BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031790
(153 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 29 SKSEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGK-AMXXXXXXXXX 87
S V+ LT + F D + E T F+KF PWC HCK L WE+L K
Sbjct: 5 SSGTVLALTENNFDDTIAEGIT--FIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIA 62
Query: 88 XXXCGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFVLEEAE 139
C A + +CSK + YPT +F GK+V+++ G RD++SL FVL +A+
Sbjct: 63 EVDCTAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFVLSQAK 114
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 59/109 (54%), Gaps = 3/109 (2%)
Query: 31 SEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGK-AMXXXXXXXXXXX 89
S V+ LT + F D + E T F+KF PWC HCK L WE+L K
Sbjct: 5 STVLALTENNFDDTIAEGIT--FIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEV 62
Query: 90 XCGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFVLEEA 138
C A + +CSK + YPT +F GK+V+++ G RD++SL FVL +A
Sbjct: 63 DCTAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFVLSQA 111
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 33 VITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGK-AMXXXXXXXXXXXXC 91
V+ LT + F D + E T F+KF PWC HCK L WE+L K C
Sbjct: 2 VLALTENNFDDTIAEGIT--FIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDC 59
Query: 92 GASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFVLEEAE 139
A + +CSK + YPT +F GK+V+++ G RD++SL FVL +A+
Sbjct: 60 TAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFVLSQAK 107
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 31 SEVITLTPDTFTDKVKEKDTA--WFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXX 88
S+V+ LT D F ++ + +A V+F PWC HCK L +E A
Sbjct: 1 SDVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYE--AAATRLKGIVPLAK 58
Query: 89 XXCGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFVLEEAEKAA 142
C A+ C+K + YPT K+F DG+E Y GPR + + + + ++A A+
Sbjct: 59 VDCTANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQAGPAS 112
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Query: 31 SEVITLTPDTFTDKVKEKDTA--WFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXX 88
S+V+ LT D F ++ + +A V+F PWC H K L +E A
Sbjct: 1 SDVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYE--AAATRLKGIVPLAK 58
Query: 89 XXCGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFVLEEAEKAAT 143
C A+ C+K + YPT K+F DG+E Y GPR + + + + ++A A+
Sbjct: 59 VDCTANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQAGPASV 113
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Query: 33 VITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXCG 92
V + + F + V ++ ++F PWC HCKNL +++LG+ +
Sbjct: 354 VKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDAT 413
Query: 93 ASKTLCSKVDIHSYPTFKVFYDGKEV--AKYQGPRDVESLKTFVLEEA 138
A+ + S ++ +PT K++ KY+G R++ +++ EA
Sbjct: 414 AN-DVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQREA 460
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 66.2 bits (160), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 48/113 (42%), Gaps = 3/113 (2%)
Query: 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXC 91
E+ITL F V + WFV F P C HC +L W + K + C
Sbjct: 98 EIITLERREFDAAVNSGEL-WFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVN--C 154
Query: 92 GASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFVLEEAEKAATK 144
G + LC ++SYP+ +F G KY G R ESL F ++ T+
Sbjct: 155 GDDRMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRSTVTE 207
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 29 SKSEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXX 88
S +VI LT D+F V + + W V+F PWC HCKNL W +
Sbjct: 5 SSGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKL 64
Query: 89 XXCGAS--KTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFVLEEAEKAATKAQ 146
A+ + L S+ I +PT K+F G+ Y G R + + L+ A +
Sbjct: 65 AAVDATVNQVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSDNAPPPE 124
Query: 147 L 147
L
Sbjct: 125 L 125
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 3/111 (2%)
Query: 29 SKSEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXX 88
S ++LT D F D V D V+F PWC HCK L +E K +
Sbjct: 5 SSGVTLSLTKDNFDDVVNNADII-LVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLA 63
Query: 89 XXCGASKT-LCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFVLEEA 138
+T L + D+ YPT K+F G+ Y GPR+ + +++E++
Sbjct: 64 KVDATEQTDLAKRFDVSGYPTLKIFRKGRPF-DYNGPREKYGIVDYMIEQS 113
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
Query: 26 MIHSKSEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXX 85
+ S +VI LTP F +V + D W V+F PWC HC+ L W+ A+
Sbjct: 12 LYSSSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVG 71
Query: 86 XXXXXCGASKTLCSKVDIHSYPTFKVFYDGKEVAK-YQGPRDVESL 130
++L + + +PT K+F K + YQG R E++
Sbjct: 72 AVNAD--KHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAI 115
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 34 ITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXCGA 93
+ LT + F + V + D V+F PWC HCK L +E K +
Sbjct: 133 LVLTKENFDEVVNDADII-LVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDAT 191
Query: 94 SKT-LCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFVLEEAEKAAT 143
++T L + D+ YPT K+F G+ Y GPR+ + +++E++ AA+
Sbjct: 192 AETDLAKRFDVSGYPTLKIFRKGRPY-DYNGPREKYGIVDYMIEQSGAAAS 241
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 3/111 (2%)
Query: 27 IHSKSEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXX 86
+ ++ V+ L F + V +KDT ++F PWC HCK +E + +
Sbjct: 11 VKEENGVLVLNDANFDNFVADKDTV-LLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIP 69
Query: 87 XXXXCGASKT-LCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFVLE 136
S + L S+ D+ YPT K+ G+ V Y+G R E + V E
Sbjct: 70 VAKIDATSASVLASRFDVSGYPTIKILKKGQAV-DYEGSRTQEEIVAKVRE 119
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 4/121 (3%)
Query: 25 AMIHSKSEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXX 84
A+ S V+ L D+F + ++ D +F PWC HCKN+ + + +
Sbjct: 8 AVAPEDSAVVKLATDSFNEYIQSHDLV-LAEFFAPWCGHCKNMAPEYVKAAETL-VEKNI 65
Query: 85 XXXXXXCGASKTLCSKVDIHSYPTFKVF--YDGKEVAKYQGPRDVESLKTFVLEEAEKAA 142
C ++ LC + +I +P+ K+F D Y+GPR E++ F++++++ A
Sbjct: 66 TLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQPAV 125
Query: 143 T 143
Sbjct: 126 A 126
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 46/121 (38%), Gaps = 23/121 (19%)
Query: 28 HSKSEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXX 87
+ S V L + V + V + PWC HCK L +++L
Sbjct: 355 NQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYAN------- 407
Query: 88 XXXCGASKTLCSKVD----------IHSYPTFKVFYDGK--EVAKYQGPRDVESLKTFVL 135
S L +K+D I YPT ++ GK E YQG R ++SL F+
Sbjct: 408 ----ATSDVLIAKLDHTENDVRGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIK 463
Query: 136 E 136
E
Sbjct: 464 E 464
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 58.2 bits (139), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 47/117 (40%), Gaps = 3/117 (2%)
Query: 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXC 91
E+ITL F V + WFV F P H +L W + K + C
Sbjct: 117 EIITLERREFDAAVNSGEL-WFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVN--C 173
Query: 92 GASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFVLEEAEKAATKAQLG 148
G + LC ++SYP+ +F G KY G R ESL F ++ T+ G
Sbjct: 174 GDDRMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRSTVTELSTG 230
Score = 48.5 bits (114), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Query: 33 VITLTPDTFTDKVKEK--DTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXX 90
V++LTP TF + VK++ D W V F PW + L W+ + + +
Sbjct: 545 VVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTL--TGLINVGSVD 602
Query: 91 CGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQ------GPRDVESLKTFVL 135
CG + C++ ++ YP + FY K YQ RD SL+++ L
Sbjct: 603 CGQYHSFCTQENVQRYPEIR-FYPQKSSKAYQYHSYNGWNRDAYSLRSWGL 652
Score = 47.4 bits (111), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 6/122 (4%)
Query: 34 ITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXCGA 93
I LTP TF +KV + T W V F PW +N +E L + + C A
Sbjct: 660 IDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMI--KGKVRAGKVDCQA 717
Query: 94 SKTLCSKVDIHSYPTFKVF-YDGKEVAKYQ---GPRDVESLKTFVLEEAEKAATKAQLGG 149
C K I +YP+ K++ Y+ + + ++ RD +++ + + E ++ +
Sbjct: 718 YPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLETLQSQVKRNK 777
Query: 150 DK 151
D+
Sbjct: 778 DE 779
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 8/105 (7%)
Query: 31 SEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXX-XX 89
S V TL P F KE W V F PW + +L +L KA
Sbjct: 440 SHVTTLGPQNFPASDKE---PWLVDFFAPWSPPSR---ALLPELRKASTLLYGQLKVGTL 493
Query: 90 XCGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFV 134
C + LC+ +I +YPT VF + + +Y+G E + F+
Sbjct: 494 DCTIHEGLCNMYNIQAYPTTVVF-NQSSIHEYEGHHSAEQILEFI 537
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 4/107 (3%)
Query: 30 KSEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXX 89
K V L F D ++ FV+F PWC HCK L +W+ LG+
Sbjct: 248 KQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKM 307
Query: 90 XCGASKTLCSKVDIHSYPTFKVFYDG--KEVAKYQGPRDVESLKTFV 134
A++ V +HS+PT K F + V Y G R ++ K F+
Sbjct: 308 DSTANE--VEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFL 352
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 34 ITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXCGA 93
I LTP TF +KV + T W V F PWC C+N +E L + + C A
Sbjct: 6 IDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMI--KGKVRAGKVDCQA 63
Query: 94 SKTLCSKVDIHSYPTFKVF 112
C K I +YP+ K++
Sbjct: 64 YPQTCQKAGIKAYPSVKLY 82
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
Query: 29 SKSEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXX 88
S V L F D ++ FV+F PWC HCK L +W+ LG+
Sbjct: 5 SSGPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAK 64
Query: 89 XXCGASKTLCSKVDIHSYPTFKVFYDG--KEVAKYQGPRDVESLKTFV 134
A++ V +HS+PT K F + V Y G R ++ K F+
Sbjct: 65 MDSTANEV--EAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFL 110
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%)
Query: 29 SKSEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXX 88
S + LTP +F + + V+F PWC HCK L S + K +
Sbjct: 15 SDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVN 74
Query: 89 XXCGASKTLCSKVDIHSYPTFKVF 112
+K LC+K D++ +PT VF
Sbjct: 75 CDLNKNKALCAKYDVNGFPTLMVF 98
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 3/111 (2%)
Query: 27 IHSKSEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXX 86
+ ++ V L F + V +KDT ++F PWC HCK +E + +
Sbjct: 13 VKEENGVWVLNDGNFDNFVADKDTV-LLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIA 71
Query: 87 XXXXCGASKT-LCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFVLE 136
S + L SK D+ YPT K+ G+ V Y G R E + V E
Sbjct: 72 VAKIDATSASMLASKFDVSGYPTIKILKKGQAV-DYDGSRTQEEIVAKVRE 121
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 52/125 (41%), Gaps = 4/125 (3%)
Query: 29 SKSEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXX 88
S V + TF V + ++F PWC HCK L ++ LGK
Sbjct: 5 SSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAK 64
Query: 89 XXCGASKTLCSKVDIHSYPT--FKVFYDGKEVAKYQGP-RDVESLKTFVLEEAEK-AATK 144
A+ + + +PT F D K K++G RD+E L F+ E A K + TK
Sbjct: 65 MDATANDITNDQYKVEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKRSRTK 124
Query: 145 AQLGG 149
+L G
Sbjct: 125 EELSG 129
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 20/127 (15%)
Query: 27 IHSKSEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXX 86
+ S+ V + + + V + ++F PWC HCK L +E+LG
Sbjct: 3 LGSEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFK-- 60
Query: 87 XXXXCGASKTLCSKVD---------IHSYPTFKVFYDGK--EVAKYQGPRDVESLKTFVL 135
+ + +KVD I +PT K++ G + Y G R VE L F+
Sbjct: 61 -------DRVVIAKVDATANDVPDEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIA 113
Query: 136 EEAEKAA 142
E + A
Sbjct: 114 ENGKYKA 120
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Query: 33 VITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXCG 92
V + + F + V ++ ++F PWC HCKNL +++LG+ +
Sbjct: 29 VKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDAT 88
Query: 93 ASKTLCSKVDIHSYPTFKVFYDGKEVA--KYQGPRDVESLKTFVLEEA 138
A+ + S ++ +PT K++ KY+G R++ +++ EA
Sbjct: 89 AN-DVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQREA 135
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 2/102 (1%)
Query: 33 VITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXCG 92
VI +T + F +V + D V F PWC C+ + + E+L K
Sbjct: 3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNV--D 60
Query: 93 ASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFV 134
+ ++ I S PT +F +G+ V + G + E+LK +
Sbjct: 61 ENPNTAAQYGIRSIPTLLLFKNGQVVDRLVGAQPKEALKERI 102
>pdb|3H79|A Chain A, Crystal Structure Of Trypanosoma Cruzi Thioredoxin-like
Hypothetical Protein Q4dv70
Length = 127
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 5/111 (4%)
Query: 31 SEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXX-XXX 89
S V+ LT +TF V + + FV + VPW +H LW+DL +
Sbjct: 15 SRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAA 74
Query: 90 XCGASK--TLCSKVDIHSYPTFKVF--YDGKEVAKYQGPRDVESLKTFVLE 136
K + ++ + +PT + + D +E +Y G R + + +FV +
Sbjct: 75 RIDGEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQ 125
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 52 WFVKFCVPWCKHCKNLGSLWE---DLGKAMXXXXXXXXXXXXCGASKTLCSKVDIHSYPT 108
W ++F PWC C+NL WE + G+ + G L + I++ PT
Sbjct: 25 WMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPG----LSGRFIINALPT 80
Query: 109 FKVFYDGKEVAKYQGPRDVESLKTFVLEEAEKA 141
DG E +YQGPR + F+ ++ K+
Sbjct: 81 IYHCKDG-EFRRYQGPRTKKDFINFISDKEWKS 112
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 3/104 (2%)
Query: 31 SEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXX 90
+V + P + + D V F PWC C+ + ++ +
Sbjct: 47 GKVAGIDPAILA-RAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQ 105
Query: 91 CGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFV 134
A + + I P F +F+ G+E+A+ G R L FV
Sbjct: 106 --AHPAVAGRHRIQGIPAFILFHKGRELARAAGARPASELVGFV 147
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 6/112 (5%)
Query: 31 SEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWED----LGKAMXXXXXXXX 86
SE+ +L + + + D A V F WC+ + L ++E+ + +
Sbjct: 5 SEITSLDTENIDEILNNADVA-LVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVF 63
Query: 87 XXXXCGASKTLCSKVDIHSYPTFKVFYDGKEVAK-YQGPRDVESLKTFVLEE 137
C + + I YPT K+F +G + Y+G R V++L ++ ++
Sbjct: 64 ARVDCDQHSDIAQRYRISKYPTLKLFRNGXXXKREYRGQRSVKALADYIRQQ 115
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 2/103 (1%)
Query: 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXC 91
++I LT D+F V + D A V F WC HCK + + +++ A
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEI--ADEYQGKLTVAKLNI 60
Query: 92 GASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFV 134
+ K I PT +F +G+ A G LK F+
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103
>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1
Length = 244
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 8/122 (6%)
Query: 27 IHSKSEVITL-TPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXX 85
++S S+ +TL DT V +AW V+F WC HC W L + +
Sbjct: 7 LYSPSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPAL 66
Query: 86 XXXXXCGASKT---LCSKVDIHSYPTFKVF----YDGKEVAKYQGPRDVESLKTFVLEEA 138
A +T +C +I +PT + F +G DV++L+ +++
Sbjct: 67 YLAALDCAEETNSAVCRDFNIPGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRERLIDAL 126
Query: 139 EK 140
E
Sbjct: 127 ES 128
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
Query: 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXC 91
EVI T +T DK+ + D + F PWC C++ ++ + A
Sbjct: 39 EVINATAETL-DKLLQDDLPXVIDFWAPWCGPCRSFAPIFAE--TAAERAGKVRFVKVNT 95
Query: 92 GASKTLCSKVDIHSYPTFKVFYDGKEVAKYQG 123
A L ++ I S PT ++ +GK + G
Sbjct: 96 EAEPALSTRFRIRSIPTIXLYRNGKXIDXLNG 127
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 40/103 (38%), Gaps = 2/103 (1%)
Query: 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXC 91
++I LT D+F V + D A V F WC CK + + +D+ A
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDI--ADEYQGKLTVAKLNI 60
Query: 92 GASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFV 134
+ K I PT +F +G+ A G LK F+
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 2/103 (1%)
Query: 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXC 91
++I LT D+F V + D A V F WC CK + + +++ A
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEI--ADEYQGKLTVAKLNI 60
Query: 92 GASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFV 134
+ K I S PT +F +G+ A G LK F+
Sbjct: 61 DQNPGTAPKYGIRSIPTLLLFKNGEVAATKVGALSKGQLKEFL 103
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 2/103 (1%)
Query: 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXC 91
++I LT D+F V + D A V F WC CK + S+ +++ A
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEI--ADEYQGKLTVAKLNI 60
Query: 92 GASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFV 134
+ K I PT +F +G+ A G LK F+
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 40/103 (38%), Gaps = 2/103 (1%)
Query: 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXC 91
++I LT D+F V + D A V F WC CK + + E++ A
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEI--ADEYQGKLTVAKLNI 60
Query: 92 GASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFV 134
+ K I PT +F +G+ A G LK F+
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103
>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn
Length = 287
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 61 CKHCKNLGSLWEDLGKAMXXXXXXXXXXXXCGASKTLCSKVDIHSYPTFKVFYDGKEVAK 120
+HC L + E L A C A + + ++ + + PT +F +G+ V
Sbjct: 38 SQHCLQLTPILESL--AAQYNGQFILAKLDCDAEQMIAAQFGLRAIPTVYLFQNGQPVDG 95
Query: 121 YQGPRDVESLKTFV 134
+QGP+ E+++ +
Sbjct: 96 FQGPQPEEAIRALL 109
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 2/103 (1%)
Query: 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXC 91
++I LT D+F V + D A V F WC CK + + +++ A
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEI--AEEYQGKLTVAKLNI 60
Query: 92 GASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFV 134
+ K I PT +F +G+ A G LK F+
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 2/102 (1%)
Query: 33 VITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXCG 92
+I LT D+F V + D A V F WC CK + + +++ A
Sbjct: 14 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEI--ADEYQGKLTVAKLNID 71
Query: 93 ASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFV 134
+ K I PT +F +G+ A G LK F+
Sbjct: 72 QNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 113
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 2/103 (1%)
Query: 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXC 91
++I LT D+F V + D A V F WC CK + + +++ A
Sbjct: 3 KIIHLTEDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEI--ADEYQGKLTVAKLNI 60
Query: 92 GASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFV 134
+ K I PT +F +G+ A G LK F+
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 2/103 (1%)
Query: 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXC 91
++I LT D+F V + D A V F WC CK + + +++ A
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEI--ADEYQGKLTVAKLNI 60
Query: 92 GASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFV 134
+ K I PT +F +G+ A G LK F+
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 2/103 (1%)
Query: 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXC 91
++I LT D+F V + D A V F WC CK + + +++ A
Sbjct: 3 KIIHLTDDSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEI--ADEYQGKLTVAKLNI 60
Query: 92 GASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFV 134
+ K I PT +F +G+ A G LK F+
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 2/103 (1%)
Query: 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXC 91
++I LT D+F V + D A V F WC CK + + +++ A
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEI--ADEYQGKLTVAKLNI 60
Query: 92 GASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFV 134
+ K I PT +F +G+ A G LK F+
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 2/103 (1%)
Query: 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXC 91
++I LT D+F V + D A V F WC CK + + +++ A
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEI--ADEYQGKLTVAKLNI 60
Query: 92 GASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFV 134
+ K I PT +F +G+ A G LK F+
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 2/103 (1%)
Query: 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXC 91
++I LT D+F V + D A V F WC CK + + +++ A
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEI--ADDYQGKLTVAKLNI 60
Query: 92 GASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFV 134
+ K I PT +F +G+ A G LK F+
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 2/103 (1%)
Query: 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXC 91
++I LT D+F V + D A V F WC CK + + +++ A
Sbjct: 4 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEI--ADEYQGKLTVAKLNI 61
Query: 92 GASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFV 134
+ K I PT +F +G+ A G LK F+
Sbjct: 62 DQNPGTAPKYGIRGTPTLLLFKNGEVAATKVGALSKGQLKEFL 104
>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
Length = 519
Score = 35.8 bits (81), Expect = 0.009, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 25 AMIHSKSEVITL-TPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXX 83
++++S S+ +TL D+ V +AW V+F WC H W++L +
Sbjct: 5 SVLYSSSDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRP 64
Query: 84 XXXXXXXCGASKT---LCSKVDIHSYPTFKVF 112
A +T +C + +I +PT + F
Sbjct: 65 ALNLAVLDCAEETNSAVCREFNIAGFPTVRFF 96
>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium
pdb|3QDN|B Chain B, Putative Thioredoxin Protein From Salmonella Typhimurium
Length = 287
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 61 CKHCKNLGSLWEDLGKAMXXXXXXXXXXXXCGASKTLCSKVDIHSYPTFKVFYDGKEVAK 120
+HC L + E L A C A + + ++ + + PT +F +G+ V
Sbjct: 38 SQHCLQLTPVLESL--AAQYHGQFILAKLDCDAEQXIAAQFGLRAIPTVYLFQNGQPVDG 95
Query: 121 YQGPRDVESLKTFV 134
+QGP+ E+++ +
Sbjct: 96 FQGPQPEEAIRALL 109
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 2/103 (1%)
Query: 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXC 91
++I LT D+F V + D A V F WC CK + + +++ A
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEI--ADEYQGKLTVAKLNI 60
Query: 92 GASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFV 134
+ K I PT +F +G+ A G LK F+
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKCFL 103
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 2/103 (1%)
Query: 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXC 91
++I LT D+F V + D A V F WC CK + + +++ A
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEI--ADEYQGKLTVAKLNI 60
Query: 92 GASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFV 134
+ K I PT +F +G A G LK F+
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGDVAATKVGALSKGQLKEFL 103
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 53 FVKFCVPWCKHCKNLGSLW-EDLGKAMXXXXXXXXXXXXCGASKTLCSKVDIHSYPTFKV 111
V+F PWC HCK L + + GK L + + YPT K
Sbjct: 28 LVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKF 87
Query: 112 FYDG 115
F +G
Sbjct: 88 FRNG 91
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 2/103 (1%)
Query: 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXC 91
++I LT D+F V + D A V F WC CK + + +++ A
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEI--ADEYQGKLTVAKLNI 60
Query: 92 GASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFV 134
+ K I PT +F +G+ A G LK F+
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKCFL 103
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 2/103 (1%)
Query: 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXC 91
++I LT D+F V + D A V F WC CK + + +++ A
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEI--ADEYQGKLTVAKLNI 60
Query: 92 GASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFV 134
+ K I PT +F +G+ A G LK F+
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Query: 54 VKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXCGASKTLCSKVDIHSYPTFKVFY 113
V F WC C+N+ E L K + ++ +K + + PTF
Sbjct: 24 VDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVD---VDQNEEAAAKYSVTAMPTFVFIK 80
Query: 114 DGKEVAKYQGPRDVESLKTF 133
DGKEV ++ G + + +T
Sbjct: 81 DGKEVDRFSGANETKLRETI 100
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 3/97 (3%)
Query: 38 PDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXCGASKTL 97
PD F D+V +T V F WC CK LG E + L
Sbjct: 21 PD-FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKM--VAKQHGKVVMAKVDIDDHTDL 77
Query: 98 CSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFV 134
+ ++ + PT +G V K+ G +D + L+ F+
Sbjct: 78 AIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFL 114
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 2/103 (1%)
Query: 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXC 91
++I LT D+F V + D A V F WC CK + + +++ A
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEI--ADEYQGKLTVAKLNI 60
Query: 92 GASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFV 134
+ K I PT +F +G+ A G LK F+
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAACKVGALSKGQLKEFL 103
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 2/103 (1%)
Query: 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXC 91
++I LT D+F V + D A V F WC C+ + + +++ A
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEI--ADEYQGKLTVAKLNI 60
Query: 92 GASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFV 134
+ K I PT +F +G+ A G LK F+
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 2/103 (1%)
Query: 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXC 91
++I +T D+F V + D A V F WC CK + + +++ A
Sbjct: 3 KIIHVTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEI--ADEYQGKLTVAKLNI 60
Query: 92 GASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFV 134
+ K I PT +F +G+ A G LK F+
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 34.7 bits (78), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 3/84 (3%)
Query: 43 DKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXCGASKTLCSKVD 102
D + ++ V F WC CK + +E+ K + K +
Sbjct: 20 DSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSE---VTEKEN 76
Query: 103 IHSYPTFKVFYDGKEVAKYQGPRD 126
I S PTFKV+ +G V G D
Sbjct: 77 ITSMPTFKVYKNGSSVDTLLGAND 100
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 34.7 bits (78), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Query: 39 DTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXCGASKTLC 98
DTF + V E V F PWC C+ + + +++ A S +
Sbjct: 9 DTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEI--AGEYKDKLKCVKLNTDESPNVA 66
Query: 99 SKVDIHSYPTFKVFYDGKE 117
S+ I S PT VF GK+
Sbjct: 67 SEYGIRSIPTIMVFKGGKK 85
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 2/103 (1%)
Query: 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXC 91
++I LT ++F V + D A V F WC CK + + +++ A
Sbjct: 3 KIIHLTDESFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEI--ADEYQGKLTVAKLNI 60
Query: 92 GASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFV 134
+ K I PT +F +G+ A G LK F+
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 34.3 bits (77), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 4/98 (4%)
Query: 33 VITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXCG 92
++ +T F KV+ V F WC CK + + E+L A
Sbjct: 5 IVKVTDADFDSKVES--GVQLVDFWATWCGSCKMIAPVLEEL--AADYEGKADILKLDVD 60
Query: 93 ASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESL 130
+ + +K ++ S PT VF DG+ V K G + E+L
Sbjct: 61 ENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENL 98
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 4/102 (3%)
Query: 29 SKSEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXX 88
S ++ +T F KV+ V F WC CK + + E+L A
Sbjct: 2 SHMAIVKVTDADFDSKVESG--VQLVDFWATWCGTCKMIAPVLEEL--AADYEGKADILK 57
Query: 89 XXCGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESL 130
+ + +K ++ S PT VF DG+ V K G + E+L
Sbjct: 58 LDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENL 99
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 34.3 bits (77), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 4/102 (3%)
Query: 29 SKSEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXX 88
S ++ +T F KV+ V F WC CK + + E+L A
Sbjct: 2 SHMAIVKVTDADFDSKVES--GVQLVDFWATWCGPCKMIAPVLEEL--AADYEGKADILK 57
Query: 89 XXCGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESL 130
+ + +K ++ S PT VF DG+ V K G + E+L
Sbjct: 58 LDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENL 99
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 33.5 bits (75), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Query: 56 FCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXCGASKTLCSKVDIHSYPTFKVFYDG 115
F PWC CK + + E+L + M ++ K + S PT V DG
Sbjct: 24 FWAPWCGPCKMIAPVLEELDQEM--GDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDG 81
Query: 116 KEVAKYQGPRDVESLKTFV 134
+ V G + E+L+ V
Sbjct: 82 EVVETSVGFKPKEALQELV 100
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 33.5 bits (75), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 41/107 (38%), Gaps = 3/107 (2%)
Query: 28 HSKSEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXX 87
HS ++I LT D+F V + D A V F WC K + + +++ A
Sbjct: 20 HS-DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEI--ADEYQGKLTVA 76
Query: 88 XXXCGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFV 134
+ K I PT +F +G+ A G LK F+
Sbjct: 77 KLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 123
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 33.5 bits (75), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/100 (20%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Query: 35 TLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXCGAS 94
+L+ F +V++ + F WC+ CK + +E++ M A
Sbjct: 3 SLSDSDFQLEVRQHPDPIIIMFTGSWCQPCKKMKPTFEEMASQMEGDIRFAYMDAE-DAE 61
Query: 95 KTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFV 134
KT+ ++++I + P+ +F DG + G + L+ ++
Sbjct: 62 KTM-AELNIRTLPSLALFVDGMIREVFSGTMNKSDLRYWI 100
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 33.1 bits (74), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 3/81 (3%)
Query: 43 DKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXCGASKTLCSKVD 102
D +D V F WC CK + + E + G + K +
Sbjct: 12 DSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELG---DVAQKNE 68
Query: 103 IHSYPTFKVFYDGKEVAKYQG 123
+ + PT +F +GKEVAK G
Sbjct: 69 VSAMPTLLLFKNGKEVAKVVG 89
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 33.1 bits (74), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 3/81 (3%)
Query: 43 DKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXCGASKTLCSKVD 102
D +D V F WC CK + + E + G + K +
Sbjct: 18 DSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELG---DVAQKNE 74
Query: 103 IHSYPTFKVFYDGKEVAKYQG 123
+ + PT +F +GKEVAK G
Sbjct: 75 VSAMPTLLLFKNGKEVAKVVG 95
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin
With An Arginine Insertion In The Active Site
Length = 109
Score = 33.1 bits (74), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 3/104 (2%)
Query: 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPWC-KHCKNLGSLWEDLGKAMXXXXXXXXXXXX 90
++I LT D+F V + D A V F WC + CK + + +++ A
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEI--ADEYQGKLTVAKLN 60
Query: 91 CGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFV 134
+ K I PT +F +G+ A G LK F+
Sbjct: 61 IDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 104
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 33.1 bits (74), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 49 DTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXCGASKTLCSKVDIHSYPT 108
D V F WC CK + + L + C + + S+ ++ S PT
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDC---QDVASECEVKSMPT 76
Query: 109 FKVFYDGKEVAKYQG 123
F+ F G++V ++ G
Sbjct: 77 FQFFKKGQKVGEFSG 91
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 33.1 bits (74), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
Query: 53 FVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXCGASKTLCSKVDIHSYPTFKVF 112
V F PWC C+ + + E+L A L ++ + S PT +F
Sbjct: 54 LVDFFAPWCGPCRLVSPILEEL--ARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTLVLF 111
Query: 113 YDGKEVAKYQG--PRDV--ESLKTFV 134
G VA + G PR V E L+ ++
Sbjct: 112 RRGAPVATWVGASPRRVLEERLRPYL 137
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 32.7 bits (73), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 2/103 (1%)
Query: 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXC 91
++I LT D+F V + D A V F WC K + + +++ A
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEI--ADEYQGKLTVAKLNI 60
Query: 92 GASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFV 134
+ K I PT +F +G+ A G LK F+
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 32.3 bits (72), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 2/94 (2%)
Query: 30 KSEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXX 89
KS I +T +F V + V F WC CK + + E++ A
Sbjct: 6 KSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEI--ATERATDLTVAKL 63
Query: 90 XCGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQG 123
+ + S PT +F DG+ V + G
Sbjct: 64 DVDTNPETARNFQVVSIPTLILFKDGQPVKRIVG 97
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 2/94 (2%)
Query: 30 KSEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXX 89
KS I +T +F V + V F WC CK + + E++ A
Sbjct: 11 KSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEI--ATERATDLTVAKL 68
Query: 90 XCGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQG 123
+ + S PT +F DG+ V + G
Sbjct: 69 DVDTNPETARNFQVVSIPTLILFKDGQPVKRIVG 102
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
Length = 108
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 2/103 (1%)
Query: 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXC 91
++I LT D+F V + D A V F WC K + + +++ A
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEI--ADEYQGKLTVAKLNI 60
Query: 92 GASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFV 134
+ K I PT +F +G+ A G LK F+
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 40/116 (34%), Gaps = 8/116 (6%)
Query: 28 HSKSEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXX 87
H+K E D K KE + F WC C+ + ++ + K
Sbjct: 20 HNKDEF-----DAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVD 74
Query: 88 XXXCGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFVLEEAEKAAT 143
K + K ++ + PTF DG E K G R + T V AA+
Sbjct: 75 VDEL---KEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAAS 127
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 3/82 (3%)
Query: 44 KVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXCGASKTLCSKVDI 103
K E T V F WC C+ + + DL K + K++ S I
Sbjct: 33 KANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDEL---KSVASDWAI 89
Query: 104 HSYPTFKVFYDGKEVAKYQGPR 125
+ PTF +GK + K G +
Sbjct: 90 QAMPTFMFLKEGKILDKVVGAK 111
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 54 VKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXCGASKTLCSKVDIHSYPTFKVFY 113
V F WC CK + ++ +L K K + + ++ + PTF
Sbjct: 31 VDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDEL---KAVAEEWNVEAMPTFIFLK 87
Query: 114 DGKEVAKYQGPRDVESLKTFVLEEA 138
DGK V K G D + L T V + A
Sbjct: 88 DGKLVDKTVG-ADKDGLPTLVAKHA 111
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 3/93 (3%)
Query: 28 HSKSEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXX 87
H + +T D+F V + D V F WC C+ + E + A
Sbjct: 2 HMAGTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAI--AAEYGDKIEIV 59
Query: 88 XXXCGASKTLCSKVDIHSYPTFKVFYDGKEVAK 120
+ +K + S PT V Y G EVAK
Sbjct: 60 KLNIDENPGTAAKYGVMSIPTLNV-YQGGEVAK 91
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 2/103 (1%)
Query: 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXC 91
++I LT D+F + + D A V F WC CK + + +++ A
Sbjct: 3 KIIHLTDDSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEI--ADEYQGKLTVAKLNI 60
Query: 92 GASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFV 134
+ K PT +F +G+ A G LK F+
Sbjct: 61 DQNPGTAPKYIERGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 30.8 bits (68), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 4/102 (3%)
Query: 29 SKSEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXX 88
S ++ +T F KV+ V F WC K + + E+L A
Sbjct: 2 SHMAIVKVTDADFDSKVESG--VQLVDFWATWCGTSKMIAPVLEEL--AADYEGKADILK 57
Query: 89 XXCGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESL 130
+ + +K ++ S PT VF DG+ V K G + E+L
Sbjct: 58 LDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENL 99
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 30.4 bits (67), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 40/113 (35%), Gaps = 26/113 (23%)
Query: 34 ITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXCGA 93
+ ++ +F V + V F WC CK +G ++GK A
Sbjct: 5 LAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEF--------------A 50
Query: 94 SKTLCSKVDI------------HSYPTFKVFYDGKEVAKYQGPRDVESLKTFV 134
K +KV+I S PT + DGK + K G LK +V
Sbjct: 51 GKVTVAKVNIDDNPETPNAYQVRSIPTLMLVRDGKVIDKKVGALPKSQLKAWV 103
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Query: 56 FCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXCGASKTLCSKVDIHSYPTFKVFYDG 115
F PWC K + + E+L + M ++ K + S PT V DG
Sbjct: 24 FWAPWCGPSKMIAPVLEELDQEM--GDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDG 81
Query: 116 KEVAKYQGPRDVESLKTFV 134
+ V G + E+L+ V
Sbjct: 82 EVVETSVGFKPKEALQELV 100
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Query: 56 FCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXCGASKTLCSKVDIHSYPTFKVFYDG 115
F PWC K + + E+L + M ++ K + S PT V DG
Sbjct: 24 FWAPWCGPSKMIAPVLEELDQEM--GDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDG 81
Query: 116 KEVAKYQGPRDVESLKTFV 134
+ V G + E+L+ V
Sbjct: 82 EVVETSVGFKPKEALQELV 100
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 30.0 bits (66), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
Query: 43 DKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXCGASKTLCSKVD 102
D +D V F WC K + + E + G + K +
Sbjct: 18 DSAIAQDKLVVVDFYATWCGPSKMIAPMIEKFSEQYPQADFYKLDVDELG---DVAQKNE 74
Query: 103 IHSYPTFKVFYDGKEVAKYQG 123
+ + PT +F +GKEVAK G
Sbjct: 75 VSAMPTLLLFKNGKEVAKVVG 95
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 29.3 bits (64), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 4/102 (3%)
Query: 29 SKSEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXX 88
S ++ +T F KV+ V F C CK + + E+L A
Sbjct: 1 SHMAIVKVTDADFDSKVES--GVQLVDFWATACGPCKMIAPVLEEL--AADYEGKADILK 56
Query: 89 XXCGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESL 130
+ + +K ++ S PT VF DG+ V K G + E+L
Sbjct: 57 LDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENL 98
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 29.3 bits (64), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
Query: 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXC 91
EV + ++ + V E + V F PWC CK + + ++L K
Sbjct: 1 EVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEY--SGKIAVYKLNT 58
Query: 92 GASKTLCSKVDIHSYPTFKVFYDGK 116
+ + ++ +I S PT F +G+
Sbjct: 59 DEAPGIATQYNIRSIPTVLFFKNGE 83
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 44 KVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXCGASKTLCSKVDI 103
+V D + F WC CK +G ++E + S+ + +V I
Sbjct: 28 QVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQ-IAQEVGI 86
Query: 104 HSYPTFKVFYDGKEV 118
+ PTF F +G+++
Sbjct: 87 RAMPTFVFFKNGQKI 101
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 45 VKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXCGASKTLCSKVDIH 104
V E + V F PWC CK + + ++L K + + ++ +I
Sbjct: 13 VLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEY--SGKIAVYKLNTDEAPGIATQYNIR 70
Query: 105 SYPTFKVFYDGK 116
S PT F +G+
Sbjct: 71 SIPTVLFFKNGE 82
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 37 TPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKA 77
T + +++KE V F WC C+ LG + + +A
Sbjct: 11 THEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEA 51
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 6/95 (6%)
Query: 31 SEVITLTPDTFTDKVKE--KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXX 88
SE+I L D + + E K+ V F WC CK + L+++L +
Sbjct: 13 SELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYDAIFVKVDVD 72
Query: 89 XXCGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQG 123
++ K +I + PTF +G++V G
Sbjct: 73 KLEETAR----KYNISAMPTFIAIKNGEKVGDVVG 103
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
Length = 140
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 2/88 (2%)
Query: 31 SEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXX 90
S +I T++ +V++ V F P C +CK +E+ K
Sbjct: 6 SSIIEFEDXTWSQQVEDSKKPVVVXFYSPACPYCKAXEPYFEEYAKEY--GSSAVFGRIN 63
Query: 91 CGASKTLCSKVDIHSYPTFKVFYDGKEV 118
+ K + PTFK F G+ V
Sbjct: 64 IATNPWTAEKYGVQGTPTFKFFCHGRPV 91
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 5/97 (5%)
Query: 31 SEVITLTPDTFTDKVKEK-DTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXX 89
+V + DTF VK D + WC CK + +E L +
Sbjct: 18 GKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAE---EYLDVIFLKL 74
Query: 90 XCGA-SKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPR 125
C +KTL ++ I PTFK+ + V + G +
Sbjct: 75 DCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAK 111
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 5/97 (5%)
Query: 31 SEVITLTPDTFTDKVKEK-DTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXX 89
+V + DTF VK D + WC CK + +E L +
Sbjct: 6 GKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAE---EYLDVIFLKL 62
Query: 90 XCGA-SKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPR 125
C +KTL ++ I PTFK+ + V + G +
Sbjct: 63 DCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAK 99
>pdb|2E2D|C Chain C, Flexibility And Variability Of Timp Binding: X-Ray
Structure Of The Complex Between Collagenase-3MMP-13 And
Timp-2
Length = 180
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 102 DIHSYPTFKVFYDGKEVAKYQGP-RDVESLKTFVLEEAEKAATKAQLGGDKE 152
DI+ P ++ Y+ K++ ++GP +D+E + + A +GG KE
Sbjct: 34 DIYGNPIKRIQYEIKQIKMFKGPDQDIEFI--YTAPAAAVCGVSLDIGGKKE 83
>pdb|1BQQ|T Chain T, Crystal Structure Of The Mt1-Mmp--Timp-2 Complex
pdb|1BUV|T Chain T, Crystal Structure Of The Mt1-Mmp-Timp-2 Complex
Length = 184
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 102 DIHSYPTFKVFYDGKEVAKYQGP-RDVESLKTFVLEEAEKAATKAQLGGDKE 152
DI+ P ++ Y+ K++ ++GP +D+E + + A +GG KE
Sbjct: 34 DIYGNPIKRIQYEIKQIKMFKGPDQDIEFI--YTAPAAAVCGVSLDIGGKKE 83
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 6/97 (6%)
Query: 29 SKSEVITLTPDTFTDKVKE--KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXX 86
S S++I L D + + E K+ V F WC CK + L+++L +
Sbjct: 2 SMSKLIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYDAIFVKVD 61
Query: 87 XXXXCGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQG 123
++ K +I + PTF +G++V G
Sbjct: 62 VDKLEETAR----KYNISAMPTFIAIKNGEKVGDVVG 94
>pdb|3QCP|A Chain A, Qsox From Trypanosoma Brucei
Length = 470
Score = 26.9 bits (58), Expect = 4.1, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 31/96 (32%), Gaps = 7/96 (7%)
Query: 25 AMIHSKSEVITLTPDTFTDKVKEKDTA-WFVKFCVPWCKHCKNLGSLWEDLGKAMXXX-- 81
+ H S V+ L+ D F+ + W V F C C+ S + +
Sbjct: 17 GLFHLDSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHG 76
Query: 82 ----XXXXXXXXXCGASKTLCSKVDIHSYPTFKVFY 113
C + LC K DI+ P FY
Sbjct: 77 KDALQIATAAAVNCASEVDLCRKYDINFVPRLFFFY 112
>pdb|2DJ0|A Chain A, The Solution Structure Of The Thioredoxin Domain Of
Human Thioredoxin-Related Transmembrane Protein 2
Length = 137
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 46 KEKDTAWFVKFCVPWCKHCKNLGSLWEDL 74
++K W V+F W C++ ++ DL
Sbjct: 23 RDKRVTWIVEFFANWSNDCQSFAPIYADL 51
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 40/117 (34%), Gaps = 16/117 (13%)
Query: 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPWC--------------KHCKNLGSLWEDLGKA 77
++I LT D+F V + D A V F WC CK + + +++ A
Sbjct: 4 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEI--A 61
Query: 78 MXXXXXXXXXXXXCGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFV 134
+ K I PT +F +G+ A G LK F+
Sbjct: 62 DEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 118
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 35/100 (35%), Gaps = 3/100 (3%)
Query: 39 DTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXCGASKTLC 98
D K KE+ V F WC CK + L+E L A +
Sbjct: 14 DAQLAKGKEEHKPIVVAFTATWCGPCKMIAPLFETLSN--DYAGKVIFLKVDVDAVAAVA 71
Query: 99 SKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFVLEEA 138
I + PTF V+ DG + G + LK V + A
Sbjct: 72 EAAGITAMPTFHVYKDGVKADDLVGASQ-DKLKALVAKHA 110
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 34/95 (35%), Gaps = 3/95 (3%)
Query: 44 KVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXXCGASKTLCSKVDI 103
K KE+ V F WC CK + L+E L A + I
Sbjct: 19 KGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVD--AVAAVAEAAGI 76
Query: 104 HSYPTFKVFYDGKEVAKYQGPRDVESLKTFVLEEA 138
+ PTF V+ DG + G + LK V + A
Sbjct: 77 TAMPTFHVYKDGVKADDLVGASQ-DKLKALVAKHA 110
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 8/98 (8%)
Query: 28 HSKSEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXX 87
H+K E DT K+ + F WC C+ + ++ + K
Sbjct: 12 HTKQEF-----DTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKVD 66
Query: 88 XXXCGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPR 125
K + ++ + PTF DG++V G R
Sbjct: 67 VDEL---KDVAEAYNVEAMPTFLFIKDGEKVDSVVGGR 101
>pdb|2DWU|A Chain A, Crystal Structure Of Glutamate Racemase Isoform Race1 From
Bacillus Anthracis
pdb|2DWU|B Chain B, Crystal Structure Of Glutamate Racemase Isoform Race1 From
Bacillus Anthracis
pdb|2DWU|C Chain C, Crystal Structure Of Glutamate Racemase Isoform Race1 From
Bacillus Anthracis
Length = 276
Score = 25.8 bits (55), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 96 TLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFVLEEAE 139
T+ S++ I P + Y G GPR VE +++FV E E
Sbjct: 21 TVASEI-IRQLPKESICYIGDNERCPYGPRSVEEVQSFVFEMVE 63
>pdb|1GXD|C Chain C, Prommp-2TIMP-2 Complex
pdb|1GXD|D Chain D, Prommp-2TIMP-2 Complex
pdb|1BR9|A Chain A, Human Tissue Inhibitor Of Metalloproteinase-2
Length = 194
Score = 25.8 bits (55), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 102 DIHSYPTFKVFYDGKEVAKYQGP-RDVESLKTFVLEEAEKAATKAQLGGDKE 152
DI+ P ++ Y+ K++ ++GP +D+E + + + +GG KE
Sbjct: 34 DIYGNPIKRIQYEIKQIKMFKGPEKDIEFI--YTAPSSAVCGVSLDVGGKKE 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,726,565
Number of Sequences: 62578
Number of extensions: 119025
Number of successful extensions: 423
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 312
Number of HSP's gapped (non-prelim): 111
length of query: 153
length of database: 14,973,337
effective HSP length: 90
effective length of query: 63
effective length of database: 9,341,317
effective search space: 588502971
effective search space used: 588502971
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)