Query 031789
Match_columns 153
No_of_seqs 176 out of 1711
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 05:22:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031789.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031789hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3396 Glucosamine-phosphate 100.0 8.9E-30 1.9E-34 148.3 13.1 149 4-152 2-150 (150)
2 PLN02706 glucosamine 6-phospha 100.0 3.4E-26 7.3E-31 142.1 17.2 146 7-152 5-150 (150)
3 PTZ00330 acetyltransferase; Pr 99.9 4.5E-25 9.7E-30 136.6 15.8 143 5-150 3-145 (147)
4 PRK10146 aminoalkylphosphonic 99.9 1.5E-23 3.3E-28 129.3 12.9 138 7-150 2-142 (144)
5 PHA00673 acetyltransferase dom 99.9 6E-22 1.3E-26 121.0 13.3 132 13-148 11-148 (154)
6 TIGR02382 wecD_rffC TDP-D-fuco 99.9 3.3E-21 7.1E-26 124.1 15.0 136 7-151 42-190 (191)
7 KOG3216 Diamine acetyltransfer 99.9 8.4E-21 1.8E-25 113.3 14.2 140 7-150 2-150 (163)
8 PRK03624 putative acetyltransf 99.9 1.5E-20 3.2E-25 115.2 14.3 126 8-146 2-130 (140)
9 PRK10975 TDP-fucosamine acetyl 99.9 1.4E-20 3.1E-25 121.4 14.6 136 8-151 46-193 (194)
10 PRK07922 N-acetylglutamate syn 99.9 3.9E-20 8.4E-25 116.8 13.6 125 6-147 3-128 (169)
11 PF13527 Acetyltransf_9: Acety 99.8 8.1E-20 1.7E-24 110.4 12.9 126 10-144 1-127 (127)
12 PRK10140 putative acetyltransf 99.8 1E-19 2.2E-24 114.2 13.6 134 8-151 3-146 (162)
13 TIGR03827 GNAT_ablB putative b 99.8 6E-20 1.3E-24 123.8 13.3 135 5-150 112-249 (266)
14 PRK09491 rimI ribosomal-protei 99.8 3.3E-19 7.2E-24 110.2 13.5 126 9-151 2-130 (146)
15 PF13523 Acetyltransf_8: Acety 99.8 3.9E-19 8.5E-24 110.6 13.7 133 11-147 1-142 (152)
16 TIGR02406 ectoine_EctA L-2,4-d 99.8 2.1E-19 4.6E-24 112.2 12.5 126 11-147 1-129 (157)
17 PRK07757 acetyltransferase; Pr 99.8 3.1E-19 6.6E-24 111.1 13.0 121 9-146 2-122 (152)
18 COG1247 Sortase and related ac 99.8 1.4E-18 3E-23 107.7 14.8 135 9-149 2-146 (169)
19 KOG3139 N-acetyltransferase [G 99.8 1.1E-18 2.3E-23 105.4 13.1 96 54-153 55-153 (165)
20 PF13420 Acetyltransf_4: Acety 99.8 1.1E-18 2.3E-23 108.9 13.2 134 11-152 1-145 (155)
21 TIGR03103 trio_acet_GNAT GNAT- 99.8 1.1E-18 2.4E-23 127.5 15.1 136 6-148 80-219 (547)
22 PF00583 Acetyltransf_1: Acety 99.8 7.4E-19 1.6E-23 98.5 10.3 77 65-142 4-83 (83)
23 COG1246 ArgA N-acetylglutamate 99.8 2.6E-18 5.7E-23 103.7 11.9 119 10-146 2-123 (153)
24 TIGR01575 rimI ribosomal-prote 99.8 4E-18 8.6E-23 103.2 12.8 118 18-151 1-121 (131)
25 COG0456 RimI Acetyltransferase 99.8 4.8E-18 1E-22 108.1 13.4 140 6-152 9-160 (177)
26 PRK10809 ribosomal-protein-S5- 99.8 1E-17 2.2E-22 108.2 13.9 140 6-151 15-171 (194)
27 PRK12308 bifunctional arginino 99.8 3.5E-18 7.6E-23 126.6 12.5 122 6-147 461-585 (614)
28 PRK15130 spermidine N1-acetylt 99.8 1.9E-17 4.2E-22 106.2 14.1 136 7-151 5-150 (186)
29 PRK01346 hypothetical protein; 99.8 1.5E-17 3.3E-22 118.5 14.7 137 6-152 4-142 (411)
30 PRK10151 ribosomal-protein-L7/ 99.8 3.3E-17 7.2E-22 104.5 14.8 136 6-149 8-158 (179)
31 PF13508 Acetyltransf_7: Acety 99.8 6E-18 1.3E-22 94.0 9.5 77 55-143 3-79 (79)
32 PF13673 Acetyltransf_10: Acet 99.8 1.3E-18 2.7E-23 103.7 7.2 109 18-141 1-117 (117)
33 PRK09831 putative acyltransfer 99.8 2.6E-18 5.7E-23 106.3 8.0 118 9-148 1-128 (147)
34 PLN02825 amino-acid N-acetyltr 99.8 6.9E-18 1.5E-22 121.4 11.1 119 10-146 369-490 (515)
35 PF13302 Acetyltransf_3: Acety 99.8 6.2E-17 1.3E-21 99.4 14.0 128 9-142 2-142 (142)
36 PRK10514 putative acetyltransf 99.8 3.2E-17 7E-22 101.1 12.4 118 9-147 2-127 (145)
37 TIGR03585 PseH pseudaminic aci 99.8 3.4E-17 7.3E-22 102.2 12.3 131 10-150 2-142 (156)
38 COG3153 Predicted acetyltransf 99.8 1.7E-16 3.6E-21 98.7 14.5 131 7-147 2-132 (171)
39 TIGR03448 mycothiol_MshD mycot 99.8 1.5E-16 3.3E-21 108.7 15.4 137 6-149 147-291 (292)
40 TIGR01890 N-Ac-Glu-synth amino 99.7 4.2E-17 9.2E-22 116.6 12.0 123 9-146 283-405 (429)
41 PRK05279 N-acetylglutamate syn 99.7 2.7E-17 5.9E-22 118.0 10.7 120 9-146 295-417 (441)
42 TIGR01686 FkbH FkbH-like domai 99.7 1.3E-16 2.7E-21 110.3 12.9 127 5-144 183-319 (320)
43 PRK10314 putative acyltransfer 99.7 4.7E-17 1E-21 101.1 9.1 84 58-147 51-135 (153)
44 cd02169 Citrate_lyase_ligase C 99.7 7.8E-17 1.7E-21 109.3 10.2 79 54-145 5-83 (297)
45 PHA01807 hypothetical protein 99.7 5.2E-16 1.1E-20 95.9 11.8 121 13-139 8-136 (153)
46 PRK10562 putative acetyltransf 99.7 8.8E-16 1.9E-20 94.8 11.9 117 11-147 2-126 (145)
47 TIGR03448 mycothiol_MshD mycot 99.7 2.1E-15 4.5E-20 103.2 11.4 123 13-151 5-133 (292)
48 TIGR00124 cit_ly_ligase [citra 99.6 5.7E-15 1.2E-19 101.7 10.7 81 55-148 31-111 (332)
49 KOG3235 Subunit of the major N 99.6 3.9E-15 8.4E-20 89.7 8.3 135 9-152 2-141 (193)
50 COG3393 Predicted acetyltransf 99.6 1.7E-14 3.7E-19 94.2 10.9 130 7-151 132-267 (268)
51 PRK13688 hypothetical protein; 99.6 3.2E-14 6.9E-19 88.4 10.5 87 54-147 44-134 (156)
52 PF08445 FR47: FR47-like prote 99.5 3.8E-13 8.2E-18 75.5 8.2 58 88-146 22-82 (86)
53 COG1670 RimL Acetyltransferase 99.5 2.7E-12 5.8E-17 82.0 13.1 140 6-149 7-161 (187)
54 KOG2488 Acetyltransferase (GNA 99.5 1E-12 2.2E-17 81.7 10.5 90 54-147 91-183 (202)
55 COG3981 Predicted acetyltransf 99.5 2E-12 4.3E-17 79.4 10.7 133 8-146 3-159 (174)
56 KOG3138 Predicted N-acetyltran 99.5 2.8E-13 6.2E-18 85.3 7.1 134 9-152 17-158 (187)
57 TIGR01211 ELP3 histone acetylt 99.5 1.1E-12 2.3E-17 95.2 10.9 87 65-151 422-521 (522)
58 KOG3234 Acetyltransferase, (GN 99.4 7.8E-13 1.7E-17 79.8 7.8 92 57-152 43-137 (173)
59 KOG3397 Acetyltransferases [Ge 99.4 2.3E-12 5.1E-17 79.0 8.9 84 57-145 57-140 (225)
60 COG2153 ElaA Predicted acyltra 99.4 6.7E-12 1.4E-16 74.9 7.8 88 54-147 49-137 (155)
61 PF12746 GNAT_acetyltran: GNAT 99.3 2.6E-11 5.6E-16 81.0 9.1 80 66-152 174-253 (265)
62 KOG4144 Arylalkylamine N-acety 99.3 4.2E-12 9.2E-17 76.4 3.7 139 4-146 7-161 (190)
63 cd04301 NAT_SF N-Acyltransfera 99.2 1.8E-10 3.8E-15 60.5 7.8 57 66-126 8-64 (65)
64 PF13718 GNAT_acetyltr_2: GNAT 99.2 5.5E-10 1.2E-14 71.3 9.7 92 54-147 26-177 (196)
65 KOG4135 Predicted phosphogluco 99.1 1.6E-08 3.5E-13 60.8 12.9 139 7-146 12-170 (185)
66 PF14542 Acetyltransf_CG: GCN5 99.1 3.2E-09 7E-14 58.3 8.9 51 66-123 8-58 (78)
67 PF12568 DUF3749: Acetyltransf 98.9 7.5E-08 1.6E-12 56.9 11.5 116 9-145 2-124 (128)
68 PF08444 Gly_acyl_tr_C: Aralky 98.9 3.3E-09 7.2E-14 58.8 5.4 70 65-145 7-79 (89)
69 COG4552 Eis Predicted acetyltr 98.9 5.1E-09 1.1E-13 71.5 6.9 80 66-147 48-128 (389)
70 COG3053 CitC Citrate lyase syn 98.9 2.9E-08 6.3E-13 66.3 8.7 71 65-146 45-115 (352)
71 PF04958 AstA: Arginine N-succ 98.8 5.3E-07 1.1E-11 62.3 14.0 136 8-144 1-186 (342)
72 COG3818 Predicted acetyltransf 98.8 6.2E-08 1.3E-12 57.1 8.0 131 5-147 4-149 (167)
73 COG2388 Predicted acetyltransf 98.7 1.1E-07 2.4E-12 54.2 7.1 65 54-126 14-78 (99)
74 PRK10456 arginine succinyltran 98.7 7.3E-07 1.6E-11 61.5 11.9 135 9-144 2-184 (344)
75 TIGR03243 arg_catab_AOST argin 98.7 6.6E-07 1.4E-11 61.5 11.0 134 11-145 2-183 (335)
76 COG1444 Predicted P-loop ATPas 98.6 1.9E-08 4.1E-13 75.6 2.8 62 86-148 530-593 (758)
77 TIGR03245 arg_AOST_alph argini 98.6 1.8E-06 3.8E-11 59.5 11.7 134 11-145 2-184 (336)
78 PF06852 DUF1248: Protein of u 98.6 2.7E-06 5.8E-11 53.9 10.7 91 55-146 45-137 (181)
79 TIGR03244 arg_catab_AstA argin 98.5 3.5E-06 7.7E-11 58.1 11.0 134 11-145 2-183 (336)
80 PF02799 NMT_C: Myristoyl-CoA: 98.5 3.3E-05 7.2E-10 49.2 14.1 133 10-152 30-171 (190)
81 PF13480 Acetyltransf_6: Acety 98.4 1.8E-05 3.9E-10 48.2 11.7 110 9-129 20-136 (142)
82 COG0454 WecD Histone acetyltra 98.3 7E-07 1.5E-11 52.3 3.2 44 93-141 87-130 (156)
83 COG3882 FkbH Predicted enzyme 98.3 8.3E-06 1.8E-10 58.5 8.2 129 5-146 410-550 (574)
84 TIGR03694 exosort_acyl putativ 98.3 1.6E-05 3.4E-10 53.2 9.1 80 65-144 65-196 (241)
85 PF00765 Autoind_synth: Autoin 98.2 2.2E-05 4.8E-10 50.2 8.8 89 55-145 45-154 (182)
86 PRK13834 putative autoinducer 98.2 6E-05 1.3E-09 49.3 10.1 80 65-144 62-163 (207)
87 PF01233 NMT: Myristoyl-CoA:pr 98.1 0.00039 8.5E-09 43.0 12.5 121 5-128 20-151 (162)
88 COG1243 ELP3 Histone acetyltra 98.0 1.1E-05 2.3E-10 57.6 4.3 56 96-151 459-514 (515)
89 COG3375 Uncharacterized conser 98.0 0.00029 6.2E-09 45.8 10.1 117 8-132 2-119 (266)
90 PF13880 Acetyltransf_13: ESCO 97.9 1.6E-05 3.4E-10 42.3 3.5 30 87-116 5-34 (70)
91 KOG2779 N-myristoyl transferas 97.9 0.00026 5.6E-09 49.0 9.9 135 9-152 261-403 (421)
92 COG5628 Predicted acetyltransf 97.9 0.00011 2.5E-09 42.9 7.0 72 66-141 46-118 (143)
93 COG3138 AstA Arginine/ornithin 97.8 0.00026 5.7E-09 47.6 8.2 101 9-110 2-142 (336)
94 COG3916 LasI N-acyl-L-homoseri 97.7 0.00079 1.7E-08 43.4 9.4 81 65-145 61-162 (209)
95 TIGR03019 pepcterm_femAB FemAB 97.7 0.0031 6.7E-08 44.3 13.1 130 8-152 151-287 (330)
96 PF05301 Mec-17: Touch recepto 97.7 0.00083 1.8E-08 39.5 8.0 61 55-115 4-74 (120)
97 PRK14852 hypothetical protein; 97.6 0.00039 8.5E-09 54.6 7.5 137 8-148 28-183 (989)
98 PF01853 MOZ_SAS: MOZ/SAS fami 97.3 0.0028 6.1E-08 40.5 7.5 49 66-120 65-113 (188)
99 KOG2535 RNA polymerase II elon 97.3 0.00042 9E-09 48.2 3.9 53 98-150 498-551 (554)
100 KOG2036 Predicted P-loop ATPas 97.2 0.0011 2.4E-08 50.2 5.3 33 87-119 614-646 (1011)
101 PRK01305 arginyl-tRNA-protein 97.0 0.045 9.7E-07 36.7 14.0 58 65-129 152-209 (240)
102 cd04264 DUF619-NAGS DUF619 dom 97.0 0.0084 1.8E-07 34.4 6.9 58 66-132 17-74 (99)
103 PF04377 ATE_C: Arginine-tRNA- 96.9 0.033 7.2E-07 33.6 10.7 58 65-129 47-104 (128)
104 KOG2779 N-myristoyl transferas 96.9 0.042 9.2E-07 38.6 10.4 116 5-122 77-202 (421)
105 PLN03238 probable histone acet 96.8 0.0066 1.4E-07 41.3 6.5 50 65-120 139-188 (290)
106 cd04265 DUF619-NAGS-U DUF619 d 96.7 0.017 3.7E-07 33.2 6.5 43 85-132 32-74 (99)
107 PF04768 DUF619: Protein of un 96.3 0.12 2.5E-06 32.9 9.3 111 18-147 33-147 (170)
108 COG2401 ABC-type ATPase fused 96.3 0.0027 5.8E-08 45.7 1.9 59 87-145 241-307 (593)
109 PLN03239 histone acetyltransfe 96.3 0.019 4.1E-07 40.3 5.9 50 65-120 197-246 (351)
110 KOG4601 Uncharacterized conser 96.3 0.035 7.6E-07 36.6 6.7 49 66-114 81-135 (264)
111 PTZ00064 histone acetyltransfe 96.2 0.017 3.6E-07 42.3 5.6 50 65-120 368-417 (552)
112 TIGR03827 GNAT_ablB putative b 96.1 0.012 2.5E-07 40.2 4.3 49 103-151 21-69 (266)
113 COG5092 NMT1 N-myristoyl trans 96.0 0.073 1.6E-06 36.9 7.5 142 9-152 259-420 (451)
114 PHA00432 internal virion prote 95.9 0.032 7E-07 33.8 5.2 77 57-146 39-121 (137)
115 PLN00104 MYST -like histone ac 95.8 0.017 3.7E-07 41.9 4.2 50 65-120 290-339 (450)
116 PF13444 Acetyltransf_5: Acety 95.7 0.059 1.3E-06 31.0 5.6 53 56-109 31-100 (101)
117 KOG2696 Histone acetyltransfer 95.6 0.037 8E-07 39.0 5.1 46 86-132 216-261 (403)
118 KOG3698 Hyaluronoglucosaminida 95.6 0.088 1.9E-06 39.5 7.1 53 95-147 824-879 (891)
119 KOG2747 Histone acetyltransfer 95.1 0.057 1.2E-06 38.6 4.9 33 88-120 261-293 (396)
120 PF09924 DUF2156: Uncharacteri 95.1 0.22 4.8E-06 34.6 7.8 110 9-128 133-246 (299)
121 PHA01733 hypothetical protein 94.4 0.01 2.2E-07 36.6 -0.1 73 66-146 56-132 (153)
122 PF11124 Pho86: Inorganic phos 93.7 0.69 1.5E-05 32.1 7.4 80 66-145 178-270 (304)
123 PF09390 DUF1999: Protein of u 93.5 1.1 2.3E-05 27.6 8.3 87 54-145 54-140 (161)
124 cd04266 DUF619-NAGS-FABP DUF61 93.3 0.97 2.1E-05 26.5 8.0 54 85-143 37-96 (108)
125 PF02474 NodA: Nodulation prot 92.0 0.28 6E-06 31.1 3.4 54 86-140 84-137 (196)
126 COG2935 Putative arginyl-tRNA: 91.3 2.2 4.8E-05 28.8 7.2 58 65-129 159-216 (253)
127 COG2898 Uncharacterized conser 90.3 3.8 8.1E-05 31.2 8.3 66 57-130 395-460 (538)
128 COG5092 NMT1 N-myristoyl trans 90.1 5.1 0.00011 28.2 8.3 112 10-123 83-201 (451)
129 PF04339 DUF482: Protein of un 89.5 6.3 0.00014 28.6 12.4 130 7-152 198-335 (370)
130 PRK02983 lysS lysyl-tRNA synth 89.4 4.9 0.00011 33.5 9.0 66 57-130 422-487 (1094)
131 COG5027 SAS2 Histone acetyltra 88.5 0.42 9E-06 33.7 2.3 30 88-117 263-292 (395)
132 COG5630 ARG2 Acetylglutamate s 87.7 6.9 0.00015 28.4 7.8 49 66-117 382-431 (495)
133 PRK04531 acetylglutamate kinas 87.1 10 0.00022 27.9 9.2 56 85-145 308-367 (398)
134 PF12261 T_hemolysin: Thermost 85.4 1.8 3.9E-05 27.9 3.8 77 65-145 43-141 (179)
135 PHA02769 hypothetical protein; 81.8 2.2 4.8E-05 25.1 2.8 42 105-146 94-139 (154)
136 COG5653 Protein involved in ce 81.7 18 0.00039 26.5 9.3 87 35-131 253-339 (406)
137 PF07395 Mig-14: Mig-14; Inte 79.9 17 0.00037 25.1 7.2 102 10-122 128-239 (264)
138 PF11039 DUF2824: Protein of u 79.6 11 0.00025 22.9 8.2 76 66-150 47-126 (151)
139 KOG3014 Protein involved in es 79.2 3.2 7E-05 28.0 3.3 32 86-117 182-213 (257)
140 PF09924 DUF2156: Uncharacteri 75.4 25 0.00054 24.5 7.0 48 105-152 57-104 (299)
141 PRK00756 acyltransferase NodA; 74.9 6.1 0.00013 25.1 3.4 55 86-142 84-142 (196)
142 cd03173 DUF619-like DUF619 dom 72.3 16 0.00035 21.0 7.5 43 85-132 31-73 (98)
143 PF11090 DUF2833: Protein of u 72.1 13 0.00028 20.8 4.0 25 121-145 56-83 (86)
144 PF04816 DUF633: Family of unk 69.9 8.3 0.00018 25.4 3.5 47 102-148 73-124 (205)
145 PF02388 FemAB: FemAB family; 69.7 28 0.00061 25.6 6.4 79 65-148 44-142 (406)
146 TIGR00667 aat leucyl/phenylala 68.0 31 0.00066 22.5 11.2 113 16-146 61-173 (185)
147 PF08901 DUF1847: Protein of u 67.5 6.7 0.00015 24.6 2.5 38 109-146 43-87 (157)
148 KOG1472 Histone acetyltransfer 66.8 2.6 5.7E-05 33.0 0.8 72 68-144 431-503 (720)
149 COG2384 Predicted SAM-dependen 61.1 19 0.00041 24.2 3.8 46 102-147 92-142 (226)
150 PRK15312 antimicrobial resista 60.9 56 0.0012 23.0 6.8 102 10-122 156-269 (298)
151 PF02388 FemAB: FemAB family; 59.6 69 0.0015 23.7 7.3 56 66-128 302-357 (406)
152 PF13862 BCIP: p21-C-terminal 58.5 49 0.0011 21.7 9.2 64 7-75 5-69 (194)
153 TIGR00377 ant_ant_sig anti-ant 58.5 14 0.00031 21.0 2.7 38 106-143 61-98 (108)
154 PRK14837 undecaprenyl pyrophos 55.6 18 0.0004 24.4 3.1 36 97-132 27-63 (230)
155 cd07042 STAS_SulP_like_sulfate 53.8 22 0.00048 19.9 3.1 43 105-147 58-100 (107)
156 PF04555 XhoI: Restriction end 53.6 61 0.0013 21.2 5.0 38 92-129 144-181 (196)
157 TIGR00055 uppS undecaprenyl di 53.5 21 0.00045 24.1 3.1 36 97-132 20-56 (226)
158 PRK05031 tRNA (uracil-5-)-meth 53.0 27 0.00058 25.3 3.9 49 91-147 290-342 (362)
159 PF12017 Tnp_P_element: Transp 52.7 35 0.00076 23.2 4.1 41 103-143 192-234 (236)
160 cd06844 STAS Sulphate Transpor 52.4 24 0.00053 19.9 3.0 39 105-143 56-94 (100)
161 COG2898 Uncharacterized conser 51.1 48 0.001 25.6 4.9 47 105-151 271-317 (538)
162 COG0375 HybF Zn finger protein 50.5 30 0.00064 20.6 3.1 22 103-124 5-26 (115)
163 PF01255 Prenyltransf: Putativ 50.4 19 0.00041 24.1 2.6 35 98-132 16-51 (223)
164 TIGR02886 spore_II_AA anti-sig 49.9 37 0.00081 19.2 3.6 38 107-144 58-95 (106)
165 PRK02983 lysS lysyl-tRNA synth 48.7 36 0.00077 28.8 4.3 45 106-150 298-342 (1094)
166 cd07043 STAS_anti-anti-sigma_f 48.4 33 0.00072 18.8 3.2 39 105-143 55-93 (99)
167 PF10887 DUF2686: Protein of u 48.0 84 0.0018 21.2 5.3 24 122-145 220-243 (276)
168 cd00475 CIS_IPPS Cis (Z)-Isopr 47.3 29 0.00062 23.3 3.0 36 97-132 21-57 (221)
169 PRK03681 hypA hydrogenase nick 47.2 34 0.00074 20.2 3.1 22 103-124 5-26 (114)
170 PF03376 Adeno_E3B: Adenovirus 47.0 9.4 0.0002 20.0 0.6 14 95-108 52-65 (67)
171 PRK14841 undecaprenyl pyrophos 46.7 28 0.00062 23.5 3.0 36 97-132 24-60 (233)
172 PF01751 Toprim: Toprim domain 45.7 23 0.0005 20.1 2.2 34 92-126 64-97 (100)
173 PRK14832 undecaprenyl pyrophos 45.3 27 0.00059 24.0 2.8 36 97-132 39-75 (253)
174 COG2231 Uncharacterized protei 45.2 9.6 0.00021 25.2 0.6 40 102-145 121-160 (215)
175 TIGR02990 ectoine_eutA ectoine 45.0 32 0.00069 23.3 3.1 41 106-146 105-151 (239)
176 COG3640 CooC CO dehydrogenase 44.9 54 0.0012 22.5 4.0 40 103-143 10-51 (255)
177 PRK14842 undecaprenyl pyrophos 44.7 34 0.00073 23.3 3.1 36 97-132 29-65 (241)
178 PRK10240 undecaprenyl pyrophos 44.6 29 0.00064 23.4 2.8 36 97-132 14-50 (229)
179 PTZ00349 dehydrodolichyl dipho 44.5 30 0.00065 24.7 2.9 36 97-132 40-76 (322)
180 PRK14834 undecaprenyl pyrophos 44.1 46 0.001 22.8 3.7 36 97-132 35-71 (249)
181 COG3543 Uncharacterized conser 43.5 59 0.0013 19.8 3.6 38 95-132 12-50 (135)
182 PRK14840 undecaprenyl pyrophos 42.9 32 0.0007 23.6 2.8 36 97-132 43-79 (250)
183 PRK14831 undecaprenyl pyrophos 42.7 36 0.00077 23.4 3.0 36 97-132 41-77 (249)
184 COG1212 KdsB CMP-2-keto-3-deox 42.4 41 0.00089 22.8 3.1 42 105-146 27-69 (247)
185 PF12953 DUF3842: Domain of un 42.1 24 0.00052 21.5 1.9 42 98-140 6-47 (131)
186 PHA02126 hypothetical protein 41.9 57 0.0012 19.5 3.3 33 120-152 94-131 (153)
187 PF01740 STAS: STAS domain; I 41.8 31 0.00067 20.0 2.4 40 105-144 65-104 (117)
188 PRK14833 undecaprenyl pyrophos 41.7 39 0.00084 22.9 3.0 36 97-132 25-61 (233)
189 TIGR00100 hypA hydrogenase nic 41.4 47 0.001 19.7 3.1 26 103-128 5-33 (115)
190 PRK14829 undecaprenyl pyrophos 41.2 38 0.00083 23.1 3.0 36 97-132 35-71 (243)
191 PF00571 CBS: CBS domain CBS d 41.2 33 0.00071 16.6 2.2 18 55-74 31-48 (57)
192 PRK00762 hypA hydrogenase nick 40.5 50 0.0011 19.9 3.1 23 103-125 5-27 (124)
193 PRK14839 undecaprenyl pyrophos 40.0 39 0.00085 23.0 2.8 36 97-132 30-66 (239)
194 COG1658 Small primase-like pro 39.9 26 0.00057 21.3 1.8 22 93-114 60-81 (127)
195 PRK12380 hydrogenase nickel in 39.6 53 0.0011 19.4 3.1 26 103-128 5-33 (113)
196 PF02268 TFIIA_gamma_N: Transc 38.8 53 0.0012 16.3 2.5 23 97-119 4-26 (49)
197 PRK14828 undecaprenyl pyrophos 38.5 52 0.0011 22.7 3.3 36 97-132 47-84 (256)
198 PRK14835 undecaprenyl pyrophos 38.4 46 0.001 23.2 3.1 36 97-132 62-98 (275)
199 cd01027 TOPRIM_RNase_M5_like T 38.3 22 0.00047 19.6 1.3 22 92-113 49-70 (81)
200 PF13466 STAS_2: STAS domain 37.2 61 0.0013 17.2 3.0 38 104-141 42-79 (80)
201 PRK14838 undecaprenyl pyrophos 36.8 46 0.001 22.7 2.8 36 97-132 31-67 (242)
202 PF02794 HlyC: RTX toxin acylt 36.6 1E+02 0.0022 18.9 5.2 85 23-117 6-105 (133)
203 PF14871 GHL6: Hypothetical gl 36.5 83 0.0018 19.2 3.7 24 101-124 38-61 (132)
204 PF09907 DUF2136: Uncharacteri 35.8 77 0.0017 17.3 5.3 68 23-100 6-73 (76)
205 cd04197 eIF-2B_epsilon_N The N 35.7 41 0.00089 22.1 2.5 28 105-132 30-57 (217)
206 PF01155 HypA: Hydrogenase exp 35.5 52 0.0011 19.4 2.6 22 103-124 5-26 (113)
207 cd07041 STAS_RsbR_RsbS_like Su 35.1 72 0.0016 18.2 3.2 38 106-143 59-96 (109)
208 PF12804 NTP_transf_3: MobA-li 35.0 30 0.00065 21.2 1.7 40 105-144 23-63 (160)
209 PRK14827 undecaprenyl pyrophos 34.6 51 0.0011 23.3 2.8 36 97-132 88-124 (296)
210 PF06849 DUF1246: Protein of u 34.2 52 0.0011 19.9 2.4 32 111-143 11-42 (124)
211 PF03588 Leu_Phe_trans: Leucyl 34.2 1.3E+02 0.0028 19.4 12.5 111 15-144 58-171 (173)
212 KOG3112 Uncharacterized conser 34.2 1.2E+02 0.0026 20.4 4.2 28 103-130 96-123 (262)
213 COG1041 Predicted DNA modifica 34.2 1.9E+02 0.004 21.2 6.4 61 89-149 264-331 (347)
214 COG0623 FabI Enoyl-[acyl-carri 34.1 87 0.0019 21.5 3.7 41 88-128 144-185 (259)
215 KOG4387 Ornithine decarboxylas 34.0 1.4E+02 0.0029 19.5 5.1 54 93-146 105-165 (191)
216 COG2266 GTP:adenosylcobinamide 34.0 84 0.0018 20.4 3.5 45 104-149 25-72 (177)
217 COG2265 TrmA SAM-dependent met 33.9 64 0.0014 24.2 3.4 52 91-147 364-419 (432)
218 PF06559 DCD: 2'-deoxycytidine 33.6 32 0.00069 24.8 1.7 39 57-104 318-356 (364)
219 PRK00564 hypA hydrogenase nick 33.5 74 0.0016 18.9 3.1 22 103-124 5-26 (117)
220 COG2994 HlyC ACP:hemolysin acy 31.9 1.3E+02 0.0028 18.7 5.1 40 33-76 33-72 (148)
221 PF02638 DUF187: Glycosyl hydr 31.9 1.4E+02 0.003 21.2 4.7 34 105-138 17-50 (311)
222 COG1064 AdhP Zn-dependent alco 31.8 72 0.0016 23.1 3.2 41 103-144 174-214 (339)
223 TIGR03884 sel_bind_Methan sele 31.6 93 0.002 16.9 3.0 22 105-126 27-48 (74)
224 PRK07758 hypothetical protein; 31.3 67 0.0014 18.4 2.4 21 102-122 73-93 (95)
225 PF12294 DUF3626: Protein of u 31.0 21 0.00045 25.0 0.5 22 90-111 191-212 (297)
226 COG3473 Maleate cis-trans isom 30.5 1E+02 0.0022 20.7 3.5 31 116-146 113-149 (238)
227 PRK14830 undecaprenyl pyrophos 30.3 80 0.0017 21.7 3.2 30 99-128 45-74 (251)
228 cd04263 DUF619-NAGK-FABP DUF61 30.2 1.2E+02 0.0025 17.6 8.4 43 85-132 31-73 (98)
229 PF04339 DUF482: Protein of un 29.8 2.3E+02 0.005 20.9 11.5 55 92-146 105-160 (370)
230 COG0655 WrbA Multimeric flavod 29.1 1.7E+02 0.0037 19.2 5.0 38 95-132 6-43 (207)
231 PF08348 PAS_6: YheO-like PAS 29.0 1.3E+02 0.0029 17.9 3.9 19 57-76 86-104 (118)
232 cd06422 NTP_transferase_like_1 28.8 59 0.0013 21.3 2.4 28 105-132 29-56 (221)
233 PF04015 DUF362: Domain of unk 28.5 1.3E+02 0.0029 19.6 3.9 45 102-146 18-67 (206)
234 cd04181 NTP_transferase NTP_tr 27.4 90 0.002 20.1 3.1 28 105-132 28-55 (217)
235 PF07637 PSD5: Protein of unkn 27.2 36 0.00078 17.7 0.9 40 12-52 17-56 (64)
236 COG2185 Sbm Methylmalonyl-CoA 27.0 1.7E+02 0.0036 18.3 4.2 42 103-144 74-119 (143)
237 PRK10340 ebgA cryptic beta-D-g 26.4 4.1E+02 0.009 22.7 8.7 62 85-146 331-397 (1021)
238 cd04641 CBS_pair_28 The CBS do 26.2 1.3E+02 0.0029 17.0 3.6 28 44-74 87-114 (120)
239 PRK10122 GalU regulator GalF; 26.1 69 0.0015 22.5 2.4 28 105-132 33-60 (297)
240 PRK10150 beta-D-glucuronidase; 26.0 3.3E+02 0.0071 21.4 8.0 61 85-145 289-354 (604)
241 KOG1198 Zinc-binding oxidoredu 25.8 1.3E+02 0.0028 21.8 3.7 39 105-143 167-205 (347)
242 PF02334 RTP: Replication term 25.7 24 0.00052 20.8 0.1 22 99-120 28-49 (122)
243 PRK03824 hypA hydrogenase nick 25.6 69 0.0015 19.6 2.1 22 103-124 5-26 (135)
244 KOG0538 Glycolate oxidase [Ene 25.5 2.4E+02 0.0051 20.4 4.7 35 89-130 123-157 (363)
245 TIGR01099 galU UTP-glucose-1-p 25.2 84 0.0018 21.2 2.6 29 105-133 30-58 (260)
246 cd02508 ADP_Glucose_PP ADP-glu 25.1 75 0.0016 20.5 2.3 29 105-133 28-57 (200)
247 PF11633 SUD-M: Single-strande 25.0 45 0.00098 20.5 1.1 36 109-144 25-60 (142)
248 COG0529 CysC Adenylylsulfate k 24.7 82 0.0018 20.7 2.3 44 103-146 33-77 (197)
249 cd02541 UGPase_prokaryotic Pro 24.7 85 0.0018 21.3 2.6 28 105-132 30-57 (267)
250 cd04619 CBS_pair_6 The CBS dom 24.6 1.4E+02 0.0031 16.7 3.4 32 41-75 78-109 (114)
251 COG3010 NanE Putative N-acetyl 24.5 1.6E+02 0.0035 19.8 3.6 59 91-152 100-159 (229)
252 cd04189 G1P_TT_long G1P_TT_lon 24.3 1.3E+02 0.0028 19.8 3.4 28 105-132 30-57 (236)
253 PF01910 DUF77: Domain of unkn 23.6 1.5E+02 0.0033 16.7 3.3 22 107-128 51-72 (92)
254 PRK14836 undecaprenyl pyrophos 23.5 74 0.0016 21.9 2.1 36 97-132 35-71 (253)
255 KOG4518 Hydroxypyruvate isomer 23.4 1.6E+02 0.0035 19.7 3.4 26 103-128 82-107 (264)
256 PF04260 DUF436: Protein of un 23.4 2.2E+02 0.0047 18.4 3.9 44 103-146 43-92 (172)
257 PF01697 Glyco_transf_92: Glyc 23.3 2.5E+02 0.0054 19.1 6.1 55 92-147 4-64 (285)
258 PRK04017 hypothetical protein; 23.3 78 0.0017 19.4 1.9 23 92-114 69-91 (132)
259 KOG1201 Hydroxysteroid 17-beta 23.0 1.9E+02 0.004 20.6 3.9 36 101-140 47-86 (300)
260 cd00145 POLBc DNA polymerase t 22.7 1.4E+02 0.0031 21.3 3.5 28 102-129 135-162 (323)
261 PHA02324 hypothetical protein 22.7 45 0.00097 15.8 0.6 9 95-103 38-46 (47)
262 PF08921 DUF1904: Domain of un 22.4 1.5E+02 0.0033 17.4 3.0 41 100-140 65-106 (108)
263 PF00107 ADH_zinc_N: Zinc-bind 22.4 1E+02 0.0022 17.9 2.4 33 112-144 6-38 (130)
264 PF02836 Glyco_hydro_2_C: Glyc 22.3 2.8E+02 0.006 19.3 5.4 61 85-145 12-77 (298)
265 PF02679 ComA: (2R)-phospho-3- 22.2 1.9E+02 0.0042 19.9 3.8 38 108-145 85-131 (244)
266 PF06564 YhjQ: YhjQ protein; 21.9 1.9E+02 0.0041 19.9 3.7 43 98-141 8-52 (243)
267 PRK15418 transcriptional regul 21.7 1.9E+02 0.0042 20.6 3.9 46 99-144 36-86 (318)
268 smart00116 CBS Domain in cysta 21.6 92 0.002 13.5 2.5 17 56-74 25-41 (49)
269 cd04627 CBS_pair_14 The CBS do 21.5 1.7E+02 0.0036 16.7 3.2 19 55-75 100-118 (123)
270 cd04610 CBS_pair_ParBc_assoc T 21.5 1.6E+02 0.0034 16.1 3.0 17 56-74 85-101 (107)
271 PF00289 CPSase_L_chain: Carba 21.5 1.9E+02 0.004 17.0 3.3 26 109-134 14-39 (110)
272 PRK00301 aat leucyl/phenylalan 21.4 2.8E+02 0.0061 19.0 11.0 112 16-145 89-202 (233)
273 TIGR01105 galF UTP-glucose-1-p 21.2 1E+02 0.0022 21.7 2.5 28 105-132 33-60 (297)
274 TIGR02085 meth_trns_rumB 23S r 21.2 2.2E+02 0.0047 20.8 4.2 51 90-147 301-355 (374)
275 TIGR03032 conserved hypothetic 21.1 3.3E+02 0.0072 19.8 5.7 37 55-101 282-318 (335)
276 COG4904 Uncharacterized protei 21.1 44 0.00095 20.9 0.6 14 133-146 73-86 (174)
277 PF10237 N6-adenineMlase: Prob 21.0 2.4E+02 0.0051 18.0 4.5 54 89-146 86-142 (162)
278 COG1208 GCD1 Nucleoside-diphos 20.9 1.5E+02 0.0033 21.5 3.4 28 105-132 31-58 (358)
279 TIGR00151 ispF 2C-methyl-D-ery 20.8 2.4E+02 0.0052 17.9 4.1 33 95-128 63-95 (155)
280 PF04919 DUF655: Protein of un 20.7 1.2E+02 0.0025 19.8 2.4 18 103-120 123-140 (181)
281 PF03465 eRF1_3: eRF1 domain 3 20.6 1.4E+02 0.003 17.5 2.6 33 108-140 70-103 (113)
282 PRK13368 3-deoxy-manno-octulos 20.4 1.3E+02 0.0028 20.0 2.8 38 105-142 26-65 (238)
283 TIGR01440 conserved hypothetic 20.4 2.2E+02 0.0048 18.3 3.5 45 102-146 42-92 (172)
284 KOG1602 Cis-prenyltransferase 20.3 2.2E+02 0.0048 19.9 3.7 30 99-128 59-88 (271)
285 PF14520 HHH_5: Helix-hairpin- 20.3 1.2E+02 0.0027 15.2 2.1 16 102-117 44-59 (60)
286 cd04603 CBS_pair_KefB_assoc Th 20.0 1.8E+02 0.0039 16.2 3.5 31 41-74 75-105 (111)
No 1
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.97 E-value=8.9e-30 Score=148.25 Aligned_cols=149 Identities=50% Similarity=0.830 Sum_probs=139.0
Q ss_pred cccCceEEEeCcCCCcchHHHHHHhhhcCCCCCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeeecC
Q 031789 4 VEKNRFQVRKLEITDKSKGFIELLQQLSVCDSVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFLRN 83 (153)
Q Consensus 4 ~~~~~~~ir~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~ 83 (153)
++|..+.+|++..+|..+..++++.++......+++++..++..+......+.+.|++|...+++||++.+.+...+.+.
T Consensus 2 ~~P~~~~lR~L~~~D~~kGf~elL~qLT~vG~vt~e~F~krf~~mk~~~~~Y~i~Vied~~s~~vigtatL~IE~KfIh~ 81 (150)
T KOG3396|consen 2 SLPDGFKLRPLEEDDYGKGFIELLKQLTSVGVVTREQFEKRFEAMKKSGDWYYIVVIEDKESEKVIGTATLFIERKFIHG 81 (150)
T ss_pred CCCCceEEeecccccccchHHHHHHHHhhccccCHHHHHHHHHHHHhcCCcEEEEEEEeCCcCeEEEEEEEEEehhhhhc
Confidence 45677999999999999669999999999889999999999999988886788999998767999999999999999999
Q ss_pred CCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCceeeCceeeeec
Q 031789 84 CGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQKGIHMTMYF 152 (153)
Q Consensus 84 ~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~~~~~~~~~~ 152 (153)
++..++|..+.|++++||+++|+.|+..+...+++.|+.++.+.|.+.|+.||+|+||...+..|..|+
T Consensus 82 ~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~lgcYKi~LdC~~~nv~FYeKcG~s~~~~~M~~r~ 150 (150)
T KOG3396|consen 82 CGSRGHIEDVVVDSEYRGKQLGKLLVETLVDLAKSLGCYKIILDCDPKNVKFYEKCGYSNAGNEMTKRF 150 (150)
T ss_pred ccccCceeEEEeChhhhhhHHhHHHHHHHHHHHHhcCcEEEEEecchhhhhHHHHcCccccchhheecC
Confidence 999999999999999999999999999999999999999999999999999999999999998887764
No 2
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=99.95 E-value=3.4e-26 Score=142.11 Aligned_cols=146 Identities=68% Similarity=1.168 Sum_probs=115.1
Q ss_pred CceEEEeCcCCCcchHHHHHHhhhcCCCCCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeeecCCCc
Q 031789 7 NRFQVRKLEITDKSKGFIELLQQLSVCDSVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFLRNCGK 86 (153)
Q Consensus 7 ~~~~ir~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~ 86 (153)
..+.||+++++|++..+..++.......+++.+.+...+......+.....+++.+++++++||++.+...+........
T Consensus 5 ~~~~ir~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~ 84 (150)
T PLN02706 5 EKFKVRRLEISDKSKGFLELLQQLTVVGDVTEEEFEARFQELASLGDDHLICVIEDAASGRIIATGSVFVERKFIRNCGK 84 (150)
T ss_pred CceEEeEhhhcccchHHHHHHHhccCCCCCCHHHHHHHHHHHHhCCCcEEEEEEEeCCCCcEEEEEEEEEEeecccCCCc
Confidence 45889999999987127888777666566788888887776554333445556655224899999888644322223345
Q ss_pred eeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCceeeCceeeeec
Q 031789 87 VGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQKGIHMTMYF 152 (153)
Q Consensus 87 ~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~~~~~~~~~~ 152 (153)
.+++..++|+|+|||+|+|++|++.++++|++.|+.++.+.+.+.|.+||+|+||+..+..|..++
T Consensus 85 ~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~~g~~~i~l~~~~~N~~~y~k~GF~~~g~~~~~~~ 150 (150)
T PLN02706 85 VGHIEDVVVDSAARGKGLGKKIIEALTEHARSAGCYKVILDCSEENKAFYEKCGYVRKEIQMVKYF 150 (150)
T ss_pred EEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeccccHHHHHHCcCEEehhheEecC
Confidence 678889999999999999999999999999999999999999999999999999999999887653
No 3
>PTZ00330 acetyltransferase; Provisional
Probab=99.94 E-value=4.5e-25 Score=136.58 Aligned_cols=143 Identities=38% Similarity=0.562 Sum_probs=108.3
Q ss_pred ccCceEEEeCcCCCcchHHHHHHhhhcCCCCCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeeecCC
Q 031789 5 EKNRFQVRKLEITDKSKGFIELLQQLSVCDSVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFLRNC 84 (153)
Q Consensus 5 ~~~~~~ir~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~ 84 (153)
|+.++.||+++++|++ ++.+++.........+.+.+..+............++++.++ |++||++.+...+......
T Consensus 3 ~~~~~~ir~~~~~D~~-~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~vG~~~~~~~~~~~~~~ 79 (147)
T PTZ00330 3 MSGSLELRDLEEGDLG-SVLELLSHLTSAPALSQEELEQIAARRRLAGVVTRVFVHSPT--QRIVGTASLFVEPKFTRGG 79 (147)
T ss_pred CcceEEEEEcccccHH-HHHHHHHHhcCCCccchhHHHHHHHHHhcCCCceEEEEEeCC--CEEEEEEEEEeccccccCC
Confidence 4456899999999999 699998876654445555555544433222212344455454 8999999887543322222
Q ss_pred CceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCceeeCceeee
Q 031789 85 GKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQKGIHMTM 150 (153)
Q Consensus 85 ~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~~~~~~~~ 150 (153)
...++|..++|+|+|||+|+|++|++.+++++++.++..+.+.+++.+++||+|+||+.....+..
T Consensus 80 ~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~~~~~~~l~l~~n~~a~~~y~k~GF~~~~~~~~~ 145 (147)
T PTZ00330 80 KCVGHIEDVVVDPSYRGQGLGRALISDLCEIARSSGCYKVILDCTEDMVAFYKKLGFRACERQMRL 145 (147)
T ss_pred CceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEecChHHHHHHHHCCCEEeceEEEE
Confidence 345789999999999999999999999999999999999999988888999999999999877654
No 4
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=99.92 E-value=1.5e-23 Score=129.29 Aligned_cols=138 Identities=18% Similarity=0.300 Sum_probs=103.2
Q ss_pred CceEEEeCcCCCcchHHHHHHhhhcCCCCCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeeecCCCc
Q 031789 7 NRFQVRKLEITDKSKGFIELLQQLSVCDSVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFLRNCGK 86 (153)
Q Consensus 7 ~~~~ir~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~ 86 (153)
.++.||+++++|++ .+.+++...... .++.+.....+.+....+ ...++++.++ +++||++.+...+.. .....
T Consensus 2 ~~~~ir~a~~~D~~-~l~~l~~~~~~~-~~~~~~~~~~~~~~l~~~-~~~~~v~~~~--~~ivG~~~~~~~~~~-~~~~~ 75 (144)
T PRK10146 2 PACELRPATQYDTD-AVYALICELKQA-EFDHQAFRVGFNANLRDP-NMRYHLALLD--GEVVGMIGLHLQFHL-HHVNW 75 (144)
T ss_pred CccEEeeCcHhhHH-HHHHHHHHHhcc-cCCHHHHHHHHHHHhcCC-CceEEEEEEC--CEEEEEEEEEecccc-cccch
Confidence 34789999999999 699998765533 234444444444443333 3345566665 899999988743221 12233
Q ss_pred eeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCC---hhhhhhcCceeeCceeee
Q 031789 87 VGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGN---KAFYEKCGLKQKGIHMTM 150 (153)
Q Consensus 87 ~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n---~~~y~k~Gf~~~~~~~~~ 150 (153)
.++|..++|+|++||+|+|+.|++.+++.|++.|+..+.+.++..| ++||+|+||+..+..+..
T Consensus 76 ~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY~~~Gf~~~~~~~~~ 142 (144)
T PRK10146 76 IGEIQELVVMPQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFYLREGYEQSHFRFTK 142 (144)
T ss_pred hheeheeEECHHHcCCCHHHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHHHHcCCchhhhhhee
Confidence 4678999999999999999999999999999999999999987655 699999999998877654
No 5
>PHA00673 acetyltransferase domain containing protein
Probab=99.89 E-value=6e-22 Score=120.97 Aligned_cols=132 Identities=12% Similarity=0.157 Sum_probs=103.7
Q ss_pred eCcCCCcchHHHHHHhhhcCC----CCCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeeecCCCcee
Q 031789 13 KLEITDKSKGFIELLQQLSVC----DSVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFLRNCGKVG 88 (153)
Q Consensus 13 ~~~~~D~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~ 88 (153)
-++.+|++ ++.+|+.+.... ....+..+...++.+...+ ...+++++++ |++||++.+...+.........+
T Consensus 11 ~A~~~D~p-aI~~LLadd~l~~~r~d~~~~~~y~~af~ai~~dp-~~~llVa~~~--g~vVG~~~l~~~p~l~~~~~~~~ 86 (154)
T PHA00673 11 FAELADAP-TFASLCAEYAHESANADLAGRAPDHHAYAGMEAAG-VAHFLGVFRG--EELVGFACLLVTPVPHFKGQLIG 86 (154)
T ss_pred hccHhhHH-HHHHHHHhcccccccccccccchhHHHHHHHHhCC-CcEEEEEEEC--CEEEEEEEEEEecCCccCCccEE
Confidence 46889999 799998873211 1112233444477776666 6667777775 99999999988776555556788
Q ss_pred EEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecC-CC-hhhhhhcCceeeCcee
Q 031789 89 HIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSL-GN-KAFYEKCGLKQKGIHM 148 (153)
Q Consensus 89 ~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~-~n-~~~y~k~Gf~~~~~~~ 148 (153)
.|..++|+|++||+|||++|++++++++++.|+..++++..| .| +.||.++|++.....+
T Consensus 87 ~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~fy~~~g~~~~~~~~ 148 (154)
T PHA00673 87 TTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQLLPAAGYRETNRTF 148 (154)
T ss_pred EEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchHHHHhCCchhhchhh
Confidence 999999999999999999999999999999999999998854 44 7999999999877643
No 6
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=99.88 E-value=3.3e-21 Score=124.12 Aligned_cols=136 Identities=14% Similarity=0.108 Sum_probs=100.2
Q ss_pred CceEEEeCcCCCcchHHHHHHhhhcCC----CCC-ChHH----HHHHHHhhccCCCceEEE-EEEeCCCCceEEEEEEEe
Q 031789 7 NRFQVRKLEITDKSKGFIELLQQLSVC----DSV-SDKQ----FEERFLELNSYGDDHIVC-VIEDDRSGKIIATGSIFI 76 (153)
Q Consensus 7 ~~~~ir~~~~~D~~~~~~~~~~~~~~~----~~~-~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vG~~~~~~ 76 (153)
..+.||+++++|++ .+.+++.+.... .++ +++. +..++............+ +... +|++||++.+..
T Consensus 42 ~~~~lR~~~~~D~~-~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~g~iiG~i~l~~ 118 (191)
T TIGR02382 42 SDPGARVATETDIP-ALRQLASAAFALSRFRAPWYAPDDSGRFYAQWVENAVRGTFDHQCLILRDA--SGDPRGYVTLRE 118 (191)
T ss_pred CCCcceeCChhhHH-HHHHHHHHHhhccccCCCCcCHHHHHHHHHHHHHHHhcCCCCCeEEEEEcc--CCeEEEEEEEEe
Confidence 34689999999999 699998876321 122 2222 223333333222223333 3343 489999998863
Q ss_pred eeeeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCC---hhhhhhcCceeeCceeeee
Q 031789 77 EKKFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGN---KAFYEKCGLKQKGIHMTMY 151 (153)
Q Consensus 77 ~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n---~~~y~k~Gf~~~~~~~~~~ 151 (153)
. ....++++.++|+|++||+|+|++|++.+++++++.|+..+.+.+...| ++||+|+||+.++....+|
T Consensus 119 ~------~~~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~klGF~~~~~~~~~~ 190 (191)
T TIGR02382 119 L------NDTDARIGLLAVFPGAQSRGIGAELMQTALNWCYARGLTRLRVATQMGNTAALRLYIRSGANIESTAYWLY 190 (191)
T ss_pred c------CCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCccccceeeec
Confidence 2 1234688889999999999999999999999999899999999998777 6999999999999987765
No 7
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=99.88 E-value=8.4e-21 Score=113.26 Aligned_cols=140 Identities=16% Similarity=0.181 Sum_probs=103.3
Q ss_pred CceEEEeCcCCCcchHHHHHHhhhcCCC------CCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeee
Q 031789 7 NRFQVRKLEITDKSKGFIELLQQLSVCD------SVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKF 80 (153)
Q Consensus 7 ~~~~ir~~~~~D~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~ 80 (153)
+++.||.++++|.+ ++.++++++..-+ ..+.+.+.... ..+.+-.++..++.+.++++++|++.+... ..
T Consensus 2 ~~~~IR~at~~D~~-~i~rLikela~Fek~~~~v~~te~~l~~~~--F~d~~~~~~~v~~ie~~~~~~aGf~~yf~~-ys 77 (163)
T KOG3216|consen 2 DNIRIRLATPKDCE-DILRLIKELAEFEKLEDQVEATEENLARDG--FIDPPFKHWLVAAIETSGEVVAGFALYFNN-YS 77 (163)
T ss_pred CceEEEecCcccHH-HHHHHHHHHHHHHHhccchhhchhhhhhhh--ccCCCccEEEEEEEecCCCceeEEeeeecc-cc
Confidence 45899999999999 7999998864322 22333333321 233343444444444336899999988843 33
Q ss_pred ecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecC---CChhhhhhcCceeeCceeee
Q 031789 81 LRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSL---GNKAFYEKCGLKQKGIHMTM 150 (153)
Q Consensus 81 ~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~---~n~~~y~k~Gf~~~~~~~~~ 150 (153)
++......+|.+++|.|+|||+|+|+.|++.+-+.|.+.|+.++...+.. +++.||++.|++......-+
T Consensus 78 tW~~k~~iYleDlyV~e~yR~kG~Gs~Ll~~va~~A~~~G~~rv~w~vldwN~rAi~lY~k~gaq~l~~W~l~ 150 (163)
T KOG3216|consen 78 TWLGKQGIYLEDLYVREQYRGKGIGSKLLKFVAEEADKLGTPRVEWVVLDWNHRAILLYEKVGAQDLKEWRLF 150 (163)
T ss_pred cccccceEEEEeeEecchhcccChHHHHHHHHHHHHHHcCCCcEEEEEeccchhHHHHHHHhCccccceeEEE
Confidence 34555789999999999999999999999999999999999988887744 44799999999988775443
No 8
>PRK03624 putative acetyltransferase; Provisional
Probab=99.87 E-value=1.5e-20 Score=115.15 Aligned_cols=126 Identities=21% Similarity=0.285 Sum_probs=94.2
Q ss_pred ceEEEeCcCCCcchHHHHHHhhhcCCCCCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeeecCCCce
Q 031789 8 RFQVRKLEITDKSKGFIELLQQLSVCDSVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFLRNCGKV 87 (153)
Q Consensus 8 ~~~ir~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~ 87 (153)
.+.+|+++++|++ ++.+++.......++.... ..+......+ ...++++.++ +++||++.+... ...
T Consensus 2 ~~~ir~~~~~d~~-~i~~l~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~v~~~~--~~~vG~~~~~~~-------~~~ 68 (140)
T PRK03624 2 AMEIRVFRQADFE-AVIALWERCDLTRPWNDPE--MDIERKLNHD-PSLFLVAEVG--GEVVGTVMGGYD-------GHR 68 (140)
T ss_pred ceEEEEcccccHH-HHHHHHHhcCCCcchhhHH--HHHHHHhcCC-CceEEEEEcC--CcEEEEEEeecc-------CCC
Confidence 4789999999999 6999987763332332221 1222222223 3445566664 899999877521 233
Q ss_pred eEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCC---hhhhhhcCceeeCc
Q 031789 88 GHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGN---KAFYEKCGLKQKGI 146 (153)
Q Consensus 88 ~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n---~~~y~k~Gf~~~~~ 146 (153)
..+..++|+|+|||+|+|++|++.+++++++.|+..+.+.+.+.| +++|+|+||+..+.
T Consensus 69 ~~i~~i~v~p~~rg~Gig~~ll~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y~k~GF~~~~~ 130 (140)
T PRK03624 69 GWAYYLAVHPDFRGRGIGRALVARLEKKLIARGCPKINLQVREDNDAVLGFYEALGYEEQDR 130 (140)
T ss_pred ceEEEEEECHHHhCCCHHHHHHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHcCCccccE
Confidence 567889999999999999999999999999999999999997777 59999999998774
No 9
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=99.87 E-value=1.4e-20 Score=121.44 Aligned_cols=136 Identities=17% Similarity=0.161 Sum_probs=99.0
Q ss_pred ceEEEeCcCCCcchHHHHHHhhhcCC----CCC-ChHHH----HHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeee
Q 031789 8 RFQVRKLEITDKSKGFIELLQQLSVC----DSV-SDKQF----EERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEK 78 (153)
Q Consensus 8 ~~~ir~~~~~D~~~~~~~~~~~~~~~----~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~ 78 (153)
...||+++++|++ .+.+++.+.... .++ +.+.. ..++............+++.++ ++++||++.+...
T Consensus 46 ~~~iR~a~~~D~~-~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~g~~vG~~~l~~~- 122 (194)
T PRK10975 46 TTGARVATETDIP-ALRQLAAQAFAQSRFRAPWYAPDDSGRFYAQWIENAVRGTFDHQCLLLRDA-SGQIQGFVTLREL- 122 (194)
T ss_pred CCCcccCCcccHH-HHHHHHHHHhhhccccCccCChhHHHHHHHHHHHHhhccccCCcEEEEEcC-CCCEEEEEEEEec-
Confidence 4678999999999 699998775321 122 32222 2233322222212234444433 4899999988632
Q ss_pred eeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCC---hhhhhhcCceeeCceeeee
Q 031789 79 KFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGN---KAFYEKCGLKQKGIHMTMY 151 (153)
Q Consensus 79 ~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n---~~~y~k~Gf~~~~~~~~~~ 151 (153)
....++++.++|+|+|||+|+|++|++.+++++++.|+..+.+.+...| ++||+|+||+..++.+..|
T Consensus 123 -----~~~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~yek~Gf~~~~~~~~~~ 193 (194)
T PRK10975 123 -----NDTDARIGLLAVFPGAQGRGIGARLMQAALNWCQARGLTRLRVATQMGNLAALRLYIRSGANIESTAYWLY 193 (194)
T ss_pred -----CCCceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHHCCCeEeEEEeeec
Confidence 1234788889999999999999999999999999999999999987777 6999999999999998765
No 10
>PRK07922 N-acetylglutamate synthase; Validated
Probab=99.86 E-value=3.9e-20 Score=116.80 Aligned_cols=125 Identities=20% Similarity=0.312 Sum_probs=92.8
Q ss_pred cCceEEEeCcCCCcchHHHHHHhhhcCCCCCChHHHHHHHHhhccCCCceEEEEEE-eCCCCceEEEEEEEeeeeeecCC
Q 031789 6 KNRFQVRKLEITDKSKGFIELLQQLSVCDSVSDKQFEERFLELNSYGDDHIVCVIE-DDRSGKIIATGSIFIEKKFLRNC 84 (153)
Q Consensus 6 ~~~~~ir~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vG~~~~~~~~~~~~~~ 84 (153)
..++.+|+++++|.+ ++.++++................+.. ...++++. + ++++||++.+....
T Consensus 3 ~~~i~iR~a~~~D~~-~i~~L~~~~~~~~~~~~~~~~~~~~~------~~~~~va~~~--~~~iiG~~~~~~~~------ 67 (169)
T PRK07922 3 AGAITVRRARTSDVP-AIKRLVDPYAQGRILLEKNLVTLYEA------VQEFWVAEHL--DGEVVGCGALHVMW------ 67 (169)
T ss_pred CCCceeecCCHhhHH-HHHHHHHHHhhcCccccchHHHHHhh------cCcEEEEEec--CCcEEEEEEEeecC------
Confidence 356899999999999 69999876543222222222222222 12345666 5 48999998876421
Q ss_pred CceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCceeeCce
Q 031789 85 GKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQKGIH 147 (153)
Q Consensus 85 ~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~~~~~ 147 (153)
...+.|..++|+|++||+|+|++|++.+++++++.|+..+.+.+. +++||+|+||+..+..
T Consensus 68 ~~~~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~~~g~~~l~~~~~--~~~fY~k~GF~~~~~~ 128 (169)
T PRK07922 68 EDLAEIRTVAVDPAARGRGVGHAIVERLLDVARELGLSRVFVLTF--EVEFFARHGFVEIDGT 128 (169)
T ss_pred CCceEEEEEEECHHHhCCCHHHHHHHHHHHHHHHcCCCEEEEEec--cHHHHHHCCCEECccc
Confidence 235789899999999999999999999999999999999887654 5899999999998643
No 11
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=99.85 E-value=8.1e-20 Score=110.39 Aligned_cols=126 Identities=26% Similarity=0.331 Sum_probs=89.4
Q ss_pred EEEeCcCCCcchHHHHHHhhhcCCCCCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeeecC-CCcee
Q 031789 10 QVRKLEITDKSKGFIELLQQLSVCDSVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFLRN-CGKVG 88 (153)
Q Consensus 10 ~ir~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~-~~~~~ 88 (153)
+||+++++|.+ ++.++++..+....... ............ ..++++.++ |++||++.+....-.... ....+
T Consensus 1 ~iR~~~~~d~~-~i~~l~~~~F~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~--~~ivg~~~~~~~~~~~~g~~~~~~ 73 (127)
T PF13527_consen 1 EIRPLTESDFE-QIIELFNEAFGDSESPP-EIWEYFRNLYGP---GRCVVAEDD--GKIVGHVGLIPRRLSVGGKKFKAA 73 (127)
T ss_dssp -EEEE-GGGHH-HHHHHHHHHTTT-CHHH-HHHHHHHHHHHT---TEEEEEEET--TEEEEEEEEEEEEEEETTEEEEEE
T ss_pred CceECCHHHHH-HHHHHHHHHCCCCCCch-hhhhhhhcccCc---CcEEEEEEC--CEEEEEEEEEEEEEEECCEEEEEE
Confidence 48999999999 79999888875532222 122222332221 245666665 999999988754332222 23578
Q ss_pred EEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCceee
Q 031789 89 HIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQK 144 (153)
Q Consensus 89 ~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~~ 144 (153)
.+..++|+|+|||+|+|++|++++++.+++.|+..+.+.. .+.+||+|+||+.+
T Consensus 74 ~i~~v~v~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~--~~~~~Y~~~G~~~~ 127 (127)
T PF13527_consen 74 YIGDVAVDPEYRGRGLGRQLMRALLERARERGVPFIFLFP--SSPPFYRRFGFEYA 127 (127)
T ss_dssp EEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTT-SEEEEE---SSHHHHHHTTEEEE
T ss_pred EEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCEEEEec--CChhhhhcCCCEEC
Confidence 9999999999999999999999999999999999877755 55899999999864
No 12
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=99.85 E-value=1e-19 Score=114.19 Aligned_cols=134 Identities=16% Similarity=0.233 Sum_probs=95.1
Q ss_pred ceEEEeCcCCCcchHHHHHHhhhcC------CCCCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeee
Q 031789 8 RFQVRKLEITDKSKGFIELLQQLSV------CDSVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFL 81 (153)
Q Consensus 8 ~~~ir~~~~~D~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~ 81 (153)
.+.||+++++|++ .+.++..+... ....+.+.+...+. ... ....+++..+ |++||++++......
T Consensus 3 ~i~lr~~~~~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~v~~~~--~~~vG~~~~~~~~~~- 74 (162)
T PRK10140 3 EIVIRHAETRDYE-AIRQIHAQPEVYHNTLQVPHPSDHMWQERLA---DRP-GIKQLVACID--GDVVGHLTIDVQQRP- 74 (162)
T ss_pred ccEEEecchhhHH-HHHHHHhCcccccccccCCCcCHHHHHHHhh---cCC-CcEEEEEEEC--CEEEEEEEEeccccc-
Confidence 4889999999999 69998775321 11123333332222 222 3345566664 899999998743211
Q ss_pred cCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHH-cCCcEEEEEecCCC---hhhhhhcCceeeCceeeee
Q 031789 82 RNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHA-VGCYKVILDCSLGN---KAFYEKCGLKQKGIHMTMY 151 (153)
Q Consensus 82 ~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~-~g~~~~~~~~~~~n---~~~y~k~Gf~~~~~~~~~~ 151 (153)
.....+.+ +++|+|+|||+|+|++|++.+++++++ .++..+.+.+.+.| ++||+|+||+..+....++
T Consensus 75 -~~~~~~~~-~~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~~y~k~GF~~~g~~~~~~ 146 (162)
T PRK10140 75 -RRSHVADF-GICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIKVYKKYGFEIEGTGKKYA 146 (162)
T ss_pred -ccceEEEE-EEEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHHHHHHCCCEEEeecccce
Confidence 11223343 589999999999999999999999998 59999999887777 5899999999998866544
No 13
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=99.85 E-value=6e-20 Score=123.77 Aligned_cols=135 Identities=16% Similarity=0.176 Sum_probs=100.7
Q ss_pred ccCceEEEeCcCCCcchHHHHHHhhhcCCCCCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeeecCC
Q 031789 5 EKNRFQVRKLEITDKSKGFIELLQQLSVCDSVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFLRNC 84 (153)
Q Consensus 5 ~~~~~~ir~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~ 84 (153)
++..+.||+++++|++ ++.+++.+.....+.+... ..++..... + ....+++..+ |++||++.+... ..
T Consensus 112 ~~~~~~IR~a~~~D~~-~l~~L~~~v~~~~~~~~~~-~~~l~~~~~-~-~~~~~v~~~~--g~iVG~~~~~~~-----~~ 180 (266)
T TIGR03827 112 LPEGFTLRIATEDDAD-AMAALYRKVFPTYPFPIHD-PAYLLETMK-S-NVVYFGVEDG--GKIIALASAEMD-----PE 180 (266)
T ss_pred CCCceEEEECCHHHHH-HHHHHHHHHhccCCCCccC-HHHHHHHhc-C-CcEEEEEEEC--CEEEEEEEEecC-----CC
Confidence 4566999999999999 6999988765322111111 122222222 2 3445566665 899999887432 22
Q ss_pred CceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCC---hhhhhhcCceeeCceeee
Q 031789 85 GKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGN---KAFYEKCGLKQKGIHMTM 150 (153)
Q Consensus 85 ~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n---~~~y~k~Gf~~~~~~~~~ 150 (153)
...++|..++|+|+|||+|+|++|++.+++++++.|+..+++.+...| .++|+|+||+..|+....
T Consensus 181 ~~~~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~~~g~~~l~~~~~~~n~~a~~ly~k~GF~~~G~l~n~ 249 (266)
T TIGR03827 181 NGNAEMTDFATLPEYRGKGLAKILLAAMEKEMKEKGIRTAYTIARASSYGMNITFARLGYAYGGTLVNN 249 (266)
T ss_pred CCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCcEEEeehhhcchhHHHHHHHcCCccccEEeec
Confidence 446889999999999999999999999999999999999988887666 689999999999987543
No 14
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=99.83 E-value=3.3e-19 Score=110.21 Aligned_cols=126 Identities=19% Similarity=0.274 Sum_probs=93.1
Q ss_pred eEEEeCcCCCcchHHHHHHhhhcCCCCCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeeecCCCcee
Q 031789 9 FQVRKLEITDKSKGFIELLQQLSVCDSVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFLRNCGKVG 88 (153)
Q Consensus 9 ~~ir~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~ 88 (153)
++||+++++|++ .+.++....... +++.+.+.. .. ......+.+..+ +++||++.+... ....
T Consensus 2 ~~iR~~~~~D~~-~l~~l~~~~~~~-~~~~~~~~~----~~--~~~~~~~~~~~~--~~~vG~~~~~~~-------~~~~ 64 (146)
T PRK09491 2 NTISSLTPADLP-AAYHIEQRAHAF-PWSEKTFAS----NQ--GERYLNLKLTVN--GQMAAFAITQVV-------LDEA 64 (146)
T ss_pred cchhcCChhhhH-HHHHHHHhcCCC-CCCHHHHHH----HH--hcCceEEEEEEC--CeEEEEEEEEee-------cCce
Confidence 579999999999 688886554432 344433321 11 113333444454 899999887532 1235
Q ss_pred EEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCC---hhhhhhcCceeeCceeeee
Q 031789 89 HIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGN---KAFYEKCGLKQKGIHMTMY 151 (153)
Q Consensus 89 ~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n---~~~y~k~Gf~~~~~~~~~~ 151 (153)
.+..++|+|+|||+|+|+.+++.+++.+++.++..+.+.+.+.| .+||+|+||+..+....++
T Consensus 65 ~~~~i~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~ 130 (146)
T PRK09491 65 TLFNIAVDPDYQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYESLGFNEVTIRRNYY 130 (146)
T ss_pred EEEEEEECHHHccCCHHHHHHHHHHHHHHHCCCcEEEEEEccCCHHHHHHHHHcCCEEeeeeeccc
Confidence 67789999999999999999999999998889999999887777 5999999999888765554
No 15
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=99.83 E-value=3.9e-19 Score=110.59 Aligned_cols=133 Identities=26% Similarity=0.308 Sum_probs=93.9
Q ss_pred EEeCc-CCCcchHHHHHHhhhcC----CCCCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeeecCCC
Q 031789 11 VRKLE-ITDKSKGFIELLQQLSV----CDSVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFLRNCG 85 (153)
Q Consensus 11 ir~~~-~~D~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~ 85 (153)
||+++ .+|++ .+.+++++... ...++..........+. .......+++..+ |+++|++.+...........
T Consensus 1 ~R~a~~~~Dl~-~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~v~~~d--g~~~g~~~~~~~~~~~~~~~ 76 (152)
T PF13523_consen 1 LRPATTPDDLP-LILQWLNQPHVREFWDQDPSQEWVEEYPEQLE-ADPGHHPYVAEDD--GEPIGYFEIYWPDEDYDADD 76 (152)
T ss_dssp EEE---GGGHH-HHHHHHTSHHHHCCH-CCCTHHHHHHHHHHHC-HTTTEEEEEEEET--TEEEEEEEEEEGGGSS---T
T ss_pred CeeCccHHHHH-HHHHHHHhHHHHHHccCCCCHHHHHHHHhhhc-ccCCceEEEEEEC--CEEEEEEEEecccccccCCC
Confidence 69999 99999 69999886532 22334433333333333 2335667777775 99999998864222111135
Q ss_pred ceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHc-CCcEEEEEecCCC---hhhhhhcCceeeCce
Q 031789 86 KVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAV-GCYKVILDCSLGN---KAFYEKCGLKQKGIH 147 (153)
Q Consensus 86 ~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~-g~~~~~~~~~~~n---~~~y~k~Gf~~~~~~ 147 (153)
....++.++++|++||+|+|+.+++.+++.+++. ++..+.+.++.+| +++|+|+||+.++..
T Consensus 77 ~~~~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N~~~~~~~~k~GF~~~g~~ 142 (152)
T PF13523_consen 77 GDRGIHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDNTRAIRLYEKAGFRKVGEF 142 (152)
T ss_dssp TEEEEEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-HHHHHHHHHTT-EEEEEE
T ss_pred CEEEEeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCCHHHHHHHHHcCCEEeeEE
Confidence 6778999999999999999999999999999987 8999999999999 599999999999875
No 16
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=99.83 E-value=2.1e-19 Score=112.24 Aligned_cols=126 Identities=20% Similarity=0.225 Sum_probs=90.7
Q ss_pred EEeCcCCCcchHHHHHHhhhcCCCCCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeeecCCCceeEE
Q 031789 11 VRKLEITDKSKGFIELLQQLSVCDSVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFLRNCGKVGHI 90 (153)
Q Consensus 11 ir~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i 90 (153)
||+++.+|++ ++.+++.+...........+.. +.... ....+++.++ ++++||++.+...+ ......++
T Consensus 1 IR~~~~~D~~-~i~~L~~~~~~~~~~~~~~~~~----~~~~~-~~~~~v~~~~-~~~ivG~~~~~~~~----~~~~~~~i 69 (157)
T TIGR02406 1 FRPPRIEDGA-GIWELVKDCPPLDLNSSYAYLL----LCTDF-ADTSIVAESE-GGEIVGFVSGYLRP----DRPDVLFV 69 (157)
T ss_pred CCCCccccHH-HHHHHHHhCCCCCcccceehhh----hhhhc-CCcEEEEEcC-CCeEEEEEEEEecC----CCCCeEEE
Confidence 5889999999 7999988754322111111111 11112 2334555532 48999998765322 22345788
Q ss_pred eeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCC---hhhhhhcCceeeCce
Q 031789 91 EDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGN---KAFYEKCGLKQKGIH 147 (153)
Q Consensus 91 ~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n---~~~y~k~Gf~~~~~~ 147 (153)
..++|+|++||+|+|++|++.+++++++.++..+.+.+.+.| ++||+|+||+.....
T Consensus 70 ~~l~V~p~~rg~GiG~~L~~~l~~~a~~~~~~~i~~~v~~~N~~a~~ly~k~G~~~~~~~ 129 (157)
T TIGR02406 70 WQVAVDPRARGKGLARRLLEALLERVACERVRHLETTITPDNQASRALFKALARRRGVHL 129 (157)
T ss_pred EEEEEChHhccCcHHHHHHHHHHHHHHhCCCCEEEEEEcCCCHHHHHHHHHhCcccCCCe
Confidence 999999999999999999999999999999999999998888 589999999876543
No 17
>PRK07757 acetyltransferase; Provisional
Probab=99.83 E-value=3.1e-19 Score=111.05 Aligned_cols=121 Identities=18% Similarity=0.343 Sum_probs=88.6
Q ss_pred eEEEeCcCCCcchHHHHHHhhhcCCCCCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeeecCCCcee
Q 031789 9 FQVRKLEITDKSKGFIELLQQLSVCDSVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFLRNCGKVG 88 (153)
Q Consensus 9 ~~ir~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~ 88 (153)
+.||+++++|++ .+.+++.................... . ...+++..+ |++||++.+... ....+
T Consensus 2 ~~ir~~~~~D~~-~l~~l~~~~~~~~~~~~~~~~~~~~~-~-----~~~~i~~~~--~~lvG~~~l~~~------~~~~~ 66 (152)
T PRK07757 2 MEIRKARLSDVK-AIHALINVYAKKGLMLPRSLDELYEN-I-----RDFYVAEEE--GEIVGCCALHIL------WEDLA 66 (152)
T ss_pred ceEeeCCcccHH-HHHHHHHHHHhcCCccCCCHHHHHhc-c-----CcEEEEEEC--CEEEEEEEEEec------cCCce
Confidence 679999999999 69999876543221111111111111 1 123455554 899999988742 23457
Q ss_pred EEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCceeeCc
Q 031789 89 HIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQKGI 146 (153)
Q Consensus 89 ~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~~~~ 146 (153)
++..++|+|+|||+|+|++|++.+++.+++.|+..+.+.+ .+.+||+|+||++.+.
T Consensus 67 ~i~~v~V~p~~rg~Glg~~Ll~~l~~~a~~~g~~~i~~~~--~~~~~Y~k~GF~~~~~ 122 (152)
T PRK07757 67 EIRSLAVSEDYRGQGIGRMLVEACLEEARELGVKRVFALT--YQPEFFEKLGFREVDK 122 (152)
T ss_pred EEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCeEEEEe--CcHHHHHHCCCEEccc
Confidence 8889999999999999999999999999988998876654 4579999999999875
No 18
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.83 E-value=1.4e-18 Score=107.72 Aligned_cols=135 Identities=23% Similarity=0.265 Sum_probs=107.1
Q ss_pred eEEEeCcCCCcchHHHHHHhhhcC-------CCCCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeee
Q 031789 9 FQVRKLEITDKSKGFIELLQQLSV-------CDSVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFL 81 (153)
Q Consensus 9 ~~ir~~~~~D~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~ 81 (153)
+.||+++..|++ .+.++++.... ..+++.+...+++...... .+.++++..+ +|+++|++.+......
T Consensus 2 ~~ir~~~~~Dl~-~I~~IY~~~v~~~~a~~e~~~~~~~~~~~~~~~~~~~--g~p~~V~~~~-~g~v~G~a~~~~fr~r- 76 (169)
T COG1247 2 MEIRPATAADLE-AILEIYNGAVENTAATFEEDPVSLEERAAWFSGRTRD--GYPVVVAEEE-DGKVLGYASAGPFRER- 76 (169)
T ss_pred cEEecChHHhHH-HHHHHHHHhhhcceEEEeccCCCHHHHHHHHHhcccC--CceEEEEEcC-CCeEEEEEEeeeccCc-
Confidence 579999999999 69999997543 2467888888888776543 3566667654 5999999988753221
Q ss_pred cCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCC---hhhhhhcCceeeCceee
Q 031789 82 RNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGN---KAFYEKCGLKQKGIHMT 149 (153)
Q Consensus 82 ~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n---~~~y~k~Gf~~~~~~~~ 149 (153)
..-......+++|+|+.||+|+|++|++.+++.+...|+..+...+...| +++.+++||+..|...+
T Consensus 77 -~ay~~tve~SiYv~~~~~g~GiG~~Ll~~Li~~~~~~g~~~lva~I~~~n~aSi~lh~~~GF~~~G~~~~ 146 (169)
T COG1247 77 -PAYRHTVELSIYLDPAARGKGLGKKLLQALITEARALGVRELVAGIESDNLASIALHEKLGFEEVGTFPE 146 (169)
T ss_pred -cccceEEEEEEEECcccccccHHHHHHHHHHHHHHhCCeEEEEEEEcCCCcHhHHHHHHCCCEEeccccc
Confidence 22234556699999999999999999999999999999999888887766 69999999999987543
No 19
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=99.82 E-value=1.1e-18 Score=105.43 Aligned_cols=96 Identities=21% Similarity=0.334 Sum_probs=79.1
Q ss_pred ceEEEEEEeCCCCceEEEEEEEeeeeeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCC-
Q 031789 54 DHIVCVIEDDRSGKIIATGSIFIEKKFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGN- 132 (153)
Q Consensus 54 ~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n- 132 (153)
...++++.++ ++..||.+....... .....++|..++|+++|||+|||++|++.+++.++..|+..+++.+...|
T Consensus 55 p~~~~~a~d~-~~~~VGai~ck~~~~---r~~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~~~g~~eVvLeTe~~n~ 130 (165)
T KOG3139|consen 55 PCFCFLALDE-KGDTVGAIVCKLDTH---RNTLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMRSRGYSEVVLETEVTNL 130 (165)
T ss_pred ceEEEEEEcC-CCceEEEEEEecccc---CCcceEEEEEEEechhhccccHHHHHHHHHHHHHHHCCCcEEEEeccccch
Confidence 4455566664 244799887775322 12457999999999999999999999999999999999999999997666
Q ss_pred --hhhhhhcCceeeCceeeeecC
Q 031789 133 --KAFYEKCGLKQKGIHMTMYFV 153 (153)
Q Consensus 133 --~~~y~k~Gf~~~~~~~~~~~~ 153 (153)
.++|+++||+..+..+.||++
T Consensus 131 ~A~~LY~sLGF~r~~r~~~YYln 153 (165)
T KOG3139|consen 131 SALRLYESLGFKRDKRLFRYYLN 153 (165)
T ss_pred HHHHHHHhcCceEecceeEEEEC
Confidence 699999999999999999875
No 20
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=99.82 E-value=1.1e-18 Score=108.86 Aligned_cols=134 Identities=22% Similarity=0.332 Sum_probs=95.5
Q ss_pred EEeCcCCCcchHHHHHHhhhc----CCC---CCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeeecC
Q 031789 11 VRKLEITDKSKGFIELLQQLS----VCD---SVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFLRN 83 (153)
Q Consensus 11 ir~~~~~D~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~ 83 (153)
||+++++|++ ++..++++.. ... ..+.+....++......+....+.+... +|++||++.+.... .
T Consensus 1 IR~~~~~D~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~g~iiG~~~~~~~~----~ 73 (155)
T PF13420_consen 1 IRPATEEDLE-EILKLYNEPRHEYFFTFEYPEDSEESFERWIESIIDSSKQRLFLVAEE--DGKIIGYVSLRDID----P 73 (155)
T ss_dssp EEE--GGGHH-HHHHHHHHHHHHTSSSSCSSHS-HHHHHHHHHHHHHHHTTEEEEEEEC--TTEEEEEEEEEESS----S
T ss_pred CCCCcHHHHH-HHHHHHhhhhhcceeEecCCCCCHHHHHHHHHHhcccCCCcEEEEEEc--CCcEEEEEEEEeee----c
Confidence 7999999999 6999987532 111 1344556666666532232444545543 49999999888431 2
Q ss_pred CCceeEEeeEEeCcCcccCchHHHHHHHHHHHH-HHcCCcEEEEEecCCC---hhhhhhcCceeeCceeeeec
Q 031789 84 CGKVGHIEDVVVDASARGMQLGKKIIKFLTDHA-HAVGCYKVILDCSLGN---KAFYEKCGLKQKGIHMTMYF 152 (153)
Q Consensus 84 ~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~-~~~g~~~~~~~~~~~n---~~~y~k~Gf~~~~~~~~~~~ 152 (153)
....+.+ +++|.|++|++|+|+.|+..++++| .+.|+.++.+.+...| ++||+++||+..+...+.++
T Consensus 74 ~~~~~~~-~~~v~~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~~~~GF~~~g~~~~~~~ 145 (155)
T PF13420_consen 74 YNHTAEL-SIYVSPDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFYKKLGFEEEGELKDHIF 145 (155)
T ss_dssp GTTEEEE-EEEEEGGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cCCEEEE-eeEEChhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHHHhCCCEEEEEEecEEE
Confidence 2345555 4888899999999999999999999 7779999999997777 69999999999998876653
No 21
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.82 E-value=1.1e-18 Score=127.45 Aligned_cols=136 Identities=23% Similarity=0.262 Sum_probs=100.0
Q ss_pred cCceEEEeC-cCCCcchHHHHHHhhhcCCCCCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeeecCC
Q 031789 6 KNRFQVRKL-EITDKSKGFIELLQQLSVCDSVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFLRNC 84 (153)
Q Consensus 6 ~~~~~ir~~-~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~ 84 (153)
+.++.||++ +++|++ ++.+++...... +++.+.+.. .. ..+ ...++++.++.+|++||++.+........+.
T Consensus 80 ~~g~~IR~~~~~~D~~-~I~~L~~~~~~~-p~~~~~~~~---~~-~~~-~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~ 152 (547)
T TIGR03103 80 PRGFTVRRLRGPADVD-AINRLYAARGMV-PVRVDFVLD---HR-HSR-AITYLVAEDEASGAIIGTVMGVDHRKAFNDP 152 (547)
T ss_pred CCCcEEEeCCChhHHH-HHHHHHHhcCCC-CCCHHHHHH---Hh-cCC-CceEEEEEECCCCeEEEEEEEEeccccccCC
Confidence 456899997 689999 699998875432 344443322 21 122 3456677653358999998764322211222
Q ss_pred CceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCC---hhhhhhcCceeeCcee
Q 031789 85 GKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGN---KAFYEKCGLKQKGIHM 148 (153)
Q Consensus 85 ~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n---~~~y~k~Gf~~~~~~~ 148 (153)
....++..++|+|+|||+|+|++|++.+++++++.|+..+.+.+..+| ++||+|+||+.+....
T Consensus 153 ~~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~G~~~i~L~V~~~N~~Ai~fY~klGf~~~~~y~ 219 (547)
T TIGR03103 153 EHGSSLWCLAVDPQAAHPGVGEALVRALAEHFQSRGCAYMDLSVMHDNEQAIALYEKLGFRRIPVFA 219 (547)
T ss_pred CCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcCCCHHHHHHHHHCCCEEeeEEE
Confidence 344788999999999999999999999999999999999999998777 6999999999876543
No 22
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=99.81 E-value=7.4e-19 Score=98.50 Aligned_cols=77 Identities=29% Similarity=0.463 Sum_probs=68.3
Q ss_pred CCceEEEEEEEeeeeeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCCh---hhhhhcCc
Q 031789 65 SGKIIATGSIFIEKKFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGNK---AFYEKCGL 141 (153)
Q Consensus 65 ~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~---~~y~k~Gf 141 (153)
+|++||++.+...+... .....++|..++|+|+|||+|+|+.|++.+++++++.|+..+.+.+.+.|. +||+|+||
T Consensus 4 ~~~ivg~~~~~~~~~~~-~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k~Gf 82 (83)
T PF00583_consen 4 DGQIVGFASLRPPPEPF-DHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYEKLGF 82 (83)
T ss_dssp TTEEEEEEEEEEEETTT-TTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHHHTTE
T ss_pred CCEEEEEEEEEECCCcc-ccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHHHcCC
Confidence 49999999998754322 115789999999999999999999999999999999999999999988884 99999999
Q ss_pred e
Q 031789 142 K 142 (153)
Q Consensus 142 ~ 142 (153)
+
T Consensus 83 ~ 83 (83)
T PF00583_consen 83 E 83 (83)
T ss_dssp E
T ss_pred C
Confidence 6
No 23
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.80 E-value=2.6e-18 Score=103.73 Aligned_cols=119 Identities=24% Similarity=0.420 Sum_probs=95.4
Q ss_pred EEEeCcCCCcchHHHHHHhhhcCCCCC---ChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeeecCCCc
Q 031789 10 QVRKLEITDKSKGFIELLQQLSVCDSV---SDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFLRNCGK 86 (153)
Q Consensus 10 ~ir~~~~~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~ 86 (153)
.+|.++.+|++ .+.+++..+....-. +.+.+...+.+ +++++.+ |.+||++.+... ....
T Consensus 2 ~iR~A~~~Di~-~I~~Li~~~~~~gil~~rs~~~le~~i~d---------F~i~E~~--g~viGC~aL~~~-----~~~~ 64 (153)
T COG1246 2 QIRKARISDIP-AILELIRPLELQGILLRRSREQLEEEIDD---------FTIIERD--GKVIGCAALHPV-----LEED 64 (153)
T ss_pred ceeeccccchH-HHHHHHHHHhhccccchhhHHHHHHHHhh---------heeeeeC--CcEEEEEeeccc-----CccC
Confidence 58999999999 799999887765422 23333333332 4566665 999999999831 3467
Q ss_pred eeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCceeeCc
Q 031789 87 VGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQKGI 146 (153)
Q Consensus 87 ~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~~~~ 146 (153)
.+++.+++|+|++||+|+|..|++.++..|++.|++++++-++ ....||+++||+.+..
T Consensus 65 ~gE~~~laV~pd~r~~G~G~~Ll~~~~~~Ar~~gi~~lf~LTt-~~~~~F~~~GF~~vd~ 123 (153)
T COG1246 65 LGELRSLAVHPDYRGSGRGERLLERLLADARELGIKELFVLTT-RSPEFFAERGFTRVDK 123 (153)
T ss_pred eeeEEEEEECHHhcCCCcHHHHHHHHHHHHHHcCCceeeeeec-ccHHHHHHcCCeECcc
Confidence 8999999999999999999999999999999999999888665 4578999999998764
No 24
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=99.80 E-value=4e-18 Score=103.24 Aligned_cols=118 Identities=21% Similarity=0.362 Sum_probs=87.5
Q ss_pred CcchHHHHHHhhhcCCCCCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeeecCCCceeEEeeEEeCc
Q 031789 18 DKSKGFIELLQQLSVCDSVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFLRNCGKVGHIEDVVVDA 97 (153)
Q Consensus 18 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~v~p 97 (153)
|++ ++.++....... +++.+.+...+. .. ....+++.++ +++||++.+... .....+..++|+|
T Consensus 1 d~~-~i~~~~~~~~~~-~~~~~~~~~~~~----~~-~~~~~~~~~~--~~~vg~~~~~~~-------~~~~~i~~~~v~~ 64 (131)
T TIGR01575 1 DLK-AVLEIEAAAFAF-PWTEAQFAEELA----NY-HLCYLLARIG--GKVVGYAGVQIV-------LDEAHILNIAVKP 64 (131)
T ss_pred CHH-HHHHHHHhhCCC-CCCHHHHHHHhc----CC-CceEEEEecC--CeEEEEEEEEec-------CCCeEEEEEEECH
Confidence 455 477776555443 455555554443 22 3344455544 899999987632 2346788999999
Q ss_pred CcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCC---hhhhhhcCceeeCceeeee
Q 031789 98 SARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGN---KAFYEKCGLKQKGIHMTMY 151 (153)
Q Consensus 98 ~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n---~~~y~k~Gf~~~~~~~~~~ 151 (153)
+|||+|+|++|++.+++++++.++..+.+.+.+.| .+||+|+||+..+....++
T Consensus 65 ~~rg~G~g~~ll~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~~~ 121 (131)
T TIGR01575 65 EYQGQGIGRALLRELIDEAKGRGVNEIFLEVRVSNIAAQALYKKLGFNEIAIRRNYY 121 (131)
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCCeEEEEEecccHHHHHHHHHcCCCccccccccc
Confidence 99999999999999999999989999999887666 5899999999998876543
No 25
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=99.80 E-value=4.8e-18 Score=108.08 Aligned_cols=140 Identities=19% Similarity=0.267 Sum_probs=99.8
Q ss_pred cCceEEEeCcCCCcc--hHHHHHHhhhcCC-CCCChHHHHHHHHhhccCCCceEEEEEEeCC-CC----ceEEEEEEEee
Q 031789 6 KNRFQVRKLEITDKS--KGFIELLQQLSVC-DSVSDKQFEERFLELNSYGDDHIVCVIEDDR-SG----KIIATGSIFIE 77 (153)
Q Consensus 6 ~~~~~ir~~~~~D~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~vG~~~~~~~ 77 (153)
...+.+|.+...|+. . +..+....... .+|+...+...+... ....+++..+. ++ +++|++.....
T Consensus 9 ~~~~~ir~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~v~~~~~~~~~~~~~~~G~~~~~~~ 82 (177)
T COG0456 9 EDKVTIREAINKDLLDVA-LAALEARTFDIRLPWSREYFEKDLTQA-----PELLLVAETGGLDGLLDGKVVGFLLVRVV 82 (177)
T ss_pred ccceehhhhhhcccchHH-HHHHhhhcCCCCCcchHHHHHHHHhhC-----cceeEEEEecccCCCcccceeEEEEEEEe
Confidence 345788999999988 2 33443333332 356666666555542 33444444310 13 59999888632
Q ss_pred eeeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCC-cEEEEEecCCC---hhhhhhcCceeeCceeeeec
Q 031789 78 KKFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGC-YKVILDCSLGN---KAFYEKCGLKQKGIHMTMYF 152 (153)
Q Consensus 78 ~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~-~~~~~~~~~~n---~~~y~k~Gf~~~~~~~~~~~ 152 (153)
...... ...++|..++|+|+|||+|+|++|++.+++.+++.+. ..+.+.|..+| ++||+|+||+..++...+|-
T Consensus 83 ~~~~~~-~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~~~~~~~L~V~~~N~~Ai~lY~~~GF~~~~~~~~yy~ 160 (177)
T COG0456 83 DGRPSA-DHEGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIVLEVRESNEAAIGLYRKLGFEVVKIRKNYYA 160 (177)
T ss_pred cCCccc-cCccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhcCCCceEEEEEecCChHHHHHHHHcCCEEEeeehhhcc
Confidence 211111 3378999999999999999999999999999999986 89999998777 69999999999998887764
No 26
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=99.79 E-value=1e-17 Score=108.19 Aligned_cols=140 Identities=11% Similarity=0.117 Sum_probs=95.9
Q ss_pred cCceEEEeCcCCCcchHHHHHHhhhc-C---CCCC------ChHHHH---HHHHhhccCCCceEEEEEEeCCCCceEEEE
Q 031789 6 KNRFQVRKLEITDKSKGFIELLQQLS-V---CDSV------SDKQFE---ERFLELNSYGDDHIVCVIEDDRSGKIIATG 72 (153)
Q Consensus 6 ~~~~~ir~~~~~D~~~~~~~~~~~~~-~---~~~~------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~ 72 (153)
...+.||+++++|++ .+.+++.+.. . ..+. ..+... ..+......+ ....+++....++++||.+
T Consensus 15 t~rl~LR~~~~~Da~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~iG~i 92 (194)
T PRK10809 15 TDRLVVRLVHERDAW-RLADYYAENRHFLKPWEPVRDESHCYPSGWQARLGMINEFHKQG-SAFYFALLDPDEKEIIGVA 92 (194)
T ss_pred cCcEEEEeCCHHHHH-HHHHHHHhCHHhccCCCCCCcccccCHHHHHHHHHHHHHHHhcC-cEEEEEEEECCCCeEEEEE
Confidence 456899999999999 6999887521 1 1111 112221 2233322233 2333333332248999999
Q ss_pred EEEeeeeeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHc-CCcEEEEEecCCC---hhhhhhcCceeeCcee
Q 031789 73 SIFIEKKFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAV-GCYKVILDCSLGN---KAFYEKCGLKQKGIHM 148 (153)
Q Consensus 73 ~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~-g~~~~~~~~~~~n---~~~y~k~Gf~~~~~~~ 148 (153)
.+..... .....+++ +++|+|+|||+|+|+++++.+++++++. |++++.+.+.+.| +++|+|+||+..+...
T Consensus 93 ~l~~~~~---~~~~~~ei-g~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l~ek~Gf~~~g~~~ 168 (194)
T PRK10809 93 NFSNVVR---GSFHACYL-GYSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDLLARLGFEKEGYAK 168 (194)
T ss_pred EEEeecC---CCeeeEEE-EEEECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHHHHHCCCcEEeeec
Confidence 9874211 11233455 5789999999999999999999999985 9999999998888 5999999999988765
Q ss_pred eee
Q 031789 149 TMY 151 (153)
Q Consensus 149 ~~~ 151 (153)
.++
T Consensus 169 ~~~ 171 (194)
T PRK10809 169 DYL 171 (194)
T ss_pred ccc
Confidence 443
No 27
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=99.78 E-value=3.5e-18 Score=126.62 Aligned_cols=122 Identities=17% Similarity=0.244 Sum_probs=92.3
Q ss_pred cCceEEEeCcCCCcchHHHHHHhhhcCCC---CCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeeec
Q 031789 6 KNRFQVRKLEITDKSKGFIELLQQLSVCD---SVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFLR 82 (153)
Q Consensus 6 ~~~~~ir~~~~~D~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~ 82 (153)
+.+++||+++++|++ .+.+++..+.... +.+.+.+ .. . ...+++++++ |++||++.+...
T Consensus 461 ~~gm~IR~a~~~D~~-~I~~L~~~~~~~~~~~~~~~~~l----~~---~--~~~~~Va~~~--g~IVG~~~l~~~----- 523 (614)
T PRK12308 461 TSGVKVRPARLTDID-AIEGMVAYWAGLGENLPRSRNEL----VR---D--IGSFAVAEHH--GEVTGCASLYIY----- 523 (614)
T ss_pred CCCCEEEECCHHHHH-HHHHHHHHHHhhhcccccCHHHH----hc---c--cCcEEEEEEC--CEEEEEEEEEEc-----
Confidence 345789999999999 6999987654321 1222111 11 1 1235566665 899999987642
Q ss_pred CCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCceeeCce
Q 031789 83 NCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQKGIH 147 (153)
Q Consensus 83 ~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~~~~~ 147 (153)
....++|..++|+|+|||+|+|++|++.+++++++.|+..+.+.+ .+.+||+|+||+..+..
T Consensus 524 -~~~~~~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak~~g~~~i~l~~--~a~~FYek~GF~~~~~~ 585 (614)
T PRK12308 524 -DSGLAEIRSLGVEAGWQVQGQGSALVQYLVEKARQMAIKKVFVLT--RVPEFFMKQGFSPTSKS 585 (614)
T ss_pred -CCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEee--CcHHHHHHCCCEECCcc
Confidence 234578999999999999999999999999999999999888754 45799999999998865
No 28
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=99.78 E-value=1.9e-17 Score=106.22 Aligned_cols=136 Identities=18% Similarity=0.208 Sum_probs=95.3
Q ss_pred CceEEEeCcCCCcchHHHHHHhhhcCCC-----CC-ChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeee
Q 031789 7 NRFQVRKLEITDKSKGFIELLQQLSVCD-----SV-SDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKF 80 (153)
Q Consensus 7 ~~~~ir~~~~~D~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~ 80 (153)
..+.+|+++++|++ .+.++..+..... +. .......++......+ ....+++..+ |++||++.+....
T Consensus 5 ~~l~lR~~~~~D~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~--g~~iG~~~~~~~~-- 78 (186)
T PRK15130 5 HSVKLRPLEREDLR-FVHQLDNNASVMRYWFEEPYEAFVELSDLYDKHIHDQ-SERRFVVECD--GEKAGLVELVEIN-- 78 (186)
T ss_pred CeeEEecCCHHHHH-HHHHHhcChHHHhhcCCcccccHHHHHHHHHHhhhcc-cCcEEEEEEC--CEEEEEEEEEeec--
Confidence 45889999999999 6888866532111 11 1122223333333233 2234455554 9999999876431
Q ss_pred ecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHc-CCcEEEEEecCCC---hhhhhhcCceeeCceeeee
Q 031789 81 LRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAV-GCYKVILDCSLGN---KAFYEKCGLKQKGIHMTMY 151 (153)
Q Consensus 81 ~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~-g~~~~~~~~~~~n---~~~y~k~Gf~~~~~~~~~~ 151 (153)
.....+.+ .++|+|+|||+|+|+++++.+++++++. ++.++.+.+...| ++||+|+||+..+.....+
T Consensus 79 --~~~~~~~~-~~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~yek~GF~~~~~~~~~~ 150 (186)
T PRK15130 79 --HVHRRAEF-QIIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRKLGFEVEGELIHEF 150 (186)
T ss_pred --CCCCeEEE-EEEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHHHCCCEEEEEEeheE
Confidence 11233455 5899999999999999999999999875 9999999998777 6999999999998765443
No 29
>PRK01346 hypothetical protein; Provisional
Probab=99.78 E-value=1.5e-17 Score=118.52 Aligned_cols=137 Identities=14% Similarity=0.070 Sum_probs=99.8
Q ss_pred cCceEEEeCcCCCcchHHHHHHhhhcCCCCCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeeec--C
Q 031789 6 KNRFQVRKLEITDKSKGFIELLQQLSVCDSVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFLR--N 83 (153)
Q Consensus 6 ~~~~~ir~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~--~ 83 (153)
.+.++||+++++|++ ++.++....+.. ..+.+....+.... . . . ..+++.++ +++||++.+........ .
T Consensus 4 ~~~~~iR~~~~~D~~-~i~~L~~~~f~~-~~~~~~~~~~~~~~-~-~-~-~~~va~~~--~~lvg~~~~~~~~~~~~~~~ 75 (411)
T PRK01346 4 DMAITIRTATEEDWP-AWFRAAATGFGD-SPSDEELEAWRALV-E-P-D-RTLGAFDG--DEVVGTAGAFDLRLTVPGGA 75 (411)
T ss_pred CCCceeecCCHHHHH-HHHHHHHHHcCC-CCChHHHHHHHHhc-C-c-C-CeEEEEEC--CEEEEEEEEeccccccCCCC
Confidence 456889999999999 699997776543 22444444443322 2 1 2 24556664 89999988764321111 1
Q ss_pred CCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCceeeCceeeeec
Q 031789 84 CGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQKGIHMTMYF 152 (153)
Q Consensus 84 ~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~~~~~~~~~~ 152 (153)
....++|..++|+|+|||+|+|++||+++++.+++.|+..+.+.+.. .+||+|+||........+.+
T Consensus 76 ~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~~~g~~~~~L~~~~--~~~Y~r~Gf~~~~~~~~~~i 142 (411)
T PRK01346 76 VLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIRERGEPVAALTASE--GGIYGRFGYGPATYSQSLSV 142 (411)
T ss_pred ccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHHHCCCcEEEEECCc--hhhHhhCCCeeccceEEEEE
Confidence 13578999999999999999999999999999999999888776543 58999999999987766543
No 30
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=99.78 E-value=3.3e-17 Score=104.51 Aligned_cols=136 Identities=12% Similarity=0.114 Sum_probs=98.7
Q ss_pred cCceEEEeCcCCCcchHHHHHHhhhc---------CCCCCChHHHHHHHHhhcc--CCCceEEEEEEeCCCCceEEEEEE
Q 031789 6 KNRFQVRKLEITDKSKGFIELLQQLS---------VCDSVSDKQFEERFLELNS--YGDDHIVCVIEDDRSGKIIATGSI 74 (153)
Q Consensus 6 ~~~~~ir~~~~~D~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~vG~~~~ 74 (153)
+..+.||+++++|++ .+.+++.+.. ...+.+.++..+++..... .......+++..+ |++||++.+
T Consensus 8 t~rl~Lr~~~~~D~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~--~~~iG~~~l 84 (179)
T PRK10151 8 SESLELHAVDESHVT-PLHQLVCKNKTWLQQSLNWPQFVQSEEDTRKTVQGNVMLHQRGYAKMFMIFKE--DELIGVLSF 84 (179)
T ss_pred CCcEEEEeCCHHHHH-HHHHHHHHhHHHHHhcCCCcCccCCHHHHHHHHHHHHHHHhcCCcEEEEEEEC--CEEEEEEEE
Confidence 456899999999999 6999984321 1112355666666654321 1112234455554 899999988
Q ss_pred EeeeeeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHc-CCcEEEEEecCCC---hhhhhhcCceeeCceee
Q 031789 75 FIEKKFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAV-GCYKVILDCSLGN---KAFYEKCGLKQKGIHMT 149 (153)
Q Consensus 75 ~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~-g~~~~~~~~~~~n---~~~y~k~Gf~~~~~~~~ 149 (153)
.... .....+.+ .++++|+|||+|+|+++++.+++++++. +++++.+.+...| .++|+|+||+..++...
T Consensus 85 ~~~~----~~~~~~~i-g~~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~ek~Gf~~~g~~~~ 158 (179)
T PRK10151 85 NRIE----PLNKTAYI-GYWLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVALRNGFTLEGCLKQ 158 (179)
T ss_pred Eeec----cCCCceEE-EEEEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHHHCCCEEEeEecc
Confidence 6421 12334666 4579999999999999999999999875 8999999998888 59999999999988653
No 31
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=99.77 E-value=6e-18 Score=93.98 Aligned_cols=77 Identities=29% Similarity=0.453 Sum_probs=63.4
Q ss_pred eEEEEEEeCCCCceEEEEEEEeeeeeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCChh
Q 031789 55 HIVCVIEDDRSGKIIATGSIFIEKKFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGNKA 134 (153)
Q Consensus 55 ~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~ 134 (153)
..++++.++ +++||++.+.. .....+|..++|+|++||+|+|++|++.+.+.+. ...+.+.+++.+.+
T Consensus 3 ~~~~~~~~~--~~ivG~~~~~~-------~~~~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~---~~~i~l~~~~~~~~ 70 (79)
T PF13508_consen 3 ERFFVAEDD--GEIVGFIRLWP-------NEDFAYIGYLAVDPEYRGKGIGSKLLNYLLEKAK---SKKIFLFTNPAAIK 70 (79)
T ss_dssp EEEEEEEET--TEEEEEEEEEE-------TTTEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHT---CSEEEEEEEHHHHH
T ss_pred cEEEEEEEC--CEEEEEEEEEE-------cCCEEEEEEEEECHHHcCCCHHHHHHHHHHHHcC---CCcEEEEEcHHHHH
Confidence 346677775 99999999963 2447899999999999999999999999988874 35567778888899
Q ss_pred hhhhcCcee
Q 031789 135 FYEKCGLKQ 143 (153)
Q Consensus 135 ~y~k~Gf~~ 143 (153)
||+|+||++
T Consensus 71 fY~~~GF~~ 79 (79)
T PF13508_consen 71 FYEKLGFEE 79 (79)
T ss_dssp HHHHTTEEE
T ss_pred HHHHCcCCC
Confidence 999999985
No 32
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=99.77 E-value=1.3e-18 Score=103.65 Aligned_cols=109 Identities=22% Similarity=0.346 Sum_probs=76.6
Q ss_pred CcchHHHHHHhhhcCCC--CCChHHH------HHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeeecCCCceeE
Q 031789 18 DKSKGFIELLQQLSVCD--SVSDKQF------EERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFLRNCGKVGH 89 (153)
Q Consensus 18 D~~~~~~~~~~~~~~~~--~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~ 89 (153)
|++ ++.+++.+..... ..+.+.. ...+..+...+ ...++++.++ +++||++.+.. ...
T Consensus 1 D~~-~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~--~~ivG~~~~~~----------~~~ 66 (117)
T PF13673_consen 1 DIP-AIAELYREAWQENYWDYGPEQIDAWRYSPEDLEEYLEEG-SHTIFVAEEG--GEIVGFAWLEP----------DGE 66 (117)
T ss_dssp GHH-HHHHHHHHHHHHHTTTTSHHHHHHHHSSHHHHHHHHCTC-CCEEEEEEET--TEEEEEEEEET----------CEE
T ss_pred CHH-HHHHHHHHHHHHhccCCCHHHHHHHhcCHHHHHHHHHhc-CCEEEEEEEC--CEEEEEEEEcC----------CCe
Confidence 556 5777777643221 1222222 22344444443 4677888886 99999998751 233
Q ss_pred EeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCc
Q 031789 90 IEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGL 141 (153)
Q Consensus 90 i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf 141 (153)
|..++|+|+|||+|+|++|++.+++.++. |+..+.+..+..+.+||+++||
T Consensus 67 i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~-~~~~l~~~~~~~a~~~y~~~GF 117 (117)
T PF13673_consen 67 ISHLYVLPEYRGRGIGRALLDAAEKEAKD-GIRRLTVEANERARRFYRKLGF 117 (117)
T ss_dssp EEEEEE-GGGTTSSHHHHHHHHHHHHHTT-TCEEEEEEC-HHHHHHHHHTT-
T ss_pred EEEEEEChhhcCCcHHHHHHHHHHHHHHc-CCcEEEEEeCHHHHHHHHhCCC
Confidence 88899999999999999999999999976 9888888866666899999998
No 33
>PRK09831 putative acyltransferase; Provisional
Probab=99.77 E-value=2.6e-18 Score=106.29 Aligned_cols=118 Identities=16% Similarity=0.171 Sum_probs=83.6
Q ss_pred eEEEeCcCCCcchHHHHHHhhhcCC---CCCChHHHHHHH-------HhhccCCCceEEEEEEeCCCCceEEEEEEEeee
Q 031789 9 FQVRKLEITDKSKGFIELLQQLSVC---DSVSDKQFEERF-------LELNSYGDDHIVCVIEDDRSGKIIATGSIFIEK 78 (153)
Q Consensus 9 ~~ir~~~~~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~ 78 (153)
+.||+++++|++ .+.+++.+.... ...+.+....+. ..... ...++++.++ |++||++.+..
T Consensus 1 ~~ir~a~~~D~~-~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~--~~iiG~~~~~~-- 72 (147)
T PRK09831 1 IQIRNYQPGDFQ-QLCAIFIRAVTMTASQHYSPQQIAAWAQIDESRWKEKLA---KSQVRVAVIN--AQPVGFITCIE-- 72 (147)
T ss_pred CccccCChhhHH-HHHHHHHHHHHHhhhhcCCHHHHHhccCCCHHHHHHHHh---cCceEEEEEC--CEEEEEEEehh--
Confidence 368999999999 699998764321 123333332211 11111 2235566665 99999988741
Q ss_pred eeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCceeeCcee
Q 031789 79 KFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQKGIHM 148 (153)
Q Consensus 79 ~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~~~~~~ 148 (153)
.++..++|+|++||+|+|++|++++++.++. +.+.++..+++||+|+||+.++...
T Consensus 73 ---------~~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~-----l~v~~~~~a~~~Y~k~Gf~~~g~~~ 128 (147)
T PRK09831 73 ---------HYIDMLFVDPEYTRRGVASALLKPLIKSESE-----LTVDASITAKPFFERYGFQTVKQQR 128 (147)
T ss_pred ---------ceeeeEEECHHHcCCCHHHHHHHHHHHHhhh-----eEeecchhhHHHHHHCCCEEeeccc
Confidence 4577899999999999999999999998765 3445556668999999999998753
No 34
>PLN02825 amino-acid N-acetyltransferase
Probab=99.77 E-value=6.9e-18 Score=121.38 Aligned_cols=119 Identities=21% Similarity=0.383 Sum_probs=92.1
Q ss_pred EEEeCcCCCcchHHHHHHhhhcCCC---CCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeeecCCCc
Q 031789 10 QVRKLEITDKSKGFIELLQQLSVCD---SVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFLRNCGK 86 (153)
Q Consensus 10 ~ir~~~~~D~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~ 86 (153)
.||+++.+|++ .+.++++...... .++.+.+.. . ...+++++.+ |++||++.+... ....
T Consensus 369 ~IR~At~eDi~-~I~~Li~~lee~g~lv~rs~e~le~---e------i~~f~V~e~D--g~IVG~aal~~~-----~~~~ 431 (515)
T PLN02825 369 GTRMARVEDLA-GIRQIIRPLEESGILVRRTDEELLR---A------LDSFVVVERE--GSIIACAALFPF-----FEEK 431 (515)
T ss_pred hheeCCHHHHH-HHHHHHHHHHHcCCCcCCCHHHHHh---c------CCcEEEEEEC--CEEEEEEEEEee-----cCCC
Confidence 58999999999 7999988754332 223333222 1 1135566665 999999987642 2245
Q ss_pred eeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCceeeCc
Q 031789 87 VGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQKGI 146 (153)
Q Consensus 87 ~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~~~~ 146 (153)
.+++..++|+|+|||+|+|++|++++++.|++.|+..+.+.+ +.+.+||+++||+..+.
T Consensus 432 ~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar~~G~~~L~Llt-t~a~~fY~k~GF~~~~~ 490 (515)
T PLN02825 432 CGEVAAIAVSPECRGQGQGDKLLDYIEKKAASLGLEKLFLLT-TRTADWFVRRGFSECSI 490 (515)
T ss_pred cEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEe-CcHHHHHHHCCCEEeCh
Confidence 689999999999999999999999999999999999998876 44589999999998875
No 35
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=99.77 E-value=6.2e-17 Score=99.40 Aligned_cols=128 Identities=20% Similarity=0.260 Sum_probs=92.6
Q ss_pred eEEEeCcCCCcchHHHHHHhhhcC------CCC-CChHHHHHHHHhh-c-cCCCceEEEEEEeCCCCceEEEEEEEeeee
Q 031789 9 FQVRKLEITDKSKGFIELLQQLSV------CDS-VSDKQFEERFLEL-N-SYGDDHIVCVIEDDRSGKIIATGSIFIEKK 79 (153)
Q Consensus 9 ~~ir~~~~~D~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ 79 (153)
+.||+++++|++ .+.+++.+... ... ++.+....++... . .......++++.+.+++++||++.+....
T Consensus 2 l~lr~~~~~D~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iG~i~~~~~~- 79 (142)
T PF13302_consen 2 LTLRPLTPEDAD-AIYEWRSDPEIRRYLPWGPPWPTLEEAEEWIQSRQDSWENHGYYYFAIEDKDDGEIIGFIGLYNID- 79 (142)
T ss_dssp EEEEE-HGGGHH-HHHHHHTTTTHCTTSSTTTSSSSHHHHHHHHHHHHHCHHEETEEEEEEEETTTTEEEEEEEEEEEE-
T ss_pred EEEEcCCHHHHH-HHHHHhcCHHHHHhcCCCCCCCCHHHHHHHHHHhhhhhhcccceEEEEEeccCCceEEEeeeeecc-
Confidence 689999999999 69998853211 111 3666767776631 1 11112556666665356899999995321
Q ss_pred eecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHH-cCCcEEEEEecCCC---hhhhhhcCce
Q 031789 80 FLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHA-VGCYKVILDCSLGN---KAFYEKCGLK 142 (153)
Q Consensus 80 ~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~-~g~~~~~~~~~~~n---~~~y~k~Gf~ 142 (153)
.....+.++ ++|.|++||+|+|++++..+++++++ .|+..+.+.+.+.| .++++|+||+
T Consensus 80 ---~~~~~~eig-~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~~~~~k~GF~ 142 (142)
T PF13302_consen 80 ---KNNNWAEIG-YWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASRRLLEKLGFE 142 (142)
T ss_dssp ---TTTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHHHHHHHTT-E
T ss_pred ---cCCCccccc-cchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHHHHHHHcCCC
Confidence 246677875 88999999999999999999999965 59999999999999 5999999996
No 36
>PRK10514 putative acetyltransferase; Provisional
Probab=99.76 E-value=3.2e-17 Score=101.13 Aligned_cols=118 Identities=16% Similarity=0.274 Sum_probs=81.3
Q ss_pred eEEEeCcCCCcchHHHHHHhhhcC-----CCCCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeeecC
Q 031789 9 FQVRKLEITDKSKGFIELLQQLSV-----CDSVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFLRN 83 (153)
Q Consensus 9 ~~ir~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~ 83 (153)
+.||+++++|++ ++.+++..... ..+.+.+.+...+...... ....++..+ ++++||++.+..
T Consensus 2 ~~ir~~~~~D~~-~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~iG~~~~~~------- 69 (145)
T PRK10514 2 ISIRRSRHEEGE-RLVAIWRRSVDATHDFLSAEDRAEIEELVRSFLPE--APLWVAVDE--RDQPVGFMLLSG------- 69 (145)
T ss_pred ceeeecchhhHH-HHHHHHHHHHHHhCcccCchhHHHHHHHHHHHhcc--CceEEEEec--CCcEEEEEEEec-------
Confidence 679999999999 69998876321 1122333444444443322 222233334 389999987741
Q ss_pred CCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCC---hhhhhhcCceeeCce
Q 031789 84 CGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGN---KAFYEKCGLKQKGIH 147 (153)
Q Consensus 84 ~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n---~~~y~k~Gf~~~~~~ 147 (153)
..+..++|+|+|||+|+|++|++.+++.+ ..+.+.+...| ++||+|+||+..+..
T Consensus 70 ----~~~~~~~v~p~~rgkGig~~Ll~~~~~~~-----~~i~~~v~~~N~~a~~~yek~Gf~~~~~~ 127 (145)
T PRK10514 70 ----GHMEALFVDPDVRGCGVGRMLVEHALSLH-----PELTTDVNEQNEQAVGFYKKMGFKVTGRS 127 (145)
T ss_pred ----CcEeEEEECHHhccCCHHHHHHHHHHHhc-----cccEEEeecCCHHHHHHHHHCCCEEeccc
Confidence 23557899999999999999999999864 34556665555 799999999998764
No 37
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=99.76 E-value=3.4e-17 Score=102.19 Aligned_cols=131 Identities=13% Similarity=0.080 Sum_probs=97.2
Q ss_pred EEEeCcCCCcchHHHHHHhhhc------CCCCCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeeecC
Q 031789 10 QVRKLEITDKSKGFIELLQQLS------VCDSVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFLRN 83 (153)
Q Consensus 10 ~ir~~~~~D~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~ 83 (153)
.+|+++++|++ .+.++..+.. ..+..+.+....++......+ ....+++..+ |++||++.+.... .
T Consensus 2 ~lr~~~~~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--g~~vG~~~~~~~~----~ 73 (156)
T TIGR03585 2 NFTPLNSEELE-LVLEWRNHPDVRANMYSDHLIDWEEHLHFIEALKQDP-NRRYWIVCQE--SRPIGVISFTDIN----L 73 (156)
T ss_pred CcccCCHHHHH-HHHHhhCCHHHHhhccCcCCCCHHHHHHHHHHhhcCC-CceEEEEEEC--CEEEEEEEEEecC----h
Confidence 47999999999 6998866431 122355566666666665544 3345566654 9999999987432 1
Q ss_pred CCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHc-CCcEEEEEecCCC---hhhhhhcCceeeCceeee
Q 031789 84 CGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAV-GCYKVILDCSLGN---KAFYEKCGLKQKGIHMTM 150 (153)
Q Consensus 84 ~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~-g~~~~~~~~~~~n---~~~y~k~Gf~~~~~~~~~ 150 (153)
....+.++ ++++|.+| +|+|++++..+++++++. ++..+.+.+.+.| ++||+|+||+..+....+
T Consensus 74 ~~~~~~~g-~~~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~k~Gf~~~g~~~~~ 142 (156)
T TIGR03585 74 VHKSAFWG-IYANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYEKFGFEREGVFRQG 142 (156)
T ss_pred hhCeEEEE-EEeChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEEeccCHHHHHHHHHcCCeEeeeehhh
Confidence 12345554 55999999 999999999999999875 9999999997777 699999999999977654
No 38
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=99.75 E-value=1.7e-16 Score=98.70 Aligned_cols=131 Identities=14% Similarity=0.114 Sum_probs=100.8
Q ss_pred CceEEEeCcCCCcchHHHHHHhhhcCCCCCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeeecCCCc
Q 031789 7 NRFQVRKLEITDKSKGFIELLQQLSVCDSVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFLRNCGK 86 (153)
Q Consensus 7 ~~~~ir~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~ 86 (153)
+++.+|..++.|++ ++.++..+.+. +.......+.+...... .....+++.++ |++||.+.+..-.-. .....
T Consensus 2 ~~~~ir~e~~~d~~-~i~~~~~~aF~--~~~e~~~v~~lR~~~~~-~~~LslVA~d~--g~vvG~Il~s~v~~~-g~~~~ 74 (171)
T COG3153 2 MMMLIRTETPADIP-AIEALTREAFG--PGREAKLVDKLREGGRP-DLTLSLVAEDD--GEVVGHILFSPVTVG-GEELG 74 (171)
T ss_pred CccEEEecChhhHH-HHHHHHHHHhh--cchHHHHHHHHHhcCCc-ccceeEEEeeC--CEEEEEEEEeEEEec-Ccccc
Confidence 34689999999999 68888777765 23344444444443322 36678888886 999999988854322 23456
Q ss_pred eeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCceeeCce
Q 031789 87 VGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQKGIH 147 (153)
Q Consensus 87 ~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~~~~~ 147 (153)
...+..++|+|++||||||++|++..++.++..|+..+.+.-++. +|.|.||+.....
T Consensus 75 ~~~LaPLaV~p~~qg~GIG~~Lvr~~le~a~~~G~~~v~vlGdp~---YY~rfGF~~~~~~ 132 (171)
T COG3153 75 WLGLAPLAVDPEYQGQGIGSALVREGLEALRLAGASAVVVLGDPT---YYSRFGFEPAAGA 132 (171)
T ss_pred eEEEEeEEEchhhcCCcHHHHHHHHHHHHHHHCCCCEEEEecCcc---cccccCcEEcccc
Confidence 788999999999999999999999999999999999888765654 9999999988654
No 39
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.75 E-value=1.5e-16 Score=108.73 Aligned_cols=137 Identities=20% Similarity=0.197 Sum_probs=93.9
Q ss_pred cCceEEEeCcC-CCcchHHHHHHhhhcCC----CCCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeee
Q 031789 6 KNRFQVRKLEI-TDKSKGFIELLQQLSVC----DSVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKF 80 (153)
Q Consensus 6 ~~~~~ir~~~~-~D~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~ 80 (153)
+..+++|+++. .|.+ ++.++....... ..++.+.+..........+ .. .+++.++.++++||++.+....
T Consensus 147 ~~g~~~r~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~a~~~~~~~~vG~~~~~~~~-- 221 (292)
T TIGR03448 147 PDGVTVRAYVGAPDDA-EWLRVNNAAFAWHPEQGGWTRADLAERRAEPWFDP-AG-LFLAFDDAPGELLGFHWTKVHP-- 221 (292)
T ss_pred CCCeEeeccCCCcchH-HHHHHHHHHhhCCCccCCcCHHHHHHHhhCcCCCc-Cc-eEEEEECCCCcEEEEEEEEecC--
Confidence 56799999864 4777 577775554332 1345554443322111112 22 3445442248999997554321
Q ss_pred ecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCC---hhhhhhcCceeeCceee
Q 031789 81 LRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGN---KAFYEKCGLKQKGIHMT 149 (153)
Q Consensus 81 ~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n---~~~y~k~Gf~~~~~~~~ 149 (153)
.....+++..++|+|+|||+|+|++|+..+++++++.|+..+.+.+.+.| ++||+|+||+..+....
T Consensus 222 --~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~~g~~~v~l~v~~~N~~a~~~y~k~GF~~~~~~~~ 291 (292)
T TIGR03448 222 --DEPALGEVYVVGVDPAAQGRGLGDALTLIGLHHLAARGLPAVMLYVEADNEAAVRTYEKLGFTVAEVDVA 291 (292)
T ss_pred --CCCceeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHHHHcCCEEcccccc
Confidence 12234677778999999999999999999999999999999999997776 69999999999877653
No 40
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=99.74 E-value=4.2e-17 Score=116.57 Aligned_cols=123 Identities=16% Similarity=0.292 Sum_probs=90.0
Q ss_pred eEEEeCcCCCcchHHHHHHhhhcCCCCCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeeecCCCcee
Q 031789 9 FQVRKLEITDKSKGFIELLQQLSVCDSVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFLRNCGKVG 88 (153)
Q Consensus 9 ~~ir~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~ 88 (153)
+.+|+++++|++ ++.++++...... +......+.+... ...+++++++ +++||++.+... .....+
T Consensus 283 ~~IR~at~~Dl~-~I~~L~~~~~~~~-~~~~~~~~~l~~~-----~~~~~V~~~d--g~iVG~~~~~~~-----~~~~~~ 348 (429)
T TIGR01890 283 ESIRQATIDDIG-GIAALIRPLEEQG-ILVRRSREYLERE-----ISEFSIIEHD--GNIIGCAALYPY-----AEEDCG 348 (429)
T ss_pred hheEECCHHHHH-HHHHHHHHHHHcC-CchhhhHHHHHhh-----cCcEEEEEEC--CEEEEEEEEEec-----CCCCeE
Confidence 479999999999 6999987543221 2111122222221 1124556664 899999988742 223468
Q ss_pred EEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCceeeCc
Q 031789 89 HIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQKGI 146 (153)
Q Consensus 89 ~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~~~~ 146 (153)
++..++|+|+|||+|+|++|++++++++++.|+..+.+.. +...+||+|+||+..+.
T Consensus 349 ~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~~~G~~~l~v~~-~~a~~fY~k~GF~~~g~ 405 (429)
T TIGR01890 349 EMACLAVSPEYQDGGRGERLLAHIEDRARQMGISRLFVLT-TRTGHWFRERGFQTASV 405 (429)
T ss_pred EEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEee-cchHHHHHHCCCEECCh
Confidence 8999999999999999999999999999999999876543 33479999999999986
No 41
>PRK05279 N-acetylglutamate synthase; Validated
Probab=99.74 E-value=2.7e-17 Score=118.01 Aligned_cols=120 Identities=23% Similarity=0.334 Sum_probs=89.6
Q ss_pred eEEEeCcCCCcchHHHHHHhhhcCCC---CCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeeecCCC
Q 031789 9 FQVRKLEITDKSKGFIELLQQLSVCD---SVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFLRNCG 85 (153)
Q Consensus 9 ~~ir~~~~~D~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~ 85 (153)
+.||+++++|++ ++.+++....... .++.+. +... ...+++++++ +++||++.+... ...
T Consensus 295 ~~IR~at~~D~~-~I~~L~~~~~~~~~~~~~~~~~----l~~~-----~~~~~va~~d--g~iVG~~~~~~~-----~~~ 357 (441)
T PRK05279 295 EQLRRATIDDVG-GILELIRPLEEQGILVRRSREQ----LERE-----IDKFTVIERD--GLIIGCAALYPF-----PEE 357 (441)
T ss_pred HHeEeCCHHHHH-HHHHHHHHHHHcCCccccCHHH----Hhcc-----cCcEEEEEEC--CEEEEEEEEEEc-----CCC
Confidence 679999999999 6999886542221 122222 2211 1224566665 899999877632 223
Q ss_pred ceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCceeeCc
Q 031789 86 KVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQKGI 146 (153)
Q Consensus 86 ~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~~~~ 146 (153)
..++|..++|+|+|||+|+|++|++++++++++.|+..+.+.+ ..+++||+|+||+..+.
T Consensus 358 ~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~l~l~~-~~a~~fY~k~GF~~~g~ 417 (441)
T PRK05279 358 KMGEMACLAVHPDYRGSGRGERLLKRIEQRARQLGLKRLFVLT-TRTAHWFLERGFVPVDV 417 (441)
T ss_pred CeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEec-chHHHHHHHCcCEECCh
Confidence 4688999999999999999999999999999999999887644 45689999999999986
No 42
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.73 E-value=1.3e-16 Score=110.26 Aligned_cols=127 Identities=16% Similarity=0.220 Sum_probs=95.3
Q ss_pred ccCceEEEeCcCCCcchHHHHHHhhhc--C--CCCCChHHHHHHHHhhccCCCceEEEEEEeC-CCCceEEEEEEEeeee
Q 031789 5 EKNRFQVRKLEITDKSKGFIELLQQLS--V--CDSVSDKQFEERFLELNSYGDDHIVCVIEDD-RSGKIIATGSIFIEKK 79 (153)
Q Consensus 5 ~~~~~~ir~~~~~D~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vG~~~~~~~~~ 79 (153)
+.+.++||+++++|++ .+.++..+.. . ...++.+++...+.. + ..+.....+. .++.+||++.+..
T Consensus 183 l~m~~~Ir~a~~~Dl~-ri~~L~~~tnqfn~~~~~~s~~~i~~~l~~----~-~~~~~~~~d~~gd~givG~~~~~~--- 253 (320)
T TIGR01686 183 LELSLNISKNDEQNVQ-RVEELLGRTNQFNATYTRLNQEDVAQHMQK----E-EIVTVSMSDRFGDSGIIGIFVFEK--- 253 (320)
T ss_pred CCCEEEEEECChhhhH-HHHHHHHhHHhhhccCccCCHHHHHHHhcC----C-CEEEEEEEecCCCCceEEEEEEEe---
Confidence 4566899999999999 5999987652 1 235666666655533 2 2222222220 1478999988753
Q ss_pred eecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEec--CCC---hhhhhhcCceee
Q 031789 80 FLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCS--LGN---KAFYEKCGLKQK 144 (153)
Q Consensus 80 ~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~--~~n---~~~y~k~Gf~~~ 144 (153)
....++|..++|+|++||+|+|++|++.+++.+++.|+..+.+.+. ..| ++||+++||+..
T Consensus 254 ----~~~~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~~~G~~~i~l~v~~~~~N~~A~~fY~~~GF~~~ 319 (320)
T TIGR01686 254 ----KEGNLFIDDLCMSCRALGRGVETRMLRWLFEQALDLGNHNARLYYRRTERNMPFLSFYEQIGFEDE 319 (320)
T ss_pred ----cCCcEEEEEEEEcHhHhcCcHHHHHHHHHHHHHHHcCCCeEEEEEeeCCCchHHHHHHHHcCCccC
Confidence 2346789999999999999999999999999999999999999773 456 589999999864
No 43
>PRK10314 putative acyltransferase; Provisional
Probab=99.73 E-value=4.7e-17 Score=101.13 Aligned_cols=84 Identities=15% Similarity=0.165 Sum_probs=69.2
Q ss_pred EEEEeCCCCceEEEEEEEeeeeeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHc-CCcEEEEEecCCChhhh
Q 031789 58 CVIEDDRSGKIIATGSIFIEKKFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAV-GCYKVILDCSLGNKAFY 136 (153)
Q Consensus 58 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~-g~~~~~~~~~~~n~~~y 136 (153)
+++.++ +++||++.+.... .....+.|+.++|+|+|||+|+|++|++.++++++.. +...+.+.++..+.+||
T Consensus 51 ~~~~~~--~~~vg~~r~~~~~----~~~~~~~i~rv~V~~~~rG~GiG~~Lm~~~~~~~~~~~~~~~i~L~a~~~a~~fY 124 (153)
T PRK10314 51 ILGWKN--DELVAYARILKSD----DDLEPVVIGRVIVSEALRGEKVGQQLMSKTLESCTRHWPDKPVYLGAQAHLQNFY 124 (153)
T ss_pred EEEEEC--CEEEEEEEEecCC----CCCCCEEEEEEEECHHHhCCCHHHHHHHHHHHHHHHHCCCCcEEEehHHHHHHHH
Confidence 344454 8999999987421 1223579999999999999999999999999999876 77888898887778999
Q ss_pred hhcCceeeCce
Q 031789 137 EKCGLKQKGIH 147 (153)
Q Consensus 137 ~k~Gf~~~~~~ 147 (153)
+|+||++++..
T Consensus 125 ~k~GF~~~g~~ 135 (153)
T PRK10314 125 QSFGFIPVTEV 135 (153)
T ss_pred HHCCCEECCCc
Confidence 99999998864
No 44
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.72 E-value=7.8e-17 Score=109.28 Aligned_cols=79 Identities=30% Similarity=0.398 Sum_probs=69.9
Q ss_pred ceEEEEEEeCCCCceEEEEEEEeeeeeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCCh
Q 031789 54 DHIVCVIEDDRSGKIIATGSIFIEKKFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGNK 133 (153)
Q Consensus 54 ~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~ 133 (153)
.+.+++..++ +++||++.+.. ..|..++|+|+|||+|+|++|++.+++++++.|+..+.+.++..|.
T Consensus 5 ~~~~~v~~~~--~~iVG~~~l~~-----------~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t~~~~~ 71 (297)
T cd02169 5 DYTVGIFDDA--GELIATGSIAG-----------NVLKCVAVCPKYQGEGLALKIVSELINKAYEEGIFHLFLFTKPKNA 71 (297)
T ss_pred cEEEEEEEEC--CEEEEEEEecc-----------CEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcccHH
Confidence 4556666665 89999988751 2588999999999999999999999999999999999999988889
Q ss_pred hhhhhcCceeeC
Q 031789 134 AFYEKCGLKQKG 145 (153)
Q Consensus 134 ~~y~k~Gf~~~~ 145 (153)
+||+|+||+..+
T Consensus 72 ~fYek~GF~~~~ 83 (297)
T cd02169 72 KFFRGLGFKELA 83 (297)
T ss_pred HHHHHCCCEEec
Confidence 999999999988
No 45
>PHA01807 hypothetical protein
Probab=99.71 E-value=5.2e-16 Score=95.87 Aligned_cols=121 Identities=15% Similarity=0.127 Sum_probs=81.6
Q ss_pred eCcCCCcchHHHHHHhhhcCC-C---CC-ChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeeecCCCce
Q 031789 13 KLEITDKSKGFIELLQQLSVC-D---SV-SDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFLRNCGKV 87 (153)
Q Consensus 13 ~~~~~D~~~~~~~~~~~~~~~-~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~ 87 (153)
.++.+|+. .+..+....... + +| +.++....+....... ....+++.++ |++||++.+...... .....
T Consensus 8 ~~~~~d~~-~~~~l~l~~l~e~p~~~~w~s~ee~~~~~~~~~~~~-~~~~lva~~d--g~lvG~~~l~~~~~~--~~~~i 81 (153)
T PHA01807 8 HAKAGTPS-ELQGLCWLAIQELEEFTLFRSKEEALERILDSTESN-DRTELLVFRD--GKLAGIAVLVFEDDP--HVGPC 81 (153)
T ss_pred hhhhCCHH-HHHHHHHHHHHhCccCCCCCChHHHHHHHHHHhhCC-CceEEEEEEC--CEEEEEEEEEcCCCc--ceeee
Confidence 45678888 577776554221 1 12 2233323333322223 3444566665 999999988754311 11223
Q ss_pred eEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCC---hhhhhhc
Q 031789 88 GHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGN---KAFYEKC 139 (153)
Q Consensus 88 ~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n---~~~y~k~ 139 (153)
..+..++|+|+|||+|+|++||+.++++|++.|+..+.+.++..| ++||++.
T Consensus 82 ~~l~~lYV~pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l~v~~~n~~a~~~y~~~ 136 (153)
T PHA01807 82 LGVQWQYVLPEYRNAGVAREFLRELIRLAGEGNLPLIAFSHREGEGRYTIHYRRV 136 (153)
T ss_pred ccceeEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHHhc
Confidence 344558999999999999999999999999999999999999988 5999874
No 46
>PRK10562 putative acetyltransferase; Provisional
Probab=99.70 E-value=8.8e-16 Score=94.78 Aligned_cols=117 Identities=16% Similarity=0.268 Sum_probs=79.7
Q ss_pred EEeCcCCCcchHHHHHHhhhcCC-CCCChHHH-H---HHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeeecCCC
Q 031789 11 VRKLEITDKSKGFIELLQQLSVC-DSVSDKQF-E---ERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFLRNCG 85 (153)
Q Consensus 11 ir~~~~~D~~~~~~~~~~~~~~~-~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~ 85 (153)
||+++.+|++ ++.+++...... .++..... . ..+..... + ....+++.++ +++||++.+...
T Consensus 2 ir~~~~~D~~-~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~v~~~~--~~~iG~~~~~~~-------- 68 (145)
T PRK10562 2 IREYQPSDLP-AILQLWLESTIWAHPFIKEQYWRESAPLVRDVYL-P-AAQTWVWEED--GKLLGFVSVLEG-------- 68 (145)
T ss_pred cccccchhhH-HHHHHHHHhccccCCCCCHHHHHHhHHHhhhhhc-C-cccEEEEEEC--CEEEEEEEEeec--------
Confidence 7999999999 699997764321 12222221 1 11122111 1 2234555554 899999987521
Q ss_pred ceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCC---hhhhhhcCceeeCce
Q 031789 86 KVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGN---KAFYEKCGLKQKGIH 147 (153)
Q Consensus 86 ~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n---~~~y~k~Gf~~~~~~ 147 (153)
..++.++|+|+|||+|+|++|++.+++. +..+.+.+...| ++||+|+||+.++..
T Consensus 69 --~~i~~~~v~~~~rg~G~g~~ll~~~~~~-----~~~~~~~v~~~N~~s~~~y~k~Gf~~~~~~ 126 (145)
T PRK10562 69 --RFVGALFVAPKAVRRGIGKALMQHVQQR-----YPHLSLEVYQKNQRAVNFYHAQGFRIVDSA 126 (145)
T ss_pred --cEEEEEEECHHHcCCCHHHHHHHHHHhh-----CCeEEEEEEcCChHHHHHHHHCCCEEcccc
Confidence 3577899999999999999999988774 355667776656 699999999998853
No 47
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.66 E-value=2.1e-15 Score=103.17 Aligned_cols=123 Identities=18% Similarity=0.218 Sum_probs=83.3
Q ss_pred eCcCCCcchHHHHHHhhhcCC---CCCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeeecCCCceeE
Q 031789 13 KLEITDKSKGFIELLQQLSVC---DSVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFLRNCGKVGH 89 (153)
Q Consensus 13 ~~~~~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~ 89 (153)
+++++|++ ++.++....... .+++.+ +...+..... . ....+++.++ +++||++.+.... .....
T Consensus 5 ~l~~~d~~-~v~~L~~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~--~~~vG~~~~~~~~------~~~~~ 72 (292)
T TIGR03448 5 ALDADLRR-DVRELLAAATAVDGVAPVSEQ-VLRGLREPGA-G-HTRHLVAVDS--DPIVGYANLVPAR------GTDPA 72 (292)
T ss_pred cCCHHHHH-HHHHHHHHHHhcCCCCCCCHH-HHhhccccCC-C-CceEEEEEEC--CEEEEEEEEEcCC------CCcce
Confidence 56788888 688888754432 234433 3333322111 1 2234555654 8999999876421 22357
Q ss_pred EeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCC---hhhhhhcCceeeCceeeee
Q 031789 90 IEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGN---KAFYEKCGLKQKGIHMTMY 151 (153)
Q Consensus 90 i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n---~~~y~k~Gf~~~~~~~~~~ 151 (153)
+..++|+|+|||+|+|++|++.+++.+. ..+.+.+...| ++||+++||+.......+.
T Consensus 73 ~~~l~V~p~~rg~GiG~~Ll~~~~~~~~----~~~~~~~~~~n~~a~~fy~~~Gf~~~~~~~~~~ 133 (292)
T TIGR03448 73 MAELVVHPAHRRRGIGRALIRALLAKGG----GRLRVWAHGDLPAARALASRLGLVPTRELLQMR 133 (292)
T ss_pred EEEEEECHhhcCCCHHHHHHHHHHHhcc----CceEEEEcCCCHHHHHHHHHCCCEEccEEEEEE
Confidence 8889999999999999999999998764 34555565544 7999999999988765554
No 48
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=99.63 E-value=5.7e-15 Score=101.74 Aligned_cols=81 Identities=26% Similarity=0.372 Sum_probs=70.0
Q ss_pred eEEEEEEeCCCCceEEEEEEEeeeeeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCChh
Q 031789 55 HIVCVIEDDRSGKIIATGSIFIEKKFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGNKA 134 (153)
Q Consensus 55 ~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~ 134 (153)
...+++.++ |++||++++.- ..+..++|+|+|||+|+|++|+..+++.+++.|+..+.+.+.+.|.+
T Consensus 31 d~~vv~~~~--~~lVg~g~l~g-----------~~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~G~~~l~l~Tk~~~~~ 97 (332)
T TIGR00124 31 EIFIAVYED--EEIIGCGGIAG-----------NVIKCVAIDESLRGEGLALQLMTELENLAYELGRFHLFIFTKPEYAA 97 (332)
T ss_pred CEEEEEEEC--CEEEEEEEEec-----------CEEEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEECchHHH
Confidence 345555564 89999998851 24789999999999999999999999999999999999999988899
Q ss_pred hhhhcCceeeCcee
Q 031789 135 FYEKCGLKQKGIHM 148 (153)
Q Consensus 135 ~y~k~Gf~~~~~~~ 148 (153)
||+++||.+.+...
T Consensus 98 fy~klGF~~i~~~~ 111 (332)
T TIGR00124 98 LFEYCGFKTLAEAK 111 (332)
T ss_pred HHHHcCCEEeeeec
Confidence 99999999988643
No 49
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=99.62 E-value=3.9e-15 Score=89.72 Aligned_cols=135 Identities=20% Similarity=0.228 Sum_probs=96.2
Q ss_pred eEEEeCcCCCcchHHHHHHhhhcCCCCCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeeecCCCcee
Q 031789 9 FQVRKLEITDKSKGFIELLQQLSVCDSVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFLRNCGKVG 88 (153)
Q Consensus 9 ~~ir~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~ 88 (153)
+.||.++++|+- .+... +-...+ ..-.....+......+ ...+|++|. +|+|||++.......+ .+..+.+
T Consensus 2 m~iR~ar~~DL~-~mQ~~-Nl~~lp---ENyqmkyylyh~lswp--~lSyVA~D~-~gkiVGYvlAkmee~p-~~~~~hG 72 (193)
T KOG3235|consen 2 MNIRRARPDDLL-EMQHC-NLLNLP---ENYQMKYYLYHGLSWP--QLSYVAEDE-NGKIVGYVLAKMEEDP-DDEPPHG 72 (193)
T ss_pred cccccCCHHHHH-Hhhhc-ccccCc---HHHhHHHHHHhhcccc--cceEEEEcC-CCcEEEEeeeehhhcc-cCCCCCC
Confidence 468999998887 23332 222211 1112223333433333 346778765 7999999888755422 2345579
Q ss_pred EEeeEEeCcCcccCchHHHHHHHHHHHHHHc-CCcEEEEEecCCC---hhhhh-hcCceeeCceeeeec
Q 031789 89 HIEDVVVDASARGMQLGKKIIKFLTDHAHAV-GCYKVILDCSLGN---KAFYE-KCGLKQKGIHMTMYF 152 (153)
Q Consensus 89 ~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~-g~~~~~~~~~~~n---~~~y~-k~Gf~~~~~~~~~~~ 152 (153)
.|.+++|...||+.|+|++||........+. ++..+.+++...| +.+|+ .+||+.......||-
T Consensus 73 hItSlaV~rs~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~LY~~tl~F~v~eve~kYYa 141 (193)
T KOG3235|consen 73 HITSLAVKRSYRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALHLYKNTLGFVVCEVEPKYYA 141 (193)
T ss_pred eeEEeeehhhHHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHHhhhhccceEEeeccccccc
Confidence 9999999999999999999999988777665 8899999997777 59999 899999998887773
No 50
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=99.61 E-value=1.7e-14 Score=94.17 Aligned_cols=130 Identities=21% Similarity=0.240 Sum_probs=86.9
Q ss_pred CceEEEeCcCCCcchHHHHHHhhhcCCC---CCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeeecC
Q 031789 7 NRFQVRKLEITDKSKGFIELLQQLSVCD---SVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFLRN 83 (153)
Q Consensus 7 ~~~~ir~~~~~D~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~ 83 (153)
..+.+|.+...|.. +-..+......+ ..+.+.......+. .....++ .+++ |++|+.+.... .
T Consensus 132 ~~~~~r~a~~~D~~--i~~~~~~~~l~~~g~~~~~~~~~~~~~a~---g~~~~~f-~~~d--~~iVa~A~t~a------~ 197 (268)
T COG3393 132 EELDVRLAAAKDMF--IPEVGLRATLDDFGRADSRKEAVAVLNAL---GRSRTYF-LEGD--GKIVAKAETAA------E 197 (268)
T ss_pred ccceeeeeeccccc--chheeeeeeecccccCcchHHHHHHHHHh---hceeEEE-EccC--CcEEEeeeccc------c
Confidence 45667888888875 333333322221 22333222222222 2133333 3333 79999988773 5
Q ss_pred CCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCC---hhhhhhcCceeeCceeeee
Q 031789 84 CGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGN---KAFYEKCGLKQKGIHMTMY 151 (153)
Q Consensus 84 ~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n---~~~y~k~Gf~~~~~~~~~~ 151 (153)
.+..+.|..++++|+|||||+|+.|+..+.+..-..|.. -.+.++.+| .+.|+|.||+..|....+-
T Consensus 198 ~~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~eGk~-~~L~~~~~N~~A~~iY~riGF~~~g~~~~~~ 267 (268)
T COG3393 198 NPAYAQINGVYTHPEYRGKGYATALVATLAAKLLAEGKI-PCLFVNSDNPVARRIYQRIGFREIGEFREYI 267 (268)
T ss_pred CCcceEEEEEEcCHHHccccHHHHHHHHHHHHHHhCCCe-eEEEEecCCHHHHHHHHHhCCeecceEEEEe
Confidence 567899999999999999999999999999988888754 445554555 7999999999999876654
No 51
>PRK13688 hypothetical protein; Provisional
Probab=99.59 E-value=3.2e-14 Score=88.40 Aligned_cols=87 Identities=11% Similarity=0.125 Sum_probs=60.5
Q ss_pred ceEEEEEEeCCCCceEEEEEEEeeee----eecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEec
Q 031789 54 DHIVCVIEDDRSGKIIATGSIFIEKK----FLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCS 129 (153)
Q Consensus 54 ~~~~~~~~~~~~~~~vG~~~~~~~~~----~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~ 129 (153)
...++++.++ +++||++.+..... ........++|+.++|+|+|||||+|++|++.+. +.++. +.+...
T Consensus 44 ~~~~~~~~~~--~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~V~p~~rgkGiG~~Ll~~a~----~~~~~-~~~~~~ 116 (156)
T PRK13688 44 ESPFYGIYYG--DSLVARMSLYKKGGVEEPYFEDTQDYLELWKLEVLPKYQNRGYGEMLVDFAK----SFQLP-IKTIAR 116 (156)
T ss_pred CCCEEEEEEC--CEEEEEEEEEecCCcccccccCCCCeEEEEEEEECHHHcCCCHHHHHHHHHH----HhCCe-EEEEec
Confidence 3444556664 89999887753221 1112345689999999999999999999998544 34443 333344
Q ss_pred CCChhhhhhcCceeeCce
Q 031789 130 LGNKAFYEKCGLKQKGIH 147 (153)
Q Consensus 130 ~~n~~~y~k~Gf~~~~~~ 147 (153)
..+.+||+|+||+..+..
T Consensus 117 ~~a~~FY~k~GF~~~~~~ 134 (156)
T PRK13688 117 NKSKDFWLKLGFTPVEYK 134 (156)
T ss_pred cchHHHHHhCCCEEeEEe
Confidence 445899999999988765
No 52
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=99.49 E-value=3.8e-13 Score=75.52 Aligned_cols=58 Identities=24% Similarity=0.276 Sum_probs=48.0
Q ss_pred eEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCC---hhhhhhcCceeeCc
Q 031789 88 GHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGN---KAFYEKCGLKQKGI 146 (153)
Q Consensus 88 ~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n---~~~y~k~Gf~~~~~ 146 (153)
+.|..++|+|++||+|+|+.++..+.+.+.+.|.. ..+.+..+| +++|+|+||+....
T Consensus 22 g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~-~~l~v~~~N~~s~~ly~klGf~~~~~ 82 (86)
T PF08445_consen 22 GEIGGVYTLPEHRRRGLGSALVAALARELLERGKT-PFLYVDADNEASIRLYEKLGFREIEE 82 (86)
T ss_dssp CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSE-EEEEEETT-HHHHHHHHHCT-EEEEE
T ss_pred cEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCc-EEEEEECCCHHHHHHHHHcCCEEEEE
Confidence 78999999999999999999999999999988755 466676666 69999999999854
No 53
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=2.7e-12 Score=81.97 Aligned_cols=140 Identities=16% Similarity=0.185 Sum_probs=91.3
Q ss_pred cCceEEEeCcCCCcchHHHHHHhhhc------CCC----CCChHHHHHHHHhhccCCC-ceEEEEEEeCCCCceEEEEEE
Q 031789 6 KNRFQVRKLEITDKSKGFIELLQQLS------VCD----SVSDKQFEERFLELNSYGD-DHIVCVIEDDRSGKIIATGSI 74 (153)
Q Consensus 6 ~~~~~ir~~~~~D~~~~~~~~~~~~~------~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~vG~~~~ 74 (153)
...+.+|+....|+. .+........ ... ..........+........ ..+.+....+.++++||.+.+
T Consensus 7 ~~r~~lr~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~ 85 (187)
T COG1670 7 TLRLLLREVDLEDLE-LLAEWANDPEVMLFWWLPPPLTPPTSDEELLRLLAEAWEDLGGGAFAIELKATGDGELIGVIGL 85 (187)
T ss_pred cceeEeecCcHhHHH-HHHHHhcChHhhcccCCCCCcccccchHHHHHHHHHHHhhcCCceEEEEEEeCCCCeEEEEEEE
Confidence 344667777888888 4664432211 111 1223333444444333332 223333333213589999999
Q ss_pred EeeeeeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHc-CCcEEEEEecCCC---hhhhhhcCceeeCceee
Q 031789 75 FIEKKFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAV-GCYKVILDCSLGN---KAFYEKCGLKQKGIHMT 149 (153)
Q Consensus 75 ~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~-g~~~~~~~~~~~n---~~~y~k~Gf~~~~~~~~ 149 (153)
..... ......+.+ ..+++|+++|+|+|++++..++++++.. ++.++.+.+.+.| +++++|+||+..+....
T Consensus 86 ~~~~~--~~~~~~~~i-g~~l~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~~S~rv~ek~Gf~~eg~~~~ 161 (187)
T COG1670 86 SDIDR--AANGDLAEI-GYWLDPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENEASIRVYEKLGFRLEGELRQ 161 (187)
T ss_pred EEecc--ccccceEEE-EEEEChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCHHHHHHHHHcCChhhhhhhh
Confidence 85321 112344555 5567999999999999999999999985 9999999998888 59999999999987654
No 54
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=99.48 E-value=1e-12 Score=81.72 Aligned_cols=90 Identities=19% Similarity=0.171 Sum_probs=73.5
Q ss_pred ceEEEEEEeCCCCceEEEEEEEeeeeeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCC-
Q 031789 54 DHIVCVIEDDRSGKIIATGSIFIEKKFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGN- 132 (153)
Q Consensus 54 ~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n- 132 (153)
....+++.++ .+++||+..+..... ...++.++..+-|.+.|||+|||+.||+.+...+.......|.++|-..|
T Consensus 91 ~~~Yi~a~~~-~~~~vgf~~Frf~vd---~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~~~~~~kVmLTVf~~N~ 166 (202)
T KOG2488|consen 91 KLRYICAWNN-KSKLVGFTMFRFTVD---TGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLADSRHMRKVMLTVFSENI 166 (202)
T ss_pred cceEEEEEcC-CCceeeEEEEEEEcc---cCCeEEEEEEEeehhhhhccChHHHHHHHHHHHHHHHHhhhheeeeecccc
Confidence 4455566665 359999999986432 33568899999999999999999999999999998888888999996555
Q ss_pred --hhhhhhcCceeeCce
Q 031789 133 --KAFYEKCGLKQKGIH 147 (153)
Q Consensus 133 --~~~y~k~Gf~~~~~~ 147 (153)
.+||.++||.+....
T Consensus 167 ~al~Fy~~~gf~~~~~s 183 (202)
T KOG2488|consen 167 RALGFYHRLGFVVDEES 183 (202)
T ss_pred hhHHHHHHcCcccCCCC
Confidence 699999999987654
No 55
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=99.46 E-value=2e-12 Score=79.40 Aligned_cols=133 Identities=21% Similarity=0.349 Sum_probs=90.4
Q ss_pred ceEEEeCcCCCcchHHHHHHhhhcCCC----------CCChHHHHHHHHhhccCC------C---ceEEEEEEeCCCCce
Q 031789 8 RFQVRKLEITDKSKGFIELLQQLSVCD----------SVSDKQFEERFLELNSYG------D---DHIVCVIEDDRSGKI 68 (153)
Q Consensus 8 ~~~ir~~~~~D~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~~~~~~~ 68 (153)
.+.++..+..|.. ++++..+...... .+..+.+.++++...... . ....+++.++ ++++
T Consensus 3 ~~~l~~p~L~~k~-a~le~~~e~~~~~~~~~~~~~~~~~~~~~fed~L~~~~~~~~~~~~~~g~V~~~~y~~v~~-d~~i 80 (174)
T COG3981 3 EMKLRRPTLKDKD-AFLEMKKEFLTDGSTEAGAAWKADYEQEDFEDWLEDLTRQEPGNNLPEGWVPASTYWAVDE-DGQI 80 (174)
T ss_pred cccccCCchhhHH-HHHHHHHhhhhcCCcccCceeecccccccHHHHHHHHhccCCCcCCCCCceeceeEEEEec-CCcE
Confidence 3567788888888 5888766543221 222356777766643321 1 1123334443 5999
Q ss_pred EEEEEEEeeee--eecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCC---hhhhhhcCcee
Q 031789 69 IATGSIFIEKK--FLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGN---KAFYEKCGLKQ 143 (153)
Q Consensus 69 vG~~~~~~~~~--~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n---~~~y~k~Gf~~ 143 (153)
||++.+...-+ .... .++| .-.|.|+.||+|+|+++++.+++.|+..|++.+.++|+.+| .+.-+++|=..
T Consensus 81 vG~i~lRh~Ln~~ll~~---gGHI-GY~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~dN~ASrkvI~~NGGil 156 (174)
T COG3981 81 VGFINLRHQLNDFLLEE---GGHI-GYSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDKDNIASRKVIEANGGIL 156 (174)
T ss_pred EEEEEeeeecchHHHhc---CCcc-cceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCCCCchhhHHHHhcCCEE
Confidence 99999885322 1112 3334 23599999999999999999999999999999999998888 48888888665
Q ss_pred eCc
Q 031789 144 KGI 146 (153)
Q Consensus 144 ~~~ 146 (153)
..+
T Consensus 157 e~~ 159 (174)
T COG3981 157 ENE 159 (174)
T ss_pred eEE
Confidence 543
No 56
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=99.46 E-value=2.8e-13 Score=85.27 Aligned_cols=134 Identities=19% Similarity=0.202 Sum_probs=92.1
Q ss_pred eEEEeCcCCCcchHHHHHHhhhcCCCCCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeeec--CC--
Q 031789 9 FQVRKLEITDKSKGFIELLQQLSVCDSVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFLR--NC-- 84 (153)
Q Consensus 9 ~~ir~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~--~~-- 84 (153)
+.++.+++.++. ++..+.+..++.. +..+ ++....+.. ...-+.+.+ +..||............ ..
T Consensus 17 ~~l~~it~~nl~-~~~~l~~~~fP~~-y~~k----fy~~~~~~~-~~~~~A~~~---~~~v~a~~~k~~~~~~~~~r~~~ 86 (187)
T KOG3138|consen 17 IELRLITPNNLK-QLKQLNEDIFPIS-YVDK----FYPDVLSNG-DLTQLAYYN---EIAVGAVACKLIKFVQNAKRLFG 86 (187)
T ss_pred eeeccCCcchHH-HHHHHhccccCcc-hHHH----HHHHHHhcC-CHHHhhhhc---cccccceeeeehhhhhhhhhhhc
Confidence 889999999999 5777755555442 2222 333333333 333333433 45555555543221110 00
Q ss_pred CceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcC-CcEEEEEecCCC---hhhhhhcCceeeCceeeeec
Q 031789 85 GKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVG-CYKVILDCSLGN---KAFYEKCGLKQKGIHMTMYF 152 (153)
Q Consensus 85 ~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g-~~~~~~~~~~~n---~~~y~k~Gf~~~~~~~~~~~ 152 (153)
....+|..+.|.|.||.+|||+.|+..+.+++.... +..+++++...| +.||++.||+.+.....+|.
T Consensus 87 ~~~~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~~~gF~~~~~~~~~y~ 158 (187)
T KOG3138|consen 87 NRVIYILSLGVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYEKRGFEIVERLKNYYS 158 (187)
T ss_pred cceeEEEeecccHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHHhcCceEeeccccccc
Confidence 115889999999999999999999999999999886 888999885444 79999999999998887764
No 57
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=99.46 E-value=1.1e-12 Score=95.24 Aligned_cols=87 Identities=15% Similarity=0.238 Sum_probs=70.5
Q ss_pred CCceEEEEEEEeeeeeec--CCCceeEEeeEEe-----------CcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCC
Q 031789 65 SGKIIATGSIFIEKKFLR--NCGKVGHIEDVVV-----------DASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLG 131 (153)
Q Consensus 65 ~~~~vG~~~~~~~~~~~~--~~~~~~~i~~~~v-----------~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~ 131 (153)
++.+||++.+........ ....++.|..+.| +|+|||+|+|++||+.+++.|++.|+..+.+.++..
T Consensus 422 ~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~G~~~i~v~s~~~ 501 (522)
T TIGR01211 422 NDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEEGSEKILVISGIG 501 (522)
T ss_pred CCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHCCCCEEEEeeCch
Confidence 478999999986432111 1233567766664 499999999999999999999999999999988888
Q ss_pred ChhhhhhcCceeeCceeeee
Q 031789 132 NKAFYEKCGLKQKGIHMTMY 151 (153)
Q Consensus 132 n~~~y~k~Gf~~~~~~~~~~ 151 (153)
+++||+|+||+..+..|...
T Consensus 502 A~~FY~klGf~~~g~ym~K~ 521 (522)
T TIGR01211 502 VREYYRKLGYELDGPYMSKR 521 (522)
T ss_pred HHHHHHHCCCEEEcceeEEe
Confidence 89999999999999988764
No 58
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=99.44 E-value=7.8e-13 Score=79.77 Aligned_cols=92 Identities=23% Similarity=0.277 Sum_probs=75.5
Q ss_pred EEEEEeCCCCceEEEEEEEeeeeeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCC---h
Q 031789 57 VCVIEDDRSGKIIATGSIFIEKKFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGN---K 133 (153)
Q Consensus 57 ~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n---~ 133 (153)
+.+++.. ++++-|++....+. ......+++..+.|.|+||+.|+|+.|+..+++-....+...+.+.+...| +
T Consensus 43 ~~~a~~p-~~~imgyimgk~Eg---~~~~wh~HvTAltVap~~Rrl~la~~lm~~led~~d~~~a~fvDLfVr~sN~iAI 118 (173)
T KOG3234|consen 43 FIVAEAP-TGEIMGYIMGKVEG---KDTEWHGHVTALTVAPDYRRLGLAAKLMDTLEDVSDVDNAYFVDLFVRVSNQIAI 118 (173)
T ss_pred hEeccCC-CCceEEEEeeeccc---cCcceeeEEEEEEechhHHHHHHHHHHHHHHHHHHHhhhhheeeeeeeccchhHH
Confidence 3444443 68999998876543 233456889999999999999999999999999888888888999997777 6
Q ss_pred hhhhhcCceeeCceeeeec
Q 031789 134 AFYEKCGLKQKGIHMTMYF 152 (153)
Q Consensus 134 ~~y~k~Gf~~~~~~~~~~~ 152 (153)
.+|+|+||....+-..||-
T Consensus 119 ~mYkkLGY~~YR~Vi~YY~ 137 (173)
T KOG3234|consen 119 DMYKKLGYSVYRTVIEYYS 137 (173)
T ss_pred HHHHhcCceEEEeeeeeec
Confidence 9999999999988888874
No 59
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=99.42 E-value=2.3e-12 Score=79.02 Aligned_cols=84 Identities=19% Similarity=0.282 Sum_probs=68.5
Q ss_pred EEEEEeCCCCceEEEEEEEeeeeeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCChhhh
Q 031789 57 VCVIEDDRSGKIIATGSIFIEKKFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGNKAFY 136 (153)
Q Consensus 57 ~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y 136 (153)
+++...++..++||...+..- ....+..++.++.|+.+.||+|+|+.||+.++.+++..|+..+++.+... .+||
T Consensus 57 sL~Ll~E~~~~VigH~rLS~i----~n~~~al~VEsVVV~k~~RG~GFGk~lMk~~E~~~R~~gf~~~yLsT~DQ-~~FY 131 (225)
T KOG3397|consen 57 SLLLLNEENDEVLGHSRLSHL----PNRDHALWVESVVVKKDQRGLGFGKFLMKSTEKWMREKGFNEAYLSTDDQ-CRFY 131 (225)
T ss_pred eeeeecccccceeeeeccccC----CCCCceeEEEEEEEehhhccccHHHHHHHHHHHHHHHhhhhheeeecccc-hhhh
Confidence 333434435889999887643 23456789999999999999999999999999999999999999977653 6899
Q ss_pred hhcCceeeC
Q 031789 137 EKCGLKQKG 145 (153)
Q Consensus 137 ~k~Gf~~~~ 145 (153)
+++||+...
T Consensus 132 e~lGYe~c~ 140 (225)
T KOG3397|consen 132 ESLGYEKCD 140 (225)
T ss_pred hhhcccccC
Confidence 999999765
No 60
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=99.36 E-value=6.7e-12 Score=74.91 Aligned_cols=88 Identities=20% Similarity=0.241 Sum_probs=69.7
Q ss_pred ceEEEEEEeCCCCceEEEEEEEeeeeeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHc-CCcEEEEEecCCC
Q 031789 54 DHIVCVIEDDRSGKIIATGSIFIEKKFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAV-GCYKVILDCSLGN 132 (153)
Q Consensus 54 ~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~-g~~~~~~~~~~~n 132 (153)
...++....+ |++++++.+..... ......|+.+.|+|++||+|+|.+||..+++.+.+. .-+-+.+.+....
T Consensus 49 ~~Hl~~~~~~--g~LvAyaRLl~~~~----~~~~~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~AQahL 122 (155)
T COG2153 49 TRHLLGWTPD--GELVAYARLLPPGA----EYEEVSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYLGAQAHL 122 (155)
T ss_pred cceEEEEcCC--CeEEEEEecCCCCC----CcCceeeeeEEECHhhhccchhHHHHHHHHHHHHhhCCCCCeEEehHHHH
Confidence 3444444433 99999999874321 122367999999999999999999999999999887 3466888888888
Q ss_pred hhhhhhcCceeeCce
Q 031789 133 KAFYEKCGLKQKGIH 147 (153)
Q Consensus 133 ~~~y~k~Gf~~~~~~ 147 (153)
+.||.+.||+..+..
T Consensus 123 q~fYa~~GFv~~~e~ 137 (155)
T COG2153 123 QDFYASFGFVRVGEE 137 (155)
T ss_pred HHHHHHhCcEEcCch
Confidence 899999999998754
No 61
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=99.30 E-value=2.6e-11 Score=81.01 Aligned_cols=80 Identities=19% Similarity=0.134 Sum_probs=58.0
Q ss_pred CceEEEEEEEeeeeeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCceeeC
Q 031789 66 GKIIATGSIFIEKKFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQKG 145 (153)
Q Consensus 66 ~~~vG~~~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~~~ 145 (153)
|++|+.|.-.. ......+| .|.++|+|||||+|+.+..+++.++.++|+.-.+-..+..++++-+|+||+...
T Consensus 174 ~~iVs~~~s~~------~~~~~~EI-~I~T~~~yR~kGLA~~~aa~~I~~Cl~~~l~P~WDc~N~~S~~lA~kLGf~~~~ 246 (265)
T PF12746_consen 174 GEIVSGCSSYF------VYENGIEI-DIETHPEYRGKGLATAVAAAFILECLENGLYPSWDCHNLASIALAEKLGFHFDF 246 (265)
T ss_dssp TEEEEEEEEEE------EETTEEEE-EEEE-CCCTTSSHHHHHHHHHHHHHHHTT-EEE-EESSHHHHHHHHHCT--EEE
T ss_pred CEEEEEEEEEE------EECCEEEE-EEEECHHhhcCCHHHHHHHHHHHHHHHCCCCcCeeCCCHHHHHHHHHcCCcccc
Confidence 88887655442 12334566 789999999999999999999999999998876665444557999999999998
Q ss_pred ceeeeec
Q 031789 146 IHMTMYF 152 (153)
Q Consensus 146 ~~~~~~~ 152 (153)
....|++
T Consensus 247 ~Y~~Y~v 253 (265)
T PF12746_consen 247 EYTAYEV 253 (265)
T ss_dssp EEEEE--
T ss_pred eeeeeee
Confidence 8877765
No 62
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=99.27 E-value=4.2e-12 Score=76.40 Aligned_cols=139 Identities=16% Similarity=0.079 Sum_probs=86.0
Q ss_pred cccCceEEEeCcCCCcchHHHHHHhhhcCCCCCChHHHHHHHHhhccCCCceEEEEEEe-CC-----CCceEEEEEEEee
Q 031789 4 VEKNRFQVRKLEITDKSKGFIELLQQLSVCDSVSDKQFEERFLELNSYGDDHIVCVIED-DR-----SGKIIATGSIFIE 77 (153)
Q Consensus 4 ~~~~~~~ir~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~vG~~~~~~~ 77 (153)
..+..+.||+..++|.. ++..+=..-++. -....++-.-....+.+ ..+..+... -+ .+.+||.+.....
T Consensus 7 ~~p~~~~irp~i~e~~q-~~~~Lea~~FPe--~erasfeii~~r~i~~p-evc~glf~~~~h~~~~~~~tLIghIigs~~ 82 (190)
T KOG4144|consen 7 LKPEAPRIRPGIPESCQ-RRHTLEASEFPE--DERASFEIIRERFISVP-EVCPGLFDEIRHFLTLCEGTLIGHIIGSLW 82 (190)
T ss_pred CCcccccCCCCChHHHH-HHhccccccCCh--hHHHHHHHHHHHHhcch-hhcchhhhhHHhhhhhccccceehhhcccC
Confidence 34556788999888877 355552222211 11112222222222222 111111111 00 2778888655432
Q ss_pred ee--e-------ecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHc-CCcEEEEEecCCChhhhhhcCceeeCc
Q 031789 78 KK--F-------LRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAV-GCYKVILDCSLGNKAFYEKCGLKQKGI 146 (153)
Q Consensus 78 ~~--~-------~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~-g~~~~~~~~~~~n~~~y~k~Gf~~~~~ 146 (153)
+. . ....+....|++++|+|+||.+|+|..|+...++..-++ -..++.+.++..-+.||++.||+.++.
T Consensus 83 ~~E~lt~ESm~kh~s~g~ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~h~pLvPFYEr~gFk~vgp 161 (190)
T KOG4144|consen 83 DKERLTQESMTKHRSGGHNIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALICHDPLVPFYERFGFKAVGP 161 (190)
T ss_pred cchhhhHHHHhhhhcCCcceeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeeecCCccchhHhcCceeecc
Confidence 11 0 012355689999999999999999999999988877766 446788888888899999999998875
No 63
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=99.21 E-value=1.8e-10 Score=60.47 Aligned_cols=57 Identities=23% Similarity=0.366 Sum_probs=49.5
Q ss_pred CceEEEEEEEeeeeeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEE
Q 031789 66 GKIIATGSIFIEKKFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVIL 126 (153)
Q Consensus 66 ~~~vG~~~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~ 126 (153)
++++|++.+..... ....+++..++|+|+|||+|+|++++..+++++++.++..+.+
T Consensus 8 ~~~ig~~~~~~~~~----~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 8 GEIVGFASLSPDGS----GGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred CEEEEEEEEEecCC----CCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 89999999885421 2467899999999999999999999999999999988888765
No 64
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=99.17 E-value=5.5e-10 Score=71.28 Aligned_cols=92 Identities=16% Similarity=0.223 Sum_probs=60.8
Q ss_pred ceEEEEEEeCCCC--ceEEEEEEEeeeeeec-------------------------------CCCceeEEeeEEeCcCcc
Q 031789 54 DHIVCVIEDDRSG--KIIATGSIFIEKKFLR-------------------------------NCGKVGHIEDVVVDASAR 100 (153)
Q Consensus 54 ~~~~~~~~~~~~~--~~vG~~~~~~~~~~~~-------------------------------~~~~~~~i~~~~v~p~~r 100 (153)
.+.+++...+ + +++|.+.+..+..... ..-..+.|..|+|+|++|
T Consensus 26 ~h~l~~l~~~--~~p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~~~~~~f~~l~g~RIvRIAvhP~~q 103 (196)
T PF13718_consen 26 NHRLFVLLQP--GDPDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQHFGDPEFAQLSGARIVRIAVHPDLQ 103 (196)
T ss_dssp TEEEEEEE-S--S--SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHHSS-TTGGGSEEEEEEEEEE-CCC-
T ss_pred cceeehhccC--CCceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHHhCCHHHHhhcceeEEEEEEChhhh
Confidence 7777788776 6 9999987775432110 012457799999999999
Q ss_pred cCchHHHHHHHHHHHH-------------------------HHcCCcEEEEEe--cCCChhhhhhcCceeeCce
Q 031789 101 GMQLGKKIIKFLTDHA-------------------------HAVGCYKVILDC--SLGNKAFYEKCGLKQKGIH 147 (153)
Q Consensus 101 g~Gig~~ll~~~~~~~-------------------------~~~g~~~~~~~~--~~~n~~~y~k~Gf~~~~~~ 147 (153)
++|+|+++++.+++++ +..+++.+-... +++-.+||.|+||.++...
T Consensus 104 ~~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDylGtSFG~t~~Ll~FW~k~gf~pv~l~ 177 (196)
T PF13718_consen 104 RMGYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYLGTSFGATPELLKFWQKNGFVPVYLG 177 (196)
T ss_dssp SSSHHHHHHHHHHHT-----------------------------S-SEEEEEEE--HHHHHHHHCTT-EEEEE-
T ss_pred cCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccCCCEEEeccCCCHHHHHHHHHCCcEEEEEe
Confidence 9999999999999999 355777655544 4444699999999988643
No 65
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=99.09 E-value=1.6e-08 Score=60.79 Aligned_cols=139 Identities=14% Similarity=0.187 Sum_probs=96.8
Q ss_pred CceEEEeCcCCCcchHHHHHHhh-----hcCCCCCChHHHHHHHHhhccCCCceEEEEEEeC--CC-----CceEEEEEE
Q 031789 7 NRFQVRKLEITDKSKGFIELLQQ-----LSVCDSVSDKQFEERFLELNSYGDDHIVCVIEDD--RS-----GKIIATGSI 74 (153)
Q Consensus 7 ~~~~ir~~~~~D~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~vG~~~~ 74 (153)
..+.+.|.++...++ .-++++. +....+.+.++-.+.-..|..+.+...+.|...+ +. +..||-+.+
T Consensus 12 ~kvILVPYe~~HV~k-YHeWMknEelr~LT~SE~LtLdeEyeMQ~sW~~DeDKlTFIVLdaE~~ea~~~ev~~MvGDvNl 90 (185)
T KOG4135|consen 12 KKVILVPYEPCHVPK-YHEWMKNEELRRLTASEPLTLDEEYEMQKSWREDEDKLTFIVLDAEMNEAGEDEVDHMVGDVNL 90 (185)
T ss_pred ceEEEeeccccchhH-HHhHhhhHHHHHhhcCCCcchhHHHHhhhhhccCCcceEEEEEechhcccCchhHhhhccceee
Confidence 347788999999994 8777664 3445566666555555566555545555444321 11 236787766
Q ss_pred Eeeeeee----cCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHc-CCcEEEEEecCCC---hhhhhhcCceeeCc
Q 031789 75 FIEKKFL----RNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAV-GCYKVILDCSLGN---KAFYEKCGLKQKGI 146 (153)
Q Consensus 75 ~~~~~~~----~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~-g~~~~~~~~~~~n---~~~y~k~Gf~~~~~ 146 (153)
.+...+. .+...++++.-....|..||+|+|+..+..++.++.+. ++.+....+..+| +++|+|++|..+..
T Consensus 91 Flt~~~~~~n~s~~~~~gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFkk~~f~q~~~ 170 (185)
T KOG4135|consen 91 FLTTSPDTENPSDDVITGEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFKKFLFTQVFY 170 (185)
T ss_pred EEecCCCcCCcccceeeeeEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHHHhhheeeee
Confidence 6543221 11234677777778999999999999999999999886 8888888886555 79999999998765
No 66
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=99.08 E-value=3.2e-09 Score=58.33 Aligned_cols=51 Identities=27% Similarity=0.207 Sum_probs=43.9
Q ss_pred CceEEEEEEEeeeeeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcE
Q 031789 66 GKIIATGSIFIEKKFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYK 123 (153)
Q Consensus 66 ~~~vG~~~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~ 123 (153)
|+.+|.+.+.. .++...+....|.|++||||+|++|++.++++|+++|.+.
T Consensus 8 g~~~a~l~Y~~-------~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~kv 58 (78)
T PF14542_consen 8 GEEIAELTYRE-------DGGVIVITHTEVPPELRGQGIAKKLVEAALDYARENGLKV 58 (78)
T ss_dssp TTEEEEEEEEE-------SSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-EE
T ss_pred CEEEEEEEEEe-------CCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCEE
Confidence 88999999863 4668889999999999999999999999999999998653
No 67
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=98.95 E-value=7.5e-08 Score=56.89 Aligned_cols=116 Identities=15% Similarity=0.263 Sum_probs=66.3
Q ss_pred eEEEeCcCCCcchHHHHHHhhhcCCCCCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeeecCCCcee
Q 031789 9 FQVRKLEITDKSKGFIELLQQLSVCDSVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFLRNCGKVG 88 (153)
Q Consensus 9 ~~ir~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~ 88 (153)
++|.+++.-+.. +..++ .+.. +..+.+.+.+.+. ....++++..+ ++++|.+.+... +..+
T Consensus 2 LTI~rl~~ls~Q-d~iDL-~KIw--p~~~~~~l~~~l~------~~~~l~aArFN--dRlLgAv~v~~~-------~~~~ 62 (128)
T PF12568_consen 2 LTIERLTTLSEQ-DRIDL-AKIW--PQQDPEQLEQWLD------EGHRLFAARFN--DRLLGAVKVTIS-------GQQA 62 (128)
T ss_dssp -EEEE-SS--HH-HHHHH-HHH---TTS----------------SSEEEEEEEET--TEEEEEEEEEEE-------TTEE
T ss_pred eEEEEcCCCCHH-HHHHH-HHhC--CCCCHHHHHHHhc------cCCeEEEEEec--hheeeeEEEEEc-------Ccce
Confidence 345555543334 35554 2333 2233444444342 25678888885 999999988753 5589
Q ss_pred EEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecC---CC----hhhhhhcCceeeC
Q 031789 89 HIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSL---GN----KAFYEKCGLKQKG 145 (153)
Q Consensus 89 ~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~---~n----~~~y~k~Gf~~~~ 145 (153)
.+..++|+|--|++|+|+.|++.+.+.+ .++....+.... .+ ..|...+||...+
T Consensus 63 ~L~~l~VRevTRrRGVG~yLlee~~rq~--p~i~~w~l~~~~~~~~~~~~~~~Fm~a~GF~~~~ 124 (128)
T PF12568_consen 63 ELSDLCVREVTRRRGVGLYLLEEVLRQL--PDIKHWWLADEGVEPQDRAVMAAFMQACGFSAQS 124 (128)
T ss_dssp EEEEEEE-TT-SSSSHHHHHHHHHHHHS---S--EEEE--TT-S--THHHHHHHHHHHT-EE-S
T ss_pred EEeeEEEeeccccccHHHHHHHHHHHHC--CCCcEEEEecCCCcccchHHHHHHHHHcCccccC
Confidence 9999999999999999999999998876 356666665432 12 2899999997654
No 68
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=98.94 E-value=3.3e-09 Score=58.80 Aligned_cols=70 Identities=14% Similarity=0.126 Sum_probs=59.8
Q ss_pred CCceEEEEEEEeeeeeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCC---hhhhhhcCc
Q 031789 65 SGKIIATGSIFIEKKFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGN---KAFYEKCGL 141 (153)
Q Consensus 65 ~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n---~~~y~k~Gf 141 (153)
+|.+|..+... ..+++.--++.|+|||||+.+.++....+.+.+.|+. ++.++.+.| +++.+++||
T Consensus 7 eG~PVSW~lmd----------qtge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P-~Y~hv~~~N~~~~r~~~~lg~ 75 (89)
T PF08444_consen 7 EGNPVSWSLMD----------QTGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFP-FYGHVDEDNEASQRLSKSLGF 75 (89)
T ss_pred CCCEeEEEEec----------ccccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCC-eEeehHhccHHHHHHHHHCCC
Confidence 48999887653 3577778899999999999999999999999999987 678888878 599999999
Q ss_pred eeeC
Q 031789 142 KQKG 145 (153)
Q Consensus 142 ~~~~ 145 (153)
....
T Consensus 76 ~~~p 79 (89)
T PF08444_consen 76 IFMP 79 (89)
T ss_pred eecC
Confidence 8764
No 69
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=98.92 E-value=5.1e-09 Score=71.46 Aligned_cols=80 Identities=13% Similarity=-0.025 Sum_probs=63.5
Q ss_pred CceEEEEEEEeeeee-ecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCceee
Q 031789 66 GKIIATGSIFIEKKF-LRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQK 144 (153)
Q Consensus 66 ~~~vG~~~~~~~~~~-~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~~ 144 (153)
.++++.+........ ....-+.+.|..+++.|.|||+|..++|+.+.++..++.|+....+ ++.+.+||+|.||+..
T Consensus 48 qkl~s~L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~kG~p~s~L--~P~s~~iYrKfGye~a 125 (389)
T COG4552 48 QKLASRLHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIARKGYPVSAL--HPFSGGIYRKFGYEYA 125 (389)
T ss_pred hhhhhcccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHHcCCeeEEe--ccCchhhHhhcccccc
Confidence 778776555422111 1122357889999999999999999999999999999999987777 7778999999999988
Q ss_pred Cce
Q 031789 145 GIH 147 (153)
Q Consensus 145 ~~~ 147 (153)
...
T Consensus 126 sn~ 128 (389)
T COG4552 126 SNY 128 (389)
T ss_pred ceE
Confidence 763
No 70
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=98.86 E-value=2.9e-08 Score=66.26 Aligned_cols=71 Identities=27% Similarity=0.345 Sum_probs=64.0
Q ss_pred CCceEEEEEEEeeeeeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCceee
Q 031789 65 SGKIIATGSIFIEKKFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQK 144 (153)
Q Consensus 65 ~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~~ 144 (153)
++++|+++++. .-.|..++|+|.+||-|++-+|+.++++.+.+.|...+.+.+.+.+.+||+.+||...
T Consensus 45 ~~~iiacGsia-----------GnvikcvAvs~s~qGeGl~lkl~TeLin~ay~~g~~hLFiyTKp~~~~lFk~~GF~~i 113 (352)
T COG3053 45 NEEIIACGSIA-----------GNVIKCVAVSESLQGEGLALKLVTELINLAYERGRTHLFIYTKPEYAALFKQCGFSEI 113 (352)
T ss_pred CCcEEEecccc-----------cceeEEEEechhcccccHHHHHHHHHHHHHHHcCCceEEEEechhHHHHHHhCCceEe
Confidence 49999998876 1346678999999999999999999999999999999999999999999999999977
Q ss_pred Cc
Q 031789 145 GI 146 (153)
Q Consensus 145 ~~ 146 (153)
..
T Consensus 114 ~~ 115 (352)
T COG3053 114 AS 115 (352)
T ss_pred ec
Confidence 54
No 71
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=98.82 E-value=5.3e-07 Score=62.33 Aligned_cols=136 Identities=15% Similarity=0.189 Sum_probs=79.4
Q ss_pred ceEEEeCcCCCcchHHHHHHhhhcC---CCCCChHHHHHHHHhhcc---------CCCceEEEEEEeCCCCceEEEEEEE
Q 031789 8 RFQVRKLEITDKSKGFIELLQQLSV---CDSVSDKQFEERFLELNS---------YGDDHIVCVIEDDRSGKIIATGSIF 75 (153)
Q Consensus 8 ~~~ir~~~~~D~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~vG~~~~~ 75 (153)
++.|||++.+|++ ++.++-..... .-+.+.+.+.+.++.... .....+++|.+|.++|++||++.+.
T Consensus 1 M~viRp~~~~Dl~-aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sFa~~~~~~~~~~~YlfVLED~~tg~vvGts~I~ 79 (342)
T PF04958_consen 1 MLVIRPARPSDLD-ALYALARESGPGFTSLPPDREALAERIERSERSFAGRDVDFPGDEGYLFVLEDTETGEVVGTSAIE 79 (342)
T ss_dssp -EEEEE--GGGHH-HHHHHHHHS-TT-TTS-S-HHHHHHHHHHHHHHHH-TT----S--EEEEEEEETTT--EEEEEEEE
T ss_pred CeEEecCchhhHH-HHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhhccccCCCCccceEEEEEecCCCcEEEEEeEE
Confidence 3689999999999 79999766533 224556666555443211 1235678888886679999998665
Q ss_pred eee------------------------------eeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHc---CCc
Q 031789 76 IEK------------------------------KFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAV---GCY 122 (153)
Q Consensus 76 ~~~------------------------------~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~---g~~ 122 (153)
..- ...++.....+|++++++|+||+.|.|+.|-+.-.-.+.+. =.+
T Consensus 80 a~vG~~~PfY~yr~~~~vh~S~~L~v~~~~~~L~L~~d~tG~sEl~tLfL~p~~R~~~~G~lLSr~RfLFiA~~~~rF~~ 159 (342)
T PF04958_consen 80 AAVGLDEPFYSYRVSTLVHASRELGVRNRHETLTLSNDYTGCSELCTLFLDPDYRGGGNGRLLSRSRFLFIAQHRERFAD 159 (342)
T ss_dssp SSTTSSS---EEEEEEEEEEETTTTEEEEEEEEEEE-TTTTSEEEEEEEE-GGGTTSHHHHHHHHHHHHHHHH-GGGS-S
T ss_pred eccCCCCCcEEEEcCceeEcCcccCCccceeeEeeecCCCCCeeeEEEEECHHHcCCchHHHHHHHHHHHHHhChhhcch
Confidence 410 02233456788999999999999999998877655544432 224
Q ss_pred EEEEEe----cCCC-hhhhhhcCceee
Q 031789 123 KVILDC----SLGN-KAFYEKCGLKQK 144 (153)
Q Consensus 123 ~~~~~~----~~~n-~~~y~k~Gf~~~ 144 (153)
++.... +++. -.||+.+|=+..
T Consensus 160 ~viAElrG~~De~G~SPFWdalG~~FF 186 (342)
T PF04958_consen 160 RVIAELRGVSDEDGRSPFWDALGRHFF 186 (342)
T ss_dssp EEEEE--B---TT---HHHHHTGGGTS
T ss_pred heeeeccCCcCCCCCCchHHHhhcccc
Confidence 555543 2222 488888875543
No 72
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=98.81 E-value=6.2e-08 Score=57.10 Aligned_cols=131 Identities=19% Similarity=0.205 Sum_probs=88.8
Q ss_pred ccCceEEEeCcCCCcchHHHHHHhhhcCC-CCCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEe------e
Q 031789 5 EKNRFQVRKLEITDKSKGFIELLQQLSVC-DSVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFI------E 77 (153)
Q Consensus 5 ~~~~~~ir~~~~~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~------~ 77 (153)
.++.+.++.+...|.. +++.+=++.... .+...+.+...+.+- +++..+ |.+.|++.-.. .
T Consensus 4 vsmp~~~~D~~apd~a-avLaLNNeha~elswLe~erL~~l~~eA---------F~ArR~--G~l~afl~tFd~~a~ydS 71 (167)
T COG3818 4 VSMPILIRDVRAPDLA-AVLALNNEHALELSWLELERLYRLYKEA---------FVARRD--GNLAAFLVTFDSSARYDS 71 (167)
T ss_pred cccceehhhhcCCchh-hHHhccchhhhhccccCHHHHHHHHHHH---------HHHhhc--cchhhheeeccccccCCC
Confidence 4556778888888888 588774433222 123444444433331 244443 55555432221 1
Q ss_pred eeeecC---CCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEec--CCC---hhhhhhcCceeeCce
Q 031789 78 KKFLRN---CGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCS--LGN---KAFYEKCGLKQKGIH 147 (153)
Q Consensus 78 ~~~~~~---~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~--~~n---~~~y~k~Gf~~~~~~ 147 (153)
+++.|. ..+..++..+.|....||+|+|+++-+.+.++|+..|...+.+.++ +.| ..|-..+||.++|..
T Consensus 72 pNFlWFrErYe~F~YvDRvVVA~~aRGrG~aRalY~Dlf~~Ae~agy~~~tCEVn~DppnpasdaFHaalGF~eVG~a 149 (167)
T COG3818 72 PNFLWFRERYENFFYVDRVVVASRARGRGVARALYADLFSYAELAGYPYLTCEVNLDPPNPASDAFHAALGFHEVGQA 149 (167)
T ss_pred CceeehhhhCCceEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCceEEEEecCCCCChHHHHHhhhcCceEccce
Confidence 222222 3567899999999999999999999999999999999999999884 555 488999999999864
No 73
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=98.73 E-value=1.1e-07 Score=54.17 Aligned_cols=65 Identities=18% Similarity=0.306 Sum_probs=52.0
Q ss_pred ceEEEEEEeCCCCceEEEEEEEeeeeeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEE
Q 031789 54 DHIVCVIEDDRSGKIIATGSIFIEKKFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVIL 126 (153)
Q Consensus 54 ~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~ 126 (153)
....++..++ |+.+|.+.... ...+...|..-+|.+++||||+|++|+.++++.|++.|.+.+=+
T Consensus 14 ~~~~y~~~~~--G~~~~e~~y~~------~~~~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~kiiP~ 78 (99)
T COG2388 14 ENGRYVLTDE--GEVIGEATYYD------RGENLIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLKIIPL 78 (99)
T ss_pred CceEEEEecC--CcEEEEEEEec------CCCCEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCeEccc
Confidence 3345555554 88999988873 34567888899999999999999999999999999998765443
No 74
>PRK10456 arginine succinyltransferase; Provisional
Probab=98.71 E-value=7.3e-07 Score=61.54 Aligned_cols=135 Identities=16% Similarity=0.170 Sum_probs=87.2
Q ss_pred eEEEeCcCCCcchHHHHHHhhhc---CCCCCChHHHHHHHHhhcc-------CCCceEEEEEEeCCCCceEEEEEEEeee
Q 031789 9 FQVRKLEITDKSKGFIELLQQLS---VCDSVSDKQFEERFLELNS-------YGDDHIVCVIEDDRSGKIIATGSIFIEK 78 (153)
Q Consensus 9 ~~ir~~~~~D~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~vG~~~~~~~~ 78 (153)
+.|||+..+|++ ++.++-.... .+-+.+.+.+.++++.... .....+++|.+|.++|++||++.+...-
T Consensus 2 ~vvRpv~~~Dl~-aL~~LA~~sG~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~I~a~v 80 (344)
T PRK10456 2 MVIRPVERSDLA-ALMQLAGKTGGGLTSLPANEATLAARIERALKTWQGELPKSEQGYVFVLEDSETGTVAGICAIEVAV 80 (344)
T ss_pred eEEecCccccHH-HHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCcEEEEEeEEecc
Confidence 689999999999 7999966654 2235566666666544321 1345668888886679999998766421
Q ss_pred e------------------------------eecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHH---cCCcEEE
Q 031789 79 K------------------------------FLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHA---VGCYKVI 125 (153)
Q Consensus 79 ~------------------------------~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~---~g~~~~~ 125 (153)
. ..++.....+|++++++|+||+-|.|+.|-+.-.-.+.+ .=.+++.
T Consensus 81 G~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfl~p~~R~~~~G~LLSr~RfLFiA~~~erF~~~vi 160 (344)
T PRK10456 81 GLNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSSELCTLFLDPDWRKEGNGYLLSKSRFMFMAAFRDKFNDKVV 160 (344)
T ss_pred cCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCceeEEEEECHHHcCCCchhHHHHHHHHHHHhhHhhhhhhhh
Confidence 0 112234567899999999999999998886654433332 2223443
Q ss_pred EEe----c-CCChhhhhhcCceee
Q 031789 126 LDC----S-LGNKAFYEKCGLKQK 144 (153)
Q Consensus 126 ~~~----~-~~n~~~y~k~Gf~~~ 144 (153)
... + ..+-.||..+|=+..
T Consensus 161 AEmRG~~De~G~SPFWd~lg~hFF 184 (344)
T PRK10456 161 AEMRGVIDEHGYSPFWQSLGKRFF 184 (344)
T ss_pred eeccCccCCCCCCccHHHhhcccc
Confidence 333 2 233588888875543
No 75
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=98.68 E-value=6.6e-07 Score=61.54 Aligned_cols=134 Identities=16% Similarity=0.200 Sum_probs=85.8
Q ss_pred EEeCcCCCcchHHHHHHhhhc---CCCCCChHHHHHHHHhh-------ccCCCceEEEEEEeCCCCceEEEEEEEeeee-
Q 031789 11 VRKLEITDKSKGFIELLQQLS---VCDSVSDKQFEERFLEL-------NSYGDDHIVCVIEDDRSGKIIATGSIFIEKK- 79 (153)
Q Consensus 11 ir~~~~~D~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~- 79 (153)
|||+..+|++ ++.++-.... .+-+.+.+.+.++++.. .......+++|.+|.++|++||++.+...-.
T Consensus 2 vRpv~~~Dl~-aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~I~a~vG~ 80 (335)
T TIGR03243 2 VRPVRTSDLD-ALMQLARESGIGLTSLPADRAALGSRIARSEKSFAGESTRGEEGYLFVLEDTETGTVAGVSAIEAAVGL 80 (335)
T ss_pred cccCccccHH-HHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHHhcccCCCCccEEEEEEeCCCCeEEEEEeEEecccC
Confidence 7999999999 7999966654 22245566555554332 1223467788888866799999987664210
Q ss_pred -----------------------------eecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHH---cCCcEEEEE
Q 031789 80 -----------------------------FLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHA---VGCYKVILD 127 (153)
Q Consensus 80 -----------------------------~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~---~g~~~~~~~ 127 (153)
..++.....+|++++++|+||+.|.|+.|-+.-.-.+.+ .=.+++...
T Consensus 81 ~~PfY~yrv~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~G~LLSr~RfLFiA~~~erF~~~viAE 160 (335)
T TIGR03243 81 DEPFYNYRVGTLVHASRELGVYNKIPTLTLSNDLTGSSELCTLFLDPDYRKGGNGRLLSRSRFLFIAAFRERFGDKIIAE 160 (335)
T ss_pred CCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCchhhHHHHHHHHHHhhHhhhhhhheee
Confidence 112234567899999999999999998886654443332 222344443
Q ss_pred e----c-CCChhhhhhcCceeeC
Q 031789 128 C----S-LGNKAFYEKCGLKQKG 145 (153)
Q Consensus 128 ~----~-~~n~~~y~k~Gf~~~~ 145 (153)
. + ..+-.||+.+|=+..+
T Consensus 161 mrG~~De~G~SPFWd~lg~hFF~ 183 (335)
T TIGR03243 161 MRGVSDEQGRSPFWEALGRHFFS 183 (335)
T ss_pred ccCccCCCCCCccHHHhhccccC
Confidence 3 2 2224898888865443
No 76
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=98.63 E-value=1.9e-08 Score=75.60 Aligned_cols=62 Identities=15% Similarity=0.182 Sum_probs=50.3
Q ss_pred ceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEe--cCCChhhhhhcCceeeCcee
Q 031789 86 KVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDC--SLGNKAFYEKCGLKQKGIHM 148 (153)
Q Consensus 86 ~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~--~~~n~~~y~k~Gf~~~~~~~ 148 (153)
..+.|..|+|+|++|++|||+++++.++++++ .+++.+.... ++.-.+||.|+||.+++...
T Consensus 530 ~G~RIvRIAvhPe~q~~GiGsrlL~~l~~~a~-~~~DwlgvsFG~t~~L~rFW~rnGF~pVhls~ 593 (758)
T COG1444 530 VGWRIVRIAVHPELQRMGIGSRLLALLIEEAR-KGLDWLGVSFGYTEELLRFWLRNGFVPVHLSP 593 (758)
T ss_pred ceeeEEEEEeCHHHHhcCHHHHHHHHHHHHHh-cCCCEEeeccCCCHHHHHHHHHcCeEEEEecC
Confidence 34779999999999999999999999999996 4566554433 45557999999999987643
No 77
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=98.62 E-value=1.8e-06 Score=59.51 Aligned_cols=134 Identities=16% Similarity=0.225 Sum_probs=85.4
Q ss_pred EEeCcCCCcchHHHHHHhhhc---CCCCCChHHHHHHHHhhcc--------CCCceEEEEEEeCCCCceEEEEEEEeeee
Q 031789 11 VRKLEITDKSKGFIELLQQLS---VCDSVSDKQFEERFLELNS--------YGDDHIVCVIEDDRSGKIIATGSIFIEKK 79 (153)
Q Consensus 11 ir~~~~~D~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ 79 (153)
|||+..+|++ ++.++-.... .+-+.+.+.+.++++.... .....+++|.+|.++|++||++.+...-.
T Consensus 2 iRpv~~~Dl~-aL~~LA~~sG~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~~YlFVLEDt~tg~vvGts~I~a~vG 80 (336)
T TIGR03245 2 VRPSRFADLP-AIERLANESAIGVTSLPADRAKLGEKIAQSERSFAAEVSFVGEERYLFVLEDTETGKLLGTSSIVASAG 80 (336)
T ss_pred cccCccccHH-HHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHHHhhcCCCCCccEEEEEEeCCCCcEEEEEeEEeccc
Confidence 7999999999 7999966654 2224556666555443211 23356788888866799999987665210
Q ss_pred ------------------------------eecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHH---cCCcEEEE
Q 031789 80 ------------------------------FLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHA---VGCYKVIL 126 (153)
Q Consensus 80 ------------------------------~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~---~g~~~~~~ 126 (153)
..++.....+|++++++|+||+-|.|+.|-+.-.-.+.+ .=.+++..
T Consensus 81 ~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~G~lLSr~RfLFiA~~~erF~~~viA 160 (336)
T TIGR03245 81 YGEPFYSYRNDTLIHASRELKVNNKIHVLYMCHELTGSSLLCSFYVDPRLRKTEAAELLSRARLLFMAAHRERFQSRIIV 160 (336)
T ss_pred CCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCchhHHHHHHHHHHHhhHhhhhhhhee
Confidence 112234567899999999999999998886654433332 22234444
Q ss_pred Ee----c-CCChhhhhhcCceeeC
Q 031789 127 DC----S-LGNKAFYEKCGLKQKG 145 (153)
Q Consensus 127 ~~----~-~~n~~~y~k~Gf~~~~ 145 (153)
.. + ..+-.||+.+|=+..+
T Consensus 161 EmrG~~De~G~SPFWd~lg~hFF~ 184 (336)
T TIGR03245 161 EIQGVQDDNGDSPFWDAIGRHFFD 184 (336)
T ss_pred eccCccCCCCCCccHHHhhccccC
Confidence 33 2 2224888888755443
No 78
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=98.57 E-value=2.7e-06 Score=53.90 Aligned_cols=91 Identities=15% Similarity=0.122 Sum_probs=60.1
Q ss_pred eEEEEEEeCCCCceEEEEEEEeeeeee-cCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCCh
Q 031789 55 HIVCVIEDDRSGKIIATGSIFIEKKFL-RNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGNK 133 (153)
Q Consensus 55 ~~~~~~~~~~~~~~vG~~~~~~~~~~~-~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~ 133 (153)
+++.++...++.++|+.+.+....... ....+...++-.|++|+|||+|+++.+-+.+.+..+..+ .-..+..++.+.
T Consensus 45 Y~l~~~~~KgT~~via~~~~~~~~~l~~~~d~pl~~~G~~w~~p~yRg~~~~kl~~~~~~~~~~~~~-~N~~~~~~~~~~ 123 (181)
T PF06852_consen 45 YWLVLTCLKGTDRVIATVHLIRFDPLNPSPDKPLQFIGFFWIDPEYRGKGIMKLQDDICMDELDSVD-DNSVAQGNVKMS 123 (181)
T ss_pred eEEEEEEEcCCCcEEEEEEEEEeccCCCCCCCCeEEEeeeeeCCcccCcchHHHHHHHHHHHhccCC-CceeeecCHHHH
Confidence 555555554357899988776433222 123567899999999999999999644444444444333 334455566667
Q ss_pred hhhhh-cCceeeCc
Q 031789 134 AFYEK-CGLKQKGI 146 (153)
Q Consensus 134 ~~y~k-~Gf~~~~~ 146 (153)
++|.+ .||...+.
T Consensus 124 ~~w~k~~G~~~~~h 137 (181)
T PF06852_consen 124 NFWHKMFGFDDYGH 137 (181)
T ss_pred HHHHHHhCCCCCcc
Confidence 88876 89887766
No 79
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=98.52 E-value=3.5e-06 Score=58.11 Aligned_cols=134 Identities=16% Similarity=0.186 Sum_probs=85.4
Q ss_pred EEeCcCCCcchHHHHHHhhhc---CCCCCChHHHHHHHHhhcc-------CCCceEEEEEEeCCCCceEEEEEEEeeee-
Q 031789 11 VRKLEITDKSKGFIELLQQLS---VCDSVSDKQFEERFLELNS-------YGDDHIVCVIEDDRSGKIIATGSIFIEKK- 79 (153)
Q Consensus 11 ir~~~~~D~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~vG~~~~~~~~~- 79 (153)
|||+..+|++ ++.++-.... .+-+.+.+.+.++++.... .....+++|.+|.++|++||++.+...-.
T Consensus 2 vRPv~~~Dl~-aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLEDt~tg~vvGts~I~a~vG~ 80 (336)
T TIGR03244 2 VRPVETSDLD-ALYQLAQSTGIGLTSLPANEDLLSARIERAEKTFSGELTRAEQGYLFVLEDTETGTVAGVSAIEAAVGL 80 (336)
T ss_pred cccCccccHH-HHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCeEEEEEeEEecccC
Confidence 7999999999 7999966654 2235566666665544321 13356788888866799999987664210
Q ss_pred -----------------------------eecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHc---CCcEEEEE
Q 031789 80 -----------------------------FLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAV---GCYKVILD 127 (153)
Q Consensus 80 -----------------------------~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~---g~~~~~~~ 127 (153)
..++.....+|++++++|+||+.|.|+.|-+.-.-.+.+. =.+++...
T Consensus 81 ~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~SElctLfL~p~~R~~~~G~LLSr~RfLFiA~~~erF~~~viAE 160 (336)
T TIGR03244 81 EEPFYNYRVGTVVHASKELGIYKALETLFLSNDLTGYSELCTLFLDPDYRKGGNGRLLSKSRFLFIAQFRERFSKKIIAE 160 (336)
T ss_pred CCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCeeeEEEEECHHHcCCcchhhHHHHHHHHHHhhHhhhhhhhhhh
Confidence 1122345678999999999999999988866544333322 22333332
Q ss_pred e----c-CCChhhhhhcCceeeC
Q 031789 128 C----S-LGNKAFYEKCGLKQKG 145 (153)
Q Consensus 128 ~----~-~~n~~~y~k~Gf~~~~ 145 (153)
. + ...-.||..+|=+..+
T Consensus 161 mrG~~De~G~SPFWd~lg~hFF~ 183 (336)
T TIGR03244 161 MRGVSDEQGRSPFWNALGRHFFS 183 (336)
T ss_pred hcCccCCCCCCchHHHhhccccC
Confidence 2 2 2224788888755443
No 80
>PF02799 NMT_C: Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain; InterPro: IPR022677 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the C-terminal region.; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 2WUU_A 1IYL_B 1NMT_B 1IYK_A ....
Probab=98.49 E-value=3.3e-05 Score=49.19 Aligned_cols=133 Identities=20% Similarity=0.126 Sum_probs=90.1
Q ss_pred EEEeCcCCCcchHHHHHHhhhcCC----CCCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeee-cCC
Q 031789 10 QVRKLEITDKSKGFIELLQQLSVC----DSVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFL-RNC 84 (153)
Q Consensus 10 ~ir~~~~~D~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~-~~~ 84 (153)
-+|+++++|++ ++..++.+.... +..+.+++.+|+.. .++-...+|.+++ +|+|-.++++..-+... ...
T Consensus 30 glR~m~~~Dv~-~v~~Ll~~yl~~f~l~~~fs~eev~Hw~lp---~~~Vv~syVve~~-~~~ITDf~SFY~Lpstvi~~~ 104 (190)
T PF02799_consen 30 GLRPMEEKDVP-QVTKLLNKYLKKFDLAPVFSEEEVKHWFLP---RKNVVYSYVVEDP-DGKITDFFSFYSLPSTVIGNP 104 (190)
T ss_dssp TEEE--GGGHH-HHHHHHHHHHTTSSEEEE--HHHHHHHHS----BTTTEEEEEEEET-TSEEEEEEEEEEEEEEESSSS
T ss_pred ccccCchhhHH-HHHHHHHHHHHhcccccccCHHHHHhhccc---CCCeEEEEEEecC-CCceeeEEEEeecceeecCCC
Confidence 38999999999 699998875432 34678888877655 2346777888876 47999999998765432 111
Q ss_pred -C---ceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCceeeCceeeeec
Q 031789 85 -G---KVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQKGIHMTMYF 152 (153)
Q Consensus 85 -~---~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~~~~~~~~~~ 152 (153)
. ..+++-. ++... -=-++|++.++-.|++.|++...+-.--+|..|.+.++|.+-.=...||+
T Consensus 105 k~~~l~aAY~fY-~~~~~----~~l~~Lm~DaLi~Ak~~gfDVFNaLd~mdN~~fL~~lKFg~GdG~L~YYL 171 (190)
T PF02799_consen 105 KHKTLKAAYSFY-YVATS----TRLKELMNDALILAKNEGFDVFNALDLMDNSSFLEDLKFGPGDGNLNYYL 171 (190)
T ss_dssp SSSEEEEEEEEE-EEESS----SHHHHHHHHHHHHHHHTTESEEEEESTTTGGGTTTTTT-EEEEEEEEEEE
T ss_pred Cccceeeeeeee-eeecC----CCHHHHHHHHHHHHHHcCCCEEehhhhccchhhHhhCCccCCCCCeEEEE
Confidence 1 2344422 22222 12368899999999999999888877888999999999998776777664
No 81
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=98.42 E-value=1.8e-05 Score=48.17 Aligned_cols=110 Identities=17% Similarity=0.085 Sum_probs=75.3
Q ss_pred eEEEeC-cCCCcchHHHHHHhhhcCC------CCCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeee
Q 031789 9 FQVRKL-EITDKSKGFIELLQQLSVC------DSVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFL 81 (153)
Q Consensus 9 ~~ir~~-~~~D~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~ 81 (153)
+.++.. .++|++ .+++++...... .+.+.+.+...+......+ ...++++..+ |++||+......
T Consensus 20 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~l~~~~~~--g~~va~~~~~~~---- 91 (142)
T PF13480_consen 20 VRFEVATDPADLE-AFYELYRESWARRHGGFAPPFSRDFFRDLLRSLAESG-RLRLFVLYDG--GEPVAFALGFRH---- 91 (142)
T ss_pred EEEEEeCCHHHHH-HHHHHHHHHHhhhhCCCCCcchHHHHHHHHHhhccCC-CEEEEEEEEC--CEEEEEEEEEEE----
Confidence 556554 466777 588877653221 1233333443444433333 5566667775 999998766632
Q ss_pred cCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEec
Q 031789 82 RNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCS 129 (153)
Q Consensus 82 ~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~ 129 (153)
+...+.....++|++++.+.|..|+..+++++.+.|+..+.+...
T Consensus 92 ---~~~~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~~g~~~~d~g~g 136 (142)
T PF13480_consen 92 ---GGTLYYWYGGYDPEYRKYSPGRLLLWEAIRWAIERGLRYFDFGGG 136 (142)
T ss_pred ---CCEEEEEEEEECHhhHhCCHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 446777778889999999999999999999999999988877653
No 82
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=98.30 E-value=7e-07 Score=52.34 Aligned_cols=44 Identities=23% Similarity=0.277 Sum_probs=34.5
Q ss_pred EEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCc
Q 031789 93 VVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGL 141 (153)
Q Consensus 93 ~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf 141 (153)
++|+|++||+|+|++|+..++++++..|+. .+..+..+|.+.||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~g~~-----~~~~~~~~~~~~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKRGIS-----LNRLALEVYEKNGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHcCce-----ehHHHHHHHHhcCC
Confidence 899999999999999999999999987765 22222455555555
No 83
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.26 E-value=8.3e-06 Score=58.50 Aligned_cols=129 Identities=16% Similarity=0.232 Sum_probs=90.7
Q ss_pred ccCceEEEeCcCCCcchHHHHHHhhhcCC----CCCChHHHHHHHHhhccCCCceEEEEEEeC---CCCceEEEEEEEee
Q 031789 5 EKNRFQVRKLEITDKSKGFIELLQQLSVC----DSVSDKQFEERFLELNSYGDDHIVCVIEDD---RSGKIIATGSIFIE 77 (153)
Q Consensus 5 ~~~~~~ir~~~~~D~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~vG~~~~~~~ 77 (153)
+.+.+++++....++++ +.++.++.... ..++++.+. ++...+ ...++-+.-+ .|+-+||++.+..
T Consensus 410 Lem~l~vs~~de~~i~R-IsQLtqkTNQFnlTtkRy~e~dV~----~~~~~~-~~li~sv~l~DKfgDnGiigvviv~k- 482 (574)
T COG3882 410 LEMRLTVSKFDEVNIPR-ISQLTQKTNQFNLTTKRYNEEDVR----QMQEDP-NFLIFSVSLKDKFGDNGIIGVVIVEK- 482 (574)
T ss_pred heEEEEEeeccccCcHH-HHHHhhcccceeechhhhcHHHHH----HHhhCC-CeEEEEEEeccccccCceEEEEEEEe-
Confidence 34567889999999995 88887764321 234444443 333333 3344333321 1466889888873
Q ss_pred eeeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEe--cCCC---hhhhhhcCceeeCc
Q 031789 78 KKFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDC--SLGN---KAFYEKCGLKQKGI 146 (153)
Q Consensus 78 ~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~--~~~n---~~~y~k~Gf~~~~~ 146 (153)
....+.|..+...=..=|+++-.+|+..+++.|.+.|+..+.... ...| ..||+++||+..+.
T Consensus 483 ------k~~~w~IDt~lmSCRVlgRkvE~~l~~~~~e~A~~~gi~tir~~Y~pt~kN~pv~~FyE~mgf~l~~e 550 (574)
T COG3882 483 ------KESEWFIDTFLMSCRVLGRKVEQRLMNSLEEQALSEGINTIRGYYIPTEKNAPVSDFYERMGFKLKGE 550 (574)
T ss_pred ------cCCeEEhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeEecccccCCcHHHHHHHhccccccc
Confidence 245678887777777789999999999999999999999888766 4566 39999999996654
No 84
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=98.25 E-value=1.6e-05 Score=53.19 Aligned_cols=80 Identities=9% Similarity=0.097 Sum_probs=62.9
Q ss_pred CCceEEEEEEEeee------------eeec------------CCCceeEEeeEEeCcCcccC--------c---------
Q 031789 65 SGKIIATGSIFIEK------------KFLR------------NCGKVGHIEDVVVDASARGM--------Q--------- 103 (153)
Q Consensus 65 ~~~~vG~~~~~~~~------------~~~~------------~~~~~~~i~~~~v~p~~rg~--------G--------- 103 (153)
+|++||++.+.... .... .....++++.++|+|++|++ |
T Consensus 65 ~g~vvG~~RLl~t~~~~p~~~~p~e~~~~~~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r~r~~~~~~~~~~~~~~~~~~ 144 (241)
T TIGR03694 65 TGTFVGCVRLVLPNSSDPDQPFPFEKHCSHSLDGLFLDPRRLPRSRIAEVSRLAVSKDFRRRKGEKLKPSGVGVIETEAP 144 (241)
T ss_pred CCCEEEEEEEeccccccccccccHHHHhccccchhhcCccccCCCceEEeehheECHhHhCCcccccccccccccccccc
Confidence 48999999888531 0000 12468999999999999974 2
Q ss_pred -----------hHHHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCceee
Q 031789 104 -----------LGKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQK 144 (153)
Q Consensus 104 -----------ig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~~ 144 (153)
+...|+..+.+++.++|+..++..+.+.-.+++++.||...
T Consensus 145 ~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~~l~r~l~r~G~~~~ 196 (241)
T TIGR03694 145 FSESERRRFPHIPLGLYLGLIALSSANGITHWYAIMEPRLARLLSRFGIQFR 196 (241)
T ss_pred cchhhcccCchHHHHHHHHHHHHHHHCCCcEEEEEeCHHHHHHHHHhCCceE
Confidence 45679999999999999999999888877899999997643
No 85
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=98.21 E-value=2.2e-05 Score=50.20 Aligned_cols=89 Identities=12% Similarity=0.175 Sum_probs=63.8
Q ss_pred eEEEEEEeCCCCceEEEEEEEeeee---------------eecCCCceeEEeeEEeCcCccc------CchHHHHHHHHH
Q 031789 55 HIVCVIEDDRSGKIIATGSIFIEKK---------------FLRNCGKVGHIEDVVVDASARG------MQLGKKIIKFLT 113 (153)
Q Consensus 55 ~~~~~~~~~~~~~~vG~~~~~~~~~---------------~~~~~~~~~~i~~~~v~p~~rg------~Gig~~ll~~~~ 113 (153)
...+++.++ |+++|++.+..... .......++++..++|+|+.++ .-+...|+..+.
T Consensus 45 ~~ylv~~~~--g~v~g~~RLlptt~p~ML~~~F~~ll~~~~~p~~~~vwE~SRf~v~~~~~~~~~~~~~~~~~~L~~~~~ 122 (182)
T PF00765_consen 45 AVYLVALDD--GRVVGCARLLPTTGPYMLSDVFPHLLPDGPAPRSPDVWELSRFCVDPDRRRSRAGSRSPVTMELLLGMV 122 (182)
T ss_dssp -EEEEEEET--TEEEEEEEEEETTS--HHHHCTGGGHTTS---SSTTEEEEEEEEE-HCCCHHCHSCC-THHHHHHHHHH
T ss_pred CeEEEEEEC--CEEEEEeeeccCCCcchhhhHHHHHhCCCCCCCCCcceeeeEEEEcccccccccccccHHHHHHHHHHH
Confidence 334445554 99999999986311 1112257899999999998542 246678999999
Q ss_pred HHHHHcCCcEEEEEecCCChhhhhhcCceeeC
Q 031789 114 DHAHAVGCYKVILDCSLGNKAFYEKCGLKQKG 145 (153)
Q Consensus 114 ~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~~~ 145 (153)
++|.++|+..++..+...-.+++++.||...-
T Consensus 123 e~a~~~gi~~~v~V~~~~~~r~l~r~G~~~~~ 154 (182)
T PF00765_consen 123 EFALSNGIRHIVGVVDPAMERILRRAGWPVRR 154 (182)
T ss_dssp HHHHCTT-SEEEEEEEHHHHHHHHHCT-EEEE
T ss_pred HHHHHCCCCEEEEEEChHHHHHHHHcCCceEE
Confidence 99999999999998887778999999998654
No 86
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=98.16 E-value=6e-05 Score=49.27 Aligned_cols=80 Identities=11% Similarity=0.113 Sum_probs=61.7
Q ss_pred CCceEEEEEEEeeeee---------------ecCCCceeEEeeEEeCcCcccC---c----hHHHHHHHHHHHHHHcCCc
Q 031789 65 SGKIIATGSIFIEKKF---------------LRNCGKVGHIEDVVVDASARGM---Q----LGKKIIKFLTDHAHAVGCY 122 (153)
Q Consensus 65 ~~~~vG~~~~~~~~~~---------------~~~~~~~~~i~~~~v~p~~rg~---G----ig~~ll~~~~~~~~~~g~~ 122 (153)
+|+++|++.+...... .......++++.++|+|++++. + +...|+..+.+++..+|+.
T Consensus 62 ~g~vvG~~RLlptt~p~ml~~~fp~l~~~~~~~~~~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~ 141 (207)
T PRK13834 62 SGRVAGCARLLPAIGPTMLAQVFPQLLPAGRLNAHPAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGIIEWSMANGYT 141 (207)
T ss_pred CCeEEEEEecccCCCcchhhhhcHHhcCCCCCCCCCCEEEEeeeEEcccccccccccccCHHHHHHHHHHHHHHHHCCCC
Confidence 4899999988753110 1123568999999999986322 2 5568999999999999999
Q ss_pred EEEEEecCCChhhhhhcCceee
Q 031789 123 KVILDCSLGNKAFYEKCGLKQK 144 (153)
Q Consensus 123 ~~~~~~~~~n~~~y~k~Gf~~~ 144 (153)
.++..+.+.-.++++++||...
T Consensus 142 ~~~~v~~~~~~r~l~r~G~~~~ 163 (207)
T PRK13834 142 EIVTATDLRFERILARAGWPMQ 163 (207)
T ss_pred EEEEEECHHHHHHHHHcCCCeE
Confidence 9998888877799999998754
No 87
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=98.13 E-value=0.00039 Score=42.99 Aligned_cols=121 Identities=20% Similarity=0.225 Sum_probs=70.3
Q ss_pred ccCceEEEeCcCCCcchHHHH---HHhhhcCCC-------CCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEE
Q 031789 5 EKNRFQVRKLEITDKSKGFIE---LLQQLSVCD-------SVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSI 74 (153)
Q Consensus 5 ~~~~~~ir~~~~~D~~~~~~~---~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~ 74 (153)
++.+++...++.+|.. ++.+ ++++....+ .++.+-+ .|....-.....+.+.+-..+ ++++||+++.
T Consensus 20 LP~gF~W~~~dl~d~~-~l~ely~lL~~nYVEDdd~~fRf~YS~efL-~WaL~pPg~~~~whiGVR~~~-~~kLvgfIsa 96 (162)
T PF01233_consen 20 LPDGFEWSTLDLNDDE-ELKELYELLNENYVEDDDNMFRFDYSKEFL-KWALKPPGWKKEWHIGVRVKS-SKKLVGFISA 96 (162)
T ss_dssp -STTEEEEE--TTSHH-HHHHHHHHHHHHSSBTTTSSEEE---HHHH-HHHHTSTT--GGGEEEEEETT-TTEEEEEEEE
T ss_pred CCCCCEEEecCCCCHH-HHHHHHHHHHhcCccCCcceEEeeCCHHHH-hheeeCcCCccceEEEEEECC-CCEEEEEEcc
Confidence 5667888888776655 3444 444433222 2232222 222211111123455555543 5999999887
Q ss_pred EeeeeeecC-CCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEe
Q 031789 75 FIEKKFLRN-CGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDC 128 (153)
Q Consensus 75 ~~~~~~~~~-~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~ 128 (153)
....-...+ .-...+|.-++|++..|.++++--|++.+...+...|+....-++
T Consensus 97 ip~~irv~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn~~gI~qAvyTa 151 (162)
T PF01233_consen 97 IPATIRVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVNLQGIWQAVYTA 151 (162)
T ss_dssp EEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT--EEEEEE
T ss_pred ceEEEEEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhhhcCceeeeeec
Confidence 754322222 235789999999999999999999999999999888887654443
No 88
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=97.98 E-value=1.1e-05 Score=57.62 Aligned_cols=56 Identities=18% Similarity=0.333 Sum_probs=50.4
Q ss_pred CcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCceeeCceeeee
Q 031789 96 DASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQKGIHMTMY 151 (153)
Q Consensus 96 ~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~~~~~~~~~ 151 (153)
.-.||.+|+|++||+.+++.|++.+..++.+...-..+.+|+|+||+..|-.|...
T Consensus 459 ~~~~QH~G~G~~L~~~AE~ia~ee~~~ki~viSgiG~ReYy~k~GY~~~gpYm~K~ 514 (515)
T COG1243 459 EDEWQHRGYGRELLEEAERIAREEGAKKILVISGIGVREYYRKLGYELDGPYMSKR 514 (515)
T ss_pred cchhhcccHHHHHHHHHHHHHHhhccccEEEEecccHHHHHHHhCccccCCccccc
Confidence 57899999999999999999999999999888888889999999999998776543
No 89
>COG3375 Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=0.00029 Score=45.85 Aligned_cols=117 Identities=14% Similarity=0.058 Sum_probs=72.4
Q ss_pred ceEEEeCc-CCCcchHHHHHHhhhcCCCCCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeeecCCCc
Q 031789 8 RFQVRKLE-ITDKSKGFIELLQQLSVCDSVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFLRNCGK 86 (153)
Q Consensus 8 ~~~ir~~~-~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~ 86 (153)
.+.+|.++ +.++. +..++.......... .......+..+.... .. ++-+..+ +|++||..-.... ......
T Consensus 2 ~vvvrrl~dp~el~-~~~dV~~~aWg~~d~-~~~~~d~i~al~~~G-Gl-vlgAf~~-dg~lVGls~G~pg---~r~g~~ 73 (266)
T COG3375 2 KVVVRRLTDPAELD-EAEDVQASAWGSEDR-DGAPADTIRALRYHG-GL-VLGAFSA-DGRLVGLSYGYPG---GRGGSL 73 (266)
T ss_pred ceeEEecCCHHHHH-HHHHHHHHHhCcccc-ccchHHHHHHHHhcC-Ce-EEEEEcC-CCcEEEEEeccCC---cCCCce
Confidence 35566664 55666 566665554433211 112223333332222 33 3334443 4799998655531 011122
Q ss_pred eeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCC
Q 031789 87 VGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGN 132 (153)
Q Consensus 87 ~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n 132 (153)
..+-+.+.|.|++|++|+|-+|=..--+++.++|+..+..+.+|-|
T Consensus 74 y~ySH~~gV~e~~k~sglg~aLK~~Qre~a~~~G~tli~WTfDPl~ 119 (266)
T COG3375 74 YLYSHMLGVREEVKGSGLGVALKMKQRERALSMGYTLIAWTFDPLN 119 (266)
T ss_pred eeeeeehhccccccccchhhhhHHHHHHHHHhcCeeeEEEecccch
Confidence 5667789999999999999999888888999999999998887655
No 90
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=97.94 E-value=1.6e-05 Score=42.32 Aligned_cols=30 Identities=17% Similarity=0.240 Sum_probs=26.1
Q ss_pred eeEEeeEEeCcCcccCchHHHHHHHHHHHH
Q 031789 87 VGHIEDVVVDASARGMQLGKKIIKFLTDHA 116 (153)
Q Consensus 87 ~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~ 116 (153)
...|..+||+|.+|++|||++||+.+.+..
T Consensus 5 ~~GI~RIWV~~~~RR~GIAt~Lld~ar~~~ 34 (70)
T PF13880_consen 5 VCGISRIWVSPSHRRKGIATRLLDAARENF 34 (70)
T ss_pred EEEeEEEEeChhhhhhhHHHHHHHHHHHhc
Confidence 356788999999999999999999988753
No 91
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=97.92 E-value=0.00026 Score=49.03 Aligned_cols=135 Identities=16% Similarity=0.108 Sum_probs=92.1
Q ss_pred eEEEeCcCCCcchHHHHHHhhhc----CCCCCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeee--ec
Q 031789 9 FQVRKLEITDKSKGFIELLQQLS----VCDSVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKF--LR 82 (153)
Q Consensus 9 ~~ir~~~~~D~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~--~~ 82 (153)
--+|++++.|++ ++.+++.... ..+..+.+++.+++.-. ++-...+|+++. +|.|-+++++..-+.. .+
T Consensus 261 ~G~R~me~kDvp-~V~~Ll~~yl~qf~la~~f~~eev~Hwf~p~---e~VV~syVvesp-~g~ITDF~SFy~lpsTv~~~ 335 (421)
T KOG2779|consen 261 PGLREMEEKDVP-AVFRLLRNYLKQFELAPVFDEEEVEHWFLPR---ENVVYSYVVESP-NGKITDFCSFYSLPSTVMGN 335 (421)
T ss_pred CCcccccccchH-HHHHHHHHHHHheecccccCHHHhHhhcccc---cceEEEEEEECC-CCcccceeeEEeccccccCC
Confidence 347999999999 6999988643 23456777777766543 235566777764 5889999998865431 12
Q ss_pred CCCceeEEeeEE--eCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCceeeCceeeeec
Q 031789 83 NCGKVGHIEDVV--VDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQKGIHMTMYF 152 (153)
Q Consensus 83 ~~~~~~~i~~~~--v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~~~~~~~~~~ 152 (153)
..........++ +..+ -=-.+|+.-++-.|+..|++...+..-.+|..|+++++|-+-.-...||+
T Consensus 336 ~~~ktl~aaYlyY~v~~~----t~~~~lvnDalilak~~gfDVFNAld~meN~~fl~~LkFg~GdG~l~YYL 403 (421)
T KOG2779|consen 336 PKYKTLQAAYLYYNVATS----TPLLQLVNDALILAKQKGFDVFNALDLMENESFLKDLKFGPGDGNLQYYL 403 (421)
T ss_pred CCcceeeeeeEEEeccCC----ccHHHHHHHHHHHHHhcCCceeehhhhhhhhhHHHhcCcCcCCCceeEEE
Confidence 222222222222 2222 11357888888889999999887777788999999999998877777775
No 92
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=97.92 E-value=0.00011 Score=42.89 Aligned_cols=72 Identities=13% Similarity=0.163 Sum_probs=50.0
Q ss_pred CceEEEEEEEeeeeeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEE-EEEecCCChhhhhhcCc
Q 031789 66 GKIIATGSIFIEKKFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKV-ILDCSLGNKAFYEKCGL 141 (153)
Q Consensus 66 ~~~vG~~~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~-~~~~~~~n~~~y~k~Gf 141 (153)
|.+||++.+.-.+.. .......+..+.+...|||+|+|++..+++...++ |...+ .+--|..+++||++.-.
T Consensus 46 ~~~igf~l~L~~~~~--~~~iD~~~~efFIi~k~~~~GvGR~aaK~If~~~~--g~w~Va~i~EN~PA~~fwK~~~~ 118 (143)
T COG5628 46 GLPVGFALVLDLAHS--PTPIDRAVAEFFIVRKHRRRGVGRAAAKAIFGSAW--GVWQVATVRENTPARAFWKRVAE 118 (143)
T ss_pred CceeeeeeeecccCC--CCcccccchheEeeehhhccchhHHHHHHHHHHhh--ceEEEEEeccCChhHHHHHhhhc
Confidence 899999877633221 22345677888999999999999999999987654 43332 22226666788877544
No 93
>COG3138 AstA Arginine/ornithine N-succinyltransferase beta subunit [Amino acid transport and metabolism]
Probab=97.80 E-value=0.00026 Score=47.60 Aligned_cols=101 Identities=18% Similarity=0.237 Sum_probs=64.5
Q ss_pred eEEEeCcCCCcchHHHHHHhhhcC---CCCCChHHHHHHHHhh-------ccCCCceEEEEEEeCCCCceEEEEEEEeee
Q 031789 9 FQVRKLEITDKSKGFIELLQQLSV---CDSVSDKQFEERFLEL-------NSYGDDHIVCVIEDDRSGKIIATGSIFIEK 78 (153)
Q Consensus 9 ~~ir~~~~~D~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~ 78 (153)
+.+||++..|++ ++.++-.+... .-+.+++.+..++... ...+...++++.+|.+.|+++|...+...-
T Consensus 2 lvvRP~~~aDl~-al~~LA~~sg~G~TsLP~de~~L~~Ri~~se~sf~~~~~~ge~~Y~fVLEDsetG~VvG~saI~a~v 80 (336)
T COG3138 2 LVVRPVERADLE-ALMELAVKTGVGLTSLPADEATLRARIERSEKSFQGELPPGEAGYLFVLEDSETGTVVGISAIEAAV 80 (336)
T ss_pred cccccccccCHH-HHHHHHHhcCCCcccCCCCHHHHHHHHHHHHHHHhcccCCCCccEEEEEEecCCceEEeEEEEEEee
Confidence 568999999999 79998665422 1133444444443322 223446677888885579999987555311
Q ss_pred e------------------------------eecCCCceeEEeeEEeCcCcccCchHHHHHH
Q 031789 79 K------------------------------FLRNCGKVGHIEDVVVDASARGMQLGKKIIK 110 (153)
Q Consensus 79 ~------------------------------~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~ 110 (153)
. ..++...+.++++++++|++|.-+.|+.|-+
T Consensus 81 Gl~~PfYsyRv~tlvhaS~~L~v~~~i~~L~L~Nd~TG~SEl~sLFl~pd~Rkg~nG~Llsr 142 (336)
T COG3138 81 GLNDPFYSYRVGTLVHASPELNVYNEIPTLFLSNDLTGNSELCTLFLDPDWRKGGNGRLLSK 142 (336)
T ss_pred ccCCccceeeeeeeeecCccccccccceeEEEeccCcCchhhhheeecHHHhcccchhhhhh
Confidence 0 1122345567889999999998777765543
No 94
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.74 E-value=0.00079 Score=43.42 Aligned_cols=81 Identities=14% Similarity=0.136 Sum_probs=62.1
Q ss_pred CCceEEEEEEEeeee---------------eecCCCceeEEeeEEeCc--CcccC---c-hHHHHHHHHHHHHHHcCCcE
Q 031789 65 SGKIIATGSIFIEKK---------------FLRNCGKVGHIEDVVVDA--SARGM---Q-LGKKIIKFLTDHAHAVGCYK 123 (153)
Q Consensus 65 ~~~~vG~~~~~~~~~---------------~~~~~~~~~~i~~~~v~p--~~rg~---G-ig~~ll~~~~~~~~~~g~~~ 123 (153)
+|+++|++.+..... ........++...++|++ .-|+. + ++..|+.-+++++.+.|+..
T Consensus 61 ~g~I~G~~RlLptt~P~mL~~vF~~Ll~~~~~P~~p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~ie~a~~~G~~~ 140 (209)
T COG3916 61 DGRIVGCVRLLPTTGPYMLTDVFPALLEGGPPPSSPGVWESSRFAVDKPSARRAAGGVSPAAYELFAGMIEYALARGITG 140 (209)
T ss_pred CCcEEEEEEeccCCCcchhhhhhHHHhcCCCCCCCCCeEEEeeeeeccccchhhcCCccHHHHHHHHHHHHHHHHcCCce
Confidence 599999998875321 111224788999999987 33333 2 36689999999999999999
Q ss_pred EEEEecCCChhhhhhcCceeeC
Q 031789 124 VILDCSLGNKAFYEKCGLKQKG 145 (153)
Q Consensus 124 ~~~~~~~~n~~~y~k~Gf~~~~ 145 (153)
++..+...-.+.+++.||....
T Consensus 141 IvtVt~~~meril~r~Gw~~~r 162 (209)
T COG3916 141 IVTVTDTGMERILRRAGWPLTR 162 (209)
T ss_pred EEEEEchHHHHHHHHcCCCeEE
Confidence 9998888888999999997654
No 95
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=97.72 E-value=0.0031 Score=44.29 Aligned_cols=130 Identities=15% Similarity=0.052 Sum_probs=84.5
Q ss_pred ceEEEeCcCCCcchHHHHHHhhhcCC---CCCChHHHHHHHHhhccCCCceEEEEEE-eCCCCceEEEEEEEeeeeeecC
Q 031789 8 RFQVRKLEITDKSKGFIELLQQLSVC---DSVSDKQFEERFLELNSYGDDHIVCVIE-DDRSGKIIATGSIFIEKKFLRN 83 (153)
Q Consensus 8 ~~~ir~~~~~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vG~~~~~~~~~~~~~ 83 (153)
+++++. .+|++ ++.+++...... +..+.+.+...++.. +....++++. .+ |++||.+.+...
T Consensus 151 Gv~v~~--~~~l~-~F~~l~~~t~~r~g~p~~~~~~f~~l~~~~---~~~~~l~~a~~~~--g~~va~~l~~~~------ 216 (330)
T TIGR03019 151 GLTVTV--DGDLD-RFYDVYAENMRDLGTPVFSRRYFRLLKDVF---GEDCEVLTVRLGD--GVVASAVLSFYF------ 216 (330)
T ss_pred CeEEEE--CCcHH-HHHHHHHHHHhcCCCCCCCHHHHHHHHHhc---ccCEEEEEEEeCC--CCEEEEEEEEEe------
Confidence 466665 35688 688877753221 234455555444433 2234455666 44 888887665532
Q ss_pred CCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCC---hhhhhhcCceeeCceeeeec
Q 031789 84 CGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGN---KAFYEKCGLKQKGIHMTMYF 152 (153)
Q Consensus 84 ~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n---~~~y~k~Gf~~~~~~~~~~~ 152 (153)
+...+....+.++++++.+-+..|.-.++++|.++|+....+.....+ .+|=++.||++.....+++.
T Consensus 217 -~~~~~~~~~g~~~~~~~~~~~~lL~w~~i~~a~~~G~~~fDfG~s~~~~G~~~FK~~~G~~~~~l~~~~~~ 287 (330)
T TIGR03019 217 -RDEVLPYYAGGLREARDVAANDLMYWELMRRACERGLRVFDFGRSKRGTGPFKFKKNWGFEPQPLHYEYLL 287 (330)
T ss_pred -CCEEEEEeccChHHHHhhChHHHHHHHHHHHHHHCCCcEEEcCCCCCCCccHHHHhcCCCeeccceEEEEc
Confidence 222222234567999999999999999999999999999888764333 35667789999888877664
No 96
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=97.68 E-value=0.00083 Score=39.47 Aligned_cols=61 Identities=18% Similarity=0.293 Sum_probs=40.2
Q ss_pred eEEEEEEeCC---CCceEEEEEEEeeeeeecCC-------CceeEEeeEEeCcCcccCchHHHHHHHHHHH
Q 031789 55 HIVCVIEDDR---SGKIIATGSIFIEKKFLRNC-------GKVGHIEDVVVDASARGMQLGKKIIKFLTDH 115 (153)
Q Consensus 55 ~~~~~~~~~~---~~~~vG~~~~~~~~~~~~~~-------~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~ 115 (153)
+.+++..+++ .+.++|++-+....-+..+. .+...+-.++|+++.|++|+|++|++.+++.
T Consensus 4 ~~~Yll~d~~~~~~g~viG~LKVG~K~Lfl~d~~g~~~e~~~~~cvLDFyVhes~QR~G~Gk~LF~~ML~~ 74 (120)
T PF05301_consen 4 QVLYLLKDSEAGGKGAVIGFLKVGYKKLFLLDERGQHREIEPLLCVLDFYVHESRQRRGYGKRLFDHMLQE 74 (120)
T ss_pred eEEEEEEecCCCCCceEEEEEEEeeeeEEEEcCCCCEEEecccceeeeEEEEeceeccCchHHHHHHHHHH
Confidence 4444554431 36788887555433322221 2233667899999999999999999999864
No 97
>PRK14852 hypothetical protein; Provisional
Probab=97.58 E-value=0.00039 Score=54.64 Aligned_cols=137 Identities=10% Similarity=0.034 Sum_probs=90.2
Q ss_pred ceEEEeCc-CCCcchHHHHHHhhhcCCCCCC-hHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeee---ee-
Q 031789 8 RFQVRKLE-ITDKSKGFIELLQQLSVCDSVS-DKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKK---FL- 81 (153)
Q Consensus 8 ~~~ir~~~-~~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~---~~- 81 (153)
...+|.++ .+|.. ++..|..+.+....+. +......+..+...+ ...++++... ++++|+.++..+.. ..
T Consensus 28 r~~~r~Aet~~e~~-~~~~L~~~~Y~~~Gy~~~~ps~~~~~~~~~lp-~t~~~i~k~~--~~~l~T~t~~~ds~~~Gl~~ 103 (989)
T PRK14852 28 RPAIKIAETPDEYT-RAFRLVYEEYIRSGYLKPHPSRMYYNVWSILP-ATSVFIFKSY--HDVLCTLTHIPDSGLFGLPM 103 (989)
T ss_pred CcceeecCCHHHHH-HHHHHHHHHHHHcCCCCcCcccccCCccccCC-cceEEEeccC--CcEEEEEEEecCCcccCcCH
Confidence 35677774 56677 5888777654332111 111111112222222 4455666654 67777776665422 00
Q ss_pred ------------cCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCChhhhhh-cCceeeCcee
Q 031789 82 ------------RNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEK-CGLKQKGIHM 148 (153)
Q Consensus 82 ------------~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k-~Gf~~~~~~~ 148 (153)
......+++..++++|+.|.+-+--.+++.+..++...++.-+.+.|++.=..||++ +||++.+...
T Consensus 104 D~lf~~eLd~lr~~Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~~~~dd~~i~VnPkH~~FY~r~l~f~~ig~~r 183 (989)
T PRK14852 104 DTLYKPEVDALRAQGRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMMSEVDDILVTVNPKHVKFYTDIFLFKPFGEVR 183 (989)
T ss_pred HHHHHHHHHHHHHcCCeEEeeehheechhhcccchhHHHHHHHHHHHHHcCCCeEEEEECcchHHHHHHHhCCccccccc
Confidence 112467899999999998887777788888888888789999999999998999996 8999998653
No 98
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=97.28 E-value=0.0028 Score=40.46 Aligned_cols=49 Identities=12% Similarity=0.051 Sum_probs=34.8
Q ss_pred CceEEEEEEEeeeeeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcC
Q 031789 66 GKIIATGSIFIEKKFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVG 120 (153)
Q Consensus 66 ~~~vG~~~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g 120 (153)
-.+||+-+=.. .......+.-+.|.|.||++|+|+.|++..-+.++..+
T Consensus 65 ~h~vGyFSKEk------~s~~~~NLsCIl~lP~yQrkGyG~~LI~fSY~LSr~e~ 113 (188)
T PF01853_consen 65 FHIVGYFSKEK------ESWDNNNLSCILTLPPYQRKGYGRFLIDFSYELSRREG 113 (188)
T ss_dssp EEEEEEEEEES------S-TT-EEESEEEE-GGGTTSSHHHHHHHHHHHHHHHTT
T ss_pred ceeEEEEEEEe------cccCCeeEeehhhcchhhhcchhhhhhhhHHHHhhccC
Confidence 35777754331 11223566678899999999999999999999988775
No 99
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=97.27 E-value=0.00042 Score=48.15 Aligned_cols=53 Identities=19% Similarity=0.296 Sum_probs=45.9
Q ss_pred CcccCchHHHHHHHHHHHHHHc-CCcEEEEEecCCChhhhhhcCceeeCceeee
Q 031789 98 SARGMQLGKKIIKFLTDHAHAV-GCYKVILDCSLGNKAFYEKCGLKQKGIHMTM 150 (153)
Q Consensus 98 ~~rg~Gig~~ll~~~~~~~~~~-g~~~~~~~~~~~n~~~y~k~Gf~~~~~~~~~ 150 (153)
.||.||+|+.||..++..|++. |-.++.+.....-..+|.|+||+..|-.|..
T Consensus 498 KfQHQG~GtLLmeEAERIAr~EHgS~KiavISGVGtR~YY~klGY~LdGPYM~K 551 (554)
T KOG2535|consen 498 KFQHQGFGTLLMEEAERIAREEHGSGKIAVISGVGTRNYYRKLGYELDGPYMVK 551 (554)
T ss_pred hhhhcchhhHHHHHHHHHHHHhcCCCceEEEeccchHHHHHhhCeeecChhHhh
Confidence 6899999999999999999876 8888877777777899999999998876643
No 100
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=97.15 E-value=0.0011 Score=50.19 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=29.1
Q ss_pred eeEEeeEEeCcCcccCchHHHHHHHHHHHHHHc
Q 031789 87 VGHIEDVVVDASARGMQLGKKIIKFLTDHAHAV 119 (153)
Q Consensus 87 ~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~ 119 (153)
.+.|..++|+|+|++.|+|++.++.+.++....
T Consensus 614 GaRIVRIAvhP~y~~MGYGsrAvqLL~~y~eG~ 646 (1011)
T KOG2036|consen 614 GARIVRIAVHPEYQKMGYGSRAVQLLTDYFEGK 646 (1011)
T ss_pred CceEEEEEeccchhccCccHHHHHHHHHHHhcc
Confidence 467889999999999999999999999987643
No 101
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=97.05 E-value=0.045 Score=36.72 Aligned_cols=58 Identities=19% Similarity=0.199 Sum_probs=45.3
Q ss_pred CCceEEEEEEEeeeeeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEec
Q 031789 65 SGKIIATGSIFIEKKFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCS 129 (153)
Q Consensus 65 ~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~ 129 (153)
+|++||++.+-..+ +...-+ ..+-||++-.+++|+-.+-.-+++|++.|...+++.-.
T Consensus 152 ~g~LiaVav~D~l~------d~lSAV-Y~FyDPd~~~~SLG~~~iL~qI~~ak~~gl~y~YLGY~ 209 (240)
T PRK01305 152 DGKLVAVAVTDVLD------DGLSAV-YTFYDPDEEHRSLGTFAILWQIELAKRLGLPYVYLGYW 209 (240)
T ss_pred CCeEEEEEEEeccC------CceeeE-EEeeCCCccccCCHHHHHHHHHHHHHHcCCCeEeeeEE
Confidence 49999998776432 111122 45579999999999999999999999999999998764
No 102
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=96.99 E-value=0.0084 Score=34.44 Aligned_cols=58 Identities=17% Similarity=0.117 Sum_probs=43.5
Q ss_pred CceEEEEEEEeeeeeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCC
Q 031789 66 GKIIATGSIFIEKKFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGN 132 (153)
Q Consensus 66 ~~~vG~~~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n 132 (153)
+...|++.+.... .....++++-++|.|+.||+|+|..++..+.+. ...+...+.++|
T Consensus 17 e~y~~~aIvt~~~----~~~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d-----~~~L~Wrsr~~n 74 (99)
T cd04264 17 EGYNAAAIVTYEG----VNNGVPYLDKFAVSSSAQGEGTSDALWRRLRRD-----FPKLFWRSRKTN 74 (99)
T ss_pred CCceEEEEEeccC----CCCCceEEEEEEEchhhhhcChHHHHHHHHHhh-----CCceEEEeCCCC
Confidence 5677777775321 124689999999999999999999999988765 466667765555
No 103
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=96.94 E-value=0.033 Score=33.58 Aligned_cols=58 Identities=21% Similarity=0.145 Sum_probs=44.4
Q ss_pred CCceEEEEEEEeeeeeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEec
Q 031789 65 SGKIIATGSIFIEKKFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCS 129 (153)
Q Consensus 65 ~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~ 129 (153)
+|++||++.+-..++ ...-+ ..+-||++..+++|+-.+-.-+++|++.|...+++.-.
T Consensus 47 ~~kLiav~v~D~l~~------glSaV-Y~fyDPd~~~~SlG~~~iL~eI~~a~~~~l~y~YLGY~ 104 (128)
T PF04377_consen 47 DGKLIAVAVVDILPD------GLSAV-YTFYDPDYSKRSLGTYSILREIELARELGLPYYYLGYW 104 (128)
T ss_pred CCeEEEEEEeecccc------hhhhe-eeeeCCCccccCcHHHHHHHHHHHHHHcCCCEEeeCeE
Confidence 499999977764321 11111 33469999999999999999999999999999998663
No 104
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=96.85 E-value=0.042 Score=38.55 Aligned_cols=116 Identities=19% Similarity=0.187 Sum_probs=69.1
Q ss_pred ccCceEEEeCcCCCcchHHHHHHhhhcCCC-----CCChHHHHHHHHhhccC----CCceEEEEEEeCCCCceEEEEEEE
Q 031789 5 EKNRFQVRKLEITDKSKGFIELLQQLSVCD-----SVSDKQFEERFLELNSY----GDDHIVCVIEDDRSGKIIATGSIF 75 (153)
Q Consensus 5 ~~~~~~ir~~~~~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~vG~~~~~ 75 (153)
++..+....+..+|.. ++-+++.-+.... ....-.+...+.+|.-. ...+.+.+-..+ ++++||+++..
T Consensus 77 lp~gf~W~tldv~~~~-~l~el~~lL~enyVEd~~~m~rf~Ys~eFl~Wal~~pg~~~~WHiGVRv~~-s~kLVaFIsai 154 (421)
T KOG2779|consen 77 LPTGFRWETLDVSDFK-DLEELYNLLNENYVEDDDSMFRFDYSPEFLKWALQPPGWKKEWHIGVRVKS-SKKLVAFISAI 154 (421)
T ss_pred CCCCceeeccCCccHh-HHHHHHhhcccCCCCccccchhhhccHHHHHhhhcCCCCccceEEEEEEec-CCceEEEEecc
Confidence 4455666666666666 4666554332221 01111112222222221 124555554443 58999998776
Q ss_pred eeeeee-cCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCc
Q 031789 76 IEKKFL-RNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCY 122 (153)
Q Consensus 76 ~~~~~~-~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~ 122 (153)
...-.. ......+.|..++|+...|+++++=-|++.+...+.-.|+-
T Consensus 155 P~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRRvnl~gIf 202 (421)
T KOG2779|consen 155 PATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRRVNLEGIF 202 (421)
T ss_pred ccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHHHHhhhhhhh
Confidence 432211 22345789999999999999999999999999888766654
No 105
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=96.85 E-value=0.0066 Score=41.29 Aligned_cols=50 Identities=14% Similarity=0.077 Sum_probs=36.2
Q ss_pred CCceEEEEEEEeeeeeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcC
Q 031789 65 SGKIIATGSIFIEKKFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVG 120 (153)
Q Consensus 65 ~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g 120 (153)
+..+||+-+=... ......+.-|.|.|.||++|+|+.|++..-+.++..|
T Consensus 139 g~h~vGYFSKEK~------s~~~nNLaCIltLPpyQrkGyG~~LI~fSYeLSr~Eg 188 (290)
T PLN03238 139 GSHIVGYFSKEKV------SAEDYNLACILTLPPYQRKGYGKFLISFAYELSKREG 188 (290)
T ss_pred CcEEEEEeceecc------ccCCCcEEEEEecChhhhccHhHhHHHHHhHHhhccC
Confidence 4568887543321 1122345567899999999999999999999888765
No 106
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=96.67 E-value=0.017 Score=33.16 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=35.1
Q ss_pred CceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCC
Q 031789 85 GKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGN 132 (153)
Q Consensus 85 ~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n 132 (153)
+..++++-++|.|+.||+|+|..+++.+.+. ...+...+.++|
T Consensus 32 ~~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d-----~~~L~Wrsr~~n 74 (99)
T cd04265 32 DGVPYLDKFAVSSSAQGEGTGEALWRRLRRD-----FPKLFWRSRSTN 74 (99)
T ss_pred CCceEEEEEEEchhhhhcChHHHHHHHHHhh-----CCceEEEeCCCC
Confidence 4689999999999999999999999988865 345666665555
No 107
>PF04768 DUF619: Protein of unknown function (DUF619); InterPro: IPR006855 This region of unknown function is found at the C terminus of Neurospora crassa acetylglutamate synthase (2.7.2.8 from EC). It is also found C-terminal to the amino acid kinase region in some fungal acetylglutamate kinase enzymes (IPR001048 from INTERPRO). These enzymes play a role in arginine biosynthesis.; PDB: 3S6K_A 4AB7_F 3ZZF_B 3ZZI_D 3ZZH_A 3ZZG_A 3S6G_Y 3S6H_A 3S7Y_A.
Probab=96.33 E-value=0.12 Score=32.90 Aligned_cols=111 Identities=15% Similarity=0.186 Sum_probs=65.4
Q ss_pred CcchHHHHHHhhhcCCCCCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeeecCCCceeEEeeEEeCc
Q 031789 18 DKSKGFIELLQQLSVCDSVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFLRNCGKVGHIEDVVVDA 97 (153)
Q Consensus 18 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~v~p 97 (153)
|.+ .+.+++.+.. ....+.+.+...++.. ...+++ + +..-|.+.+..... ......+++.-++|.|
T Consensus 33 d~~-kL~~ll~~sf-~~~~~v~~yl~~l~~~-----~~~iy~--d---~~y~~~AIVt~e~~--~~~~~v~yLdKFav~~ 98 (170)
T PF04768_consen 33 DLD-KLRALLERSF-GGKLDVDHYLDRLNNR-----LFKIYV--D---EDYEGAAIVTPEGP--DSNGPVPYLDKFAVSK 98 (170)
T ss_dssp -HH-HHHHHHHHHS-TSSSBHTTHHHHHHTS------SEEEE--E---TTSSEEEEEEEE-S--CTCTSEEEEEEEEE-H
T ss_pred CHH-HHHHHHHhcc-cccccHHHHHHHhhcc-----ceEEEE--e---CCceEEEEEEecCC--CCCCCCeEEEEEEecc
Confidence 667 3777777766 3345555555555431 333444 2 45555555543211 2345789999999999
Q ss_pred CcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCC--hhhh--hhcCceeeCce
Q 031789 98 SARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGN--KAFY--EKCGLKQKGIH 147 (153)
Q Consensus 98 ~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n--~~~y--~k~Gf~~~~~~ 147 (153)
+.||.|++..+.+.+.+. ...+...+.++| .++| +..|+...+..
T Consensus 99 ~~~g~gv~D~vf~~i~~d-----~p~L~Wrsr~~n~~~~Wyf~rs~G~~~~~~~ 147 (170)
T PF04768_consen 99 SAQGSGVADNVFNAIRKD-----FPKLFWRSREDNPNNKWYFERSDGSFKRNGW 147 (170)
T ss_dssp HHHHTTHHHHHHHHHHHH------SSEEEEEETT-TTHHHHHHH-SEEEEETTE
T ss_pred hhhhcCHHHHHHHHHHHh-----ccceEEEecCCCCcccEEEEeeEEEEECCCe
Confidence 999999999999998654 344666665444 4666 33566554433
No 108
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=96.27 E-value=0.0027 Score=45.71 Aligned_cols=59 Identities=20% Similarity=0.149 Sum_probs=44.9
Q ss_pred eeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEe------cCCC--hhhhhhcCceeeC
Q 031789 87 VGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDC------SLGN--KAFYEKCGLKQKG 145 (153)
Q Consensus 87 ~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~------~~~n--~~~y~k~Gf~~~~ 145 (153)
.+.|..+.|+|+||+-|+|..-+..+.+|..+..+....-.- ..-+ ..|+++.||+...
T Consensus 241 aariarvvvhpdyr~dglg~~sv~~a~ewI~eRriPEmr~rkHlvetiaqmarynpffe~~gfkylw 307 (593)
T COG2401 241 AARIARVVVHPDYRADGLGQLSVIAALEWIIERRIPEMRPRKHLVETIAQMARYNPFFEKVGFKYLW 307 (593)
T ss_pred hhheeEEEeccccccCccchhHHHHHHHHHHHhhChhhhhhhhHHHHHHHHHhcCchhhhhceeeee
Confidence 357999999999999999999999999999887665433211 0011 2799999998654
No 109
>PLN03239 histone acetyltransferase; Provisional
Probab=96.26 E-value=0.019 Score=40.26 Aligned_cols=50 Identities=8% Similarity=-0.072 Sum_probs=35.4
Q ss_pred CCceEEEEEEEeeeeeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcC
Q 031789 65 SGKIIATGSIFIEKKFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVG 120 (153)
Q Consensus 65 ~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g 120 (153)
+-.+||+-+=.. . ......+.-|.|.|.||++|+|+.|++..-+.++..|
T Consensus 197 g~h~vGYFSKEK--~----s~~~~NLaCIltLPpyQrkGyG~lLI~fSYeLSr~Eg 246 (351)
T PLN03239 197 GFHPVGYYSKEK--Y----SDVGYNLACILTFPAHQRKGYGRFLIAFSYELSKKEE 246 (351)
T ss_pred ceEEEEEeeecc--c----CCCCCceEEEEecChhhhcchhhhhHhhhhHhhhhcC
Confidence 356778744331 1 1112345567899999999999999999999888765
No 110
>KOG4601 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=0.035 Score=36.55 Aligned_cols=49 Identities=18% Similarity=0.152 Sum_probs=35.6
Q ss_pred CceEEEEEEEeeeeeecC------CCceeEEeeEEeCcCcccCchHHHHHHHHHH
Q 031789 66 GKIIATGSIFIEKKFLRN------CGKVGHIEDVVVDASARGMQLGKKIIKFLTD 114 (153)
Q Consensus 66 ~~~vG~~~~~~~~~~~~~------~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~ 114 (153)
+.+.|++-+....-+..+ ......|-.+||+++-|++|.|.+|++.+++
T Consensus 81 s~l~GllKVG~KkLfl~D~~~~~ye~e~lcILDFyVheS~QR~G~G~~lfdyMl~ 135 (264)
T KOG4601|consen 81 SILKGLLKVGYKKLFLTDNEQNQYEEEALCILDFYVHESEQRSGNGFKLFDYMLK 135 (264)
T ss_pred hheeeeehccceeEEEeccHhhhhccCCceEEEEEeehhhhhcCchHHHHHHHHH
Confidence 457777654433322222 2456778899999999999999999999886
No 111
>PTZ00064 histone acetyltransferase; Provisional
Probab=96.21 E-value=0.017 Score=42.33 Aligned_cols=50 Identities=10% Similarity=-0.054 Sum_probs=35.9
Q ss_pred CCceEEEEEEEeeeeeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcC
Q 031789 65 SGKIIATGSIFIEKKFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVG 120 (153)
Q Consensus 65 ~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g 120 (153)
+-.+||+.+=... .....-+.-|.|.|.||++|+|+.|++..-+..+..|
T Consensus 368 G~HiVGYFSKEK~------S~~~nNLACILtLPpyQRKGYGklLIdfSYeLSrrEg 417 (552)
T PTZ00064 368 GCHIVGYFSKEKV------SLLHYNLACILTLPCYQRKGYGKLLVDLSYKLSLKEG 417 (552)
T ss_pred CcEEEEEeccccc------CcccCceEEEEecchhhhcchhhhhhhhhhhhhhhcC
Confidence 4578887443321 1112345566899999999999999999999888765
No 112
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=96.09 E-value=0.012 Score=40.18 Aligned_cols=49 Identities=18% Similarity=0.199 Sum_probs=43.5
Q ss_pred chHHHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCceeeCceeeee
Q 031789 103 QLGKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQKGIHMTMY 151 (153)
Q Consensus 103 Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~~~~~~~~~ 151 (153)
|-...++..+.+.|+++|+.++.+.+...+..+|++.||...+....+|
T Consensus 21 ~~~~~~~~~~~~~a~~~~~~ki~~~~~~~~~~~~~~~g~~~e~~i~~~f 69 (266)
T TIGR03827 21 NDVEALIPDLDALAKKEGYTKIIAKVPGSDKPLFEERGYLEEAKIPGYF 69 (266)
T ss_pred ccHHHHHHHHHHHHHHcCCcEEEEEccHHHHHHHHHCCCeEEEeccccc
Confidence 4477999999999999999999999998899999999999998766554
No 113
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=95.98 E-value=0.073 Score=36.88 Aligned_cols=142 Identities=15% Similarity=0.068 Sum_probs=83.8
Q ss_pred eEEEeCcCCCcchHHHHHHhhhcCC----CCCChHHHHHHHHhhcc--CCCceEEEEEEeCCCCceEEEEEEEeeeeee-
Q 031789 9 FQVRKLEITDKSKGFIELLQQLSVC----DSVSDKQFEERFLELNS--YGDDHIVCVIEDDRSGKIIATGSIFIEKKFL- 81 (153)
Q Consensus 9 ~~ir~~~~~D~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~- 81 (153)
--+|++..+|.+ ++.+++.+.... +..+.+++..++.-..+ ...-.+.+++++. +|.|-++.++..-+...
T Consensus 259 ~GlR~~e~kD~~-~v~~L~~~y~~Rfel~~~f~~Eei~h~F~~~~~v~~~~v~~syvVe~p-~gkItdFfsFyslp~t~i 336 (451)
T COG5092 259 EGLRLAEEKDME-DVARLYLEYSRRFELYEEFRFEEIVHTFRPVKNVVDKQVTYSYVVEEP-NGKITDFFSFYSLPFTTI 336 (451)
T ss_pred cccchhhhhCHH-HHHHHHHHHHHHHHHHHHHhHHHHHhhcccccccccCceEEEEEEeCC-CCccccceEEEeccceee
Confidence 347999999999 799998875432 24556666666543322 2223344455554 69999988887544211
Q ss_pred ----cCCCceeEEeeEEeCcCcccC------ch---HHHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCceeeCcee
Q 031789 82 ----RNCGKVGHIEDVVVDASARGM------QL---GKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQKGIHM 148 (153)
Q Consensus 82 ----~~~~~~~~i~~~~v~p~~rg~------Gi---g~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~~~~~~ 148 (153)
...-..+++..-+.+..+.-- .+ -..|+..++-.|+..|+....+.+..+|--|...++|-+-.=..
T Consensus 337 ~n~kykdiq~gYLYYya~d~~~kd~~~~a~~a~~~r~~e~v~Da~ilak~~~~DVFNalt~~dN~lFL~dLkFg~GdGfl 416 (451)
T COG5092 337 ENKKYKDIQGGYLYYYAGDDQFKDFDPKATKALKTRVAEMVGDAMILAKVEGCDVFNALTMMDNSLFLADLKFGCGDGFL 416 (451)
T ss_pred cCccccccceeEEEEEccCccccccChHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhhhccchhHHHhcCccCCCcee
Confidence 111234555444444422211 11 12334444555666688877776777888899999998876666
Q ss_pred eeec
Q 031789 149 TMYF 152 (153)
Q Consensus 149 ~~~~ 152 (153)
.+|+
T Consensus 417 nyYl 420 (451)
T COG5092 417 NYYL 420 (451)
T ss_pred EEEE
Confidence 6654
No 114
>PHA00432 internal virion protein A
Probab=95.94 E-value=0.032 Score=33.85 Aligned_cols=77 Identities=17% Similarity=0.109 Sum_probs=45.4
Q ss_pred EEEEEeCCCCceEEEEEEEeeeeeecCCCceeEEeeEEeCcC---cccCchHHHHHHHHHHHHHHcCCcEEEEEecCCC-
Q 031789 57 VCVIEDDRSGKIIATGSIFIEKKFLRNCGKVGHIEDVVVDAS---ARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGN- 132 (153)
Q Consensus 57 ~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~v~p~---~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n- 132 (153)
++....+ |++++.++ ...++++.+.+-.|..- +|. . .++++....+.+.+ .+..++-.|...|
T Consensus 39 ~~~~~~~--G~~~aI~G--------n~G~~vW~v~T~~v~~~~~~~~r-e-F~k~~~~~ld~ml~-~yp~LwNyV~~~N~ 105 (137)
T PHA00432 39 CVTLSLD--GFVLAIGG--------NQGDQVWFVTSDQVWRLTKKEKR-E-FRKLIMEYRDMMLD-QYPSLWNYVWVGNK 105 (137)
T ss_pred EEEEecC--CeEEEEec--------CCCCceEEEecHHhhhCChhhhH-H-HHHHHHHHHHHHHH-hhhhhheeeecCCH
Confidence 4444443 89988763 13355577766555441 221 1 22333333333332 3677888888888
Q ss_pred --hhhhhhcCceeeCc
Q 031789 133 --KAFYEKCGLKQKGI 146 (153)
Q Consensus 133 --~~~y~k~Gf~~~~~ 146 (153)
++|.+.+||+....
T Consensus 106 ~hir~Lk~lGf~f~~e 121 (137)
T PHA00432 106 SHIRFLKSIGAVFHNE 121 (137)
T ss_pred HHHHHHHHcCeeeecc
Confidence 69999999997754
No 115
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=95.82 E-value=0.017 Score=41.94 Aligned_cols=50 Identities=12% Similarity=0.048 Sum_probs=35.8
Q ss_pred CCceEEEEEEEeeeeeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcC
Q 031789 65 SGKIIATGSIFIEKKFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVG 120 (153)
Q Consensus 65 ~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g 120 (153)
+-.+||+.+=... ......+.-|.|.|.||++|+|+.|++..-+..+..|
T Consensus 290 g~h~vGyFSKEk~------s~~~~NLaCIltlP~yQrkGyG~~LI~~SYeLSr~eg 339 (450)
T PLN00104 290 GCHMVGYFSKEKH------SEEDYNLACILTLPPYQRKGYGKFLIAFSYELSKREG 339 (450)
T ss_pred CcEEEEEeccccc------CcCCCceEEEEecchhhhcchhheehhheehhhhccC
Confidence 4578888543321 1112345567899999999999999999988887665
No 116
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=95.72 E-value=0.059 Score=31.04 Aligned_cols=53 Identities=11% Similarity=0.129 Sum_probs=34.9
Q ss_pred EEEEEEeCCCCceEEEEEEEeeeeee-----------------cCCCceeEEeeEEeCcCcccCchHHHHH
Q 031789 56 IVCVIEDDRSGKIIATGSIFIEKKFL-----------------RNCGKVGHIEDVVVDASARGMQLGKKII 109 (153)
Q Consensus 56 ~~~~~~~~~~~~~vG~~~~~~~~~~~-----------------~~~~~~~~i~~~~v~p~~rg~Gig~~ll 109 (153)
..+++.++ +.++||++.+....... ......++++.++|+|+||++.....|.
T Consensus 31 ~h~lv~~~-~~~~VGt~Rl~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 31 VHLLVRDK-NTEVVGTVRLILPSPAGPLEGFYSESEFDLDPLLPLPRRVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred cEEEEEEC-CCCEEEEEEeeccccccccccCCchhhcCcchhhccCCcEEEeehheECHhHCCChHHHHHh
Confidence 33444443 13699999887533211 1124788999999999999987766653
No 117
>KOG2696 consensus Histone acetyltransferase type b catalytic subunit [Chromatin structure and dynamics]
Probab=95.62 E-value=0.037 Score=39.01 Aligned_cols=46 Identities=9% Similarity=0.052 Sum_probs=33.4
Q ss_pred ceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCC
Q 031789 86 KVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGN 132 (153)
Q Consensus 86 ~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n 132 (153)
....|..+-+.|.||++|+|+.|++.+....... -..+.+++...+
T Consensus 216 ~R~RiSQmlilpPfq~~Glgs~l~E~i~r~~~~~-p~v~DiTVEdPs 261 (403)
T KOG2696|consen 216 IRPRISQMLILPPFQGKGLGSQLYEAIARDYLEE-PTVLDITVEDPS 261 (403)
T ss_pred hhhhhheeEEeccccCCchHHHHHHHHHHhhccC-CceeEEEecCch
Confidence 4567888899999999999999999999654332 233445555444
No 118
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.088 Score=39.51 Aligned_cols=53 Identities=25% Similarity=0.371 Sum_probs=43.3
Q ss_pred eCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCC---hhhhhhcCceeeCce
Q 031789 95 VDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGN---KAFYEKCGLKQKGIH 147 (153)
Q Consensus 95 v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n---~~~y~k~Gf~~~~~~ 147 (153)
+..+.---|+.+++++-++...+.+|.....+.+..+. ++||.++||...+..
T Consensus 824 ~~~~a~D~~~~k~m~~vll~tL~aNGsrGaf~~V~~dD~~~~~fys~lG~~d~~~~ 879 (891)
T KOG3698|consen 824 FGMDASDAHPMKKMIQVLLVTLAANGSRGAFLTVAIDDIERQKFYSELGLTDLGLS 879 (891)
T ss_pred cccccccchHHHHHHHHHHHHHHhcCCcceeEEechhHHHHHHHHHHhchHHHhHh
Confidence 44455567999999999999999999998888886655 499999999877653
No 119
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=95.14 E-value=0.057 Score=38.57 Aligned_cols=33 Identities=15% Similarity=0.193 Sum_probs=26.8
Q ss_pred eEEeeEEeCcCcccCchHHHHHHHHHHHHHHcC
Q 031789 88 GHIEDVVVDASARGMQLGKKIIKFLTDHAHAVG 120 (153)
Q Consensus 88 ~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g 120 (153)
..+.-+.|.|.||++|+|+.|++..-+..+..|
T Consensus 261 yNlaCILtLPpyQRkGYGklLIdFSYeLSr~E~ 293 (396)
T KOG2747|consen 261 YNLACILTLPPYQRKGYGKLLIDFSYELSRREG 293 (396)
T ss_pred cceeeeeecChhhhcccchhhhhhhhhhhcccC
Confidence 345556899999999999999999888776544
No 120
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=95.13 E-value=0.22 Score=34.56 Aligned_cols=110 Identities=13% Similarity=0.007 Sum_probs=60.2
Q ss_pred eEEEeC---cCCCcchHHHHHHhhhcCCCCCC-hHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeeecCC
Q 031789 9 FQVRKL---EITDKSKGFIELLQQLSVCDSVS-DKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFLRNC 84 (153)
Q Consensus 9 ~~ir~~---~~~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~ 84 (153)
+++++. ++++.+ ++.++..++....... ...+...+...... ....+++.+. +|+++|++.+.... .
T Consensus 133 ~~~~~~~~~~~~~~~-el~~i~~~W~~~~~~~e~~~~~~~~~~~~~~--~~~~~~~~~~-dgki~af~~~~~~~-----~ 203 (299)
T PF09924_consen 133 FEVVPIPELDPELRD-ELLEISDEWLKEKERPERGFIMGALEHFDEL--GLRGFVARVA-DGKIVAFAIGSPLG-----G 203 (299)
T ss_dssp -EEEE-----GGGHH-HHHHHHHHHHHHCTHHHHHHHHHHHHTHHHH--T-EEEEEEE--TTEEEEEEEEEEEE------
T ss_pred EEEEECCCCCHHHHH-HHHHHHHHHHhcCchhHHHHHhccccchhhc--CceEEEEEEC-CCcEEEEEEEEEcc-----C
Confidence 556666 667777 6888877765543111 11122223332222 3456666662 39999999887532 1
Q ss_pred CceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEe
Q 031789 85 GKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDC 128 (153)
Q Consensus 85 ~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~ 128 (153)
...+.++-.--+|+ --+|+-..|+..+++.+++.|+..+.+..
T Consensus 204 ~~~~~~~~~k~~~~-a~~G~~e~l~~~~~~~~~~~g~~~lnLg~ 246 (299)
T PF09924_consen 204 RDGWSIDFEKADPD-APKGIYEFLNVEFAEHLKAEGVEYLNLGF 246 (299)
T ss_dssp TTEEEEEEEEE-TT--STTHHHHHHHHHHHHS--TT--EEE---
T ss_pred CccEEEEEEecCCC-CCCcHHHHHHHHHHHhhhhCCceEEEccc
Confidence 34455555555666 33689999999999999988999888544
No 121
>PHA01733 hypothetical protein
Probab=94.43 E-value=0.01 Score=36.57 Aligned_cols=73 Identities=8% Similarity=0.044 Sum_probs=42.0
Q ss_pred CceEEEEEEEeeeeeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHH-HcCCcEEEEEecCCC---hhhhhhcCc
Q 031789 66 GKIIATGSIFIEKKFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAH-AVGCYKVILDCSLGN---KAFYEKCGL 141 (153)
Q Consensus 66 ~~~vG~~~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~-~~g~~~~~~~~~~~n---~~~y~k~Gf 141 (153)
|+++|.++... ......+..+.+++-.|.. + -...+..+-.... ...+..++-.+...| ++|.+.+||
T Consensus 56 G~l~aI~Gv~~--d~~~~vG~pWlV~T~~v~k-~-----~~~f~re~r~~l~e~~~Yp~LwNyV~~~N~~hir~Lk~lGF 127 (153)
T PHA01733 56 GSLAGVAGLVE--DMGNRVGEIWMVCTPAIEK-N-----PIALLRGAKWWLPKSRNYDLLWNIVDKRNLVHRKLLRKLGF 127 (153)
T ss_pred CcEEEEecccc--cccCCCCceeEEecHHhHh-C-----CHHHHHHHHHHHHHhccccHHHHhHhcccHHHHHHHHHcCc
Confidence 89999887763 1111223334443333332 2 2233333333332 346777777888888 599999999
Q ss_pred eeeCc
Q 031789 142 KQKGI 146 (153)
Q Consensus 142 ~~~~~ 146 (153)
+....
T Consensus 128 ~f~~~ 132 (153)
T PHA01733 128 KGLRY 132 (153)
T ss_pred eeecc
Confidence 97654
No 122
>PF11124 Pho86: Inorganic phosphate transporter Pho86; InterPro: IPR024297 Pho86p is an ER protein which is produced in response to phosphate starvation. It is essential for growth when phosphate levels are limiting []. Pho86p is also involved in the regulation of Pho84p, a high-affinity phosphate transporter, which is localised to the endoplasmic reticulum (ER) in low phosphate medium. When the level of phosphate increases Pho84p is transported to the vacuole. Pho86p is required for packaging of Pho84p in to COPII vesicles [].
Probab=93.73 E-value=0.69 Score=32.07 Aligned_cols=80 Identities=20% Similarity=0.204 Sum_probs=59.3
Q ss_pred CceEEEEEEEeeeeeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHH--------c-CCc-EEEEEec-CCC--
Q 031789 66 GKIIATGSIFIEKKFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHA--------V-GCY-KVILDCS-LGN-- 132 (153)
Q Consensus 66 ~~~vG~~~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~--------~-g~~-~~~~~~~-~~n-- 132 (153)
+.+|+.+++..+........-+..|.++.|+.=|..-|+-..|+++++-.+++ . |.. .+.+++- -++
T Consensus 178 etPIAiisl~~~~~~St~~~~vv~ItgigvRkVy~Ksgi~e~LidWA~~Rtr~l~~ey~k~k~~~si~ll~d~YSFD~~~ 257 (304)
T PF11124_consen 178 ETPIAIISLVPNKDQSTKENFVVKITGIGVRKVYVKSGIDEDLIDWAMLRTRQLYKEYLKGKKGCSIKLLVDVYSFDKDM 257 (304)
T ss_pred CCceEEEEeccccccCCCceEEEEEeeeEEEEEEeecChHHHHHHHHHHHHHHHHHHhccccccceEEEEEEeeeccHHH
Confidence 79999999987665444445678899999999999999999999999666554 1 222 2333332 222
Q ss_pred hhhhhhcCceeeC
Q 031789 133 KAFYEKCGLKQKG 145 (153)
Q Consensus 133 ~~~y~k~Gf~~~~ 145 (153)
.++.++.||....
T Consensus 258 ~k~L~~~gF~~i~ 270 (304)
T PF11124_consen 258 KKTLKKKGFKKIS 270 (304)
T ss_pred HHHHHHCCCeeee
Confidence 6999999999876
No 123
>PF09390 DUF1999: Protein of unknown function (DUF1999); InterPro: IPR018987 This family contains a putative Fe-S binding reductase (Q72J89 from SWISSPROT) whose structure adopts an alpha and beta fold. ; PDB: 2D4O_A 2D4P_A.
Probab=93.47 E-value=1.1 Score=27.57 Aligned_cols=87 Identities=14% Similarity=0.129 Sum_probs=51.4
Q ss_pred ceEEEEEEeCCCCceEEEEEEEeeeeeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCCh
Q 031789 54 DHIVCVIEDDRSGKIIATGSIFIEKKFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGNK 133 (153)
Q Consensus 54 ~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~ 133 (153)
+-..|++.++ ++++.|++.--.-| .....+..+..+.+.|. +......-|+..+..-|-+.++..+.+...+.-.
T Consensus 54 sgHSFvA~~e-~~~~~GfvLAQaVW---QGdrptVlV~ri~~~~~-~~~~~~~GLLrAvvKSAYDa~VYEv~l~l~p~l~ 128 (161)
T PF09390_consen 54 SGHSFVAEDE-GGELQGFVLAQAVW---QGDRPTVLVRRILLAPG-EPEEVYEGLLRAVVKSAYDAGVYEVHLHLDPELE 128 (161)
T ss_dssp CS--EEEE-E-TTEEEEEEEEEEEE----SSSEEEEEEEE---EE-SSHHHHHHHHHHHHHHHHHTT-SEEEE---THHH
T ss_pred cCCcEEEEcc-CCceeeeeehhHHh---cCCCceEEEEEeecCCC-CcHHHHHHHHHHHHHhhhccceEEEEeeCCHHHH
Confidence 3456677743 48999997655433 24456677777766665 3357778899999999999999999998887555
Q ss_pred hhhhhcCceeeC
Q 031789 134 AFYEKCGLKQKG 145 (153)
Q Consensus 134 ~~y~k~Gf~~~~ 145 (153)
.-.+..||...+
T Consensus 129 ~A~~a~~~~~~~ 140 (161)
T PF09390_consen 129 AAARAEGFRLGG 140 (161)
T ss_dssp HHHHHTT----S
T ss_pred HHHhhcccccCC
Confidence 555666666554
No 124
>cd04266 DUF619-NAGS-FABP DUF619 domain of N-acetylglutamate Synthase of the fungal arginine-biosynthetic pathway. DUF619-NAGS-FABP: This family includes the DUF619 domain of N-acetylglutamate synthase (NAGS) of the fungal arginine-biosynthetic pathway (FABP). This NAGS (also known as arginine-requiring protein 2 or ARG2) consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. NAGS catalyzes the formation of NAG from acetylcoenzyme A and L-glutamate. The DUF619 domain, yet to be characterized, is predicted to function in NAGS association in fungi.
Probab=93.27 E-value=0.97 Score=26.46 Aligned_cols=54 Identities=19% Similarity=0.351 Sum_probs=39.4
Q ss_pred CceeEEeeEEeCcCccc-CchHHHHHHHHHHHHHHcCCcE-EEEEecCCC--hhhh--hhcCcee
Q 031789 85 GKVGHIEDVVVDASARG-MQLGKKIIKFLTDHAHAVGCYK-VILDCSLGN--KAFY--EKCGLKQ 143 (153)
Q Consensus 85 ~~~~~i~~~~v~p~~rg-~Gig~~ll~~~~~~~~~~g~~~-~~~~~~~~n--~~~y--~k~Gf~~ 143 (153)
...+++.-++|.++.|| .|++..+.+.+.+ .... +...+.++| .++| +..|+-.
T Consensus 37 ~~v~yLdKFav~~~~~gl~gv~D~vf~~m~~-----~fp~~L~Wrsr~~n~~n~Wyfers~Gs~~ 96 (108)
T cd04266 37 EKIAYLDKFAVLPKAQGSDGIADILFNAMLD-----GFPNELIWRSRKDNPVNKWYFERSVGVLK 96 (108)
T ss_pred CCceEEEEEEEccccccccchHHHHHHHHHH-----cCCCceEEEeCCCCcccceEEeeeeEEEE
Confidence 56899999999999997 8999999998876 2443 666665555 3554 3355544
No 125
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=91.98 E-value=0.28 Score=31.06 Aligned_cols=54 Identities=9% Similarity=0.060 Sum_probs=41.5
Q ss_pred ceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcC
Q 031789 86 KVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCG 140 (153)
Q Consensus 86 ~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~G 140 (153)
-+++++...|.|+.+|.||+..+ ..+..-.++.|+..-..++.+.-.+.+++++
T Consensus 84 LVaElGLygVRpDLEGlGi~hs~-r~m~PvLq~LgVPF~FGtVR~al~~Hv~R~~ 137 (196)
T PF02474_consen 84 LVAELGLYGVRPDLEGLGISHSM-RVMYPVLQELGVPFGFGTVRHALRNHVERLC 137 (196)
T ss_pred eEEEEEEEEeeccccccccchhh-hhhhhHHHhcCCCeecccchHHHHHHHHHHh
Confidence 36888888999999999999866 5777777778999888888665554555443
No 126
>COG2935 Putative arginyl-tRNA:protein arginylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.33 E-value=2.2 Score=28.78 Aligned_cols=58 Identities=19% Similarity=0.053 Sum_probs=43.8
Q ss_pred CCceEEEEEEEeeeeeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEec
Q 031789 65 SGKIIATGSIFIEKKFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCS 129 (153)
Q Consensus 65 ~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~ 129 (153)
.|++|+.+..-+-++ . .-.-..+-+|++...++|+-.+-.=+.+|++.|...+++.-.
T Consensus 159 ~G~LvAVavtDvL~d------G-lSsVY~FydPd~s~~SLGt~~iL~~I~~aq~~~l~yvYLGYw 216 (253)
T COG2935 159 EGKLVAVAVTDVLPD------G-LSSVYTFYDPDMSKRSLGTLSILDQIAIAQRLGLPYVYLGYW 216 (253)
T ss_pred CCcEEEEEeeecccC------c-ceeEEEEeCCChhhhcchHHHHHHHHHHHHHhCCCeEEEEEE
Confidence 388998876654321 1 111234569999999999999988899999999999999763
No 127
>COG2898 Uncharacterized conserved protein [Function unknown]
Probab=90.25 E-value=3.8 Score=31.15 Aligned_cols=66 Identities=12% Similarity=0.097 Sum_probs=50.1
Q ss_pred EEEEEeCCCCceEEEEEEEeeeeeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecC
Q 031789 57 VCVIEDDRSGKIIATGSIFIEKKFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSL 130 (153)
Q Consensus 57 ~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~ 130 (153)
+.+... +|+++|++.+... .......++-..-+|+.- +|+-..|+..++.++|++|+.++.+...+
T Consensus 395 va~~~~--~g~VvaFa~l~~~-----~~~~~~SlDlMR~sp~ap-~g~mdfLf~~li~~aKe~G~~~fsLgmAp 460 (538)
T COG2898 395 VAAVDN--EGEVVAFANLMPT-----GGKEGYSLDLMRRSPDAP-NGTMDFLFSELILWAKEEGYQRFSLGMAP 460 (538)
T ss_pred eeEEcC--CCCeEEEEeeccc-----CCcceeEEEeeecCCCCC-chHHHHHHHHHHHHHHHcCCeEEecCCcc
Confidence 444444 4889999999852 223445666677788877 59999999999999999999999887643
No 128
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=90.08 E-value=5.1 Score=28.24 Aligned_cols=112 Identities=16% Similarity=0.120 Sum_probs=64.7
Q ss_pred EEEeCcCCCcchHHHHHHhhhcCCCCCCh--HHHHHHHHhhc-cCCC---ceEEEEEEeCCCCceEEEEEEEeeeeee-c
Q 031789 10 QVRKLEITDKSKGFIELLQQLSVCDSVSD--KQFEERFLELN-SYGD---DHIVCVIEDDRSGKIIATGSIFIEKKFL-R 82 (153)
Q Consensus 10 ~ir~~~~~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~vG~~~~~~~~~~~-~ 82 (153)
.+-..+...++ ++..++.+....+.... -.+...+-+|. ..++ .+++.+-.-+ ..++||++......-.. .
T Consensus 83 ~idv~N~~ql~-dv~~lL~eNYVED~~ag~rf~Y~~EFl~Wal~~pg~kK~whigvRvk~-t~klVaFIsa~p~~v~vRg 160 (451)
T COG5092 83 VIDVANKKQLE-DVFVLLEENYVEDIYAGHRFRYSVEFLQWALDGPGGKKRWHIGVRVKG-TQKLVAFISAKPHLVSVRG 160 (451)
T ss_pred eEeccccchhH-HHHHHHHhhhhhhhhhhhHHHHHHHHHHHhhcCCCCceeeEEEEEEcc-cceeEEEEecceeEEEEcc
Confidence 34445556666 56666665443321111 11222222332 2221 3333333332 46899998665322211 1
Q ss_pred CCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcE
Q 031789 83 NCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYK 123 (153)
Q Consensus 83 ~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~ 123 (153)
....++.+.-++|+.+.|++-+.--|++.+...+.-.|+.+
T Consensus 161 K~~~~~evNFLCihk~lRsKRltPvLIkEiTRR~n~~~iw~ 201 (451)
T COG5092 161 KRSSVLEVNFLCIHKELRSKRLTPVLIKEITRRANVDGIWR 201 (451)
T ss_pred cccccceEEEEEEehhhhhCccchHHHHHHHHhhhhhhhHH
Confidence 23457899999999999999999999999999887666543
No 129
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=89.55 E-value=6.3 Score=28.56 Aligned_cols=130 Identities=12% Similarity=0.038 Sum_probs=74.4
Q ss_pred CceEEEeCcCCCcch----HHHHHHhhhcC----CCCCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeee
Q 031789 7 NRFQVRKLEITDKSK----GFIELLQQLSV----CDSVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEK 78 (153)
Q Consensus 7 ~~~~ir~~~~~D~~~----~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~ 78 (153)
.+++++.++.+++.. .+..++..... .+..+.+-+....+.+ +....++++..+ |++||+..+....
T Consensus 198 ~Gi~~~~l~G~~i~~~~~~~f~~~Y~~Ty~k~~~~~yLt~~FF~~l~~~m---~~~~~l~~A~~~--g~~Va~aL~l~~~ 272 (370)
T PF04339_consen 198 QGIRIRTLTGDEITDEDWDRFYRLYQNTYAKRWGRPYLTREFFEQLAETM---PEQVVLVVARRD--GQPVAFALCLRGD 272 (370)
T ss_pred cCCEEEEEeCCCCCHHHHHHHHHHHHHHHHhhCCChhhcHHHHHHHHHhC---cCCEEEEEEEEC--CeEEEEEEEEEeC
Confidence 457777776555442 24444443321 2233444444433332 335566666665 9999998777542
Q ss_pred eeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCceeeCceeeeec
Q 031789 79 KFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQKGIHMTMYF 152 (153)
Q Consensus 79 ~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~~~~~~~~~~ 152 (153)
.+.+=.......++.+... ..+.=..+++|-++|+..+...+... .+ ...||.++.+.-.+++
T Consensus 273 -------~~LyGRYwG~~~~~~~LHF-e~cYYq~Ie~aI~~Gl~~f~~GaqGE-HK--~~RGf~P~~t~S~H~~ 335 (370)
T PF04339_consen 273 -------DTLYGRYWGCDEEIPFLHF-ELCYYQGIEYAIEHGLRRFEPGAQGE-HK--IARGFEPVPTYSAHWI 335 (370)
T ss_pred -------CEEEEeeecccccccCcch-HHHHHHHHHHHHHcCCCEEECCcchh-HH--HHcCCccccceeeeee
Confidence 2333333334555555443 34455788999999999877765432 22 3579998887765543
No 130
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=89.36 E-value=4.9 Score=33.46 Aligned_cols=66 Identities=14% Similarity=0.125 Sum_probs=49.5
Q ss_pred EEEEEeCCCCceEEEEEEEeeeeeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecC
Q 031789 57 VCVIEDDRSGKIIATGSIFIEKKFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSL 130 (153)
Q Consensus 57 ~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~ 130 (153)
++.+.+. +|+++|++.+... . .+.+.++-+--+|+. -.|+...|+..+++++++.|+..+.+...+
T Consensus 422 i~~a~d~-~G~i~af~s~~p~-----~-~~g~slDLMRr~pda-pnGvmE~L~~~l~~~~k~~G~~~~sLg~AP 487 (1094)
T PRK02983 422 LVEAHDA-DGQVVALLSFVPW-----G-RRGLSLDLMRRSPDA-PNGVIELMVAELALEAESLGITRISLNFAV 487 (1094)
T ss_pred EEEEECC-CCeEEEEEEEeee-----C-CCCEEEEecccCCCC-CCCHHHHHHHHHHHHHHHcCCCEEEechhh
Confidence 3444443 5999999999852 1 223666656667776 469999999999999999999999987644
No 131
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=88.50 E-value=0.42 Score=33.72 Aligned_cols=30 Identities=13% Similarity=0.096 Sum_probs=23.0
Q ss_pred eEEeeEEeCcCcccCchHHHHHHHHHHHHH
Q 031789 88 GHIEDVVVDASARGMQLGKKIIKFLTDHAH 117 (153)
Q Consensus 88 ~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~ 117 (153)
..+.-+-+.|.||++|+|+.|++..-...+
T Consensus 263 yNLaCILtLP~yQRrGYG~lLIdFSY~Ls~ 292 (395)
T COG5027 263 YNLACILTLPPYQRRGYGKLLIDFSYLLSQ 292 (395)
T ss_pred CceEEEEecChhHhcccceEeeeeeeeccc
Confidence 445556799999999999999877655444
No 132
>COG5630 ARG2 Acetylglutamate synthase [Amino acid transport and metabolism]
Probab=87.74 E-value=6.9 Score=28.37 Aligned_cols=49 Identities=12% Similarity=0.199 Sum_probs=37.3
Q ss_pred CceEEEEEEEeeeeeecCCCceeEEeeEEeCcCccc-CchHHHHHHHHHHHHH
Q 031789 66 GKIIATGSIFIEKKFLRNCGKVGHIEDVVVDASARG-MQLGKKIIKFLTDHAH 117 (153)
Q Consensus 66 ~~~vG~~~~~~~~~~~~~~~~~~~i~~~~v~p~~rg-~Gig~~ll~~~~~~~~ 117 (153)
|.--|.+.+.... ....++.|++-++|.++.+| -||+..+..-+.+..-
T Consensus 382 gdY~g~aIlTyeg---s~~~~vpYLDKfAVl~~aQGs~gisd~vfniM~e~fP 431 (495)
T COG5630 382 GDYRGAAILTYEG---SGENNVPYLDKFAVLDDAQGSEGISDAVFNIMREEFP 431 (495)
T ss_pred ccceeeEEEEeec---cCCCCCcceeeeeccccccccchHHHHHHHHHHHhCc
Confidence 5666777666431 12347899999999999999 8999999988877643
No 133
>PRK04531 acetylglutamate kinase; Provisional
Probab=87.06 E-value=10 Score=27.88 Aligned_cols=56 Identities=21% Similarity=0.356 Sum_probs=40.4
Q ss_pred CceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCC--hhhh--hhcCceeeC
Q 031789 85 GKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGN--KAFY--EKCGLKQKG 145 (153)
Q Consensus 85 ~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n--~~~y--~k~Gf~~~~ 145 (153)
+..+++.-|+|.++.||.|++..+...+.+.. ..+.+.+.++| .++| +.-|+...+
T Consensus 308 ~~~~~Ldkf~v~~~~~~~~v~d~vf~~~~~~~-----~~L~Wrsr~~n~~~~Wyf~~s~G~~~~~ 367 (398)
T PRK04531 308 GGGPYLDKFAVLDDARGEGLGRAVWNVMREET-----PQLFWRSRHNNTINKFYYAESDGCIKQE 367 (398)
T ss_pred CCceEeEEEEEccchhhcChHHHHHHHHHhhC-----CceEEEcCCCCCccceeeecccceEecC
Confidence 45799999999999999999999999887653 45666665555 3444 335554433
No 134
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=85.43 E-value=1.8 Score=27.86 Aligned_cols=77 Identities=12% Similarity=0.220 Sum_probs=59.0
Q ss_pred CCceEEEEEEEeeee---ee-------------------cCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCc
Q 031789 65 SGKIIATGSIFIEKK---FL-------------------RNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCY 122 (153)
Q Consensus 65 ~~~~vG~~~~~~~~~---~~-------------------~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~ 122 (153)
+|++++.+++..... +. -......+|+.++.. +.|.+..|+..+.......|++
T Consensus 43 ~g~l~aa~G~r~A~~~~LFlEqYLd~piE~~l~~~~g~~v~R~~IvEvGnLAs~----~~g~~~~l~~~l~~~L~~~g~~ 118 (179)
T PF12261_consen 43 DGELVAAAGLRFASQEPLFLEQYLDQPIEQLLSRRFGRPVSRSQIVEVGNLASF----SPGAARLLFAALAQLLAQQGFE 118 (179)
T ss_pred CCCEEEEEeecccCCCCcchhhhcCCcHHHHHHhhcCCCcchhheeEeechhhc----CcccHHHHHHHHHHHHHHCCCC
Confidence 589999988875321 00 011345777777655 4799999999999999999999
Q ss_pred EEEEEecCCChhhhhhcCceeeC
Q 031789 123 KVILDCSLGNKAFYEKCGLKQKG 145 (153)
Q Consensus 123 ~~~~~~~~~n~~~y~k~Gf~~~~ 145 (153)
.+..+.++.-++++.|+|..+..
T Consensus 119 w~vfTaT~~lr~~~~rlgl~~~~ 141 (179)
T PF12261_consen 119 WVVFTATRQLRNLFRRLGLPPTV 141 (179)
T ss_pred EEEEeCCHHHHHHHHHcCCCcee
Confidence 99998888878999999988654
No 135
>PHA02769 hypothetical protein; Provisional
Probab=81.83 E-value=2.2 Score=25.10 Aligned_cols=42 Identities=29% Similarity=0.394 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHH---HHcCCcEEEEEe-cCCChhhhhhcCceeeCc
Q 031789 105 GKKIIKFLTDHA---HAVGCYKVILDC-SLGNKAFYEKCGLKQKGI 146 (153)
Q Consensus 105 g~~ll~~~~~~~---~~~g~~~~~~~~-~~~n~~~y~k~Gf~~~~~ 146 (153)
|.-|+..+...+ +..|++.++.-- -..+-++|.|.||+.+|.
T Consensus 94 gd~lvnfl~~l~~k~~~dg~evlwtlgfpdhsnaly~kagfk~vg~ 139 (154)
T PHA02769 94 GDHLVNFLNDLAEKLKKDGFEVLWTLGFPDHSNALYKKAGFKLVGQ 139 (154)
T ss_pred hHHHHHHHHHHHHHHhcCCeEEEEEecCCCcchhHHhhhhhhHhcc
Confidence 445555554444 445777665433 334469999999998875
No 136
>COG5653 Protein involved in cellulose biosynthesis (CelD) [Cell envelope biogenesis, outer membrane]
Probab=81.72 E-value=18 Score=26.51 Aligned_cols=87 Identities=13% Similarity=0.097 Sum_probs=61.1
Q ss_pred CCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHH
Q 031789 35 SVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTD 114 (153)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~ 114 (153)
.|+.+-+...+....... ....+...-+ |.+|+...... .+.+....-..++|++-.-.=|-.|+-.+++
T Consensus 253 ~~t~~fl~dL~~~~~~d~-~~rl~gL~~G--~~lvAV~~~lr-------~~~t~h~~l~a~dpe~~~~SPG~~lf~d~i~ 322 (406)
T COG5653 253 GWTRDFLRDLFTQRAEDG-SGRLFGLHAG--GRLVAVHGLLR-------QGGTYHAWLGAIDPEFARASPGMLLFLDLIE 322 (406)
T ss_pred chHHHHHHHHHhccCcCC-ceEEEEEeeC--CEEEEEEeeec-------cCCEEEEEeeccCHHHhhcCchHHHHHHHHH
Confidence 444555555555544444 5555555553 78888766553 2445555567799999988999999999999
Q ss_pred HHHHcCCcEEEEEecCC
Q 031789 115 HAHAVGCYKVILDCSLG 131 (153)
Q Consensus 115 ~~~~~g~~~~~~~~~~~ 131 (153)
++...|+..+.+.+...
T Consensus 323 ~~~~~g~~~~DfgvG~q 339 (406)
T COG5653 323 WACGQGLARFDFGVGDQ 339 (406)
T ss_pred HHhcCCCeEEeecCCCh
Confidence 99999999988887543
No 137
>PF07395 Mig-14: Mig-14; InterPro: IPR009977 This family contains a number of bacterial mig-14 proteins (approximately 270 residues long). In Salmonella, mig-14 contributes to resistance to antimicrobial peptides, although the mechanism is not fully understood [].
Probab=79.92 E-value=17 Score=25.06 Aligned_cols=102 Identities=16% Similarity=0.113 Sum_probs=57.4
Q ss_pred EEEeCcCCCcchHHHHHHhhhc---CCC-CCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeeecCCC
Q 031789 10 QVRKLEITDKSKGFIELLQQLS---VCD-SVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFLRNCG 85 (153)
Q Consensus 10 ~ir~~~~~D~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~ 85 (153)
.++++.+=..+ ++.+++.+++ +.. ....+.+.+.+..+...--.+.+++ +|++||+-.+.... ..
T Consensus 128 ~v~~v~~~S~~-Ela~iY~~Lf~~Rwg~~~~~~~~l~e~f~~Lr~~~fG~vL~l-----~~~P~Aiqlv~k~e-----s~ 196 (264)
T PF07395_consen 128 SVRPVSEFSPE-ELADIYIDLFQKRWGFRCYGKEHLAEFFSELRHMIFGSVLFL-----NGQPCAIQLVYKVE-----SP 196 (264)
T ss_pred EEEEHHHCCHH-HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhHHhheeeEEEE-----CCcceEEEEEEEec-----CC
Confidence 45555544444 3555555432 222 2344555555554432221223333 38999986666432 22
Q ss_pred ceeEEe--eEEeCcCcccCchHHHH----HHHHHHHHHHcCCc
Q 031789 86 KVGHIE--DVVVDASARGMQLGKKI----IKFLTDHAHAVGCY 122 (153)
Q Consensus 86 ~~~~i~--~~~v~p~~rg~Gig~~l----l~~~~~~~~~~g~~ 122 (153)
...+++ ...+||+++.-..|+-| ++.+.++|++.|-.
T Consensus 197 ~wv~~D~iNgG~Dp~~~~~SpGSiL~w~Ni~~A~~~~~~~~k~ 239 (264)
T PF07395_consen 197 KWVYFDYINGGYDPECRDFSPGSILMWLNIQDAWEYCRAQGKP 239 (264)
T ss_pred CeEEEecccCccCcccccCCCccEEEEeeHHHHHHHHHHhCCc
Confidence 233332 34689999999999988 57777788777644
No 138
>PF11039 DUF2824: Protein of unknown function (DUF2824); InterPro: IPR022568 This family of proteins has no known function. Members of the family are found in P22-like viruses and bacteria. Some of the phage members have been annotated as head assembly proteins, but this has not been confirmed.
Probab=79.58 E-value=11 Score=22.90 Aligned_cols=76 Identities=13% Similarity=0.051 Sum_probs=46.7
Q ss_pred CceEEEEEEEeeeeeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHc-CCcEEEEEecCCC---hhhhhhcCc
Q 031789 66 GKIIATGSIFIEKKFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAV-GCYKVILDCSLGN---KAFYEKCGL 141 (153)
Q Consensus 66 ~~~vG~~~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~-g~~~~~~~~~~~n---~~~y~k~Gf 141 (153)
++++|+..+.-.+. .+...+. .-+|++|| ++...-.....|.-++ .+..+...+...- +-+.+=+|.
T Consensus 47 ~~l~Gi~~v~~i~~------~~vecHa-~y~P~fRG--~a~~~~~~F~kwlL~Ns~f~~vit~vp~kt~~Grvic~llg~ 117 (151)
T PF11039_consen 47 GQLGGIVYVEEIQP------SVVECHA-MYDPGFRG--YALEIGRLFCKWLLENSPFQNVITFVPDKTRYGRVICRLLGA 117 (151)
T ss_pred eEEEEEEEEEEEee------eeEEEEe-eeccccch--hHHHHHHHHHHHHhcCCceeEEEEecccccccchhHhhhhCC
Confidence 78888877764322 1334433 35899998 8888888888888766 4443333332221 334455788
Q ss_pred eeeCceeee
Q 031789 142 KQKGIHMTM 150 (153)
Q Consensus 142 ~~~~~~~~~ 150 (153)
+.+|...++
T Consensus 118 ~RVG~id~~ 126 (151)
T PF11039_consen 118 RRVGHIDDY 126 (151)
T ss_pred ceeeeHHHH
Confidence 888766553
No 139
>KOG3014 consensus Protein involved in establishing cohesion between sister chromatids during DNA replication [Replication, recombination and repair]
Probab=79.18 E-value=3.2 Score=28.03 Aligned_cols=32 Identities=9% Similarity=0.076 Sum_probs=27.3
Q ss_pred ceeEEeeEEeCcCcccCchHHHHHHHHHHHHH
Q 031789 86 KVGHIEDVVVDASARGMQLGKKIIKFLTDHAH 117 (153)
Q Consensus 86 ~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~ 117 (153)
....|..++|.+..|++|+++.|+..+.....
T Consensus 182 ~~~GIsRIWV~s~~Rr~gIAs~lldva~~~~~ 213 (257)
T KOG3014|consen 182 AICGISRIWVSSLRRRKGIASLLLDVARCNFV 213 (257)
T ss_pred cEeeeEEEEeehhhhhhhhHHHHHHHHHHhhh
Confidence 45678899999999999999999998876543
No 140
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=75.36 E-value=25 Score=24.50 Aligned_cols=48 Identities=13% Similarity=0.135 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCceeeCceeeeec
Q 031789 105 GKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQKGIHMTMYF 152 (153)
Q Consensus 105 g~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~~~~~~~~~~ 152 (153)
-..++..+.+++.+.|...+...+.+....+|+.+||.......++.+
T Consensus 57 ~~~~i~~f~~~~~~~~~~~~~~~v~e~~~~~~~~~g~~~~~~g~eyv~ 104 (299)
T PF09924_consen 57 RPELIEEFLEFADRNGWKPIFYGVSEEFLELLEELGFESNRDGEEYVY 104 (299)
T ss_dssp HHHHHHHHHHHHHHCTS--EEEEE-HHHHHHHHHHSEEE-GGG-EEEE
T ss_pred HHHHHHHHHHHHHHCCCceEEEECCHHHHHHHHHcCCeeecCCcEEEE
Confidence 358999999999999999888889888889999999988877666544
No 141
>PRK00756 acyltransferase NodA; Provisional
Probab=74.89 E-value=6.1 Score=25.12 Aligned_cols=55 Identities=13% Similarity=0.140 Sum_probs=39.1
Q ss_pred ceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCCh----hhhhhcCce
Q 031789 86 KVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGNK----AFYEKCGLK 142 (153)
Q Consensus 86 ~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~----~~y~k~Gf~ 142 (153)
-+++++...|.|+..|.||+..+ ..+.--.++.|+..-.-++.+.-. +|. +.|..
T Consensus 84 LVaElGLygVRpDLEGlGi~~S~-r~m~PvLq~LgVPF~FGtVR~al~~Hv~R~~-r~g~~ 142 (196)
T PRK00756 84 LVAELGLYGVRPDLEGLGIAHSI-RAMYPVLQELGVPFAFGTVRHALRNHVERLC-RNGLA 142 (196)
T ss_pred eEEEeeeeeeccccccccchhhH-HHHHHHHHhcCCCeecccchHHHHHHHHHHh-ccCcc
Confidence 46888888999999999998866 566666677788877666644322 444 55544
No 142
>cd03173 DUF619-like DUF619 domain of various N-acetylglutamate Kinases and N-acetylglutamate Synthases. DUF619-like: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. This subgroup also includes the DUF619 domain of the FABP N-acetylglutamate kinase (NAGK), the enzyme that catalyzes the second reaction of arginine
Probab=72.27 E-value=16 Score=21.01 Aligned_cols=43 Identities=5% Similarity=0.106 Sum_probs=34.8
Q ss_pred CceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCC
Q 031789 85 GKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGN 132 (153)
Q Consensus 85 ~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n 132 (153)
...+++..++|.+..++.|++..+.+.+.+. ...+...+.++|
T Consensus 31 ~~v~~LdkFav~~~~~~~gv~D~vf~~i~~d-----~~~L~Wrsr~~n 73 (98)
T cd03173 31 NSIPYLDKFAVSDHLWLNNVTDNIFNLIRKD-----FPSLLWRVREND 73 (98)
T ss_pred CCCEEEEEEEEcccccccCHHHHHHHHHHhh-----CCeeEEEeCCCC
Confidence 5678999999999999999999999988754 356666665555
No 143
>PF11090 DUF2833: Protein of unknown function (DUF2833); InterPro: IPR020335 This entry contains proteins with no known function.
Probab=72.07 E-value=13 Score=20.82 Aligned_cols=25 Identities=16% Similarity=0.033 Sum_probs=19.3
Q ss_pred CcEEEEEecCCC---hhhhhhcCceeeC
Q 031789 121 CYKVILDCSLGN---KAFYEKCGLKQKG 145 (153)
Q Consensus 121 ~~~~~~~~~~~n---~~~y~k~Gf~~~~ 145 (153)
+..++-.+...| ++|.+++|++-..
T Consensus 56 Y~~l~N~V~~~N~~HIRfLk~lGA~f~~ 83 (86)
T PF11090_consen 56 YPVLWNFVWVGNKSHIRFLKSLGAVFHN 83 (86)
T ss_pred hhheeEEEEeCCHHHHHHHHhcCcEEcc
Confidence 556777777777 6999999998554
No 144
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=69.85 E-value=8.3 Score=25.43 Aligned_cols=47 Identities=11% Similarity=0.183 Sum_probs=33.2
Q ss_pred CchHHHHHHHHHHHHHHc--CCcEEEEEecCCC---hhhhhhcCceeeCcee
Q 031789 102 MQLGKKIIKFLTDHAHAV--GCYKVILDCSLGN---KAFYEKCGLKQKGIHM 148 (153)
Q Consensus 102 ~Gig~~ll~~~~~~~~~~--g~~~~~~~~~~~n---~~~y~k~Gf~~~~~~~ 148 (153)
-|.|..++..+++..... ....+.+..+... +++..++||......+
T Consensus 73 AGMGG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~~gf~I~~E~l 124 (205)
T PF04816_consen 73 AGMGGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYENGFEIIDEDL 124 (205)
T ss_dssp EEE-HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHHTTEEEEEEEE
T ss_pred ecCCHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHHCCCEEEEeEE
Confidence 389999999999987654 5567777666544 5888999999877654
No 145
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=69.68 E-value=28 Score=25.64 Aligned_cols=79 Identities=15% Similarity=0.111 Sum_probs=42.5
Q ss_pred CCceEEEEEEEeeeeeecCCCceeEEeeEEeCc--CcccCchHHHHHHHHHHHHHHcCCcEEEEEec-------------
Q 031789 65 SGKIIATGSIFIEKKFLRNCGKVGHIEDVVVDA--SARGMQLGKKIIKFLTDHAHAVGCYKVILDCS------------- 129 (153)
Q Consensus 65 ~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~v~p--~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~------------- 129 (153)
+++++|.+.+..... ......+++. =-| +|...-+-..+++.+.++++++++-.+.+..+
T Consensus 44 ~~~v~aa~ll~~~~~--~~g~~~~yip---rGPv~d~~d~ell~~f~~~Lk~~akk~~a~~lridP~~~~~~~~~~g~~~ 118 (406)
T PF02388_consen 44 GGEVAAAALLLRKKP--FKGFKYAYIP---RGPVMDYSDEELLEFFLEELKKYAKKKRALFLRIDPNVIYQERDEDGEPI 118 (406)
T ss_dssp TS-EEEEEEEEEEEC--TTTCEEEEET---T--EC-TT-HHHHHHHHHHHHHHHCTTTEEEEEE--S-EEECE-TTS-EE
T ss_pred CCeEEEEEEEEEecc--CCceeEEEEC---CCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEeCchhhhhcccccccc
Confidence 367777665543321 1112234432 124 67777888889999999998877766655331
Q ss_pred --CCC---hhhhhhcCceeeCcee
Q 031789 130 --LGN---KAFYEKCGLKQKGIHM 148 (153)
Q Consensus 130 --~~n---~~~y~k~Gf~~~~~~~ 148 (153)
..| +..++++||...+...
T Consensus 119 ~~~~~~~~~~~l~~~G~~~~g~~~ 142 (406)
T PF02388_consen 119 EGEENDELIENLKALGFRHQGFTK 142 (406)
T ss_dssp EE-S-THHHHHHHHTT-CCTS-SS
T ss_pred cCcchHHHHHHHHhcCceecCccc
Confidence 112 4788999999876543
No 146
>TIGR00667 aat leucyl/phenylalanyl-tRNA--protein transferase. The N-terminal residue controls the biological half-life of many proteins via the N-end rule pathway. This enzyme transfers a Leu or Phe to the amino end of certain proteins to enable degradation.
Probab=68.03 E-value=31 Score=22.48 Aligned_cols=113 Identities=11% Similarity=0.011 Sum_probs=63.5
Q ss_pred CCCcchHHHHHHhhhcCCCCCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeeecCCCceeEEeeEEe
Q 031789 16 ITDKSKGFIELLQQLSVCDSVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFLRNCGKVGHIEDVVV 95 (153)
Q Consensus 16 ~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~v 95 (153)
..+++ ++++..........|-.+++.+.+.++...+..+.+- +.++ +++||-.-...- +. ++.+.-.
T Consensus 61 n~~F~-~Vi~~Ca~~r~~gTWI~~e~~~aY~~LH~~G~AHSvE-vw~~--~~LvGGlYGv~i-------G~-~F~GESM- 127 (185)
T TIGR00667 61 NYAFG-QVIEGCASDRPEGTWISDELVEAYHRLHELGHAHSFE-VWQG--DELVGGMYGIAQ-------GG-LFCGESM- 127 (185)
T ss_pred cCcHH-HHHHHHcCCCCCCCCCCHHHHHHHHHHHHhCceEEEE-EEEC--CEEEEeeeeeee-------CC-eEEeccc-
Confidence 44566 4666655444344676666766666665555344443 3444 889986433311 11 1111111
Q ss_pred CcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCceeeCc
Q 031789 96 DASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQKGI 146 (153)
Q Consensus 96 ~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~~~~ 146 (153)
=.|...-+|..+-++.++.+..|+..+.+..... -.+++|-+.+.+
T Consensus 128 --Fs~~~nASKvAl~~L~~~L~~~g~~liDcQ~~t~---HL~slGa~ei~R 173 (185)
T TIGR00667 128 --FSRMTNASKTALLVFCEHFIRHGGQLIDCQVQNP---HLASLGAYEVPR 173 (185)
T ss_pred --cccCCChhHHHHHHHHHHHHHCCCcEEEECCCCH---HHHhcCCEEcCH
Confidence 1344466778888999999999988766544322 236667666543
No 147
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=67.46 E-value=6.7 Score=24.59 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=27.8
Q ss_pred HHHHHHHHHHcCCcEEEEEe----cCCC---hhhhhhcCceeeCc
Q 031789 109 IKFLTDHAHAVGCYKVILDC----SLGN---KAFYEKCGLKQKGI 146 (153)
Q Consensus 109 l~~~~~~~~~~g~~~~~~~~----~~~n---~~~y~k~Gf~~~~~ 146 (153)
++.+++.|+..|++++-+-. ...+ .++++..||+....
T Consensus 43 veEiieFak~mgykkiGiAfCiGL~~EA~~~~~iL~~~gFev~sV 87 (157)
T PF08901_consen 43 VEEIIEFAKRMGYKKIGIAFCIGLRKEARILAKILEANGFEVYSV 87 (157)
T ss_pred HHHHHHHHHHcCCCeeeehhhHhHHHHHHHHHHHHHHCCCEEEEE
Confidence 67788899999999887644 1222 38888999987753
No 148
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=66.82 E-value=2.6 Score=33.04 Aligned_cols=72 Identities=11% Similarity=0.104 Sum_probs=55.9
Q ss_pred eEEEEEEEeeeeeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcC-CcEEEEEecCCChhhhhhcCceee
Q 031789 68 IIATGSIFIEKKFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVG-CYKVILDCSLGNKAFYEKCGLKQK 144 (153)
Q Consensus 68 ~vG~~~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g-~~~~~~~~~~~n~~~y~k~Gf~~~ 144 (153)
+||.+++... .......+.--+|.-+.|-+|+|+-++.++.++.+... +......+...++..+++.||...
T Consensus 431 ~vggi~~r~f-----~~k~f~eivf~av~~~eqv~g~g~hlmnhlkd~~~~~~~i~~~ltyad~~aigyfkkqgfs~e 503 (720)
T KOG1472|consen 431 VVGGICFRPF-----PEKGFTEIVFCAVTTDEQVKGSGTHLMNHLKDYVRSSSTIDYALTYADEGAIGYFKKQGFSKE 503 (720)
T ss_pred cccccccCcC-----cccCCcceeeccccCcccccccCcCchhhHHHHhhccchHHHHHHhhhhcccccccCccchhh
Confidence 7777776643 22344566667899999999999999999999998875 666666677888899999999754
No 149
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=61.06 E-value=19 Score=24.19 Aligned_cols=46 Identities=13% Similarity=0.277 Sum_probs=35.5
Q ss_pred CchHHHHHHHHHHHHHHc--CCcEEEEEecCCC---hhhhhhcCceeeCce
Q 031789 102 MQLGKKIIKFLTDHAHAV--GCYKVILDCSLGN---KAFYEKCGLKQKGIH 147 (153)
Q Consensus 102 ~Gig~~ll~~~~~~~~~~--g~~~~~~~~~~~n---~~~y~k~Gf~~~~~~ 147 (153)
-|.|..++..+++..++. ++.++.+..+... +.+..+++|+...+.
T Consensus 92 AGMGG~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~~~~~~I~~E~ 142 (226)
T COG2384 92 AGMGGTLIREILEEGKEKLKGVERLILQPNIHTYELREWLSANSYEIKAET 142 (226)
T ss_pred eCCcHHHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHHhCCceeeeee
Confidence 499999999999988775 6777777655443 488889999977654
No 150
>PRK15312 antimicrobial resistance protein Mig-14; Provisional
Probab=60.89 E-value=56 Score=23.04 Aligned_cols=102 Identities=11% Similarity=0.100 Sum_probs=56.5
Q ss_pred EEEeCcCCCcchHHHHHHhhhc---CCCCC---ChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeeecC
Q 031789 10 QVRKLEITDKSKGFIELLQQLS---VCDSV---SDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFLRN 83 (153)
Q Consensus 10 ~ir~~~~~D~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~ 83 (153)
.+|++..=-.+ ++..++.++. +.... ..+...+.+..+...--...+++ +|+++|+-.+.....
T Consensus 156 ~v~~is~fS~~-Ela~iY~~Lf~~Rwg~~~~~~~~~~l~e~f~~Lr~l~fG~VLfl-----~~~PcA~qlv~k~eS---- 225 (298)
T PRK15312 156 SVKSVADCSSD-ELTHIFIELFRSRFGNTLSCYPADNLANFFSQLRHLLFGHILYI-----EGIPCAFDIVLKSES---- 225 (298)
T ss_pred EEEEhHHCCHH-HHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHhHHhheeeEEEE-----CCcceEEEEEEEecC----
Confidence 45555443333 3555544432 22222 45556555555433221222333 399999976664322
Q ss_pred CCceeEEe--eEEeCcCcccCchHHHH----HHHHHHHHHHcCCc
Q 031789 84 CGKVGHIE--DVVVDASARGMQLGKKI----IKFLTDHAHAVGCY 122 (153)
Q Consensus 84 ~~~~~~i~--~~~v~p~~rg~Gig~~l----l~~~~~~~~~~g~~ 122 (153)
....+++ ...+||+++.-..|+-| ++.+.+++++.|-.
T Consensus 226 -p~wi~~D~iNgG~Dpe~~~~spGSIL~WlNi~~A~~~~~~~~K~ 269 (298)
T PRK15312 226 -QMNVYFDVPNGAVKNECMPLSPGSILMWLNISRARHYCQERQKK 269 (298)
T ss_pred -CCcEEEecccCccCcccccCCCccEEEEecHHHHHHHHHhcCCc
Confidence 2222222 34699999999999987 46777777776644
No 151
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=59.56 E-value=69 Score=23.66 Aligned_cols=56 Identities=9% Similarity=-0.150 Sum_probs=37.5
Q ss_pred CceEEEEEEEeeeeeecCCCceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEe
Q 031789 66 GKIIATGSIFIEKKFLRNCGKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDC 128 (153)
Q Consensus 66 ~~~vG~~~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~ 128 (153)
+.+++.+.+.. ......++ .-+.+++|+.-+-...|.-.++++|+++|+....+.-
T Consensus 302 ~~~la~~l~~~------~g~~~~yl-y~gs~~~~~~~~~~~~l~~~~i~~a~~~G~~~ydf~G 357 (406)
T PF02388_consen 302 EIPLAGALFIY------YGDEAYYL-YGGSDEEYRKFYAPYLLQWEAIKYAKEKGIKRYDFGG 357 (406)
T ss_dssp EEEEEEEEEEE------ETTEEEEE-EEEE-CGCGGCTHHHHHHHHHHHHHHHTT-SEEEEEE
T ss_pred cceEEEEEEEE------ECCEEEEE-ECccchhhHhcCcchHHHHHHHHHHHHCCCCEEEeeC
Confidence 34555555542 22233343 5578899999998888888999999999999876633
No 152
>PF13862 BCIP: p21-C-terminal region-binding protein
Probab=58.55 E-value=49 Score=21.65 Aligned_cols=64 Identities=19% Similarity=0.191 Sum_probs=43.8
Q ss_pred CceEEEeCcCCCcchHHHHHHhhhcCCCCCChHHHHHHHHhhccCCCceEEEEEE-eCCCCceEEEEEEE
Q 031789 7 NRFQVRKLEITDKSKGFIELLQQLSVCDSVSDKQFEERFLELNSYGDDHIVCVIE-DDRSGKIIATGSIF 75 (153)
Q Consensus 7 ~~~~ir~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vG~~~~~ 75 (153)
-++.+....+.|.. ++..++.++.....+...++...+-.. + .....|-. +++++.+.|++++.
T Consensus 5 vdFe~~dp~~~D~h-gIk~LL~ql~~~~~~dl~~LadlIi~Q---~-~vGsvVK~~d~~e~dvyg~~Svl 69 (194)
T PF13862_consen 5 VDFEFFDPNEIDFH-GIKNLLQQLFLDAEIDLSELADLIIEQ---N-NVGSVVKQADGDEDDVYGFLSVL 69 (194)
T ss_pred EEEEeeCCChhhHH-HHHHHHHHhccccCcCHHHHHHHHHcC---C-CCceEEEecCCCCCcceEEEEEE
Confidence 35678888899999 799999998877667777666554432 2 22333433 43357888887776
No 153
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=58.46 E-value=14 Score=21.01 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCcee
Q 031789 106 KKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQ 143 (153)
Q Consensus 106 ~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~ 143 (153)
-.++..+.+.+++.|........++...++++..|+..
T Consensus 61 l~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~l~~ 98 (108)
T TIGR00377 61 LGVLLGRYKQVRRVGGQLVLVSVSPRVARLLDITGLLR 98 (108)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHhChhh
Confidence 35666677777777877656666666679999999875
No 154
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=55.57 E-value=18 Score=24.39 Aligned_cols=36 Identities=25% Similarity=0.192 Sum_probs=30.3
Q ss_pred cCcccCchHHHHHHHHHHHHHHcCCcEEEEEe-cCCC
Q 031789 97 ASARGMQLGKKIIKFLTDHAHAVGCYKVILDC-SLGN 132 (153)
Q Consensus 97 p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~-~~~n 132 (153)
|...|+--|..-+..++++|.+.|++.+.+.+ +..|
T Consensus 27 ~~~~GH~~G~~~~~~i~~~c~~~GI~~lT~YaFS~EN 63 (230)
T PRK14837 27 SFFEGHKEGLKRAKEIVKHSLKLGIKYLSLYVFSTEN 63 (230)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhh
Confidence 56678888999999999999999999998887 4444
No 155
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=53.82 E-value=22 Score=19.93 Aligned_cols=43 Identities=12% Similarity=0.098 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCceeeCce
Q 031789 105 GKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQKGIH 147 (153)
Q Consensus 105 g~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~~~~~ 147 (153)
|-.++..+...++..|.......+++...+.+.+.||...-..
T Consensus 58 ~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~~~~~~~ 100 (107)
T cd07042 58 AAEALEELVKDLRKRGVELYLAGLNPQVRELLERAGLLDEIGE 100 (107)
T ss_pred HHHHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHcCcHHHhCc
Confidence 4466666677777778776666667766799999998765443
No 156
>PF04555 XhoI: Restriction endonuclease XhoI; InterPro: IPR007636 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents type II restriction enzymes such as XhoI (3.1.21.4 from EC), which recognises the double-stranded sequence CTCGAG and cleave after C-1 [].; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=53.61 E-value=61 Score=21.22 Aligned_cols=38 Identities=16% Similarity=0.011 Sum_probs=28.8
Q ss_pred eEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEec
Q 031789 92 DVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCS 129 (153)
Q Consensus 92 ~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~ 129 (153)
.+-|+|+|+|..+.++---.|.....+.-+....+.+.
T Consensus 144 hFpv~p~F~g~SY~~Ry~ilc~rLv~e~lY~aa~l~~s 181 (196)
T PF04555_consen 144 HFPVDPEFKGASYLKRYEILCERLVQERLYTAACLITS 181 (196)
T ss_pred CCCccHHhcCCcHHHHHHHHHHHHHHhcccceeEEEEe
Confidence 35699999999999998888888777765655555443
No 157
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=53.52 E-value=21 Score=24.08 Aligned_cols=36 Identities=22% Similarity=0.228 Sum_probs=30.3
Q ss_pred cCcccCchHHHHHHHHHHHHHHcCCcEEEEEe-cCCC
Q 031789 97 ASARGMQLGKKIIKFLTDHAHAVGCYKVILDC-SLGN 132 (153)
Q Consensus 97 p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~-~~~n 132 (153)
|...|+--|..-+..++++|.+.|++.+.+.+ +..|
T Consensus 20 ~~~~GH~~G~~~~~~v~~~c~~~GI~~lT~yaFStEN 56 (226)
T TIGR00055 20 PRAYGHKAGVKSLRRILRWCANLGVECLTLYAFSTEN 56 (226)
T ss_pred ChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhh
Confidence 56678888899999999999999999998887 4444
No 158
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=53.03 E-value=27 Score=25.27 Aligned_cols=49 Identities=12% Similarity=0.180 Sum_probs=34.4
Q ss_pred eeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCC----hhhhhhcCceeeCce
Q 031789 91 EDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGN----KAFYEKCGLKQKGIH 147 (153)
Q Consensus 91 ~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n----~~~y~k~Gf~~~~~~ 147 (153)
+.+.+||.+ .|+..++++.+.+ . -..+++.|++.. .+.+.+ ||+.....
T Consensus 290 D~v~lDPPR--~G~~~~~l~~l~~-~----~~ivyvSC~p~tlarDl~~L~~-gY~l~~v~ 342 (362)
T PRK05031 290 STIFVDPPR--AGLDDETLKLVQA-Y----ERILYISCNPETLCENLETLSQ-THKVERFA 342 (362)
T ss_pred CEEEECCCC--CCCcHHHHHHHHc-c----CCEEEEEeCHHHHHHHHHHHcC-CcEEEEEE
Confidence 568899993 6899999888875 1 245777887744 355554 89877654
No 159
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=52.69 E-value=35 Score=23.17 Aligned_cols=41 Identities=17% Similarity=0.391 Sum_probs=32.0
Q ss_pred chHHHHHHHHHHHHHHcCCcEEEEEe--cCCChhhhhhcCcee
Q 031789 103 QLGKKIIKFLTDHAHAVGCYKVILDC--SLGNKAFYEKCGLKQ 143 (153)
Q Consensus 103 Gig~~ll~~~~~~~~~~g~~~~~~~~--~~~n~~~y~k~Gf~~ 143 (153)
......+..++..+.+.|+..+-+.+ .+.|+++++.+|-.+
T Consensus 192 ~m~~~~l~~iI~~l~~~g~~VvAivsD~g~~N~~~w~~Lgi~~ 234 (236)
T PF12017_consen 192 SMDADILKNIIEKLHEIGYNVVAIVSDMGSNNISLWRELGISE 234 (236)
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEECCCCcchHHHHHHcCCCC
Confidence 34467788899999888988766655 577899999999654
No 160
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=52.42 E-value=24 Score=19.87 Aligned_cols=39 Identities=23% Similarity=0.227 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCcee
Q 031789 105 GKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQ 143 (153)
Q Consensus 105 g~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~ 143 (153)
|-.++..+.+.+++.|..-....+++...+.+++.|+..
T Consensus 56 gl~~L~~l~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~ 94 (100)
T cd06844 56 GTGVLLERSRLAEAVGGQFVLTGISPAVRITLTESGLDK 94 (100)
T ss_pred HHHHHHHHHHHHHHcCCEEEEECCCHHHHHHHHHhCchh
Confidence 446677777777888877666666776678999988865
No 161
>COG2898 Uncharacterized conserved protein [Function unknown]
Probab=51.08 E-value=48 Score=25.56 Aligned_cols=47 Identities=17% Similarity=0.173 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCceeeCceeeee
Q 031789 105 GKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQKGIHMTMY 151 (153)
Q Consensus 105 g~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~~~~~~~~~ 151 (153)
-.+++....+.|..+|...+...+.+...+.|..+|++.....-+.+
T Consensus 271 ~~eli~~F~e~A~~~G~r~~fy~vs~~~~p~y~d~Gl~~~klGEeA~ 317 (538)
T COG2898 271 WPELIWAFLELADRHGWRPVFYGVSEEGAPLYADAGLRALKLGEEAV 317 (538)
T ss_pred hHHHHHHHHHHHHhcCCeeEEEEeCccccHHHHhcCcceeeccceEE
Confidence 46899999999999999999999999999999999999776554443
No 162
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=50.52 E-value=30 Score=20.64 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=18.7
Q ss_pred chHHHHHHHHHHHHHHcCCcEE
Q 031789 103 QLGKKIIKFLTDHAHAVGCYKV 124 (153)
Q Consensus 103 Gig~~ll~~~~~~~~~~g~~~~ 124 (153)
.++..++..++++|+++|+.++
T Consensus 5 Sla~aii~~i~~~A~~~~a~~V 26 (115)
T COG0375 5 SLAQAIIELIEEQAEKHGAKRV 26 (115)
T ss_pred HHHHHHHHHHHHHHHHcCCceE
Confidence 5788999999999999988544
No 163
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=50.39 E-value=19 Score=24.10 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=27.2
Q ss_pred CcccCchHHHHHHHHHHHHHHcCCcEEEEEe-cCCC
Q 031789 98 SARGMQLGKKIIKFLTDHAHAVGCYKVILDC-SLGN 132 (153)
Q Consensus 98 ~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~-~~~n 132 (153)
...|..-|..-+..+++++.+.|++.+.+.+ +..|
T Consensus 16 ~~~Gh~~G~~~l~~i~~~~~~~gI~~lTvYaFS~eN 51 (223)
T PF01255_consen 16 RSEGHRAGAEKLKEIVEWCLELGIKYLTVYAFSTEN 51 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCT-SEEEEEEEETTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEecchh
Confidence 3456667888899999999999999998887 4445
No 164
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=49.90 E-value=37 Score=19.25 Aligned_cols=38 Identities=18% Similarity=0.148 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCceee
Q 031789 107 KIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQK 144 (153)
Q Consensus 107 ~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~~ 144 (153)
.++..+.+.+++.|.......+++.-.+.+++.|+...
T Consensus 58 ~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~ 95 (106)
T TIGR02886 58 GVILGRYKKIKNEGGEVIVCNVSPAVKRLFELSGLFKI 95 (106)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhCCceE
Confidence 45556667777788776666666666788999998753
No 165
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=48.67 E-value=36 Score=28.80 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCceeeCceeee
Q 031789 106 KKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQKGIHMTM 150 (153)
Q Consensus 106 ~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~~~~~~~~ 150 (153)
..++....++|.++|..-+...+++....+|.+.||......-+.
T Consensus 298 ~~~i~~F~~~a~~~g~~p~fy~vse~~~~~~~~~G~~~lklGeEa 342 (1094)
T PRK02983 298 PQAIDAWLALARTYGWAPAVMGASEAGARAYREAGLSALELGDEA 342 (1094)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEECHHHHHHHHHcCCcEEEecceE
Confidence 478999999999999888888898888889999999976654443
No 166
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=48.44 E-value=33 Score=18.85 Aligned_cols=39 Identities=23% Similarity=0.262 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCcee
Q 031789 105 GKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQ 143 (153)
Q Consensus 105 g~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~ 143 (153)
|-.++..+.+.+++.|........++.-.+++++.|+..
T Consensus 55 g~~~L~~l~~~~~~~g~~v~i~~~~~~~~~~l~~~gl~~ 93 (99)
T cd07043 55 GLGVLLGAYKRARAAGGRLVLVNVSPAVRRVLELTGLDR 93 (99)
T ss_pred hHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCcce
Confidence 446777777778777866555555555568999988764
No 167
>PF10887 DUF2686: Protein of unknown function (DUF2686); InterPro: IPR021220 Some members in this family of proteins are annotated as yjfZ however currently no function is known.
Probab=47.96 E-value=84 Score=21.17 Aligned_cols=24 Identities=17% Similarity=0.099 Sum_probs=19.3
Q ss_pred cEEEEEecCCChhhhhhcCceeeC
Q 031789 122 YKVILDCSLGNKAFYEKCGLKQKG 145 (153)
Q Consensus 122 ~~~~~~~~~~n~~~y~k~Gf~~~~ 145 (153)
..+-+.+.++.-.+|.++||+.+.
T Consensus 220 p~IGl~ayp~tA~ihs~~Gy~viP 243 (276)
T PF10887_consen 220 PIIGLEAYPGTAEIHSKMGYEVIP 243 (276)
T ss_pred CeeeeeeCCCcHhhhhccCceeCC
Confidence 366777778778999999999764
No 168
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=47.28 E-value=29 Score=23.32 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=29.7
Q ss_pred cCcccCchHHHHHHHHHHHHHHcCCcEEEEEe-cCCC
Q 031789 97 ASARGMQLGKKIIKFLTDHAHAVGCYKVILDC-SLGN 132 (153)
Q Consensus 97 p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~-~~~n 132 (153)
|...|.--|..-+..+++++.+.|++.+.+.+ +..|
T Consensus 21 ~~~~GH~~G~~~~~~i~~~~~~~gI~~lTvyaFS~eN 57 (221)
T cd00475 21 DRIEGHKAGAEKLRDILRWCLELGVKEVTLYAFSTEN 57 (221)
T ss_pred ChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEeechhh
Confidence 55667778889999999999999999998887 4444
No 169
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=47.16 E-value=34 Score=20.22 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=18.2
Q ss_pred chHHHHHHHHHHHHHHcCCcEE
Q 031789 103 QLGKKIIKFLTDHAHAVGCYKV 124 (153)
Q Consensus 103 Gig~~ll~~~~~~~~~~g~~~~ 124 (153)
+|...+++.+.+.|+++|+.++
T Consensus 5 si~~~iv~~v~~~a~~~~~~~V 26 (114)
T PRK03681 5 TLCQRALELIEQQAAKHGAKRV 26 (114)
T ss_pred HHHHHHHHHHHHHHHHcCCCeE
Confidence 6788999999999999876544
No 170
>PF03376 Adeno_E3B: Adenovirus E3B protein; InterPro: IPR005041 Adenoviruses are medium-sized, non-enveloped viruses containing double-stranded DNA. They can cause a variety of diseases including pneumonia, cystitis, conjunctivitis and diarrhoea, all of which can be fatal to patients who are immunocompromised []. These viruses have many mechanisms to evade the host immune response, including several proteins which are expressed as part of the early transcription unit 3 (E3) []. One of the regions of E3, known as the E3B region, encodes three proteins known as 10.4K, 14.5K and 14.7K. Two of these proteins, 10.4K and 14.5K, form the RID complex (receptor internalisation and degradation) which protects the infected cell from host-induced lysis by clearing the the TNF and Fas receptors from the cell surface []. Other receptors, such as the epidermal growth factor receptor, are also known to be cleared by RID []. This entry represents the E3B region 10.4K protein, also known as the RID alpha subunit.; GO: 0016020 membrane
Probab=46.96 E-value=9.4 Score=19.97 Aligned_cols=14 Identities=14% Similarity=0.171 Sum_probs=10.4
Q ss_pred eCcCcccCchHHHH
Q 031789 95 VDASARGMQLGKKI 108 (153)
Q Consensus 95 v~p~~rg~Gig~~l 108 (153)
=+|+||.+.++..|
T Consensus 52 HhPqYrn~~iA~LL 65 (67)
T PF03376_consen 52 HHPQYRNQQIAALL 65 (67)
T ss_pred cCchhcCHHHHHHh
Confidence 46889988887644
No 171
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=46.68 E-value=28 Score=23.54 Aligned_cols=36 Identities=17% Similarity=0.176 Sum_probs=29.7
Q ss_pred cCcccCchHHHHHHHHHHHHHHcCCcEEEEEe-cCCC
Q 031789 97 ASARGMQLGKKIIKFLTDHAHAVGCYKVILDC-SLGN 132 (153)
Q Consensus 97 p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~-~~~n 132 (153)
|...|.--|..-+..+++++.+.|++.+.+.+ +..|
T Consensus 24 ~~~~GH~~G~~~l~~i~~~~~~lgIk~lTvYaFS~eN 60 (233)
T PRK14841 24 PRIKGHQRGAEVLHNTVKWSLELGIKYLTAFSFSTEN 60 (233)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCEEEEEeeeHhh
Confidence 55667778889999999999999999998877 4444
No 172
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=45.68 E-value=23 Score=20.08 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=20.5
Q ss_pred eEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEE
Q 031789 92 DVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVIL 126 (153)
Q Consensus 92 ~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~ 126 (153)
-+++||+--|.-++..+++.+....... +.++++
T Consensus 64 iiatD~D~EGe~Ia~~i~~~~~~~~~~~-~~R~~~ 97 (100)
T PF01751_consen 64 IIATDPDREGELIAWEIIELLGKNNPKL-IKRVWF 97 (100)
T ss_dssp EEEC-SSHHHHHHHHHHHHHHHHHSHHH-TTEEEE
T ss_pred eecCCCChHHHHHHHHHHHHHhHhCCCc-CCEEEE
Confidence 4567777777777777776666554433 455544
No 173
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=45.30 E-value=27 Score=23.95 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=29.8
Q ss_pred cCcccCchHHHHHHHHHHHHHHcCCcEEEEEe-cCCC
Q 031789 97 ASARGMQLGKKIIKFLTDHAHAVGCYKVILDC-SLGN 132 (153)
Q Consensus 97 p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~-~~~n 132 (153)
|...|+--|..-+..+++++.+.|++.+.+.+ +..|
T Consensus 39 ~~~~GH~~G~~~l~~i~~~c~~~gI~~lTvyaFS~EN 75 (253)
T PRK14832 39 PRIAGHRQGARTLKELLRCCKDWGIKALTAYAFSTEN 75 (253)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhh
Confidence 55667778889999999999999999998877 4444
No 174
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]
Probab=45.20 E-value=9.6 Score=25.17 Aligned_cols=40 Identities=10% Similarity=0.035 Sum_probs=30.9
Q ss_pred CchHHHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCceeeC
Q 031789 102 MQLGKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQKG 145 (153)
Q Consensus 102 ~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~~~ 145 (153)
+|||..-.+.++-+|... -...++.-..+++.|+|+....
T Consensus 121 KGIG~ETaDsILlYa~~r----p~FVvD~Yt~R~l~rlg~i~~k 160 (215)
T COG2231 121 KGIGKETADSILLYALDR----PVFVVDKYTRRLLSRLGGIEEK 160 (215)
T ss_pred CCcchhhHHHHHHHHhcC----cccchhHHHHHHHHHhcccccc
Confidence 699999999999998643 3344555557999999998763
No 175
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=44.97 E-value=32 Score=23.35 Aligned_cols=41 Identities=12% Similarity=0.125 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEec---CCC---hhhhhhcCceeeCc
Q 031789 106 KKIIKFLTDHAHAVGCYKVILDCS---LGN---KAFYEKCGLKQKGI 146 (153)
Q Consensus 106 ~~ll~~~~~~~~~~g~~~~~~~~~---~~n---~~~y~k~Gf~~~~~ 146 (153)
..-...+++..+..|++++.+.+- .-| .+||++.||+....
T Consensus 105 tt~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~ 151 (239)
T TIGR02990 105 VTPSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNF 151 (239)
T ss_pred eCHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeee
Confidence 344566666677779999988661 111 59999999998765
No 176
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=44.94 E-value=54 Score=22.47 Aligned_cols=40 Identities=20% Similarity=0.322 Sum_probs=30.5
Q ss_pred chHHHHHHHH-HHHHHHc-CCcEEEEEecCCChhhhhhcCcee
Q 031789 103 QLGKKIIKFL-TDHAHAV-GCYKVILDCSLGNKAFYEKCGLKQ 143 (153)
Q Consensus 103 Gig~~ll~~~-~~~~~~~-g~~~~~~~~~~~n~~~y~k~Gf~~ 143 (153)
|.|+..+.++ .....+. |...+.+++++ |..+-+.+|-..
T Consensus 10 G~GKTtiaalll~~l~~~~~~~VLvVDaDp-d~nL~~~LGve~ 51 (255)
T COG3640 10 GVGKTTIAALLLKRLLSKGGYNVLVVDADP-DSNLPEALGVEE 51 (255)
T ss_pred CccHHHHHHHHHHHHHhcCCceEEEEeCCC-CCChHHhcCCCC
Confidence 8999888887 5555555 57778888888 888888888665
No 177
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=44.75 E-value=34 Score=23.35 Aligned_cols=36 Identities=25% Similarity=0.266 Sum_probs=29.7
Q ss_pred cCcccCchHHHHHHHHHHHHHHcCCcEEEEEe-cCCC
Q 031789 97 ASARGMQLGKKIIKFLTDHAHAVGCYKVILDC-SLGN 132 (153)
Q Consensus 97 p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~-~~~n 132 (153)
|...|+--|..-+..+++++.+.|++.+.+.+ +..|
T Consensus 29 ~~~~GH~~G~~~l~~i~~~c~~lgI~~vTvYaFS~eN 65 (241)
T PRK14842 29 KRSEGHREGANAIDRLMDASLEYGLKNISLYAFSTEN 65 (241)
T ss_pred ChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhh
Confidence 55667778889999999999999999998877 4444
No 178
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=44.65 E-value=29 Score=23.41 Aligned_cols=36 Identities=25% Similarity=0.194 Sum_probs=28.9
Q ss_pred cCcccCchHHHHHHHHHHHHHHcCCcEEEEEe-cCCC
Q 031789 97 ASARGMQLGKKIIKFLTDHAHAVGCYKVILDC-SLGN 132 (153)
Q Consensus 97 p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~-~~~n 132 (153)
|...|+--|..-+..+++++.+.|++.+.+.+ +..|
T Consensus 14 ~~~~GH~~G~~~l~~i~~~c~~~GI~~lT~yaFS~eN 50 (229)
T PRK10240 14 IRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSEN 50 (229)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeeehhh
Confidence 44556677889999999999999999998887 4444
No 179
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=44.53 E-value=30 Score=24.67 Aligned_cols=36 Identities=22% Similarity=0.123 Sum_probs=30.3
Q ss_pred cCcccCchHHHHHHHHHHHHHHcCCcEEEEEe-cCCC
Q 031789 97 ASARGMQLGKKIIKFLTDHAHAVGCYKVILDC-SLGN 132 (153)
Q Consensus 97 p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~-~~~n 132 (153)
|...|+-.|...+..+++++.+.|++.+.+.+ +..|
T Consensus 40 ~~~~GH~~G~~~l~~il~~c~~lGIk~lTlYAFStEN 76 (322)
T PTZ00349 40 HSAIGHFMGSKALIQIIEICIKLKIKILSVFSFSLLN 76 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhh
Confidence 55668888999999999999999999998887 4444
No 180
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=44.11 E-value=46 Score=22.83 Aligned_cols=36 Identities=22% Similarity=0.208 Sum_probs=29.0
Q ss_pred cCcccCchHHHHHHHHHHHHHHcCCcEEEEEe-cCCC
Q 031789 97 ASARGMQLGKKIIKFLTDHAHAVGCYKVILDC-SLGN 132 (153)
Q Consensus 97 p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~-~~~n 132 (153)
+...|.--|..-+..+++++.+.|++.+.+.+ +..|
T Consensus 35 ~~~~GH~~G~~~l~~i~~~c~~lgI~~lTvYaFS~eN 71 (249)
T PRK14834 35 PRAAGHRAGVEALRRVVRAAGELGIGYLTLFAFSSEN 71 (249)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEEeccc
Confidence 44557777889999999999999999998887 4444
No 181
>COG3543 Uncharacterized conserved protein [Function unknown]
Probab=43.47 E-value=59 Score=19.85 Aligned_cols=38 Identities=8% Similarity=-0.003 Sum_probs=26.2
Q ss_pred eCcCcccCchHHHHHHHHHHHHHHc-CCcEEEEEecCCC
Q 031789 95 VDASARGMQLGKKIIKFLTDHAHAV-GCYKVILDCSLGN 132 (153)
Q Consensus 95 v~p~~rg~Gig~~ll~~~~~~~~~~-g~~~~~~~~~~~n 132 (153)
--.-|+|+|+....+..+-..+.+. .-+.+.+...++.
T Consensus 12 Cmq~y~GkGYS~~FveN~d~I~~rL~~ge~i~lV~g~DD 50 (135)
T COG3543 12 CMQGYQGKGYSPAFVENYDAIAERLKAGEDIKLVDGPDD 50 (135)
T ss_pred eeeecccccCCHHHHHHHHHHHHHhhcCCCeEEEecccc
Confidence 3467999999999998888877765 3344555444443
No 182
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=42.93 E-value=32 Score=23.57 Aligned_cols=36 Identities=25% Similarity=0.235 Sum_probs=29.4
Q ss_pred cCcccCchHHHHHHHHHHHHHHcCCcEEEEEe-cCCC
Q 031789 97 ASARGMQLGKKIIKFLTDHAHAVGCYKVILDC-SLGN 132 (153)
Q Consensus 97 p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~-~~~n 132 (153)
|...|.--|...+..+++++.+.|++.+.+.+ +..|
T Consensus 43 ~~~~GH~~G~~~l~~v~~~c~~~GIk~lTvYaFS~EN 79 (250)
T PRK14840 43 RAISGHYYGAKSLPQIVDTALHLGIEVLTLFAFSTEN 79 (250)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhh
Confidence 55667777889999999999999999998887 4444
No 183
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=42.67 E-value=36 Score=23.35 Aligned_cols=36 Identities=17% Similarity=0.051 Sum_probs=29.7
Q ss_pred cCcccCchHHHHHHHHHHHHHHcCCcEEEEEec-CCC
Q 031789 97 ASARGMQLGKKIIKFLTDHAHAVGCYKVILDCS-LGN 132 (153)
Q Consensus 97 p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~-~~n 132 (153)
+...|.--|..-+..+++++.+.|++.+.+.+- ..|
T Consensus 41 ~~~~GH~~G~~~l~~i~~~c~~~GI~~vT~yaFS~eN 77 (249)
T PRK14831 41 PRIMGHRRGVDALKDLLRCCKDWGIGALTAYAFSTEN 77 (249)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecchhh
Confidence 445677788899999999999999999999883 344
No 184
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=42.40 E-value=41 Score=22.82 Aligned_cols=42 Identities=17% Similarity=0.149 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEecCCCh-hhhhhcCceeeCc
Q 031789 105 GKKIIKFLTDHAHAVGCYKVILDCSLGNK-AFYEKCGLKQKGI 146 (153)
Q Consensus 105 g~~ll~~~~~~~~~~g~~~~~~~~~~~n~-~~y~k~Gf~~~~~ 146 (153)
|+-|+.++.+.|.+.|+.++++-++...+ .--++.|++.+-+
T Consensus 27 GkpmI~rV~e~a~~s~~~rvvVATDde~I~~av~~~G~~avmT 69 (247)
T COG1212 27 GKPMIVRVAERALKSGADRVVVATDDERIAEAVQAFGGEAVMT 69 (247)
T ss_pred CchHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCEEEec
Confidence 56788888888888888888887765443 5566667766544
No 185
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=42.14 E-value=24 Score=21.47 Aligned_cols=42 Identities=19% Similarity=0.220 Sum_probs=26.4
Q ss_pred CcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcC
Q 031789 98 SARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCG 140 (153)
Q Consensus 98 ~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~G 140 (153)
+=||-|+|+++++.+-+...+ .++-+-+.+|.-+-.--.|.|
T Consensus 6 DGQGGGiG~~iv~~lr~~~~~-~~eI~AlGTNa~AT~~MlKaG 47 (131)
T PF12953_consen 6 DGQGGGIGKQIVEKLRKELPE-EVEIIALGTNAIATSAMLKAG 47 (131)
T ss_pred eCCCChhHHHHHHHHHHhCCC-CcEEEEEehhHHHHHHHHHcC
Confidence 347889999999998876543 355555666544333333433
No 186
>PHA02126 hypothetical protein
Probab=41.91 E-value=57 Score=19.48 Aligned_cols=33 Identities=24% Similarity=0.300 Sum_probs=23.2
Q ss_pred CCcEEEEEecCCC-----hhhhhhcCceeeCceeeeec
Q 031789 120 GCYKVILDCSLGN-----KAFYEKCGLKQKGIHMTMYF 152 (153)
Q Consensus 120 g~~~~~~~~~~~n-----~~~y~k~Gf~~~~~~~~~~~ 152 (153)
|-.-+.+.+..-. .++|.|-||....+.-.||+
T Consensus 94 ~rppviif~t~~~~~~ir~alysktgfsk~~eftayyi 131 (153)
T PHA02126 94 GRPPVIIFNTQTPLTDIRIALYSKTGFSKSTEFTAYYV 131 (153)
T ss_pred CCCCEEEEeccCchHHHHHHHHhccCCCCCceeeeeee
Confidence 5555555554333 49999999999888777775
No 187
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=41.83 E-value=31 Score=19.96 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCceee
Q 031789 105 GKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQK 144 (153)
Q Consensus 105 g~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~~ 144 (153)
|-.++..+.+.++..|.......+++.-.+.+++.||...
T Consensus 65 gi~~L~~~~~~~~~~g~~~~l~~~~~~v~~~l~~~~~~~~ 104 (117)
T PF01740_consen 65 GIQALVDIIKELRRRGVQLVLVGLNPDVRRILERSGLIDF 104 (117)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEESHHHHHHHHHHHTTGHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCChh
Confidence 3457777888888888887777777666788888888743
No 188
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=41.66 E-value=39 Score=22.92 Aligned_cols=36 Identities=25% Similarity=0.137 Sum_probs=29.2
Q ss_pred cCcccCchHHHHHHHHHHHHHHcCCcEEEEEe-cCCC
Q 031789 97 ASARGMQLGKKIIKFLTDHAHAVGCYKVILDC-SLGN 132 (153)
Q Consensus 97 p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~-~~~n 132 (153)
|...|+--|..-+..+++++.+.|++.+.+.+ +..|
T Consensus 25 ~~~~GH~~G~~~l~~~~~~c~~~gI~~lTvyaFS~eN 61 (233)
T PRK14833 25 ARAAGHKKGVKTLREITIWCANHKLECLTLYAFSTEN 61 (233)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecchhh
Confidence 45567777889999999999999999998877 4444
No 189
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=41.37 E-value=47 Score=19.67 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=20.2
Q ss_pred chHHHHHHHHHHHHHHcCCcE---EEEEe
Q 031789 103 QLGKKIIKFLTDHAHAVGCYK---VILDC 128 (153)
Q Consensus 103 Gig~~ll~~~~~~~~~~g~~~---~~~~~ 128 (153)
+|+..+++.+.+.++++++.+ +.+.+
T Consensus 5 sia~~iv~~v~~~a~~~~~~~V~~V~l~i 33 (115)
T TIGR00100 5 SLAEAMLEIVEEQAEKHQAKKVTRVTLEI 33 (115)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEEEEE
Confidence 688899999999998887665 45544
No 190
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=41.21 E-value=38 Score=23.10 Aligned_cols=36 Identities=19% Similarity=0.166 Sum_probs=29.8
Q ss_pred cCcccCchHHHHHHHHHHHHHHcCCcEEEEEe-cCCC
Q 031789 97 ASARGMQLGKKIIKFLTDHAHAVGCYKVILDC-SLGN 132 (153)
Q Consensus 97 p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~-~~~n 132 (153)
|...|.--|...+..+++++.+.|++.+.+.+ +..|
T Consensus 35 ~~~~GH~~G~~~l~~iv~~c~~~gI~~vTvYaFS~eN 71 (243)
T PRK14829 35 KRTEGHKAGEPVLFDVVAGAIEAGVPYLSLYTFSTEN 71 (243)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHcCCCEEEEeeecchh
Confidence 55667778889999999999999999998887 3444
No 191
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=41.17 E-value=33 Score=16.65 Aligned_cols=18 Identities=22% Similarity=0.360 Sum_probs=11.1
Q ss_pred eEEEEEEeCCCCceEEEEEE
Q 031789 55 HIVCVIEDDRSGKIIATGSI 74 (153)
Q Consensus 55 ~~~~~~~~~~~~~~vG~~~~ 74 (153)
..+.+..+ +++++|.+..
T Consensus 31 ~~~~V~d~--~~~~~G~is~ 48 (57)
T PF00571_consen 31 SRLPVVDE--DGKLVGIISR 48 (57)
T ss_dssp SEEEEEST--TSBEEEEEEH
T ss_pred cEEEEEec--CCEEEEEEEH
Confidence 33444434 4999998764
No 192
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=40.51 E-value=50 Score=19.87 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=18.7
Q ss_pred chHHHHHHHHHHHHHHcCCcEEE
Q 031789 103 QLGKKIIKFLTDHAHAVGCYKVI 125 (153)
Q Consensus 103 Gig~~ll~~~~~~~~~~g~~~~~ 125 (153)
+|...+++.+.+.|+++|..++.
T Consensus 5 si~~~il~~v~~~a~~~~~~rV~ 27 (124)
T PRK00762 5 SMACEIVEAVIDTAEKNNATEVT 27 (124)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEE
Confidence 67889999999999988776543
No 193
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=40.03 E-value=39 Score=23.01 Aligned_cols=36 Identities=22% Similarity=0.258 Sum_probs=29.4
Q ss_pred cCcccCchHHHHHHHHHHHHHHcCCcEEEEEe-cCCC
Q 031789 97 ASARGMQLGKKIIKFLTDHAHAVGCYKVILDC-SLGN 132 (153)
Q Consensus 97 p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~-~~~n 132 (153)
|...|.--|..-+..+++++.+.|++.+.+.+ +..|
T Consensus 30 ~~~~GH~~G~~~l~~i~~~c~~~GI~~lTvYaFS~EN 66 (239)
T PRK14839 30 PRLAGHRAGVEAIRRVVEAAPDLGIGTLTLYAFSSDN 66 (239)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEechhh
Confidence 45567778889999999999999999998877 4444
No 194
>COG1658 Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]
Probab=39.89 E-value=26 Score=21.27 Aligned_cols=22 Identities=23% Similarity=0.576 Sum_probs=18.8
Q ss_pred EEeCcCcccCchHHHHHHHHHH
Q 031789 93 VVVDASARGMQLGKKIIKFLTD 114 (153)
Q Consensus 93 ~~v~p~~rg~Gig~~ll~~~~~ 114 (153)
+.+||+++|.-|.+++.+++-.
T Consensus 60 ILTD~D~~Ge~Irk~l~~~l~~ 81 (127)
T COG1658 60 ILTDPDRKGERIRKKLKEYLPG 81 (127)
T ss_pred EEeCCCcchHHHHHHHHHHhcc
Confidence 5699999999999888887765
No 195
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=39.57 E-value=53 Score=19.40 Aligned_cols=26 Identities=15% Similarity=0.265 Sum_probs=19.7
Q ss_pred chHHHHHHHHHHHHHHcCCcE---EEEEe
Q 031789 103 QLGKKIIKFLTDHAHAVGCYK---VILDC 128 (153)
Q Consensus 103 Gig~~ll~~~~~~~~~~g~~~---~~~~~ 128 (153)
+|...+++.+.+.|+++|..+ +.+.+
T Consensus 5 si~~~iv~~v~~~a~~~~~~rV~~V~l~i 33 (113)
T PRK12380 5 SLCQSAVEIIQRQAEQHDVKRVTAVWLEI 33 (113)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEEEEE
Confidence 678899999999998886654 44544
No 196
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=38.80 E-value=53 Score=16.25 Aligned_cols=23 Identities=17% Similarity=0.125 Sum_probs=18.6
Q ss_pred cCcccCchHHHHHHHHHHHHHHc
Q 031789 97 ASARGMQLGKKIIKFLTDHAHAV 119 (153)
Q Consensus 97 p~~rg~Gig~~ll~~~~~~~~~~ 119 (153)
.=||+.-+|..|.+.+-+...+.
T Consensus 4 elYR~stlG~aL~dtLDeli~~~ 26 (49)
T PF02268_consen 4 ELYRRSTLGIALTDTLDELIQEG 26 (49)
T ss_dssp CGGGCSHHHHHHHHHHHHHHHTT
T ss_pred HHHHcchHHHHHHHHHHHHHHcC
Confidence 34899999999999888877654
No 197
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=38.47 E-value=52 Score=22.68 Aligned_cols=36 Identities=19% Similarity=0.152 Sum_probs=28.6
Q ss_pred cCc-ccCchHHHHHHHHHHHHHHcCCcEEEEEe-cCCC
Q 031789 97 ASA-RGMQLGKKIIKFLTDHAHAVGCYKVILDC-SLGN 132 (153)
Q Consensus 97 p~~-rg~Gig~~ll~~~~~~~~~~g~~~~~~~~-~~~n 132 (153)
|.. .|.--|..-+..+++++.+.|++.+.+.+ +..|
T Consensus 47 ~~~~~GH~~G~~~l~~~~~~~~~~gIk~lTvYaFS~eN 84 (256)
T PRK14828 47 TDVSQGHRAGAAKIGEFLGWCDETDVNVVTLYLLSTDN 84 (256)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEEhhh
Confidence 444 66777889999999999999999998877 4444
No 198
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=38.45 E-value=46 Score=23.22 Aligned_cols=36 Identities=17% Similarity=0.140 Sum_probs=28.6
Q ss_pred cCcccCchHHHHHHHHHHHHHHcCCcEEEEEe-cCCC
Q 031789 97 ASARGMQLGKKIIKFLTDHAHAVGCYKVILDC-SLGN 132 (153)
Q Consensus 97 p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~-~~~n 132 (153)
|...|.--|..-+..+++++.+.|++.+.+.+ +..|
T Consensus 62 ~~~~GH~~G~~~l~~i~~~c~~lGIk~lTvYaFS~EN 98 (275)
T PRK14835 62 QREMGHEFGVQKAYEVLEWCLELGIPTVTIWVFSTDN 98 (275)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEEccc
Confidence 44456677888999999999999999998877 4444
No 199
>cd01027 TOPRIM_RNase_M5_like TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea. RNase M5 catalyzes the maturation of 5S rRNA in low G+C Gram-positive bacteria. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=38.27 E-value=22 Score=19.56 Aligned_cols=22 Identities=23% Similarity=0.543 Sum_probs=18.2
Q ss_pred eEEeCcCcccCchHHHHHHHHH
Q 031789 92 DVVVDASARGMQLGKKIIKFLT 113 (153)
Q Consensus 92 ~~~v~p~~rg~Gig~~ll~~~~ 113 (153)
-+.+||+..|+.+.+++.+.+.
T Consensus 49 IiltD~D~aG~~i~~~~~~~l~ 70 (81)
T cd01027 49 IILTDPDRKGEKIRKKLSEYLS 70 (81)
T ss_pred EEEECCCHHHHHHHHHHHHHhc
Confidence 4679999999999888887764
No 200
>PF13466 STAS_2: STAS domain
Probab=37.22 E-value=61 Score=17.19 Aligned_cols=38 Identities=21% Similarity=0.162 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCc
Q 031789 104 LGKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGL 141 (153)
Q Consensus 104 ig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf 141 (153)
-|-+++-.+.+.+++.|........++...++.+..|+
T Consensus 42 agl~lL~~~~~~~~~~g~~~~l~~~~~~~~~ll~~~gl 79 (80)
T PF13466_consen 42 AGLQLLLAAARRARARGRQLRLTGPSPALRRLLELLGL 79 (80)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhCc
Confidence 34467777777777777665555555555677777775
No 201
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=36.80 E-value=46 Score=22.72 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=29.4
Q ss_pred cCcccCchHHHHHHHHHHHHHHcCCcEEEEEe-cCCC
Q 031789 97 ASARGMQLGKKIIKFLTDHAHAVGCYKVILDC-SLGN 132 (153)
Q Consensus 97 p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~-~~~n 132 (153)
|...|.--|..-+..+++++.+.|++.+.+.+ +..|
T Consensus 31 ~~~~GH~~G~~~l~~i~~~~~~~gI~~lT~YaFS~EN 67 (242)
T PRK14838 31 ERSFGHQAGAETVHIITEEAARLGVKFLTLYTFSTEN 67 (242)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeechhh
Confidence 45567777889999999999999999998887 4444
No 202
>PF02794 HlyC: RTX toxin acyltransferase family; InterPro: IPR003996 Secretion of virulence factors in Gram-negative bacteria involves transportation of the protein across two membranes to reach the cell exterior []. Four principal exotoxin secretion systems have been described. In the type II and IV secretion systems, toxins are first exported to the periplasm by way of a cleaved N-terminal signal sequence; a second set of proteins is used for extracellular transport (type II), or the C terminus of the exotoxin itself is used (type IV). Type III secretion involves at least 20 molecules that assemble into a needle; effector proteins are then translocated through this without need of a signal sequence. In the Type I system, a complete channel is formed through both membranes, and the secretion signal is carried on the C terminus of the exotoxin. The RTX (repeats in toxin) family of cytolytic toxins belong to the Type I secretion system, and are important virulence factors in Gram-negative bacteria. As well as the C-terminal signal sequence, several glycine-rich repeats are also found. These are essential for binding calcium, and are critical for the biological activity of the secreted toxins []. All RTX toxin operons exist in the order rtxCABD, RtxA protein being the structural component of the exotoxin, both RtxB and D being required for its export from the bacterial cell; RtxC is an acyl-carrier-protein-dependent acyl- modification enzyme, required to convert RtxA to its active form []. Escherichia coli haemolysin (HlyA) is often quoted as the model for RTX toxins. Recent work on its relative rtxC gene product HlyC [] has revealed that it provides the acylation aspect for post-translational modification of two internal lysine residues in the HlyA protein. Other residues, including His23 and two conserved tyrosine residues, also appear to be important []. ; GO: 0016746 transferase activity, transferring acyl groups, 0009404 toxin metabolic process, 0005737 cytoplasm
Probab=36.56 E-value=1e+02 Score=18.87 Aligned_cols=85 Identities=14% Similarity=0.090 Sum_probs=44.0
Q ss_pred HHHHHhhhcCCCCCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeee-----------e----eecCCCce
Q 031789 23 FIELLQQLSVCDSVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEK-----------K----FLRNCGKV 87 (153)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~-----------~----~~~~~~~~ 87 (153)
+.-++.....+..++...+...+......+ .+.++. . +|.+||+++...-. . ..+.++..
T Consensus 6 iv~L~~~sp~hr~~~l~~l~~~~lpai~~~-Q~~l~~--~--~g~Pvaf~~WA~ls~e~e~~~l~~~~~l~~~dW~sG~r 80 (133)
T PF02794_consen 6 IVWLWMHSPLHRDWPLSDLEQLLLPAIKLG-QYRLYS--E--DGRPVAFCSWAFLSEEAEARYLEDPRSLSPEDWNSGDR 80 (133)
T ss_pred HHHHHhCChhhccCcHHHHHHHHHHHHhhC-cEEEEE--e--CCeEEEEEEhhcCCHHHHHHHHcCCCCCCchhcCCCCe
Confidence 334444444344566677776655544433 333333 4 39999998655310 0 11233444
Q ss_pred eEEeeEEeCcCcccCchHHHHHHHHHHHHH
Q 031789 88 GHIEDVVVDASARGMQLGKKIIKFLTDHAH 117 (153)
Q Consensus 88 ~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~ 117 (153)
.++-. +|.|- |-+..+++.+.+..+
T Consensus 81 lWiiD-~iAPf----G~~~~~~~~lr~~~f 105 (133)
T PF02794_consen 81 LWIID-WIAPF----GHARAMVRDLRRNLF 105 (133)
T ss_pred EEEEE-EECCC----CcHHHHHHHHHhccC
Confidence 44333 35563 557777777766543
No 203
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=36.48 E-value=83 Score=19.18 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=19.6
Q ss_pred cCchHHHHHHHHHHHHHHcCCcEE
Q 031789 101 GMQLGKKIIKFLTDHAHAVGCYKV 124 (153)
Q Consensus 101 g~Gig~~ll~~~~~~~~~~g~~~~ 124 (153)
..|+.+-++..+++.+++.|+..+
T Consensus 38 hp~L~~Dllge~v~a~h~~Girv~ 61 (132)
T PF14871_consen 38 HPGLKRDLLGEQVEACHERGIRVP 61 (132)
T ss_pred CCCCCcCHHHHHHHHHHHCCCEEE
Confidence 455668999999999999998754
No 204
>PF09907 DUF2136: Uncharacterized protein conserved in bacteria (DUF2136); InterPro: IPR018669 HigB (YgjN) is the toxin of the HigB-HigA toxin-antitoxin system, acting as a translation-dependent mRNA interferase. HigB inhibits protein synthesis by cleaving translated mRNAs within the coding region []. ; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=35.85 E-value=77 Score=17.27 Aligned_cols=68 Identities=12% Similarity=0.127 Sum_probs=37.0
Q ss_pred HHHHHhhhcCCCCCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeeecCCCceeEEeeEEeCcCcc
Q 031789 23 FIELLQQLSVCDSVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFLRNCGKVGHIEDVVVDASAR 100 (153)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~v~p~~r 100 (153)
+..++........-++.++.+.+.....-.+...++=+..+ +=++|..+.+. ....+|..+.++.+|=
T Consensus 6 L~~W~~~~~~a~w~~~~elk~~f~~ad~v~~~~~vFnI~GN-~yRlI~~I~f~---------~~~v~Ir~igTHaEYD 73 (76)
T PF09907_consen 6 LEAWYREVKKADWKNPAELKQQFPSADIVKNNRVVFNIGGN-KYRLIAKIDFE---------RQIVYIRFIGTHAEYD 73 (76)
T ss_pred HHHHHHHHHHccCCCHHHHHHHCcchhhhcCCEEEEEcCCC-cEEEEEEEEeC---------ceEEEEEEeecHHHhc
Confidence 45555555544445667776665443332223333333221 23566665554 4468888888888774
No 205
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=35.68 E-value=41 Score=22.05 Aligned_cols=28 Identities=14% Similarity=0.250 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEecCCC
Q 031789 105 GKKIIKFLTDHAHAVGCYKVILDCSLGN 132 (153)
Q Consensus 105 g~~ll~~~~~~~~~~g~~~~~~~~~~~n 132 (153)
|+.++.+.++.+.+.|+..+.+.+....
T Consensus 30 g~piI~~~l~~l~~~Gi~~I~iv~~~~~ 57 (217)
T cd04197 30 NVPLIDYTLEFLALNGVEEVFVFCCSHS 57 (217)
T ss_pred CEehHHHHHHHHHHCCCCeEEEEeCCCH
Confidence 4578899999888889988888776433
No 206
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=35.50 E-value=52 Score=19.37 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=17.3
Q ss_pred chHHHHHHHHHHHHHHcCCcEE
Q 031789 103 QLGKKIIKFLTDHAHAVGCYKV 124 (153)
Q Consensus 103 Gig~~ll~~~~~~~~~~g~~~~ 124 (153)
+|+..++..+.+.|++++..++
T Consensus 5 si~~~iv~~v~~~a~~~~~~kV 26 (113)
T PF01155_consen 5 SIAQSIVEIVEEEAEENGAKKV 26 (113)
T ss_dssp HHHHHHHHHHHHHHHCTT-SEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEE
Confidence 6788999999999998766544
No 207
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=35.10 E-value=72 Score=18.15 Aligned_cols=38 Identities=8% Similarity=0.072 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCcee
Q 031789 106 KKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQ 143 (153)
Q Consensus 106 ~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~ 143 (153)
-.++..+.+.++..|..-.....++.-.+.+++.|+..
T Consensus 59 ~~~l~~~~~~~~~~g~~l~l~g~~~~v~~~l~~~gl~~ 96 (109)
T cd07041 59 ARHLLRLARALRLLGARTILTGIRPEVAQTLVELGIDL 96 (109)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhCCCh
Confidence 35677777778888877766666776678888888765
No 208
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=34.98 E-value=30 Score=21.22 Aligned_cols=40 Identities=18% Similarity=0.341 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEecCCCh-hhhhhcCceee
Q 031789 105 GKKIIKFLTDHAHAVGCYKVILDCSLGNK-AFYEKCGLKQK 144 (153)
Q Consensus 105 g~~ll~~~~~~~~~~g~~~~~~~~~~~n~-~~y~k~Gf~~~ 144 (153)
|+.|+.++++.+.+.++..+++.+..... ..+.+.+...+
T Consensus 23 g~~li~~~l~~l~~~~~~~Ivvv~~~~~~~~~~~~~~~~~v 63 (160)
T PF12804_consen 23 GKPLIERVLEALREAGVDDIVVVTGEEEIYEYLERYGIKVV 63 (160)
T ss_dssp TEEHHHHHHHHHHHHTESEEEEEESTHHHHHHHTTTTSEEE
T ss_pred CccHHHHHHHHhhccCCceEEEecChHHHHHHHhccCceEE
Confidence 45789999999988889999988876322 33455665543
No 209
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=34.61 E-value=51 Score=23.30 Aligned_cols=36 Identities=22% Similarity=0.243 Sum_probs=29.4
Q ss_pred cCcccCchHHHHHHHHHHHHHHcCCcEEEEEe-cCCC
Q 031789 97 ASARGMQLGKKIIKFLTDHAHAVGCYKVILDC-SLGN 132 (153)
Q Consensus 97 p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~-~~~n 132 (153)
+...|+--|..-+..++++|.+.|++.+.+.+ +..|
T Consensus 88 ~~~~GH~~G~~~l~~v~~~c~~lGI~~lTvYaFStEN 124 (296)
T PRK14827 88 ARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTEN 124 (296)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHcCCCEEEEeeecchh
Confidence 55667777889999999999999999999888 3445
No 210
>PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=34.23 E-value=52 Score=19.88 Aligned_cols=32 Identities=22% Similarity=0.478 Sum_probs=21.5
Q ss_pred HHHHHHHHcCCcEEEEEecCCChhhhhhcCcee
Q 031789 111 FLTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQ 143 (153)
Q Consensus 111 ~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~ 143 (153)
.++.=|++.|+..+.+ |.....++|++.++.-
T Consensus 11 qIl~GAk~EGFrT~~i-c~~~r~~~Y~~f~~iD 42 (124)
T PF06849_consen 11 QILDGAKDEGFRTIAI-CQKGREKFYRRFPFID 42 (124)
T ss_dssp HHHHHHHHTT--EEEE-EETTCHHHHHTTTT-S
T ss_pred HHhhhHHHcCCcEEEE-ECCCCcchhhhcCcCc
Confidence 4566778889988766 4566689999999653
No 211
>PF03588 Leu_Phe_trans: Leucyl/phenylalanyl-tRNA protein transferase; InterPro: IPR004616 Leucyl/phenylalanyl-tRNA--protein transferase 2.3.2.6 from EC transfers a Leu or Phe to the amino end of certain proteins to enable degradation. The N-terminal residue controls the biological half-life of many proteins via the N-end rule pathway.; GO: 0008914 leucyltransferase activity, 0030163 protein catabolic process; PDB: 2Z3L_A 2Z3O_A 2Z3P_A 2DPT_B 2Z3M_B 2Z3N_B 2DPS_B 2Z3K_B 2CXA_A.
Probab=34.21 E-value=1.3e+02 Score=19.42 Aligned_cols=111 Identities=15% Similarity=0.055 Sum_probs=61.3
Q ss_pred cCCCcchHHHHHHhhhcC--CCCCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeeecCCCceeE-Ee
Q 031789 15 EITDKSKGFIELLQQLSV--CDSVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFLRNCGKVGH-IE 91 (153)
Q Consensus 15 ~~~D~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~-i~ 91 (153)
-..+++ ++++....... ...|-.+++.+.+.++...+..+.+ -+.++ +++||-.....- +.... ..
T Consensus 58 ~n~~F~-~Vi~~Ca~~~~~~~~TWI~~~~~~aY~~Lh~~G~aHSv-Evw~~--~~LvGGlyGv~i-------G~~F~GES 126 (173)
T PF03588_consen 58 INTAFE-EVIRACAEPRRGQDGTWITPEMIEAYTELHELGYAHSV-EVWQG--GELVGGLYGVAI-------GGVFFGES 126 (173)
T ss_dssp ESS-HH-HHHHHHHTSS--STGTTS-HHHHHHHHHHHHTTSEEEE-EEEET--TEEEEEEEEEEE-------TTEEEEEE
T ss_pred ECCCHH-HHHHHHccCCCCCCCCCcCHHHHHHHHHHHHcCeeEEE-eeecC--CeeEEeeeCEEE-------CCEEEecc
Confidence 345566 56666665542 2357667777777766665533444 34444 788875433321 22222 22
Q ss_pred eEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCceee
Q 031789 92 DVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQK 144 (153)
Q Consensus 92 ~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~~ 144 (153)
.+... .+-+|..+-.+.++.++.|+..+.+.... ...+++|-+.+
T Consensus 127 MFs~~-----~~ASKval~~L~~~L~~~g~~liD~Q~~~---~hl~slGa~~i 171 (173)
T PF03588_consen 127 MFSRV-----SNASKVALVALVEHLRQCGFQLIDCQMPT---PHLASLGAKEI 171 (173)
T ss_dssp EEESS-----TTHHHHHHHHHHHHHHHTT--EEEEES-----HHHHHTTEEEE
T ss_pred ccccC-----CChHHHHHHHHHHHHHHCCCcEEEeccCC---HHHHhcCCEeC
Confidence 23322 46688889999999999998877765532 24466776654
No 212
>KOG3112 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.20 E-value=1.2e+02 Score=20.38 Aligned_cols=28 Identities=18% Similarity=0.154 Sum_probs=19.5
Q ss_pred chHHHHHHHHHHHHHHcCCcEEEEEecC
Q 031789 103 QLGKKIIKFLTDHAHAVGCYKVILDCSL 130 (153)
Q Consensus 103 Gig~~ll~~~~~~~~~~g~~~~~~~~~~ 130 (153)
+-....-+.+.+++++.|+.++.+-...
T Consensus 96 ~~~~~F~e~l~~~~kSSG~~~VIVLSss 123 (262)
T KOG3112|consen 96 RHTAHFQEELVELLKSSGARRVIVLSSS 123 (262)
T ss_pred hhhhHHHHHHHHHHHhcCCceEEEEecc
Confidence 4445556677788888899887765543
No 213
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=34.20 E-value=1.9e+02 Score=21.16 Aligned_cols=61 Identities=13% Similarity=0.172 Sum_probs=40.2
Q ss_pred EEeeEEeCcCcccC----chH-HHHHHHHHHHHHHc--CCcEEEEEecCCChhhhhhcCceeeCceee
Q 031789 89 HIEDVVVDASARGM----QLG-KKIIKFLTDHAHAV--GCYKVILDCSLGNKAFYEKCGLKQKGIHMT 149 (153)
Q Consensus 89 ~i~~~~v~p~~rg~----Gig-~~ll~~~~~~~~~~--g~~~~~~~~~~~n~~~y~k~Gf~~~~~~~~ 149 (153)
.+..+++||.|=+. |.+ .+|...+++.+.+. +-..+.+.+.......++..||...+....
T Consensus 264 ~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~~~~~~~~~f~v~~~~~~ 331 (347)
T COG1041 264 SVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDPRHELEELGFKVLGRFTM 331 (347)
T ss_pred ccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcchhhHhhcCceEEEEEEE
Confidence 47889999988544 222 46777777777664 223344434444578999999998876543
No 214
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=34.07 E-value=87 Score=21.50 Aligned_cols=41 Identities=12% Similarity=-0.004 Sum_probs=31.9
Q ss_pred eEEeeEEeCcCcccCchHHHHHHHHHHHHHHc-CCcEEEEEe
Q 031789 88 GHIEDVVVDASARGMQLGKKIIKFLTDHAHAV-GCYKVILDC 128 (153)
Q Consensus 88 ~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~-g~~~~~~~~ 128 (153)
.|+++.-+-|+|-..|++++.++....+.... |-..+.+..
T Consensus 144 tYlgs~r~vPnYNvMGvAKAaLEasvRyLA~dlG~~gIRVNa 185 (259)
T COG0623 144 TYLGSERVVPNYNVMGVAKAALEASVRYLAADLGKEGIRVNA 185 (259)
T ss_pred EeccceeecCCCchhHHHHHHHHHHHHHHHHHhCccCeEEee
Confidence 45666778999999999999999999987654 666555543
No 215
>KOG4387 consensus Ornithine decarboxylase antizyme [Amino acid transport and metabolism]
Probab=34.01 E-value=1.4e+02 Score=19.52 Aligned_cols=54 Identities=11% Similarity=-0.055 Sum_probs=37.7
Q ss_pred EEeCcCcccCchHHHHHHHHHHHHHHc-CCcEEEEEecCCC------hhhhhhcCceeeCc
Q 031789 93 VVVDASARGMQLGKKIIKFLTDHAHAV-GCYKVILDCSLGN------KAFYEKCGLKQKGI 146 (153)
Q Consensus 93 ~~v~p~~rg~Gig~~ll~~~~~~~~~~-g~~~~~~~~~~~n------~~~y~k~Gf~~~~~ 146 (153)
+..-|+-.=-+.-++=+-.++++|.+. .+.++.+....++ .+-+.=.||+++..
T Consensus 105 ~~~IPdq~l~~gsKe~lvalLEfAEekl~~d~Vfi~F~K~R~dr~~LlrtfsyvGFEpvrp 165 (191)
T KOG4387|consen 105 FFEIPDQALDVGSKEGLVALLEFAEEKLHVDKVFICFDKNREDRAALLRTFSYVGFEPVRP 165 (191)
T ss_pred EEecCcchhcccchHhHHHHHHHHHHhhccceEEEEEecCccChHhhhhhehcceeeecCC
Confidence 344555555566677788888888876 8999988885544 25555689988754
No 216
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=33.96 E-value=84 Score=20.35 Aligned_cols=45 Identities=20% Similarity=0.206 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHHcCCcEEEEEecCCC---hhhhhhcCceeeCceee
Q 031789 104 LGKKIIKFLTDHAHAVGCYKVILDCSLGN---KAFYEKCGLKQKGIHMT 149 (153)
Q Consensus 104 ig~~ll~~~~~~~~~~g~~~~~~~~~~~n---~~~y~k~Gf~~~~~~~~ 149 (153)
-|+.|+.++++.+++ .+..+.+.++++. ..+.++.|++.....-+
T Consensus 25 ~GkpLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~gv~vi~tpG~ 72 (177)
T COG2266 25 CGKPLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESVGVKVIETPGE 72 (177)
T ss_pred CCccHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhcCceEEEcCCC
Confidence 367899999998877 6788888776655 47778888777655433
No 217
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=33.94 E-value=64 Score=24.18 Aligned_cols=52 Identities=19% Similarity=0.283 Sum_probs=37.6
Q ss_pred eeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCC----hhhhhhcCceeeCce
Q 031789 91 EDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGN----KAFYEKCGLKQKGIH 147 (153)
Q Consensus 91 ~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n----~~~y~k~Gf~~~~~~ 147 (153)
+.+.|||. ++|.+..+++.+.+.. ...-++++||+.- .+.+.+.||+.....
T Consensus 364 d~VvvDPP--R~G~~~~~lk~l~~~~---p~~IvYVSCNP~TlaRDl~~L~~~gy~i~~v~ 419 (432)
T COG2265 364 DVVVVDPP--RAGADREVLKQLAKLK---PKRIVYVSCNPATLARDLAILASTGYEIERVQ 419 (432)
T ss_pred CEEEECCC--CCCCCHHHHHHHHhcC---CCcEEEEeCCHHHHHHHHHHHHhCCeEEEEEE
Confidence 46779998 4688888888887653 2345778887754 599999999755443
No 218
>PF06559 DCD: 2'-deoxycytidine 5'-triphosphate deaminase (DCD); InterPro: IPR010550 This family consists of several bacterial 2'-deoxycytidine 5'-triphosphate deaminase proteins (3.5.4.13 from EC).; GO: 0008829 dCTP deaminase activity; PDB: 2R9Q_C.
Probab=33.62 E-value=32 Score=24.76 Aligned_cols=39 Identities=13% Similarity=0.126 Sum_probs=12.7
Q ss_pred EEEEEeCCCCceEEEEEEEeeeeeecCCCceeEEeeEEeCcCcccCch
Q 031789 57 VCVIEDDRSGKIIATGSIFIEKKFLRNCGKVGHIEDVVVDASARGMQL 104 (153)
Q Consensus 57 ~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gi 104 (153)
.|+.++ |++||-..+......+.. +..-.+..+|||||+
T Consensus 318 PF~leh---GQ~vgrLvyE~m~~~P~~------lYG~~~gSnYq~QgL 356 (364)
T PF06559_consen 318 PFILEH---GQIVGRLVYERMAERPER------LYGAGIGSNYQGQGL 356 (364)
T ss_dssp -EEEET---T-EEEEEEEEEBSS----------TTSS-----------
T ss_pred CeeeeC---CcEEEEEEehhhccCccc------cccccccccchhhhh
Confidence 344544 899998888754322111 111236689999998
No 219
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=33.51 E-value=74 Score=18.91 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=17.4
Q ss_pred chHHHHHHHHHHHHHHcCCcEE
Q 031789 103 QLGKKIIKFLTDHAHAVGCYKV 124 (153)
Q Consensus 103 Gig~~ll~~~~~~~~~~g~~~~ 124 (153)
+|+..+++.+.+.|+++|..++
T Consensus 5 si~~~il~~v~~~a~~~~~~~V 26 (117)
T PRK00564 5 SVVSSLIALCEEHAKKNQAHKI 26 (117)
T ss_pred HHHHHHHHHHHHHHHHcCCCeE
Confidence 6788899999999888866544
No 220
>COG2994 HlyC ACP:hemolysin acyltransferase (hemolysin-activating protein) [Posttranslational modification, protein turnover, chaperones]
Probab=31.93 E-value=1.3e+02 Score=18.73 Aligned_cols=40 Identities=15% Similarity=0.152 Sum_probs=21.8
Q ss_pred CCCCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEe
Q 031789 33 CDSVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFI 76 (153)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~ 76 (153)
...+...++...+.-..+.+ . +.+..++ +|++||+++...
T Consensus 33 ~r~~pV~e~~~~iLPalk~~-Q--f~ly~de-~g~Piaf~~WA~ 72 (148)
T COG2994 33 HRHYPVAEISRNILPALKLG-Q--FALYFDE-HGRPIAFCTWAF 72 (148)
T ss_pred chhccHHHHHHHHhHHHhcC-c--eEEEEcC-CCCeeEEEEEee
Confidence 33455555555544433332 2 2233333 599999987664
No 221
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=31.91 E-value=1.4e+02 Score=21.21 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEecCCChhhhhh
Q 031789 105 GKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEK 138 (153)
Q Consensus 105 g~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k 138 (153)
.++-++.+++.+++.|+..+.+.|.+..-.+|.+
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S 50 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPS 50 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecc
Confidence 4566888889999999999999997766666655
No 222
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=31.82 E-value=72 Score=23.06 Aligned_cols=41 Identities=17% Similarity=0.159 Sum_probs=30.6
Q ss_pred chHHHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCceee
Q 031789 103 QLGKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQK 144 (153)
Q Consensus 103 Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~~ 144 (153)
|+| -|=..++++|+..|++.+.++.+++-..+-+++|-...
T Consensus 174 G~G-GlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~ 214 (339)
T COG1064 174 GAG-GLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHV 214 (339)
T ss_pred CCc-HHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEE
Confidence 677 77788899999999666666666655688888886543
No 223
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=31.58 E-value=93 Score=16.92 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHcCCcEEEE
Q 031789 105 GKKIIKFLTDHAHAVGCYKVIL 126 (153)
Q Consensus 105 g~~ll~~~~~~~~~~g~~~~~~ 126 (153)
-.+.++.+.+.|++.|...+.-
T Consensus 27 ~d~Al~eM~e~A~~lGAnAVVG 48 (74)
T TIGR03884 27 VDEIVENLREKVKAKGGMGLIA 48 (74)
T ss_pred HHHHHHHHHHHHHHcCCCEEEE
Confidence 3588999999999999887654
No 224
>PRK07758 hypothetical protein; Provisional
Probab=31.32 E-value=67 Score=18.44 Aligned_cols=21 Identities=14% Similarity=0.131 Sum_probs=17.7
Q ss_pred CchHHHHHHHHHHHHHHcCCc
Q 031789 102 MQLGKKIIKFLTDHAHAVGCY 122 (153)
Q Consensus 102 ~Gig~~ll~~~~~~~~~~g~~ 122 (153)
+|+|.+-++.+.+...+.|..
T Consensus 73 knlGkKSL~EIkekL~E~GLs 93 (95)
T PRK07758 73 HGMGPASLPKLRKALEESGLS 93 (95)
T ss_pred cCCCHHHHHHHHHHHHHcCCC
Confidence 689999999999988887753
No 225
>PF12294 DUF3626: Protein of unknown function (DUF3626); InterPro: IPR022074 This family of proteins is found in bacteria. Proteins in this family are typically between 294 and 374 amino acids in length.
Probab=30.97 E-value=21 Score=24.98 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=16.4
Q ss_pred EeeEEeCcCcccCchHHHHHHH
Q 031789 90 IEDVVVDASARGMQLGKKIIKF 111 (153)
Q Consensus 90 i~~~~v~p~~rg~Gig~~ll~~ 111 (153)
+..+.+||+|||.-++..+-..
T Consensus 191 VeaLVlDPsyrgT~ve~~~~~l 212 (297)
T PF12294_consen 191 VEALVLDPSYRGTEVEAAARAL 212 (297)
T ss_pred hHHHhcCccccCChHHHHHHHH
Confidence 4467899999998887765443
No 226
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=30.52 E-value=1e+02 Score=20.75 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=20.8
Q ss_pred HHHcCCcEEEEEe---cCCC---hhhhhhcCceeeCc
Q 031789 116 AHAVGCYKVILDC---SLGN---KAFYEKCGLKQKGI 146 (153)
Q Consensus 116 ~~~~g~~~~~~~~---~~~n---~~~y~k~Gf~~~~~ 146 (153)
.+..|+.++.+-+ .+-| ..|++.+||+.+..
T Consensus 113 L~al~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~ 149 (238)
T COG3473 113 LNALGAQRISVLTPYIDEVNQREIEFLEANGFEIVDF 149 (238)
T ss_pred HHhhCcceEEEeccchhhhhhHHHHHHHhCCeEEEEe
Confidence 3445677766644 3444 49999999998753
No 227
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=30.27 E-value=80 Score=21.71 Aligned_cols=30 Identities=23% Similarity=0.301 Sum_probs=25.5
Q ss_pred cccCchHHHHHHHHHHHHHHcCCcEEEEEe
Q 031789 99 ARGMQLGKKIIKFLTDHAHAVGCYKVILDC 128 (153)
Q Consensus 99 ~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~ 128 (153)
..|.--|..-+..+++++.+.|++.+.+.+
T Consensus 45 ~~Gh~~G~~~l~~~l~~c~~~GI~~vTvYa 74 (251)
T PRK14830 45 IAGHKAGMDTVKKITKAASELGVKVLTLYA 74 (251)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 346667788999999999999999988877
No 228
>cd04263 DUF619-NAGK-FABP DUF619 domain of N-acetylglutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway. DUF619-NAGK-FABP: DUF619 domain of N-acetylglutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (FABP). The nuclear-encoded, mitochondrial polyprotein precursor (ARG5,6) consists of an N-terminal NAGK (ArgB) domain, a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved into two distinct enzymes (NAGK-DUF619 and NAGPR) in the mitochondria. Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. Arg5,6 catalyzes the second reaction of arginine biosynthesis; the phosphorylation of the gamma-carboxyl group of NAG to produce N-acetylglutamylphosphate (NAGP) which is subsequently converted to ornithine in two more steps. It also binds and regulates the promoters of nuclear and mitochondrial genes, and may possibly regu
Probab=30.22 E-value=1.2e+02 Score=17.58 Aligned_cols=43 Identities=12% Similarity=0.193 Sum_probs=34.0
Q ss_pred CceeEEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCC
Q 031789 85 GKVGHIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGN 132 (153)
Q Consensus 85 ~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n 132 (153)
+..+++..+.|..+-++.|++..+.+.+.+. ...+...+.++|
T Consensus 31 ~~vp~LdkF~vs~~~~l~~vaD~Vf~~i~~d-----~p~L~W~~r~~n 73 (98)
T cd04263 31 GEVATLATFTITKSGWLNNVADNIFTAIKKD-----HPKLVWTVREDD 73 (98)
T ss_pred CCCEEEEEEEEccccccccHHHHHHHHHHhh-----CCeeEEEeCCCC
Confidence 6689999999999999999999999888754 346666665444
No 229
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=29.77 E-value=2.3e+02 Score=20.88 Aligned_cols=55 Identities=15% Similarity=0.118 Sum_probs=41.3
Q ss_pred eEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEE-EecCCChhhhhhcCceeeCc
Q 031789 92 DVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVIL-DCSLGNKAFYEKCGLKQKGI 146 (153)
Q Consensus 92 ~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~-~~~~~n~~~y~k~Gf~~~~~ 146 (153)
.+.++|......+...|++.+.+.+++.|+..+-+ .+++.-....+..||....-
T Consensus 105 R~l~~~~~~~~~~~~~L~~~~~~~a~~~~~Ss~h~lF~~~~~~~~l~~~G~~~r~~ 160 (370)
T PF04339_consen 105 RLLIAPGADRAALRAALLQALEQLAEENGLSSWHILFPDEEDAAALEEAGFLSRQG 160 (370)
T ss_pred ceeECCCCCHHHHHHHHHHHHHHHHHHcCCCcceeecCCHHHHHHHHhCCCceecC
Confidence 46688888888999999999999999998875543 33443357778888876543
No 230
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=29.15 E-value=1.7e+02 Score=19.16 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=30.3
Q ss_pred eCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCC
Q 031789 95 VDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGN 132 (153)
Q Consensus 95 v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n 132 (153)
|.-.+|..|.-..|++.+.+-+++.|++.-...+...+
T Consensus 6 I~gs~r~~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~ 43 (207)
T COG0655 6 INGSPRSNGNTAKLAEAVLEGAEEAGAEVEIIRLPEKN 43 (207)
T ss_pred EEecCCCCCcHHHHHHHHHHHHHHcCCEEEEEEecCCC
Confidence 33445558999999999999999999988777777655
No 231
>PF08348 PAS_6: YheO-like PAS domain; InterPro: IPR013559 This domain is found in various hypothetical bacterial proteins that are similar to the Escherichia coli protein YheO (P64624 from SWISSPROT). Their function is unknown, but a few members are annotated as being HTH-containing proteins and putative DNA-binding proteins.
Probab=29.03 E-value=1.3e+02 Score=17.89 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=12.9
Q ss_pred EEEEEeCCCCceEEEEEEEe
Q 031789 57 VCVIEDDRSGKIIATGSIFI 76 (153)
Q Consensus 57 ~~~~~~~~~~~~vG~~~~~~ 76 (153)
.+++.++ +|+++|..++..
T Consensus 86 T~~Ird~-~g~~iG~LCIN~ 104 (118)
T PF08348_consen 86 TFFIRDE-NGKLIGALCINF 104 (118)
T ss_pred EEEEECC-CCCEEEEEEEEe
Confidence 4445554 578999888875
No 232
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=28.83 E-value=59 Score=21.26 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEecCCC
Q 031789 105 GKKIIKFLTDHAHAVGCYKVILDCSLGN 132 (153)
Q Consensus 105 g~~ll~~~~~~~~~~g~~~~~~~~~~~n 132 (153)
|+.++.+.++.+.+.|+..+.+.+....
T Consensus 29 g~~li~~~l~~l~~~gi~~i~iv~~~~~ 56 (221)
T cd06422 29 GKPLIDHALDRLAAAGIRRIVVNTHHLA 56 (221)
T ss_pred CEEHHHHHHHHHHHCCCCEEEEEccCCH
Confidence 5689999999998889998888776544
No 233
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=28.47 E-value=1.3e+02 Score=19.57 Aligned_cols=45 Identities=11% Similarity=0.323 Sum_probs=32.3
Q ss_pred CchHHHHHHHHHHHHHHcCCcEEEEEecCC-----ChhhhhhcCceeeCc
Q 031789 102 MQLGKKIIKFLTDHAHAVGCYKVILDCSLG-----NKAFYEKCGLKQKGI 146 (153)
Q Consensus 102 ~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~-----n~~~y~k~Gf~~~~~ 146 (153)
.-.--++++.+++..++.|...+.+...+. ....++..||.....
T Consensus 18 ~~T~P~vv~avv~~l~~~g~~~i~i~e~~~~~~~~~~~~~~~~G~~~~~~ 67 (206)
T PF04015_consen 18 ATTHPEVVRAVVEMLKEAGAKEIIIAESPGSGAADTREVFKRSGYEEIAE 67 (206)
T ss_pred ccCCHHHHHHHHHHHHHcCCCceEEEeCCCcchHhHHHHHHHcchhhHHH
Confidence 334447899999999999988666655322 258899999987643
No 234
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=27.43 E-value=90 Score=20.11 Aligned_cols=28 Identities=21% Similarity=0.404 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEecCCC
Q 031789 105 GKKIIKFLTDHAHAVGCYKVILDCSLGN 132 (153)
Q Consensus 105 g~~ll~~~~~~~~~~g~~~~~~~~~~~n 132 (153)
|+.|+.+.++.+...|+..+.+.++...
T Consensus 28 g~pli~~~l~~l~~~g~~~i~vv~~~~~ 55 (217)
T cd04181 28 GKPILEYIIERLARAGIDEIILVVGYLG 55 (217)
T ss_pred CeeHHHHHHHHHHHCCCCEEEEEeccCH
Confidence 4689999999888888988888876544
No 235
>PF07637 PSD5: Protein of unknown function (DUF1595); InterPro: IPR013043 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013042 from INTERPRO.
Probab=27.17 E-value=36 Score=17.68 Aligned_cols=40 Identities=10% Similarity=0.129 Sum_probs=23.3
Q ss_pred EeCcCCCcchHHHHHHhhhcCCCCCChHHHHHHHHhhccCC
Q 031789 12 RKLEITDKSKGFIELLQQLSVCDSVSDKQFEERFLELNSYG 52 (153)
Q Consensus 12 r~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (153)
||++.+++. .++.++...........+.+..-+..+..++
T Consensus 17 Rp~~~~e~~-~~~~~~~~~~~~g~~~~~a~~~~l~aiL~SP 56 (64)
T PF07637_consen 17 RPLTDEEVD-RYLALYDSARAQGEDFEEALKEALQAILCSP 56 (64)
T ss_pred CCCCHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCc
Confidence 456667777 4777777666543333445555555555444
No 236
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=26.97 E-value=1.7e+02 Score=18.33 Aligned_cols=42 Identities=10% Similarity=0.132 Sum_probs=30.9
Q ss_pred chHHHHHHHHHHHHHHcCCcEEEEEe----cCCChhhhhhcCceee
Q 031789 103 QLGKKIIKFLTDHAHAVGCYKVILDC----SLGNKAFYEKCGLKQK 144 (153)
Q Consensus 103 Gig~~ll~~~~~~~~~~g~~~~~~~~----~~~n~~~y~k~Gf~~~ 144 (153)
|-...++..+.+.+++.|...+.+.+ .+.....++++|+-.+
T Consensus 74 g~h~~l~~~lve~lre~G~~~i~v~~GGvip~~d~~~l~~~G~~~i 119 (143)
T COG2185 74 GGHLTLVPGLVEALREAGVEDILVVVGGVIPPGDYQELKEMGVDRI 119 (143)
T ss_pred chHHHHHHHHHHHHHHhCCcceEEeecCccCchhHHHHHHhCccee
Confidence 44568899999999999999887544 2344577888887643
No 237
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=26.39 E-value=4.1e+02 Score=22.72 Aligned_cols=62 Identities=13% Similarity=0.052 Sum_probs=44.8
Q ss_pred CceeEEeeEEeCcCcccCc--hHHHHHHHHHHHHHHcCCcEEEEEecCCChhhhh---hcCceeeCc
Q 031789 85 GKVGHIEDVVVDASARGMQ--LGKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYE---KCGLKQKGI 146 (153)
Q Consensus 85 ~~~~~i~~~~v~p~~rg~G--ig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~---k~Gf~~~~~ 146 (153)
+.-..+.++.-++.+-..| +....+..-++.+++.|+..+.+.-.+....||+ ++|+-....
T Consensus 331 Gkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE 397 (1021)
T PRK10340 331 NRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAE 397 (1021)
T ss_pred CEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEEC
Confidence 4456666666666655455 4567888889999999999999876666666665 788876553
No 238
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=26.19 E-value=1.3e+02 Score=17.02 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=14.9
Q ss_pred HHHhhccCCCceEEEEEEeCCCCceEEEEEE
Q 031789 44 RFLELNSYGDDHIVCVIEDDRSGKIIATGSI 74 (153)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~ 74 (153)
.+..+...+ ...+.++.+ +|+++|++..
T Consensus 87 ~~~~m~~~~-~~~l~Vvd~--~~~~~Givt~ 114 (120)
T cd04641 87 IFDLIVKAR-VHRLVVVDE--NKRVEGIISL 114 (120)
T ss_pred HHHHHHhcC-ccEEEEECC--CCCEEEEEEH
Confidence 344443333 334444444 3889998764
No 239
>PRK10122 GalU regulator GalF; Provisional
Probab=26.12 E-value=69 Score=22.46 Aligned_cols=28 Identities=21% Similarity=0.413 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEecCCC
Q 031789 105 GKKIIKFLTDHAHAVGCYKVILDCSLGN 132 (153)
Q Consensus 105 g~~ll~~~~~~~~~~g~~~~~~~~~~~n 132 (153)
|+.+++++++.+...|++.+.+.++...
T Consensus 33 gkpiI~~~l~~l~~~Gi~~i~iv~~~~~ 60 (297)
T PRK10122 33 DKPMIQYIVDEIVAAGIKEIVLVTHASK 60 (297)
T ss_pred CEEHHHHHHHHHHHCCCCEEEEEcCCCh
Confidence 4799999999999999999998886544
No 240
>PRK10150 beta-D-glucuronidase; Provisional
Probab=26.05 E-value=3.3e+02 Score=21.44 Aligned_cols=61 Identities=13% Similarity=0.060 Sum_probs=42.4
Q ss_pred CceeEEeeEEeCcCc--ccCchHHHHHHHHHHHHHHcCCcEEEEEecCCCh---hhhhhcCceeeC
Q 031789 85 GKVGHIEDVVVDASA--RGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGNK---AFYEKCGLKQKG 145 (153)
Q Consensus 85 ~~~~~i~~~~v~p~~--rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~---~~y~k~Gf~~~~ 145 (153)
+.-.++.++..+++. +|.++..+.+..-++.+++.|+..+.+.-.+... .+.-++|+-...
T Consensus 289 G~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~ 354 (604)
T PRK10150 289 GKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVID 354 (604)
T ss_pred CEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEE
Confidence 455667677666664 4555667777777888999999999986556554 445678886553
No 241
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=25.77 E-value=1.3e+02 Score=21.81 Aligned_cols=39 Identities=21% Similarity=0.254 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCcee
Q 031789 105 GKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQ 143 (153)
Q Consensus 105 g~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~ 143 (153)
+..+-..+++.|+..++..+...+...+..+-+++|-..
T Consensus 167 sggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k~lGAd~ 205 (347)
T KOG1198|consen 167 SGGVGTAAIQLAKHAGAIKVVTACSKEKLELVKKLGADE 205 (347)
T ss_pred CcHHHHHHHHHHHhcCCcEEEEEcccchHHHHHHcCCcE
Confidence 445556666777777766777777888899999999543
No 242
>PF02334 RTP: Replication terminator protein; InterPro: IPR003432 The bacterial replication terminator protein (RTP) plays a role in the termination of DNA replication by impeding replication fork movement. Two RTP dimers bind to the two inverted repeat regions at the termination site.; GO: 0003677 DNA binding, 0006274 DNA replication termination; PDB: 2DPU_A 2DPD_A 1F4K_A 1J0R_B 2EFW_F 2DQR_B 1BM9_B.
Probab=25.73 E-value=24 Score=20.82 Aligned_cols=22 Identities=14% Similarity=0.273 Sum_probs=14.9
Q ss_pred cccCchHHHHHHHHHHHHHHcC
Q 031789 99 ARGMQLGKKIIKFLTDHAHAVG 120 (153)
Q Consensus 99 ~rg~Gig~~ll~~~~~~~~~~g 120 (153)
-|++|+|.++++.+-+..+..|
T Consensus 28 e~~r~Yg~q~Ld~lr~EFk~~G 49 (122)
T PF02334_consen 28 EQERGYGLQLLDELRSEFKPLG 49 (122)
T ss_dssp HTT-EBCTCHHHHHHHHHTTTT
T ss_pred hcccchHHHHHHHHHHHhhhcC
Confidence 3567888888887777766555
No 243
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=25.65 E-value=69 Score=19.60 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=17.2
Q ss_pred chHHHHHHHHHHHHHHcCCcEE
Q 031789 103 QLGKKIIKFLTDHAHAVGCYKV 124 (153)
Q Consensus 103 Gig~~ll~~~~~~~~~~g~~~~ 124 (153)
+|+..+++.+.+.|+++|..++
T Consensus 5 si~~~i~~~v~~~A~~~g~~~V 26 (135)
T PRK03824 5 ALAEAIVRTVIDYAQKEGASKV 26 (135)
T ss_pred HHHHHHHHHHHHHHHHcCCchh
Confidence 5778888888888888876654
No 244
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=25.53 E-value=2.4e+02 Score=20.43 Aligned_cols=35 Identities=17% Similarity=0.164 Sum_probs=24.4
Q ss_pred EEeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecC
Q 031789 89 HIEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSL 130 (153)
Q Consensus 89 ~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~ 130 (153)
..-.+||.++ + .+...++..|...|++.+.++++.
T Consensus 123 rwfQLYvykd---r----~It~~Lv~raEk~GfkAlvlTvDt 157 (363)
T KOG0538|consen 123 RWFQLYVYKD---R----DITEQLVKRAEKAGFKALVLTVDT 157 (363)
T ss_pred EEEEEEecCc---h----HHHHHHHHHHHHcCceEEEEEecc
Confidence 3447899888 3 445555555667799999998853
No 245
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=25.18 E-value=84 Score=21.21 Aligned_cols=29 Identities=17% Similarity=0.442 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEecCCCh
Q 031789 105 GKKIIKFLTDHAHAVGCYKVILDCSLGNK 133 (153)
Q Consensus 105 g~~ll~~~~~~~~~~g~~~~~~~~~~~n~ 133 (153)
|+.|+++.++.+...|+..+.+.++....
T Consensus 30 g~pli~~~l~~l~~~gi~~v~iv~~~~~~ 58 (260)
T TIGR01099 30 DKPLIQYVVEEAVEAGIEDILIVTGRGKR 58 (260)
T ss_pred CEEHHHHHHHHHHhCCCCEEEEEeCCcHH
Confidence 46899999999988899999888866543
No 246
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=25.12 E-value=75 Score=20.47 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=23.9
Q ss_pred HH-HHHHHHHHHHHHcCCcEEEEEecCCCh
Q 031789 105 GK-KIIKFLTDHAHAVGCYKVILDCSLGNK 133 (153)
Q Consensus 105 g~-~ll~~~~~~~~~~g~~~~~~~~~~~n~ 133 (153)
|+ .++++.++.+...|++.+.+.++....
T Consensus 28 g~~pli~~~l~~l~~~gi~~iivv~~~~~~ 57 (200)
T cd02508 28 GRYRLIDFPLSNMVNSGIRNVGVLTQYKSR 57 (200)
T ss_pred CeeeeHHHHHHHHHHCCCCEEEEEeCCChH
Confidence 34 689999999998999999998876653
No 247
>PF11633 SUD-M: Single-stranded poly(A) binding domain; InterPro: IPR024375 This domain identifies non-structural protein 3 (Nsp3). It is found in human SARS coronavirus polyprotein 1a and 1ab, and in related coronavirus polyproteins [].; PDB: 2KQV_A 2W2G_A 2WCT_D 2JZE_A 2JZF_A 2RNK_A 2JZD_A.
Probab=24.97 E-value=45 Score=20.48 Aligned_cols=36 Identities=14% Similarity=0.083 Sum_probs=20.3
Q ss_pred HHHHHHHHHHcCCcEEEEEecCCChhhhhhcCceee
Q 031789 109 IKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQK 144 (153)
Q Consensus 109 l~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~~ 144 (153)
++.++++|++.|.....+.-.+.+.++.++-|+.+.
T Consensus 25 ~r~ml~~ak~~g~~~pvc~D~~A~~k~lkr~gv~~~ 60 (142)
T PF11633_consen 25 FRAMLQHAKETGLLCPVCIDYPAFCKTLKRKGVDPK 60 (142)
T ss_dssp CHHHHHHHHHHT-EEEEETT-HHHHHHHHHTTS---
T ss_pred HHHHHHHHHhcCcEEEEEeccHHHHHHHhccCcccc
Confidence 456777888877554444335555688888776654
No 248
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=24.74 E-value=82 Score=20.67 Aligned_cols=44 Identities=20% Similarity=0.232 Sum_probs=28.5
Q ss_pred chHH-HHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCceeeCc
Q 031789 103 QLGK-KIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQKGI 146 (153)
Q Consensus 103 Gig~-~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~~~~ 146 (153)
|-|+ .+..++.+..++.|.....|+-+.--..+.+.+||....+
T Consensus 33 GsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR 77 (197)
T COG0529 33 GSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDR 77 (197)
T ss_pred CCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHH
Confidence 5555 4455556666777888777643322258899999987654
No 249
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=24.68 E-value=85 Score=21.30 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEecCCC
Q 031789 105 GKKIIKFLTDHAHAVGCYKVILDCSLGN 132 (153)
Q Consensus 105 g~~ll~~~~~~~~~~g~~~~~~~~~~~n 132 (153)
|+.++.+.++.+...|+..+.+.++...
T Consensus 30 gkpli~~~l~~l~~~gi~~i~iv~~~~~ 57 (267)
T cd02541 30 DKPVIQYIVEEAVAAGIEDIIIVTGRGK 57 (267)
T ss_pred CEEHHHHHHHHHHHCCCCEEEEEeCCch
Confidence 4699999999999899999988886544
No 250
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=24.59 E-value=1.4e+02 Score=16.74 Aligned_cols=32 Identities=6% Similarity=0.156 Sum_probs=16.6
Q ss_pred HHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEE
Q 031789 41 FEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIF 75 (153)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~ 75 (153)
+...++.+...+ ...+.+..+ +|+++|++...
T Consensus 78 l~~a~~~m~~~~-~~~lpVvd~--~~~~~Gvi~~~ 109 (114)
T cd04619 78 LHDVWQVMKQRG-LKNIPVVDE--NARPLGVLNAR 109 (114)
T ss_pred HHHHHHHHHHcC-CCeEEEECC--CCcEEEEEEhH
Confidence 344444444433 333444443 38999987643
No 251
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=24.51 E-value=1.6e+02 Score=19.84 Aligned_cols=59 Identities=22% Similarity=0.268 Sum_probs=39.9
Q ss_pred eeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCChhh-hhhcCceeeCceeeeec
Q 031789 91 EDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGNKAF-YEKCGLKQKGIHMTMYF 152 (153)
Q Consensus 91 ~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~-y~k~Gf~~~~~~~~~~~ 152 (153)
.-+++|--.|.+=.| -++.++...+..|. .++.++..-...+ -.++||..+|+.+.-|.
T Consensus 100 ~IIA~DaT~R~RP~~--~~~~~i~~~k~~~~-l~MAD~St~ee~l~a~~~G~D~IGTTLsGYT 159 (229)
T COG3010 100 DIIAFDATDRPRPDG--DLEELIARIKYPGQ-LAMADCSTFEEGLNAHKLGFDIIGTTLSGYT 159 (229)
T ss_pred cEEEeecccCCCCcc--hHHHHHHHhhcCCc-EEEeccCCHHHHHHHHHcCCcEEeccccccc
Confidence 357889999998887 66666666554453 3444554444444 47899999999887663
No 252
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=24.34 E-value=1.3e+02 Score=19.83 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEecCCC
Q 031789 105 GKKIIKFLTDHAHAVGCYKVILDCSLGN 132 (153)
Q Consensus 105 g~~ll~~~~~~~~~~g~~~~~~~~~~~n 132 (153)
|+.++.++++.+...|+..+.+.++...
T Consensus 30 g~~li~~~l~~l~~~~~~~i~vv~~~~~ 57 (236)
T cd04189 30 GKPIIQYAIEDLREAGIEDIGIVVGPTG 57 (236)
T ss_pred CcchHHHHHHHHHHCCCCEEEEEcCCCH
Confidence 5789999999888889988888776544
No 253
>PF01910 DUF77: Domain of unknown function DUF77; InterPro: IPR002767 This entry contains several hypothetical proteins of unknown function found in archaebacteria, eukaryotes and eubacteria. The structures of YBL001c from Saccharomyces cerevisiae and its homologue MTH1187 from the archaea Methanobacterium thermoautotrophicum have been determined []. These proteins have a ferredoxin-like alpha/beta sandwich structure with anti-parallel beta-sheets. Generally, they have two domains that form a single beta-sheet dimer, where two dimers pack sheet-to-sheet into a tetramer, some proteins having an extra C-terminal helix. ; PDB: 1LXJ_A 1YQH_A 2EKY_G 2EPI_A 1VK8_D 2IBO_C 1LXN_B.
Probab=23.62 E-value=1.5e+02 Score=16.73 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHcCCcEEEEEe
Q 031789 107 KIIKFLTDHAHAVGCYKVILDC 128 (153)
Q Consensus 107 ~ll~~~~~~~~~~g~~~~~~~~ 128 (153)
.+++.+.+.+.+.|+.++...+
T Consensus 51 ~~i~~~~e~~~~~G~~Rv~t~i 72 (92)
T PF01910_consen 51 ALIKEAHEALFEAGAKRVVTVI 72 (92)
T ss_dssp HHHHHHHHHHHCTTSSEEEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEE
Confidence 5677788888888999888766
No 254
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.50 E-value=74 Score=21.92 Aligned_cols=36 Identities=17% Similarity=0.177 Sum_probs=28.3
Q ss_pred cCcccCchHHHHHHHHHHHHHHcCCcEEEEEe-cCCC
Q 031789 97 ASARGMQLGKKIIKFLTDHAHAVGCYKVILDC-SLGN 132 (153)
Q Consensus 97 p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~-~~~n 132 (153)
|...|.--|..-+..+++++.+.|++.+.+.+ ...|
T Consensus 35 ~~~~GH~~G~~~~~~iv~~c~~~gI~~lTvYaFS~eN 71 (253)
T PRK14836 35 PRVEGHRAGVRAVRRTIEFCLEKGIEMLTLFAFSSEN 71 (253)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCEEehhHhhhhh
Confidence 34456777888999999999999999998877 3444
No 255
>KOG4518 consensus Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]
Probab=23.42 E-value=1.6e+02 Score=19.71 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=22.1
Q ss_pred chHHHHHHHHHHHHHHcCCcEEEEEe
Q 031789 103 QLGKKIIKFLTDHAHAVGCYKVILDC 128 (153)
Q Consensus 103 Gig~~ll~~~~~~~~~~g~~~~~~~~ 128 (153)
..-++-++..+++|++.||.++-+.+
T Consensus 82 k~FR~~Ld~ai~yAkalgC~rIHlmA 107 (264)
T KOG4518|consen 82 KEFRKSLDTAIEYAKALGCCRIHLMA 107 (264)
T ss_pred HHHHHHHHHHHHHHHHhCCceEEEec
Confidence 45567789999999999999998876
No 256
>PF04260 DUF436: Protein of unknown function (DUF436) ; InterPro: IPR006340 Members of this family are uncharacterised proteins of about 180 amino acids from the Bacillus/Clostridium group of Gram-positive bacteria, found in no more than one copy per genome. ; PDB: 1V8D_C.
Probab=23.35 E-value=2.2e+02 Score=18.40 Aligned_cols=44 Identities=23% Similarity=0.357 Sum_probs=30.0
Q ss_pred chHHHHHHHHHHHHHHcCCcEEEEEecCCC------hhhhhhcCceeeCc
Q 031789 103 QLGKKIIKFLTDHAHAVGCYKVILDCSLGN------KAFYEKCGLKQKGI 146 (153)
Q Consensus 103 Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n------~~~y~k~Gf~~~~~ 146 (153)
-+|..+++.+.+..++.|+....=.|..-| ...-++.||+++..
T Consensus 43 eva~ai~~~l~~~~~~~gi~LA~QcCEHlNRALvvEr~~a~~~~le~V~V 92 (172)
T PF04260_consen 43 EVAEAIFEALLEVLKERGIYLAFQCCEHLNRALVVEREVAEKYGLEEVTV 92 (172)
T ss_dssp HHHHHHHHHHHHHHHTTT-EEEEE--GGGTT-EEEEHHHHHHHT--EEE-
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEEchhhhhHHHHhhHHHHhHcCCceEEE
Confidence 578999999999999889886666665555 37778889987754
No 257
>PF01697 Glyco_transf_92: Glycosyltransferase family 92; InterPro: IPR008166 This entry represents a region approximately 300 residues long that is of unknown function. The aligned region contains several conserved cysteine residues and several charged residues that may be catalytic residues.
Probab=23.35 E-value=2.5e+02 Score=19.14 Aligned_cols=55 Identities=13% Similarity=0.042 Sum_probs=35.0
Q ss_pred eEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCC------hhhhhhcCceeeCce
Q 031789 92 DVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGN------KAFYEKCGLKQKGIH 147 (153)
Q Consensus 92 ~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n------~~~y~k~Gf~~~~~~ 147 (153)
.++|.|-|-.-.-...+++.++- .+..|+..+.+...... .+.|++.|+......
T Consensus 4 ~vCv~pl~~~~~~~~~l~e~ie~-~~~~G~~~~~~Y~~~~~~~~~~vL~~Y~~~g~v~~~~w 64 (285)
T PF01697_consen 4 VVCVSPLFGNEDDWLQLIEWIEY-HRLLGVDHFYFYDNSSSPSVRKVLKEYERSGYVEVIPW 64 (285)
T ss_pred EEEccchhcccccHHHHHHHHHH-HHHhCCCEEEEEEccCCHHHHHhHHHHhhcCeEEEEEc
Confidence 35566666554444455555554 45569999888775432 388999998766433
No 258
>PRK04017 hypothetical protein; Provisional
Probab=23.34 E-value=78 Score=19.41 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=16.9
Q ss_pred eEEeCcCcccCchHHHHHHHHHH
Q 031789 92 DVVVDASARGMQLGKKIIKFLTD 114 (153)
Q Consensus 92 ~~~v~p~~rg~Gig~~ll~~~~~ 114 (153)
-+.+||++.|.-+.+++.+.+..
T Consensus 69 IILTD~D~~GekIr~~l~~~l~~ 91 (132)
T PRK04017 69 IILTDFDRKGEELAKKLSEYLQG 91 (132)
T ss_pred EEEECCCcchHHHHHHHHHHHHh
Confidence 46799999997777766665543
No 259
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.04 E-value=1.9e+02 Score=20.65 Aligned_cols=36 Identities=25% Similarity=0.237 Sum_probs=22.6
Q ss_pred cCchHHHHHHHHHHHHHHcCCcEEEEEecCCC----hhhhhhcC
Q 031789 101 GMQLGKKIIKFLTDHAHAVGCYKVILDCSLGN----KAFYEKCG 140 (153)
Q Consensus 101 g~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n----~~~y~k~G 140 (153)
|.|+|+++...+. +.|...+.++++... .+-.++.|
T Consensus 47 g~GlGr~ialefa----~rg~~~vl~Din~~~~~etv~~~~~~g 86 (300)
T KOG1201|consen 47 GSGLGRLIALEFA----KRGAKLVLWDINKQGNEETVKEIRKIG 86 (300)
T ss_pred CchHHHHHHHHHH----HhCCeEEEEeccccchHHHHHHHHhcC
Confidence 4799998866544 346666666776554 35555555
No 260
>cd00145 POLBc DNA polymerase type-B family catalytic domain. DNA-directed DNA polymerases elongate DNA by adding nucleotide triphosphate (dNTP) residues to the 5'-end of the growing chain of DNA. DNA-directed DNA polymerases are multifunctional with both synthetic (polymerase) and degradative modes (exonucleases) and play roles in the processes of DNA replication, repair, and recombination. DNA-dependent DNA polymerases can be classified in six main groups based upon their phylogenetic relationships with E. coli polymerase I (class A), E. coli polymerase II (class B), E. coli polymerase III (class C), euryarchaeota polymerase II (class D), human polymerase beta (class x), E. coli UmuC/DinB, and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family B DNA polymerases include E. coli DNA polymerase II, some eubacterial phage DNA polymerases, nuclear replicative DNA polymerases (alpha, delta, epsilon, and zeta), and eukaryotic viral and plasmid-borne enzymes. DNA polymerase is
Probab=22.67 E-value=1.4e+02 Score=21.26 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=23.2
Q ss_pred CchHHHHHHHHHHHHHHcCCcEEEEEec
Q 031789 102 MQLGKKIIKFLTDHAHAVGCYKVILDCS 129 (153)
Q Consensus 102 ~Gig~~ll~~~~~~~~~~g~~~~~~~~~ 129 (153)
.-.|+.++..+.+.+.+.|+..++.+++
T Consensus 135 T~~GR~~l~~~~~~ie~~g~~VIYGDTD 162 (323)
T cd00145 135 TSFGREIIQDTIALVEEHGARVIYGDTD 162 (323)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEECCC
Confidence 3678999999999999889888877664
No 261
>PHA02324 hypothetical protein
Probab=22.66 E-value=45 Score=15.82 Aligned_cols=9 Identities=22% Similarity=0.287 Sum_probs=6.0
Q ss_pred eCcCcccCc
Q 031789 95 VDASARGMQ 103 (153)
Q Consensus 95 v~p~~rg~G 103 (153)
-...|||||
T Consensus 38 akK~YRGQG 46 (47)
T PHA02324 38 AKKPYRGQG 46 (47)
T ss_pred ccCcccCCC
Confidence 346788876
No 262
>PF08921 DUF1904: Domain of unknown function (DUF1904); InterPro: IPR015017 This entry represents a family of hypothetical bacterial proteins. ; PDB: 1U9D_B.
Probab=22.43 E-value=1.5e+02 Score=17.40 Aligned_cols=41 Identities=24% Similarity=0.328 Sum_probs=18.1
Q ss_pred ccCchHHHHHHHHHHHHHH-cCCcEEEEEecCCChhhhhhcC
Q 031789 100 RGMQLGKKIIKFLTDHAHA-VGCYKVILDCSLGNKAFYEKCG 140 (153)
Q Consensus 100 rg~Gig~~ll~~~~~~~~~-~g~~~~~~~~~~~n~~~y~k~G 140 (153)
||+-+=.++.+.+.+..+. .|...+.+....-+...|=++|
T Consensus 65 R~qe~qd~vA~~It~~v~~~~g~~~V~V~F~~l~~~~YY~nG 106 (108)
T PF08921_consen 65 RGQEVQDKVAQAITEHVKKANGYQDVAVIFTDLNPSNYYENG 106 (108)
T ss_dssp --HHHHHHHHHHHHHHHHHH-TT---EEEEEE--GGG-EETT
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEcCccccccCC
Confidence 4455545566666666666 6777666655544444444444
No 263
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=22.42 E-value=1e+02 Score=17.93 Aligned_cols=33 Identities=18% Similarity=0.148 Sum_probs=19.3
Q ss_pred HHHHHHHcCCcEEEEEecCCChhhhhhcCceee
Q 031789 112 LTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQK 144 (153)
Q Consensus 112 ~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~~ 144 (153)
+++.|+..|.+.+....++....+.+++|...+
T Consensus 6 a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~~~ 38 (130)
T PF00107_consen 6 AIQLAKAMGAKVIATDRSEEKLELAKELGADHV 38 (130)
T ss_dssp HHHHHHHTTSEEEEEESSHHHHHHHHHTTESEE
T ss_pred HHHHHHHcCCEEEEEECCHHHHHHHHhhccccc
Confidence 445566678444444444445688888885543
No 264
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=22.34 E-value=2.8e+02 Score=19.31 Aligned_cols=61 Identities=10% Similarity=0.080 Sum_probs=34.6
Q ss_pred CceeEEeeEEeCcCcccC--chHHHHHHHHHHHHHHcCCcEEEEEecCCCh---hhhhhcCceeeC
Q 031789 85 GKVGHIEDVVVDASARGM--QLGKKIIKFLTDHAHAVGCYKVILDCSLGNK---AFYEKCGLKQKG 145 (153)
Q Consensus 85 ~~~~~i~~~~v~p~~rg~--Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~---~~y~k~Gf~~~~ 145 (153)
+.-..|.++.-++.+-.. .+-.+.+..=+..+++.|+..+.+.-.+... .+.-++|+-...
T Consensus 12 Gk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~ 77 (298)
T PF02836_consen 12 GKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQ 77 (298)
T ss_dssp TEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEE
T ss_pred CEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEE
Confidence 334555666666655444 4456777777888999999999986666664 455678886543
No 265
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=22.15 E-value=1.9e+02 Score=19.86 Aligned_cols=38 Identities=8% Similarity=0.002 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHcCCcEEEEEecCCC---------hhhhhhcCceeeC
Q 031789 108 IIKFLTDHAHAVGCYKVILDCSLGN---------KAFYEKCGLKQKG 145 (153)
Q Consensus 108 ll~~~~~~~~~~g~~~~~~~~~~~n---------~~~y~k~Gf~~~~ 145 (153)
-++..++++++.|+..+.+....-. ++..++.||+...
T Consensus 85 ~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 85 KFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp -HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred hHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 4577888888899999888664322 4777788888653
No 266
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=21.87 E-value=1.9e+02 Score=19.85 Aligned_cols=43 Identities=23% Similarity=0.149 Sum_probs=32.0
Q ss_pred CcccCchHHHHHHHHHHHHHHc-CCcEEEEEecCCC-hhhhhhcCc
Q 031789 98 SARGMQLGKKIIKFLTDHAHAV-GCYKVILDCSLGN-KAFYEKCGL 141 (153)
Q Consensus 98 ~~rg~Gig~~ll~~~~~~~~~~-g~~~~~~~~~~~n-~~~y~k~Gf 141 (153)
+-|| |+|+.-+...+.++-.. |-..+.++.++.| .++.-.+.+
T Consensus 8 s~kG-GvG~TTltAnLA~aL~~~G~~VlaID~dpqN~Lrlhfg~~~ 52 (243)
T PF06564_consen 8 SPKG-GVGKTTLTANLAWALARLGESVLAIDLDPQNLLRLHFGLPL 52 (243)
T ss_pred cCCC-CCCHHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHhcCCCC
Confidence 3455 99999999988888665 8888888888888 355544444
No 267
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=21.65 E-value=1.9e+02 Score=20.62 Aligned_cols=46 Identities=13% Similarity=0.235 Sum_probs=33.9
Q ss_pred cccCchHHHHHHHHHHHHHHcCCcEEEEEecCC-C----hhhhhhcCceee
Q 031789 99 ARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLG-N----KAFYEKCGLKQK 144 (153)
Q Consensus 99 ~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~-n----~~~y~k~Gf~~~ 144 (153)
.+..|+.+.-+..+++.|++.|+-++.+..... + .++=+++|-+.+
T Consensus 36 A~~lgiSR~~VsRlL~~Ar~~GiV~I~I~~~~~~~~~Le~~L~~~fgLk~~ 86 (318)
T PRK15418 36 GERLGLTRLKVSRLLEKGRQSGIIRVQINSRFEGCLELENALRQHFSLQHI 86 (318)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCcEEEEEeCCCccHHHHHHHHHHHhCCCEE
Confidence 456788889999999999999999888865322 2 266666776654
No 268
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=21.57 E-value=92 Score=13.49 Aligned_cols=17 Identities=12% Similarity=0.428 Sum_probs=9.9
Q ss_pred EEEEEEeCCCCceEEEEEE
Q 031789 56 IVCVIEDDRSGKIIATGSI 74 (153)
Q Consensus 56 ~~~~~~~~~~~~~vG~~~~ 74 (153)
.+.+..++ ++++|++..
T Consensus 25 ~~~v~~~~--~~~~g~i~~ 41 (49)
T smart00116 25 RLPVVDEE--GRLVGIVTR 41 (49)
T ss_pred cccEECCC--CeEEEEEEH
Confidence 34444443 788887653
No 269
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=21.54 E-value=1.7e+02 Score=16.71 Aligned_cols=19 Identities=26% Similarity=0.480 Sum_probs=11.3
Q ss_pred eEEEEEEeCCCCceEEEEEEE
Q 031789 55 HIVCVIEDDRSGKIIATGSIF 75 (153)
Q Consensus 55 ~~~~~~~~~~~~~~vG~~~~~ 75 (153)
..+.|..+ +++++|.+...
T Consensus 100 ~~lpVvd~--~~~~vGiit~~ 118 (123)
T cd04627 100 SSVAVVDN--QGNLIGNISVT 118 (123)
T ss_pred ceEEEECC--CCcEEEEEeHH
Confidence 33444434 38899987653
No 270
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=21.47 E-value=1.6e+02 Score=16.10 Aligned_cols=17 Identities=6% Similarity=0.210 Sum_probs=10.6
Q ss_pred EEEEEEeCCCCceEEEEEE
Q 031789 56 IVCVIEDDRSGKIIATGSI 74 (153)
Q Consensus 56 ~~~~~~~~~~~~~vG~~~~ 74 (153)
.+.+..+ +|+++|++..
T Consensus 85 ~~~Vv~~--~g~~~Gvi~~ 101 (107)
T cd04610 85 KLPVVDE--NNNLVGIITN 101 (107)
T ss_pred eEeEECC--CCeEEEEEEH
Confidence 3444444 3889998764
No 271
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=21.46 E-value=1.9e+02 Score=16.95 Aligned_cols=26 Identities=8% Similarity=0.064 Sum_probs=19.6
Q ss_pred HHHHHHHHHHcCCcEEEEEecCCChh
Q 031789 109 IKFLTDHAHAVGCYKVILDCSLGNKA 134 (153)
Q Consensus 109 l~~~~~~~~~~g~~~~~~~~~~~n~~ 134 (153)
.-.++..+++.|+..+.+.++++...
T Consensus 14 a~r~~ra~r~~Gi~tv~v~s~~d~~s 39 (110)
T PF00289_consen 14 AVRIIRALRELGIETVAVNSNPDTVS 39 (110)
T ss_dssp HHHHHHHHHHTTSEEEEEEEGGGTTG
T ss_pred HHHHHHHHHHhCCcceeccCchhccc
Confidence 44566667788999999999876643
No 272
>PRK00301 aat leucyl/phenylalanyl-tRNA--protein transferase; Reviewed
Probab=21.44 E-value=2.8e+02 Score=18.99 Aligned_cols=112 Identities=14% Similarity=0.124 Sum_probs=62.7
Q ss_pred CCCcchHHHHHHhhhc--CCCCCChHHHHHHHHhhccCCCceEEEEEEeCCCCceEEEEEEEeeeeeecCCCceeEEeeE
Q 031789 16 ITDKSKGFIELLQQLS--VCDSVSDKQFEERFLELNSYGDDHIVCVIEDDRSGKIIATGSIFIEKKFLRNCGKVGHIEDV 93 (153)
Q Consensus 16 ~~D~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~ 93 (153)
..++. ++++...... ....|-.+++.+.+.++...+..+. +-+.++ |++||-.....- +. ++.+.-
T Consensus 89 n~aF~-~Vi~~Ca~~~~~~~~TWI~~e~~~aY~~LH~~G~AHS-VE~W~~--~~LvGGlYGv~i-------G~-~F~GES 156 (233)
T PRK00301 89 DTAFA-AVIRACAAPRPGQEGTWITPEIIEAYLELHELGHAHS-VEVWQG--GELVGGLYGVAL-------GR-AFFGES 156 (233)
T ss_pred cccHH-HHHHHHccCCCCCCCCCCCHHHHHHHHHHHHcCceEE-EEEEEC--CEEEeeeecccc-------CC-EEeecc
Confidence 45566 4666665433 2335766677777776666553433 344454 889986433310 11 111111
Q ss_pred EeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCChhhhhhcCceeeC
Q 031789 94 VVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGNKAFYEKCGLKQKG 145 (153)
Q Consensus 94 ~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~~y~k~Gf~~~~ 145 (153)
. =+|...-+|..+-++.++.+..|+..+.+..... -.+++|-+.+.
T Consensus 157 M---Fs~~~nASKvAl~~L~~~L~~~g~~liD~Q~~t~---HL~slGa~~i~ 202 (233)
T PRK00301 157 M---FSRATDASKVALAALVEHLRRHGFKLIDCQVLNP---HLASLGAREIP 202 (233)
T ss_pred c---ccCCCChHHHHHHHHHHHHHHCCceEEEECCCCH---HHHhcCCEEcC
Confidence 1 1233567778889999999999988666544222 34555655544
No 273
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=21.22 E-value=1e+02 Score=21.67 Aligned_cols=28 Identities=21% Similarity=0.413 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEecCCC
Q 031789 105 GKKIIKFLTDHAHAVGCYKVILDCSLGN 132 (153)
Q Consensus 105 g~~ll~~~~~~~~~~g~~~~~~~~~~~n 132 (153)
|+-+++++++.+...|++.+.+.++...
T Consensus 33 gkPiI~~vl~~l~~~Gi~~ivivv~~~~ 60 (297)
T TIGR01105 33 DKPMIQYIVDEIVAAGIKEIVLVTHASK 60 (297)
T ss_pred CEEHHHHHHHHHHHCCCCEEEEEecCCh
Confidence 5789999999999999999999887654
No 274
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=21.17 E-value=2.2e+02 Score=20.83 Aligned_cols=51 Identities=20% Similarity=0.354 Sum_probs=33.1
Q ss_pred EeeEEeCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEecCCC----hhhhhhcCceeeCce
Q 031789 90 IEDVVVDASARGMQLGKKIIKFLTDHAHAVGCYKVILDCSLGN----KAFYEKCGLKQKGIH 147 (153)
Q Consensus 90 i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n----~~~y~k~Gf~~~~~~ 147 (153)
.+.+.+||.++ |+...+++.+.+. .--..+++.+++.. .+.+ .||+.....
T Consensus 301 ~D~vi~DPPr~--G~~~~~l~~l~~~---~p~~ivyvsc~p~TlaRDl~~L--~gy~l~~~~ 355 (374)
T TIGR02085 301 PELVLVNPPRR--GIGKELCDYLSQM---APKFILYSSCNAQTMAKDIAEL--SGYQIERVQ 355 (374)
T ss_pred CCEEEECCCCC--CCcHHHHHHHHhc---CCCeEEEEEeCHHHHHHHHHHh--cCceEEEEE
Confidence 35578999964 8888888877642 11245667776654 3444 689877654
No 275
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=21.15 E-value=3.3e+02 Score=19.76 Aligned_cols=37 Identities=30% Similarity=0.282 Sum_probs=27.3
Q ss_pred eEEEEEEeCCCCceEEEEEEEeeeeeecCCCceeEEeeEEeCcCccc
Q 031789 55 HIVCVIEDDRSGKIIATGSIFIEKKFLRNCGKVGHIEDVVVDASARG 101 (153)
Q Consensus 55 ~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~v~p~~rg 101 (153)
..++++.-. +|.+|+++.+. +.+-+|-.+.|.|..|.
T Consensus 282 CGv~vidl~-tG~vv~~l~fe---------g~v~EifdV~vLPg~r~ 318 (335)
T TIGR03032 282 CGVAVIDLN-SGDVVHWLRFE---------GVIEEIYDVAVLPGVRR 318 (335)
T ss_pred ccEEEEECC-CCCEEEEEEeC---------CceeEEEEEEEecCCCC
Confidence 345555543 69999998775 45678889999999875
No 276
>COG4904 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.12 E-value=44 Score=20.89 Aligned_cols=14 Identities=36% Similarity=0.755 Sum_probs=11.2
Q ss_pred hhhhhhcCceeeCc
Q 031789 133 KAFYEKCGLKQKGI 146 (153)
Q Consensus 133 ~~~y~k~Gf~~~~~ 146 (153)
..||++.||+-...
T Consensus 73 ~~FYEnyGf~A~el 86 (174)
T COG4904 73 EAFYENYGFSAGEL 86 (174)
T ss_pred HHHHHHcCCCcCCC
Confidence 48999999987643
No 277
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=21.05 E-value=2.4e+02 Score=17.99 Aligned_cols=54 Identities=17% Similarity=0.148 Sum_probs=29.3
Q ss_pred EEeeEEeCcCcccCchHHHHHHHHHHHHHHcC--CcEEEEEecCCCh-hhhhhcCceeeCc
Q 031789 89 HIEDVVVDASARGMQLGKKIIKFLTDHAHAVG--CYKVILDCSLGNK-AFYEKCGLKQKGI 146 (153)
Q Consensus 89 ~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g--~~~~~~~~~~~n~-~~y~k~Gf~~~~~ 146 (153)
....+.+||.| +...++....+.++... -.++.+.+...+. .+.+.+|++....
T Consensus 86 ~~d~vv~DPPF----l~~ec~~k~a~ti~~L~k~~~kii~~Tg~~~~~~~~~ll~~~~~~f 142 (162)
T PF10237_consen 86 KFDVVVIDPPF----LSEECLTKTAETIRLLLKPGGKIILCTGEEMEELIKKLLGLRMCDF 142 (162)
T ss_pred CceEEEECCCC----CCHHHHHHHHHHHHHHhCccceEEEecHHHHHHHHHHHhCeeEEeE
Confidence 44567899999 55666655555444332 2355555544442 3333346655543
No 278
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=20.86 E-value=1.5e+02 Score=21.46 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEecCCC
Q 031789 105 GKKIIKFLTDHAHAVGCYKVILDCSLGN 132 (153)
Q Consensus 105 g~~ll~~~~~~~~~~g~~~~~~~~~~~n 132 (153)
|+-++.+.+++.++.|+..+++.+...+
T Consensus 31 gkPii~~~l~~L~~~Gv~eivi~~~y~~ 58 (358)
T COG1208 31 GKPLIEYVLEALAAAGVEEIVLVVGYLG 58 (358)
T ss_pred CccHHHHHHHHHHHCCCcEEEEEeccch
Confidence 6789999999999999999999886555
No 279
>TIGR00151 ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase. Members of this protein family are 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, the IspF protein of the deoxyxylulose (non-mevalonate) pathway of IPP biosynthesis. This protein occurs as an IspDF bifunctional fusion protein in about 20 percent of bacterial genomes.
Probab=20.78 E-value=2.4e+02 Score=17.93 Aligned_cols=33 Identities=12% Similarity=0.169 Sum_probs=25.0
Q ss_pred eCcCcccCchHHHHHHHHHHHHHHcCCcEEEEEe
Q 031789 95 VDASARGMQLGKKIIKFLTDHAHAVGCYKVILDC 128 (153)
Q Consensus 95 v~p~~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~ 128 (153)
.+|.|+|.- ...+++.+.+.+++.|+.-..+.+
T Consensus 63 td~~~k~~~-S~~lL~~~~~~~~~~g~~i~niD~ 95 (155)
T TIGR00151 63 TDPRWKGAD-SRVLLRHAVALIKEKGYRIGNVDI 95 (155)
T ss_pred CChhhCCCC-HHHHHHHHHHHHHHcCCEEEEEEE
Confidence 467777655 678999999999998887655544
No 280
>PF04919 DUF655: Protein of unknown function (DUF655); InterPro: IPR007003 This family includes several uncharacterised archaeal proteins.; PDB: 2I5H_A.
Probab=20.67 E-value=1.2e+02 Score=19.83 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=12.6
Q ss_pred chHHHHHHHHHHHHHHcC
Q 031789 103 QLGKKIIKFLTDHAHAVG 120 (153)
Q Consensus 103 Gig~~ll~~~~~~~~~~g 120 (153)
|||++++..+++.=+...
T Consensus 123 GIGKK~m~~ILeERkkkp 140 (181)
T PF04919_consen 123 GIGKKTMWKILEERKKKP 140 (181)
T ss_dssp T--HHHHHHHHHHHHHS-
T ss_pred cccHHHHHHHHHHHccCC
Confidence 999999999998765543
No 281
>PF03465 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination but this awaits experimental verification.; PDB: 3OBY_A 3E1Y_D 1DT9_A 2KTU_A 2KTV_A 3IR9_A 3E20_H 3OBW_A 3AGJ_F 3MCA_B ....
Probab=20.60 E-value=1.4e+02 Score=17.55 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHcCCcEEEEEecCC-ChhhhhhcC
Q 031789 108 IIKFLTDHAHAVGCYKVILDCSLG-NKAFYEKCG 140 (153)
Q Consensus 108 ll~~~~~~~~~~g~~~~~~~~~~~-n~~~y~k~G 140 (153)
++..+.+.+.+.|.....+...+. ...|++.+|
T Consensus 70 ~i~~l~~~a~~~g~~v~iis~~~e~G~~L~~~~g 103 (113)
T PF03465_consen 70 LIEELIELAEQSGAKVEIISSEHEEGEQLLKGFG 103 (113)
T ss_dssp HHHHHHHHHHHTTSEEEEE-TTSHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCEEEEEcCCCccHHHHHhcCC
Confidence 789999999999986555543322 146666665
No 282
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=20.40 E-value=1.3e+02 Score=19.95 Aligned_cols=38 Identities=24% Similarity=0.280 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHc-CCcEEEEEecCCC-hhhhhhcCce
Q 031789 105 GKKIIKFLTDHAHAV-GCYKVILDCSLGN-KAFYEKCGLK 142 (153)
Q Consensus 105 g~~ll~~~~~~~~~~-g~~~~~~~~~~~n-~~~y~k~Gf~ 142 (153)
|+-|+.+.++.+.+. ++..+++.++... ..+.++.|..
T Consensus 26 GkPli~~~i~~l~~~~~~~~ivv~t~~~~i~~~~~~~~~~ 65 (238)
T PRK13368 26 GKPMIQHVYERAAQAAGVEEVYVATDDQRIEDAVEAFGGK 65 (238)
T ss_pred CcCHHHHHHHHHHhcCCCCeEEEECChHHHHHHHHHcCCe
Confidence 578888889888887 7888888765433 2444455543
No 283
>TIGR01440 conserved hypothetical protein TIGR01440. Members of this family are uncharacterized proteins of about 180 amino acids from the Bacillus/Clostridium group of Gram-positive bacteria, found in no more than one copy per genome.
Probab=20.36 E-value=2.2e+02 Score=18.32 Aligned_cols=45 Identities=18% Similarity=0.312 Sum_probs=34.3
Q ss_pred CchHHHHHHHHHHHHHHcCCcEEEEEecCCCh------hhhhhcCceeeCc
Q 031789 102 MQLGKKIIKFLTDHAHAVGCYKVILDCSLGNK------AFYEKCGLKQKGI 146 (153)
Q Consensus 102 ~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~------~~y~k~Gf~~~~~ 146 (153)
.-+|+.+++.+.+...+.|+....=.|..-|+ ...++.||+.+..
T Consensus 42 ~eva~~i~~~l~~~~~~~gi~lA~Q~CEHlNRALvvEr~~a~~~~le~V~V 92 (172)
T TIGR01440 42 MEVAETIVNALDVVLKKTGVTLAFQGCEHINRALVMERSVAEPLGMEEVSV 92 (172)
T ss_pred HHHHHHHHHHHHHHhhhcCeEEEEechhhhhHHHHHhHHHHHHcCCceEEE
Confidence 45888999999998888888766666655552 4888889988765
No 284
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=20.29 E-value=2.2e+02 Score=19.86 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=25.8
Q ss_pred cccCchHHHHHHHHHHHHHHcCCcEEEEEe
Q 031789 99 ARGMQLGKKIIKFLTDHAHAVGCYKVILDC 128 (153)
Q Consensus 99 ~rg~Gig~~ll~~~~~~~~~~g~~~~~~~~ 128 (153)
..|+--|-.-+..+++++...|++.+.+.+
T Consensus 59 ~~GH~aGf~~l~~ile~C~~lGI~~vT~fA 88 (271)
T KOG1602|consen 59 SEGHEAGFEALKEILELCKELGIKEVTVFA 88 (271)
T ss_pred ccchHHHHHHHHHHHHHHHHcCCcEEEEEE
Confidence 556667778899999999999999988877
No 285
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A ....
Probab=20.29 E-value=1.2e+02 Score=15.19 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=10.1
Q ss_pred CchHHHHHHHHHHHHH
Q 031789 102 MQLGKKIIKFLTDHAH 117 (153)
Q Consensus 102 ~Gig~~ll~~~~~~~~ 117 (153)
.|+|.+..+.+++.++
T Consensus 44 ~Gig~~~a~~i~~~~~ 59 (60)
T PF14520_consen 44 PGIGEKTAEKIIEAAR 59 (60)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 4666666666666554
No 286
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=20.02 E-value=1.8e+02 Score=16.23 Aligned_cols=31 Identities=16% Similarity=0.266 Sum_probs=16.2
Q ss_pred HHHHHHhhccCCCceEEEEEEeCCCCceEEEEEE
Q 031789 41 FEERFLELNSYGDDHIVCVIEDDRSGKIIATGSI 74 (153)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~ 74 (153)
..+.+..+...+ ...+.+..++ |+++|.+..
T Consensus 75 l~~al~~m~~~~-~~~lpVvd~~--~~~~Giit~ 105 (111)
T cd04603 75 VTDLLRIFRETE-PPVVAVVDKE--GKLVGTIYE 105 (111)
T ss_pred HHHHHHHHHHcC-CCeEEEEcCC--CeEEEEEEh
Confidence 344444444444 3333444443 889998764
Done!