus 94 ~~~~ivi~c~~g-~~a~~ 110 (153)
.+.+|+++|..| +|+..
T Consensus 165 ~~~pivVHC~~G~gRsg~ 182 (231)
T cd00047 165 GSGPIVVHCSAGVGRTGT 182 (231)
T ss_pred CCCCeEEECCCCCCccch
Confidence 478999999966 46543
No 376
>PRK08349 hypothetical protein; Validated
Probab=25.81 E-value=1.2e+02 Score=21.86 Aligned_cols=22 Identities=32% Similarity=0.167 Sum_probs=11.2
Q ss_pred EEEeCCCccHHHHHHHHHHCCc
Q 031788 99 VVGCQSGARSLHATADLLGAGF 120 (153)
Q Consensus 99 vi~c~~g~~a~~~~~~L~~~G~ 120 (153)
++...+|.-|..+++.+.+.|+
T Consensus 4 vvllSGG~DS~v~~~~l~~~g~ 25 (198)
T PRK08349 4 VALLSSGIDSPVAIYLMLRRGV 25 (198)
T ss_pred EEEccCChhHHHHHHHHHHcCC
Confidence 3444444555555555555555
No 377
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=25.75 E-value=1.7e+02 Score=24.74 Aligned_cols=34 Identities=21% Similarity=0.194 Sum_probs=27.0
Q ss_pred HHHHHHHHHHCCccceeeccccHHHHHhCCCcee
Q 031788 108 SLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVK 141 (153)
Q Consensus 108 a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~ 141 (153)
+...|++++..|..+|-.+-..+-.|.++..++.
T Consensus 249 A~tiAEyfrd~g~~~VLll~DslTR~A~A~REIs 282 (494)
T CHL00060 249 ALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVS 282 (494)
T ss_pred HHHHHHHHHHcCCCCEEEEcccchHHHHHHHHHH
Confidence 4457888999888789999999988888766554
No 378
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=25.65 E-value=1.1e+02 Score=22.11 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=20.9
Q ss_pred ccCCCeEEEEeCCCc--cHHHHHHHHHHCCccce
Q 031788 92 CKEEDRLVVGCQSGA--RSLHATADLLGAGFKHV 123 (153)
Q Consensus 92 ~~~~~~ivi~c~~g~--~a~~~~~~L~~~G~~~v 123 (153)
++..++|+++|+... .+...++.|.+.|.+=|
T Consensus 79 lt~~DRVllfs~~~~~~e~~~~a~~L~~~gi~~v 112 (172)
T PF10740_consen 79 LTETDRVLLFSPFSTDEEAVALAKQLIEQGIPFV 112 (172)
T ss_dssp --TT-EEEEEES-S--HHHHHHHHHHHHHT--EE
T ss_pred ccccceEEEEeCCCCCHHHHHHHHHHHHCCCCEE
Confidence 467899999999443 56788999999998743
No 379
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=25.59 E-value=1.1e+02 Score=24.53 Aligned_cols=81 Identities=16% Similarity=0.231 Sum_probs=48.7
Q ss_pred CeEEecCChhhhhcCCCC-----CcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEE----------eCCCccH
Q 031788 44 YGYLDVRTAEEFKEGHVD-----AAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVG----------CQSGARS 108 (153)
Q Consensus 44 ~~iIDvR~~~e~~~ghi~-----ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~----------c~~g~~a 108 (153)
.++-..|...+ +.|+=| |..+.++++.+.+......+..|+.++. |..||++- ..-...+
T Consensus 156 ~viAEmrG~~D-e~G~SPFWd~lg~hFF~mdF~eAD~Lsg~~~k~FIaeLM----P~~PIYv~LLp~eAq~vIG~vH~~t 230 (336)
T TIGR03244 156 KIIAEMRGVSD-EQGRSPFWNALGRHFFSMDFSQADYLSGIGQKAFIAELM----PKFPIYVDLLSAEAQDVIGRVHEDT 230 (336)
T ss_pred hhhhhhcCccC-CCCCCchHHHhhccccCCCHHHHHHHhccCcchhHHHHC----CCCCcccccCCHHHHHHhCCcCCCC
Confidence 45666666655 444444 4445666665444434444557777765 44555542 2233456
Q ss_pred HHHHHHHHHCCccc---eeecccc
Q 031788 109 LHATADLLGAGFKH---VSNFGGG 129 (153)
Q Consensus 109 ~~~~~~L~~~G~~~---v~~l~gG 129 (153)
..+.+.|.+-||.. |-+++||
T Consensus 231 ~pA~~lLe~EGF~~~~yVDIFDgG 254 (336)
T TIGR03244 231 RPALAMLESEGFRYQGYVDIFDAG 254 (336)
T ss_pred HHHHHHHHHcCCccCCceeccCCC
Confidence 78888999999963 5678887
No 380
>PRK07326 short chain dehydrogenase; Provisional
Probab=25.48 E-value=1.3e+02 Score=21.51 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=12.4
Q ss_pred CeEEEEeCCCccHHHHHHHHHHCCcc
Q 031788 96 DRLVVGCQSGARSLHATADLLGAGFK 121 (153)
Q Consensus 96 ~~ivi~c~~g~~a~~~~~~L~~~G~~ 121 (153)
+.+++...+|.-+..++++|.+.|++
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~ 32 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYK 32 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCE
Confidence 33444444444455555555555543
No 381
>PRK12939 short chain dehydrogenase; Provisional
Probab=25.48 E-value=1.9e+02 Score=20.80 Aligned_cols=27 Identities=19% Similarity=0.110 Sum_probs=15.2
Q ss_pred CCeEEEEeCCCccHHHHHHHHHHCCcc
Q 031788 95 EDRLVVGCQSGARSLHATADLLGAGFK 121 (153)
Q Consensus 95 ~~~ivi~c~~g~~a~~~~~~L~~~G~~ 121 (153)
++.+++...++.-+...+..|.+.|++
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~~ 33 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGAT 33 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCCE
Confidence 345555555555555666666666654
No 382
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=25.41 E-value=2e+02 Score=21.91 Aligned_cols=48 Identities=15% Similarity=0.273 Sum_probs=31.6
Q ss_pred HHHHHHHh-h-cc-CCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHH
Q 031788 83 DFLKKVRS-L-CK-EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 131 (153)
Q Consensus 83 ~~~~~~~~-~-~~-~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~ 131 (153)
-|...+.+ . .+ .++++++. +.|..+..++..|...|+.+|+++.=...
T Consensus 108 G~~~~l~~~~~~~~~~k~vlVl-GaGg~a~ai~~aL~~~g~~~V~v~~R~~~ 158 (278)
T PRK00258 108 GFVRALEERLGVDLKGKRILIL-GAGGAARAVILPLLDLGVAEITIVNRTVE 158 (278)
T ss_pred HHHHHHHhccCCCCCCCEEEEE-cCcHHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence 45555543 2 12 34555555 56888889999999999888887755443
No 383
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=25.39 E-value=1e+02 Score=25.91 Aligned_cols=35 Identities=26% Similarity=0.148 Sum_probs=28.4
Q ss_pred CCCeEEEEeC---CCccHHHHHHHHHHCCccceeeccc
Q 031788 94 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNFGG 128 (153)
Q Consensus 94 ~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~~l~g 128 (153)
++++|+++++ +|.....+++.|++.|-..|.+...
T Consensus 349 ~gk~vllVDDvittG~T~~~~~~~L~~~Ga~~v~~~~~ 386 (484)
T PRK07272 349 KGKRVVMVDDSIVRGTTSRRIVQLLKEAGAKEVHVAIA 386 (484)
T ss_pred CCCEEEEEccccCchHHHHHHHHHHHhcCCcEEEEEEe
Confidence 5788999988 6666788899999999988776544
No 384
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=25.38 E-value=2.2e+02 Score=23.89 Aligned_cols=33 Identities=21% Similarity=0.212 Sum_probs=25.2
Q ss_pred HHHHHHHHHH-CCccceeeccccHHHHHhCCCcee
Q 031788 108 SLHATADLLG-AGFKHVSNFGGGHMAWVQNGLKVK 141 (153)
Q Consensus 108 a~~~~~~L~~-~G~~~v~~l~gG~~~w~~~g~~~~ 141 (153)
+-..|++++. .|. ||-++-..+-.|.++..++.
T Consensus 225 a~tiAEyfrd~~G~-~VLll~DslTR~A~A~REis 258 (463)
T PRK09280 225 GLTMAEYFRDVEGQ-DVLLFIDNIFRFTQAGSEVS 258 (463)
T ss_pred HHHHHHHHHHhcCC-ceEEEecchHHHHHHHHHHH
Confidence 3456788888 996 48888889999988766554
No 385
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=25.07 E-value=1.1e+02 Score=25.96 Aligned_cols=35 Identities=26% Similarity=0.095 Sum_probs=28.1
Q ss_pred CCCeEEEEeC---CCccHHHHHHHHHHCCccceeeccc
Q 031788 94 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNFGG 128 (153)
Q Consensus 94 ~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~~l~g 128 (153)
++++|+++++ +|.....+++.|++.|-..|++...
T Consensus 366 ~gk~vllVDD~ittG~T~~~~~~~L~~~ga~~v~~ri~ 403 (510)
T PRK07847 366 RGKRLVVVDDSIVRGNTQRALVRMLREAGAAEVHVRIS 403 (510)
T ss_pred CCCEEEEEecccCchHHHHHHHHHHHHcCCCEEEEEEC
Confidence 6788999988 5666778899999999888776543
No 386
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=25.07 E-value=74 Score=25.53 Aligned_cols=41 Identities=17% Similarity=0.116 Sum_probs=32.0
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHHHHHh
Q 031788 94 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQ 135 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~ 135 (153)
++++|+++ +.|..+..++..|...|+.++.++++....+.+
T Consensus 134 ~~~~Vlvv-G~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sN 174 (376)
T PRK08762 134 LEARVLLI-GAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSN 174 (376)
T ss_pred hcCcEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeCCEecchh
Confidence 45666666 677788899999999999999999988544433
No 387
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=25.06 E-value=2.1e+02 Score=21.53 Aligned_cols=50 Identities=20% Similarity=0.114 Sum_probs=34.3
Q ss_pred ccCCCeEEEEeC---CCccHHHHHHHHHHCCccce--e-eccccHHHHHh----CCCcee
Q 031788 92 CKEEDRLVVGCQ---SGARSLHATADLLGAGFKHV--S-NFGGGHMAWVQ----NGLKVK 141 (153)
Q Consensus 92 ~~~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v--~-~l~gG~~~w~~----~g~~~~ 141 (153)
+.++++++++++ +|.....+.+.+++.|.+-+ . .+.-+..+|.. .+.|+.
T Consensus 173 l~~G~rVLIVDDvi~TG~Tl~~~~~ll~~~ga~vvgv~vlv~~~~~~~~~l~~~~~vpv~ 232 (238)
T PRK08558 173 LKKGDRVLIVDDIIRSGETQRALLDLARQAGADVVGVFFLIAVGEVGIDRAREETDAPVD 232 (238)
T ss_pred cCCcCEEEEEecccccCHHHHHHHHHHHHcCCEEEEEEEEEecCchHHHHHhHhcCCCEE
Confidence 468999999988 77777788889999997633 2 34434445553 366664
No 388
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=25.04 E-value=1.2e+02 Score=22.55 Aligned_cols=34 Identities=29% Similarity=0.422 Sum_probs=25.0
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHCCcc--ceeeccc
Q 031788 94 EEDRLVVGCQSGARSLHATADLLGAGFK--HVSNFGG 128 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~--~v~~l~g 128 (153)
++++++++ +.|..+.-++..|...|.. ++++++-
T Consensus 24 ~~~rvlvl-GAGgAg~aiA~~L~~~G~~~~~i~ivdr 59 (226)
T cd05311 24 EEVKIVIN-GAGAAGIAIARLLLAAGAKPENIVVVDS 59 (226)
T ss_pred cCCEEEEE-CchHHHHHHHHHHHHcCcCcceEEEEeC
Confidence 45566666 5677777888889999998 8876654
No 389
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=25.02 E-value=2.4e+02 Score=21.82 Aligned_cols=45 Identities=22% Similarity=0.335 Sum_probs=32.5
Q ss_pred HHHHHHHhhccCCCeEEEEeC-CCcc------HHHHHHHHHHCCccceeecc
Q 031788 83 DFLKKVRSLCKEEDRLVVGCQ-SGAR------SLHATADLLGAGFKHVSNFG 127 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~ivi~c~-~g~~------a~~~~~~L~~~G~~~v~~l~ 127 (153)
+|-+++.+.+.++..++=|-+ .|.+ -..++++|++.||.+|..+.
T Consensus 226 efY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~ 277 (287)
T COG2521 226 EFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVR 277 (287)
T ss_pred HHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeeh
Confidence 566666666778888777765 4432 35789999999999876553
No 390
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=25.01 E-value=2.5e+02 Score=19.70 Aligned_cols=58 Identities=24% Similarity=0.307 Sum_probs=33.9
Q ss_pred HHHHHHhC---CCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh--ccCCCeEEEEeCCCccHH
Q 031788 35 AAKNLLES---GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL--CKEEDRLVVGCQSGARSL 109 (153)
Q Consensus 35 ~~~~~~~~---~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivi~c~~g~~a~ 109 (153)
.+.+++++ ++.++|.-+..+ + + ..+| ++...+.+. -.+.+.-|++|.+|.-..
T Consensus 19 ~l~~~L~~~~~g~eV~D~G~~~~-~------~--~dYp-------------~~a~~va~~V~~~~~~~GIliCGtGiG~s 76 (151)
T PTZ00215 19 EIIDYIKNKGKEYKIEDMGTYTA-E------S--VDYP-------------DFAEKVCEEVLKGEADTGILVCGSGIGIS 76 (151)
T ss_pred HHHHHHHhccCCCEEEEcCCCCC-C------C--CCHH-------------HHHHHHHHHHhcCCCcEEEEEcCCcHHHH
Confidence 45556655 588999876431 1 2 2222 444444444 245677999999997655
Q ss_pred HHHHH
Q 031788 110 HATAD 114 (153)
Q Consensus 110 ~~~~~ 114 (153)
.++..
T Consensus 77 iaANK 81 (151)
T PTZ00215 77 IAANK 81 (151)
T ss_pred HHHhc
Confidence 55554
No 391
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=24.93 E-value=1.1e+02 Score=20.81 Aligned_cols=30 Identities=17% Similarity=0.061 Sum_probs=21.0
Q ss_pred EEEeCCCccHHHHHHHHHHCCccceeecccc
Q 031788 99 VVGCQSGARSLHATADLLGAGFKHVSNFGGG 129 (153)
Q Consensus 99 vi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG 129 (153)
+++++.|.-+...++.+..+||. |.+++.-
T Consensus 1 L~I~GaG~va~al~~la~~lg~~-v~v~d~r 30 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFR-VTVVDPR 30 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEE-EEEEES-
T ss_pred CEEEeCcHHHHHHHHHHHhCCCE-EEEEcCC
Confidence 35667788888888888899987 6555543
No 392
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=24.82 E-value=1.4e+02 Score=17.96 Aligned_cols=17 Identities=41% Similarity=0.561 Sum_probs=7.4
Q ss_pred HHHHHCCccceeecccc
Q 031788 113 ADLLGAGFKHVSNFGGG 129 (153)
Q Consensus 113 ~~L~~~G~~~v~~l~gG 129 (153)
..|.+.||.+++...||
T Consensus 13 ~~l~~~g~~~~v~~~g~ 29 (81)
T PF13662_consen 13 IALEQAGYKNVVAVLGG 29 (81)
T ss_dssp HHHHHTT-TTEEEESSS
T ss_pred HHHHHhCCCeEEEECCC
Confidence 33444455555544443
No 393
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=24.74 E-value=1.2e+02 Score=27.08 Aligned_cols=40 Identities=15% Similarity=0.304 Sum_probs=30.9
Q ss_pred HHHHHHHhhccCCCeEEEEeCCCc-cHHHHHHHHHHCCccc
Q 031788 83 DFLKKVRSLCKEEDRLVVGCQSGA-RSLHATADLLGAGFKH 122 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~ivi~c~~g~-~a~~~~~~L~~~G~~~ 122 (153)
.+..++.+.+..+..||++...|. ..-+++++|.+.||.+
T Consensus 359 ~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~ 399 (1042)
T KOG0924|consen 359 ACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYAD 399 (1042)
T ss_pred HHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhccccc
Confidence 455566666778888899888664 5678999999999975
No 394
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.69 E-value=2.1e+02 Score=20.41 Aligned_cols=27 Identities=15% Similarity=0.011 Sum_probs=18.7
Q ss_pred CCeEEEEeCCCccHHHHHHHHHHCCcc
Q 031788 95 EDRLVVGCQSGARSLHATADLLGAGFK 121 (153)
Q Consensus 95 ~~~ivi~c~~g~~a~~~~~~L~~~G~~ 121 (153)
.++++|...+|.-+..++..|.+.|++
T Consensus 6 ~~~vlItGasg~iG~~l~~~l~~~g~~ 32 (249)
T PRK12825 6 GRVALVTGAARGLGRAIALRLARAGAD 32 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCe
Confidence 456677766777777777777777775
No 395
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=24.64 E-value=1.9e+02 Score=21.51 Aligned_cols=30 Identities=17% Similarity=0.134 Sum_probs=25.3
Q ss_pred cCCCeEEEEeCCCccHHHHHHHHHHCCccc
Q 031788 93 KEEDRLVVGCQSGARSLHATADLLGAGFKH 122 (153)
Q Consensus 93 ~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~ 122 (153)
....++++.++....-+..|..|.+.|+.+
T Consensus 138 ~~~~~~vil~~~~~~P~~IA~~L~~~G~~~ 167 (210)
T COG2241 138 ENGRRLVILTPDDFGPAEIAKLLTENGIGD 167 (210)
T ss_pred hCCceEEEeCCCCCCHHHHHHHHHhCCCCC
Confidence 478889999888777789999999999854
No 396
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=24.62 E-value=1.3e+02 Score=21.49 Aligned_cols=27 Identities=15% Similarity=0.037 Sum_probs=16.8
Q ss_pred CCeEEEEeCCCccHHHHHHHHHHCCcc
Q 031788 95 EDRLVVGCQSGARSLHATADLLGAGFK 121 (153)
Q Consensus 95 ~~~ivi~c~~g~~a~~~~~~L~~~G~~ 121 (153)
++.++|...+|.-+..+++.|.+.|++
T Consensus 5 ~~~vlItG~sg~iG~~l~~~l~~~G~~ 31 (248)
T PRK05557 5 GKVALVTGASRGIGRAIAERLAAQGAN 31 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCE
Confidence 345555555666666667777666765
No 397
>PF01872 RibD_C: RibD C-terminal domain; InterPro: IPR002734 This domain is found in the C terminus of the bifunctional deaminase-reductase of Escherichia coli, Bacillus subtilis and other bacteria in combination with IPR002125 from INTERPRO that catalyses the second and third steps in the biosynthesis of riboflavin, i.e., the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (deaminase) and the subsequent reduction of the ribosyl side chain (reductase) []. The domain is also present in some HTP reductases from archaea and fungi.; GO: 0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity, 0009231 riboflavin biosynthetic process, 0055114 oxidation-reduction process; PDB: 3KY8_B 3KGY_B 2GD9_B 3JTW_B 2XW7_B 2D5N_B 2B3Z_A 3EX8_B 2AZN_A 2P4G_A ....
Probab=24.62 E-value=2.2e+02 Score=20.22 Aligned_cols=43 Identities=26% Similarity=0.261 Sum_probs=28.4
Q ss_pred CeEEEEeCCCc------------cHHHHHHHHHHCCccceeeccccH--HHHHhCCC
Q 031788 96 DRLVVGCQSGA------------RSLHATADLLGAGFKHVSNFGGGH--MAWVQNGL 138 (153)
Q Consensus 96 ~~ivi~c~~g~------------~a~~~~~~L~~~G~~~v~~l~gG~--~~w~~~g~ 138 (153)
.+++++|.... ....+.+.|++.|..++.+.-||- ....++|+
T Consensus 99 ~~~~v~~s~~~~~~~~~~l~v~~dl~~~l~~L~~~g~~~i~v~GG~~l~~~~l~~gL 155 (200)
T PF01872_consen 99 KPVLVITSEKAPDEYLERLRVRVDLEEALRRLKERGGKDILVEGGGSLNGSFLRAGL 155 (200)
T ss_dssp SSEEEEEESTSSHHHHHHHHESEHHHHHHHHHHHTTTSEEEEEEHHHHHHHHHHTT-
T ss_pred CceEEEeecccccccccceEEecCHHHHHHHHHhcCCCEEEEechHHHHHHHHhCCC
Confidence 56666665432 366788999999999888876653 34455553
No 398
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=24.61 E-value=1.4e+02 Score=21.03 Aligned_cols=51 Identities=24% Similarity=0.248 Sum_probs=34.7
Q ss_pred ccCCCeEEEEeC---CCccHHHHHHHHHHCCccce---eecc----ccHHHHHhC-CCceec
Q 031788 92 CKEEDRLVVGCQ---SGARSLHATADLLGAGFKHV---SNFG----GGHMAWVQN-GLKVKA 142 (153)
Q Consensus 92 ~~~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v---~~l~----gG~~~w~~~-g~~~~~ 142 (153)
+.++++++++++ +|.....+.+.|++.|..-+ .+++ ||...+.+. |.|+..
T Consensus 105 ~~~g~~VlIVDDvi~TG~Tl~~a~~~l~~~Ga~v~~~~vlvdr~~~~~~~~l~~~~gv~~~s 166 (173)
T TIGR00336 105 LLEGDKVVVVEDVITTGTSILEAVEIIQAAGGQVAGVIIAVDRQERSAGQEFEKEYGLPVIS 166 (173)
T ss_pred CCCCCEEEEEeccccChHHHHHHHHHHHHcCCeEEEEEEEEecCchhHHHHHHHhcCCeEEE
Confidence 357899999987 66677888999999997532 2222 344555544 777754
No 399
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=24.58 E-value=2.1e+02 Score=20.48 Aligned_cols=47 Identities=17% Similarity=0.371 Sum_probs=29.5
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHHHHHh---CCCcee
Q 031788 94 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQ---NGLKVK 141 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~---~g~~~~ 141 (153)
++++|.++. -|.....-+.-|++.|++-+..+..|-..|.+ +|+++.
T Consensus 3 ~~k~IAViG-yGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~ 52 (165)
T PF07991_consen 3 KGKTIAVIG-YGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVM 52 (165)
T ss_dssp CTSEEEEES--SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECC
T ss_pred CCCEEEEEC-CChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeec
Confidence 567777774 45556677888999999744566666566664 577664
No 400
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=24.31 E-value=1.4e+02 Score=21.81 Aligned_cols=38 Identities=24% Similarity=0.365 Sum_probs=26.4
Q ss_pred HHHHHHHhhccCCCeEEEEeCCCccHHHHHHHHHHCCc
Q 031788 83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGF 120 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~~~G~ 120 (153)
++...+.++...+..+|+.|..+..+..+.+.+++.|+
T Consensus 179 ~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~g~ 216 (299)
T cd04509 179 DFTSLLQKLKAAKPDVIVLCGSGEDAATILKQAAEAGL 216 (299)
T ss_pred cHHHHHHHHHhcCCCEEEEcccchHHHHHHHHHHHcCC
Confidence 44444444433345677777777788888999999998
No 401
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=24.30 E-value=1.9e+02 Score=25.10 Aligned_cols=48 Identities=19% Similarity=0.110 Sum_probs=35.6
Q ss_pred eEEEEeCCCccHHHHHHHHHHCCccceeeccccH---HHHHhCCCceecCCC
Q 031788 97 RLVVGCQSGARSLHATADLLGAGFKHVSNFGGGH---MAWVQNGLKVKAREK 145 (153)
Q Consensus 97 ~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~---~~w~~~g~~~~~~~~ 145 (153)
.=|++|+.|.-++.+++.|.+.|++ +.+++-.. +..++.|.++..++.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~-vvvID~d~~~v~~~~~~g~~v~~GDa 451 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVK-MTVLDHDPDHIETLRKFGMKVFYGDA 451 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCC-EEEEECCHHHHHHHHhcCCeEEEEeC
Confidence 4477788888889999999999987 77776553 346667877766653
No 402
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=24.22 E-value=1.9e+02 Score=24.09 Aligned_cols=35 Identities=11% Similarity=0.040 Sum_probs=27.5
Q ss_pred HHHHHHHHHHCCccceeeccccHHHHHhCCCceec
Q 031788 108 SLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKA 142 (153)
Q Consensus 108 a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~ 142 (153)
+..+|++++..|-.+|-++-..+-.|.+++.++..
T Consensus 218 AltiAEyfrd~g~~~VLli~DdlTr~a~A~REIsl 252 (436)
T PRK02118 218 ALAVAEKFALEGKKKVLVLLTDMTNFADALKEISI 252 (436)
T ss_pred HHHHHHHHHhcCCCCEEEeccCchHHHHHHHHHHH
Confidence 44667888888866799888899999888776653
No 403
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=24.21 E-value=1.2e+02 Score=17.88 Aligned_cols=20 Identities=15% Similarity=0.119 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHHHHHHhhhc
Q 031788 5 RNWVTFLRGLFLLLLICRSS 24 (153)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~ 24 (153)
++.+.+.++|+.|.++.+++
T Consensus 3 ~Kl~vialLC~aLva~vQ~A 22 (65)
T PF10731_consen 3 SKLIVIALLCVALVAIVQSA 22 (65)
T ss_pred chhhHHHHHHHHHHHHHhcC
Confidence 34455555555565555553
No 404
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=24.16 E-value=1.8e+02 Score=21.71 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=28.2
Q ss_pred ccCCCeEEEEeCCCccHHHHHHHHHHCCccc-eeecc
Q 031788 92 CKEEDRLVVGCQSGARSLHATADLLGAGFKH-VSNFG 127 (153)
Q Consensus 92 ~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~-v~~l~ 127 (153)
.+++.+|+.+.....++..|.+.+++.|+++ +..+.
T Consensus 81 l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~ 117 (219)
T COG4122 81 LPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLL 117 (219)
T ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEe
Confidence 5556677777778888999999999999987 55554
No 405
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=24.10 E-value=2.7e+02 Score=19.75 Aligned_cols=105 Identities=15% Similarity=0.134 Sum_probs=57.7
Q ss_pred CcceeecHHHHHHHHhCCCeEEecCChhhhhcCCCC----Cc---ceeCccccccCCCCCCCChHHHHHH--HhhccCCC
Q 031788 26 AEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVD----AA---KIFNIPYMFNTPEGRVKNPDFLKKV--RSLCKEED 96 (153)
Q Consensus 26 ~~~~~i~~~~~~~~~~~~~~iIDvR~~~e~~~ghi~----ga---~~i~ip~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 96 (153)
.....+|......+-+.+.++.+-|..+.+.. +++ .. ......+ .+..+.+ .+....++
T Consensus 10 G~~~~lT~~a~~~l~~advv~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~-----------~~~~~~i~~~~~~~~g~ 77 (210)
T PF00590_consen 10 GDPDLLTLRALEALKNADVVIGPERALEIVRD-LLPEIFPMGKDRESLEESY-----------DEIAEIIEAIEAAKEGK 77 (210)
T ss_dssp SSGGGSBHHHHHHHHHSSEEEEETTCHHHHHH-HHHTEETTSSEEEEEHHHH-----------HHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHhCCcccccccchHHHHh-hccccccccccccchhhhh-----------hHHHHHHHHHHHHhccC
Confidence 34566777766556566788888886555432 211 11 0011112 1444444 33346778
Q ss_pred eEEEEeCCC----ccHHHHHHHHHH--CCccceeecccc--HH-HHHhCCCceecC
Q 031788 97 RLVVGCQSG----ARSLHATADLLG--AGFKHVSNFGGG--HM-AWVQNGLKVKAR 143 (153)
Q Consensus 97 ~ivi~c~~g----~~a~~~~~~L~~--~G~~~v~~l~gG--~~-~w~~~g~~~~~~ 143 (153)
.|++.+.+. .......+.+.+ .|++ +.++.|= ++ +....|.|....
T Consensus 78 ~V~~l~~GDP~~~~~~~~l~~~l~~~~~gi~-v~iiPGiSs~~~a~a~~g~~~~~~ 132 (210)
T PF00590_consen 78 DVVVLVSGDPLFFSTGSYLVRALRAEERGIE-VEIIPGISSFQAAAARLGIPLTDG 132 (210)
T ss_dssp EEEEEESBSTTSSSSHHHHHHHHHHHHTTCE-EEEE--TTHHHHHHHHCTSTSSBT
T ss_pred CEEEeCCCCCCcccHHHHHHHHHHhhcCCCc-eEEEecCcHHHHHHHHHcCCcccC
Confidence 888887533 235667777888 8988 7787762 22 234457666543
No 406
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=24.08 E-value=1.6e+02 Score=20.54 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=23.3
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHCCccceeeccc
Q 031788 94 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGG 128 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~g 128 (153)
.+++++++ ++|.-+.+-++.|.+.|.+ |.++..
T Consensus 12 ~~~~vlVv-GGG~va~rka~~Ll~~ga~-V~VIsp 44 (157)
T PRK06719 12 HNKVVVII-GGGKIAYRKASGLKDTGAF-VTVVSP 44 (157)
T ss_pred CCCEEEEE-CCCHHHHHHHHHHHhCCCE-EEEEcC
Confidence 45565555 5777778888888888876 666643
No 407
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=23.99 E-value=1.3e+02 Score=23.98 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=27.4
Q ss_pred cCCCeEEEEeCCCccHHHHHHHHHHCCccceeec
Q 031788 93 KEEDRLVVGCQSGARSLHATADLLGAGFKHVSNF 126 (153)
Q Consensus 93 ~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l 126 (153)
.++++|+|...+|.-+..++..|.+.||+ |..+
T Consensus 19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~-V~~v 51 (370)
T PLN02695 19 SEKLRICITGAGGFIASHIARRLKAEGHY-IIAS 51 (370)
T ss_pred CCCCEEEEECCccHHHHHHHHHHHhCCCE-EEEE
Confidence 46778888888899999999999999986 6554
No 408
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=23.96 E-value=1.1e+02 Score=22.46 Aligned_cols=35 Identities=23% Similarity=0.269 Sum_probs=20.8
Q ss_pred CCCeEEEEeCCCc---c------HHHHHHHHHHCCccceeeccccHH
Q 031788 94 EEDRLVVGCQSGA---R------SLHATADLLGAGFKHVSNFGGGHM 131 (153)
Q Consensus 94 ~~~~ivi~c~~g~---~------a~~~~~~L~~~G~~~v~~l~gG~~ 131 (153)
.-+++++||.+.. . +.++++.|.+.| .-++.||..
T Consensus 13 ~~~~i~V~~gs~~~~~~~~~~~~a~~lg~~la~~g---~~V~tGG~~ 56 (205)
T COG1611 13 GIRQIVVICGSARGIEPEEYYELARELGRELAKRG---LLVITGGGP 56 (205)
T ss_pred CcceEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC---cEEEeCCch
Confidence 4567888888662 1 345555566666 456666543
No 409
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=23.95 E-value=1.7e+02 Score=22.47 Aligned_cols=44 Identities=16% Similarity=0.136 Sum_probs=31.5
Q ss_pred HHHHHHHhhccCCCeEEEEeCCCccHHHHHHHHHHCCcc-ceeec
Q 031788 83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFK-HVSNF 126 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~-~v~~l 126 (153)
+|...+.++...+-.+|+++..+.....+.+.+++.|+. ...++
T Consensus 178 d~~~~v~~l~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 222 (334)
T cd06327 178 DFSSYLLQAQASGADVLVLANAGADTVNAIKQAAEFGLTKGQKLA 222 (334)
T ss_pred cHHHHHHHHHhCCCCEEEEeccchhHHHHHHHHHHhCCccCCcEE
Confidence 666666665444556888888888888888999999985 44433
No 410
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=23.88 E-value=1.7e+02 Score=23.46 Aligned_cols=50 Identities=20% Similarity=0.203 Sum_probs=36.2
Q ss_pred CCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHHHHHh--CCCceecCC
Q 031788 95 EDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQ--NGLKVKARE 144 (153)
Q Consensus 95 ~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~--~g~~~~~~~ 144 (153)
..+++++|+-|.-.+-.++.|+..|-.-+..=.+.+.+... +|+.+.+-+
T Consensus 213 aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~tm~ 264 (434)
T KOG1370|consen 213 AGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVTTLE 264 (434)
T ss_pred cccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEeeeHH
Confidence 45688999999888999999999996632233346777765 477776543
No 411
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=23.85 E-value=2.7e+02 Score=22.27 Aligned_cols=10 Identities=20% Similarity=0.322 Sum_probs=5.5
Q ss_pred HHHHHHCCcc
Q 031788 112 TADLLGAGFK 121 (153)
Q Consensus 112 ~~~L~~~G~~ 121 (153)
++.|.+.|++
T Consensus 189 a~eL~~~GI~ 198 (329)
T PRK06371 189 AWELAQEGID 198 (329)
T ss_pred HHHHHHCCCC
Confidence 4555555555
No 412
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=23.78 E-value=2.4e+02 Score=21.69 Aligned_cols=46 Identities=20% Similarity=0.228 Sum_probs=31.0
Q ss_pred HHHHHHHhh-c-cCCCeEEEEeCCCccHHHHHHHHHHCCccceeecccc
Q 031788 83 DFLKKVRSL-C-KEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGG 129 (153)
Q Consensus 83 ~~~~~~~~~-~-~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG 129 (153)
-|...+.+. . ..+++++++ +.|..+..++..|...|+.++++++-.
T Consensus 113 G~~~~l~~~~~~~~~k~vlIl-GaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 113 GFAESFRRGLPDASLERVVQL-GAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred HHHHHHHhhccCccCCEEEEE-CCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 455555432 1 234556655 567777888999999999888887654
No 413
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=23.75 E-value=1.4e+02 Score=21.58 Aligned_cols=23 Identities=13% Similarity=0.049 Sum_probs=9.3
Q ss_pred EEEEeCCCccHHHHHHHHHHCCc
Q 031788 98 LVVGCQSGARSLHATADLLGAGF 120 (153)
Q Consensus 98 ivi~c~~g~~a~~~~~~L~~~G~ 120 (153)
++|...+|.-+..++..|.+.|+
T Consensus 9 ilItGasg~iG~~l~~~l~~~g~ 31 (251)
T PRK12826 9 ALVTGAARGIGRAIAVRLAADGA 31 (251)
T ss_pred EEEcCCCCcHHHHHHHHHHHCCC
Confidence 33333333334444444444443
No 414
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=23.70 E-value=1.7e+02 Score=22.92 Aligned_cols=38 Identities=16% Similarity=0.331 Sum_probs=28.7
Q ss_pred HHHHHHHhhccCCCeEEEEeCCCccHHHHHHHHHHCCcc
Q 031788 83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFK 121 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~ 121 (153)
++...+.++...+ .+|+.|..+..+..+.+.+.++|+.
T Consensus 183 d~~~~l~~i~~~~-~vii~~~~~~~~~~~l~q~~~~g~~ 220 (389)
T cd06352 183 DLLEILQDIKRRS-RIIIMCGSSEDVRELLLAAHDLGLT 220 (389)
T ss_pred hHHHHHHHhhhcc-eEEEEECCHHHHHHHHHHHHHcCCC
Confidence 6666666653344 7888888877788888899999985
No 415
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=23.70 E-value=1.4e+02 Score=21.85 Aligned_cols=31 Identities=23% Similarity=0.092 Sum_probs=19.3
Q ss_pred CCeEEEEeCCCccHHHHHHHHHHCCccceeec
Q 031788 95 EDRLVVGCQSGARSLHATADLLGAGFKHVSNF 126 (153)
Q Consensus 95 ~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l 126 (153)
++.++|...++.-+..+++.|.+.|++ |..+
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~~-V~~~ 40 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGAE-VILN 40 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCCE-EEEE
Confidence 455666655666666777777777764 4433
No 416
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=23.70 E-value=1.5e+02 Score=21.53 Aligned_cols=25 Identities=16% Similarity=0.048 Sum_probs=11.6
Q ss_pred CeEEEEeCCCccHHHHHHHHHHCCc
Q 031788 96 DRLVVGCQSGARSLHATADLLGAGF 120 (153)
Q Consensus 96 ~~ivi~c~~g~~a~~~~~~L~~~G~ 120 (153)
+.++|...++.-+..+++.|.+.|+
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~ 30 (248)
T TIGR01832 6 KVALVTGANTGLGQGIAVGLAEAGA 30 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC
Confidence 3444444444444444555555554
No 417
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=23.69 E-value=1.3e+02 Score=18.90 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=24.4
Q ss_pred CeEEEEeCCCccHHHHHHHHHHCCccceeecccc
Q 031788 96 DRLVVGCQSGARSLHATADLLGAGFKHVSNFGGG 129 (153)
Q Consensus 96 ~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG 129 (153)
-.+.+.|=....++.++..|.+.|.+.+..+..|
T Consensus 63 i~iaii~VP~~~a~~~~~~~~~~gIk~i~nft~~ 96 (96)
T PF02629_consen 63 IDIAIITVPAEAAQEVADELVEAGIKGIVNFTPG 96 (96)
T ss_dssp TSEEEEES-HHHHHHHHHHHHHTT-SEEEEESSS
T ss_pred CCEEEEEcCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 4556666666678899999999999988877543
No 418
>PRK06936 type III secretion system ATPase; Provisional
Probab=23.58 E-value=2.2e+02 Score=23.78 Aligned_cols=32 Identities=6% Similarity=-0.017 Sum_probs=24.9
Q ss_pred HHHHHHHHHCCccceeeccccHHHHHhCCCcee
Q 031788 109 LHATADLLGAGFKHVSNFGGGHMAWVQNGLKVK 141 (153)
Q Consensus 109 ~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~ 141 (153)
...|+++++.|. ||-.+...+..|.++..++.
T Consensus 241 ~tiAEyfrd~G~-~Vll~~DslTR~A~A~REis 272 (439)
T PRK06936 241 TSIAEYFRDQGK-RVLLLMDSVTRFARAQREIG 272 (439)
T ss_pred HHHHHHHHHcCC-CEEEeccchhHHHHHHHHHH
Confidence 456888999996 58888889988888765554
No 419
>PRK06523 short chain dehydrogenase; Provisional
Probab=23.53 E-value=1.5e+02 Score=21.76 Aligned_cols=32 Identities=25% Similarity=0.223 Sum_probs=23.1
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHCCccceeec
Q 031788 94 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNF 126 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l 126 (153)
+++.++|...++.-...+++.|.+.|++ |..+
T Consensus 8 ~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~ 39 (260)
T PRK06523 8 AGKRALVTGGTKGIGAATVARLLEAGAR-VVTT 39 (260)
T ss_pred CCCEEEEECCCCchhHHHHHHHHHCCCE-EEEE
Confidence 3566777766777788888888888875 5443
No 420
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=23.50 E-value=3.9e+02 Score=21.42 Aligned_cols=37 Identities=16% Similarity=0.133 Sum_probs=18.6
Q ss_pred HHHHHHHhhccCCCeEEEEeCCCccHHHHHHHHHHCCcc
Q 031788 83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFK 121 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~ 121 (153)
....++.++ +|+ .|+++.+.-.-+......|+++|++
T Consensus 66 s~~~eI~~l-npd-~VLIIGGp~AVs~~yE~~Lks~Git 102 (337)
T COG2247 66 SVLDEIIEL-NPD-LVLIIGGPIAVSPNYENALKSLGIT 102 (337)
T ss_pred HHHHHHHhh-CCc-eEEEECCCCcCChhHHHHHHhCCcE
Confidence 444555554 333 3444433333456666666666655
No 421
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=23.50 E-value=2.3e+02 Score=20.46 Aligned_cols=32 Identities=28% Similarity=0.134 Sum_probs=24.3
Q ss_pred CCeEEEEeCCCccHHHHHHHHHHCCccceeec
Q 031788 95 EDRLVVGCQSGARSLHATADLLGAGFKHVSNF 126 (153)
Q Consensus 95 ~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l 126 (153)
.++..++|.+...+..+.+.|++.|++++.++
T Consensus 180 ~~~~ai~~~~d~~a~~~~~~l~~~g~~di~ii 211 (268)
T cd06323 180 PDIKGVFAQNDEMALGAIEALKAAGKDDVKVV 211 (268)
T ss_pred CCcCEEEEcCCchHHHHHHHHHHcCCCCcEEE
Confidence 34567888888888888999999998555544
No 422
>PRK10329 glutaredoxin-like protein; Provisional
Probab=23.50 E-value=1.5e+02 Score=18.08 Aligned_cols=25 Identities=12% Similarity=0.252 Sum_probs=18.6
Q ss_pred eEEEEeC-CCccHHHHHHHHHHCCcc
Q 031788 97 RLVVGCQ-SGARSLHATADLLGAGFK 121 (153)
Q Consensus 97 ~ivi~c~-~g~~a~~~~~~L~~~G~~ 121 (153)
+|.+|.. ++..+.++-..|.+.|++
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~ 27 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFD 27 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCc
Confidence 4677775 667777888888888875
No 423
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=23.39 E-value=1.2e+02 Score=25.39 Aligned_cols=34 Identities=29% Similarity=0.174 Sum_probs=27.6
Q ss_pred CCCeEEEEeC---CCccHHHHHHHHHHCCccceeecc
Q 031788 94 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNFG 127 (153)
Q Consensus 94 ~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~~l~ 127 (153)
++++|+++++ +|.....+++.|++.|-..|+...
T Consensus 359 ~gk~vvlvDD~i~tG~Tl~~~~~~l~~~Ga~~v~~~~ 395 (479)
T PRK09123 359 EGKRVVLVDDSIVRGTTSRKIVQMLRDAGAKEVHLRI 395 (479)
T ss_pred CCCEEEEEeceeCchHHHHHHHHHHHHcCCCEEEEEE
Confidence 5788999987 677778899999999988776543
No 424
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=23.38 E-value=1.5e+02 Score=21.52 Aligned_cols=26 Identities=12% Similarity=0.066 Sum_probs=10.7
Q ss_pred CCeEEEEeCCCccHHHHHHHHHHCCc
Q 031788 95 EDRLVVGCQSGARSLHATADLLGAGF 120 (153)
Q Consensus 95 ~~~ivi~c~~g~~a~~~~~~L~~~G~ 120 (153)
++.++|...++.-+...++.|.+.|+
T Consensus 12 ~k~vlItG~~g~iG~~la~~l~~~G~ 37 (247)
T PRK08945 12 DRIILVTGAGDGIGREAALTYARHGA 37 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 33344443343344444444444443
No 425
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=23.25 E-value=2.4e+02 Score=21.84 Aligned_cols=45 Identities=16% Similarity=0.215 Sum_probs=28.4
Q ss_pred HHHHHHHhh-cc-CCCeEEEEeCCCccHHHHHHHHHHCCccceeeccc
Q 031788 83 DFLKKVRSL-CK-EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGG 128 (153)
Q Consensus 83 ~~~~~~~~~-~~-~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~g 128 (153)
-|..-+.+. .+ ++++++++. .|..+.-++..|...|..+++++.=
T Consensus 110 Gf~~~l~~~~~~~~~k~vlvlG-aGGaarAi~~~l~~~g~~~i~i~nR 156 (288)
T PRK12749 110 GHIRAIKESGFDIKGKTMVLLG-AGGASTAIGAQGAIEGLKEIKLFNR 156 (288)
T ss_pred HHHHHHHhcCCCcCCCEEEEEC-CcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 455555443 22 456666664 4555666777788899988877643
No 426
>PRK10113 cell division modulator; Provisional
Probab=23.23 E-value=13 Score=22.34 Aligned_cols=44 Identities=14% Similarity=0.132 Sum_probs=29.9
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHHHHHhCCC
Q 031788 94 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGL 138 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~ 138 (153)
.+++||-|...-.-+.. ...++--||.+|++|.|-+.++.-.|.
T Consensus 8 qnr~visyvprvepapp-~ha~kmd~frDVW~LrGKYVAFvl~ge 51 (80)
T PRK10113 8 QNRQIISYVPRVEPAPP-EHAIKMDSFRDVWMLRGKYVAFVLMGE 51 (80)
T ss_pred cCCcceeecccCCCCCc-hHhhhhcchhhhheeccceEEEEEech
Confidence 57888888774433322 345666799999999998877654443
No 427
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=23.21 E-value=1.6e+02 Score=23.85 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=16.8
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHCCcc
Q 031788 94 EEDRLVVGCQSGARSLHATADLLGAGFK 121 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~ 121 (153)
++++|++-..+|..|..++..|++.|++
T Consensus 4 ~~~kVlVa~SGGvDSsv~a~lL~~~G~e 31 (362)
T PRK14664 4 SKKRVLVGMSGGIDSTATCLMLQEQGYE 31 (362)
T ss_pred CCCEEEEEEeCCHHHHHHHHHHHHcCCc
Confidence 3455666655666666666666666664
No 428
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=23.21 E-value=1.2e+02 Score=22.20 Aligned_cols=28 Identities=14% Similarity=0.052 Sum_probs=19.7
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHCCcc
Q 031788 94 EEDRLVVGCQSGARSLHATADLLGAGFK 121 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~ 121 (153)
+++.++|...++.-+...++.|.+.|+.
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G~~ 41 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAGAD 41 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCE
Confidence 4566666666666677777777777776
No 429
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=23.13 E-value=1.5e+02 Score=22.14 Aligned_cols=34 Identities=18% Similarity=0.105 Sum_probs=25.7
Q ss_pred CCCeEEEEeC---CCccHHHHHHHHHHCCccceeecc
Q 031788 94 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNFG 127 (153)
Q Consensus 94 ~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~~l~ 127 (153)
+++.+|++++ +|.+..-+.+.+++.|-.++.+..
T Consensus 123 ~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~IviAV 159 (220)
T COG1926 123 KGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAV 159 (220)
T ss_pred CCCEEEEEeCCcchhHHHHHHHHHHHhcCCceEEEEc
Confidence 5577888876 566677888899999988876543
No 430
>PRK14968 putative methyltransferase; Provisional
Probab=23.13 E-value=2.6e+02 Score=19.22 Aligned_cols=40 Identities=23% Similarity=0.189 Sum_probs=26.1
Q ss_pred HHHHHHHhhccCCCeEEEEeCCCccHHHHHHHHHHCCccc
Q 031788 83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKH 122 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~ 122 (153)
.+.+.+...+.++..++++..+...-......+.+.||..
T Consensus 129 ~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~ 168 (188)
T PRK14968 129 RFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEA 168 (188)
T ss_pred HHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCee
Confidence 3455555556777777666555444566778888889864
No 431
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=23.12 E-value=2.7e+02 Score=19.35 Aligned_cols=58 Identities=22% Similarity=0.236 Sum_probs=34.4
Q ss_pred HHHHHHh-CCCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh--ccCCCeEEEEeCCCccHHHH
Q 031788 35 AAKNLLE-SGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL--CKEEDRLVVGCQSGARSLHA 111 (153)
Q Consensus 35 ~~~~~~~-~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivi~c~~g~~a~~~ 111 (153)
++.++++ .++.++|+-+..+ .+ ...| ++...+... -.+.+.-|++|.+|.-...+
T Consensus 16 ~l~~~L~~~g~eV~D~G~~~~-------~~--~dYp-------------d~a~~va~~V~~~~~~~GIliCGtGiG~sia 73 (143)
T TIGR01120 16 EIKAFLVERGVKVIDKGTWSS-------ER--TDYP-------------HYAKQVALAVAGGEVDGGILICGTGIGMSIA 73 (143)
T ss_pred HHHHHHHHCCCEEEEeCCCCC-------CC--CCHH-------------HHHHHHHHHHHCCCCceEEEEcCCcHHHHHH
Confidence 3455555 4588999876421 12 2222 444444444 24567899999999765555
Q ss_pred HHH
Q 031788 112 TAD 114 (153)
Q Consensus 112 ~~~ 114 (153)
+..
T Consensus 74 ANK 76 (143)
T TIGR01120 74 ANK 76 (143)
T ss_pred Hhc
Confidence 554
No 432
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=23.08 E-value=2.9e+02 Score=19.83 Aligned_cols=58 Identities=28% Similarity=0.349 Sum_probs=34.5
Q ss_pred HHHHHHh-CCCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh--ccCCCeEEEEeCCCccHHHH
Q 031788 35 AAKNLLE-SGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL--CKEEDRLVVGCQSGARSLHA 111 (153)
Q Consensus 35 ~~~~~~~-~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivi~c~~g~~a~~~ 111 (153)
.+.++++ .+..++|.-+..+ .+ ...| ++...+.+. -.+.+.-|++|.+|.-...+
T Consensus 17 ~l~~~L~~~G~eV~D~G~~~~-------~~--~dYp-------------d~a~~va~~V~~g~~d~GIliCGTGiG~sia 74 (171)
T PRK12615 17 AVSDFLKSKGYDVIDCGTYDH-------TR--THYP-------------IFGKKVGEAVVNGQADLGVCICGTGVGINNA 74 (171)
T ss_pred HHHHHHHHCCCEEEEcCCCCC-------CC--CChH-------------HHHHHHHHHHHcCCCCEEEEEcCCcHHHHHH
Confidence 4555665 4688999876422 12 2222 444444444 24567899999999765555
Q ss_pred HHH
Q 031788 112 TAD 114 (153)
Q Consensus 112 ~~~ 114 (153)
+..
T Consensus 75 ANK 77 (171)
T PRK12615 75 VNK 77 (171)
T ss_pred Hhc
Confidence 554
No 433
>PRK14599 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Provisional
Probab=23.05 E-value=1.9e+02 Score=21.76 Aligned_cols=8 Identities=13% Similarity=-0.068 Sum_probs=4.3
Q ss_pred CeEEEEeC
Q 031788 96 DRLVVGCQ 103 (153)
Q Consensus 96 ~~ivi~c~ 103 (153)
+.++++|+
T Consensus 104 ~~liliCG 111 (222)
T PRK14599 104 KPLTFISG 111 (222)
T ss_pred CCEEEEec
Confidence 44555555
No 434
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=22.96 E-value=95 Score=22.79 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=17.2
Q ss_pred HHHHHHHHHHCCccceeeccccH
Q 031788 108 SLHATADLLGAGFKHVSNFGGGH 130 (153)
Q Consensus 108 a~~~~~~L~~~G~~~v~~l~gG~ 130 (153)
+..+.+.|.++|+. +++|+|-.
T Consensus 40 A~ale~~L~~~G~~-~y~LDGDn 61 (197)
T COG0529 40 ANALEEKLFAKGYH-VYLLDGDN 61 (197)
T ss_pred HHHHHHHHHHcCCe-EEEecChh
Confidence 45667788899987 99999864
No 435
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=22.89 E-value=1.2e+02 Score=24.31 Aligned_cols=81 Identities=15% Similarity=0.274 Sum_probs=49.5
Q ss_pred CeEEecCChhhhhcCCCC-----CcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEE----------eCCCccH
Q 031788 44 YGYLDVRTAEEFKEGHVD-----AAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVG----------CQSGARS 108 (153)
Q Consensus 44 ~~iIDvR~~~e~~~ghi~-----ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~----------c~~g~~a 108 (153)
.++-+.|...+ +.|+=| |..+.++++.+.+......+..|+.++. |..||++- ..-...+
T Consensus 157 ~viAEmrG~~D-e~G~SPFWd~lg~hFF~mdF~eAD~Lsg~~~k~FIaeLM----P~~PIYv~LLp~eAq~vIG~vH~~t 231 (336)
T TIGR03245 157 RIIVEIQGVQD-DNGDSPFWDAIGRHFFDLDFATAEYYSGIKSKTFIAELM----PPYPIYVPLLPDDAQDAIGQPHPHA 231 (336)
T ss_pred hheeeccCccC-CCCCCccHHHhhccccCCCHHHHHHHhcCCCceeHHHHC----CCCCcccccCCHHHHHHhCCcCCCC
Confidence 56778887766 555554 4445666665443333333446777665 44555542 2333456
Q ss_pred HHHHHHHHHCCccc---eeecccc
Q 031788 109 LHATADLLGAGFKH---VSNFGGG 129 (153)
Q Consensus 109 ~~~~~~L~~~G~~~---v~~l~gG 129 (153)
..+.+.|.+-||.. |-+++||
T Consensus 232 ~pA~~lLe~EGF~~~~yVDIFDgG 255 (336)
T TIGR03245 232 RDNCQILNREGFEMDRYIDIFDGG 255 (336)
T ss_pred HHHHHHHHHcCCccCCcccccCCC
Confidence 78888999999853 5577777
No 436
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=22.76 E-value=96 Score=18.83 Aligned_cols=31 Identities=10% Similarity=-0.071 Sum_probs=22.1
Q ss_pred cCCCeEEEEeCCCccHHHHHHHHHHCCccceeecccc
Q 031788 93 KEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGG 129 (153)
Q Consensus 93 ~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG 129 (153)
++-..|.+.. ......+++.|..+|+.|.=+
T Consensus 17 ~~~~~iFt~D------~~~~~~~~~~G~~~V~yLPLA 47 (79)
T PF12996_consen 17 NSYDYIFTFD------RSFVEEYRNLGAENVFYLPLA 47 (79)
T ss_pred CCCCEEEEEC------HHHHHHHHHcCCCCEEEcccc
Confidence 3445555554 346888999999999988654
No 437
>PRK07890 short chain dehydrogenase; Provisional
Probab=22.73 E-value=1.6e+02 Score=21.45 Aligned_cols=25 Identities=16% Similarity=0.023 Sum_probs=11.8
Q ss_pred CeEEEEeCCCccHHHHHHHHHHCCc
Q 031788 96 DRLVVGCQSGARSLHATADLLGAGF 120 (153)
Q Consensus 96 ~~ivi~c~~g~~a~~~~~~L~~~G~ 120 (153)
+.++|...++.-+...+..|.+.|+
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~ 30 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGA 30 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCC
Confidence 3444444444444444555555554
No 438
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=22.67 E-value=1.5e+02 Score=22.79 Aligned_cols=32 Identities=34% Similarity=0.419 Sum_probs=22.6
Q ss_pred eEEEEeC---CCc--cHHHHHHHHHHCCcc-ceeeccc
Q 031788 97 RLVVGCQ---SGA--RSLHATADLLGAGFK-HVSNFGG 128 (153)
Q Consensus 97 ~ivi~c~---~g~--~a~~~~~~L~~~G~~-~v~~l~g 128 (153)
++|++|+ +|. +|......|.+.|-. .|++.+.
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~d 39 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDD 39 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEech
Confidence 5788988 453 567778888888865 4566554
No 439
>PRK07060 short chain dehydrogenase; Provisional
Probab=22.66 E-value=1.5e+02 Score=21.35 Aligned_cols=31 Identities=16% Similarity=0.112 Sum_probs=19.1
Q ss_pred CCeEEEEeCCCccHHHHHHHHHHCCccceeec
Q 031788 95 EDRLVVGCQSGARSLHATADLLGAGFKHVSNF 126 (153)
Q Consensus 95 ~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l 126 (153)
+++++|...++.-+..++..|.+.|++ |..+
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~g~~-V~~~ 39 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQRGAR-VVAA 39 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHCCCE-EEEE
Confidence 455666655666666667777777764 5444
No 440
>PF13362 Toprim_3: Toprim domain
Probab=22.66 E-value=2e+02 Score=17.77 Aligned_cols=33 Identities=21% Similarity=0.305 Sum_probs=21.3
Q ss_pred cCCCeEEEEeCCCcc------HHHHHHHHHHCCccceeec
Q 031788 93 KEEDRLVVGCQSGAR------SLHATADLLGAGFKHVSNF 126 (153)
Q Consensus 93 ~~~~~ivi~c~~g~~------a~~~~~~L~~~G~~~v~~l 126 (153)
.+.++|+++.+.+.. +..+++.|...|+. +.++
T Consensus 39 ~~~~~vii~~D~D~~~~G~~~a~~~~~~~~~~g~~-~~~~ 77 (96)
T PF13362_consen 39 EPGRRVIIAADNDKANEGQKAAEKAAERLEAAGIA-VSIV 77 (96)
T ss_pred CCCCeEEEEECCCCchhhHHHHHHHHHHHHhCCCe-EEEE
Confidence 366778887774444 45666777788877 4443
No 441
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=22.65 E-value=1.4e+02 Score=21.17 Aligned_cols=36 Identities=19% Similarity=0.068 Sum_probs=24.7
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccH
Q 031788 94 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGH 130 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~ 130 (153)
.+++++++..++.-+..++..|.+.|. +|++..--.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~~ 78 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSKT 78 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECCc
Confidence 567777775443446779999999998 476665443
No 442
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=22.64 E-value=1.2e+02 Score=24.26 Aligned_cols=81 Identities=17% Similarity=0.247 Sum_probs=49.3
Q ss_pred CeEEecCChhhhhcCCCC-----CcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEE----------eCCCccH
Q 031788 44 YGYLDVRTAEEFKEGHVD-----AAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVG----------CQSGARS 108 (153)
Q Consensus 44 ~~iIDvR~~~e~~~ghi~-----ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~----------c~~g~~a 108 (153)
.++-+.|...+ +.|+=| |..+.++++.+.+......+..|+.++. |..||++- ..-...+
T Consensus 156 ~viAEmrG~~D-e~G~SPFWd~lg~hFF~mdF~~AD~Lsg~~~k~FIaeLM----P~~PIYv~LLp~eAq~vIG~vH~~t 230 (335)
T TIGR03243 156 KIIAEMRGVSD-EQGRSPFWEALGRHFFSMDFAQADYLSGIGSKTFIAELM----PKYPIYVPLLPEEAQDVIGQVHPDT 230 (335)
T ss_pred hheeeccCccC-CCCCCccHHHhhccccCCCHHHHHHHhcCCCceeHHHHC----CCCCcccccCCHHHHHHhCCcCCCC
Confidence 56777787666 555554 4445666665443333334446777665 44555542 2233456
Q ss_pred HHHHHHHHHCCccc---eeecccc
Q 031788 109 LHATADLLGAGFKH---VSNFGGG 129 (153)
Q Consensus 109 ~~~~~~L~~~G~~~---v~~l~gG 129 (153)
..+.+.|.+-||.. |-+++||
T Consensus 231 ~pA~~lLe~EGF~~~~yVDIFDgG 254 (335)
T TIGR03243 231 RPARAMLESEGFRYQGYVDIFDAG 254 (335)
T ss_pred HHHHHHHHHcCCCcCCcccccCCC
Confidence 78888999999863 5577777
No 443
>PRK09135 pteridine reductase; Provisional
Probab=22.64 E-value=1.6e+02 Score=21.13 Aligned_cols=26 Identities=12% Similarity=0.158 Sum_probs=14.7
Q ss_pred CeEEEEeCCCccHHHHHHHHHHCCcc
Q 031788 96 DRLVVGCQSGARSLHATADLLGAGFK 121 (153)
Q Consensus 96 ~~ivi~c~~g~~a~~~~~~L~~~G~~ 121 (153)
+.++|...+|.-...+++.|.+.|++
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~~g~~ 32 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHAAGYR 32 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCE
Confidence 44555544555566666666666654
No 444
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=22.62 E-value=2.1e+02 Score=21.22 Aligned_cols=39 Identities=26% Similarity=0.353 Sum_probs=29.5
Q ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCccHHHHHHHHHH
Q 031788 79 VKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLG 117 (153)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~~ 117 (153)
++.+.|...+..+....++|.+|++..-++-.+.+.+..
T Consensus 137 id~d~f~~~~~~~~~~~~~itvy~s~~D~AL~~S~~~~~ 175 (233)
T PF05990_consen 137 IDNDVFRSQLPDLGSSARRITVYYSRNDRALKASRRLNG 175 (233)
T ss_pred CCHHHHHHHHHHHhhcCCCEEEEEcCCchHHHHHHHHhC
Confidence 334477777776656679999999988888888887763
No 445
>PF02961 BAF: Barrier to autointegration factor; InterPro: IPR004122 Barrier-to-autointegration factor (BAF) is an essential protein that is highly conserved in metazoan evolution, and which may act as a DNA-bridging protein []. BAF binds directly to double-stranded DNA, to transcription activators, and to inner nuclear membrane proteins, including lamin A filament proteins that anchor nuclear-pore complexes in place, and nuclear LEM-domain proteins that bind to laminins filaments and chromatin. New findings suggest that BAF has structural roles in nuclear assembly and chromatin organisation, represses gene expression and might interlink chromatin structure, nuclear architecture and gene regulation in metazoans []. BAF can be exploited by retroviruses to act as a host component of pre-integration complexes, which promote the integration of the retroviral DNA into the host chromosome by preventing autointegration of retroviral DNA []. BAF might contribute to the assembly or activity of retroviral pre-integration complexes through direct binding to the retroviral proteins p55 Gag and matrix, as well as to DNA.; GO: 0003677 DNA binding; PDB: 2ODG_A 2BZF_A 2EZX_B 2EZY_B 1QCK_B 1CI4_B 2EZZ_B.
Probab=22.55 E-value=33 Score=21.89 Aligned_cols=24 Identities=17% Similarity=0.038 Sum_probs=17.1
Q ss_pred cHHHHHHHHHHCCccceeeccccH
Q 031788 107 RSLHATADLLGAGFKHVSNFGGGH 130 (153)
Q Consensus 107 ~a~~~~~~L~~~G~~~v~~l~gG~ 130 (153)
.....+..|.+.||++.|.+.|=|
T Consensus 27 IG~~lg~~L~~~GfdKAy~vLGqf 50 (89)
T PF02961_consen 27 IGPVLGKRLEEKGFDKAYVVLGQF 50 (89)
T ss_dssp --HHHHHHHHHTT--BHHHHHHHH
T ss_pred cCHHHHHHHHHCCCcHHHHHhhhh
Confidence 467889999999999998887754
No 446
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=22.51 E-value=1.5e+02 Score=25.69 Aligned_cols=32 Identities=13% Similarity=0.293 Sum_probs=25.1
Q ss_pred HHHHHHHHHCCccceeeccccHHHHHhCCCcee
Q 031788 109 LHATADLLGAGFKHVSNFGGGHMAWVQNGLKVK 141 (153)
Q Consensus 109 ~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~ 141 (153)
...|++++++|++ |-.+......|.++..++.
T Consensus 314 ~tiAEYfRD~G~~-Vll~~DS~tR~AeAlREIs 345 (591)
T TIGR01042 314 ITLAEYFRDMGYN-VSMMADSTSRWAEALREIS 345 (591)
T ss_pred HHHHHHHHhcCCC-EEEEecChHHHHHHHHHHH
Confidence 3567889999975 8888889999988755544
No 447
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=22.51 E-value=2.2e+02 Score=24.54 Aligned_cols=48 Identities=13% Similarity=0.032 Sum_probs=35.2
Q ss_pred eEEEEeCCCccHHHHHHHHHHCCccceeeccccHH---HHHhCCCceecCCC
Q 031788 97 RLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM---AWVQNGLKVKAREK 145 (153)
Q Consensus 97 ~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~---~w~~~g~~~~~~~~ 145 (153)
.=|++|+.|.-++.+++.|.+.|++ +.+++-..+ ..++.|.++..++.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~-vvvID~d~~~v~~~~~~g~~v~~GDa 451 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMR-ITVLERDISAVNLMRKYGYKVYYGDA 451 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCC-EEEEECCHHHHHHHHhCCCeEEEeeC
Confidence 3477888888889999999999987 677766543 35556777766653
No 448
>PRK15083 PTS system mannitol-specific transporter subunit IICBA; Provisional
Probab=22.51 E-value=1.4e+02 Score=26.06 Aligned_cols=34 Identities=21% Similarity=0.391 Sum_probs=23.2
Q ss_pred CCCeEEEEeCCCccHH-----HHHHHHHHCCccceeecc
Q 031788 94 EEDRLVVGCQSGARSL-----HATADLLGAGFKHVSNFG 127 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~-----~~~~~L~~~G~~~v~~l~ 127 (153)
+-++++++|++|..+. ..-+.|++.|.+++.+..
T Consensus 377 ~~kkilvVC~sG~GsS~m~~~~l~~~l~~~~i~~i~i~~ 415 (639)
T PRK15083 377 HVRKIIVACDAGMGSSAMGAGVLRKKVQDAGLSQISVTN 415 (639)
T ss_pred ccCEEEEECCCCccHHHHHHHHHHHHHHHcCCCeeEEEE
Confidence 4578999999887655 455667777766554443
No 449
>PRK10444 UMP phosphatase; Provisional
Probab=22.51 E-value=1.9e+02 Score=21.71 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=23.5
Q ss_pred HHHHHHHhhccCCCeEEEEeCCCcc-HHHHHHHHHHCCc
Q 031788 83 DFLKKVRSLCKEEDRLVVGCQSGAR-SLHATADLLGAGF 120 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~ivi~c~~g~~-a~~~~~~L~~~G~ 120 (153)
++.+.+. ..+.++++..+...+ ....++.|..+|+
T Consensus 24 ~~l~~L~---~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~ 59 (248)
T PRK10444 24 EFLHRIL---DKGLPLVLLTNYPSQTGQDLANRFATAGV 59 (248)
T ss_pred HHHHHHH---HCCCeEEEEeCCCCCCHHHHHHHHHHcCC
Confidence 4444444 357888888776654 4677888888887
No 450
>PRK09401 reverse gyrase; Reviewed
Probab=22.49 E-value=1.3e+02 Score=28.28 Aligned_cols=35 Identities=14% Similarity=0.004 Sum_probs=29.4
Q ss_pred CCeEEEEeCCCcc---HHHHHHHHHHCCccceeeccccH
Q 031788 95 EDRLVVGCQSGAR---SLHATADLLGAGFKHVSNFGGGH 130 (153)
Q Consensus 95 ~~~ivi~c~~g~~---a~~~~~~L~~~G~~~v~~l~gG~ 130 (153)
+...+|+|++... +..++..|...|+. +..+.|++
T Consensus 328 ~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~-v~~~hg~l 365 (1176)
T PRK09401 328 GDGGLIFVPSDKGKEYAEELAEYLEDLGIN-AELAISGF 365 (1176)
T ss_pred CCCEEEEEecccChHHHHHHHHHHHHCCCc-EEEEeCcH
Confidence 3568999998776 88999999999997 77888886
No 451
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=22.49 E-value=2.3e+02 Score=23.29 Aligned_cols=35 Identities=6% Similarity=-0.022 Sum_probs=26.5
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHCCccceeecccc
Q 031788 94 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGG 129 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG 129 (153)
.+++++++ +.|..+..++..|...|+.++++..=.
T Consensus 180 ~~kkvlvi-GaG~~a~~va~~L~~~g~~~I~V~nRt 214 (414)
T PRK13940 180 SSKNVLII-GAGQTGELLFRHVTALAPKQIMLANRT 214 (414)
T ss_pred cCCEEEEE-cCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 45555555 678888999999999999888776544
No 452
>PF06866 DUF1256: Protein of unknown function (DUF1256); InterPro: IPR009665 This family consists of several uncharacterised bacterial proteins, which seem to be specific to the orders Clostridia and Bacillales. Family members are typically around 180 residues in length. The function of this family is unknown.
Probab=22.48 E-value=1.9e+02 Score=20.66 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=28.7
Q ss_pred HHHHHHHhhccC-CCeEEEEeCCCcc------HHHHHHHHHHCCcccee
Q 031788 83 DFLKKVRSLCKE-EDRLVVGCQSGAR------SLHATADLLGAGFKHVS 124 (153)
Q Consensus 83 ~~~~~~~~~~~~-~~~ivi~c~~g~~------a~~~~~~L~~~G~~~v~ 124 (153)
++.+.+.+.+.+ .++++++|=+-.| ..-+...|.+.++.+..
T Consensus 11 ~l~~~L~~~~~~~~~~iv~lCIGTDRstGDsLGPLVGt~L~~~~~~~~~ 59 (163)
T PF06866_consen 11 KLANFLYSLIPKHNREIVFLCIGTDRSTGDSLGPLVGTKLKEMGFPNFN 59 (163)
T ss_pred HHHHHHHHHHhhcCCCEEEEEECCCCCccccccchhhHHHHhcCCCCce
Confidence 455555555333 8889999863333 57889999999998433
No 453
>PRK07454 short chain dehydrogenase; Provisional
Probab=22.43 E-value=1.7e+02 Score=21.14 Aligned_cols=11 Identities=18% Similarity=0.018 Sum_probs=4.9
Q ss_pred CCCeEEEEeCC
Q 031788 94 EEDRLVVGCQS 104 (153)
Q Consensus 94 ~~~~ivi~c~~ 104 (153)
.+.+|++.+.+
T Consensus 29 ~G~~V~~~~r~ 39 (241)
T PRK07454 29 AGWDLALVARS 39 (241)
T ss_pred CCCEEEEEeCC
Confidence 34444444443
No 454
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=22.42 E-value=1.5e+02 Score=23.15 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=22.4
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHCCccceeec
Q 031788 94 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNF 126 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l 126 (153)
++++|+|...+|.-+..++..|.+.|++ |..+
T Consensus 3 ~~k~ilItGatG~IG~~l~~~L~~~G~~-V~~~ 34 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWLSLWLLELGAE-VYGY 34 (349)
T ss_pred CCCEEEEECCCChhHHHHHHHHHHCCCE-EEEE
Confidence 3566777776777777778888888865 5443
No 455
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=22.42 E-value=1.8e+02 Score=21.77 Aligned_cols=45 Identities=18% Similarity=0.196 Sum_probs=27.1
Q ss_pred hHHHHHHHhh-ccCCCe-EEEEeCCCccHHHHHHHHHHCCccceeeccccHH
Q 031788 82 PDFLKKVRSL-CKEEDR-LVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 131 (153)
Q Consensus 82 ~~~~~~~~~~-~~~~~~-ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~ 131 (153)
+-+.+++.++ .+++.+ +|.-|+.|.. +..|.+.||+ |..++-.-.
T Consensus 30 p~L~~~~~~l~~~~~~rvLvPgCGkg~D----~~~LA~~G~~-V~GvDlS~~ 76 (226)
T PRK13256 30 EFLVKHFSKLNINDSSVCLIPMCGCSID----MLFFLSKGVK-VIGIELSEK 76 (226)
T ss_pred HHHHHHHHhcCCCCCCeEEEeCCCChHH----HHHHHhCCCc-EEEEecCHH
Confidence 3555666665 334444 5555665433 6677889998 776665543
No 456
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=22.41 E-value=2.1e+02 Score=20.46 Aligned_cols=39 Identities=13% Similarity=0.029 Sum_probs=29.2
Q ss_pred cCCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHHH
Q 031788 93 KEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMA 132 (153)
Q Consensus 93 ~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~ 132 (153)
.+++.++++.++.....+.++.+...||. |..-.+.-++
T Consensus 7 ~pd~~lllvdDD~~f~~~LaRa~e~RGf~-v~~a~~~~ea 45 (182)
T COG4567 7 GPDKSLLLVDDDTPFLRTLARAMERRGFA-VVTAESVEEA 45 (182)
T ss_pred CCCceeEEecCChHHHHHHHHHHhccCce-eEeeccHHHH
Confidence 46667888888888888999999999998 5444444443
No 457
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=22.41 E-value=1.1e+02 Score=22.18 Aligned_cols=33 Identities=15% Similarity=0.021 Sum_probs=24.3
Q ss_pred cCCCeEEEEeCCCccHHHHHHHHHHCCccceee
Q 031788 93 KEEDRLVVGCQSGARSLHATADLLGAGFKHVSN 125 (153)
Q Consensus 93 ~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~ 125 (153)
+..+..+.+|+.......+.+.|.+.|++.-.+
T Consensus 190 ~~~~~~v~icGp~~m~~~~~~~l~~~G~~~~~i 222 (228)
T cd06209 190 NDGDVDVYLCGPPPMVDAVRSWLDEQGIEPANF 222 (228)
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHcCCCHHHE
Confidence 344556888987777788888999999974333
No 458
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=22.41 E-value=2.6e+02 Score=21.79 Aligned_cols=47 Identities=17% Similarity=0.323 Sum_probs=31.7
Q ss_pred HHHHHHHhh-c--c-CCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccH
Q 031788 83 DFLKKVRSL-C--K-EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGH 130 (153)
Q Consensus 83 ~~~~~~~~~-~--~-~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~ 130 (153)
-|...+.+. . + +++++++ .+.|+.+.-++..|.+.|..+++++.=..
T Consensus 110 G~~~~L~~~~~~~~~~~~~vli-lGAGGAarAv~~aL~~~g~~~i~V~NRt~ 160 (283)
T COG0169 110 GFLRALKEFGLPVDVTGKRVLI-LGAGGAARAVAFALAEAGAKRITVVNRTR 160 (283)
T ss_pred HHHHHHHhcCCCcccCCCEEEE-ECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 455555553 1 1 2344544 46777888899999999998888876643
No 459
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=22.28 E-value=1.6e+02 Score=21.28 Aligned_cols=25 Identities=12% Similarity=0.073 Sum_probs=11.0
Q ss_pred CeEEEEeCCCccHHHHHHHHHHCCc
Q 031788 96 DRLVVGCQSGARSLHATADLLGAGF 120 (153)
Q Consensus 96 ~~ivi~c~~g~~a~~~~~~L~~~G~ 120 (153)
+.+++...++.-...+++.|.+.|+
T Consensus 4 ~~ilItGas~~iG~~la~~l~~~g~ 28 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFAEEGA 28 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC
Confidence 3344443344444444444444444
No 460
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=22.21 E-value=1.7e+02 Score=22.03 Aligned_cols=6 Identities=17% Similarity=0.097 Sum_probs=3.1
Q ss_pred HHCCcc
Q 031788 116 LGAGFK 121 (153)
Q Consensus 116 ~~~G~~ 121 (153)
+.+|.+
T Consensus 52 k~lgv~ 57 (222)
T COG0603 52 KKLGVP 57 (222)
T ss_pred HHcCCC
Confidence 345655
No 461
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=22.20 E-value=1.5e+02 Score=25.64 Aligned_cols=32 Identities=28% Similarity=0.380 Sum_probs=25.1
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHCCccceeec
Q 031788 94 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNF 126 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l 126 (153)
.++.++|...+|..+..+++.|.+.|++ |..+
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~~-Vval 110 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGFR-VRAG 110 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCe-EEEE
Confidence 5566777777888889999999999986 5544
No 462
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=22.17 E-value=1.5e+02 Score=17.01 Aligned_cols=24 Identities=17% Similarity=0.093 Sum_probs=15.7
Q ss_pred EEEEeC-CCccHHHHHHHHHHCCcc
Q 031788 98 LVVGCQ-SGARSLHATADLLGAGFK 121 (153)
Q Consensus 98 ivi~c~-~g~~a~~~~~~L~~~G~~ 121 (153)
|.+|.. .+..+..+...|.+.|++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~ 26 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVD 26 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCc
Confidence 455554 556677777777777764
No 463
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=22.16 E-value=2.5e+02 Score=21.29 Aligned_cols=39 Identities=21% Similarity=0.106 Sum_probs=29.4
Q ss_pred ccCCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHHH
Q 031788 92 CKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMA 132 (153)
Q Consensus 92 ~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~ 132 (153)
+.++++++++ +.|.-+..+++.++.+|.. +......-+.
T Consensus 153 ~~~g~~vlV~-g~g~vg~~~~q~a~~~G~~-vi~~~~~~~~ 191 (319)
T cd08242 153 ITPGDKVAVL-GDGKLGLLIAQVLALTGPD-VVLVGRHSEK 191 (319)
T ss_pred CCCCCEEEEE-CCCHHHHHHHHHHHHcCCe-EEEEcCCHHH
Confidence 5678888888 4677778889999999988 7666654443
No 464
>PRK06172 short chain dehydrogenase; Provisional
Probab=22.12 E-value=1.6e+02 Score=21.48 Aligned_cols=24 Identities=21% Similarity=0.149 Sum_probs=10.2
Q ss_pred CCeEEEEeCCCccHHHHHHHHHHC
Q 031788 95 EDRLVVGCQSGARSLHATADLLGA 118 (153)
Q Consensus 95 ~~~ivi~c~~g~~a~~~~~~L~~~ 118 (153)
+.++++++.+..........+...
T Consensus 31 G~~v~~~~r~~~~~~~~~~~~~~~ 54 (253)
T PRK06172 31 GAKVVVADRDAAGGEETVALIREA 54 (253)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc
Confidence 444555554433333333344333
No 465
>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.
Probab=22.12 E-value=1.2e+02 Score=24.95 Aligned_cols=30 Identities=17% Similarity=0.188 Sum_probs=26.6
Q ss_pred ccCCCeEEEEeCCCccHHHHHHHHHHCCcc
Q 031788 92 CKEEDRLVVGCQSGARSLHATADLLGAGFK 121 (153)
Q Consensus 92 ~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~ 121 (153)
+.+++||++...++..+......|+..|++
T Consensus 109 ~~~d~Pv~l~~~~~H~~~~Ns~al~~~gi~ 138 (479)
T cd01300 109 VSPDRPVLLLRRDGHSAWVNSAALRLAGIT 138 (479)
T ss_pred ccCCCcEEEEccCchHHHHHHHHHHHcCCC
Confidence 468999999999999888899999999985
No 466
>PRK10456 arginine succinyltransferase; Provisional
Probab=21.99 E-value=1.3e+02 Score=24.22 Aligned_cols=82 Identities=16% Similarity=0.229 Sum_probs=49.5
Q ss_pred CeEEecCChhhhhcCCCC-----CcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEE----------eCCCccH
Q 031788 44 YGYLDVRTAEEFKEGHVD-----AAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVG----------CQSGARS 108 (153)
Q Consensus 44 ~~iIDvR~~~e~~~ghi~-----ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~----------c~~g~~a 108 (153)
.++-..|...+ +.|+=| |..+.++++.+.+......+..|+.++. |..||++- ..-...+
T Consensus 158 ~viAEmRG~~D-e~G~SPFWd~lg~hFF~mdF~eAD~Lsg~~~k~FIaeLM----P~~PIYv~LLp~eAq~vIG~vH~~t 232 (344)
T PRK10456 158 KVVAEMRGVID-EHGYSPFWQSLGKRFFSMDFSRADYLCGTGQKAFIAELM----PKHPIYTDFLSEEAQAVIGQVHPQT 232 (344)
T ss_pred hhheeccCccC-CCCCCccHHHhhccccCCCHHHHHHHhcCCCceeHHHHC----CCCCcccccCCHHHHHHhCCcCCCC
Confidence 56677777666 445544 4445666665443333333446777665 45555543 2334456
Q ss_pred HHHHHHHHHCCccc---eeeccccH
Q 031788 109 LHATADLLGAGFKH---VSNFGGGH 130 (153)
Q Consensus 109 ~~~~~~L~~~G~~~---v~~l~gG~ 130 (153)
..+.+.|.+-||.. |-+++||-
T Consensus 233 ~pA~~lLe~EGF~~~~yVDIFDgGP 257 (344)
T PRK10456 233 APARAVLEKEGFRYRNYIDIFDGGP 257 (344)
T ss_pred HHHHHHHHHcCCccCCceeccCCCc
Confidence 78888999999953 56788873
No 467
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=21.92 E-value=83 Score=22.74 Aligned_cols=32 Identities=16% Similarity=0.113 Sum_probs=21.6
Q ss_pred EEEEeC--CCccHHHHHHHHHHCCccceeeccccH
Q 031788 98 LVVGCQ--SGARSLHATADLLGAGFKHVSNFGGGH 130 (153)
Q Consensus 98 ivi~c~--~g~~a~~~~~~L~~~G~~~v~~l~gG~ 130 (153)
|-++.+ +|..+...++.+...|++ |..+.|-.
T Consensus 20 VR~ItN~SSG~~G~~lA~~~~~~Ga~-V~li~g~~ 53 (185)
T PF04127_consen 20 VRFITNRSSGKMGAALAEEAARRGAE-VTLIHGPS 53 (185)
T ss_dssp SEEEEES--SHHHHHHHHHHHHTT-E-EEEEE-TT
T ss_pred ceEecCCCcCHHHHHHHHHHHHCCCE-EEEEecCc
Confidence 444444 777888899999999987 77777753
No 468
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=21.90 E-value=1.3e+02 Score=18.80 Aligned_cols=28 Identities=18% Similarity=0.291 Sum_probs=12.0
Q ss_pred HHHHHHHCCccceeeccccHHHHHhCCCc
Q 031788 111 ATADLLGAGFKHVSNFGGGHMAWVQNGLK 139 (153)
Q Consensus 111 ~~~~L~~~G~~~v~~l~gG~~~w~~~g~~ 139 (153)
.++.|.++||+ ++.=.|-..-..+.|.+
T Consensus 5 ~a~~l~~lG~~-i~AT~gTa~~L~~~Gi~ 32 (95)
T PF02142_consen 5 LAKRLAELGFE-IYATEGTAKFLKEHGIE 32 (95)
T ss_dssp HHHHHHHTTSE-EEEEHHHHHHHHHTT--
T ss_pred HHHHHHHCCCE-EEEChHHHHHHHHcCCC
Confidence 44555555554 44443333334444554
No 469
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=21.87 E-value=1.4e+02 Score=21.47 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=25.3
Q ss_pred CCCeEEEEeC---CCccHHHHHHHHHHCCcccee
Q 031788 94 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVS 124 (153)
Q Consensus 94 ~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~v~ 124 (153)
++++|+++.+ +|.....+.+.|+..|-..++
T Consensus 96 ~gk~VliVDDIidTG~Tl~~~~~~l~~~g~~~v~ 129 (189)
T PLN02238 96 KGKHVLLVEDIVDTGNTLSALVAHLEAKGAASVS 129 (189)
T ss_pred CCCEEEEEecccchHHHHHHHHHHHHhCCCCEEE
Confidence 6889999977 666777888999999987654
No 470
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=21.85 E-value=2.5e+02 Score=21.96 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=18.3
Q ss_pred CeEEEEeCCCcc-HHHHHHHHHHCCcc
Q 031788 96 DRLVVGCQSGAR-SLHATADLLGAGFK 121 (153)
Q Consensus 96 ~~ivi~c~~g~~-a~~~~~~L~~~G~~ 121 (153)
+.++++|+.... ...+.-.|.++||+
T Consensus 253 ~~~~liCGPp~m~~~~~~~~le~Lg~~ 279 (286)
T KOG0534|consen 253 ETLVLICGPPPMINGAAQGNLEKLGYN 279 (286)
T ss_pred CeEEEEECCHHHHhHHHHHHHHhcCCC
Confidence 689999985443 33455667779986
No 471
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=21.82 E-value=1.7e+02 Score=23.34 Aligned_cols=50 Identities=18% Similarity=0.389 Sum_probs=33.7
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHHHHHh---CCCceecCC
Q 031788 94 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQ---NGLKVKARE 144 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~---~g~~~~~~~ 144 (153)
++++|.|+. -|.+...-+.-|++.|.+-+.-|..|-..|.. +|+.+.+-.
T Consensus 17 kgK~iaIIG-YGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~ 69 (338)
T COG0059 17 KGKKVAIIG-YGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVE 69 (338)
T ss_pred cCCeEEEEe-cChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHH
Confidence 677887773 33344444667889999966777777777875 577765433
No 472
>PRK05875 short chain dehydrogenase; Provisional
Probab=21.79 E-value=1.6e+02 Score=21.83 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=14.0
Q ss_pred CCeEEEEeCCCccHHHHHHHHHHCCc
Q 031788 95 EDRLVVGCQSGARSLHATADLLGAGF 120 (153)
Q Consensus 95 ~~~ivi~c~~g~~a~~~~~~L~~~G~ 120 (153)
+++++|...+|.-+..+++.|.+.|+
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G~ 32 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAGA 32 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC
Confidence 34455554455555555555655565
No 473
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=21.77 E-value=1.5e+02 Score=21.54 Aligned_cols=35 Identities=14% Similarity=0.144 Sum_probs=26.6
Q ss_pred CCeEEEEeCCCccHHHHHHHHHHCCccceeeccccH
Q 031788 95 EDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGH 130 (153)
Q Consensus 95 ~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~ 130 (153)
..+|. +++.|.-...++..|...|+.++.+++...
T Consensus 21 ~~~V~-IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 21 QATVA-ICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred CCcEE-EECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 34444 446677788899999999998898888773
No 474
>TIGR00088 trmD tRNA (guanine-N1)-methyltransferase. S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing N1-methylguanine.
Probab=21.73 E-value=1.8e+02 Score=22.05 Aligned_cols=36 Identities=11% Similarity=0.116 Sum_probs=16.1
Q ss_pred CCCeEEEEeC-CCccHHHHHHHHHHCCcc-ceeecccc
Q 031788 94 EEDRLVVGCQ-SGARSLHATADLLGAGFK-HVSNFGGG 129 (153)
Q Consensus 94 ~~~~ivi~c~-~g~~a~~~~~~L~~~G~~-~v~~l~gG 129 (153)
+.+.++++|+ -.+--+++.+.+...-+. .=|+|.||
T Consensus 101 ~~~~lillCGrYEGiDeRi~~~~vdeeiSIGDyVLtGG 138 (233)
T TIGR00088 101 QNEHLILICGRYEGFDERIIQLEVDEEISIGDFVLTGG 138 (233)
T ss_pred CCCCEEEEeccccCcHHHHHhccCcEEEeeccEEecCc
Confidence 3456677776 222334444433221111 01566666
No 475
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=21.67 E-value=2.4e+02 Score=22.58 Aligned_cols=40 Identities=8% Similarity=0.128 Sum_probs=28.3
Q ss_pred HHHHHHHhhccCCCeEEEEeCCCccHHHHHHHHHHCCccc
Q 031788 83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKH 122 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~ 122 (153)
++...+.++...+-.+|+++..+..+..+.+.+++.|+..
T Consensus 222 d~~~~l~~i~~~~~dvIil~~~~~~~~~il~qa~~~g~~~ 261 (410)
T cd06363 222 DYQQILKQINQTKVNVIVVFASRQPAEAFFNSVIQQNLTG 261 (410)
T ss_pred HHHHHHHHHhcCCCeEEEEEcChHHHHHHHHHHHhcCCCC
Confidence 6777777764445456666666667778888999999853
No 476
>PLN00016 RNA-binding protein; Provisional
Probab=21.66 E-value=1.3e+02 Score=23.86 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=25.0
Q ss_pred CeEEEE----eCCCccHHHHHHHHHHCCccceeeccc
Q 031788 96 DRLVVG----CQSGARSLHATADLLGAGFKHVSNFGG 128 (153)
Q Consensus 96 ~~ivi~----c~~g~~a~~~~~~L~~~G~~~v~~l~g 128 (153)
++|+|. ..+|..+..+++.|.+.|++ |..+.-
T Consensus 53 ~~VLVt~~~~GatG~iG~~lv~~L~~~G~~-V~~l~R 88 (378)
T PLN00016 53 KKVLIVNTNSGGHAFIGFYLAKELVKAGHE-VTLFTR 88 (378)
T ss_pred ceEEEEeccCCCceeEhHHHHHHHHHCCCE-EEEEec
Confidence 557777 77888899999999999986 665543
No 477
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=21.63 E-value=63 Score=25.40 Aligned_cols=71 Identities=21% Similarity=0.280 Sum_probs=41.6
Q ss_pred eEEecCChhhhhc-CCCC-------CcceeCccccccCCCCCCCChHHHHHHHhh-ccCCCeEEEEeCCCcc--------
Q 031788 45 GYLDVRTAEEFKE-GHVD-------AAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVGCQSGAR-------- 107 (153)
Q Consensus 45 ~iIDvR~~~e~~~-ghi~-------ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivi~c~~g~~-------- 107 (153)
..||-|+.+.|.. |.+. .| +-+|.. -.+.+..+ +.+.+-+++|.+.|..
T Consensus 160 MevDekPtE~YsDiGGldkQIqELvEA--iVLpmt------------h~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAc 225 (424)
T KOG0652|consen 160 MEVDEKPTEQYSDIGGLDKQIQELVEA--IVLPMT------------HKEKFENLGIRPPKGVLMYGPPGTGKTLMARAC 225 (424)
T ss_pred eeeccCCcccccccccHHHHHHHHHHH--hccccc------------cHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHH
Confidence 4567777777754 3332 33 445552 23344555 7788889999886632
Q ss_pred -HHHHHHHHHHCCccceeecccc
Q 031788 108 -SLHATADLLGAGFKHVSNFGGG 129 (153)
Q Consensus 108 -a~~~~~~L~~~G~~~v~~l~gG 129 (153)
++..+.+|+-.|=+-|..+.|.
T Consensus 226 AaqT~aTFLKLAgPQLVQMfIGd 248 (424)
T KOG0652|consen 226 AAQTNATFLKLAGPQLVQMFIGD 248 (424)
T ss_pred HHhccchHHHhcchHHHhhhhcc
Confidence 1223445777776666655553
No 478
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=21.60 E-value=1.3e+02 Score=20.63 Aligned_cols=12 Identities=8% Similarity=0.003 Sum_probs=6.0
Q ss_pred CCCeEEEEeCCC
Q 031788 94 EEDRLVVGCQSG 105 (153)
Q Consensus 94 ~~~~ivi~c~~g 105 (153)
.+.+|+.++++.
T Consensus 21 ~~~~V~~~~R~~ 32 (183)
T PF13460_consen 21 RGHEVTALVRSP 32 (183)
T ss_dssp TTSEEEEEESSG
T ss_pred CCCEEEEEecCc
Confidence 345555555543
No 479
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=21.57 E-value=2.3e+02 Score=24.64 Aligned_cols=50 Identities=20% Similarity=0.231 Sum_probs=39.4
Q ss_pred HHHHHHHhhccCCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHHHH
Q 031788 83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAW 133 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w 133 (153)
++..++.....++.++.+..=+...|.....+|.+.|+. |.+++..++..
T Consensus 434 DL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gik-v~YlHSdidTl 483 (663)
T COG0556 434 DLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIK-VRYLHSDIDTL 483 (663)
T ss_pred HHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCce-EEeeeccchHH
Confidence 677777776677777777765777789999999999988 88888877653
No 480
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=21.54 E-value=1.2e+02 Score=24.94 Aligned_cols=42 Identities=19% Similarity=0.150 Sum_probs=29.3
Q ss_pred cCCCeEEEEeCCCcc----------HHHHHHHHHHCCccceeeccccHHHHHh
Q 031788 93 KEEDRLVVGCQSGAR----------SLHATADLLGAGFKHVSNFGGGHMAWVQ 135 (153)
Q Consensus 93 ~~~~~ivi~c~~g~~----------a~~~~~~L~~~G~~~v~~l~gG~~~w~~ 135 (153)
..++++.+||+-... .-....+|+..|++ +.++.||+-++..
T Consensus 29 ~~~~~~~iy~G~dPT~~sLHlGhlv~l~~l~~lq~~G~~-~~~ligd~ta~ig 80 (410)
T PRK13354 29 KEGKPLTLYLGFDPTAPSLHIGHLVPLMKLKRFQDAGHR-PVILIGGFTGKIG 80 (410)
T ss_pred hcCCCcEEEEcccCCCCCcchhhHHHHHHHHHHHHcCCe-EEEEEcccccccC
Confidence 357889999883322 24556678889987 7888888777543
No 481
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=21.53 E-value=1.5e+02 Score=21.44 Aligned_cols=26 Identities=23% Similarity=0.107 Sum_probs=13.2
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHCC
Q 031788 94 EEDRLVVGCQSGARSLHATADLLGAG 119 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L~~~G 119 (153)
.+.++++.+++......+...+...+
T Consensus 24 ~g~~v~~~~r~~~~~~~~~~~~~~~~ 49 (255)
T TIGR01963 24 AGANVVVNDLGEAGAEAAAKVATDAG 49 (255)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcC
Confidence 45566666665444444444444433
No 482
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=21.51 E-value=3e+02 Score=22.94 Aligned_cols=33 Identities=9% Similarity=0.004 Sum_probs=25.6
Q ss_pred HHHHHHHHHCCccceeeccccHHHHHhCCCceec
Q 031788 109 LHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKA 142 (153)
Q Consensus 109 ~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~ 142 (153)
...|+++++.|. +|-++-..+-.|.++..++..
T Consensus 237 ~tiAEyfrd~G~-~Vll~~DslTr~A~A~REisl 269 (442)
T PRK08927 237 LAIAEYFRDQGK-DVLCLMDSVTRFAMAQREIGL 269 (442)
T ss_pred HHHHHHHHHCCC-cEEEEEeCcHHHHhhhhHHHH
Confidence 346888999996 588888899988888766653
No 483
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=21.51 E-value=2.1e+02 Score=19.82 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=13.9
Q ss_pred cCCCeEEEEeCCCccHHHHHHHH
Q 031788 93 KEEDRLVVGCQSGARSLHATADL 115 (153)
Q Consensus 93 ~~~~~ivi~c~~g~~a~~~~~~L 115 (153)
..+++||.||....+....|..|
T Consensus 65 ~~~k~iv~yts~d~~kRaNAA~L 87 (141)
T PF14671_consen 65 LKKKKIVHYTSSDPKKRANAAFL 87 (141)
T ss_dssp GTTSEEEEEE-S-HHHHHHHHHH
T ss_pred hcCCeEEEECCCChhHHHHHHHH
Confidence 36888999998766544444444
No 484
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=21.50 E-value=2.3e+02 Score=18.56 Aligned_cols=9 Identities=11% Similarity=0.124 Sum_probs=4.2
Q ss_pred HHHHHH-CCc
Q 031788 112 TADLLG-AGF 120 (153)
Q Consensus 112 ~~~L~~-~G~ 120 (153)
+.+|++ .|.
T Consensus 37 a~~L~~~~Gi 46 (115)
T cd01422 37 GLLIQEATGL 46 (115)
T ss_pred HHHHHHhhCC
Confidence 344444 454
No 485
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=21.46 E-value=2e+02 Score=22.33 Aligned_cols=40 Identities=8% Similarity=0.061 Sum_probs=29.5
Q ss_pred HHHHHHHhhccCCCeEEEEeCCCccHHHHHHHHHHCCccc
Q 031788 83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKH 122 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~ 122 (153)
+|...+.++...+-.+|+++..+..+..+.+.+++.|+..
T Consensus 187 d~~~~i~~l~~~~~d~v~~~~~~~~~~~~~~~~~~~G~~~ 226 (347)
T cd06340 187 DLTSEVLKLKAANPDAILPASYTNDAILLVRTMKEQRVEP 226 (347)
T ss_pred chHHHHHHHHhcCCCEEEEcccchhHHHHHHHHHHcCCCC
Confidence 6766666664445557777777777788899999999964
No 486
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=21.45 E-value=2.1e+02 Score=20.49 Aligned_cols=31 Identities=26% Similarity=0.259 Sum_probs=25.8
Q ss_pred ccCCCeEEEEeC---CCccHHHHHHHHHHCCccc
Q 031788 92 CKEEDRLVVGCQ---SGARSLHATADLLGAGFKH 122 (153)
Q Consensus 92 ~~~~~~ivi~c~---~g~~a~~~~~~L~~~G~~~ 122 (153)
+.++++++++++ +|+.+.-..+.+.++|.+-
T Consensus 113 l~~G~rVlIVDDllaTGgT~~a~~~Ll~~~ga~v 146 (179)
T COG0503 113 LKPGDRVLIVDDLLATGGTALALIELLEQAGAEV 146 (179)
T ss_pred CCCCCEEEEEecchhcChHHHHHHHHHHHCCCEE
Confidence 568999999998 7777777788889999874
No 487
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=21.44 E-value=2.6e+02 Score=20.42 Aligned_cols=31 Identities=10% Similarity=0.028 Sum_probs=18.8
Q ss_pred CCeEEEEeCCCccHHHHHHHHHHCCccceeec
Q 031788 95 EDRLVVGCQSGARSLHATADLLGAGFKHVSNF 126 (153)
Q Consensus 95 ~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l 126 (153)
++.++|...++.-...+++.|.+.|++ |..+
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~G~~-v~~~ 36 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAEGAR-VVIA 36 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCE-EEEE
Confidence 445555555666666777777777765 4443
No 488
>PRK15088 PTS system mannose-specific transporter subunits IIAB; Provisional
Probab=21.42 E-value=3.2e+02 Score=21.62 Aligned_cols=44 Identities=9% Similarity=0.150 Sum_probs=24.8
Q ss_pred HHHHHHHhh---ccCCCeEEEEeC-CCccHHHH-HHHHHHCCccceeeccc
Q 031788 83 DFLKKVRSL---CKEEDRLVVGCQ-SGARSLHA-TADLLGAGFKHVSNFGG 128 (153)
Q Consensus 83 ~~~~~~~~~---~~~~~~ivi~c~-~g~~a~~~-~~~L~~~G~~~v~~l~g 128 (153)
+|.+++.+. ++.++.+++.|+ -|+.-..+ ...+. .+.+++++.|
T Consensus 44 ~~~~~l~~~i~~~~~~d~vlILtDl~GGSP~N~a~~~~~--~~~~v~vItG 92 (322)
T PRK15088 44 TLIEKYNAQLAKLDTSKGVLFLVDTWGGSPFNAASRIVV--DKENYEVITG 92 (322)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHh--ccCCeEEEEc
Confidence 566665554 456677888888 44443333 33333 2456666655
No 489
>PF09861 DUF2088: Domain of unknown function (DUF2088); InterPro: IPR018657 This domain, found in various hypothetical proteins, has no known function. ; PDB: 2YJG_B.
Probab=21.40 E-value=2e+02 Score=21.16 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=17.6
Q ss_pred ccCCCeEEEEeCCCccH-------HHHHHHHHHCCc--cceeec
Q 031788 92 CKEEDRLVVGCQSGARS-------LHATADLLGAGF--KHVSNF 126 (153)
Q Consensus 92 ~~~~~~ivi~c~~g~~a-------~~~~~~L~~~G~--~~v~~l 126 (153)
..++++|++++++..|. ..+.+.|.+.|. +++.++
T Consensus 51 ~~~~~~V~Ivv~D~TRp~p~~~il~~ll~~L~~~Gv~~~~i~ii 94 (204)
T PF09861_consen 51 VKPGKRVAIVVDDITRPTPSDLILPALLEELEEAGVKDEDITII 94 (204)
T ss_dssp CTT-SEEEEEEE-TTS---HHHHHHHHHHHHHT-T-TT-EEEEE
T ss_pred hCCCCeEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCccCEEEE
Confidence 34567777777655442 234556677777 456655
No 490
>PRK10853 putative reductase; Provisional
Probab=21.36 E-value=1.3e+02 Score=19.88 Aligned_cols=24 Identities=13% Similarity=-0.042 Sum_probs=15.2
Q ss_pred EEEEeC-CCccHHHHHHHHHHCCcc
Q 031788 98 LVVGCQ-SGARSLHATADLLGAGFK 121 (153)
Q Consensus 98 ivi~c~-~g~~a~~~~~~L~~~G~~ 121 (153)
|.+|+. +|..+..|...|.+.|++
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~ 26 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGID 26 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCC
Confidence 345555 556666777777777764
No 491
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=21.30 E-value=1.7e+02 Score=21.34 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=12.2
Q ss_pred CCeEEEEeCCCccHHHHHHHHHHCCc
Q 031788 95 EDRLVVGCQSGARSLHATADLLGAGF 120 (153)
Q Consensus 95 ~~~ivi~c~~g~~a~~~~~~L~~~G~ 120 (153)
++.++|...++.-+..++..|.+.|+
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~G~ 36 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGAGA 36 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC
Confidence 34444444444444444555544554
No 492
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=21.28 E-value=1.3e+02 Score=19.82 Aligned_cols=30 Identities=13% Similarity=0.426 Sum_probs=23.9
Q ss_pred CcceeecHHHHHHHHhCC--CeEEecCChhhh
Q 031788 26 AEVITVDVRAAKNLLESG--YGYLDVRTAEEF 55 (153)
Q Consensus 26 ~~~~~i~~~~~~~~~~~~--~~iIDvR~~~e~ 55 (153)
.....||.+++.+++.++ ..|+|..+-++-
T Consensus 15 ~tS~YITLedi~~lV~~g~~f~V~DakTgeDi 46 (107)
T TIGR01848 15 ETSSYVTLEDIRDLVREGREFQVVDSKSGDDL 46 (107)
T ss_pred CccceeeHHHHHHHHHCCCeEEEEECCCCchh
Confidence 345679999999999765 789999986654
No 493
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=21.24 E-value=1.5e+02 Score=22.28 Aligned_cols=28 Identities=11% Similarity=0.042 Sum_probs=19.8
Q ss_pred EEEEeCCCccHHHHHHHHHHCCccceeec
Q 031788 98 LVVGCQSGARSLHATADLLGAGFKHVSNF 126 (153)
Q Consensus 98 ivi~c~~g~~a~~~~~~L~~~G~~~v~~l 126 (153)
|+|...+|.....+++.|.+.|++ |..+
T Consensus 2 ilVtGatG~iG~~vv~~L~~~g~~-V~~~ 29 (285)
T TIGR03649 2 ILLTGGTGKTASRIARLLQAASVP-FLVA 29 (285)
T ss_pred EEEEcCCChHHHHHHHHHHhCCCc-EEEE
Confidence 566667777777788888888875 5433
No 494
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=21.22 E-value=3.7e+02 Score=20.25 Aligned_cols=77 Identities=13% Similarity=0.032 Sum_probs=36.3
Q ss_pred CeEEecCC----hhhhhcCCCCCcceeCcccc---ccC-CCCCCCChHHHHHHHhhccCCCeEEEEeCCCc-cHHHHHHH
Q 031788 44 YGYLDVRT----AEEFKEGHVDAAKIFNIPYM---FNT-PEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGA-RSLHATAD 114 (153)
Q Consensus 44 ~~iIDvR~----~~e~~~ghi~ga~~i~ip~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~g~-~a~~~~~~ 114 (153)
++|+||-. ...|...|.-|. ..+.-. .|. ...-.+.+.-.+.+..+...+-.|++..+... .-....+.
T Consensus 79 A~V~DIDET~LsN~py~~~~~~g~--~~~~~~~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~n 156 (229)
T TIGR01675 79 AWIFDVDDTLLSNIPYYKKHGYGT--EKTDPTAFWLWLGKGAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDN 156 (229)
T ss_pred EEEEccccccccCHHHHHHhccCC--CcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHH
Confidence 78899973 344555555554 222211 111 11111222333333333344555555544222 12235678
Q ss_pred HHHCCccc
Q 031788 115 LLGAGFKH 122 (153)
Q Consensus 115 L~~~G~~~ 122 (153)
|.+.||+.
T Consensus 157 L~~~G~~~ 164 (229)
T TIGR01675 157 LINAGFTG 164 (229)
T ss_pred HHHcCCCC
Confidence 88999885
No 495
>PRK08265 short chain dehydrogenase; Provisional
Probab=21.22 E-value=1.7e+02 Score=21.56 Aligned_cols=31 Identities=16% Similarity=0.120 Sum_probs=18.2
Q ss_pred CCeEEEEeCCCccHHHHHHHHHHCCccceeec
Q 031788 95 EDRLVVGCQSGARSLHATADLLGAGFKHVSNF 126 (153)
Q Consensus 95 ~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l 126 (153)
++.++|...++.-...+++.|.+.|++ |..+
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~~-V~~~ 36 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGAR-VAIV 36 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCE-EEEE
Confidence 445555555556666667777777763 4433
No 496
>PRK08329 threonine synthase; Validated
Probab=21.21 E-value=3.2e+02 Score=21.66 Aligned_cols=65 Identities=22% Similarity=0.122 Sum_probs=37.1
Q ss_pred eCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccH
Q 031788 66 FNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGH 130 (153)
Q Consensus 66 i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~ 130 (153)
+.+-.+..+|.+.+++....-.+......+..-|+.+.+|+.+.-++.+....|++-+-++..+.
T Consensus 74 l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~~~vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~ 138 (347)
T PRK08329 74 VYFKLDYLQPTGSFKDRGTYVTVAKLKEEGINEVVIDSSGNAALSLALYSLSEGIKVHVFVSYNA 138 (347)
T ss_pred EEEEeCCCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCC
Confidence 33334444666666644333333333233444455566888888888888889987444554444
No 497
>PRK10026 arsenate reductase; Provisional
Probab=21.19 E-value=1.6e+02 Score=20.38 Aligned_cols=25 Identities=8% Similarity=0.085 Sum_probs=18.1
Q ss_pred eEEEEeC-CCccHHHHHHHHHHCCcc
Q 031788 97 RLVVGCQ-SGARSLHATADLLGAGFK 121 (153)
Q Consensus 97 ~ivi~c~-~g~~a~~~~~~L~~~G~~ 121 (153)
.|.+|.. +|..+..+...|.+.|++
T Consensus 3 ~i~iY~~p~Cst~RKA~~wL~~~gi~ 28 (141)
T PRK10026 3 NITIYHNPACGTSRNTLEMIRNSGTE 28 (141)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHCCCC
Confidence 3556665 677778888888888865
No 498
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=21.17 E-value=1.2e+02 Score=21.06 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=10.1
Q ss_pred CCCeEEEEeCCCccHHHHHHHH
Q 031788 94 EEDRLVVGCQSGARSLHATADL 115 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L 115 (153)
.+++|+++|.+...+..+.+.+
T Consensus 121 GdDTilii~~~~~~a~~~~~~l 142 (146)
T TIGR01529 121 GDDTILVICRDPETAELLMERL 142 (146)
T ss_pred cCCEEEEEECCHHHHHHHHHHH
Confidence 3444555554444444444443
No 499
>PLN02206 UDP-glucuronate decarboxylase
Probab=21.09 E-value=1.4e+02 Score=24.60 Aligned_cols=33 Identities=24% Similarity=0.204 Sum_probs=27.6
Q ss_pred CCCeEEEEeCCCccHHHHHHHHHHCCccceeecc
Q 031788 94 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFG 127 (153)
Q Consensus 94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~ 127 (153)
++++|+|...+|.-...+++.|.+.|++ |..++
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~~-V~~ld 150 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGDS-VIVVD 150 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcCE-EEEEe
Confidence 5678888888999999999999999986 66553
No 500
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=21.08 E-value=1.4e+02 Score=18.13 Aligned_cols=29 Identities=24% Similarity=0.195 Sum_probs=19.4
Q ss_pred CeEEEEeCCC----ccHHHHHHHHHHCCccceee
Q 031788 96 DRLVVGCQSG----ARSLHATADLLGAGFKHVSN 125 (153)
Q Consensus 96 ~~ivi~c~~g----~~a~~~~~~L~~~G~~~v~~ 125 (153)
+.+|+++-+- .+=..+++.|.+.||. |+.
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~-V~~ 48 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYA-VFA 48 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCE-EEE
Confidence 5677776522 2445778889999987 543
Done!