Query 031790
Match_columns 153
No_of_seqs 145 out of 1815
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 05:23:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031790.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031790hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0910 Thioredoxin-like prote 100.0 6.8E-28 1.5E-32 154.4 10.8 106 32-139 44-149 (150)
2 cd03006 PDI_a_EFP1_N PDIa fami 99.9 5.6E-27 1.2E-31 146.9 11.7 106 26-133 4-112 (113)
3 PF00085 Thioredoxin: Thioredo 99.9 3.5E-26 7.6E-31 141.5 14.2 103 33-137 1-103 (103)
4 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 2.8E-26 6E-31 142.5 10.8 101 32-134 2-104 (104)
5 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 3.5E-26 7.6E-31 141.4 11.2 99 32-133 2-100 (101)
6 cd03065 PDI_b_Calsequestrin_N 99.9 1.9E-25 4.1E-30 141.0 11.2 108 30-138 8-119 (120)
7 PTZ00443 Thioredoxin domain-co 99.9 6.6E-25 1.4E-29 152.2 14.7 110 30-141 29-142 (224)
8 COG3118 Thioredoxin domain-con 99.9 1.1E-25 2.4E-30 158.3 10.2 110 29-140 21-132 (304)
9 PRK09381 trxA thioredoxin; Pro 99.9 1.2E-24 2.5E-29 136.3 13.4 107 30-138 2-108 (109)
10 cd02996 PDI_a_ERp44 PDIa famil 99.9 4.7E-25 1E-29 137.9 11.3 102 32-134 2-108 (108)
11 cd02956 ybbN ybbN protein fami 99.9 1.3E-24 2.9E-29 133.1 11.4 95 39-135 1-96 (96)
12 cd02954 DIM1 Dim1 family; Dim1 99.9 5.7E-25 1.2E-29 136.9 9.8 87 38-126 2-89 (114)
13 PHA02278 thioredoxin-like prot 99.9 1.4E-24 2.9E-29 134.1 11.3 93 38-133 4-100 (103)
14 cd02963 TRX_DnaJ TRX domain, D 99.9 2E-24 4.2E-29 135.7 11.0 102 34-136 7-110 (111)
15 cd03002 PDI_a_MPD1_like PDI fa 99.9 1.9E-24 4.2E-29 135.2 10.8 101 32-134 1-108 (109)
16 cd02962 TMX2 TMX2 family; comp 99.9 9.1E-24 2E-28 138.6 13.4 96 27-123 24-126 (152)
17 cd02994 PDI_a_TMX PDIa family, 99.9 6.5E-24 1.4E-28 131.2 11.9 99 32-135 2-100 (101)
18 cd03005 PDI_a_ERp46 PDIa famil 99.9 6E-24 1.3E-28 131.4 11.1 100 33-134 2-102 (102)
19 PRK10996 thioredoxin 2; Provis 99.9 2.4E-23 5.1E-28 135.6 13.1 105 30-137 34-138 (139)
20 cd02985 TRX_CDSP32 TRX family, 99.9 2.5E-23 5.5E-28 129.0 11.4 95 37-135 2-100 (103)
21 cd03001 PDI_a_P5 PDIa family, 99.9 2.7E-23 5.9E-28 128.7 11.6 100 33-134 2-102 (103)
22 cd02995 PDI_a_PDI_a'_C PDIa fa 99.9 2.2E-23 4.8E-28 129.2 11.1 102 32-134 1-104 (104)
23 TIGR01126 pdi_dom protein disu 99.9 2.7E-23 5.8E-28 128.3 10.3 101 36-137 1-101 (102)
24 cd02999 PDI_a_ERp44_like PDIa 99.9 2.8E-23 6E-28 128.0 10.0 90 41-134 9-100 (100)
25 cd02997 PDI_a_PDIR PDIa family 99.9 6.1E-23 1.3E-27 127.2 11.4 101 33-134 2-104 (104)
26 cd02998 PDI_a_ERp38 PDIa famil 99.9 5.3E-23 1.1E-27 127.6 10.9 102 33-134 2-105 (105)
27 PLN00410 U5 snRNP protein, DIM 99.9 1.2E-22 2.5E-27 131.1 12.4 104 37-142 10-124 (142)
28 cd02957 Phd_like Phosducin (Ph 99.9 2E-23 4.3E-28 131.5 8.7 93 30-126 3-97 (113)
29 KOG0907 Thioredoxin [Posttrans 99.9 5.7E-23 1.2E-27 127.0 10.4 88 45-136 17-104 (106)
30 TIGR01068 thioredoxin thioredo 99.9 1E-22 2.2E-27 125.4 11.4 100 36-137 1-100 (101)
31 cd02948 TRX_NDPK TRX domain, T 99.9 1.3E-22 2.9E-27 125.5 11.9 96 37-136 6-101 (102)
32 cd02965 HyaE HyaE family; HyaE 99.9 2E-22 4.4E-27 124.7 11.1 99 30-131 9-109 (111)
33 cd02989 Phd_like_TxnDC9 Phosdu 99.9 5.6E-22 1.2E-26 124.7 12.5 92 30-125 3-95 (113)
34 cd02993 PDI_a_APS_reductase PD 99.9 3.5E-22 7.7E-27 125.1 10.9 102 32-134 2-109 (109)
35 PTZ00102 disulphide isomerase; 99.9 4.4E-22 9.5E-27 152.9 13.4 110 31-142 32-142 (477)
36 KOG0190 Protein disulfide isom 99.9 1.5E-22 3.3E-27 152.3 9.5 113 29-142 23-136 (493)
37 cd02949 TRX_NTR TRX domain, no 99.9 1.3E-21 2.8E-26 120.1 11.4 93 41-135 5-97 (97)
38 cd02984 TRX_PICOT TRX domain, 99.9 1.2E-21 2.7E-26 120.0 10.9 94 38-134 2-96 (97)
39 cd02961 PDI_a_family Protein D 99.9 9.4E-22 2E-26 120.7 9.5 99 35-134 2-101 (101)
40 cd02987 Phd_like_Phd Phosducin 99.9 4.2E-21 9.1E-26 129.2 12.4 103 29-135 60-172 (175)
41 cd03000 PDI_a_TMX3 PDIa family 99.9 2.9E-21 6.3E-26 119.9 10.8 96 39-137 7-103 (104)
42 PTZ00102 disulphide isomerase; 99.9 2.7E-21 5.9E-26 148.5 12.6 111 30-140 356-467 (477)
43 cd02986 DLP Dim1 family, Dim1- 99.9 4.5E-21 9.7E-26 118.7 10.1 96 39-136 3-109 (114)
44 PTZ00051 thioredoxin; Provisio 99.9 7.3E-21 1.6E-25 116.8 11.0 95 33-132 2-97 (98)
45 cd02953 DsbDgamma DsbD gamma f 99.9 2.3E-21 5.1E-26 120.3 8.7 94 39-135 2-104 (104)
46 cd02950 TxlA TRX-like protein 99.9 1E-20 2.2E-25 123.5 12.0 101 38-141 10-113 (142)
47 cd03007 PDI_a_ERp29_N PDIa fam 99.8 1.8E-20 3.9E-25 117.1 9.4 99 32-137 2-115 (116)
48 KOG0908 Thioredoxin-like prote 99.8 1.7E-20 3.7E-25 128.7 10.0 109 33-145 3-113 (288)
49 cd02992 PDI_a_QSOX PDIa family 99.8 2.2E-20 4.7E-25 117.7 9.8 85 32-116 2-89 (114)
50 TIGR01130 ER_PDI_fam protein d 99.8 4.1E-20 8.8E-25 141.3 12.1 110 32-142 2-113 (462)
51 cd02975 PfPDO_like_N Pyrococcu 99.8 7.4E-20 1.6E-24 115.1 10.7 95 41-139 15-111 (113)
52 cd02988 Phd_like_VIAF Phosduci 99.8 8.4E-20 1.8E-24 124.4 11.4 102 28-135 79-189 (192)
53 KOG0190 Protein disulfide isom 99.8 1.7E-20 3.8E-25 141.3 8.6 107 31-139 366-474 (493)
54 TIGR00424 APS_reduc 5'-adenyly 99.8 9.2E-20 2E-24 137.8 12.6 107 29-136 349-461 (463)
55 cd02951 SoxW SoxW family; SoxW 99.8 1.4E-19 3.1E-24 115.8 11.4 98 40-140 5-121 (125)
56 PLN02309 5'-adenylylsulfate re 99.8 1.2E-19 2.5E-24 137.2 12.5 108 29-137 343-456 (457)
57 cd02947 TRX_family TRX family; 99.8 2.5E-19 5.3E-24 108.0 11.3 91 40-134 2-92 (93)
58 TIGR01295 PedC_BrcD bacterioci 99.8 3.4E-19 7.4E-24 113.3 11.2 99 32-135 7-121 (122)
59 KOG4277 Uncharacterized conser 99.8 3.5E-19 7.5E-24 125.7 5.1 91 48-139 42-133 (468)
60 TIGR01130 ER_PDI_fam protein d 99.8 5.1E-18 1.1E-22 129.8 11.8 109 30-140 345-456 (462)
61 PTZ00062 glutaredoxin; Provisi 99.8 6.4E-18 1.4E-22 115.7 10.6 92 37-140 5-96 (204)
62 TIGR00411 redox_disulf_1 small 99.8 1.5E-17 3.3E-22 98.7 10.0 80 52-137 2-81 (82)
63 KOG0912 Thiol-disulfide isomer 99.8 4.9E-18 1.1E-22 119.7 8.5 105 37-142 2-110 (375)
64 cd02982 PDI_b'_family Protein 99.8 1.3E-17 2.8E-22 103.2 9.3 87 49-137 12-102 (103)
65 cd02959 ERp19 Endoplasmic reti 99.7 1.1E-17 2.5E-22 105.7 7.0 93 45-139 15-114 (117)
66 cd02952 TRP14_like Human TRX-r 99.7 3.9E-17 8.4E-22 102.9 9.1 80 37-118 8-103 (119)
67 KOG0191 Thioredoxin/protein di 99.7 3.1E-17 6.7E-22 123.1 9.6 116 26-143 24-139 (383)
68 TIGR02187 GlrX_arch Glutaredox 99.7 6E-17 1.3E-21 112.7 10.3 90 51-141 21-114 (215)
69 PF13098 Thioredoxin_2: Thiore 99.7 6E-17 1.3E-21 101.6 7.4 86 47-134 3-112 (112)
70 PRK15412 thiol:disulfide inter 99.7 1.7E-15 3.6E-20 103.2 14.8 90 48-142 67-180 (185)
71 KOG1731 FAD-dependent sulfhydr 99.7 5.6E-17 1.2E-21 122.8 7.4 115 27-141 35-156 (606)
72 PRK03147 thiol-disulfide oxido 99.7 3.7E-15 7.9E-20 100.3 15.0 88 48-136 60-170 (173)
73 PRK00293 dipZ thiol:disulfide 99.7 3E-16 6.4E-21 122.7 10.2 98 38-138 460-570 (571)
74 cd02955 SSP411 TRX domain, SSP 99.7 9.4E-16 2E-20 97.5 9.8 99 38-139 5-120 (124)
75 TIGR02738 TrbB type-F conjugat 99.7 4.7E-15 1E-19 97.6 13.1 85 49-137 50-152 (153)
76 TIGR02187 GlrX_arch Glutaredox 99.7 1E-15 2.3E-20 106.5 10.4 95 35-136 119-214 (215)
77 PHA02125 thioredoxin-like prot 99.7 1.6E-15 3.4E-20 88.6 9.0 69 53-132 2-71 (75)
78 PRK14018 trifunctional thiored 99.6 6.2E-15 1.3E-19 113.1 13.8 91 47-138 54-173 (521)
79 TIGR00412 redox_disulf_2 small 99.6 3E-15 6.6E-20 87.6 8.4 73 53-134 2-75 (76)
80 KOG0191 Thioredoxin/protein di 99.6 1.5E-15 3.3E-20 114.0 9.1 112 30-141 142-255 (383)
81 TIGR00385 dsbE periplasmic pro 99.6 3.1E-14 6.7E-19 96.0 10.7 87 48-139 62-172 (173)
82 cd02958 UAS UAS family; UAS is 99.6 5.4E-14 1.2E-18 88.6 10.7 92 46-139 14-112 (114)
83 TIGR02740 TraF-like TraF-like 99.6 3.9E-14 8.5E-19 101.5 10.6 88 48-139 165-265 (271)
84 COG2143 Thioredoxin-related pr 99.6 2.9E-13 6.3E-18 87.2 12.7 94 45-140 38-151 (182)
85 cd03010 TlpA_like_DsbE TlpA-li 99.5 7.5E-14 1.6E-18 89.4 9.0 79 48-130 24-126 (127)
86 cd02973 TRX_GRX_like Thioredox 99.5 4.4E-14 9.6E-19 80.6 6.5 59 53-116 3-61 (67)
87 cd03009 TryX_like_TryX_NRX Try 99.5 9.6E-14 2.1E-18 89.4 8.7 71 48-118 17-113 (131)
88 cd03026 AhpF_NTD_C TRX-GRX-lik 99.5 1.4E-13 3E-18 82.8 8.7 76 49-131 12-87 (89)
89 PRK11509 hydrogenase-1 operon 99.5 3.5E-13 7.5E-18 85.9 10.8 110 32-143 18-129 (132)
90 cd03011 TlpA_like_ScsD_MtbDsbE 99.5 2.4E-13 5.3E-18 86.5 9.9 92 36-132 8-120 (123)
91 cd03008 TryX_like_RdCVF Trypar 99.5 1.6E-13 3.4E-18 89.6 8.9 72 48-119 24-127 (146)
92 PLN02919 haloacid dehalogenase 99.5 2.3E-13 5E-18 112.9 12.0 96 48-144 419-542 (1057)
93 cd02964 TryX_like_family Trypa 99.5 1.5E-13 3.2E-18 88.7 8.6 71 48-118 16-113 (132)
94 cd02960 AGR Anterior Gradient 99.5 1.5E-13 3.2E-18 87.5 7.9 77 45-125 19-100 (130)
95 PF13905 Thioredoxin_8: Thiore 99.5 5.5E-13 1.2E-17 81.2 9.3 68 49-116 1-94 (95)
96 KOG0914 Thioredoxin-like prote 99.5 7.5E-14 1.6E-18 94.5 5.8 95 27-122 120-222 (265)
97 cd02966 TlpA_like_family TlpA- 99.5 6.3E-13 1.4E-17 82.8 9.1 74 49-123 19-116 (116)
98 COG4232 Thiol:disulfide interc 99.5 3.6E-13 7.8E-18 103.2 9.0 104 34-137 457-567 (569)
99 KOG0913 Thiol-disulfide isomer 99.4 6.5E-14 1.4E-18 95.8 2.9 107 28-139 21-127 (248)
100 smart00594 UAS UAS domain. 99.4 3.2E-12 7E-17 81.4 9.8 96 37-134 12-121 (122)
101 PRK13728 conjugal transfer pro 99.4 9.2E-12 2E-16 83.7 10.8 84 53-140 73-173 (181)
102 cd03012 TlpA_like_DipZ_like Tl 99.4 5.7E-12 1.2E-16 80.6 9.0 76 48-124 22-125 (126)
103 cd02967 mauD Methylamine utili 99.4 6.7E-12 1.4E-16 78.8 8.5 68 49-118 21-109 (114)
104 PF08534 Redoxin: Redoxin; In 99.4 1.8E-11 3.9E-16 80.1 10.6 85 48-133 27-145 (146)
105 PF13899 Thioredoxin_7: Thiore 99.3 2.4E-12 5.3E-17 76.3 5.2 65 46-113 14-81 (82)
106 KOG1672 ATP binding protein [P 99.3 6.6E-12 1.4E-16 83.7 7.0 94 29-126 64-158 (211)
107 TIGR02661 MauD methylamine deh 99.3 1E-10 2.2E-15 79.9 12.9 86 48-137 73-178 (189)
108 PLN02399 phospholipid hydroper 99.3 3.5E-11 7.6E-16 84.4 10.3 91 48-139 98-235 (236)
109 PTZ00056 glutathione peroxidas 99.3 3.7E-11 8E-16 82.7 10.1 96 48-144 38-184 (199)
110 PF02114 Phosducin: Phosducin; 99.3 5.5E-11 1.2E-15 84.8 10.4 105 29-137 123-237 (265)
111 PLN02412 probable glutathione 99.2 1.3E-10 2.7E-15 78.0 9.9 92 48-140 28-166 (167)
112 TIGR01626 ytfJ_HI0045 conserve 99.2 2.7E-10 5.9E-15 77.0 10.4 82 48-134 58-176 (184)
113 cd02969 PRX_like1 Peroxiredoxi 99.2 8E-10 1.7E-14 74.3 10.9 94 48-142 24-156 (171)
114 COG0526 TrxA Thiol-disulfide i 99.2 2.5E-10 5.3E-15 70.9 7.8 83 49-133 32-119 (127)
115 TIGR02196 GlrX_YruB Glutaredox 99.1 4.1E-10 8.9E-15 64.9 7.5 68 53-134 2-73 (74)
116 TIGR02540 gpx7 putative glutat 99.1 1.2E-09 2.5E-14 72.3 10.0 88 49-137 22-152 (153)
117 PF01216 Calsequestrin: Calseq 99.1 1.7E-09 3.7E-14 78.3 10.8 110 31-142 34-148 (383)
118 PF13192 Thioredoxin_3: Thiore 99.1 2.1E-09 4.6E-14 62.7 8.8 72 55-135 4-76 (76)
119 cd00340 GSH_Peroxidase Glutath 99.1 7E-10 1.5E-14 73.2 7.3 83 49-133 22-151 (152)
120 cd03017 PRX_BCP Peroxiredoxin 99.1 2.1E-09 4.5E-14 69.8 8.8 85 49-134 23-139 (140)
121 PF03190 Thioredox_DsbH: Prote 99.0 1.5E-09 3.3E-14 71.6 7.7 101 38-141 27-144 (163)
122 TIGR02200 GlrX_actino Glutared 99.0 2.4E-09 5.3E-14 62.3 7.2 69 53-134 2-75 (77)
123 cd01659 TRX_superfamily Thiore 99.0 2.7E-09 5.9E-14 59.1 7.0 60 53-115 1-63 (69)
124 PTZ00256 glutathione peroxidas 99.0 6.4E-09 1.4E-13 70.7 9.9 90 49-139 40-182 (183)
125 KOG2501 Thioredoxin, nucleored 99.0 1.4E-09 3E-14 70.9 6.1 71 48-118 32-129 (157)
126 PF13728 TraF: F plasmid trans 99.0 8.9E-09 1.9E-13 71.6 9.8 80 49-132 120-212 (215)
127 cd02991 UAS_ETEA UAS family, E 99.0 1.6E-08 3.4E-13 63.7 9.7 92 46-140 14-115 (116)
128 PF00578 AhpC-TSA: AhpC/TSA fa 98.9 1.8E-08 3.8E-13 63.9 9.5 70 48-118 24-122 (124)
129 PF13848 Thioredoxin_6: Thiore 98.9 9.7E-08 2.1E-12 64.6 13.4 107 28-136 74-184 (184)
130 TIGR02180 GRX_euk Glutaredoxin 98.9 7E-09 1.5E-13 61.4 5.8 60 53-118 1-65 (84)
131 TIGR03143 AhpF_homolog putativ 98.9 3.4E-08 7.4E-13 77.8 10.9 95 32-134 459-554 (555)
132 PF06110 DUF953: Eukaryotic pr 98.9 2.5E-08 5.4E-13 62.8 8.1 77 39-117 6-101 (119)
133 cd03015 PRX_Typ2cys Peroxiredo 98.9 5.3E-08 1.1E-12 65.6 10.2 88 49-137 29-156 (173)
134 PF14595 Thioredoxin_9: Thiore 98.8 2.2E-08 4.7E-13 64.2 7.6 74 48-124 40-117 (129)
135 PRK11200 grxA glutaredoxin 1; 98.8 4.4E-08 9.6E-13 58.3 8.4 76 52-138 2-83 (85)
136 TIGR03137 AhpC peroxiredoxin. 98.8 7.7E-08 1.7E-12 65.7 10.2 87 49-136 31-154 (187)
137 PRK09437 bcp thioredoxin-depen 98.8 9.3E-08 2E-12 63.1 10.2 86 48-134 29-149 (154)
138 cd02970 PRX_like2 Peroxiredoxi 98.8 8.7E-08 1.9E-12 62.6 9.5 43 50-93 24-67 (149)
139 PRK00522 tpx lipid hydroperoxi 98.8 1.1E-07 2.4E-12 63.7 10.1 71 49-122 44-148 (167)
140 TIGR02739 TraF type-F conjugat 98.8 1.5E-07 3.3E-12 66.8 10.8 88 49-140 150-250 (256)
141 KOG3414 Component of the U4/U6 98.8 3.2E-07 7E-12 57.3 10.8 102 39-142 12-124 (142)
142 PRK10877 protein disulfide iso 98.8 4.2E-08 9.2E-13 69.1 7.9 81 48-137 106-230 (232)
143 cd03018 PRX_AhpE_like Peroxire 98.8 1.4E-07 3E-12 61.8 9.8 84 50-134 29-147 (149)
144 PRK15317 alkyl hydroperoxide r 98.8 1.2E-07 2.6E-12 74.1 10.7 102 31-139 98-199 (517)
145 cd03014 PRX_Atyp2cys Peroxired 98.8 1E-07 2.2E-12 62.1 8.8 83 49-134 26-141 (143)
146 PF07912 ERp29_N: ERp29, N-ter 98.7 7.9E-07 1.7E-11 55.6 11.8 107 30-139 3-120 (126)
147 KOG3425 Uncharacterized conser 98.7 1.5E-07 3.3E-12 58.3 7.2 74 39-114 13-104 (128)
148 TIGR02183 GRXA Glutaredoxin, G 98.7 1.6E-07 3.4E-12 56.1 7.2 74 53-137 2-81 (86)
149 PRK13703 conjugal pilus assemb 98.7 5.1E-07 1.1E-11 63.8 10.5 89 49-139 143-242 (248)
150 KOG2603 Oligosaccharyltransfer 98.6 9.3E-07 2E-11 63.5 11.5 113 28-140 37-168 (331)
151 cd02971 PRX_family Peroxiredox 98.6 3.3E-07 7.2E-12 59.3 8.6 78 48-126 21-131 (140)
152 PF02966 DIM1: Mitosis protein 98.6 4.2E-06 9.1E-11 53.0 12.9 100 39-141 9-120 (133)
153 PRK10382 alkyl hydroperoxide r 98.6 7.9E-07 1.7E-11 60.6 10.4 89 49-138 31-156 (187)
154 KOG0911 Glutaredoxin-related p 98.6 2.3E-08 5.1E-13 68.5 2.9 81 48-131 16-96 (227)
155 cd02976 NrdH NrdH-redoxin (Nrd 98.6 3E-07 6.5E-12 52.6 7.2 67 53-133 2-72 (73)
156 PRK13190 putative peroxiredoxi 98.6 6.7E-07 1.4E-11 61.8 10.1 90 49-139 27-155 (202)
157 TIGR03140 AhpF alkyl hydropero 98.6 5.8E-07 1.3E-11 70.3 10.7 99 32-137 100-198 (515)
158 PRK15000 peroxidase; Provision 98.6 9E-07 2E-11 61.0 10.3 89 48-137 33-161 (200)
159 PRK10606 btuE putative glutath 98.6 4.3E-07 9.3E-12 61.7 8.1 43 48-92 24-66 (183)
160 cd02968 SCO SCO (an acronym fo 98.6 3.2E-07 7E-12 59.5 7.0 45 48-92 21-68 (142)
161 PRK10954 periplasmic protein d 98.5 3.3E-06 7.2E-11 58.5 11.6 40 49-90 37-79 (207)
162 cd03020 DsbA_DsbC_DsbG DsbA fa 98.5 6E-07 1.3E-11 61.7 7.8 77 48-134 76-197 (197)
163 PF00462 Glutaredoxin: Glutare 98.5 6.4E-07 1.4E-11 49.6 6.5 55 53-117 1-59 (60)
164 PRK11657 dsbG disulfide isomer 98.5 1.5E-06 3.2E-11 62.0 9.5 83 49-135 117-249 (251)
165 TIGR02190 GlrX-dom Glutaredoxi 98.5 1.1E-06 2.4E-11 51.5 7.4 68 51-134 8-78 (79)
166 cd03072 PDI_b'_ERp44 PDIb' fam 98.5 3.1E-06 6.7E-11 52.9 9.3 102 33-139 1-109 (111)
167 cd02983 P5_C P5 family, C-term 98.5 1.1E-05 2.4E-10 51.8 11.9 114 32-148 3-125 (130)
168 PTZ00137 2-Cys peroxiredoxin; 98.4 6E-06 1.3E-10 59.0 10.7 88 49-137 98-224 (261)
169 cd03023 DsbA_Com1_like DsbA fa 98.4 5.2E-06 1.1E-10 54.3 9.3 32 48-79 4-35 (154)
170 PF11009 DUF2847: Protein of u 98.4 5.5E-06 1.2E-10 50.8 8.6 92 37-130 6-104 (105)
171 TIGR02194 GlrX_NrdH Glutaredox 98.4 2.3E-06 5E-11 49.2 6.6 66 54-132 2-70 (72)
172 cd02981 PDI_b_family Protein D 98.4 6.4E-06 1.4E-10 50.0 8.8 86 41-136 10-96 (97)
173 PF13462 Thioredoxin_4: Thiore 98.4 1.4E-05 3.1E-10 52.8 10.9 84 48-136 11-162 (162)
174 PRK13189 peroxiredoxin; Provis 98.4 7.1E-06 1.5E-10 57.5 9.8 86 51-137 38-162 (222)
175 cd03016 PRX_1cys Peroxiredoxin 98.3 6.8E-06 1.5E-10 56.8 9.4 86 51-137 28-153 (203)
176 cd03419 GRX_GRXh_1_2_like Glut 98.3 2.5E-06 5.5E-11 50.1 6.3 58 53-118 2-64 (82)
177 PF05768 DUF836: Glutaredoxin- 98.3 2.9E-06 6.4E-11 50.0 6.1 78 53-135 2-81 (81)
178 PRK13599 putative peroxiredoxi 98.3 1.2E-05 2.6E-10 56.1 9.9 86 51-137 31-155 (215)
179 cd03029 GRX_hybridPRX5 Glutare 98.3 1.3E-05 2.7E-10 46.0 8.4 66 53-134 3-71 (72)
180 cd03073 PDI_b'_ERp72_ERp57 PDI 98.3 1.1E-05 2.5E-10 50.3 8.5 98 35-137 3-110 (111)
181 PHA03050 glutaredoxin; Provisi 98.3 3.4E-06 7.4E-11 52.4 5.7 61 53-118 15-80 (108)
182 PRK10329 glutaredoxin-like pro 98.2 1.8E-05 3.8E-10 46.7 8.3 72 53-138 3-77 (81)
183 PRK13191 putative peroxiredoxi 98.2 1.9E-05 4.2E-10 55.0 9.9 86 51-137 36-160 (215)
184 TIGR02189 GlrX-like_plant Glut 98.2 4.5E-06 9.8E-11 51.1 5.9 56 53-118 10-72 (99)
185 cd03019 DsbA_DsbA DsbA family, 98.2 2.2E-05 4.8E-10 52.7 9.6 38 48-87 14-51 (178)
186 TIGR03143 AhpF_homolog putativ 98.2 1.3E-05 2.9E-10 63.3 9.5 104 41-147 357-463 (555)
187 KOG3170 Conserved phosducin-li 98.2 2.2E-05 4.7E-10 53.2 8.9 105 27-137 87-200 (240)
188 cd02066 GRX_family Glutaredoxi 98.2 8.2E-06 1.8E-10 46.2 6.1 57 53-119 2-62 (72)
189 PTZ00253 tryparedoxin peroxida 98.2 3.3E-05 7.1E-10 53.2 10.0 88 49-137 36-163 (199)
190 cd03418 GRX_GRXb_1_3_like Glut 98.2 1.3E-05 2.8E-10 46.2 6.7 56 53-118 2-62 (75)
191 cd03027 GRX_DEP Glutaredoxin ( 98.2 6.2E-06 1.3E-10 47.5 5.3 56 53-118 3-62 (73)
192 PF07449 HyaE: Hydrogenase-1 e 98.1 1.1E-05 2.3E-10 49.8 5.9 94 29-126 7-103 (107)
193 TIGR02181 GRX_bact Glutaredoxi 98.1 8.3E-06 1.8E-10 47.7 5.2 56 53-118 1-60 (79)
194 COG0695 GrxC Glutaredoxin and 98.0 2.4E-05 5.3E-10 45.9 5.4 54 53-116 3-62 (80)
195 cd02972 DsbA_family DsbA famil 97.9 4.4E-05 9.6E-10 45.7 5.8 59 53-113 1-91 (98)
196 TIGR00365 monothiol glutaredox 97.9 0.0001 2.2E-09 45.0 6.9 50 59-118 25-78 (97)
197 KOG3171 Conserved phosducin-li 97.9 9.8E-05 2.1E-09 50.7 7.2 105 29-137 136-250 (273)
198 PRK10638 glutaredoxin 3; Provi 97.8 0.00015 3.2E-09 42.8 6.2 56 53-118 4-63 (83)
199 cd03028 GRX_PICOT_like Glutare 97.7 0.00022 4.8E-09 42.8 6.3 50 59-118 21-74 (90)
200 KOG1752 Glutaredoxin and relat 97.7 0.00045 9.8E-09 42.5 7.3 61 49-118 13-78 (104)
201 cd03067 PDI_b_PDIR_N PDIb fami 97.6 0.00062 1.4E-08 41.2 7.5 93 39-135 10-109 (112)
202 PF13848 Thioredoxin_6: Thiore 97.5 0.00094 2E-08 44.9 8.1 70 66-141 7-78 (184)
203 PRK12759 bifunctional gluaredo 97.5 0.00034 7.5E-09 53.4 6.5 56 53-118 4-71 (410)
204 PRK10824 glutaredoxin-4; Provi 97.5 0.00038 8.3E-09 43.7 5.4 51 59-119 28-82 (115)
205 COG1331 Highly conserved prote 97.5 0.00064 1.4E-08 54.1 7.5 83 33-118 28-122 (667)
206 cd03066 PDI_b_Calsequestrin_mi 97.1 0.018 3.8E-07 35.3 9.8 94 34-137 3-100 (102)
207 PTZ00062 glutaredoxin; Provisi 97.0 0.0031 6.8E-08 43.6 6.3 50 59-118 126-179 (204)
208 PF00837 T4_deiodinase: Iodoth 97.0 0.012 2.6E-07 41.5 9.0 60 27-87 78-140 (237)
209 PF13743 Thioredoxin_5: Thiore 96.9 0.0067 1.5E-07 41.0 7.0 26 55-80 2-27 (176)
210 cd03069 PDI_b_ERp57 PDIb famil 96.8 0.03 6.4E-07 34.4 9.1 89 38-137 8-103 (104)
211 COG1225 Bcp Peroxiredoxin [Pos 96.7 0.045 9.7E-07 36.3 9.6 88 48-136 29-154 (157)
212 PF01323 DSBA: DSBA-like thior 96.7 0.039 8.5E-07 37.4 9.8 28 53-80 2-29 (193)
213 COG1651 DsbG Protein-disulfide 96.6 0.034 7.3E-07 39.4 9.4 36 98-138 208-243 (244)
214 PRK15317 alkyl hydroperoxide r 96.6 0.021 4.4E-07 45.1 8.8 83 49-145 18-101 (517)
215 cd02978 KaiB_like KaiB-like fa 96.4 0.022 4.7E-07 32.6 5.8 59 53-112 4-62 (72)
216 TIGR03140 AhpF alkyl hydropero 96.4 0.037 8.1E-07 43.7 9.1 84 49-145 18-102 (515)
217 cd03031 GRX_GRX_like Glutaredo 96.3 0.027 5.8E-07 37.0 6.6 56 53-118 2-71 (147)
218 cd02974 AhpF_NTD_N Alkyl hydro 96.2 0.12 2.6E-06 31.2 9.1 73 49-136 18-92 (94)
219 cd03074 PDI_b'_Calsequestrin_C 96.1 0.17 3.6E-06 31.3 10.2 104 34-137 4-119 (120)
220 COG3019 Predicted metal-bindin 96.0 0.082 1.8E-06 34.1 7.4 73 53-138 28-104 (149)
221 PRK09301 circadian clock prote 95.9 0.062 1.3E-06 32.9 6.2 81 49-131 5-86 (103)
222 TIGR02654 circ_KaiB circadian 95.9 0.072 1.6E-06 31.6 6.3 74 51-126 4-77 (87)
223 COG4545 Glutaredoxin-related p 95.5 0.032 7E-07 31.9 3.9 56 54-118 5-76 (85)
224 KOG2507 Ubiquitin regulatory p 95.3 0.23 5.1E-06 37.9 8.8 92 47-139 16-112 (506)
225 PHA03075 glutaredoxin-like pro 95.1 0.048 1E-06 34.0 4.0 30 50-79 2-31 (123)
226 KOG2640 Thioredoxin [Function 95.1 0.0084 1.8E-07 43.6 0.7 88 49-140 76-164 (319)
227 cd02977 ArsC_family Arsenate R 95.1 0.031 6.6E-07 34.3 3.2 33 54-94 2-34 (105)
228 cd02990 UAS_FAF1 UAS family, F 95.0 0.59 1.3E-05 30.3 10.7 91 47-139 19-134 (136)
229 cd03013 PRX5_like Peroxiredoxi 94.7 0.072 1.6E-06 35.2 4.5 42 50-92 31-74 (155)
230 TIGR02742 TrbC_Ftype type-F co 94.7 0.16 3.4E-06 32.7 5.8 44 94-137 60-114 (130)
231 cd03040 GST_N_mPGES2 GST_N fam 94.7 0.16 3.5E-06 29.0 5.4 73 53-138 2-76 (77)
232 PF09673 TrbC_Ftype: Type-F co 94.6 0.21 4.5E-06 31.2 6.1 45 66-114 36-80 (113)
233 cd03041 GST_N_2GST_N GST_N fam 94.5 0.49 1.1E-05 27.1 7.9 70 53-136 2-75 (77)
234 cd03036 ArsC_like Arsenate Red 94.1 0.091 2E-06 32.7 3.7 34 54-95 2-35 (111)
235 TIGR01617 arsC_related transcr 94.1 0.11 2.3E-06 32.7 4.0 34 54-95 2-35 (117)
236 cd03037 GST_N_GRX2 GST_N famil 93.9 0.17 3.8E-06 28.3 4.4 68 55-135 3-70 (71)
237 PF07689 KaiB: KaiB domain; I 93.7 0.063 1.4E-06 31.6 2.2 55 56-111 3-57 (82)
238 PRK01655 spxA transcriptional 93.6 0.14 3.1E-06 32.8 4.0 33 53-93 2-34 (131)
239 cd03060 GST_N_Omega_like GST_N 93.2 0.22 4.9E-06 27.9 4.0 57 54-117 2-59 (71)
240 PF06053 DUF929: Domain of unk 92.9 2.4 5.2E-05 30.4 9.5 34 47-80 56-89 (249)
241 cd03068 PDI_b_ERp72 PDIb famil 92.8 1.4 3E-05 27.1 8.5 90 38-136 8-106 (107)
242 COG3634 AhpF Alkyl hydroperoxi 92.8 0.67 1.4E-05 35.1 6.8 100 30-136 97-196 (520)
243 COG2761 FrnE Predicted dithiol 92.7 0.2 4.3E-06 35.2 3.8 45 96-144 175-219 (225)
244 KOG2792 Putative cytochrome C 92.6 1.5 3.2E-05 31.5 8.0 92 49-140 139-277 (280)
245 COG3531 Predicted protein-disu 92.6 0.28 6.1E-06 33.7 4.3 45 95-139 164-210 (212)
246 COG1999 Uncharacterized protei 92.2 2.8 6.1E-05 29.2 13.3 92 48-139 66-205 (207)
247 PRK12559 transcriptional regul 92.2 0.32 7E-06 31.2 4.2 21 53-73 2-22 (131)
248 cd03032 ArsC_Spx Arsenate Redu 92.0 0.4 8.6E-06 30.0 4.4 34 53-94 2-35 (115)
249 cd03035 ArsC_Yffb Arsenate Red 91.9 0.2 4.3E-06 30.9 2.8 33 54-94 2-34 (105)
250 COG0386 BtuE Glutathione perox 91.7 2.7 5.8E-05 27.9 7.9 90 48-139 24-161 (162)
251 cd00570 GST_N_family Glutathio 91.2 0.41 8.9E-06 25.9 3.5 51 55-111 3-55 (71)
252 cd03051 GST_N_GTT2_like GST_N 90.6 0.58 1.3E-05 26.1 3.8 52 54-111 2-57 (74)
253 PRK13344 spxA transcriptional 90.3 0.72 1.6E-05 29.7 4.3 32 53-92 2-33 (132)
254 PF02630 SCO1-SenC: SCO1/SenC; 90.2 1.2 2.5E-05 30.1 5.5 45 48-92 51-97 (174)
255 cd03059 GST_N_SspA GST_N famil 90.0 2.1 4.6E-05 23.7 6.5 69 54-136 2-71 (73)
256 PF13417 GST_N_3: Glutathione 90.0 2.3 4.9E-05 24.0 8.8 71 55-139 1-72 (75)
257 cd03024 DsbA_FrnE DsbA family, 88.8 0.54 1.2E-05 32.0 3.1 36 95-134 165-200 (201)
258 PF13778 DUF4174: Domain of un 88.6 4.4 9.5E-05 25.5 9.2 87 48-136 9-110 (118)
259 cd03045 GST_N_Delta_Epsilon GS 87.0 1.3 2.9E-05 24.7 3.6 51 54-110 2-56 (74)
260 PF06953 ArsD: Arsenical resis 86.2 3.8 8.3E-05 26.1 5.6 57 82-141 39-105 (123)
261 PRK13730 conjugal transfer pil 85.7 1.5 3.3E-05 30.3 3.8 42 94-136 151-192 (212)
262 cd03022 DsbA_HCCA_Iso DsbA fam 85.4 1.1 2.3E-05 30.3 3.1 34 96-134 158-191 (192)
263 PF04592 SelP_N: Selenoprotein 85.1 4.1 8.9E-05 28.9 5.7 58 32-91 11-70 (238)
264 cd03055 GST_N_Omega GST_N fami 84.9 2.6 5.6E-05 24.8 4.2 53 53-111 19-72 (89)
265 cd03025 DsbA_FrnE_like DsbA fa 84.8 1.8 3.9E-05 29.2 3.9 27 53-79 3-29 (193)
266 COG5429 Uncharacterized secret 84.3 7.9 0.00017 27.6 6.8 82 50-138 42-141 (261)
267 PF01216 Calsequestrin: Calseq 83.6 17 0.00037 27.5 12.3 114 28-141 246-371 (383)
268 PF00255 GSHPx: Glutathione pe 82.5 8.2 0.00018 23.9 5.8 44 48-93 20-63 (108)
269 cd03033 ArsC_15kD Arsenate Red 82.0 2.3 5.1E-05 26.5 3.3 33 53-93 2-34 (113)
270 PF04134 DUF393: Protein of un 80.9 4.3 9.3E-05 25.0 4.3 57 56-116 2-61 (114)
271 PF11119 DUF2633: Protein of u 80.5 3.1 6.7E-05 22.7 2.9 23 1-23 1-23 (59)
272 PF06491 Disulph_isomer: Disul 77.8 16 0.00035 23.5 8.8 107 32-139 17-133 (136)
273 cd03025 DsbA_FrnE_like DsbA fa 77.7 3.4 7.3E-05 27.8 3.3 22 95-116 159-180 (193)
274 COG0821 gcpE 1-hydroxy-2-methy 77.6 8.7 0.00019 28.9 5.4 83 60-142 263-355 (361)
275 cd03030 GRX_SH3BGR Glutaredoxi 76.6 9 0.00019 23.0 4.5 60 56-118 4-71 (92)
276 KOG1651 Glutathione peroxidase 76.2 21 0.00045 24.1 6.9 44 48-92 33-76 (171)
277 KOG1422 Intracellular Cl- chan 76.2 14 0.0003 25.9 5.8 70 60-143 20-90 (221)
278 COG1393 ArsC Arsenate reductas 76.2 4.3 9.3E-05 25.6 3.2 22 53-74 3-24 (117)
279 KOG1364 Predicted ubiquitin re 76.1 7.7 0.00017 29.2 4.9 59 84-142 133-193 (356)
280 PF04551 GcpE: GcpE protein; 76.1 5.6 0.00012 30.1 4.2 78 60-137 270-358 (359)
281 PF09822 ABC_transp_aux: ABC-t 75.3 28 0.0006 25.1 11.2 73 32-105 8-88 (271)
282 PRK00366 ispG 4-hydroxy-3-meth 73.9 31 0.00067 26.2 7.5 77 59-135 272-354 (360)
283 KOG4277 Uncharacterized conser 73.7 35 0.00076 25.5 9.7 96 30-137 133-230 (468)
284 PF06764 DUF1223: Protein of u 73.4 28 0.00061 24.2 8.4 81 52-141 1-101 (202)
285 cd03056 GST_N_4 GST_N family, 72.9 7.8 0.00017 21.3 3.5 51 55-111 3-57 (73)
286 cd03034 ArsC_ArsC Arsenate Red 71.8 5.2 0.00011 24.8 2.8 33 54-94 2-34 (112)
287 TIGR00014 arsC arsenate reduct 71.3 5.3 0.00012 24.9 2.8 33 54-94 2-34 (114)
288 PF08806 Sep15_SelM: Sep15/Sel 70.1 9.1 0.0002 22.2 3.3 34 105-138 41-76 (78)
289 cd03052 GST_N_GDAP1 GST_N fami 67.0 20 0.00043 20.1 4.4 56 54-117 2-61 (73)
290 PF00352 TBP: Transcription fa 65.0 26 0.00056 20.5 5.5 32 106-139 49-80 (86)
291 COG5494 Predicted thioredoxin/ 64.7 47 0.001 23.4 6.8 74 53-136 13-86 (265)
292 KOG2244 Highly conserved prote 62.5 7.8 0.00017 31.2 2.6 98 39-139 103-220 (786)
293 PF11287 DUF3088: Protein of u 62.4 12 0.00026 23.3 3.0 74 60-136 23-105 (112)
294 TIGR03521 GldG gliding-associa 62.0 85 0.0018 25.5 10.8 60 48-107 46-116 (552)
295 PRK10853 putative reductase; P 61.1 13 0.00027 23.4 3.0 33 53-93 2-34 (118)
296 COG3411 Ferredoxin [Energy pro 60.3 21 0.00046 19.9 3.4 33 106-142 17-49 (64)
297 cd03021 DsbA_GSTK DsbA family, 59.7 11 0.00024 26.0 2.9 38 97-134 171-208 (209)
298 KOG0855 Alkyl hydroperoxide re 58.7 55 0.0012 22.2 6.8 10 48-57 89-98 (211)
299 COG4752 Uncharacterized protei 58.3 9.1 0.0002 25.3 2.0 28 37-64 121-148 (190)
300 COG3011 Predicted thiol-disulf 56.5 53 0.0012 21.4 7.4 67 48-118 5-73 (137)
301 TIGR01616 nitro_assoc nitrogen 56.4 21 0.00046 22.7 3.5 22 53-74 3-24 (126)
302 PRK10026 arsenate reductase; P 55.7 19 0.00042 23.4 3.3 22 53-74 4-25 (141)
303 PF03960 ArsC: ArsC family; I 54.6 15 0.00032 22.6 2.5 31 56-94 1-31 (110)
304 TIGR00612 ispG_gcpE 1-hydroxy- 53.8 45 0.00099 25.2 5.2 68 57-124 261-335 (346)
305 KOG0912 Thiol-disulfide isomer 52.7 77 0.0017 23.8 6.1 97 31-137 210-318 (375)
306 cd03062 TRX_Fd_Sucrase TRX-lik 52.4 28 0.00061 20.9 3.4 69 59-141 14-86 (97)
307 cd03053 GST_N_Phi GST_N family 51.9 40 0.00086 18.6 6.4 69 53-135 2-74 (76)
308 PF07351 DUF1480: Protein of u 50.5 23 0.0005 20.4 2.6 41 83-126 25-69 (80)
309 cd03049 GST_N_3 GST_N family, 48.6 45 0.00098 18.2 4.4 57 55-116 3-60 (73)
310 cd03024 DsbA_FrnE DsbA family, 48.3 35 0.00076 23.0 3.8 25 55-79 3-27 (201)
311 COG2101 SPT15 TATA-box binding 47.5 55 0.0012 22.3 4.4 33 108-142 55-87 (185)
312 PRK09481 sspA stringent starva 45.5 97 0.0021 21.2 6.9 61 48-116 6-67 (211)
313 cd03058 GST_N_Tau GST_N family 45.5 52 0.0011 18.1 6.0 68 55-136 3-72 (74)
314 COG2761 FrnE Predicted dithiol 44.8 73 0.0016 22.6 4.9 30 51-80 6-35 (225)
315 PF04908 SH3BGR: SH3-binding, 44.6 48 0.001 20.2 3.6 42 54-96 3-44 (99)
316 cd03022 DsbA_HCCA_Iso DsbA fam 44.4 36 0.00078 22.7 3.4 25 55-79 3-27 (192)
317 PF09936 Methyltrn_RNA_4: SAM- 43.7 16 0.00035 24.9 1.5 25 36-60 119-143 (185)
318 PRK13617 psbV cytochrome c-550 43.6 19 0.0004 24.3 1.8 20 58-77 67-95 (170)
319 PF09695 YtfJ_HI0045: Bacteria 41.4 1.1E+02 0.0023 20.5 5.9 29 108-136 127-156 (160)
320 PRK00394 transcription factor; 40.7 1.2E+02 0.0025 20.7 5.7 32 107-140 47-78 (179)
321 PRK10903 peptidyl-prolyl cis-t 40.6 1E+02 0.0022 21.2 5.1 37 48-89 36-73 (190)
322 COG3531 Predicted protein-disu 39.0 30 0.00064 24.1 2.2 27 52-78 3-29 (212)
323 COG4604 CeuD ABC-type enteroch 38.7 1.3E+02 0.0028 21.4 5.2 49 61-119 168-216 (252)
324 PF08599 Nbs1_C: DNA damage re 38.5 60 0.0013 18.0 2.9 37 102-143 14-51 (65)
325 cd03061 GST_N_CLIC GST_N famil 38.5 88 0.0019 18.7 7.1 69 58-140 19-88 (91)
326 PHA02151 hypothetical protein 38.2 23 0.0005 23.6 1.5 12 51-62 205-216 (217)
327 TIGR02652 conserved hypothetic 38.1 11 0.00024 24.5 0.1 13 60-72 11-23 (163)
328 PF09654 DUF2396: Protein of u 37.8 11 0.00024 24.4 0.1 13 60-72 8-20 (161)
329 PF06692 MNSV_P7B: Melon necro 37.7 69 0.0015 17.2 3.0 22 18-39 25-46 (61)
330 PLN00062 TATA-box-binding prot 37.0 1.4E+02 0.0029 20.4 5.7 31 107-139 48-78 (179)
331 PF06480 FtsH_ext: FtsH Extrac 35.4 19 0.00042 21.4 0.9 22 27-48 21-42 (110)
332 PF05988 DUF899: Bacterial pro 35.2 1.6E+02 0.0035 20.7 8.1 81 40-121 59-172 (211)
333 PRK06231 F0F1 ATP synthase sub 34.5 48 0.001 23.0 2.8 38 8-45 7-44 (205)
334 KOG2893 Zn finger protein [Gen 34.4 11 0.00023 27.0 -0.5 11 57-67 9-19 (341)
335 cd04518 TBP_archaea archaeal T 33.5 1.1E+02 0.0024 20.8 4.3 30 108-139 140-169 (174)
336 TIGR02743 TraW type-F conjugat 32.6 54 0.0012 22.9 2.7 25 93-118 173-197 (202)
337 cd03044 GST_N_EF1Bgamma GST_N 32.4 82 0.0018 17.4 3.2 68 55-135 3-73 (75)
338 PF07315 DUF1462: Protein of u 32.3 1.2E+02 0.0025 18.3 7.1 71 60-135 8-93 (93)
339 cd04516 TBP_eukaryotes eukaryo 31.9 1.2E+02 0.0026 20.5 4.3 30 108-139 49-78 (174)
340 PF11317 DUF3119: Protein of u 31.9 86 0.0019 19.8 3.3 34 104-137 81-114 (116)
341 cd00652 TBP_TLF TATA box bindi 31.4 1.2E+02 0.0026 20.5 4.2 30 108-139 141-170 (174)
342 cd04517 TLF TBP-like factors ( 30.9 1.3E+02 0.0029 20.3 4.4 32 107-140 48-79 (174)
343 PF03227 GILT: Gamma interfero 29.8 1.2E+02 0.0027 18.5 3.8 21 53-73 3-24 (108)
344 TIGR02182 GRXB Glutaredoxin, G 29.3 1.9E+02 0.0041 19.8 5.7 16 56-71 3-18 (209)
345 PF07700 HNOB: Heme NO binding 29.1 1.5E+02 0.0033 19.7 4.5 43 49-92 127-169 (171)
346 PF12617 LdpA_C: Iron-Sulfur b 28.9 2E+02 0.0043 19.8 5.3 74 62-138 18-97 (183)
347 PF00403 HMA: Heavy-metal-asso 28.2 1E+02 0.0022 16.2 4.1 31 58-94 6-36 (62)
348 PLN02402 cytidine deaminase 28.0 98 0.0021 23.1 3.5 22 50-71 93-114 (303)
349 PRK13669 hypothetical protein; 27.7 1.3E+02 0.0029 17.5 6.6 49 81-140 26-74 (78)
350 PF15379 DUF4606: Domain of un 26.8 73 0.0016 19.6 2.3 18 58-75 31-48 (104)
351 PF13073 DUF3937: Protein of u 26.5 1.2E+02 0.0025 17.0 2.8 30 27-56 32-61 (73)
352 PRK13738 conjugal transfer pil 26.3 44 0.00095 23.4 1.5 26 93-118 171-197 (209)
353 KOG0744 AAA+-type ATPase [Post 26.0 3.1E+02 0.0068 21.2 6.5 91 51-141 212-343 (423)
354 PRK13816 ribosome-binding fact 25.5 1.9E+02 0.0042 18.5 4.3 39 95-140 83-121 (131)
355 PF11238 DUF3039: Protein of u 25.0 45 0.00097 18.2 1.0 13 58-70 44-56 (58)
356 COG0266 Nei Formamidopyrimidin 25.0 18 0.0004 26.4 -0.6 8 59-66 266-273 (273)
357 PRK10387 glutaredoxin 2; Provi 24.9 2.2E+02 0.0049 19.1 8.0 55 55-116 3-57 (210)
358 TIGR03759 conj_TIGR03759 integ 24.8 2.5E+02 0.0054 19.6 5.5 35 50-90 109-143 (200)
359 KOG1371 UDP-glucose 4-epimeras 24.1 3.3E+02 0.0071 20.8 5.7 67 41-113 19-85 (343)
360 PHA02131 hypothetical protein 24.0 1.3E+02 0.0029 16.2 3.2 19 101-119 24-42 (70)
361 COG4175 ProV ABC-type proline/ 23.8 2.9E+02 0.0062 21.2 5.3 62 65-136 201-267 (386)
362 PF14097 SpoVAE: Stage V sporu 23.6 53 0.0012 22.3 1.4 33 27-59 29-62 (180)
363 KOG1731 FAD-dependent sulfhydr 23.6 1.7E+02 0.0038 24.0 4.4 69 72-142 205-273 (606)
364 PRK13620 psbV cytochrome c-550 23.3 20 0.00043 25.0 -0.6 9 58-66 112-120 (215)
365 PRK15032 trimethylamine N-oxid 23.1 1.3E+02 0.0028 23.4 3.5 21 59-79 46-66 (390)
366 COG3640 CooC CO dehydrogenase 23.0 1.8E+02 0.0038 21.1 3.9 33 75-107 21-53 (255)
367 PHA02935 Hypothetical protein; 22.6 1.9E+02 0.0042 20.3 4.0 52 86-137 46-97 (349)
368 TIGR01764 excise DNA binding d 22.5 13 0.00028 18.5 -1.4 11 125-135 38-48 (49)
369 PF07511 DUF1525: Protein of u 22.5 2.1E+02 0.0046 18.0 3.8 33 98-134 76-108 (114)
370 PRK10299 PhoPQ regulatory prot 22.4 1.3E+02 0.0028 15.6 2.8 19 1-19 1-19 (47)
371 cd03021 DsbA_GSTK DsbA family, 22.2 1.7E+02 0.0037 20.0 3.8 27 53-79 3-29 (209)
372 COG0295 Cdd Cytidine deaminase 22.2 2.3E+02 0.0051 18.4 4.1 9 60-68 87-95 (134)
373 PRK09027 cytidine deaminase; P 22.2 1.6E+02 0.0036 21.9 3.8 22 50-71 118-139 (295)
374 KOG4498 Uncharacterized conser 22.0 1.4E+02 0.003 20.7 3.2 42 48-90 50-91 (197)
375 PF08139 LPAM_1: Prokaryotic m 21.8 96 0.0021 13.8 2.0 15 9-23 7-21 (25)
376 cd03054 GST_N_Metaxin GST_N fa 21.6 1.5E+02 0.0033 16.0 6.6 58 59-136 14-71 (72)
377 cd03038 GST_N_etherase_LigE GS 21.5 1.7E+02 0.0036 16.5 4.9 67 58-137 13-82 (84)
378 KOG2990 C2C2-type Zn-finger pr 21.5 75 0.0016 23.4 1.9 22 48-69 39-63 (317)
379 PF15240 Pro-rich: Proline-ric 21.4 70 0.0015 21.9 1.6 7 18-24 9-15 (179)
380 PRK13254 cytochrome c-type bio 21.2 1.6E+02 0.0035 19.4 3.3 19 117-135 119-137 (148)
381 COG3592 Uncharacterized conser 20.8 88 0.0019 17.7 1.7 50 84-135 11-62 (74)
382 cd03042 GST_N_Zeta GST_N famil 20.5 1.6E+02 0.0034 15.8 3.3 49 56-110 4-56 (73)
No 1
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6.8e-28 Score=154.37 Aligned_cols=106 Identities=27% Similarity=0.501 Sum_probs=100.1
Q ss_pred ceEEeCcccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEE
Q 031790 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKV 111 (153)
Q Consensus 32 ~~~~l~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 111 (153)
.....+..+|++.+.+++.||+|.|||+||++|+.+.|.++++...+.+ .+.++++|.|++.+++.+|+|.++||+++
T Consensus 44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g--~~k~~kvdtD~~~ela~~Y~I~avPtvlv 121 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAG--KFKLYKVDTDEHPELAEDYEISAVPTVLV 121 (150)
T ss_pred cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcC--eEEEEEEccccccchHhhcceeeeeEEEE
Confidence 4556678899999999999999999999999999999999999999977 79999999999999999999999999999
Q ss_pred EeCCeeeeeecCCCCHHHHHHHHHHHHH
Q 031790 112 FYDGKEVAKYQGPRDVESLKTFVLEEAE 139 (153)
Q Consensus 112 ~~~g~~~~~~~g~~~~~~i~~~l~~~~~ 139 (153)
|+||+..+++.|..+.+.+.++|++.++
T Consensus 122 fknGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 122 FKNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 9999999999999999999999998764
No 2
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.95 E-value=5.6e-27 Score=146.93 Aligned_cols=106 Identities=13% Similarity=0.397 Sum_probs=96.5
Q ss_pred hhcCCCceEEeCcccHHHHh--ccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhh-hhCC
Q 031790 26 MIHSKSEVITLTPDTFTDKV--KEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLC-SKVD 102 (153)
Q Consensus 26 ~~~~~~~~~~l~~~~~~~~~--~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~-~~~~ 102 (153)
.++....+.+++.++|.+.+ .+++++++|.|||+||++|+.+.|.++++++.+++ .+.|++|||+++.++| ++|+
T Consensus 4 ~~~~~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~--~v~~~~Vd~d~~~~l~~~~~~ 81 (113)
T cd03006 4 FFSQRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD--QVLFVAINCWWPQGKCRKQKH 81 (113)
T ss_pred ccCCCCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEECCCChHHHHHhcC
Confidence 35567789999999999873 56788999999999999999999999999999976 5999999999999999 5899
Q ss_pred CCccceEEEEeCCeeeeeecCCCCHHHHHHH
Q 031790 103 IHSYPTFKVFYDGKEVAKYQGPRDVESLKTF 133 (153)
Q Consensus 103 v~~~Pt~~~~~~g~~~~~~~g~~~~~~i~~~ 133 (153)
|.++||+.+|++|+...+|.|..+.+.|..|
T Consensus 82 I~~~PTl~lf~~g~~~~~y~G~~~~~~i~~~ 112 (113)
T cd03006 82 FFYFPVIHLYYRSRGPIEYKGPMRAPYMEKF 112 (113)
T ss_pred CcccCEEEEEECCccceEEeCCCCHHHHHhh
Confidence 9999999999999888899999999999876
No 3
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.95 E-value=3.5e-26 Score=141.48 Aligned_cols=103 Identities=39% Similarity=0.763 Sum_probs=97.8
Q ss_pred eEEeCcccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEE
Q 031790 33 VITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVF 112 (153)
Q Consensus 33 ~~~l~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 112 (153)
+..++.++|++.+.+++++++|+||++||++|+.+.|.++++++.+++ ++.|+.+|+++++.++++|+|.++|++++|
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~ 78 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD--NVKFAKVDCDENKELCKKYGVKSVPTIIFF 78 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTSHHHHHHTTCSSSSEEEEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccccc--ccccchhhhhccchhhhccCCCCCCEEEEE
Confidence 467899999999987789999999999999999999999999999986 799999999999999999999999999999
Q ss_pred eCCeeeeeecCCCCHHHHHHHHHHH
Q 031790 113 YDGKEVAKYQGPRDVESLKTFVLEE 137 (153)
Q Consensus 113 ~~g~~~~~~~g~~~~~~i~~~l~~~ 137 (153)
++|+...++.|..+.++|.+||+++
T Consensus 79 ~~g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 79 KNGKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp ETTEEEEEEESSSSHHHHHHHHHHH
T ss_pred ECCcEEEEEECCCCHHHHHHHHHcC
Confidence 9999999999999999999999875
No 4
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.94 E-value=2.8e-26 Score=142.54 Aligned_cols=101 Identities=33% Similarity=0.774 Sum_probs=92.9
Q ss_pred ceEEeCcccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEE
Q 031790 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKV 111 (153)
Q Consensus 32 ~~~~l~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 111 (153)
.+.+++.++|++.+.+++++++|.||++||++|+.+.|.++++++.+.+ .+.|+++|++++++++++++|.++||+++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 79 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKG--KVKVGSVDCQKYESLCQQANIRAYPTIRL 79 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CcEEEEEECCchHHHHHHcCCCcccEEEE
Confidence 4678899999999887788999999999999999999999999999865 69999999999999999999999999999
Q ss_pred EeCC-eeeeeecCCCC-HHHHHHHH
Q 031790 112 FYDG-KEVAKYQGPRD-VESLKTFV 134 (153)
Q Consensus 112 ~~~g-~~~~~~~g~~~-~~~i~~~l 134 (153)
|++| +.+.++.|..+ .+++.+||
T Consensus 80 ~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 80 YPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EcCCCCCceEccCCCCCHHHHHhhC
Confidence 9987 88899999987 99988875
No 5
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.94 E-value=3.5e-26 Score=141.38 Aligned_cols=99 Identities=39% Similarity=0.861 Sum_probs=91.6
Q ss_pred ceEEeCcccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEE
Q 031790 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKV 111 (153)
Q Consensus 32 ~~~~l~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 111 (153)
.+.+++.++|++.+. ++++++|.||++||++|+.+.|.++++++.+++ ++.|++|||++++.++++++|.++||+++
T Consensus 2 ~~~~l~~~~f~~~v~-~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 78 (101)
T cd03003 2 EIVTLDRGDFDAAVN-SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG--VIRIGAVNCGDDRMLCRSQGVNSYPSLYV 78 (101)
T ss_pred CeEEcCHhhHHHHhc-CCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC--ceEEEEEeCCccHHHHHHcCCCccCEEEE
Confidence 567889999999885 458899999999999999999999999999976 69999999999999999999999999999
Q ss_pred EeCCeeeeeecCCCCHHHHHHH
Q 031790 112 FYDGKEVAKYQGPRDVESLKTF 133 (153)
Q Consensus 112 ~~~g~~~~~~~g~~~~~~i~~~ 133 (153)
|++|+.+.++.|..+.+++.+|
T Consensus 79 ~~~g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 79 FPSGMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred EcCCCCcccCCCCCCHHHHHhh
Confidence 9999988899999999988876
No 6
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.93 E-value=1.9e-25 Score=140.95 Aligned_cols=108 Identities=21% Similarity=0.303 Sum_probs=97.1
Q ss_pred CCceEEeCcccHHHHhccCCccEEEEEEcCCChH--HH--hHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCc
Q 031790 30 KSEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKH--CK--NLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHS 105 (153)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~~~~vlv~f~~~~C~~--C~--~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~ 105 (153)
...+..++.++|++.+.+++.++++.||++||++ |+ .+.|.+++++..+-...++.|++||++++++++++|+|.+
T Consensus 8 ~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~ 87 (120)
T cd03065 8 KDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDE 87 (120)
T ss_pred CcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCcc
Confidence 4568889999999999999999999999999976 99 8889999999888222379999999999999999999999
Q ss_pred cceEEEEeCCeeeeeecCCCCHHHHHHHHHHHH
Q 031790 106 YPTFKVFYDGKEVAKYQGPRDVESLKTFVLEEA 138 (153)
Q Consensus 106 ~Pt~~~~~~g~~~~~~~g~~~~~~i~~~l~~~~ 138 (153)
+||+++|++|+.+. +.|..+.+.+.+||++..
T Consensus 88 iPTl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 88 EDSIYVFKDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred ccEEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 99999999999876 999999999999998754
No 7
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.93 E-value=6.6e-25 Score=152.19 Aligned_cols=110 Identities=33% Similarity=0.713 Sum_probs=99.6
Q ss_pred CCceEEeCcccHHHHhccC----CccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCc
Q 031790 30 KSEVITLTPDTFTDKVKEK----DTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHS 105 (153)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~----~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~ 105 (153)
...+.++++++|++.+..+ +++++|.||++||++|+.+.|.++++++.+++ .+.|+.+|++++++++++|+|.+
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~--~v~~~~VD~~~~~~l~~~~~I~~ 106 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG--QVNVADLDATRALNLAKRFAIKG 106 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC--CeEEEEecCcccHHHHHHcCCCc
Confidence 3568999999999988542 57899999999999999999999999999986 69999999999999999999999
Q ss_pred cceEEEEeCCeeeeeecCCCCHHHHHHHHHHHHHhH
Q 031790 106 YPTFKVFYDGKEVAKYQGPRDVESLKTFVLEEAEKA 141 (153)
Q Consensus 106 ~Pt~~~~~~g~~~~~~~g~~~~~~i~~~l~~~~~~~ 141 (153)
+||+++|++|+.+.++.|..+.+++.+|+.+.....
T Consensus 107 ~PTl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~~~ 142 (224)
T PTZ00443 107 YPTLLLFDKGKMYQYEGGDRSTEKLAAFALGDFKKA 142 (224)
T ss_pred CCEEEEEECCEEEEeeCCCCCHHHHHHHHHHHHHhh
Confidence 999999999998888889899999999998887544
No 8
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.1e-25 Score=158.30 Aligned_cols=110 Identities=25% Similarity=0.554 Sum_probs=103.0
Q ss_pred CCCceEEeCcccHHHHhcc--CCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCcc
Q 031790 29 SKSEVITLTPDTFTDKVKE--KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSY 106 (153)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~--~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~ 106 (153)
....+.++|+.+|.+.+.+ ..+||+|+||+|||++|+.+.|.+++++..+++ .+.+++||||+++.++..|+|+++
T Consensus 21 ~a~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G--~f~LakvN~D~~p~vAaqfgiqsI 98 (304)
T COG3118 21 AAPGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG--KFKLAKVNCDAEPMVAAQFGVQSI 98 (304)
T ss_pred ccccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC--ceEEEEecCCcchhHHHHhCcCcC
Confidence 3445999999999998854 466999999999999999999999999999998 899999999999999999999999
Q ss_pred ceEEEEeCCeeeeeecCCCCHHHHHHHHHHHHHh
Q 031790 107 PTFKVFYDGKEVAKYQGPRDVESLKTFVLEEAEK 140 (153)
Q Consensus 107 Pt~~~~~~g~~~~~~~g~~~~~~i~~~l~~~~~~ 140 (153)
|+++.|++|+.+..|.|..+++.+++||++++..
T Consensus 99 PtV~af~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 99 PTVYAFKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred CeEEEeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 9999999999999999999999999999999887
No 9
>PRK09381 trxA thioredoxin; Provisional
Probab=99.93 E-value=1.2e-24 Score=136.29 Aligned_cols=107 Identities=25% Similarity=0.501 Sum_probs=99.0
Q ss_pred CCceEEeCcccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceE
Q 031790 30 KSEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTF 109 (153)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 109 (153)
++.+.+++.++|.+.+.+.+++++++||++||++|+.+.|.++++++.+.+ ++.++.+|++.++.++++|++.++|++
T Consensus 2 ~~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 79 (109)
T PRK09381 2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAPKYGIRGIPTL 79 (109)
T ss_pred CCcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC--CcEEEEEECCCChhHHHhCCCCcCCEE
Confidence 467888999999988777788999999999999999999999999999876 699999999999999999999999999
Q ss_pred EEEeCCeeeeeecCCCCHHHHHHHHHHHH
Q 031790 110 KVFYDGKEVAKYQGPRDVESLKTFVLEEA 138 (153)
Q Consensus 110 ~~~~~g~~~~~~~g~~~~~~i~~~l~~~~ 138 (153)
++|++|+.+.++.|..+.+++.++|...+
T Consensus 80 ~~~~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 80 LLFKNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EEEeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 99999999999999999999999998764
No 10
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.93 E-value=4.7e-25 Score=137.91 Aligned_cols=102 Identities=28% Similarity=0.642 Sum_probs=90.4
Q ss_pred ceEEeCcccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCC----CCeEEEEeeCCCchhhhhhCCCCccc
Q 031790 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGD----DEIEVGEVDCGASKTLCSKVDIHSYP 107 (153)
Q Consensus 32 ~~~~l~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~----~~~~~~~vd~~~~~~~~~~~~v~~~P 107 (153)
.+.+++.++|++.+ +.+++++|.||++||++|+.+.|.++++++.+++. .++.|+++||+++++++++|+|+++|
T Consensus 2 ~v~~l~~~~f~~~i-~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P 80 (108)
T cd02996 2 EIVSLTSGNIDDIL-QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYP 80 (108)
T ss_pred ceEEcCHhhHHHHH-hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCC
Confidence 56788999999988 45678999999999999999999999999876431 25999999999999999999999999
Q ss_pred eEEEEeCCe-eeeeecCCCCHHHHHHHH
Q 031790 108 TFKVFYDGK-EVAKYQGPRDVESLKTFV 134 (153)
Q Consensus 108 t~~~~~~g~-~~~~~~g~~~~~~i~~~l 134 (153)
++++|++|+ ....+.|..+.+++.+||
T Consensus 81 tl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 81 TLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 999999998 458889999999998875
No 11
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.92 E-value=1.3e-24 Score=133.05 Aligned_cols=95 Identities=24% Similarity=0.471 Sum_probs=86.9
Q ss_pred ccHHHHhccC-CccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEeCCee
Q 031790 39 DTFTDKVKEK-DTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYDGKE 117 (153)
Q Consensus 39 ~~~~~~~~~~-~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 117 (153)
++|++.+.++ +++++|+||++||++|+.+.|.++++++.+++ .+.++.+|+++++.++++|+|.++|++++|++|+.
T Consensus 1 ~~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 1 QNFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG--QFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred CChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC--cEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEE
Confidence 3677788544 78999999999999999999999999999876 69999999999999999999999999999999999
Q ss_pred eeeecCCCCHHHHHHHHH
Q 031790 118 VAKYQGPRDVESLKTFVL 135 (153)
Q Consensus 118 ~~~~~g~~~~~~i~~~l~ 135 (153)
+.++.|..+.+++.++|+
T Consensus 79 ~~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 79 VDGFQGAQPEEQLRQMLD 96 (96)
T ss_pred eeeecCCCCHHHHHHHhC
Confidence 999999999999998873
No 12
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.92 E-value=5.7e-25 Score=136.92 Aligned_cols=87 Identities=11% Similarity=0.219 Sum_probs=78.3
Q ss_pred cccHHHHhcc-CCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEeCCe
Q 031790 38 PDTFTDKVKE-KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYDGK 116 (153)
Q Consensus 38 ~~~~~~~~~~-~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 116 (153)
.++|++.+.. .+++++|.|||+||++|+.|.|.++++++.+++ .+.|++||++++++++++|+|.++||+++|++|+
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~--~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~ 79 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN--FAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNK 79 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccC--ceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCE
Confidence 3567777764 678899999999999999999999999999876 5899999999999999999999999999999999
Q ss_pred eeeeecCCCC
Q 031790 117 EVAKYQGPRD 126 (153)
Q Consensus 117 ~~~~~~g~~~ 126 (153)
.+.+..|..+
T Consensus 80 ~v~~~~G~~~ 89 (114)
T cd02954 80 HMKIDLGTGN 89 (114)
T ss_pred EEEEEcCCCC
Confidence 9998888543
No 13
>PHA02278 thioredoxin-like protein
Probab=99.92 E-value=1.4e-24 Score=134.07 Aligned_cols=93 Identities=17% Similarity=0.219 Sum_probs=81.6
Q ss_pred cccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCc----hhhhhhCCCCccceEEEEe
Q 031790 38 PDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGAS----KTLCSKVDIHSYPTFKVFY 113 (153)
Q Consensus 38 ~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~----~~~~~~~~v~~~Pt~~~~~ 113 (153)
.++|.+.+ +.+++++|+|||+||++|+.+.|.++++++.+.. +..|+.+|++.+ +.++++|+|.++||+++|+
T Consensus 4 ~~~~~~~i-~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~--~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk 80 (103)
T PHA02278 4 LVDLNTAI-RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDI--KKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYK 80 (103)
T ss_pred HHHHHHHH-hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC--CceEEEEECCccccccHHHHHHCCCccccEEEEEE
Confidence 46677777 4678899999999999999999999999887544 467899999875 6899999999999999999
Q ss_pred CCeeeeeecCCCCHHHHHHH
Q 031790 114 DGKEVAKYQGPRDVESLKTF 133 (153)
Q Consensus 114 ~g~~~~~~~g~~~~~~i~~~ 133 (153)
+|+.+.+..|..+.+.+.++
T Consensus 81 ~G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 81 DGQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred CCEEEEEEeCCCCHHHHHhh
Confidence 99999999998888888765
No 14
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.92 E-value=2e-24 Score=135.67 Aligned_cols=102 Identities=18% Similarity=0.416 Sum_probs=90.9
Q ss_pred EEeCcccHHHHhc--cCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEE
Q 031790 34 ITLTPDTFTDKVK--EKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKV 111 (153)
Q Consensus 34 ~~l~~~~~~~~~~--~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 111 (153)
..++.++|.+.+. ..+++++|.||++||++|+.+.|.++++++.+++ .++.+++||+++++.++++++|.++||+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~-~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i 85 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEP-LGVGIATVNAGHERRLARKLGAHSVPAIVG 85 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHh-cCceEEEEeccccHHHHHHcCCccCCEEEE
Confidence 3457788886653 3578999999999999999999999999999975 259999999999999999999999999999
Q ss_pred EeCCeeeeeecCCCCHHHHHHHHHH
Q 031790 112 FYDGKEVAKYQGPRDVESLKTFVLE 136 (153)
Q Consensus 112 ~~~g~~~~~~~g~~~~~~i~~~l~~ 136 (153)
|++|+.+.++.|..+.+.+.++|++
T Consensus 86 ~~~g~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 86 IINGQVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred EECCEEEEEecCCCCHHHHHHHHhc
Confidence 9999999899999999999999865
No 15
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.92 E-value=1.9e-24 Score=135.19 Aligned_cols=101 Identities=38% Similarity=0.776 Sum_probs=92.1
Q ss_pred ceEEeCcccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC--chhhhhhCCCCccceE
Q 031790 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA--SKTLCSKVDIHSYPTF 109 (153)
Q Consensus 32 ~~~~l~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~ 109 (153)
.+.+++.++|++.+.+++++++|.||++||++|+.+.|.++++++.+.+ .+.|+.+|++. ++.++++|+|.++|++
T Consensus 1 ~v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~--~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~ 78 (109)
T cd03002 1 PVYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG--LVQVAAVDCDEDKNKPLCGKYGVQGFPTL 78 (109)
T ss_pred CeEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC--CceEEEEecCccccHHHHHHcCCCcCCEE
Confidence 3678899999999988888899999999999999999999999999875 68999999998 8899999999999999
Q ss_pred EEEeCCe-----eeeeecCCCCHHHHHHHH
Q 031790 110 KVFYDGK-----EVAKYQGPRDVESLKTFV 134 (153)
Q Consensus 110 ~~~~~g~-----~~~~~~g~~~~~~i~~~l 134 (153)
++|++|+ ....|.|..+.+++.+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 79 KVFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred EEEeCCCcccccccccccCccCHHHHHHHh
Confidence 9999875 467889999999999987
No 16
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.92 E-value=9.1e-24 Score=138.59 Aligned_cols=96 Identities=24% Similarity=0.559 Sum_probs=86.0
Q ss_pred hcCCCceEEeCcccHHHHhcc-CCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCc
Q 031790 27 IHSKSEVITLTPDTFTDKVKE-KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHS 105 (153)
Q Consensus 27 ~~~~~~~~~l~~~~~~~~~~~-~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~ 105 (153)
+.....+.+++.++|++.+.. .+++++|.||++||++|+.+.|.++++++.+.+ .++.|++||++++++++++|+|.+
T Consensus 24 ~~~~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~-~~v~f~~VDvd~~~~la~~~~V~~ 102 (152)
T cd02962 24 YMGPEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNN-NNLKFGKIDIGRFPNVAEKFRVST 102 (152)
T ss_pred cCCCCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc-CCeEEEEEECCCCHHHHHHcCcee
Confidence 444568899999999998854 457899999999999999999999999998864 359999999999999999999988
Q ss_pred ------cceEEEEeCCeeeeeecC
Q 031790 106 ------YPTFKVFYDGKEVAKYQG 123 (153)
Q Consensus 106 ------~Pt~~~~~~g~~~~~~~g 123 (153)
+||+++|++|+.+.++.|
T Consensus 103 ~~~v~~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 103 SPLSKQLPTIILFQGGKEVARRPY 126 (152)
T ss_pred cCCcCCCCEEEEEECCEEEEEEec
Confidence 999999999999999987
No 17
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.92 E-value=6.5e-24 Score=131.17 Aligned_cols=99 Identities=31% Similarity=0.629 Sum_probs=88.2
Q ss_pred ceEEeCcccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEE
Q 031790 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKV 111 (153)
Q Consensus 32 ~~~~l~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 111 (153)
.+.+++.++|++.+. + .++|.||++||++|+.+.|.++++++.++. .++.++.+|+++++.++++|+|.++||+++
T Consensus 2 ~v~~l~~~~f~~~~~--~-~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~-~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02994 2 NVVELTDSNWTLVLE--G-EWMIEFYAPWCPACQQLQPEWEEFADWSDD-LGINVAKVDVTQEPGLSGRFFVTALPTIYH 77 (101)
T ss_pred ceEEcChhhHHHHhC--C-CEEEEEECCCCHHHHHHhHHHHHHHHhhcc-CCeEEEEEEccCCHhHHHHcCCcccCEEEE
Confidence 467899999998774 2 269999999999999999999999987653 369999999999999999999999999999
Q ss_pred EeCCeeeeeecCCCCHHHHHHHHH
Q 031790 112 FYDGKEVAKYQGPRDVESLKTFVL 135 (153)
Q Consensus 112 ~~~g~~~~~~~g~~~~~~i~~~l~ 135 (153)
+++|+. .++.|..+.+++.+|++
T Consensus 78 ~~~g~~-~~~~G~~~~~~l~~~i~ 100 (101)
T cd02994 78 AKDGVF-RRYQGPRDKEDLISFIE 100 (101)
T ss_pred eCCCCE-EEecCCCCHHHHHHHHh
Confidence 999974 78999999999999986
No 18
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.91 E-value=6e-24 Score=131.41 Aligned_cols=100 Identities=44% Similarity=0.948 Sum_probs=90.5
Q ss_pred eEEeCcccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcC-CCCeEEEEeeCCCchhhhhhCCCCccceEEE
Q 031790 33 VITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEG-DDEIEVGEVDCGASKTLCSKVDIHSYPTFKV 111 (153)
Q Consensus 33 ~~~l~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 111 (153)
+.+++.++|++.+.++ +++|.||++||++|+.+.|.++++++.+++ ..++.++.+|+++++.++++|+|.++|++++
T Consensus 2 ~~~l~~~~f~~~~~~~--~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 79 (102)
T cd03005 2 VLELTEDNFDHHIAEG--NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLL 79 (102)
T ss_pred eeECCHHHHHHHhhcC--CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEE
Confidence 5678899999998543 589999999999999999999999999875 3469999999999999999999999999999
Q ss_pred EeCCeeeeeecCCCCHHHHHHHH
Q 031790 112 FYDGKEVAKYQGPRDVESLKTFV 134 (153)
Q Consensus 112 ~~~g~~~~~~~g~~~~~~i~~~l 134 (153)
|++|+.+.++.|..+.+++.+||
T Consensus 80 ~~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 80 FKDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EeCCCeeeEeeCCCCHHHHHhhC
Confidence 99999888999999999988875
No 19
>PRK10996 thioredoxin 2; Provisional
Probab=99.91 E-value=2.4e-23 Score=135.55 Aligned_cols=105 Identities=26% Similarity=0.551 Sum_probs=96.0
Q ss_pred CCceEEeCcccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceE
Q 031790 30 KSEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTF 109 (153)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 109 (153)
.+.+.+++.++|++.+. ++++++|+||++||++|+.+.|.++++++.+.+ ++.|+++|+++++.++++|+|.++|++
T Consensus 34 ~~~~i~~~~~~~~~~i~-~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~~l~~~~~V~~~Ptl 110 (139)
T PRK10996 34 DGEVINATGETLDKLLQ-DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG--KVRFVKVNTEAERELSARFRIRSIPTI 110 (139)
T ss_pred CCCCEEcCHHHHHHHHh-CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CeEEEEEeCCCCHHHHHhcCCCccCEE
Confidence 45577788889998775 578899999999999999999999999998876 699999999999999999999999999
Q ss_pred EEEeCCeeeeeecCCCCHHHHHHHHHHH
Q 031790 110 KVFYDGKEVAKYQGPRDVESLKTFVLEE 137 (153)
Q Consensus 110 ~~~~~g~~~~~~~g~~~~~~i~~~l~~~ 137 (153)
++|++|+.+.++.|..+.+.+.+|++++
T Consensus 111 ii~~~G~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 111 MIFKNGQVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred EEEECCEEEEEEcCCCCHHHHHHHHHHh
Confidence 9999999999999999999999999875
No 20
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.91 E-value=2.5e-23 Score=128.97 Aligned_cols=95 Identities=16% Similarity=0.281 Sum_probs=82.3
Q ss_pred CcccHHHHhccC-CccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCch---hhhhhCCCCccceEEEE
Q 031790 37 TPDTFTDKVKEK-DTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASK---TLCSKVDIHSYPTFKVF 112 (153)
Q Consensus 37 ~~~~~~~~~~~~-~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~Pt~~~~ 112 (153)
+.++|++.+.+. +++++|.||++||++|+.+.|.++++++.++ ++.|+.||+++++ +++++|+|.++||+++|
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~---~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~ 78 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN---DVVFLLVNGDENDSTMELCRREKIIEVPHFLFY 78 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC---CCEEEEEECCCChHHHHHHHHcCCCcCCEEEEE
Confidence 356788888654 8899999999999999999999999999883 5999999999874 79999999999999999
Q ss_pred eCCeeeeeecCCCCHHHHHHHHH
Q 031790 113 YDGKEVAKYQGPRDVESLKTFVL 135 (153)
Q Consensus 113 ~~g~~~~~~~g~~~~~~i~~~l~ 135 (153)
++|+.+.++.|. ..+++.+.+.
T Consensus 79 ~~G~~v~~~~G~-~~~~l~~~~~ 100 (103)
T cd02985 79 KDGEKIHEEEGI-GPDELIGDVL 100 (103)
T ss_pred eCCeEEEEEeCC-CHHHHHHHHH
Confidence 999999999996 5566666554
No 21
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.91 E-value=2.7e-23 Score=128.65 Aligned_cols=100 Identities=37% Similarity=0.786 Sum_probs=91.7
Q ss_pred eEEeCcccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEE
Q 031790 33 VITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVF 112 (153)
Q Consensus 33 ~~~l~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 112 (153)
+.+++.++|.+.+.++++++++.||++||++|+.+.|.+.++++.+.+ .+.|+.+|+++++.++++++|.++|++++|
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~--~~~~~~id~~~~~~~~~~~~i~~~P~~~~~ 79 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG--IVKVGAVDADVHQSLAQQYGVRGFPTIKVF 79 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CceEEEEECcchHHHHHHCCCCccCEEEEE
Confidence 567889999999987778899999999999999999999999998876 699999999999999999999999999999
Q ss_pred eCC-eeeeeecCCCCHHHHHHHH
Q 031790 113 YDG-KEVAKYQGPRDVESLKTFV 134 (153)
Q Consensus 113 ~~g-~~~~~~~g~~~~~~i~~~l 134 (153)
++| +....|.|..+.+++.+|+
T Consensus 80 ~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 80 GAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CCCCcceeecCCCCCHHHHHHHh
Confidence 988 5667899999999999886
No 22
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.91 E-value=2.2e-23 Score=129.16 Aligned_cols=102 Identities=31% Similarity=0.683 Sum_probs=91.8
Q ss_pred ceEEeCcccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEE
Q 031790 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKV 111 (153)
Q Consensus 32 ~~~~l~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 111 (153)
++.+++.++|++.+.+.+++++|.||++||++|+.+.|.++++++.+++..++.++.+|++++ +++..+++.++|++++
T Consensus 1 ~v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~ 79 (104)
T cd02995 1 PVKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILF 79 (104)
T ss_pred CeEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEE
Confidence 367899999999998878899999999999999999999999999987655799999999987 6788999999999999
Q ss_pred EeCCe--eeeeecCCCCHHHHHHHH
Q 031790 112 FYDGK--EVAKYQGPRDVESLKTFV 134 (153)
Q Consensus 112 ~~~g~--~~~~~~g~~~~~~i~~~l 134 (153)
|++|+ ...++.|..+.+++.+||
T Consensus 80 ~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 80 FPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred EcCCCcCCceEccCCcCHHHHHhhC
Confidence 99887 567899999999998875
No 23
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.90 E-value=2.7e-23 Score=128.32 Aligned_cols=101 Identities=41% Similarity=0.767 Sum_probs=91.3
Q ss_pred eCcccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEeCC
Q 031790 36 LTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYDG 115 (153)
Q Consensus 36 l~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 115 (153)
++.++|++.+. ++++++|.||++||++|+.+.+.++++++.+++..++.++.+|+++++.++++|++.++|++++|++|
T Consensus 1 l~~~~~~~~~~-~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~ 79 (102)
T TIGR01126 1 LTASNFDDIVL-SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG 79 (102)
T ss_pred CchhhHHHHhc-cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence 46778888886 68889999999999999999999999999887644699999999999999999999999999999988
Q ss_pred eeeeeecCCCCHHHHHHHHHHH
Q 031790 116 KEVAKYQGPRDVESLKTFVLEE 137 (153)
Q Consensus 116 ~~~~~~~g~~~~~~i~~~l~~~ 137 (153)
+.+..+.|..+.+++.+||+++
T Consensus 80 ~~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 80 KKPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred CcceeecCCCCHHHHHHHHHhc
Confidence 7677899999999999999864
No 24
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.90 E-value=2.8e-23 Score=128.01 Aligned_cols=90 Identities=20% Similarity=0.398 Sum_probs=80.0
Q ss_pred HHHHhc-cCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCC-CchhhhhhCCCCccceEEEEeCCeee
Q 031790 41 FTDKVK-EKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCG-ASKTLCSKVDIHSYPTFKVFYDGKEV 118 (153)
Q Consensus 41 ~~~~~~-~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~-~~~~~~~~~~v~~~Pt~~~~~~g~~~ 118 (153)
+.+.+. .++++++|.|||+||++|+.+.|.++++++.+++ +.++.||.+ +++.++++|+|.++||+++|++| .+
T Consensus 9 ~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~---~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~ 84 (100)
T cd02999 9 ALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ---IRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PR 84 (100)
T ss_pred HHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc---CceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ce
Confidence 334443 3688899999999999999999999999998865 889999998 78999999999999999999999 77
Q ss_pred eeecCCCCHHHHHHHH
Q 031790 119 AKYQGPRDVESLKTFV 134 (153)
Q Consensus 119 ~~~~g~~~~~~i~~~l 134 (153)
.++.|..+.+++.+|+
T Consensus 85 ~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 85 VRYNGTRTLDSLAAFY 100 (100)
T ss_pred eEecCCCCHHHHHhhC
Confidence 8999999999998875
No 25
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.90 E-value=6.1e-23 Score=127.24 Aligned_cols=101 Identities=32% Similarity=0.661 Sum_probs=90.3
Q ss_pred eEEeCcccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC--chhhhhhCCCCccceEE
Q 031790 33 VITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA--SKTLCSKVDIHSYPTFK 110 (153)
Q Consensus 33 ~~~l~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~ 110 (153)
+..++..+|++.+.+ +++++|.||++||++|+.+.|.++++++.++....+.++.+|+++ ++.+++++++.++|+++
T Consensus 2 ~~~l~~~~~~~~~~~-~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~ 80 (104)
T cd02997 2 VVHLTDEDFRKFLKK-EKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK 80 (104)
T ss_pred eEEechHhHHHHHhh-CCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence 567888899988864 458899999999999999999999999988743468999999998 89999999999999999
Q ss_pred EEeCCeeeeeecCCCCHHHHHHHH
Q 031790 111 VFYDGKEVAKYQGPRDVESLKTFV 134 (153)
Q Consensus 111 ~~~~g~~~~~~~g~~~~~~i~~~l 134 (153)
+|++|+.+.++.|..+.+++.+||
T Consensus 81 ~~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 81 YFENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EEeCCCeeEEeCCCCCHHHHHhhC
Confidence 999999888999999999988875
No 26
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.90 E-value=5.3e-23 Score=127.65 Aligned_cols=102 Identities=37% Similarity=0.742 Sum_probs=91.7
Q ss_pred eEEeCcccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC-chhhhhhCCCCccceEEE
Q 031790 33 VITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA-SKTLCSKVDIHSYPTFKV 111 (153)
Q Consensus 33 ~~~l~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~v~~~Pt~~~ 111 (153)
+.+++.++|++.+.+.++++++.||++||++|+.+.|.++++++.++...++.++.+|+++ ++.++++++|.++|++++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 5678899999988777779999999999999999999999999998744579999999999 999999999999999999
Q ss_pred EeCC-eeeeeecCCCCHHHHHHHH
Q 031790 112 FYDG-KEVAKYQGPRDVESLKTFV 134 (153)
Q Consensus 112 ~~~g-~~~~~~~g~~~~~~i~~~l 134 (153)
|++| +....+.|..+.+++.+||
T Consensus 82 ~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 82 FPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EeCCCCCccccCCccCHHHHHhhC
Confidence 9866 6677889999999998875
No 27
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.90 E-value=1.2e-22 Score=131.08 Aligned_cols=104 Identities=12% Similarity=0.157 Sum_probs=90.2
Q ss_pred CcccHHHHhc-cCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEE-EEeC
Q 031790 37 TPDTFTDKVK-EKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFK-VFYD 114 (153)
Q Consensus 37 ~~~~~~~~~~-~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~-~~~~ 114 (153)
+..+|++.+. ..+++++|.|||+||++|+.+.|.++++++.+++ .+.|++||+|+++++++.|+|++.|+++ +|++
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~--~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~ 87 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKN--FAVIYLVDITEVPDFNTMYELYDPCTVMFFFRN 87 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC--ceEEEEEECCCCHHHHHHcCccCCCcEEEEEEC
Confidence 3578888886 4588999999999999999999999999999876 5888999999999999999999776666 8899
Q ss_pred Ce-eeeeecC--------CCCHHHHHHHHHHHHHhHh
Q 031790 115 GK-EVAKYQG--------PRDVESLKTFVLEEAEKAA 142 (153)
Q Consensus 115 g~-~~~~~~g--------~~~~~~i~~~l~~~~~~~~ 142 (153)
|+ .+++..| ..+.+++.+.++.....+.
T Consensus 88 g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~ 124 (142)
T PLN00410 88 KHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGAR 124 (142)
T ss_pred CeEEEEEecccccccccccCCHHHHHHHHHHHHHHHh
Confidence 98 8889999 5688899998887776554
No 28
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.90 E-value=2e-23 Score=131.50 Aligned_cols=93 Identities=24% Similarity=0.365 Sum_probs=84.4
Q ss_pred CCceEEeCcccHHHHhccC--CccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccc
Q 031790 30 KSEVITLTPDTFTDKVKEK--DTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYP 107 (153)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~--~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P 107 (153)
.+.+.+++.++|.+.+.+. +++++|+||++||++|+.+.|.++++++.+++ +.|++||++++ .++++|+|.++|
T Consensus 3 ~g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~---v~f~~vd~~~~-~l~~~~~i~~~P 78 (113)
T cd02957 3 FGEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE---TKFVKINAEKA-FLVNYLDIKVLP 78 (113)
T ss_pred CceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC---cEEEEEEchhh-HHHHhcCCCcCC
Confidence 4678889999999998765 48999999999999999999999999999865 89999999998 999999999999
Q ss_pred eEEEEeCCeeeeeecCCCC
Q 031790 108 TFKVFYDGKEVAKYQGPRD 126 (153)
Q Consensus 108 t~~~~~~g~~~~~~~g~~~ 126 (153)
|+++|++|+.+.++.|..+
T Consensus 79 t~~~f~~G~~v~~~~G~~~ 97 (113)
T cd02957 79 TLLVYKNGELIDNIVGFEE 97 (113)
T ss_pred EEEEEECCEEEEEEecHHH
Confidence 9999999999999988643
No 29
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=5.7e-23 Score=126.99 Aligned_cols=88 Identities=22% Similarity=0.471 Sum_probs=79.2
Q ss_pred hccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEeCCeeeeeecCC
Q 031790 45 VKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGP 124 (153)
Q Consensus 45 ~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~ 124 (153)
..+++++++++|||+|||+|+.+.|.+++++.++++ +.|+++|+|+.++++++++|.++||+.+|++|+.+.++.|.
T Consensus 17 ~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~---v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa 93 (106)
T KOG0907|consen 17 AEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD---VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGA 93 (106)
T ss_pred hhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC---CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecC
Confidence 344578999999999999999999999999999986 99999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHH
Q 031790 125 RDVESLKTFVLE 136 (153)
Q Consensus 125 ~~~~~i~~~l~~ 136 (153)
+.+.+.+.+..
T Consensus 94 -~~~~l~~~i~~ 104 (106)
T KOG0907|consen 94 -NKAELEKKIAK 104 (106)
T ss_pred -CHHHHHHHHHh
Confidence 44577666654
No 30
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.90 E-value=1e-22 Score=125.42 Aligned_cols=100 Identities=29% Similarity=0.590 Sum_probs=91.3
Q ss_pred eCcccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEeCC
Q 031790 36 LTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYDG 115 (153)
Q Consensus 36 l~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 115 (153)
++.+++.+.+.+.+++++++||++||++|+.+.+.++++++.+.+ ++.|+.+|+++++.++++|++.++|++++|++|
T Consensus 1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g 78 (101)
T TIGR01068 1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG--KVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNG 78 (101)
T ss_pred CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC--CeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCC
Confidence 356788888877778999999999999999999999999988875 699999999999999999999999999999999
Q ss_pred eeeeeecCCCCHHHHHHHHHHH
Q 031790 116 KEVAKYQGPRDVESLKTFVLEE 137 (153)
Q Consensus 116 ~~~~~~~g~~~~~~i~~~l~~~ 137 (153)
+...++.|..+.+++.++|++.
T Consensus 79 ~~~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 79 KEVDRSVGALPKAALKQLINKN 100 (101)
T ss_pred cEeeeecCCCCHHHHHHHHHhh
Confidence 9888999999999999999764
No 31
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.90 E-value=1.3e-22 Score=125.51 Aligned_cols=96 Identities=18% Similarity=0.362 Sum_probs=85.0
Q ss_pred CcccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEeCCe
Q 031790 37 TPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYDGK 116 (153)
Q Consensus 37 ~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 116 (153)
+.++|++.+. ++++++|+|||+||++|+.+.|.++++++.+++ ..+.|+.+|++ +++++++|+|.++||+++|++|+
T Consensus 6 ~~~~~~~~i~-~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~-~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~ 82 (102)
T cd02948 6 NQEEWEELLS-NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGD-DLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGE 82 (102)
T ss_pred CHHHHHHHHc-cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCC-CcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCE
Confidence 5677888774 678999999999999999999999999998874 35889999999 78899999999999999999999
Q ss_pred eeeeecCCCCHHHHHHHHHH
Q 031790 117 EVAKYQGPRDVESLKTFVLE 136 (153)
Q Consensus 117 ~~~~~~g~~~~~~i~~~l~~ 136 (153)
.+.+..|. +.+.+.++|++
T Consensus 83 ~~~~~~G~-~~~~~~~~i~~ 101 (102)
T cd02948 83 LVAVIRGA-NAPLLNKTITE 101 (102)
T ss_pred EEEEEecC-ChHHHHHHHhh
Confidence 99999996 88888888864
No 32
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.89 E-value=2e-22 Score=124.69 Aligned_cols=99 Identities=16% Similarity=0.216 Sum_probs=90.1
Q ss_pred CCceEEeCcccHHHHhccCCccEEEEEEcCC--ChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccc
Q 031790 30 KSEVITLTPDTFTDKVKEKDTAWFVKFCVPW--CKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYP 107 (153)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~~~~vlv~f~~~~--C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P 107 (153)
...+..++..+|++.+ ..++++++.||++| ||+|+.+.|.++++++.+++ .+.|+++|+++++.++.+|+|.++|
T Consensus 9 ~~~~~~~~~~~~~~~~-~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~--~v~f~kVdid~~~~la~~f~V~sIP 85 (111)
T cd02965 9 RHGWPRVDAATLDDWL-AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG--RFRAAVVGRADEQALAARFGVLRTP 85 (111)
T ss_pred hcCCcccccccHHHHH-hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC--cEEEEEEECCCCHHHHHHcCCCcCC
Confidence 4567888999999888 45677799999997 99999999999999999986 6899999999999999999999999
Q ss_pred eEEEEeCCeeeeeecCCCCHHHHH
Q 031790 108 TFKVFYDGKEVAKYQGPRDVESLK 131 (153)
Q Consensus 108 t~~~~~~g~~~~~~~g~~~~~~i~ 131 (153)
|+++|++|+.+.+..|..+.+++.
T Consensus 86 Tli~fkdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 86 ALLFFRDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred EEEEEECCEEEEEEeCccCHHHHh
Confidence 999999999999999998877764
No 33
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.89 E-value=5.6e-22 Score=124.74 Aligned_cols=92 Identities=23% Similarity=0.290 Sum_probs=82.3
Q ss_pred CCceEEeCc-ccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccce
Q 031790 30 KSEVITLTP-DTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPT 108 (153)
Q Consensus 30 ~~~~~~l~~-~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt 108 (153)
.+.+.+++. ++|.+.+.+ +++++|+||++||++|+.+.|.++++++.+++ +.|++||++++++++++|+|.++||
T Consensus 3 ~g~v~~i~~~~~~~~~i~~-~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~---i~f~~Vd~~~~~~l~~~~~v~~vPt 78 (113)
T cd02989 3 HGKYREVSDEKEFFEIVKS-SERVVCHFYHPEFFRCKIMDKHLEILAKKHLE---TKFIKVNAEKAPFLVEKLNIKVLPT 78 (113)
T ss_pred CCCeEEeCCHHHHHHHHhC-CCcEEEEEECCCCccHHHHHHHHHHHHHHcCC---CEEEEEEcccCHHHHHHCCCccCCE
Confidence 467788887 888888864 57889999999999999999999999998865 8999999999999999999999999
Q ss_pred EEEEeCCeeeeeecCCC
Q 031790 109 FKVFYDGKEVAKYQGPR 125 (153)
Q Consensus 109 ~~~~~~g~~~~~~~g~~ 125 (153)
+++|++|+.+.++.|..
T Consensus 79 ~l~fk~G~~v~~~~g~~ 95 (113)
T cd02989 79 VILFKNGKTVDRIVGFE 95 (113)
T ss_pred EEEEECCEEEEEEECcc
Confidence 99999999998887653
No 34
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.89 E-value=3.5e-22 Score=125.05 Aligned_cols=102 Identities=25% Similarity=0.604 Sum_probs=87.6
Q ss_pred ceEEeCcccHHHHhc--cCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC-chhhhh-hCCCCccc
Q 031790 32 EVITLTPDTFTDKVK--EKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA-SKTLCS-KVDIHSYP 107 (153)
Q Consensus 32 ~~~~l~~~~~~~~~~--~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-~~~~~~-~~~v~~~P 107 (153)
.+.+++.++|++.+. +++++++|.||++||++|+.+.|.++++++.+++ .++.++.||++. +..+++ .+++.++|
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~-~~~~~~~vd~d~~~~~~~~~~~~v~~~P 80 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAG-SNVKVAKFNADGEQREFAKEELQLKSFP 80 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhcc-CCeEEEEEECCccchhhHHhhcCCCcCC
Confidence 467889999998884 3578999999999999999999999999999884 469999999997 577886 59999999
Q ss_pred eEEEEeCC-eeeeeecCC-CCHHHHHHHH
Q 031790 108 TFKVFYDG-KEVAKYQGP-RDVESLKTFV 134 (153)
Q Consensus 108 t~~~~~~g-~~~~~~~g~-~~~~~i~~~l 134 (153)
|+++|++| .....|.|. ++.++|.+||
T Consensus 81 ti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 81 TILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 99999865 466789985 7999998875
No 35
>PTZ00102 disulphide isomerase; Provisional
Probab=99.88 E-value=4.4e-22 Score=152.93 Aligned_cols=110 Identities=30% Similarity=0.596 Sum_probs=98.4
Q ss_pred CceEEeCcccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcC-CCCeEEEEeeCCCchhhhhhCCCCccceE
Q 031790 31 SEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEG-DDEIEVGEVDCGASKTLCSKVDIHSYPTF 109 (153)
Q Consensus 31 ~~~~~l~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 109 (153)
..+..++.++|.+.+.+ ++.++|.||++||++|+.+.|.++++++.+.. ..++.|+.+||+++..+|++|+|.++||+
T Consensus 32 ~~v~~l~~~~f~~~i~~-~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~ 110 (477)
T PTZ00102 32 EHVTVLTDSTFDKFITE-NEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTI 110 (477)
T ss_pred CCcEEcchhhHHHHHhc-CCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEE
Confidence 46788999999998854 56889999999999999999999999888754 34799999999999999999999999999
Q ss_pred EEEeCCeeeeeecCCCCHHHHHHHHHHHHHhHh
Q 031790 110 KVFYDGKEVAKYQGPRDVESLKTFVLEEAEKAA 142 (153)
Q Consensus 110 ~~~~~g~~~~~~~g~~~~~~i~~~l~~~~~~~~ 142 (153)
++|++|+.+ +|.|.++.+.+.+|+.+.+++..
T Consensus 111 ~~~~~g~~~-~y~g~~~~~~l~~~l~~~~~~~~ 142 (477)
T PTZ00102 111 KFFNKGNPV-NYSGGRTADGIVSWIKKLTGPAV 142 (477)
T ss_pred EEEECCceE-EecCCCCHHHHHHHHHHhhCCCc
Confidence 999999877 89999999999999999877654
No 36
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.5e-22 Score=152.28 Aligned_cols=113 Identities=27% Similarity=0.673 Sum_probs=104.0
Q ss_pred CCCceEEeCcccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcC-CCCeEEEEeeCCCchhhhhhCCCCccc
Q 031790 29 SKSEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEG-DDEIEVGEVDCGASKTLCSKVDIHSYP 107 (153)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~vd~~~~~~~~~~~~v~~~P 107 (153)
....+..++.++|.+.+. .+..++|.||||||+||+++.|.+++.+..+.. ...+..++|||+++.++|.+|+|+++|
T Consensus 23 ~~~~Vl~Lt~dnf~~~i~-~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyP 101 (493)
T KOG0190|consen 23 AEEDVLVLTKDNFKETIN-GHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYP 101 (493)
T ss_pred cccceEEEecccHHHHhc-cCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCC
Confidence 577899999999999996 455669999999999999999999999999887 468999999999999999999999999
Q ss_pred eEEEEeCCeeeeeecCCCCHHHHHHHHHHHHHhHh
Q 031790 108 TFKVFYDGKEVAKYQGPRDVESLKTFVLEEAEKAA 142 (153)
Q Consensus 108 t~~~~~~g~~~~~~~g~~~~~~i~~~l~~~~~~~~ 142 (153)
|+-+|++|.....|.|.+..+.|.+|+.+..+++.
T Consensus 102 TlkiFrnG~~~~~Y~G~r~adgIv~wl~kq~gPa~ 136 (493)
T KOG0190|consen 102 TLKIFRNGRSAQDYNGPREADGIVKWLKKQSGPAS 136 (493)
T ss_pred eEEEEecCCcceeccCcccHHHHHHHHHhccCCCc
Confidence 99999999887899999999999999999888765
No 37
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.88 E-value=1.3e-21 Score=120.05 Aligned_cols=93 Identities=19% Similarity=0.388 Sum_probs=85.3
Q ss_pred HHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEeCCeeeee
Q 031790 41 FTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYDGKEVAK 120 (153)
Q Consensus 41 ~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 120 (153)
+...+.+.+++++++||++||++|+.+.+.++++++.+.+ ++.++.+|+++++++++++++.++|+++++++|+.+.+
T Consensus 5 ~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~--~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~ 82 (97)
T cd02949 5 LRKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG--AVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKE 82 (97)
T ss_pred HHHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC--ceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEE
Confidence 4566677889999999999999999999999999988875 69999999999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHH
Q 031790 121 YQGPRDVESLKTFVL 135 (153)
Q Consensus 121 ~~g~~~~~~i~~~l~ 135 (153)
+.|..+.+++.++++
T Consensus 83 ~~g~~~~~~~~~~l~ 97 (97)
T cd02949 83 ISGVKMKSEYREFIE 97 (97)
T ss_pred EeCCccHHHHHHhhC
Confidence 999999999988873
No 38
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.88 E-value=1.2e-21 Score=119.98 Aligned_cols=94 Identities=23% Similarity=0.482 Sum_probs=82.8
Q ss_pred cccHHHHhccC-CccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEeCCe
Q 031790 38 PDTFTDKVKEK-DTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYDGK 116 (153)
Q Consensus 38 ~~~~~~~~~~~-~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 116 (153)
.++|++.+... +++++|.||++||++|+.+.+.++++++.+.. ++.++++|++++++++++|++.++|++++|++|+
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~--~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 79 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP--SVLFLSIEAEELPEISEKFEITAVPTFVFFRNGT 79 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC--ceEEEEEccccCHHHHHhcCCccccEEEEEECCE
Confidence 46778887655 68999999999999999999999999998633 6999999999999999999999999999999999
Q ss_pred eeeeecCCCCHHHHHHHH
Q 031790 117 EVAKYQGPRDVESLKTFV 134 (153)
Q Consensus 117 ~~~~~~g~~~~~~i~~~l 134 (153)
.+.+..|. +.+++.+.|
T Consensus 80 ~~~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 80 IVDRVSGA-DPKELAKKV 96 (97)
T ss_pred EEEEEeCC-CHHHHHHhh
Confidence 99898997 567776655
No 39
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.87 E-value=9.4e-22 Score=120.69 Aligned_cols=99 Identities=45% Similarity=0.909 Sum_probs=88.0
Q ss_pred EeCcccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEeC
Q 031790 35 TLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYD 114 (153)
Q Consensus 35 ~l~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 114 (153)
+++.++|.+.+.+.+ +++|.||++||++|+.+.+.++++++.++...++.|+.+|++++..++++|+|.++|++++|++
T Consensus 2 ~l~~~~~~~~i~~~~-~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02961 2 ELTDDNFDELVKDSK-DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN 80 (101)
T ss_pred cccHHHHHHHHhCCC-cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence 567788998887555 8999999999999999999999999998533479999999999999999999999999999987
Q ss_pred C-eeeeeecCCCCHHHHHHHH
Q 031790 115 G-KEVAKYQGPRDVESLKTFV 134 (153)
Q Consensus 115 g-~~~~~~~g~~~~~~i~~~l 134 (153)
| +...++.|..+.+++.+|+
T Consensus 81 ~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 81 GSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCcccccCCCCcCHHHHHhhC
Confidence 7 7788999998999988774
No 40
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.87 E-value=4.2e-21 Score=129.19 Aligned_cols=103 Identities=19% Similarity=0.339 Sum_probs=88.7
Q ss_pred CCCceEEeCc-ccHHHHhccCC--ccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCc
Q 031790 29 SKSEVITLTP-DTFTDKVKEKD--TAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHS 105 (153)
Q Consensus 29 ~~~~~~~l~~-~~~~~~~~~~~--~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~ 105 (153)
..+.+.+++. ++|.+.+.+.+ .+++|+||++||++|+.+.|.+++++..++. +.|++||++++ .++.+|+|.+
T Consensus 60 ~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~---vkF~kVd~d~~-~l~~~f~v~~ 135 (175)
T cd02987 60 RFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA---VKFCKIRASAT-GASDEFDTDA 135 (175)
T ss_pred CCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCC---eEEEEEeccch-hhHHhCCCCC
Confidence 4678899998 99999986543 5899999999999999999999999999875 99999999987 8999999999
Q ss_pred cceEEEEeCCeeeeeecCC-------CCHHHHHHHHH
Q 031790 106 YPTFKVFYDGKEVAKYQGP-------RDVESLKTFVL 135 (153)
Q Consensus 106 ~Pt~~~~~~g~~~~~~~g~-------~~~~~i~~~l~ 135 (153)
+||+++|++|+.+.++.|. .+.+.+..+|.
T Consensus 136 vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~ 172 (175)
T cd02987 136 LPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLV 172 (175)
T ss_pred CCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHH
Confidence 9999999999998888764 34555655554
No 41
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.87 E-value=2.9e-21 Score=119.93 Aligned_cols=96 Identities=31% Similarity=0.791 Sum_probs=82.9
Q ss_pred ccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcC-CCCeEEEEeeCCCchhhhhhCCCCccceEEEEeCCee
Q 031790 39 DTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEG-DDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYDGKE 117 (153)
Q Consensus 39 ~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 117 (153)
++|++. . .+++++|.||++||++|+.+.|.++++++.+++ ..++.++.+|+++.+.++++|+|.++|++++|++|.
T Consensus 7 ~~~~~~-~-~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~- 83 (104)
T cd03000 7 DSFKDV-R-KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDL- 83 (104)
T ss_pred hhhhhh-c-cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCC-
Confidence 666764 3 356899999999999999999999999998864 235999999999999999999999999999997764
Q ss_pred eeeecCCCCHHHHHHHHHHH
Q 031790 118 VAKYQGPRDVESLKTFVLEE 137 (153)
Q Consensus 118 ~~~~~g~~~~~~i~~~l~~~ 137 (153)
..++.|..+.+++.+|+++.
T Consensus 84 ~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 84 AYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred ceeecCCCCHHHHHHHHHhh
Confidence 46789999999999999764
No 42
>PTZ00102 disulphide isomerase; Provisional
Probab=99.87 E-value=2.7e-21 Score=148.54 Aligned_cols=111 Identities=29% Similarity=0.558 Sum_probs=100.2
Q ss_pred CCceEEeCcccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceE
Q 031790 30 KSEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTF 109 (153)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 109 (153)
.+.+..++.++|++.+.+++++++|.|||+||++|+.+.|.++++++.+++...+.++.+|++.+...++.++++++|++
T Consensus 356 ~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~ 435 (477)
T PTZ00102 356 DGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTI 435 (477)
T ss_pred CCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeE
Confidence 34588899999999988888999999999999999999999999999887655799999999999999999999999999
Q ss_pred EEEeCCee-eeeecCCCCHHHHHHHHHHHHHh
Q 031790 110 KVFYDGKE-VAKYQGPRDVESLKTFVLEEAEK 140 (153)
Q Consensus 110 ~~~~~g~~-~~~~~g~~~~~~i~~~l~~~~~~ 140 (153)
++|++|+. ..++.|..+.+++.+||+++...
T Consensus 436 ~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 436 LFVKAGERTPIPYEGERTVEGFKEFVNKHATN 467 (477)
T ss_pred EEEECCCcceeEecCcCCHHHHHHHHHHcCCC
Confidence 99997754 45899999999999999998764
No 43
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.86 E-value=4.5e-21 Score=118.66 Aligned_cols=96 Identities=13% Similarity=0.216 Sum_probs=80.1
Q ss_pred ccHHHHhcc-CCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEeCCee
Q 031790 39 DTFTDKVKE-KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYDGKE 117 (153)
Q Consensus 39 ~~~~~~~~~-~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 117 (153)
++|++.+.+ ++++++|.|+++||++|+.+.|.++++++.+++ .+.|++||+++.+++++.|+|.+.||+++|++|+.
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~--~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh 80 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK--MASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQH 80 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccC--ceEEEEEeccccHHHHHhcCceeCcEEEEEECCcE
Confidence 567777754 489999999999999999999999999999964 39999999999999999999999999999999987
Q ss_pred eeeecCC----------CCHHHHHHHHHH
Q 031790 118 VAKYQGP----------RDVESLKTFVLE 136 (153)
Q Consensus 118 ~~~~~g~----------~~~~~i~~~l~~ 136 (153)
+..-.|. .+.++++..++.
T Consensus 81 ~~~d~gt~~~~k~~~~~~~k~~~idi~e~ 109 (114)
T cd02986 81 MKVDYGSPDHTKFVGSFKTKQDFIDLIEV 109 (114)
T ss_pred EEEecCCCCCcEEEEEcCchhHHHHHHHH
Confidence 6444332 245666666654
No 44
>PTZ00051 thioredoxin; Provisional
Probab=99.86 E-value=7.3e-21 Score=116.81 Aligned_cols=95 Identities=29% Similarity=0.535 Sum_probs=80.6
Q ss_pred eEEeCc-ccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEE
Q 031790 33 VITLTP-DTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKV 111 (153)
Q Consensus 33 ~~~l~~-~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 111 (153)
+.+++. +++.+.+ +.+++++++||++||++|+.+.+.++++++.+.+ +.|+.+|++++..++++|++.++|++++
T Consensus 2 v~~i~~~~~~~~~~-~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~---~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 77 (98)
T PTZ00051 2 VHIVTSQAEFESTL-SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK---MVFVKVDVDELSEVAEKENITSMPTFKV 77 (98)
T ss_pred eEEecCHHHHHHHH-hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC---cEEEEEECcchHHHHHHCCCceeeEEEE
Confidence 344554 4555555 5678899999999999999999999999997764 9999999999999999999999999999
Q ss_pred EeCCeeeeeecCCCCHHHHHH
Q 031790 112 FYDGKEVAKYQGPRDVESLKT 132 (153)
Q Consensus 112 ~~~g~~~~~~~g~~~~~~i~~ 132 (153)
|++|+.+.++.|. ..++|.+
T Consensus 78 ~~~g~~~~~~~G~-~~~~~~~ 97 (98)
T PTZ00051 78 FKNGSVVDTLLGA-NDEALKQ 97 (98)
T ss_pred EeCCeEEEEEeCC-CHHHhhc
Confidence 9999999999997 5566543
No 45
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.86 E-value=2.3e-21 Score=120.33 Aligned_cols=94 Identities=15% Similarity=0.306 Sum_probs=81.1
Q ss_pred ccHHHHhccCCccEEEEEEcCCChHHHhHHHHH---HHHHHHhcCCCCeEEEEeeCCC----chhhhhhCCCCccceEEE
Q 031790 39 DTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLW---EDLGKAMEGDDEIEVGEVDCGA----SKTLCSKVDIHSYPTFKV 111 (153)
Q Consensus 39 ~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~~ 111 (153)
+.|.+.+ +++++++|.||++||++|+.+.+.+ +++++.+.+ ++.++.+|+++ .+.++++|++.++|++++
T Consensus 2 ~~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 2 AALAQAL-AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK--DVVLLRADWTKNDPEITALLKRFGVFGPPTYLF 78 (104)
T ss_pred HHHHHHH-HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC--CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 3556666 4578999999999999999999988 677777765 69999999987 578899999999999999
Q ss_pred Ee--CCeeeeeecCCCCHHHHHHHHH
Q 031790 112 FY--DGKEVAKYQGPRDVESLKTFVL 135 (153)
Q Consensus 112 ~~--~g~~~~~~~g~~~~~~i~~~l~ 135 (153)
|+ +|+.+.++.|..+.+++.++|+
T Consensus 79 ~~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 79 YGPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred ECCCCCCCCcccccccCHHHHHHHhC
Confidence 98 7888899999999999998873
No 46
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.86 E-value=1e-20 Score=123.50 Aligned_cols=101 Identities=12% Similarity=0.227 Sum_probs=85.9
Q ss_pred cccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCc--hhhhhhCCCCccceEEEEe-C
Q 031790 38 PDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGAS--KTLCSKVDIHSYPTFKVFY-D 114 (153)
Q Consensus 38 ~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~~-~ 114 (153)
..++++.+ ..+++++|+||++||++|+.+.|.++++++.+.+ ++.|+.||++.+ ..++++|+|.++|++++|+ +
T Consensus 10 ~~~~~~a~-~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~--~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~ 86 (142)
T cd02950 10 STPPEVAL-SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD--QVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDRE 86 (142)
T ss_pred cCCHHHHH-hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc--CeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCC
Confidence 34566655 4678999999999999999999999999998875 477777777654 5789999999999999995 8
Q ss_pred CeeeeeecCCCCHHHHHHHHHHHHHhH
Q 031790 115 GKEVAKYQGPRDVESLKTFVLEEAEKA 141 (153)
Q Consensus 115 g~~~~~~~g~~~~~~i~~~l~~~~~~~ 141 (153)
|+.+.++.|..+.+++.++|++.+...
T Consensus 87 G~~v~~~~G~~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 87 GNEEGQSIGLQPKQVLAQNLDALVAGE 113 (142)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 999999999999999999999887643
No 47
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.84 E-value=1.8e-20 Score=117.08 Aligned_cols=99 Identities=23% Similarity=0.352 Sum_probs=81.8
Q ss_pred ceEEeCcccHHHHhccCCccEEEEEEc--CCCh---HHHhHHHHHHHHHHHhcCCCCeEEEEeeC-----CCchhhhhhC
Q 031790 32 EVITLTPDTFTDKVKEKDTAWFVKFCV--PWCK---HCKNLGSLWEDLGKAMEGDDEIEVGEVDC-----GASKTLCSKV 101 (153)
Q Consensus 32 ~~~~l~~~~~~~~~~~~~~~vlv~f~~--~~C~---~C~~~~~~~~~~~~~~~~~~~~~~~~vd~-----~~~~~~~~~~ 101 (153)
.+..++..+|++.+. +++.++|.||| |||+ +|+.+.|.+...+. .+.+++||| .++.++|++|
T Consensus 2 g~v~L~~~nF~~~v~-~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~------~v~lakVd~~d~~~~~~~~L~~~y 74 (116)
T cd03007 2 GCVDLDTVTFYKVIP-KFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD------DLLVAEVGIKDYGEKLNMELGERY 74 (116)
T ss_pred CeeECChhhHHHHHh-cCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC------ceEEEEEecccccchhhHHHHHHh
Confidence 467899999999985 45678999999 8888 67666666554432 499999999 4578899999
Q ss_pred CCC--ccceEEEEeCCe--eeeeecCC-CCHHHHHHHHHHH
Q 031790 102 DIH--SYPTFKVFYDGK--EVAKYQGP-RDVESLKTFVLEE 137 (153)
Q Consensus 102 ~v~--~~Pt~~~~~~g~--~~~~~~g~-~~~~~i~~~l~~~ 137 (153)
+|+ ++||+.+|++|+ ....|.|. ++.++|.+||.+.
T Consensus 75 ~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 75 KLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999 999999999885 45689996 9999999999764
No 48
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.7e-20 Score=128.70 Aligned_cols=109 Identities=24% Similarity=0.476 Sum_probs=97.2
Q ss_pred eEEeC-cccHHHHhcc-CCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEE
Q 031790 33 VITLT-PDTFTDKVKE-KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFK 110 (153)
Q Consensus 33 ~~~l~-~~~~~~~~~~-~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 110 (153)
++.++ +.+|+..+.. ..+.++|.|++.||++|+...|.|++++.+|++ ..|.+||+++.+..+..++|.+.||++
T Consensus 3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~---aVFlkVdVd~c~~taa~~gV~amPTFi 79 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG---AVFLKVDVDECRGTAATNGVNAMPTFI 79 (288)
T ss_pred eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc---cEEEEEeHHHhhchhhhcCcccCceEE
Confidence 44554 5678877754 467899999999999999999999999999986 999999999999999999999999999
Q ss_pred EEeCCeeeeeecCCCCHHHHHHHHHHHHHhHhhhh
Q 031790 111 VFYDGKEVAKYQGPRDVESLKTFVLEEAEKAATKA 145 (153)
Q Consensus 111 ~~~~g~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~ 145 (153)
+|++|..+..+.|. +...+++.+.+++..+++.+
T Consensus 80 ff~ng~kid~~qGA-d~~gLe~kv~~~~stsaa~~ 113 (288)
T KOG0908|consen 80 FFRNGVKIDQIQGA-DASGLEEKVAKYASTSAASS 113 (288)
T ss_pred EEecCeEeeeecCC-CHHHHHHHHHHHhccCcccc
Confidence 99999999999999 88999999999988776544
No 49
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.84 E-value=2.2e-20 Score=117.73 Aligned_cols=85 Identities=28% Similarity=0.722 Sum_probs=76.0
Q ss_pred ceEEeCcccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcC-CCCeEEEEeeCC--CchhhhhhCCCCccce
Q 031790 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEG-DDEIEVGEVDCG--ASKTLCSKVDIHSYPT 108 (153)
Q Consensus 32 ~~~~l~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~vd~~--~~~~~~~~~~v~~~Pt 108 (153)
.+.+++.++|++.+.+.+++++|.||++||++|+.+.|.++++++.+++ ...+.|+.+||+ .+..++++|++.++|+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 5788999999999988788999999999999999999999999998864 235999999986 4678999999999999
Q ss_pred EEEEeCCe
Q 031790 109 FKVFYDGK 116 (153)
Q Consensus 109 ~~~~~~g~ 116 (153)
+++|++|+
T Consensus 82 ~~lf~~~~ 89 (114)
T cd02992 82 LRYFPPFS 89 (114)
T ss_pred EEEECCCC
Confidence 99999886
No 50
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.84 E-value=4.1e-20 Score=141.31 Aligned_cols=110 Identities=33% Similarity=0.710 Sum_probs=98.1
Q ss_pred ceEEeCcccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcC-CCCeEEEEeeCCCchhhhhhCCCCccceEE
Q 031790 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEG-DDEIEVGEVDCGASKTLCSKVDIHSYPTFK 110 (153)
Q Consensus 32 ~~~~l~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 110 (153)
.+..++.++|.+.+. ++++++|.|||+||++|+.+.|.+.++++.+.+ ..++.|+.|||+++.++|++++|.++||++
T Consensus 2 ~v~~l~~~~~~~~i~-~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~ 80 (462)
T TIGR01130 2 DVLVLTKDNFDDFIK-SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLK 80 (462)
T ss_pred CceECCHHHHHHHHh-cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEE
Confidence 467889999999885 466889999999999999999999999988765 346999999999999999999999999999
Q ss_pred EEeCCee-eeeecCCCCHHHHHHHHHHHHHhHh
Q 031790 111 VFYDGKE-VAKYQGPRDVESLKTFVLEEAEKAA 142 (153)
Q Consensus 111 ~~~~g~~-~~~~~g~~~~~~i~~~l~~~~~~~~ 142 (153)
+|++|+. +..+.|..+.+++.+|+.+.+++..
T Consensus 81 ~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~ 113 (462)
T TIGR01130 81 IFRNGEDSVSDYNGPRDADGIVKYMKKQSGPAV 113 (462)
T ss_pred EEeCCccceeEecCCCCHHHHHHHHHHhcCCCc
Confidence 9999987 7889999999999999998876443
No 51
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.83 E-value=7.4e-20 Score=115.10 Aligned_cols=95 Identities=18% Similarity=0.269 Sum_probs=81.1
Q ss_pred HHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEeCCeeee-
Q 031790 41 FTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYDGKEVA- 119 (153)
Q Consensus 41 ~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~- 119 (153)
+.+.+. .+..+++.||++||++|+.+.|.+++++..++ .+.|..+|++++++++++|+|.++|++++|++|+...
T Consensus 15 ~~~~l~-~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~---~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~ 90 (113)
T cd02975 15 FFKEMK-NPVDLVVFSSKEGCQYCEVTKQLLEELSELSD---KLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGG 90 (113)
T ss_pred HHHHhC-CCeEEEEEeCCCCCCChHHHHHHHHHHHHhcC---ceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecce
Confidence 445553 45567899999999999999999999998763 4999999999999999999999999999999765433
Q ss_pred -eecCCCCHHHHHHHHHHHHH
Q 031790 120 -KYQGPRDVESLKTFVLEEAE 139 (153)
Q Consensus 120 -~~~g~~~~~~i~~~l~~~~~ 139 (153)
++.|..+..++.++|....+
T Consensus 91 ~~~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 91 IRYYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred EEEEecCchHHHHHHHHHHHh
Confidence 78899999999999987764
No 52
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.83 E-value=8.4e-20 Score=124.41 Aligned_cols=102 Identities=18% Similarity=0.261 Sum_probs=87.0
Q ss_pred cCCCceEEeCcccHHHHhccC--CccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCc
Q 031790 28 HSKSEVITLTPDTFTDKVKEK--DTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHS 105 (153)
Q Consensus 28 ~~~~~~~~l~~~~~~~~~~~~--~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~ 105 (153)
...+.+.+++.++|.+.+.+. +.+|+|+||++||++|+.+.|.+++++..+.. +.|++||+++. ...|++.+
T Consensus 79 ~~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~---vkFvkI~ad~~---~~~~~i~~ 152 (192)
T cd02988 79 SKFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD---TKFVKIISTQC---IPNYPDKN 152 (192)
T ss_pred CCCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC---CEEEEEEhHHh---HhhCCCCC
Confidence 356889999999999887554 35899999999999999999999999999875 99999998753 57999999
Q ss_pred cceEEEEeCCeeeeeecCC-------CCHHHHHHHHH
Q 031790 106 YPTFKVFYDGKEVAKYQGP-------RDVESLKTFVL 135 (153)
Q Consensus 106 ~Pt~~~~~~g~~~~~~~g~-------~~~~~i~~~l~ 135 (153)
+||+++|++|+.+.++.|. .+.+.+..+|.
T Consensus 153 lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~ 189 (192)
T cd02988 153 LPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLV 189 (192)
T ss_pred CCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHH
Confidence 9999999999999988874 45566666654
No 53
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.7e-20 Score=141.28 Aligned_cols=107 Identities=29% Similarity=0.633 Sum_probs=95.6
Q ss_pred CceEEeCcccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEE
Q 031790 31 SEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFK 110 (153)
Q Consensus 31 ~~~~~l~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 110 (153)
.++..+-.++|++.+.+.++.|+|.||||||+||+++.|.++++++.+++..++.++++|.+.|.. ....+.++|||+
T Consensus 366 ~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~--~~~~~~~fPTI~ 443 (493)
T KOG0190|consen 366 SPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDV--PSLKVDGFPTIL 443 (493)
T ss_pred CCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccC--ccccccccceEE
Confidence 468888899999999999999999999999999999999999999999998899999999988754 345677799999
Q ss_pred EEeCCe--eeeeecCCCCHHHHHHHHHHHHH
Q 031790 111 VFYDGK--EVAKYQGPRDVESLKTFVLEEAE 139 (153)
Q Consensus 111 ~~~~g~--~~~~~~g~~~~~~i~~~l~~~~~ 139 (153)
+++.|. .+..|.|.++.+++..|+.....
T Consensus 444 ~~pag~k~~pv~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 444 FFPAGHKSNPVIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred EecCCCCCCCcccCCCcchHHHHhhhccCCC
Confidence 999664 56789999999999999988776
No 54
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.83 E-value=9.2e-20 Score=137.82 Aligned_cols=107 Identities=25% Similarity=0.579 Sum_probs=91.5
Q ss_pred CCCceEEeCcccHHHHhc--cCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCch-hhh-hhCCCC
Q 031790 29 SKSEVITLTPDTFTDKVK--EKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASK-TLC-SKVDIH 104 (153)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~--~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~-~~~~v~ 104 (153)
.+..+.+++.++|++.+. +.+++++|.||++||++|+.+.|.++++++.+++ .++.|+.||++.+. .++ ++|+|.
T Consensus 349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~-~~v~~~kVdvD~~~~~~~~~~~~I~ 427 (463)
T TIGR00424 349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAG-SGVKVAKFRADGDQKEFAKQELQLG 427 (463)
T ss_pred CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc-CCcEEEEEECCCCccHHHHHHcCCC
Confidence 456899999999999984 4688999999999999999999999999999875 35899999998764 444 689999
Q ss_pred ccceEEEEeCCe-eeeeec-CCCCHHHHHHHHHH
Q 031790 105 SYPTFKVFYDGK-EVAKYQ-GPRDVESLKTFVLE 136 (153)
Q Consensus 105 ~~Pt~~~~~~g~-~~~~~~-g~~~~~~i~~~l~~ 136 (153)
++||+++|++|+ ....|. |.++.+.|..|++.
T Consensus 428 ~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 428 SFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred ccceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 999999999874 455787 58999999999964
No 55
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.83 E-value=1.4e-19 Score=115.81 Aligned_cols=98 Identities=18% Similarity=0.292 Sum_probs=80.9
Q ss_pred cHHHHhccCC-ccEEEEEEcCCChHHHhHHHHHH---HHHHHhcCCCCeEEEEeeCCCc-------------hhhhhhCC
Q 031790 40 TFTDKVKEKD-TAWFVKFCVPWCKHCKNLGSLWE---DLGKAMEGDDEIEVGEVDCGAS-------------KTLCSKVD 102 (153)
Q Consensus 40 ~~~~~~~~~~-~~vlv~f~~~~C~~C~~~~~~~~---~~~~~~~~~~~~~~~~vd~~~~-------------~~~~~~~~ 102 (153)
.+.+... ++ ++++|.||++||++|+.+.+.+. ++.+.+.+ ++.++.+|++++ ..++++|+
T Consensus 5 ~~~~a~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~ 81 (125)
T cd02951 5 DLAEAAA-DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA--HFVVVYINIDGDKEVTDFDGEALSEKELARKYR 81 (125)
T ss_pred HHHHHHH-cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh--heEEEEEEccCCceeeccCCCCccHHHHHHHcC
Confidence 3444444 45 89999999999999999999885 55555554 689999998864 67899999
Q ss_pred CCccceEEEEeC--CeeeeeecCCCCHHHHHHHHHHHHHh
Q 031790 103 IHSYPTFKVFYD--GKEVAKYQGPRDVESLKTFVLEEAEK 140 (153)
Q Consensus 103 v~~~Pt~~~~~~--g~~~~~~~g~~~~~~i~~~l~~~~~~ 140 (153)
+.++|+++++++ |+.+.++.|..+.+.+.++|+...+.
T Consensus 82 v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 82 VRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred CccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 999999999984 58889999999999999999887664
No 56
>PLN02309 5'-adenylylsulfate reductase
Probab=99.83 E-value=1.2e-19 Score=137.20 Aligned_cols=108 Identities=25% Similarity=0.591 Sum_probs=93.2
Q ss_pred CCCceEEeCcccHHHHhc--cCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCC-Cchhhhh-hCCCC
Q 031790 29 SKSEVITLTPDTFTDKVK--EKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCG-ASKTLCS-KVDIH 104 (153)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~--~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~-~~~~~~~-~~~v~ 104 (153)
....+.+++.++|++.+. +.+++++|.||+|||++|+.+.|.++++++.+.+ .++.|+++|++ .+..++. +|+|.
T Consensus 343 ~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~-~~V~f~kVD~d~~~~~la~~~~~I~ 421 (457)
T PLN02309 343 NSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAG-SGVKVAKFRADGDQKEFAKQELQLG 421 (457)
T ss_pred CCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc-CCeEEEEEECCCcchHHHHhhCCCc
Confidence 345788899999999874 5688999999999999999999999999999875 36999999999 7788886 69999
Q ss_pred ccceEEEEeCCe-eeeeecC-CCCHHHHHHHHHHH
Q 031790 105 SYPTFKVFYDGK-EVAKYQG-PRDVESLKTFVLEE 137 (153)
Q Consensus 105 ~~Pt~~~~~~g~-~~~~~~g-~~~~~~i~~~l~~~ 137 (153)
++||+++|++|. ....|.| .++.+.|.+|++..
T Consensus 422 ~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 422 SFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred eeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 999999998764 4567774 68999999999753
No 57
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.82 E-value=2.5e-19 Score=108.03 Aligned_cols=91 Identities=30% Similarity=0.598 Sum_probs=81.6
Q ss_pred cHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEeCCeeee
Q 031790 40 TFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYDGKEVA 119 (153)
Q Consensus 40 ~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 119 (153)
+|.+.+.+. ++++++||++||++|+.+.+.++++++. . .++.++.+|++++..+++.+++.++|+++++++|+.+.
T Consensus 2 ~~~~~~~~~-~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~--~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~ 77 (93)
T cd02947 2 EFEELIKSA-KPVVVDFWAPWCGPCKAIAPVLEELAEE-Y--PKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVD 77 (93)
T ss_pred chHHHHhcC-CcEEEEEECCCChhHHHhhHHHHHHHHH-C--CCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEE
Confidence 566666544 8889999999999999999999999888 3 36999999999999999999999999999999999999
Q ss_pred eecCCCCHHHHHHHH
Q 031790 120 KYQGPRDVESLKTFV 134 (153)
Q Consensus 120 ~~~g~~~~~~i~~~l 134 (153)
.+.|..+.+.+.++|
T Consensus 78 ~~~g~~~~~~l~~~i 92 (93)
T cd02947 78 RVVGADPKEELEEFL 92 (93)
T ss_pred EEecCCCHHHHHHHh
Confidence 999998889988886
No 58
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.82 E-value=3.4e-19 Score=113.35 Aligned_cols=99 Identities=15% Similarity=0.183 Sum_probs=78.5
Q ss_pred ceEEeCcccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCch-----------hhhhh
Q 031790 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASK-----------TLCSK 100 (153)
Q Consensus 32 ~~~~l~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-----------~~~~~ 100 (153)
....++.+++.+.+. +++.++|+||++|||+|+.+.|.++++++.. +..++.+|++.+. ++.++
T Consensus 7 ~~~~it~~~~~~~i~-~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~----~~~~y~vdvd~~~~~~~~~~~~~~~~~~~ 81 (122)
T TIGR01295 7 GLEVTTVVRALEALD-KKETATFFIGRKTCPYCRKFSGTLSGVVAQT----KAPIYYIDSENNGSFEMSSLNDLTAFRSR 81 (122)
T ss_pred cceecCHHHHHHHHH-cCCcEEEEEECCCChhHHHHhHHHHHHHHhc----CCcEEEEECCCccCcCcccHHHHHHHHHH
Confidence 456677788888886 4556799999999999999999999999872 3667777777443 34455
Q ss_pred CC----CCccceEEEEeCCeeeeeecC-CCCHHHHHHHHH
Q 031790 101 VD----IHSYPTFKVFYDGKEVAKYQG-PRDVESLKTFVL 135 (153)
Q Consensus 101 ~~----v~~~Pt~~~~~~g~~~~~~~g-~~~~~~i~~~l~ 135 (153)
|+ +.++||+++|++|+.+.+..| ..+.+++.+|+.
T Consensus 82 ~~i~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 82 FGIPTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred cCCcccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 54 556999999999999999999 456889988863
No 59
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.77 E-value=3.5e-19 Score=125.75 Aligned_cols=91 Identities=32% Similarity=0.792 Sum_probs=82.0
Q ss_pred CCccEEEEEEcCCChHHHhHHHHHHHHHHHhcC-CCCeEEEEeeCCCchhhhhhCCCCccceEEEEeCCeeeeeecCCCC
Q 031790 48 KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEG-DDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRD 126 (153)
Q Consensus 48 ~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~ 126 (153)
++..|+|.||||||+||+++.|.|.++...+++ ...+.++++||+..+.++.+++|+++||+.++++|..+ .|.|.+.
T Consensus 42 dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~-dYRG~R~ 120 (468)
T KOG4277|consen 42 DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAI-DYRGGRE 120 (468)
T ss_pred cCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeee-ecCCCcc
Confidence 577899999999999999999999999888876 55799999999999999999999999999999888655 7899999
Q ss_pred HHHHHHHHHHHHH
Q 031790 127 VESLKTFVLEEAE 139 (153)
Q Consensus 127 ~~~i~~~l~~~~~ 139 (153)
.+.+.+|..+...
T Consensus 121 Kd~iieFAhR~a~ 133 (468)
T KOG4277|consen 121 KDAIIEFAHRCAA 133 (468)
T ss_pred HHHHHHHHHhccc
Confidence 9999999876544
No 60
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.77 E-value=5.1e-18 Score=129.76 Aligned_cols=109 Identities=27% Similarity=0.604 Sum_probs=94.7
Q ss_pred CCceEEeCcccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcC-CCCeEEEEeeCCCchhhhhhCCCCccce
Q 031790 30 KSEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEG-DDEIEVGEVDCGASKTLCSKVDIHSYPT 108 (153)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~vd~~~~~~~~~~~~v~~~Pt 108 (153)
.+.+..++..+|.+.+.+.+++++|.||++||++|+.+.|.++++++.+.+ ..++.|+.+|++.+.. .. +++.++|+
T Consensus 345 ~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~-~~-~~i~~~Pt 422 (462)
T TIGR01130 345 EGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDV-PP-FEVEGFPT 422 (462)
T ss_pred CCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCcc-CC-CCccccCE
Confidence 346778899999999988889999999999999999999999999999986 3479999999998753 33 99999999
Q ss_pred EEEEeCCee--eeeecCCCCHHHHHHHHHHHHHh
Q 031790 109 FKVFYDGKE--VAKYQGPRDVESLKTFVLEEAEK 140 (153)
Q Consensus 109 ~~~~~~g~~--~~~~~g~~~~~~i~~~l~~~~~~ 140 (153)
+++|++|+. ...+.|..+.+++.+||.+....
T Consensus 423 ~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~ 456 (462)
T TIGR01130 423 IKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHATF 456 (462)
T ss_pred EEEEeCCCCcCceEecCcCCHHHHHHHHHhcCCC
Confidence 999998764 36789999999999999887654
No 61
>PTZ00062 glutaredoxin; Provisional
Probab=99.77 E-value=6.4e-18 Score=115.70 Aligned_cols=92 Identities=12% Similarity=0.157 Sum_probs=80.5
Q ss_pred CcccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEeCCe
Q 031790 37 TPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYDGK 116 (153)
Q Consensus 37 ~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 116 (153)
+.+++.+.+..+.+.++++|+|+||++|+.+.+.++++++.+++ +.|++||.+ |+|.++|++++|++|+
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~---~~F~~V~~d--------~~V~~vPtfv~~~~g~ 73 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS---LEFYVVNLA--------DANNEYGVFEFYQNSQ 73 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC---cEEEEEccc--------cCcccceEEEEEECCE
Confidence 45677777765557789999999999999999999999999975 999999977 9999999999999999
Q ss_pred eeeeecCCCCHHHHHHHHHHHHHh
Q 031790 117 EVAKYQGPRDVESLKTFVLEEAEK 140 (153)
Q Consensus 117 ~~~~~~g~~~~~~i~~~l~~~~~~ 140 (153)
.+.++.|. +..++.+.+.+....
T Consensus 74 ~i~r~~G~-~~~~~~~~~~~~~~~ 96 (204)
T PTZ00062 74 LINSLEGC-NTSTLVSFIRGWAQK 96 (204)
T ss_pred EEeeeeCC-CHHHHHHHHHHHcCC
Confidence 99999998 688888888776553
No 62
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.76 E-value=1.5e-17 Score=98.67 Aligned_cols=80 Identities=19% Similarity=0.327 Sum_probs=71.3
Q ss_pred EEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEeCCeeeeeecCCCCHHHHH
Q 031790 52 WFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLK 131 (153)
Q Consensus 52 vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~i~ 131 (153)
.+..||++||++|+.+.+.++++++.++. ++.+..||++++++++++|++.++|++++ +|+ .++.|..+.+++.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~--~~~~G~~~~~~l~ 75 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD--AVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD--VEFIGAPTKEELV 75 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC--ceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE--EEEecCCCHHHHH
Confidence 47789999999999999999999998865 59999999999999999999999999986 675 3788998999999
Q ss_pred HHHHHH
Q 031790 132 TFVLEE 137 (153)
Q Consensus 132 ~~l~~~ 137 (153)
+++++.
T Consensus 76 ~~l~~~ 81 (82)
T TIGR00411 76 EAIKKR 81 (82)
T ss_pred HHHHhh
Confidence 998764
No 63
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.75 E-value=4.9e-18 Score=119.74 Aligned_cols=105 Identities=27% Similarity=0.608 Sum_probs=92.7
Q ss_pred CcccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcC---CCCeEEEEeeCCCchhhhhhCCCCccceEEEEe
Q 031790 37 TPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEG---DDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFY 113 (153)
Q Consensus 37 ~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 113 (153)
+.++++..+. ....++|.|||+||+.++.++|.|++.++.+++ +..+.+++|||+++..++.+|.|..+||+-+|.
T Consensus 2 t~~N~~~il~-s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 2 TSENIDSILD-SNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred ccccHHHhhc-cceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence 4567777775 478889999999999999999999999877654 257999999999999999999999999999999
Q ss_pred CCeeee-eecCCCCHHHHHHHHHHHHHhHh
Q 031790 114 DGKEVA-KYQGPRDVESLKTFVLEEAEKAA 142 (153)
Q Consensus 114 ~g~~~~-~~~g~~~~~~i~~~l~~~~~~~~ 142 (153)
+|.... .|.|.++.+.+.+||++.++.+.
T Consensus 81 nG~~~~rEYRg~RsVeaL~efi~kq~s~~i 110 (375)
T KOG0912|consen 81 NGEMMKREYRGQRSVEALIEFIEKQLSDPI 110 (375)
T ss_pred ccchhhhhhccchhHHHHHHHHHHHhccHH
Confidence 998775 89999999999999999877653
No 64
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.75 E-value=1.3e-17 Score=103.15 Aligned_cols=87 Identities=17% Similarity=0.193 Sum_probs=78.0
Q ss_pred CccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCC--ccceEEEEeC--CeeeeeecCC
Q 031790 49 DTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIH--SYPTFKVFYD--GKEVAKYQGP 124 (153)
Q Consensus 49 ~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~--~~Pt~~~~~~--g~~~~~~~g~ 124 (153)
++++++.|+++||++|+.+.+.++++++.+.+ .+.|+.+|+++++++++.+++. ++|+++++++ |+......|.
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~--~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~ 89 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKG--KLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEE 89 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCC--eEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccc
Confidence 67899999999999999999999999999986 6999999999999999999999 9999999987 6666544555
Q ss_pred CCHHHHHHHHHHH
Q 031790 125 RDVESLKTFVLEE 137 (153)
Q Consensus 125 ~~~~~i~~~l~~~ 137 (153)
.+.+++.+|+++.
T Consensus 90 ~~~~~l~~fi~~~ 102 (103)
T cd02982 90 LTAESLEEFVEDF 102 (103)
T ss_pred cCHHHHHHHHHhh
Confidence 6899999999764
No 65
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.73 E-value=1.1e-17 Score=105.68 Aligned_cols=93 Identities=13% Similarity=0.200 Sum_probs=68.6
Q ss_pred hccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCch-hhhhhCCCCc--cceEEEEe-CCeeee-
Q 031790 45 VKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASK-TLCSKVDIHS--YPTFKVFY-DGKEVA- 119 (153)
Q Consensus 45 ~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~--~Pt~~~~~-~g~~~~- 119 (153)
.+.++++++|.||++||++|+.+.|.+.+....... +..|+.+|++.+. ...+.|++.+ +|+++++. +|+.+.
T Consensus 15 A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~--~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~ 92 (117)
T cd02959 15 AKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL--SHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPE 92 (117)
T ss_pred HHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh--cCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchh
Confidence 345688999999999999999999999987665443 2345555555443 4456888876 99999996 888765
Q ss_pred --eecCCCCHHHHHHHHHHHHH
Q 031790 120 --KYQGPRDVESLKTFVLEEAE 139 (153)
Q Consensus 120 --~~~g~~~~~~i~~~l~~~~~ 139 (153)
...|..+.+.+...++...+
T Consensus 93 ~~~~~~~~~~~~f~~~~~~~~~ 114 (117)
T cd02959 93 IINKKGNPNYKYFYSSAAQVTE 114 (117)
T ss_pred hccCCCCccccccCCCHHHHHh
Confidence 45667777777777665543
No 66
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.73 E-value=3.9e-17 Score=102.87 Aligned_cols=80 Identities=16% Similarity=0.304 Sum_probs=68.5
Q ss_pred CcccHHHHhccC-CccEEEEEEc-------CCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC-------chhhhhhC
Q 031790 37 TPDTFTDKVKEK-DTAWFVKFCV-------PWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA-------SKTLCSKV 101 (153)
Q Consensus 37 ~~~~~~~~~~~~-~~~vlv~f~~-------~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-------~~~~~~~~ 101 (153)
+.++|.+.+... +++++|.||| +||++|+.+.|.++++++.+++ ++.|++||+++ +.++..++
T Consensus 8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~--~v~fv~Vdvd~~~~w~d~~~~~~~~~ 85 (119)
T cd02952 8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE--DCVFIYCDVGDRPYWRDPNNPFRTDP 85 (119)
T ss_pred CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC--CCEEEEEEcCCcccccCcchhhHhcc
Confidence 346777777643 6899999999 9999999999999999999875 59999999976 45888999
Q ss_pred CCC-ccceEEEEeCCeee
Q 031790 102 DIH-SYPTFKVFYDGKEV 118 (153)
Q Consensus 102 ~v~-~~Pt~~~~~~g~~~ 118 (153)
+|. ++||+++|++|+.+
T Consensus 86 ~I~~~iPT~~~~~~~~~l 103 (119)
T cd02952 86 KLTTGVPTLLRWKTPQRL 103 (119)
T ss_pred CcccCCCEEEEEcCCcee
Confidence 998 99999999877644
No 67
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=3.1e-17 Score=123.10 Aligned_cols=116 Identities=41% Similarity=0.844 Sum_probs=101.8
Q ss_pred hhcCCCceEEeCcccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCc
Q 031790 26 MIHSKSEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHS 105 (153)
Q Consensus 26 ~~~~~~~~~~l~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~ 105 (153)
.....+....++..++.......+++++|.||+|||++|+.+.|.+++++..+++ .+.++.|||+.+.++|++|+|.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~--~~~~~~vd~~~~~~~~~~y~i~g 101 (383)
T KOG0191|consen 24 LYLASGVVSELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG--KVKIGAVDCDEHKDLCEKYGIQG 101 (383)
T ss_pred hhccccchhhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcC--ceEEEEeCchhhHHHHHhcCCcc
Confidence 3445556666667788888877889999999999999999999999999999987 79999999999999999999999
Q ss_pred cceEEEEeCCeeeeeecCCCCHHHHHHHHHHHHHhHhh
Q 031790 106 YPTFKVFYDGKEVAKYQGPRDVESLKTFVLEEAEKAAT 143 (153)
Q Consensus 106 ~Pt~~~~~~g~~~~~~~g~~~~~~i~~~l~~~~~~~~~ 143 (153)
+||+.+|.+|..+..+.|..+.+.+..++...++....
T Consensus 102 fPtl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (383)
T KOG0191|consen 102 FPTLKVFRPGKKPIDYSGPRNAESLAEFLIKELEPSVK 139 (383)
T ss_pred CcEEEEEcCCCceeeccCcccHHHHHHHHHHhhccccc
Confidence 99999999886667888999999999999888876653
No 68
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.72 E-value=6e-17 Score=112.72 Aligned_cols=90 Identities=20% Similarity=0.296 Sum_probs=77.6
Q ss_pred cEEEEEEc---CCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEeCCeee-eeecCCCC
Q 031790 51 AWFVKFCV---PWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYDGKEV-AKYQGPRD 126 (153)
Q Consensus 51 ~vlv~f~~---~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~-~~~~g~~~ 126 (153)
..++.|++ +||++|+.+.|.++++++.+++ -.+.++.+|.+++++++++|+|.++||+++|++|+.. .++.|..+
T Consensus 21 ~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~-~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~~ 99 (215)
T TIGR02187 21 VEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK-LKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIPA 99 (215)
T ss_pred eEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC-ceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecCC
Confidence 34667888 9999999999999999998854 2366777787799999999999999999999999887 48999999
Q ss_pred HHHHHHHHHHHHHhH
Q 031790 127 VESLKTFVLEEAEKA 141 (153)
Q Consensus 127 ~~~i~~~l~~~~~~~ 141 (153)
.+++.++|+..++-+
T Consensus 100 ~~~l~~~i~~~~~~~ 114 (215)
T TIGR02187 100 GYEFAALIEDIVRVS 114 (215)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999998886543
No 69
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.70 E-value=6e-17 Score=101.63 Aligned_cols=86 Identities=26% Similarity=0.373 Sum_probs=65.7
Q ss_pred cCCccEEEEEEcCCChHHHhHHHHHHHHHH---HhcCCCCeEEEEeeCCCc--------------------hhhhhhCCC
Q 031790 47 EKDTAWFVKFCVPWCKHCKNLGSLWEDLGK---AMEGDDEIEVGEVDCGAS--------------------KTLCSKVDI 103 (153)
Q Consensus 47 ~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~---~~~~~~~~~~~~vd~~~~--------------------~~~~~~~~v 103 (153)
.++++++++|+++||++|+.+.+.+.+..+ .+.. ++.++.++++.. .++++.++|
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 80 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD--DFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV 80 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC--ECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT-
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc--CeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC
Confidence 467889999999999999999999886443 3333 688888887643 347889999
Q ss_pred CccceEEEEe-CCeeeeeecCCCCHHHHHHHH
Q 031790 104 HSYPTFKVFY-DGKEVAKYQGPRDVESLKTFV 134 (153)
Q Consensus 104 ~~~Pt~~~~~-~g~~~~~~~g~~~~~~i~~~l 134 (153)
.++||+++++ +|+.+.++.|..+.+++.++|
T Consensus 81 ~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 81 NGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp -SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred CccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 9999999996 899898999999999998875
No 70
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.70 E-value=1.7e-15 Score=103.20 Aligned_cols=90 Identities=13% Similarity=0.206 Sum_probs=73.3
Q ss_pred CCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCch-----------------------hhhhhCCCC
Q 031790 48 KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASK-----------------------TLCSKVDIH 104 (153)
Q Consensus 48 ~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-----------------------~~~~~~~v~ 104 (153)
.+++++|+||++||++|++..|.+.++.+. ++.++.|+.++++ .+.+.|++.
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~-----~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~ 141 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ-----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVY 141 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc-----CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCC
Confidence 477899999999999999999999888542 4777777765432 234478999
Q ss_pred ccceEEEEe-CCeeeeeecCCCCHHHHHHHHHHHHHhHh
Q 031790 105 SYPTFKVFY-DGKEVAKYQGPRDVESLKTFVLEEAEKAA 142 (153)
Q Consensus 105 ~~Pt~~~~~-~g~~~~~~~g~~~~~~i~~~l~~~~~~~~ 142 (153)
++|+.++++ +|+...++.|..+.+++.+.++..+....
T Consensus 142 ~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~~~ 180 (185)
T PRK15412 142 GAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEKYS 180 (185)
T ss_pred cCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHHHHH
Confidence 999877775 89999999999999999999998887655
No 71
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=5.6e-17 Score=122.76 Aligned_cols=115 Identities=23% Similarity=0.519 Sum_probs=93.5
Q ss_pred hcCCCceEEeCcccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcC-CCCeEEEEeeCC--CchhhhhhCCC
Q 031790 27 IHSKSEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEG-DDEIEVGEVDCG--ASKTLCSKVDI 103 (153)
Q Consensus 27 ~~~~~~~~~l~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~vd~~--~~~~~~~~~~v 103 (153)
+..++++..++.++|...+..+++..+|.||++|||+|+++.|.|+++++.+.. ..-+.++.|||. .|..+|++++|
T Consensus 35 y~~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V 114 (606)
T KOG1731|consen 35 YSPDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSV 114 (606)
T ss_pred cCCCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCC
Confidence 445678999999999999988877889999999999999999999999998876 556899999995 68899999999
Q ss_pred CccceEEEEeCCeee----eeecCCCCHHHHHHHHHHHHHhH
Q 031790 104 HSYPTFKVFYDGKEV----AKYQGPRDVESLKTFVLEEAEKA 141 (153)
Q Consensus 104 ~~~Pt~~~~~~g~~~----~~~~g~~~~~~i~~~l~~~~~~~ 141 (153)
.++|++.+|+.+-.- ..+.|.....++...+.+.+...
T Consensus 115 ~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~ 156 (606)
T KOG1731|consen 115 SGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEE 156 (606)
T ss_pred CCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHH
Confidence 999999999644211 23455555777777776665543
No 72
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.69 E-value=3.7e-15 Score=100.29 Aligned_cols=88 Identities=22% Similarity=0.384 Sum_probs=75.0
Q ss_pred CCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC----------------------chhhhhhCCCCc
Q 031790 48 KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA----------------------SKTLCSKVDIHS 105 (153)
Q Consensus 48 ~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~----------------------~~~~~~~~~v~~ 105 (153)
.+++++|+||++||++|+...+.+.++++.+++ .++.++.++++. +..+++.|++.+
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~-~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 138 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKE-KGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGP 138 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhc-CCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCC
Confidence 467899999999999999999999999998875 358888888753 346678999999
Q ss_pred cceEEEEe-CCeeeeeecCCCCHHHHHHHHHH
Q 031790 106 YPTFKVFY-DGKEVAKYQGPRDVESLKTFVLE 136 (153)
Q Consensus 106 ~Pt~~~~~-~g~~~~~~~g~~~~~~i~~~l~~ 136 (153)
+|++++++ +|+.+..+.|..+.+++.+++++
T Consensus 139 ~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~ 170 (173)
T PRK03147 139 LPTTFLIDKDGKVVKVITGEMTEEQLEEYLEK 170 (173)
T ss_pred cCeEEEECCCCcEEEEEeCCCCHHHHHHHHHH
Confidence 99999886 78888888999999999998864
No 73
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.68 E-value=3e-16 Score=122.72 Aligned_cols=98 Identities=17% Similarity=0.331 Sum_probs=80.1
Q ss_pred cccHHHHhc---cCCccEEEEEEcCCChHHHhHHHHH---HHHHHHhcCCCCeEEEEeeCCCc----hhhhhhCCCCccc
Q 031790 38 PDTFTDKVK---EKDTAWFVKFCVPWCKHCKNLGSLW---EDLGKAMEGDDEIEVGEVDCGAS----KTLCSKVDIHSYP 107 (153)
Q Consensus 38 ~~~~~~~~~---~~~~~vlv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd~~~~----~~~~~~~~v~~~P 107 (153)
.+++++.+. .++++++|+||++||++|+.+++.+ +++.+.++ ++.++++|++++ .+++++|++.++|
T Consensus 460 ~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~---~~~~v~vDvt~~~~~~~~l~~~~~v~g~P 536 (571)
T PRK00293 460 VAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA---DTVLLQADVTANNAEDVALLKHYNVLGLP 536 (571)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc---CCEEEEEECCCCChhhHHHHHHcCCCCCC
Confidence 456666653 2468999999999999999999875 56666665 489999999753 5788999999999
Q ss_pred eEEEEe-CCee--eeeecCCCCHHHHHHHHHHHH
Q 031790 108 TFKVFY-DGKE--VAKYQGPRDVESLKTFVLEEA 138 (153)
Q Consensus 108 t~~~~~-~g~~--~~~~~g~~~~~~i~~~l~~~~ 138 (153)
++++|+ +|+. ..++.|..+.+++.+++++..
T Consensus 537 t~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 537 TILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred EEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 999997 7876 368899999999999998753
No 74
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.67 E-value=9.4e-16 Score=97.50 Aligned_cols=99 Identities=14% Similarity=0.137 Sum_probs=72.5
Q ss_pred cccHHHHhccCCccEEEEEEcCCChHHHhHHHHH---HHHHHHhcCCCCeEEEEeeCCCchhhhh--------hCCCCcc
Q 031790 38 PDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLW---EDLGKAMEGDDEIEVGEVDCGASKTLCS--------KVDIHSY 106 (153)
Q Consensus 38 ~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd~~~~~~~~~--------~~~v~~~ 106 (153)
++.+.+. ++++++++|.||++||++|+.|.+.. .++.+.+.. ++.++++|.++++++++ .|++.++
T Consensus 5 ~eal~~A-k~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~--~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~ 81 (124)
T cd02955 5 EEAFEKA-RREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE--NFVPIKVDREERPDVDKIYMNAAQAMTGQGGW 81 (124)
T ss_pred HHHHHHH-HHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC--CEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCC
Confidence 3444443 45788999999999999999998743 355665544 69999999998887765 3589999
Q ss_pred ceEEEEe-CCeeeeeecCC-----CCHHHHHHHHHHHHH
Q 031790 107 PTFKVFY-DGKEVAKYQGP-----RDVESLKTFVLEEAE 139 (153)
Q Consensus 107 Pt~~~~~-~g~~~~~~~g~-----~~~~~i~~~l~~~~~ 139 (153)
|+++++. +|+.+....+. .+...+.++++....
T Consensus 82 Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (124)
T cd02955 82 PLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIRE 120 (124)
T ss_pred CEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHHH
Confidence 9999996 78877555443 345577777765543
No 75
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.66 E-value=4.7e-15 Score=97.64 Aligned_cols=85 Identities=14% Similarity=0.166 Sum_probs=64.2
Q ss_pred CccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCc------------hhhh-hhC---CCCccceEEEE
Q 031790 49 DTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGAS------------KTLC-SKV---DIHSYPTFKVF 112 (153)
Q Consensus 49 ~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~------------~~~~-~~~---~v~~~Pt~~~~ 112 (153)
++..+|+||++||++|+...|.++++++.+. +.++.|+.+.. .... ..+ ++.++|+.+++
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~----~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LI 125 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG----LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLV 125 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcC----CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEE
Confidence 4566999999999999999999999998874 44444444432 2222 334 78999999999
Q ss_pred e-CCee-eeeecCCCCHHHHHHHHHHH
Q 031790 113 Y-DGKE-VAKYQGPRDVESLKTFVLEE 137 (153)
Q Consensus 113 ~-~g~~-~~~~~g~~~~~~i~~~l~~~ 137 (153)
+ +|+. ...+.|..+.+++.+.+++.
T Consensus 126 D~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 126 NVNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred eCCCCEEEEEeecccCHHHHHHHHHHh
Confidence 6 5554 55789999999998888654
No 76
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.66 E-value=1e-15 Score=106.51 Aligned_cols=95 Identities=18% Similarity=0.233 Sum_probs=76.5
Q ss_pred EeCcccHHHHhccCCcc-EEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEe
Q 031790 35 TLTPDTFTDKVKEKDTA-WFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFY 113 (153)
Q Consensus 35 ~l~~~~~~~~~~~~~~~-vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 113 (153)
.++.++.+... +.+++ +++.||++||++|+.+.+.+++++...+ ++.+..+|.+++++++++|+|.++||+++++
T Consensus 119 ~L~~~~~~~l~-~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~---~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~ 194 (215)
T TIGR02187 119 GLSEKTVELLQ-SLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAND---KILGEMIEANENPDLAEKYGVMSVPKIVINK 194 (215)
T ss_pred CCCHHHHHHHH-hcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC---ceEEEEEeCCCCHHHHHHhCCccCCEEEEec
Confidence 44444433333 33444 4555999999999999999999888754 5999999999999999999999999999998
Q ss_pred CCeeeeeecCCCCHHHHHHHHHH
Q 031790 114 DGKEVAKYQGPRDVESLKTFVLE 136 (153)
Q Consensus 114 ~g~~~~~~~g~~~~~~i~~~l~~ 136 (153)
+|+. +.|..+.+++.+++.+
T Consensus 195 ~~~~---~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 195 GVEE---FVGAYPEEQFLEYILS 214 (215)
T ss_pred CCEE---EECCCCHHHHHHHHHh
Confidence 7753 8899999999999865
No 77
>PHA02125 thioredoxin-like protein
Probab=99.66 E-value=1.6e-15 Score=88.62 Aligned_cols=69 Identities=25% Similarity=0.495 Sum_probs=57.4
Q ss_pred EEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEeCCeeeeeecCCC-CHHHHH
Q 031790 53 FVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPR-DVESLK 131 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~-~~~~i~ 131 (153)
++.||++||++|+.+.|.++++. +.++.||.+++++++++|+|.++||++ +|+.+.++.|.. +..+++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~--------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~ 70 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE--------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELK 70 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh--------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHH
Confidence 78999999999999999987542 568899999999999999999999987 688888888862 334554
Q ss_pred H
Q 031790 132 T 132 (153)
Q Consensus 132 ~ 132 (153)
+
T Consensus 71 ~ 71 (75)
T PHA02125 71 E 71 (75)
T ss_pred H
Confidence 4
No 78
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.65 E-value=6.2e-15 Score=113.14 Aligned_cols=91 Identities=19% Similarity=0.321 Sum_probs=75.4
Q ss_pred cCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEee----------------------------CCCchhhh
Q 031790 47 EKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVD----------------------------CGASKTLC 98 (153)
Q Consensus 47 ~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd----------------------------~~~~~~~~ 98 (153)
+.+++++|+|||+||++|+.+.|.++++++.++. .++.|+.|. ++.+..++
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~-~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~la 132 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKF-SSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLA 132 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhcc-CCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHH
Confidence 3678999999999999999999999999998863 246555443 34456678
Q ss_pred hhCCCCccceEEEE-eCCeeeeeecCCCCHHHHHHHHHHHH
Q 031790 99 SKVDIHSYPTFKVF-YDGKEVAKYQGPRDVESLKTFVLEEA 138 (153)
Q Consensus 99 ~~~~v~~~Pt~~~~-~~g~~~~~~~g~~~~~~i~~~l~~~~ 138 (153)
+.|+|.++|+++++ ++|+.+.++.|..+.+++.++|+...
T Consensus 133 k~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~~ 173 (521)
T PRK14018 133 QSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRNPN 173 (521)
T ss_pred HHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHhh
Confidence 89999999999777 58999999999999999999998443
No 79
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.63 E-value=3e-15 Score=87.57 Aligned_cols=73 Identities=16% Similarity=0.229 Sum_probs=60.0
Q ss_pred EEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEeCCeeeeeecCC-CCHHHHH
Q 031790 53 FVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGP-RDVESLK 131 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~i~ 131 (153)
-|.||++||++|+.+.|.++++++.+.. .+.++.+| +.+.+.+|++.++|++++ +|+.+ +.|. .+.+++.
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~--~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~ 72 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGI--DAEFEKVT---DMNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIK 72 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCC--CeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHH
Confidence 3789999999999999999999999875 58888887 345578899999999999 88766 6775 4557777
Q ss_pred HHH
Q 031790 132 TFV 134 (153)
Q Consensus 132 ~~l 134 (153)
+++
T Consensus 73 ~~l 75 (76)
T TIGR00412 73 EIL 75 (76)
T ss_pred HHh
Confidence 765
No 80
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.5e-15 Score=114.00 Aligned_cols=112 Identities=38% Similarity=0.831 Sum_probs=101.9
Q ss_pred CCc-eEEeCcccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccce
Q 031790 30 KSE-VITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPT 108 (153)
Q Consensus 30 ~~~-~~~l~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt 108 (153)
... +..++..+|...+.+.+..++|.||+|||++|+.+.|.+++++..+....++.++.+|++.+..++.++++.++|+
T Consensus 142 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt 221 (383)
T KOG0191|consen 142 VEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPT 221 (383)
T ss_pred cCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCce
Confidence 344 8889999999999888999999999999999999999999999988755689999999998899999999999999
Q ss_pred EEEEeCCee-eeeecCCCCHHHHHHHHHHHHHhH
Q 031790 109 FKVFYDGKE-VAKYQGPRDVESLKTFVLEEAEKA 141 (153)
Q Consensus 109 ~~~~~~g~~-~~~~~g~~~~~~i~~~l~~~~~~~ 141 (153)
+.+|++|.. ...+.|.++.+.+.+|+....+..
T Consensus 222 ~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 222 LKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred EEEecCCCcccccccccccHHHHHHHHHhhcCCC
Confidence 999998877 778889999999999999888773
No 81
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.58 E-value=3.1e-14 Score=95.97 Aligned_cols=87 Identities=17% Similarity=0.293 Sum_probs=69.9
Q ss_pred CCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCC-----------------------CchhhhhhCCCC
Q 031790 48 KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCG-----------------------ASKTLCSKVDIH 104 (153)
Q Consensus 48 ~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~-----------------------~~~~~~~~~~v~ 104 (153)
.+++++++||++||++|+.+.|.++++.+. ++.++.|+.+ .+..+.+.|++.
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~-----~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~ 136 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD-----GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVY 136 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc-----CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCe
Confidence 468899999999999999999999888653 3555555542 233556788999
Q ss_pred ccceEEEE-eCCeeeeeecCCCCHHHHHHHHHHHHH
Q 031790 105 SYPTFKVF-YDGKEVAKYQGPRDVESLKTFVLEEAE 139 (153)
Q Consensus 105 ~~Pt~~~~-~~g~~~~~~~g~~~~~~i~~~l~~~~~ 139 (153)
++|+.+++ ++|+...++.|..+.+++.+++.+.++
T Consensus 137 ~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 137 GAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred eCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 99977777 589989999999999999999988874
No 82
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.57 E-value=5.4e-14 Score=88.56 Aligned_cols=92 Identities=14% Similarity=0.155 Sum_probs=77.8
Q ss_pred ccCCccEEEEEEcCCChHHHhHHHHH---HHHHHHhcCCCCeEEEEeeCC--CchhhhhhCCCCccceEEEEe--CCeee
Q 031790 46 KEKDTAWFVKFCVPWCKHCKNLGSLW---EDLGKAMEGDDEIEVGEVDCG--ASKTLCSKVDIHSYPTFKVFY--DGKEV 118 (153)
Q Consensus 46 ~~~~~~vlv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~--~g~~~ 118 (153)
++++++++|+|+++||++|+.+...+ +++.+.+.. ++.+..+|.+ +...+++.|++.++|+++++. +|+.+
T Consensus 14 k~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~--~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l 91 (114)
T cd02958 14 KSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE--NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVL 91 (114)
T ss_pred HhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh--CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEe
Confidence 44688999999999999999998754 456666654 6899999987 456788999999999999996 58899
Q ss_pred eeecCCCCHHHHHHHHHHHHH
Q 031790 119 AKYQGPRDVESLKTFVLEEAE 139 (153)
Q Consensus 119 ~~~~g~~~~~~i~~~l~~~~~ 139 (153)
.+..|..+++++.+.|++...
T Consensus 92 ~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 92 KVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred EEEcCCCCHHHHHHHHHHHHh
Confidence 999999999999999988764
No 83
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.57 E-value=3.9e-14 Score=101.51 Aligned_cols=88 Identities=15% Similarity=0.169 Sum_probs=71.2
Q ss_pred CCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC-----------chhhhhhCCCCccceEEEEeC-C
Q 031790 48 KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA-----------SKTLCSKVDIHSYPTFKVFYD-G 115 (153)
Q Consensus 48 ~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-----------~~~~~~~~~v~~~Pt~~~~~~-g 115 (153)
.+++++|+||++||++|+.+.|.++++++.+. +.+..|+++. +..++++++|.++|+++++++ |
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg----~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~ 240 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG----IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDP 240 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC----cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCC
Confidence 36789999999999999999999999999875 4455555443 356889999999999999985 5
Q ss_pred eee-eeecCCCCHHHHHHHHHHHHH
Q 031790 116 KEV-AKYQGPRDVESLKTFVLEEAE 139 (153)
Q Consensus 116 ~~~-~~~~g~~~~~~i~~~l~~~~~ 139 (153)
+.+ ....|..+.+++.+.+.....
T Consensus 241 ~~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 241 NQFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred CEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 544 445699999999998877665
No 84
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2.9e-13 Score=87.16 Aligned_cols=94 Identities=18% Similarity=0.272 Sum_probs=75.9
Q ss_pred hccCCccEEEEEEcCCChHHHhHHHHHH---HHHHHhcCCCCeEEEEeeCCC----------------chhhhhhCCCCc
Q 031790 45 VKEKDTAWFVKFCVPWCKHCKNLGSLWE---DLGKAMEGDDEIEVGEVDCGA----------------SKTLCSKVDIHS 105 (153)
Q Consensus 45 ~~~~~~~vlv~f~~~~C~~C~~~~~~~~---~~~~~~~~~~~~~~~~vd~~~----------------~~~~~~~~~v~~ 105 (153)
+...++..++.|-++.|++|.+++..+. ++.+.+.. ++.++.+|+.. ..++++.|++++
T Consensus 38 i~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~--hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrs 115 (182)
T COG2143 38 ISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE--HFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRS 115 (182)
T ss_pred cCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh--CeEEEEEEeccCcceEeecCceeeeecHHHHHHHhcccc
Confidence 3446778899999999999999998763 44555554 78888888752 247899999999
Q ss_pred cceEEEEe-CCeeeeeecCCCCHHHHHHHHHHHHHh
Q 031790 106 YPTFKVFY-DGKEVAKYQGPRDVESLKTFVLEEAEK 140 (153)
Q Consensus 106 ~Pt~~~~~-~g~~~~~~~g~~~~~~i~~~l~~~~~~ 140 (153)
+|++++|+ +|+.+...+|+.+++++...++-....
T Consensus 116 tPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~g 151 (182)
T COG2143 116 TPTFVFFDKTGKTILELPGYMPPEQFLAVLKYVADG 151 (182)
T ss_pred CceEEEEcCCCCEEEecCCCCCHHHHHHHHHHHHHH
Confidence 99999997 789999999999999998888655443
No 85
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.54 E-value=7.5e-14 Score=89.43 Aligned_cols=79 Identities=15% Similarity=0.300 Sum_probs=63.0
Q ss_pred CCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeC-----------------------CCchhhhhhCCCC
Q 031790 48 KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDC-----------------------GASKTLCSKVDIH 104 (153)
Q Consensus 48 ~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~-----------------------~~~~~~~~~~~v~ 104 (153)
.+++++|+||++||++|+.+.|.++++.+.+ ++.++.|+. +.+..+++.|++.
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~----~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~ 99 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQG----RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVY 99 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc----CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCC
Confidence 3678999999999999999999999987765 255555553 3445677889999
Q ss_pred ccceEEEE-eCCeeeeeecCCCCHHHH
Q 031790 105 SYPTFKVF-YDGKEVAKYQGPRDVESL 130 (153)
Q Consensus 105 ~~Pt~~~~-~~g~~~~~~~g~~~~~~i 130 (153)
++|+.+++ ++|+.+.++.|..+.+.+
T Consensus 100 ~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 100 GVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CCCeEEEECCCceEEEEEeccCChHhc
Confidence 99977776 589989999999887654
No 86
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.53 E-value=4.4e-14 Score=80.62 Aligned_cols=59 Identities=19% Similarity=0.331 Sum_probs=52.6
Q ss_pred EEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEeCCe
Q 031790 53 FVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYDGK 116 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 116 (153)
+..|+++||++|+.+.+.++++++..+ ++.+..+|+++++++++++++.++|++++ +|+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~---~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~ 61 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNP---NISAEMIDAAEFPDLADEYGVMSVPAIVI--NGK 61 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCC---ceEEEEEEcccCHhHHHHcCCcccCEEEE--CCE
Confidence 678999999999999999999977654 49999999999999999999999999876 554
No 87
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.52 E-value=9.6e-14 Score=89.42 Aligned_cols=71 Identities=17% Similarity=0.371 Sum_probs=57.5
Q ss_pred CCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCC-CCeEEEEeeCCCc------------------------hhhhhhCC
Q 031790 48 KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGD-DEIEVGEVDCGAS------------------------KTLCSKVD 102 (153)
Q Consensus 48 ~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~vd~~~~------------------------~~~~~~~~ 102 (153)
.+++++|+||++||++|+...|.+.++++.+.+. .++.++.|+.+.+ ..+++.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 4678999999999999999999999998887652 3577777766543 34677899
Q ss_pred CCccceEEEEe-CCeee
Q 031790 103 IHSYPTFKVFY-DGKEV 118 (153)
Q Consensus 103 v~~~Pt~~~~~-~g~~~ 118 (153)
+.++|++++++ +|+.+
T Consensus 97 v~~~P~~~lid~~G~i~ 113 (131)
T cd03009 97 IEGIPTLIILDADGEVV 113 (131)
T ss_pred CCCCCEEEEECCCCCEE
Confidence 99999999997 77655
No 88
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.52 E-value=1.4e-13 Score=82.80 Aligned_cols=76 Identities=16% Similarity=0.212 Sum_probs=63.9
Q ss_pred CccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEeCCeeeeeecCCCCHH
Q 031790 49 DTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVE 128 (153)
Q Consensus 49 ~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~ 128 (153)
+...+..|+++||++|....+.++++++.+++ +.+..+|.++.++++++|+|.++|++++ +|+.+. .|..+.+
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~---i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~--~G~~~~~ 84 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNPN---IEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFG--FGRMTLE 84 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCCC---ceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEE--eCCCCHH
Confidence 33458889999999999999999999987764 9999999999999999999999999975 787654 5766666
Q ss_pred HHH
Q 031790 129 SLK 131 (153)
Q Consensus 129 ~i~ 131 (153)
++.
T Consensus 85 e~~ 87 (89)
T cd03026 85 EIL 87 (89)
T ss_pred HHh
Confidence 543
No 89
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.52 E-value=3.5e-13 Score=85.95 Aligned_cols=110 Identities=12% Similarity=0.120 Sum_probs=91.0
Q ss_pred ceEEeCcccHHHHhccCCccEEEEEEcC--CChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceE
Q 031790 32 EVITLTPDTFTDKVKEKDTAWFVKFCVP--WCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTF 109 (153)
Q Consensus 32 ~~~~l~~~~~~~~~~~~~~~vlv~f~~~--~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 109 (153)
....++..+++..+...+ ..+++|-.+ -++.+....-.++++++.+.+ .++.|++||+++++.++.+|+|.++||+
T Consensus 18 g~~~~~~~~~~~~~~~~~-~~vl~~~gdp~r~~E~~D~avvleELa~e~~~-~~v~~akVDiD~~~~LA~~fgV~siPTL 95 (132)
T PRK11509 18 GWTPVSESRLDDWLTQAP-DGVVLLSSDPKRTPEVSDNPVMIGELLREFPD-YTWQVAIADLEQSEAIGDRFGVFRFPAT 95 (132)
T ss_pred CCCccccccHHHHHhCCC-cEEEEeCCCCCcCCccccHHHHHHHHHHHhcC-CceEEEEEECCCCHHHHHHcCCccCCEE
Confidence 566677788888885443 435555443 456777777788999999974 2599999999999999999999999999
Q ss_pred EEEeCCeeeeeecCCCCHHHHHHHHHHHHHhHhh
Q 031790 110 KVFYDGKEVAKYQGPRDVESLKTFVLEEAEKAAT 143 (153)
Q Consensus 110 ~~~~~g~~~~~~~g~~~~~~i~~~l~~~~~~~~~ 143 (153)
++|++|+.+.+..|..+.+++.++|++.+....+
T Consensus 96 l~FkdGk~v~~i~G~~~k~~l~~~I~~~L~~~~~ 129 (132)
T PRK11509 96 LVFTGGNYRGVLNGIHPWAELINLMRGLVEPQQE 129 (132)
T ss_pred EEEECCEEEEEEeCcCCHHHHHHHHHHHhcCcCc
Confidence 9999999999999999999999999998886543
No 90
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.51 E-value=2.4e-13 Score=86.48 Aligned_cols=92 Identities=14% Similarity=0.230 Sum_probs=68.2
Q ss_pred eCcccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeC---------------------CCc
Q 031790 36 LTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDC---------------------GAS 94 (153)
Q Consensus 36 l~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~---------------------~~~ 94 (153)
++.+.+..... .++++++.||++||++|+.+.|.+.++++.+. +..+.+|- +.+
T Consensus 8 ~~g~~~~~~~~-~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (123)
T cd03011 8 LDGEQFDLESL-SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP----VVSVALRSGDDGAVARFMQKKGYGFPVINDPD 82 (123)
T ss_pred CCCCEeeHHHh-CCCEEEEEEECCcChhhhhhChHHHHHHhhCC----EEEEEccCCCHHHHHHHHHHcCCCccEEECCC
Confidence 33344443333 34789999999999999999999998887632 32232221 345
Q ss_pred hhhhhhCCCCccceEEEEeCCeeeeeecCCCCHHHHHH
Q 031790 95 KTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKT 132 (153)
Q Consensus 95 ~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~i~~ 132 (153)
..+++.|++.++|+++++++|+....+.|..+.+++.+
T Consensus 83 ~~~~~~~~i~~~P~~~vid~~gi~~~~~g~~~~~~~~~ 120 (123)
T cd03011 83 GVISARWGVSVTPAIVIVDPGGIVFVTTGVTSEWGLRL 120 (123)
T ss_pred cHHHHhCCCCcccEEEEEcCCCeEEEEeccCCHHHHHh
Confidence 67889999999999999986667778899999988865
No 91
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.51 E-value=1.6e-13 Score=89.57 Aligned_cols=72 Identities=17% Similarity=0.272 Sum_probs=57.8
Q ss_pred CCccEEEEEEcCCChHHHhHHHHHHHHHHHhcC------CCCeEEEEeeCCCch-------------------------h
Q 031790 48 KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEG------DDEIEVGEVDCGASK-------------------------T 96 (153)
Q Consensus 48 ~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~------~~~~~~~~vd~~~~~-------------------------~ 96 (153)
.+++++|+|||+||++|+...|.+.++++.+.+ .+++.++.|+.+++. .
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 468999999999999999999999998876653 236888888877431 3
Q ss_pred hhhhCCCCccceEEEEe-CCeeee
Q 031790 97 LCSKVDIHSYPTFKVFY-DGKEVA 119 (153)
Q Consensus 97 ~~~~~~v~~~Pt~~~~~-~g~~~~ 119 (153)
++++|++.++|+.++++ +|+.+.
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~ 127 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLA 127 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEe
Confidence 56688999999999997 776653
No 92
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.51 E-value=2.3e-13 Score=112.88 Aligned_cols=96 Identities=23% Similarity=0.315 Sum_probs=80.3
Q ss_pred CCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeC---C------------------------Cchhhhhh
Q 031790 48 KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDC---G------------------------ASKTLCSK 100 (153)
Q Consensus 48 ~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~---~------------------------~~~~~~~~ 100 (153)
.+++++|+|||+||++|+...|.++++++++++ .++.++.|.. + .+..+.++
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~-~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~ 497 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKD-QPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRE 497 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCC-CCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHh
Confidence 478999999999999999999999999999875 4588877742 1 23356678
Q ss_pred CCCCccceEEEE-eCCeeeeeecCCCCHHHHHHHHHHHHHhHhhh
Q 031790 101 VDIHSYPTFKVF-YDGKEVAKYQGPRDVESLKTFVLEEAEKAATK 144 (153)
Q Consensus 101 ~~v~~~Pt~~~~-~~g~~~~~~~g~~~~~~i~~~l~~~~~~~~~~ 144 (153)
|++.++|+++++ ++|+.+.++.|....+.+.++++..+.-...+
T Consensus 498 ~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~~~~~~ 542 (1057)
T PLN02919 498 LGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQYYGEK 542 (1057)
T ss_pred cCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHHhhccc
Confidence 999999999999 59999999999999999999999887755443
No 93
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.51 E-value=1.5e-13 Score=88.73 Aligned_cols=71 Identities=20% Similarity=0.386 Sum_probs=56.9
Q ss_pred CCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCC-CCeEEEEeeCCCch-------------------------hhhhhC
Q 031790 48 KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGD-DEIEVGEVDCGASK-------------------------TLCSKV 101 (153)
Q Consensus 48 ~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~vd~~~~~-------------------------~~~~~~ 101 (153)
.+++++|+||++||++|+...|.++++++.+++. .++.++.|+.+.+. .+++.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 3678999999999999999999999999888753 35777777765432 345679
Q ss_pred CCCccceEEEEe-CCeee
Q 031790 102 DIHSYPTFKVFY-DGKEV 118 (153)
Q Consensus 102 ~v~~~Pt~~~~~-~g~~~ 118 (153)
++.++|++++++ +|+.+
T Consensus 96 ~v~~iPt~~lid~~G~iv 113 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVV 113 (132)
T ss_pred CCCCCCEEEEECCCCCEE
Confidence 999999999997 67655
No 94
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.50 E-value=1.5e-13 Score=87.55 Aligned_cols=77 Identities=13% Similarity=0.159 Sum_probs=55.4
Q ss_pred hccCCccEEEEEEcCCChHHHhHHHHH---HHHHHHhcCCCCeEEEEeeCCCch-hhhhhCCCCccceEEEEe-CCeeee
Q 031790 45 VKEKDTAWFVKFCVPWCKHCKNLGSLW---EDLGKAMEGDDEIEVGEVDCGASK-TLCSKVDIHSYPTFKVFY-DGKEVA 119 (153)
Q Consensus 45 ~~~~~~~vlv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~-~g~~~~ 119 (153)
.++++++++|+||++||++|+.+...+ .++.+.... ++..+.++.+... ... ..+ .++|++++++ +|+.+.
T Consensus 19 Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~--~Fv~V~l~~d~td~~~~-~~g-~~vPtivFld~~g~vi~ 94 (130)
T cd02960 19 AKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE--DFIMLNLVHETTDKNLS-PDG-QYVPRIMFVDPSLTVRA 94 (130)
T ss_pred HHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh--CeEEEEEEeccCCCCcC-ccC-cccCeEEEECCCCCCcc
Confidence 345789999999999999999999876 344555543 5777778765321 111 233 6899999995 788887
Q ss_pred eecCCC
Q 031790 120 KYQGPR 125 (153)
Q Consensus 120 ~~~g~~ 125 (153)
+..|..
T Consensus 95 ~i~Gy~ 100 (130)
T cd02960 95 DITGRY 100 (130)
T ss_pred cccccc
Confidence 777753
No 95
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.48 E-value=5.5e-13 Score=81.16 Aligned_cols=68 Identities=26% Similarity=0.436 Sum_probs=54.6
Q ss_pred CccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCc-------------------------hhhhhhCCC
Q 031790 49 DTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGAS-------------------------KTLCSKVDI 103 (153)
Q Consensus 49 ~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-------------------------~~~~~~~~v 103 (153)
+++++++||++||++|+...|.+.++.+.+++..++.++.|+.+++ ..+.+.|++
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 4789999999999999999999999999999445799999888753 234567899
Q ss_pred CccceEEEEe-CCe
Q 031790 104 HSYPTFKVFY-DGK 116 (153)
Q Consensus 104 ~~~Pt~~~~~-~g~ 116 (153)
.++|+++++. +|+
T Consensus 81 ~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 81 NGIPTLVLLDPDGK 94 (95)
T ss_dssp TSSSEEEEEETTSB
T ss_pred CcCCEEEEECCCCC
Confidence 9999999997 454
No 96
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=7.5e-14 Score=94.47 Aligned_cols=95 Identities=21% Similarity=0.479 Sum_probs=79.8
Q ss_pred hcCCCceEEe-CcccHHHHhcc-CCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCC
Q 031790 27 IHSKSEVITL-TPDTFTDKVKE-KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIH 104 (153)
Q Consensus 27 ~~~~~~~~~l-~~~~~~~~~~~-~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~ 104 (153)
+...+.+..+ +.+.+++.+.. ....|+|.||+.|.+.|+...|.+.++..++.. +++.|++||+..-++.+.+|+|.
T Consensus 120 y~gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~-~~lkFGkvDiGrfpd~a~kfris 198 (265)
T KOG0914|consen 120 YSGPETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNN-NLLKFGKVDIGRFPDVAAKFRIS 198 (265)
T ss_pred cCCchheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCC-CCCcccceeeccCcChHHheeec
Confidence 4556678888 45666666643 467799999999999999999999999999985 68999999999999999999885
Q ss_pred ------ccceEEEEeCCeeeeeec
Q 031790 105 ------SYPTFKVFYDGKEVAKYQ 122 (153)
Q Consensus 105 ------~~Pt~~~~~~g~~~~~~~ 122 (153)
..||+++|++|+.+.+..
T Consensus 199 ~s~~srQLPT~ilFq~gkE~~RrP 222 (265)
T KOG0914|consen 199 LSPGSRQLPTYILFQKGKEVSRRP 222 (265)
T ss_pred cCcccccCCeEEEEccchhhhcCc
Confidence 689999999998776554
No 97
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.47 E-value=6.3e-13 Score=82.82 Aligned_cols=74 Identities=26% Similarity=0.428 Sum_probs=64.7
Q ss_pred CccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCc-----------------------hhhhhhCCCCc
Q 031790 49 DTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGAS-----------------------KTLCSKVDIHS 105 (153)
Q Consensus 49 ~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-----------------------~~~~~~~~v~~ 105 (153)
++++++.||++||++|+...+.+.++.+.+.. .++.++.|+++.+ ..+.+.|++.+
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKD-DGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCC-CCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 67899999999999999999999999998863 4699999999875 67889999999
Q ss_pred cceEEEEe-CCeeeeeecC
Q 031790 106 YPTFKVFY-DGKEVAKYQG 123 (153)
Q Consensus 106 ~Pt~~~~~-~g~~~~~~~g 123 (153)
+|++++++ +|+.+.++.|
T Consensus 98 ~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 98 LPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred cceEEEECCCCcEEEEecC
Confidence 99999996 7888877765
No 98
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.46 E-value=3.6e-13 Score=103.15 Aligned_cols=104 Identities=15% Similarity=0.292 Sum_probs=80.5
Q ss_pred EEeCcc-cHHHHhccC-CccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCc----hhhhhhCCCCccc
Q 031790 34 ITLTPD-TFTDKVKEK-DTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGAS----KTLCSKVDIHSYP 107 (153)
Q Consensus 34 ~~l~~~-~~~~~~~~~-~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~----~~~~~~~~v~~~P 107 (153)
..++.. ++++.+.+. +++|+++|||+||..||.+++..-.-.+......++...++|.+++ .++.++|++-++|
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P 536 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVP 536 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCC
Confidence 445544 666666554 4699999999999999999987753222222234699999999864 3567899999999
Q ss_pred eEEEEe-CCeeeeeecCCCCHHHHHHHHHHH
Q 031790 108 TFKVFY-DGKEVAKYQGPRDVESLKTFVLEE 137 (153)
Q Consensus 108 t~~~~~-~g~~~~~~~g~~~~~~i~~~l~~~ 137 (153)
++++|+ +|+.....+|..+.+.+.+++++.
T Consensus 537 ~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 537 TYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred EEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 999998 787777799999999999999765
No 99
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.43 E-value=6.5e-14 Score=95.76 Aligned_cols=107 Identities=21% Similarity=0.455 Sum_probs=93.8
Q ss_pred cCCCceEEeCcccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccc
Q 031790 28 HSKSEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYP 107 (153)
Q Consensus 28 ~~~~~~~~l~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P 107 (153)
.....+..++.+++...+. +-+++.|+++|||.|+...+.++..+.--.+ -++.++.||+..++.+.-+|-+...|
T Consensus 21 ~r~s~~~~~~eenw~~~l~---gewmi~~~ap~~psc~~~~~~~~~~a~~s~d-L~v~va~VDvt~npgLsGRF~vtaLp 96 (248)
T KOG0913|consen 21 RRSSKLTRIDEENWKELLT---GEWMIEFGAPWCPSCSDLIPHLENFATVSLD-LGVKVAKVDVTTNPGLSGRFLVTALP 96 (248)
T ss_pred cccceeEEecccchhhhhc---hHHHHHhcCCCCccccchHHHHhccCCccCC-CceeEEEEEEEeccccceeeEEEecc
Confidence 3445788899999999883 4679999999999999999999999887665 57999999999999999999999999
Q ss_pred eEEEEeCCeeeeeecCCCCHHHHHHHHHHHHH
Q 031790 108 TFKVFYDGKEVAKYQGPRDVESLKTFVLEEAE 139 (153)
Q Consensus 108 t~~~~~~g~~~~~~~g~~~~~~i~~~l~~~~~ 139 (153)
+|+-.++|... +|.|.++..+++.|+...--
T Consensus 97 tIYHvkDGeFr-rysgaRdk~dfisf~~~r~w 127 (248)
T KOG0913|consen 97 TIYHVKDGEFR-RYSGARDKNDFISFEEHREW 127 (248)
T ss_pred eEEEeeccccc-cccCcccchhHHHHHHhhhh
Confidence 99999999655 89999999999999976543
No 100
>smart00594 UAS UAS domain.
Probab=99.42 E-value=3.2e-12 Score=81.39 Aligned_cols=96 Identities=11% Similarity=0.127 Sum_probs=75.0
Q ss_pred CcccHHHHh---ccCCccEEEEEEcCCChHHHhHHHHH---HHHHHHhcCCCCeEEEEeeCC--CchhhhhhCCCCccce
Q 031790 37 TPDTFTDKV---KEKDTAWFVKFCVPWCKHCKNLGSLW---EDLGKAMEGDDEIEVGEVDCG--ASKTLCSKVDIHSYPT 108 (153)
Q Consensus 37 ~~~~~~~~~---~~~~~~vlv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~~Pt 108 (153)
-..+|++.+ ++++|+++|+|+++||++|+.+...+ +++.+.+.. ++.+..+|++ +...++..|++.++|+
T Consensus 12 ~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~--~fv~~~~dv~~~eg~~l~~~~~~~~~P~ 89 (122)
T smart00594 12 YQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE--NFIFWQVDVDTSEGQRVSQFYKLDSFPY 89 (122)
T ss_pred eeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc--CEEEEEecCCChhHHHHHHhcCcCCCCE
Confidence 345555554 44678999999999999999998765 455566654 6888888876 4567899999999999
Q ss_pred EEEEe-CC-----eeeeeecCCCCHHHHHHHH
Q 031790 109 FKVFY-DG-----KEVAKYQGPRDVESLKTFV 134 (153)
Q Consensus 109 ~~~~~-~g-----~~~~~~~g~~~~~~i~~~l 134 (153)
++++. +| ..+.+..|..+.+++.+.|
T Consensus 90 ~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 90 VAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 99995 44 2567889999999998876
No 101
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.39 E-value=9.2e-12 Score=83.67 Aligned_cols=84 Identities=14% Similarity=0.156 Sum_probs=67.2
Q ss_pred EEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCc-------------hhhhhhCCC--CccceEEEEe-CCe
Q 031790 53 FVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGAS-------------KTLCSKVDI--HSYPTFKVFY-DGK 116 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-------------~~~~~~~~v--~~~Pt~~~~~-~g~ 116 (153)
+|+||++||++|++..|.++++++++. +.++.|+.++. ..+.+.|++ .++|+.++++ +|+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g----~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~ 148 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG----FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTL 148 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC----CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCc
Confidence 788999999999999999999999873 56655655532 124567884 6999999996 777
Q ss_pred ee-eeecCCCCHHHHHHHHHHHHHh
Q 031790 117 EV-AKYQGPRDVESLKTFVLEEAEK 140 (153)
Q Consensus 117 ~~-~~~~g~~~~~~i~~~l~~~~~~ 140 (153)
.. ..+.|..+.+++.+.+.+.+..
T Consensus 149 i~~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 149 EALPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHhh
Confidence 64 5789999999999988888765
No 102
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.37 E-value=5.7e-12 Score=80.64 Aligned_cols=76 Identities=14% Similarity=0.188 Sum_probs=61.8
Q ss_pred CCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCC-----C----------------------chhhhhh
Q 031790 48 KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCG-----A----------------------SKTLCSK 100 (153)
Q Consensus 48 ~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~-----~----------------------~~~~~~~ 100 (153)
.+++++++||+.||++|+...|.++++++.+++ .++.++.|+.+ . +..+.+.
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~-~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~ 100 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKD-DGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRA 100 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCc-CCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHH
Confidence 357899999999999999999999999999985 46888887642 1 1234567
Q ss_pred CCCCccceEEEEe-CCeeeeeecCC
Q 031790 101 VDIHSYPTFKVFY-DGKEVAKYQGP 124 (153)
Q Consensus 101 ~~v~~~Pt~~~~~-~g~~~~~~~g~ 124 (153)
|++.++|+.++++ +|+.+..+.|.
T Consensus 101 ~~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 101 YGNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred hCCCcCCeEEEECCCCcEEEEEecC
Confidence 8999999999995 78888887775
No 103
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.36 E-value=6.7e-12 Score=78.78 Aligned_cols=68 Identities=19% Similarity=0.244 Sum_probs=50.1
Q ss_pred CccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCC---C-----------------chhhhhhCCCCccce
Q 031790 49 DTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCG---A-----------------SKTLCSKVDIHSYPT 108 (153)
Q Consensus 49 ~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~---~-----------------~~~~~~~~~v~~~Pt 108 (153)
++++++.||++||++|+...|.++++++.+.+ ++.++.+.-+ + +..+.+.|++.++|+
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~ 98 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD--WLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPY 98 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcC--CcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCe
Confidence 67899999999999999999999999887754 4655555211 1 123455678888899
Q ss_pred EEEEe-CCeee
Q 031790 109 FKVFY-DGKEV 118 (153)
Q Consensus 109 ~~~~~-~g~~~ 118 (153)
.++++ +|+..
T Consensus 99 ~~vid~~G~v~ 109 (114)
T cd02967 99 AVLLDEAGVIA 109 (114)
T ss_pred EEEECCCCeEE
Confidence 88886 56543
No 104
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.35 E-value=1.8e-11 Score=80.14 Aligned_cols=85 Identities=22% Similarity=0.411 Sum_probs=66.4
Q ss_pred CCccEEEEEEcC-CChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCc---------------------hhhhhhCCCC-
Q 031790 48 KDTAWFVKFCVP-WCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGAS---------------------KTLCSKVDIH- 104 (153)
Q Consensus 48 ~~~~vlv~f~~~-~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~---------------------~~~~~~~~v~- 104 (153)
.+++++|.||+. ||++|+...|.+.++++.+.. .++.++.|..+.+ ..+.+.|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~-~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 105 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKD-KGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI 105 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT-TTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhcc-CceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence 467889999999 999999999999999988765 3577777766543 3456788988
Q ss_pred --------ccceEEEEe-CCeeeeeecCCCC--HHHHHHH
Q 031790 105 --------SYPTFKVFY-DGKEVAKYQGPRD--VESLKTF 133 (153)
Q Consensus 105 --------~~Pt~~~~~-~g~~~~~~~g~~~--~~~i~~~ 133 (153)
++|+++++. +|+.+....|..+ ..++.+.
T Consensus 106 ~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~~~~~~~~~~ 145 (146)
T PF08534_consen 106 MEDPGNGFGIPTTFLIDKDGKVVYRHVGPDPDEESDLEAV 145 (146)
T ss_dssp ECCTTTTSSSSEEEEEETTSBEEEEEESSBTTSHHSHHHH
T ss_pred ccccccCCeecEEEEEECCCEEEEEEeCCCCCCCCChhhc
Confidence 999988885 8888888888766 4444443
No 105
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.34 E-value=2.4e-12 Score=76.33 Aligned_cols=65 Identities=25% Similarity=0.468 Sum_probs=50.1
Q ss_pred ccCCccEEEEEEcCCChHHHhHHHHH---HHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEe
Q 031790 46 KEKDTAWFVKFCVPWCKHCKNLGSLW---EDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFY 113 (153)
Q Consensus 46 ~~~~~~vlv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 113 (153)
++++++++|+|+++||++|+.+...+ .++.+.+.+ ++..+++|.++...... +...++|++++++
T Consensus 14 ~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~--~fv~v~vd~~~~~~~~~-~~~~~~P~~~~ld 81 (82)
T PF13899_consen 14 KKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK--NFVLVKVDVDDEDPNAQ-FDRQGYPTFFFLD 81 (82)
T ss_dssp HHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH--CSEEEEEETTTHHHHHH-HHHCSSSEEEEEE
T ss_pred HHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC--CEEEEEEEcCCCChhHH-hCCccCCEEEEeC
Confidence 45689999999999999999999888 455554544 69999999986654332 2226799999985
No 106
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.32 E-value=6.6e-12 Score=83.68 Aligned_cols=94 Identities=24% Similarity=0.333 Sum_probs=84.0
Q ss_pred CCCceEEeC-cccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccc
Q 031790 29 SKSEVITLT-PDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYP 107 (153)
Q Consensus 29 ~~~~~~~l~-~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P 107 (153)
..+...++. +.+|.+....+.++ +++||-|.-..|+-|...++.+++.+-+ ..|++||+...|-++.+++|..+|
T Consensus 64 GhG~y~ev~~Ekdf~~~~~kS~kV-VcHFY~~~f~RCKimDkhLe~LAk~h~e---TrFikvnae~~PFlv~kL~IkVLP 139 (211)
T KOG1672|consen 64 GHGEYEEVASEKDFFEEVKKSEKV-VCHFYRPEFFRCKIMDKHLEILAKRHVE---TRFIKVNAEKAPFLVTKLNIKVLP 139 (211)
T ss_pred CCceEEEeccHHHHHHHhhcCceE-EEEEEcCCCcceehHHHHHHHHHHhccc---ceEEEEecccCceeeeeeeeeEee
Confidence 456777776 67888888765555 9999999999999999999999999987 999999999999999999999999
Q ss_pred eEEEEeCCeeeeeecCCCC
Q 031790 108 TFKVFYDGKEVAKYQGPRD 126 (153)
Q Consensus 108 t~~~~~~g~~~~~~~g~~~ 126 (153)
++++|++|+.++++.|..+
T Consensus 140 ~v~l~k~g~~~D~iVGF~d 158 (211)
T KOG1672|consen 140 TVALFKNGKTVDYVVGFTD 158 (211)
T ss_pred eEEEEEcCEEEEEEeeHhh
Confidence 9999999999999988643
No 107
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.32 E-value=1e-10 Score=79.90 Aligned_cols=86 Identities=19% Similarity=0.270 Sum_probs=60.1
Q ss_pred CCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeC------------------CCchhhhhhCCCCccceE
Q 031790 48 KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDC------------------GASKTLCSKVDIHSYPTF 109 (153)
Q Consensus 48 ~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~------------------~~~~~~~~~~~v~~~Pt~ 109 (153)
.+++++++||++||++|+...|.+.++.+.... ++.++..|- ..+.++.+.|++.++|+.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~--~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~ 150 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEET--DVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG 150 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCC--cEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence 467899999999999999999999988765422 455444210 013456778999999998
Q ss_pred EEEe-CCeeeeeecCC-CCHHHHHHHHHHH
Q 031790 110 KVFY-DGKEVAKYQGP-RDVESLKTFVLEE 137 (153)
Q Consensus 110 ~~~~-~g~~~~~~~g~-~~~~~i~~~l~~~ 137 (153)
++++ +|+... .|. ...+.+.++++..
T Consensus 151 ~lID~~G~I~~--~g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 151 VLLDQDGKIRA--KGLTNTREHLESLLEAD 178 (189)
T ss_pred EEECCCCeEEE--ccCCCCHHHHHHHHHHH
Confidence 8886 676554 344 3556777777543
No 108
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.30 E-value=3.5e-11 Score=84.43 Aligned_cols=91 Identities=14% Similarity=0.124 Sum_probs=70.1
Q ss_pred CCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC-------c----hhhh-hhCC-------------
Q 031790 48 KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA-------S----KTLC-SKVD------------- 102 (153)
Q Consensus 48 ~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-------~----~~~~-~~~~------------- 102 (153)
.+++++|.||++||++|....|.+.++++.+++ .++.++.|+++. + ...+ ++++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~-~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G 176 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKT-QGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNG 176 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhc-CCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCc
Confidence 357899999999999999999999999999975 468898888641 1 1111 1111
Q ss_pred ---------------------CCccceEEEEe-CCeeeeeecCCCCHHHHHHHHHHHHH
Q 031790 103 ---------------------IHSYPTFKVFY-DGKEVAKYQGPRDVESLKTFVLEEAE 139 (153)
Q Consensus 103 ---------------------v~~~Pt~~~~~-~g~~~~~~~g~~~~~~i~~~l~~~~~ 139 (153)
+...|+.++++ +|+.+.++.|..+.+++.+.|++.++
T Consensus 177 ~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 177 PSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred chhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 12347888885 89999999999999999999987763
No 109
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.30 E-value=3.7e-11 Score=82.67 Aligned_cols=96 Identities=13% Similarity=0.077 Sum_probs=71.7
Q ss_pred CCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC-------ch----hhhhhCCC-------------
Q 031790 48 KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA-------SK----TLCSKVDI------------- 103 (153)
Q Consensus 48 ~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-------~~----~~~~~~~v------------- 103 (153)
.+++++|.||++||++|+...|.+.++++.+.+ .++.++.|+++. ++ ..++++++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~-~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~ 116 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNP-LGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGE 116 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhc-CceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCC
Confidence 367999999999999999999999999999875 468999998631 11 12222221
Q ss_pred -----------------------Cccc---eEEEE-eCCeeeeeecCCCCHHHHHHHHHHHHHhHhhh
Q 031790 104 -----------------------HSYP---TFKVF-YDGKEVAKYQGPRDVESLKTFVLEEAEKAATK 144 (153)
Q Consensus 104 -----------------------~~~P---t~~~~-~~g~~~~~~~g~~~~~~i~~~l~~~~~~~~~~ 144 (153)
..+| +.+++ ++|+.+.++.|..+.+++.+.|++.+++....
T Consensus 117 ~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~~~~~~ 184 (199)
T PTZ00056 117 NTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLGVKDYQ 184 (199)
T ss_pred ccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Confidence 1223 44455 68999999999989999999999988877643
No 110
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=99.28 E-value=5.5e-11 Score=84.82 Aligned_cols=105 Identities=19% Similarity=0.315 Sum_probs=78.6
Q ss_pred CCCceEEeCc-ccHHHHhccC--CccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCc
Q 031790 29 SKSEVITLTP-DTFTDKVKEK--DTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHS 105 (153)
Q Consensus 29 ~~~~~~~l~~-~~~~~~~~~~--~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~ 105 (153)
..+.+.+++. +.|.+.+.+. +..|+|+||.+.++.|..+...+..+|..|+. +.|++|..+..+ +..+|.+..
T Consensus 123 ~fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~---vKFvkI~a~~~~-~~~~f~~~~ 198 (265)
T PF02114_consen 123 RFGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE---VKFVKIRASKCP-ASENFPDKN 198 (265)
T ss_dssp ---SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT---SEEEEEEECGCC-TTTTS-TTC
T ss_pred cCceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc---eEEEEEehhccC-cccCCcccC
Confidence 3567888864 7788888553 34689999999999999999999999999997 999999987655 788999999
Q ss_pred cceEEEEeCCeeeeeecCC-------CCHHHHHHHHHHH
Q 031790 106 YPTFKVFYDGKEVAKYQGP-------RDVESLKTFVLEE 137 (153)
Q Consensus 106 ~Pt~~~~~~g~~~~~~~g~-------~~~~~i~~~l~~~ 137 (153)
+|++++|++|..+..+.|. .+..++..+|.++
T Consensus 199 LPtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 199 LPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp -SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred CCEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 9999999999988887763 3455777777544
No 111
>PLN02412 probable glutathione peroxidase
Probab=99.24 E-value=1.3e-10 Score=77.99 Aligned_cols=92 Identities=14% Similarity=0.157 Sum_probs=71.0
Q ss_pred CCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC-------c-hhh----hhh---------------
Q 031790 48 KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA-------S-KTL----CSK--------------- 100 (153)
Q Consensus 48 ~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-------~-~~~----~~~--------------- 100 (153)
.+++++|.||++||++|+...|.+.++.+.+++ .++.++.|+++. . .++ +++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~-~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g 106 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKE-QGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNG 106 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhh-CCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCC
Confidence 357899999999999999999999999999986 468898887641 1 111 111
Q ss_pred ------CC-------------CCccceEEEE-eCCeeeeeecCCCCHHHHHHHHHHHHHh
Q 031790 101 ------VD-------------IHSYPTFKVF-YDGKEVAKYQGPRDVESLKTFVLEEAEK 140 (153)
Q Consensus 101 ------~~-------------v~~~Pt~~~~-~~g~~~~~~~g~~~~~~i~~~l~~~~~~ 140 (153)
|+ +...|+.+++ ++|+.+.++.|..+.+++.+.|++.++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~~ 166 (167)
T PLN02412 107 KNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLGQ 166 (167)
T ss_pred CCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence 11 3445887888 5899999999999999999999887753
No 112
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.21 E-value=2.7e-10 Score=76.96 Aligned_cols=82 Identities=12% Similarity=0.081 Sum_probs=62.0
Q ss_pred CCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEE------EEeeCCC----------------------------
Q 031790 48 KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEV------GEVDCGA---------------------------- 93 (153)
Q Consensus 48 ~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~------~~vd~~~---------------------------- 93 (153)
.+++++|.|||.||++|+.-.|.++++.+. ++.+ .-||.++
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~-----~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD 132 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA-----KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLD 132 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHc-----CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEEC
Confidence 378899999999999999999999999542 1333 3444432
Q ss_pred -chhhhhhCCCCccceE-EEEe-CCeeeeeecCCCCHHHHHHHH
Q 031790 94 -SKTLCSKVDIHSYPTF-KVFY-DGKEVAKYQGPRDVESLKTFV 134 (153)
Q Consensus 94 -~~~~~~~~~v~~~Pt~-~~~~-~g~~~~~~~g~~~~~~i~~~l 134 (153)
+..+...|++.++|+. ++++ +|+...++.|..+.+++.+++
T Consensus 133 ~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 133 DKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred CcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 1234567899999877 6664 899999999999988887743
No 113
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.16 E-value=8e-10 Score=74.30 Aligned_cols=94 Identities=19% Similarity=0.237 Sum_probs=71.0
Q ss_pred CCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC-------c----------------------hhhh
Q 031790 48 KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA-------S----------------------KTLC 98 (153)
Q Consensus 48 ~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-------~----------------------~~~~ 98 (153)
.+++++++||++||+.|....+.+.++.+.+++ .++.|+.|..+. . ..++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~-~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~ 102 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGA-KGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVA 102 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhh-CCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHH
Confidence 467899999999999999999999999999874 468888887653 1 2345
Q ss_pred hhCCCCccceEEEEe-CCeeeeee---------cCCCCHHHHHHHHHHHHHhHh
Q 031790 99 SKVDIHSYPTFKVFY-DGKEVAKY---------QGPRDVESLKTFVLEEAEKAA 142 (153)
Q Consensus 99 ~~~~v~~~Pt~~~~~-~g~~~~~~---------~g~~~~~~i~~~l~~~~~~~~ 142 (153)
+.|++..+|++++++ +|+.+... .+..+.+++.+.|...+....
T Consensus 103 ~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 156 (171)
T cd02969 103 KAYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKP 156 (171)
T ss_pred HHcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCC
Confidence 678999999999996 77665332 122456788888877766443
No 114
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.16 E-value=2.5e-10 Score=70.94 Aligned_cols=83 Identities=31% Similarity=0.586 Sum_probs=68.3
Q ss_pred CccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCC-CchhhhhhCC--CCccceEEEEeCCeeeeeecC--
Q 031790 49 DTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCG-ASKTLCSKVD--IHSYPTFKVFYDGKEVAKYQG-- 123 (153)
Q Consensus 49 ~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~-~~~~~~~~~~--v~~~Pt~~~~~~g~~~~~~~g-- 123 (153)
++++++.||++||++|+.+.|.+.++++.+.. .+.+..+|.. .++.....++ +..+|++.++.+|.......+
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 109 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG--DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGK 109 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC--CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhhcc
Confidence 67889999999999999999999999999885 6899999997 7889999999 999999998888866555555
Q ss_pred CCCHHHHHHH
Q 031790 124 PRDVESLKTF 133 (153)
Q Consensus 124 ~~~~~~i~~~ 133 (153)
..+...+...
T Consensus 110 ~~~~~~~~~~ 119 (127)
T COG0526 110 VLPKEALIDA 119 (127)
T ss_pred cCCHHHHHHH
Confidence 3444444433
No 115
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.14 E-value=4.1e-10 Score=64.86 Aligned_cols=68 Identities=21% Similarity=0.389 Sum_probs=52.5
Q ss_pred EEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchh----hhhhCCCCccceEEEEeCCeeeeeecCCCCHH
Q 031790 53 FVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKT----LCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVE 128 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~ 128 (153)
+..|+++||++|+.+.+.+++ . ++.+..+|+++++. +.+.+++.++|++++. |+. ..|. +.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-----~---~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~-~~~ 67 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-----K---GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGF-DPE 67 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-----C---CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeC-CHH
Confidence 567999999999999887765 1 47888899887654 4566999999999874 543 5564 778
Q ss_pred HHHHHH
Q 031790 129 SLKTFV 134 (153)
Q Consensus 129 ~i~~~l 134 (153)
.+.+++
T Consensus 68 ~i~~~i 73 (74)
T TIGR02196 68 KLDQLL 73 (74)
T ss_pred HHHHHh
Confidence 888776
No 116
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.12 E-value=1.2e-09 Score=72.26 Aligned_cols=88 Identities=13% Similarity=0.164 Sum_probs=65.4
Q ss_pred CccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCC--------Cc---hhhhhh-----------------
Q 031790 49 DTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCG--------AS---KTLCSK----------------- 100 (153)
Q Consensus 49 ~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~--------~~---~~~~~~----------------- 100 (153)
+++++|.||++||++|+...|.+.++++.+++ .++.++.|+++ .. ...+++
T Consensus 22 Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~-~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~ 100 (153)
T TIGR02540 22 GKVSLVVNVASECGFTDQNYRALQELHRELGP-SHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS 100 (153)
T ss_pred CCEEEEEEeCCCCCchhhhHHHHHHHHHHHhh-CCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence 57789999999999999999999999999975 46899888852 11 111211
Q ss_pred -------CC---CCccce----EEEE-eCCeeeeeecCCCCHHHHHHHHHHH
Q 031790 101 -------VD---IHSYPT----FKVF-YDGKEVAKYQGPRDVESLKTFVLEE 137 (153)
Q Consensus 101 -------~~---v~~~Pt----~~~~-~~g~~~~~~~g~~~~~~i~~~l~~~ 137 (153)
|. ..+.|+ .+++ ++|+.+.++.|..+.+++.+.|++.
T Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 101 EAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred CCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHh
Confidence 11 124685 4455 6899999999999999988888654
No 117
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.10 E-value=1.7e-09 Score=78.33 Aligned_cols=110 Identities=24% Similarity=0.375 Sum_probs=77.9
Q ss_pred CceEEeCcccHHHHhccCCccEEEEEEcCCChHHHh-----HHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCc
Q 031790 31 SEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKN-----LGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHS 105 (153)
Q Consensus 31 ~~~~~l~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~-----~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~ 105 (153)
..+..++..||.+.+++. ...+|+||.|--..-.. |...+-+++...-...++.|+.||..++..+++++|+..
T Consensus 34 DRVi~LneKNfk~~lKky-d~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~E 112 (383)
T PF01216_consen 34 DRVIDLNEKNFKRALKKY-DVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVEE 112 (383)
T ss_dssp --CEEE-TTTHHHHHHH--SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--S
T ss_pred cceEEcchhHHHHHHHhh-cEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCccc
Confidence 458999999999988754 45577788775322211 223344555555456789999999999999999999999
Q ss_pred cceEEEEeCCeeeeeecCCCCHHHHHHHHHHHHHhHh
Q 031790 106 YPTFKVFYDGKEVAKYQGPRDVESLKTFVLEEAEKAA 142 (153)
Q Consensus 106 ~Pt~~~~~~g~~~~~~~g~~~~~~i~~~l~~~~~~~~ 142 (153)
.+++++|++|..+ .|.|.++++.+..||...++.+.
T Consensus 113 ~~SiyVfkd~~~I-EydG~~saDtLVeFl~dl~edPV 148 (383)
T PF01216_consen 113 EGSIYVFKDGEVI-EYDGERSADTLVEFLLDLLEDPV 148 (383)
T ss_dssp TTEEEEEETTEEE-EE-S--SHHHHHHHHHHHHSSSE
T ss_pred cCcEEEEECCcEE-EecCccCHHHHHHHHHHhcccch
Confidence 9999999999877 77899999999999999887554
No 118
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=99.08 E-value=2.1e-09 Score=62.71 Aligned_cols=72 Identities=26% Similarity=0.436 Sum_probs=54.8
Q ss_pred EEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEeCCeeeeeecC-CCCHHHHHHH
Q 031790 55 KFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQG-PRDVESLKTF 133 (153)
Q Consensus 55 ~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g-~~~~~~i~~~ 133 (153)
.+++++|++|..+...+++++..+. +.+-.+|..+.+++ .+|++.++|++++ ||+. ++.| ..+.+++.++
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~----i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~~--~~~G~~p~~~el~~~ 74 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG----IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGKV--VFVGRVPSKEELKEL 74 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT----EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTEE--EEESS--HHHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC----CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCEE--EEEecCCCHHHHHHH
Confidence 3468889999999999999988773 55666666666666 9999999999966 7763 4788 6788899888
Q ss_pred HH
Q 031790 134 VL 135 (153)
Q Consensus 134 l~ 135 (153)
|+
T Consensus 75 l~ 76 (76)
T PF13192_consen 75 LE 76 (76)
T ss_dssp HH
T ss_pred hC
Confidence 74
No 119
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.07 E-value=7e-10 Score=73.23 Aligned_cols=83 Identities=18% Similarity=0.213 Sum_probs=61.0
Q ss_pred CccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC-------ch----hhhhh-----------------
Q 031790 49 DTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA-------SK----TLCSK----------------- 100 (153)
Q Consensus 49 ~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-------~~----~~~~~----------------- 100 (153)
++++++.||++||+ |+...|.++++++.+++ .++.++.|+++. .+ ..+++
T Consensus 22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~-~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~~ 99 (152)
T cd00340 22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKD-RGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNGE 99 (152)
T ss_pred CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcC-CCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccCC
Confidence 67899999999999 99999999999999874 468888887531 11 11211
Q ss_pred -----CC--CCccc-----------eEEEE-eCCeeeeeecCCCCHHHHHHH
Q 031790 101 -----VD--IHSYP-----------TFKVF-YDGKEVAKYQGPRDVESLKTF 133 (153)
Q Consensus 101 -----~~--v~~~P-----------t~~~~-~~g~~~~~~~g~~~~~~i~~~ 133 (153)
|+ +.++| +.+++ ++|+.+.++.|..+.+++.+.
T Consensus 100 ~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 100 NAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred CCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 11 23456 45566 599999999999888877653
No 120
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.05 E-value=2.1e-09 Score=69.77 Aligned_cols=85 Identities=13% Similarity=0.084 Sum_probs=67.1
Q ss_pred CccEEEEEE-cCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC---------------------chhhhhhCCCCcc
Q 031790 49 DTAWFVKFC-VPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA---------------------SKTLCSKVDIHSY 106 (153)
Q Consensus 49 ~~~vlv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~---------------------~~~~~~~~~v~~~ 106 (153)
+++++|.|| +.||+.|....+.+.++.+.+.+ .++.++.|..+. +..+++.|++...
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKA-LGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHH-CCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 678899999 68999999999999999888864 457777776653 2345677888888
Q ss_pred ---------ceEEEEe-CCeeeeeecCCCCHHHHHHHH
Q 031790 107 ---------PTFKVFY-DGKEVAKYQGPRDVESLKTFV 134 (153)
Q Consensus 107 ---------Pt~~~~~-~g~~~~~~~g~~~~~~i~~~l 134 (153)
|+.++++ +|+....+.|....+++.+.+
T Consensus 102 ~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred cccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 8998886 789889999988777776654
No 121
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=99.04 E-value=1.5e-09 Score=71.62 Aligned_cols=101 Identities=13% Similarity=0.166 Sum_probs=60.9
Q ss_pred cccHHHHhccCCccEEEEEEcCCChHHHhHHHHH---HHHHHHhcCCCCeEEEEeeCCCchhhhhhC--------CCCcc
Q 031790 38 PDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLW---EDLGKAMEGDDEIEVGEVDCGASKTLCSKV--------DIHSY 106 (153)
Q Consensus 38 ~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~ 106 (153)
.+.++.. ++.+++++|.++.+||++|+.|.... .++++.+.. ++.-+++|.++.+++.+.| +..|+
T Consensus 27 ~ea~~~A-k~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~--~FI~VkvDree~Pdid~~y~~~~~~~~~~gGw 103 (163)
T PF03190_consen 27 EEALEKA-KKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR--NFIPVKVDREERPDIDKIYMNAVQAMSGSGGW 103 (163)
T ss_dssp HHHHHHH-HHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH--H-EEEEEETTT-HHHHHHHHHHHHHHHS---S
T ss_pred HHHHHHH-HhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC--CEEEEEeccccCccHHHHHHHHHHHhcCCCCC
Confidence 3444444 45788999999999999999998744 456666654 7999999999999998877 78899
Q ss_pred ceEEEEe-CCeeeeeecCC-----CCHHHHHHHHHHHHHhH
Q 031790 107 PTFKVFY-DGKEVAKYQGP-----RDVESLKTFVLEEAEKA 141 (153)
Q Consensus 107 Pt~~~~~-~g~~~~~~~g~-----~~~~~i~~~l~~~~~~~ 141 (153)
|+.+++. +|+++...+.. .....+.+.+.+.....
T Consensus 104 Pl~vfltPdg~p~~~~tY~P~~~~~g~~~f~~~l~~i~~~w 144 (163)
T PF03190_consen 104 PLTVFLTPDGKPFFGGTYFPPEDRYGRPGFLQLLERIAELW 144 (163)
T ss_dssp SEEEEE-TTS-EEEEESS--SS-BTTB--HHHHHHHHHHHH
T ss_pred CceEEECCCCCeeeeeeecCCCCCCCCccHHHHHHHHHHHH
Confidence 9999885 77766432211 11235666665554433
No 122
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.01 E-value=2.4e-09 Score=62.29 Aligned_cols=69 Identities=19% Similarity=0.312 Sum_probs=48.8
Q ss_pred EEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhh-----CCCCccceEEEEeCCeeeeeecCCCCH
Q 031790 53 FVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSK-----VDIHSYPTFKVFYDGKEVAKYQGPRDV 127 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~-----~~v~~~Pt~~~~~~g~~~~~~~g~~~~ 127 (153)
++.||++||++|+.+.+.+++. ++.+..+|+++++..... +++.++|++ ++.+|..+. ..+.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~--------~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~----~~~~ 68 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL--------GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT----NPSA 68 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc--------CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec----CCCH
Confidence 6789999999999999887654 244567888777665554 489999997 567775432 4455
Q ss_pred HHHHHHH
Q 031790 128 ESLKTFV 134 (153)
Q Consensus 128 ~~i~~~l 134 (153)
.++.+.|
T Consensus 69 ~~~~~~l 75 (77)
T TIGR02200 69 AQVKAKL 75 (77)
T ss_pred HHHHHHh
Confidence 5665544
No 123
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=99.00 E-value=2.7e-09 Score=59.05 Aligned_cols=60 Identities=27% Similarity=0.595 Sum_probs=50.2
Q ss_pred EEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhh---hCCCCccceEEEEeCC
Q 031790 53 FVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCS---KVDIHSYPTFKVFYDG 115 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~---~~~v~~~Pt~~~~~~g 115 (153)
++.||++||++|+.+.+.+.++ +... .++.+..+|++....... .+++.++|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLN--KGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhC--CCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4789999999999999999988 3222 369999999988776654 7899999999999876
No 124
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.00 E-value=6.4e-09 Score=70.75 Aligned_cols=90 Identities=13% Similarity=0.102 Sum_probs=64.9
Q ss_pred CccE-EEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC----c----hh----hhhh---------------
Q 031790 49 DTAW-FVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA----S----KT----LCSK--------------- 100 (153)
Q Consensus 49 ~~~v-lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~----~----~~----~~~~--------------- 100 (153)
++++ ++.+|++||++|+...|.++++++.+++ .++.++.|+++. . .+ +.++
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~-~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g 118 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKS-QGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNG 118 (183)
T ss_pred CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhh-CCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecCC
Confidence 4543 5566999999999999999999999975 468898887631 0 00 0111
Q ss_pred ---------------------CCCCccce----EEEEeCCeeeeeecCCCCHHHHHHHHHHHHH
Q 031790 101 ---------------------VDIHSYPT----FKVFYDGKEVAKYQGPRDVESLKTFVLEEAE 139 (153)
Q Consensus 101 ---------------------~~v~~~Pt----~~~~~~g~~~~~~~g~~~~~~i~~~l~~~~~ 139 (153)
+++.++|+ +++=++|+.+.++.|..+.+++.+.|++.++
T Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 119 ENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLLN 182 (183)
T ss_pred CCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHhc
Confidence 13457794 4444689999999999998888888877653
No 125
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.99 E-value=1.4e-09 Score=70.93 Aligned_cols=71 Identities=20% Similarity=0.459 Sum_probs=55.9
Q ss_pred CCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCC-CCeEEEEeeCCCc-------------------------hhhhhhC
Q 031790 48 KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGD-DEIEVGEVDCGAS-------------------------KTLCSKV 101 (153)
Q Consensus 48 ~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~vd~~~~-------------------------~~~~~~~ 101 (153)
.++.+.++|.|.||++|+.+-|.+.++++..+.+ ..+-++-|+-|.+ ++++++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 4688999999999999999999999999888762 2366666655432 3456789
Q ss_pred CCCccceEEEEe-CCeee
Q 031790 102 DIHSYPTFKVFY-DGKEV 118 (153)
Q Consensus 102 ~v~~~Pt~~~~~-~g~~~ 118 (153)
+|.++|++.+.+ +|..+
T Consensus 112 ~v~~iP~l~i~~~dG~~v 129 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVV 129 (157)
T ss_pred ccCcCceeEEecCCCCEe
Confidence 999999999986 77655
No 126
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.97 E-value=8.9e-09 Score=71.62 Aligned_cols=80 Identities=13% Similarity=0.186 Sum_probs=64.8
Q ss_pred CccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCC-----------CchhhhhhCCCCccceEEEEe-CC-
Q 031790 49 DTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCG-----------ASKTLCSKVDIHSYPTFKVFY-DG- 115 (153)
Q Consensus 49 ~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~-----------~~~~~~~~~~v~~~Pt~~~~~-~g- 115 (153)
++.-+++||.+.|++|+.+.|.+..+++.+. +.+..|++| .+.+++++++|..+|+++++. ++
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg----~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~ 195 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKYG----FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTK 195 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHhC----CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCC
Confidence 4556999999999999999999999999984 555555555 357889999999999999996 34
Q ss_pred eeeeeecCCCCHHHHHH
Q 031790 116 KEVAKYQGPRDVESLKT 132 (153)
Q Consensus 116 ~~~~~~~g~~~~~~i~~ 132 (153)
+......|..+.++|.+
T Consensus 196 ~~~pv~~G~~s~~~L~~ 212 (215)
T PF13728_consen 196 KWYPVSQGFMSLDELED 212 (215)
T ss_pred eEEEEeeecCCHHHHHH
Confidence 45555689999888865
No 127
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.95 E-value=1.6e-08 Score=63.74 Aligned_cols=92 Identities=12% Similarity=0.090 Sum_probs=70.4
Q ss_pred ccCCccEEEEEEcC----CChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC--chhhhhhCCCCccceEEEEe--C--C
Q 031790 46 KEKDTAWFVKFCVP----WCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA--SKTLCSKVDIHSYPTFKVFY--D--G 115 (153)
Q Consensus 46 ~~~~~~vlv~f~~~----~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~--~--g 115 (153)
+++.|.++|++|++ ||..|+.... =+++.+.+.+ ++.+...|++. ..+++..+++.++|++.++. + .
T Consensus 14 k~e~K~llVylhs~~~~~~~~fc~~~l~-~~~v~~~ln~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~ 90 (116)
T cd02991 14 KQELRFLLVYLHGDDHQDTDEFCRNTLC-APEVIEYINT--RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRM 90 (116)
T ss_pred HhhCCEEEEEEeCCCCccHHHHHHHHcC-CHHHHHHHHc--CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCce
Confidence 45688999999999 8888854321 0344444443 79999999864 46789999999999999982 3 3
Q ss_pred eeeeeecCCCCHHHHHHHHHHHHHh
Q 031790 116 KEVAKYQGPRDVESLKTFVLEEAEK 140 (153)
Q Consensus 116 ~~~~~~~g~~~~~~i~~~l~~~~~~ 140 (153)
+.+.+..|..+.+++...|....+.
T Consensus 91 ~vv~~i~G~~~~~~ll~~L~~~~~~ 115 (116)
T cd02991 91 TIVGRLEGLIQPEDLINRLTFIMDA 115 (116)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 4678999999999999999877653
No 128
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.93 E-value=1.8e-08 Score=63.94 Aligned_cols=70 Identities=20% Similarity=0.327 Sum_probs=56.8
Q ss_pred CCccEEEEEEcC-CChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCc---------------------hhhhhhCCCC-
Q 031790 48 KDTAWFVKFCVP-WCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGAS---------------------KTLCSKVDIH- 104 (153)
Q Consensus 48 ~~~~vlv~f~~~-~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~---------------------~~~~~~~~v~- 104 (153)
.+++++|.||+. ||++|+...+.+.++.+.++. .++.++.|..+.. ..+++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~-~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 102 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKD-KGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIED 102 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT-TTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEE
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhcc-ceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCcc
Confidence 457889999999 999999999999999998884 4688988887642 3456778888
Q ss_pred -----ccceEEEEe-CCeee
Q 031790 105 -----SYPTFKVFY-DGKEV 118 (153)
Q Consensus 105 -----~~Pt~~~~~-~g~~~ 118 (153)
.+|+++++. +|+..
T Consensus 103 ~~~~~~~p~~~lid~~g~I~ 122 (124)
T PF00578_consen 103 EKDTLALPAVFLIDPDGKIR 122 (124)
T ss_dssp TTTSEESEEEEEEETTSBEE
T ss_pred ccCCceEeEEEEECCCCEEE
Confidence 999999997 45443
No 129
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.92 E-value=9.7e-08 Score=64.56 Aligned_cols=107 Identities=21% Similarity=0.265 Sum_probs=87.8
Q ss_pred cCCCceEEeCcccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCC--c
Q 031790 28 HSKSEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIH--S 105 (153)
Q Consensus 28 ~~~~~~~~l~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~--~ 105 (153)
...+.+.+++.+++.........++++.|..........+...++++++.+++ .+.|+.+|++..+.+++.+++. .
T Consensus 74 ~~~P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~~f~~~d~~~~~~~~~~~~i~~~~ 151 (184)
T PF13848_consen 74 NSFPLVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKG--KINFVYVDADDFPRLLKYFGIDEDD 151 (184)
T ss_dssp HSSTSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTT--TSEEEEEETTTTHHHHHHTTTTTSS
T ss_pred hccccccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCC--eEEEEEeehHHhHHHHHHcCCCCcc
Confidence 34667999999999998865445578888877788889999999999999987 7999999999889999999998 8
Q ss_pred cceEEEEe--CCeeeeeecCCCCHHHHHHHHHH
Q 031790 106 YPTFKVFY--DGKEVAKYQGPRDVESLKTFVLE 136 (153)
Q Consensus 106 ~Pt~~~~~--~g~~~~~~~g~~~~~~i~~~l~~ 136 (153)
+|++++++ +++......|..+.+.+.+|+++
T Consensus 152 ~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 152 LPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp SSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred CCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 99999997 34433334788999999999864
No 130
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.88 E-value=7e-09 Score=61.40 Aligned_cols=60 Identities=23% Similarity=0.366 Sum_probs=45.2
Q ss_pred EEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCch-----hhhhhCCCCccceEEEEeCCeee
Q 031790 53 FVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASK-----TLCSKVDIHSYPTFKVFYDGKEV 118 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-----~~~~~~~v~~~Pt~~~~~~g~~~ 118 (153)
++.|+++||++|+.+.+.+++.. .+. .+.++.+|.+++. .+.+.+++.++|++++ +|+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~--~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~i 65 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP--AYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGKFI 65 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC--CCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence 46799999999999999998876 222 4778888876543 2566679999999854 67544
No 131
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.86 E-value=3.4e-08 Score=77.79 Aligned_cols=95 Identities=17% Similarity=0.240 Sum_probs=74.1
Q ss_pred ceEEeCcccHHHHhccCCccE-EEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEE
Q 031790 32 EVITLTPDTFTDKVKEKDTAW-FVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFK 110 (153)
Q Consensus 32 ~~~~l~~~~~~~~~~~~~~~v-lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 110 (153)
.-..++++..++ +++=++++ +-.|.+++|++|......+++++...+ ++..-.+|....++++++|+|.++|+++
T Consensus 459 ~~~~l~~~~~~~-i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~---~i~~~~i~~~~~~~~~~~~~v~~vP~~~ 534 (555)
T TIGR03143 459 PGQPLGEELLEK-IKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP---NVEAEMIDVSHFPDLKDEYGIMSVPAIV 534 (555)
T ss_pred CCCCCCHHHHHH-HHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC---CceEEEEECcccHHHHHhCCceecCEEE
Confidence 344555444443 43334554 556689999999999988888888766 4999999999999999999999999998
Q ss_pred EEeCCeeeeeecCCCCHHHHHHHH
Q 031790 111 VFYDGKEVAKYQGPRDVESLKTFV 134 (153)
Q Consensus 111 ~~~~g~~~~~~~g~~~~~~i~~~l 134 (153)
+ ||+.. +.|..+.+++.++|
T Consensus 535 i--~~~~~--~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 535 V--DDQQV--YFGKKTIEEMLELI 554 (555)
T ss_pred E--CCEEE--EeeCCCHHHHHHhh
Confidence 8 66644 56988999998876
No 132
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.86 E-value=2.5e-08 Score=62.76 Aligned_cols=77 Identities=21% Similarity=0.398 Sum_probs=51.0
Q ss_pred ccHHHHhcc---CCccEEEEEEc-------CCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCch-------hhhh--
Q 031790 39 DTFTDKVKE---KDTAWFVKFCV-------PWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASK-------TLCS-- 99 (153)
Q Consensus 39 ~~~~~~~~~---~~~~vlv~f~~-------~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-------~~~~-- 99 (153)
++|.+.+.. ++++++++|++ +|||.|....|.+++.....+. +..++.+.+..-+ ..-.
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~--~~~lv~v~VG~r~~Wkdp~n~fR~~p 83 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE--NARLVYVEVGDRPEWKDPNNPFRTDP 83 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST--TEEEEEEE---HHHHC-TTSHHHH--
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC--CceEEEEEcCCHHHhCCCCCCceEcc
Confidence 455555543 56788999985 4999999999999998887655 6888888775321 2222
Q ss_pred hCCCCccceEEEEeCCee
Q 031790 100 KVDIHSYPTFKVFYDGKE 117 (153)
Q Consensus 100 ~~~v~~~Pt~~~~~~g~~ 117 (153)
++++.++||++-+.+++.
T Consensus 84 ~~~l~~IPTLi~~~~~~r 101 (119)
T PF06110_consen 84 DLKLKGIPTLIRWETGER 101 (119)
T ss_dssp CC---SSSEEEECTSS-E
T ss_pred eeeeeecceEEEECCCCc
Confidence 599999999999987643
No 133
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.85 E-value=5.3e-08 Score=65.62 Aligned_cols=88 Identities=11% Similarity=0.029 Sum_probs=64.3
Q ss_pred CccEEEEEE-cCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCc----------------------------hhhhh
Q 031790 49 DTAWFVKFC-VPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGAS----------------------------KTLCS 99 (153)
Q Consensus 49 ~~~vlv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~----------------------------~~~~~ 99 (153)
+++++|.|| +.||++|....+.+.++++.+.+ .++.++.|..+.. ..+++
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKK-LNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 478899999 89999999999999999998864 3577777765531 12345
Q ss_pred hCCCC------ccceEEEEe-CCeeeeeecCC----CCHHHHHHHHHHH
Q 031790 100 KVDIH------SYPTFKVFY-DGKEVAKYQGP----RDVESLKTFVLEE 137 (153)
Q Consensus 100 ~~~v~------~~Pt~~~~~-~g~~~~~~~g~----~~~~~i~~~l~~~ 137 (153)
.|++. ..|+.++++ +|+....+.+. .+.+++.+.|+..
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 67775 567888886 78777777443 3566777777554
No 134
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.84 E-value=2.2e-08 Score=64.23 Aligned_cols=74 Identities=23% Similarity=0.369 Sum_probs=47.5
Q ss_pred CCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhC---CCCccceEEEEe-CCeeeeeecC
Q 031790 48 KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKV---DIHSYPTFKVFY-DGKEVAKYQG 123 (153)
Q Consensus 48 ~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~---~v~~~Pt~~~~~-~g~~~~~~~g 123 (153)
.+...++.|..+|||.|+...|.+.++++..++ +.+-.+..++++++..+| +..++|++++++ +|+.+.++..
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~---i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~wge 116 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANPN---IEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRWGE 116 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TT---EEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEEES
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCCC---CeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEEcC
Confidence 445568889999999999999999999998764 666555556666666554 678999999996 5677655544
Q ss_pred C
Q 031790 124 P 124 (153)
Q Consensus 124 ~ 124 (153)
.
T Consensus 117 r 117 (129)
T PF14595_consen 117 R 117 (129)
T ss_dssp S
T ss_pred C
Confidence 3
No 135
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.84 E-value=4.4e-08 Score=58.31 Aligned_cols=76 Identities=25% Similarity=0.397 Sum_probs=55.7
Q ss_pred EEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCch----hhhhhCC--CCccceEEEEeCCeeeeeecCCC
Q 031790 52 WFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASK----TLCSKVD--IHSYPTFKVFYDGKEVAKYQGPR 125 (153)
Q Consensus 52 vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~--v~~~Pt~~~~~~g~~~~~~~g~~ 125 (153)
-+..|+.+||++|++....++++...+. ++.+..+|+++++ ++.+..+ +..+|++++ +|+.+.
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~---~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~ig------ 70 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD---DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHIG------ 70 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc---CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEEc------
Confidence 3778999999999999999999987654 4888888887643 4444343 589999864 776542
Q ss_pred CHHHHHHHHHHHH
Q 031790 126 DVESLKTFVLEEA 138 (153)
Q Consensus 126 ~~~~i~~~l~~~~ 138 (153)
..+++.+++...+
T Consensus 71 g~~~~~~~~~~~~ 83 (85)
T PRK11200 71 GCTDFEAYVKENL 83 (85)
T ss_pred CHHHHHHHHHHhc
Confidence 3477777776654
No 136
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.82 E-value=7.7e-08 Score=65.67 Aligned_cols=87 Identities=15% Similarity=0.021 Sum_probs=62.3
Q ss_pred CccEEEEEE-cCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC-------------------------chhhhhhCC
Q 031790 49 DTAWFVKFC-VPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA-------------------------SKTLCSKVD 102 (153)
Q Consensus 49 ~~~vlv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-------------------------~~~~~~~~~ 102 (153)
+++++|+|| +.||+.|....+.+.+..+.+.+ .++.++.|..+. +..+++.|+
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~-~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKK-LGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHh-cCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 568899999 99999999999999999888864 356666666542 224556788
Q ss_pred CC------ccceEEEEe-CCeeeeeecC----CCCHHHHHHHHHH
Q 031790 103 IH------SYPTFKVFY-DGKEVAKYQG----PRDVESLKTFVLE 136 (153)
Q Consensus 103 v~------~~Pt~~~~~-~g~~~~~~~g----~~~~~~i~~~l~~ 136 (153)
+. ..|+.+++. +|+....+.+ ..+.+++.+.|+.
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA 154 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 76 468888885 7876655432 2366777776643
No 137
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.81 E-value=9.3e-08 Score=63.12 Aligned_cols=86 Identities=9% Similarity=0.071 Sum_probs=62.4
Q ss_pred CCccEEEEEEcC-CChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCc---------------------hhhhhhCCCCc
Q 031790 48 KDTAWFVKFCVP-WCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGAS---------------------KTLCSKVDIHS 105 (153)
Q Consensus 48 ~~~~vlv~f~~~-~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~---------------------~~~~~~~~v~~ 105 (153)
.+++++|.||+. ||+.|....+.+.++.+.+.+ .++.++.|+.+.. ..+++.|++..
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~-~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~ 107 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKK-AGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWG 107 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHH-CCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCc
Confidence 356889999975 788999999999999888865 4688888876532 23456777765
Q ss_pred c------------ceEEEEe-CCeeeeeecCCCCHHHHHHHH
Q 031790 106 Y------------PTFKVFY-DGKEVAKYQGPRDVESLKTFV 134 (153)
Q Consensus 106 ~------------Pt~~~~~-~g~~~~~~~g~~~~~~i~~~l 134 (153)
. |+.++++ +|+....+.|....+.+.+.+
T Consensus 108 ~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~~~ 149 (154)
T PRK09437 108 EKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDVVL 149 (154)
T ss_pred ccccccccccCcceEEEEECCCCEEEEEEcCCCcchhHHHHH
Confidence 4 5666775 899888899876666544443
No 138
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.80 E-value=8.7e-08 Score=62.62 Aligned_cols=43 Identities=16% Similarity=0.144 Sum_probs=34.1
Q ss_pred ccEEEEE-EcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031790 50 TAWFVKF-CVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA 93 (153)
Q Consensus 50 ~~vlv~f-~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~ 93 (153)
++++|.| ++.||+.|+...+.+.++.+.+.+ .++.++.|+.+.
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~-~~v~vv~V~~~~ 67 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDA-LGVELVAVGPES 67 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHh-cCeEEEEEeCCC
Confidence 4445555 599999999999999999998864 368888888764
No 139
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.79 E-value=1.1e-07 Score=63.73 Aligned_cols=71 Identities=7% Similarity=0.011 Sum_probs=54.8
Q ss_pred CccEEEEEEcCC-ChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC-----------------------chhhhhhCCCC
Q 031790 49 DTAWFVKFCVPW-CKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA-----------------------SKTLCSKVDIH 104 (153)
Q Consensus 49 ~~~vlv~f~~~~-C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-----------------------~~~~~~~~~v~ 104 (153)
++++++.||+.| |++|....+.+.+.++.+. ++.++.|..+. ...+++.|++.
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~---~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~ 120 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELD---NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVA 120 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC---CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCe
Confidence 568899999999 9999999999999988874 47777776653 12456778888
Q ss_pred ccc---------eEEEEe-CCeeeeeec
Q 031790 105 SYP---------TFKVFY-DGKEVAKYQ 122 (153)
Q Consensus 105 ~~P---------t~~~~~-~g~~~~~~~ 122 (153)
..| +.+++. +|+....+.
T Consensus 121 ~~~~~~~g~~~r~tfvId~~G~I~~~~~ 148 (167)
T PRK00522 121 IAEGPLKGLLARAVFVLDENNKVVYSEL 148 (167)
T ss_pred ecccccCCceeeEEEEECCCCeEEEEEE
Confidence 777 777775 787766653
No 140
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.78 E-value=1.5e-07 Score=66.81 Aligned_cols=88 Identities=11% Similarity=0.134 Sum_probs=68.3
Q ss_pred CccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCc-----------hhhhhhCCCCccceEEEEe-C-C
Q 031790 49 DTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGAS-----------KTLCSKVDIHSYPTFKVFY-D-G 115 (153)
Q Consensus 49 ~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-----------~~~~~~~~v~~~Pt~~~~~-~-g 115 (153)
++.-+++||...|++|+.+.|.++.+++.+. +.+..|++|.. ...++++++..+|+++++. + +
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~yg----i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~ 225 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYG----ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQ 225 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhC----CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCC
Confidence 3456999999999999999999999999986 45555555432 4578899999999999986 4 3
Q ss_pred eeeeeecCCCCHHHHHHHHHHHHHh
Q 031790 116 KEVAKYQGPRDVESLKTFVLEEAEK 140 (153)
Q Consensus 116 ~~~~~~~g~~~~~~i~~~l~~~~~~ 140 (153)
+....-.|..+.++|.+=+...+..
T Consensus 226 ~~~pv~~G~iS~deL~~Ri~~v~~~ 250 (256)
T TIGR02739 226 KMSPLAYGFISQDELKERILNVLTQ 250 (256)
T ss_pred cEEEEeeccCCHHHHHHHHHHHHhc
Confidence 4445558999999998777666543
No 141
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.77 E-value=3.2e-07 Score=57.28 Aligned_cols=102 Identities=13% Similarity=0.219 Sum_probs=79.6
Q ss_pred ccHHHHhcc-CCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEeCCee
Q 031790 39 DTFTDKVKE-KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYDGKE 117 (153)
Q Consensus 39 ~~~~~~~~~-~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 117 (153)
...++.+.. ..+.+++-|..+|-|.|..|...+.++++...+ =..++.+|+++-+++.+.|++...|++.+|-+++.
T Consensus 12 ~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn--fa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kH 89 (142)
T KOG3414|consen 12 WEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN--FAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKH 89 (142)
T ss_pred HHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhh--ceEEEEEecchhhhhhhhhcccCCceEEEEEcCce
Confidence 445566643 578899999999999999999999999999876 46778889999999999999999999999877765
Q ss_pred eeee--cCC--------CCHHHHHHHHHHHHHhHh
Q 031790 118 VAKY--QGP--------RDVESLKTFVLEEAEKAA 142 (153)
Q Consensus 118 ~~~~--~g~--------~~~~~i~~~l~~~~~~~~ 142 (153)
+..- +|. .+++++++.++..-..+.
T Consensus 90 mkiD~gtgdn~Kin~~~~~kq~~Idiie~iyRga~ 124 (142)
T KOG3414|consen 90 MKIDLGTGDNNKINFAFEDKQEFIDIIETIYRGAR 124 (142)
T ss_pred EEEeeCCCCCceEEEEeccHHHHHHHHHHHHHhhh
Confidence 5322 332 356777777766654443
No 142
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.77 E-value=4.2e-08 Score=69.06 Aligned_cols=81 Identities=20% Similarity=0.302 Sum_probs=59.3
Q ss_pred CCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEe--------------------------------------
Q 031790 48 KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEV-------------------------------------- 89 (153)
Q Consensus 48 ~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v-------------------------------------- 89 (153)
+.+.+++.|..+.||+|+++.+.++++.+. ++.+..+
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~-----~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~ 180 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL-----GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVS 180 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC-----CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCC
Confidence 346679999999999999999988876431 1222211
Q ss_pred ------eCCCchhhhhhCCCCccceEEEEeCCeeeeeecCCCCHHHHHHHHHHH
Q 031790 90 ------DCGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFVLEE 137 (153)
Q Consensus 90 ------d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~i~~~l~~~ 137 (153)
+++++..++++++|+++|+++ +.+|+.+ .|..+.+++.++|++.
T Consensus 181 ~~~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~---~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 181 PASCDVDIADHYALGVQFGVQGTPAIV-LSNGTLV---PGYQGPKEMKAFLDEH 230 (232)
T ss_pred cccccchHHHhHHHHHHcCCccccEEE-EcCCeEe---eCCCCHHHHHHHHHHc
Confidence 111234567789999999998 6788744 8999999999999754
No 143
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.77 E-value=1.4e-07 Score=61.80 Aligned_cols=84 Identities=12% Similarity=0.107 Sum_probs=59.6
Q ss_pred ccEEEEEE-cCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC---------------------c--hhhhhhCCCCc
Q 031790 50 TAWFVKFC-VPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA---------------------S--KTLCSKVDIHS 105 (153)
Q Consensus 50 ~~vlv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~---------------------~--~~~~~~~~v~~ 105 (153)
+++++.|| ++||+.|....+.+.++++.+.+ .++.++.|+.+. . ..+++.|++..
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~-~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~ 107 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEA-AGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFD 107 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHh-CCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCcc
Confidence 67777787 89999999999999999998864 468887776653 1 34556677763
Q ss_pred ----c--ceEEEEe-CCeeeeeecCCC----CHHHHHHHH
Q 031790 106 ----Y--PTFKVFY-DGKEVAKYQGPR----DVESLKTFV 134 (153)
Q Consensus 106 ----~--Pt~~~~~-~g~~~~~~~g~~----~~~~i~~~l 134 (153)
. |+.++++ +|+....+.|.. +..++.+.|
T Consensus 108 ~~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~ 147 (149)
T cd03018 108 EDLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEAL 147 (149)
T ss_pred ccCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHh
Confidence 2 3677775 788887777753 345555544
No 144
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.75 E-value=1.2e-07 Score=74.12 Aligned_cols=102 Identities=15% Similarity=0.148 Sum_probs=77.1
Q ss_pred CceEEeCcccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEE
Q 031790 31 SEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFK 110 (153)
Q Consensus 31 ~~~~~l~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 110 (153)
+.-..++++..+....-++..-+-.|++++||+|......+++++...+ ++.+-.+|..+.++++++|++.++|+++
T Consensus 98 ~~~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~---~i~~~~id~~~~~~~~~~~~v~~VP~~~ 174 (517)
T PRK15317 98 GHPPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP---NITHTMIDGALFQDEVEARNIMAVPTVF 174 (517)
T ss_pred CCCCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC---CceEEEEEchhCHhHHHhcCCcccCEEE
Confidence 3444555444443332123334889999999999999999998888755 4999999999999999999999999997
Q ss_pred EEeCCeeeeeecCCCCHHHHHHHHHHHHH
Q 031790 111 VFYDGKEVAKYQGPRDVESLKTFVLEEAE 139 (153)
Q Consensus 111 ~~~~g~~~~~~~g~~~~~~i~~~l~~~~~ 139 (153)
+ +|+. .+.|..+.+++.+.+.+...
T Consensus 175 i--~~~~--~~~g~~~~~~~~~~~~~~~~ 199 (517)
T PRK15317 175 L--NGEE--FGQGRMTLEEILAKLDTGAA 199 (517)
T ss_pred E--CCcE--EEecCCCHHHHHHHHhcccc
Confidence 6 5553 46788898888888866433
No 145
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.75 E-value=1e-07 Score=62.07 Aligned_cols=83 Identities=8% Similarity=0.072 Sum_probs=59.7
Q ss_pred CccEEEEEEcCC-ChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCc-----------------------hhhhhhCCCC
Q 031790 49 DTAWFVKFCVPW-CKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGAS-----------------------KTLCSKVDIH 104 (153)
Q Consensus 49 ~~~vlv~f~~~~-C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-----------------------~~~~~~~~v~ 104 (153)
++++++.||+.| |++|+...+.+.++++.++ ++.++.|+.+.. ..+++.|++.
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~---~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~ 102 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLD---NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVL 102 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC---CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCe
Confidence 568899999988 6999999999999988874 478888877521 2344567765
Q ss_pred c------cceEEEEe-CCeeeeeecCC--CCHHHHHHHH
Q 031790 105 S------YPTFKVFY-DGKEVAKYQGP--RDVESLKTFV 134 (153)
Q Consensus 105 ~------~Pt~~~~~-~g~~~~~~~g~--~~~~~i~~~l 134 (153)
. .|+.+++. +|+......|. ....++.+.+
T Consensus 103 ~~~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~ 141 (143)
T cd03014 103 IKDLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAAL 141 (143)
T ss_pred eccCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHh
Confidence 3 68888886 88877777654 3344555443
No 146
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=98.74 E-value=7.9e-07 Score=55.56 Aligned_cols=107 Identities=22% Similarity=0.362 Sum_probs=79.6
Q ss_pred CCceEEeCcccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHH-HHhcCCCCeEEEEeeCC-----CchhhhhhCCC
Q 031790 30 KSEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLG-KAMEGDDEIEVGEVDCG-----ASKTLCSKVDI 103 (153)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~-~~~~~~~~~~~~~vd~~-----~~~~~~~~~~v 103 (153)
.....++++-+|++.+.. .+.++|.|-... +--.-...|.+++ +......++.++.|.+. +|.+++++|++
T Consensus 3 ~~G~v~LD~~tFdKvi~k-f~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i 79 (126)
T PF07912_consen 3 CKGCVPLDELTFDKVIPK-FKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKI 79 (126)
T ss_dssp STTSEEESTTHHHHHGGG-SSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-
T ss_pred cCceeeccceehhheecc-CceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCC
Confidence 345678899999999964 467799997654 4445567888998 55655678999999885 57899999999
Q ss_pred --CccceEEEEe-CCeeeeee--cCCCCHHHHHHHHHHHHH
Q 031790 104 --HSYPTFKVFY-DGKEVAKY--QGPRDVESLKTFVLEEAE 139 (153)
Q Consensus 104 --~~~Pt~~~~~-~g~~~~~~--~g~~~~~~i~~~l~~~~~ 139 (153)
..+|.+++|. +.+.+.+| .|..+.+++++|+.++..
T Consensus 80 ~ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~ 120 (126)
T PF07912_consen 80 DKEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTG 120 (126)
T ss_dssp SCCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred CcccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCC
Confidence 5689999998 44566677 888999999999987643
No 147
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.68 E-value=1.5e-07 Score=58.30 Aligned_cols=74 Identities=19% Similarity=0.384 Sum_probs=54.8
Q ss_pred ccHHHHhcc--CCccEEEEEEc--------CCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCc-------hhhhhhC
Q 031790 39 DTFTDKVKE--KDTAWFVKFCV--------PWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGAS-------KTLCSKV 101 (153)
Q Consensus 39 ~~~~~~~~~--~~~~vlv~f~~--------~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-------~~~~~~~ 101 (153)
+.|++.+.+ +++.++++|++ +|||.|.+..|.+.+.-+..+. ++.|+.+++.+- ..+-...
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~--~~~~v~v~VG~rp~Wk~p~n~FR~d~ 90 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE--DVHFVHVYVGNRPYWKDPANPFRKDP 90 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC--ceEEEEEEecCCCcccCCCCccccCC
Confidence 445555532 23347999985 5999999999999999886665 799999998753 2344455
Q ss_pred CC-CccceEEEEeC
Q 031790 102 DI-HSYPTFKVFYD 114 (153)
Q Consensus 102 ~v-~~~Pt~~~~~~ 114 (153)
++ .++||++-+.+
T Consensus 91 ~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 91 GILTAVPTLLRWKR 104 (128)
T ss_pred CceeecceeeEEcC
Confidence 66 89999998874
No 148
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.68 E-value=1.6e-07 Score=56.10 Aligned_cols=74 Identities=28% Similarity=0.392 Sum_probs=52.1
Q ss_pred EEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCch----hhhhhCC--CCccceEEEEeCCeeeeeecCCCC
Q 031790 53 FVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASK----TLCSKVD--IHSYPTFKVFYDGKEVAKYQGPRD 126 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~--v~~~Pt~~~~~~g~~~~~~~g~~~ 126 (153)
++.|+.+|||+|.+.+..++++..... ++.+..+|++.+. ++.+..+ ..++|++++ +|+.+ | .
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~---~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~i----g--G 70 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA---DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHV----G--G 70 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC---CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEe----c--C
Confidence 678999999999999999888765443 3777888876432 4555555 379999954 66543 2 3
Q ss_pred HHHHHHHHHHH
Q 031790 127 VESLKTFVLEE 137 (153)
Q Consensus 127 ~~~i~~~l~~~ 137 (153)
.+++.+++.+.
T Consensus 71 ~~dl~~~~~~~ 81 (86)
T TIGR02183 71 CTDFEQLVKEN 81 (86)
T ss_pred HHHHHHHHHhc
Confidence 47777777653
No 149
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.66 E-value=5.1e-07 Score=63.81 Aligned_cols=89 Identities=11% Similarity=0.061 Sum_probs=67.6
Q ss_pred CccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC---------chhhhhhCCCCccceEEEEe-C-Cee
Q 031790 49 DTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA---------SKTLCSKVDIHSYPTFKVFY-D-GKE 117 (153)
Q Consensus 49 ~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~---------~~~~~~~~~v~~~Pt~~~~~-~-g~~ 117 (153)
++.-+++||...|++|+.+.|.++.+++.+.- .+..+.+|-.- +...++++++..+|++++++ + ++.
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~--~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGL--SVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhCC--eEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence 34569999999999999999999999999864 34445555321 23466789999999999986 3 355
Q ss_pred eeeecCCCCHHHHHHHHHHHHH
Q 031790 118 VAKYQGPRDVESLKTFVLEEAE 139 (153)
Q Consensus 118 ~~~~~g~~~~~~i~~~l~~~~~ 139 (153)
...-.|..+.+++.+=+....+
T Consensus 221 ~pv~~G~iS~deL~~Ri~~v~t 242 (248)
T PRK13703 221 RPLSYGFITQDDLAKRFLNVST 242 (248)
T ss_pred EEEeeccCCHHHHHHHHHHHHh
Confidence 5566899999999877766554
No 150
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=9.3e-07 Score=63.49 Aligned_cols=113 Identities=18% Similarity=0.311 Sum_probs=86.3
Q ss_pred cCCCceEEeCcccHHHHhccCCc--cEEEEEEcC----CChHHHhHHHHHHHHHHHhcC----CC--CeEEEEeeCCCch
Q 031790 28 HSKSEVITLTPDTFTDKVKEKDT--AWFVKFCVP----WCKHCKNLGSLWEDLGKAMEG----DD--EIEVGEVDCGASK 95 (153)
Q Consensus 28 ~~~~~~~~l~~~~~~~~~~~~~~--~vlv~f~~~----~C~~C~~~~~~~~~~~~~~~~----~~--~~~~~~vd~~~~~ 95 (153)
....++..++++.|...++...+ .+++.|.|. .|.-|+....++..++..+.. .+ ++-|..||.++.+
T Consensus 37 ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p 116 (331)
T KOG2603|consen 37 TSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESP 116 (331)
T ss_pred cCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccH
Confidence 34567999999999999976543 367788764 899999999999999987743 12 5789999999999
Q ss_pred hhhhhCCCCccceEEEEeC--Ceee--eeec---CCCCHHHHHHHHHHHHHh
Q 031790 96 TLCSKVDIHSYPTFKVFYD--GKEV--AKYQ---GPRDVESLKTFVLEEAEK 140 (153)
Q Consensus 96 ~~~~~~~v~~~Pt~~~~~~--g~~~--~~~~---g~~~~~~i~~~l~~~~~~ 140 (153)
++-+.+++..+|.+++|.. |... +.+. -....|++.+|+++..+-
T Consensus 117 ~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv 168 (331)
T KOG2603|consen 117 QVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKV 168 (331)
T ss_pred HHHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhh
Confidence 9999999999999999942 2211 1111 112488999999887653
No 151
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.64 E-value=3.3e-07 Score=59.28 Aligned_cols=78 Identities=15% Similarity=0.101 Sum_probs=58.2
Q ss_pred CCccEEEEEE-cCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCc----------------------hhhhhhCCCC
Q 031790 48 KDTAWFVKFC-VPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGAS----------------------KTLCSKVDIH 104 (153)
Q Consensus 48 ~~~~vlv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~----------------------~~~~~~~~v~ 104 (153)
.+++++|.|| +.||+.|....+.+.++++.++. .++.++.|..+.. ..+.+.|++.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~-~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~ 99 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAK-GGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVL 99 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCc
Confidence 4678899999 78999999999999999988853 3677877776531 2345667777
Q ss_pred ccc---------eEEEEe-CCeeeeeecCCCC
Q 031790 105 SYP---------TFKVFY-DGKEVAKYQGPRD 126 (153)
Q Consensus 105 ~~P---------t~~~~~-~g~~~~~~~g~~~ 126 (153)
..| +.++++ +|+.+..+.|...
T Consensus 100 ~~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 100 IEKSAGGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred cccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence 665 677776 6888888777654
No 152
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.64 E-value=4.2e-06 Score=52.98 Aligned_cols=100 Identities=13% Similarity=0.208 Sum_probs=74.8
Q ss_pred ccHHHHh-ccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccce-EEEEeCCe
Q 031790 39 DTFTDKV-KEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPT-FKVFYDGK 116 (153)
Q Consensus 39 ~~~~~~~-~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt-~~~~~~g~ 116 (153)
-..++.+ .+.++.+++-|..+|-+.|..+.+.+.++++..++ -..++.+|.++-+++.+.|.+. -|. +.+|-+++
T Consensus 9 ~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~--~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnk 85 (133)
T PF02966_consen 9 WHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKN--FAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNK 85 (133)
T ss_dssp HHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT--TEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTE
T ss_pred chHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhc--ceEEEEEEcccchhhhcccccC-CCeEEEEEecCe
Confidence 3455555 44688999999999999999999999999999987 5888999999999999999999 776 55555776
Q ss_pred eeeeecCC----------CCHHHHHHHHHHHHHhH
Q 031790 117 EVAKYQGP----------RDVESLKTFVLEEAEKA 141 (153)
Q Consensus 117 ~~~~~~g~----------~~~~~i~~~l~~~~~~~ 141 (153)
.+..-.|. .+.+++...++..-..+
T Consensus 86 hm~vD~GtgnnnKin~~~~~kqe~iDiie~iyrga 120 (133)
T PF02966_consen 86 HMMVDFGTGNNNKINWAFEDKQEFIDIIETIYRGA 120 (133)
T ss_dssp EEEEESSSSSSSSBCS--SCHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCccEEEEEcCcHHHHHHHHHHHHHHh
Confidence 55333332 35778888876655433
No 153
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.63 E-value=7.9e-07 Score=60.64 Aligned_cols=89 Identities=15% Similarity=0.027 Sum_probs=64.6
Q ss_pred CccEEEEEE-cCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC-------------------------chhhhhhCC
Q 031790 49 DTAWFVKFC-VPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA-------------------------SKTLCSKVD 102 (153)
Q Consensus 49 ~~~vlv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-------------------------~~~~~~~~~ 102 (153)
++++++.|| ++||+.|....+.+.+..+.+.+ .++.++.|..+. +..+++.|+
T Consensus 31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~-~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQK-LGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 467899999 99999999999999999888864 356666665542 235667888
Q ss_pred C----Ccc--ceEEEEe-CCeeeeeecC----CCCHHHHHHHHHHHH
Q 031790 103 I----HSY--PTFKVFY-DGKEVAKYQG----PRDVESLKTFVLEEA 138 (153)
Q Consensus 103 v----~~~--Pt~~~~~-~g~~~~~~~g----~~~~~~i~~~l~~~~ 138 (153)
+ .++ |+.++++ +|+....+.. .++.+++.+.|+...
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq 156 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ 156 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhh
Confidence 7 355 9999996 7776544422 257888888885554
No 154
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=2.3e-08 Score=68.47 Aligned_cols=81 Identities=14% Similarity=0.329 Sum_probs=72.3
Q ss_pred CCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEeCCeeeeeecCCCCH
Q 031790 48 KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDV 127 (153)
Q Consensus 48 ~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~ 127 (153)
.++..+++||++||..|..+...++.+++..+ ++.|++.+.++.++++..+.+...|.+.++..|+.+.+..|..+.
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~---~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~~ 92 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK---NAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSGADPP 92 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh---hheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhccCcH
Confidence 67788999999999999999999999999884 599999999999999999999999999999999988888887654
Q ss_pred HHHH
Q 031790 128 ESLK 131 (153)
Q Consensus 128 ~~i~ 131 (153)
....
T Consensus 93 ~~~~ 96 (227)
T KOG0911|consen 93 FLVS 96 (227)
T ss_pred HHHH
Confidence 4443
No 155
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.62 E-value=3e-07 Score=52.56 Aligned_cols=67 Identities=18% Similarity=0.320 Sum_probs=45.9
Q ss_pred EEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhh----CCCCccceEEEEeCCeeeeeecCCCCHH
Q 031790 53 FVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSK----VDIHSYPTFKVFYDGKEVAKYQGPRDVE 128 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~----~~v~~~Pt~~~~~~g~~~~~~~g~~~~~ 128 (153)
++.|+++||++|..+...+++. ++.+..+|++.++...+. .++.++|++++ +|+ ...|. +.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~--------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~---~i~g~-~~~ 67 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER--------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE---HLSGF-RPD 67 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC--------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE---EEecC-CHH
Confidence 5789999999999988777652 366677777766554443 36889999975 453 33443 556
Q ss_pred HHHHH
Q 031790 129 SLKTF 133 (153)
Q Consensus 129 ~i~~~ 133 (153)
.+.++
T Consensus 68 ~l~~~ 72 (73)
T cd02976 68 KLRAL 72 (73)
T ss_pred HHHhh
Confidence 66654
No 156
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.62 E-value=6.7e-07 Score=61.78 Aligned_cols=90 Identities=6% Similarity=0.003 Sum_probs=63.3
Q ss_pred CccEE-EEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC---------------------------chhhhhh
Q 031790 49 DTAWF-VKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA---------------------------SKTLCSK 100 (153)
Q Consensus 49 ~~~vl-v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~---------------------------~~~~~~~ 100 (153)
++.++ +.|+++||+.|....+.+.+.++.+++ .++.++.|.++. +..+++.
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~-~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKK-LGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 34444 468999999999999999998888864 356666665542 2244567
Q ss_pred CCCC------ccceEEEEe-CCeeeeee----cCCCCHHHHHHHHHHHHH
Q 031790 101 VDIH------SYPTFKVFY-DGKEVAKY----QGPRDVESLKTFVLEEAE 139 (153)
Q Consensus 101 ~~v~------~~Pt~~~~~-~g~~~~~~----~g~~~~~~i~~~l~~~~~ 139 (153)
|++. .+|+.+++. +|+..... .+.++.+++.+.|+....
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~ 155 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQV 155 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence 7874 589999996 67654333 334688999888876544
No 157
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.61 E-value=5.8e-07 Score=70.31 Aligned_cols=99 Identities=14% Similarity=0.185 Sum_probs=76.1
Q ss_pred ceEEeCcccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEE
Q 031790 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKV 111 (153)
Q Consensus 32 ~~~~l~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 111 (153)
.-..++++..+....-++..-+-.|+++.||+|......+++++...+ ++..-.+|..+.++++++|++.++|++++
T Consensus 100 ~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p---~i~~~~id~~~~~~~~~~~~v~~VP~~~i 176 (515)
T TIGR03140 100 HGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP---NISHTMIDGALFQDEVEALGIQGVPAVFL 176 (515)
T ss_pred CCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC---CceEEEEEchhCHHHHHhcCCcccCEEEE
Confidence 345565555444332233445889999999999998888888888766 48888999999999999999999999987
Q ss_pred EeCCeeeeeecCCCCHHHHHHHHHHH
Q 031790 112 FYDGKEVAKYQGPRDVESLKTFVLEE 137 (153)
Q Consensus 112 ~~~g~~~~~~~g~~~~~~i~~~l~~~ 137 (153)
+|+. .+.|..+.+++.+.+...
T Consensus 177 --~~~~--~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 177 --NGEE--FHNGRMDLAELLEKLEET 198 (515)
T ss_pred --CCcE--EEecCCCHHHHHHHHhhc
Confidence 5543 367888888887777655
No 158
>PRK15000 peroxidase; Provisional
Probab=98.60 E-value=9e-07 Score=61.02 Aligned_cols=89 Identities=10% Similarity=0.093 Sum_probs=66.2
Q ss_pred CCccEEEEEEc-CCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC----------------------------chhhh
Q 031790 48 KDTAWFVKFCV-PWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA----------------------------SKTLC 98 (153)
Q Consensus 48 ~~~~vlv~f~~-~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~----------------------------~~~~~ 98 (153)
.+++++++||. +||+.|....+.+.+.++.+.+ .++.++.|.++. +..++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~-~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia 111 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQK-RGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQ 111 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHH
Confidence 35688999999 5999999999999999998874 357777776652 12345
Q ss_pred hhCCCC------ccceEEEEe-CCeeeeeecCC----CCHHHHHHHHHHH
Q 031790 99 SKVDIH------SYPTFKVFY-DGKEVAKYQGP----RDVESLKTFVLEE 137 (153)
Q Consensus 99 ~~~~v~------~~Pt~~~~~-~g~~~~~~~g~----~~~~~i~~~l~~~ 137 (153)
+.|++. +.|+.++++ +|+....+.|. ++.+++.+.++..
T Consensus 112 ~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 112 KAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred HHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 667887 689999997 78766555542 4778888888554
No 159
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.58 E-value=4.3e-07 Score=61.68 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=36.6
Q ss_pred CCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031790 48 KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCG 92 (153)
Q Consensus 48 ~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~ 92 (153)
.+++++|.|||.||+.|+. .+.++++++.+++ .++.++.+.|+
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~-~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWAD-QGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhh-CCeEEEEeecc
Confidence 3578999999999999975 7799999999875 46999999874
No 160
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.57 E-value=3.2e-07 Score=59.53 Aligned_cols=45 Identities=20% Similarity=0.295 Sum_probs=37.3
Q ss_pred CCccEEEEEEcCCChH-HHhHHHHHHHHHHHhcCC--CCeEEEEeeCC
Q 031790 48 KDTAWFVKFCVPWCKH-CKNLGSLWEDLGKAMEGD--DEIEVGEVDCG 92 (153)
Q Consensus 48 ~~~~vlv~f~~~~C~~-C~~~~~~~~~~~~~~~~~--~~~~~~~vd~~ 92 (153)
.++++++.||++||++ |....+.+.++.+.+.+. .++.++.|..+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 3578899999999997 999999999999988753 25888777764
No 161
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=98.53 E-value=3.3e-06 Score=58.53 Aligned_cols=40 Identities=13% Similarity=0.428 Sum_probs=30.7
Q ss_pred CccEEEEEEcCCChHHHhHHHHH---HHHHHHhcCCCCeEEEEee
Q 031790 49 DTAWFVKFCVPWCKHCKNLGSLW---EDLGKAMEGDDEIEVGEVD 90 (153)
Q Consensus 49 ~~~vlv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd 90 (153)
+++.++.|++-.||||..+.+.+ +.+.+.+++ ++.++++.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~--~v~~~~~~ 79 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE--GTKMTKYH 79 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC--CCeEEEec
Confidence 45679999999999999999876 777777765 45555443
No 162
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.53 E-value=6e-07 Score=61.73 Aligned_cols=77 Identities=18% Similarity=0.314 Sum_probs=54.5
Q ss_pred CCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEE----------------------------------------
Q 031790 48 KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVG---------------------------------------- 87 (153)
Q Consensus 48 ~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------- 87 (153)
+.++.++.|+.++||+|+++.+.+.+. .. ++.+.
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~~----~~--~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~ 149 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKPN----AD--GVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPP 149 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhhc----cC--ceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCC
Confidence 356789999999999999999888751 11 12222
Q ss_pred -----EeeCCCchhhhhhCCCCccceEEEEeCCeeeeeecCCCCHHHHHHHH
Q 031790 88 -----EVDCGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFV 134 (153)
Q Consensus 88 -----~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~i~~~l 134 (153)
..+++++..+++++++.++|+++ +.+|+. ..|..+.+++.++|
T Consensus 150 ~~~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L 197 (197)
T cd03020 150 PAASCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL 197 (197)
T ss_pred CccccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence 11222334567789999999997 778875 47888888887764
No 163
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.52 E-value=6.4e-07 Score=49.64 Aligned_cols=55 Identities=24% Similarity=0.393 Sum_probs=40.7
Q ss_pred EEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhh----hhhCCCCccceEEEEeCCee
Q 031790 53 FVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTL----CSKVDIHSYPTFKVFYDGKE 117 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~g~~ 117 (153)
++.|+.+||++|+.....+++. ++.+..+|+++++.. .+..+..++|++++ +|+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~--------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK--------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT--------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc--------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEE
Confidence 4679999999999998777332 477777887766433 33349999999986 6654
No 164
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=98.50 E-value=1.5e-06 Score=62.00 Aligned_cols=83 Identities=13% Similarity=0.210 Sum_probs=57.0
Q ss_pred CccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeC-------------------------------------
Q 031790 49 DTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDC------------------------------------- 91 (153)
Q Consensus 49 ~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~------------------------------------- 91 (153)
.+.+++.|..+.||+|+++.+.+.++.+. + ++.+..+..
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g--~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~ 192 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDS--G--KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLK 192 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhc--C--ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCC
Confidence 45679999999999999999887765432 1 133322211
Q ss_pred -------------CCchhhhhhCCCCccceEEEEeCCeeeeeecCCCCHHHHHHHHH
Q 031790 92 -------------GASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFVL 135 (153)
Q Consensus 92 -------------~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~i~~~l~ 135 (153)
+++..+.+++|++++|++++-+....+....|..+.+++.+.+.
T Consensus 193 ~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 193 PPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred ccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhC
Confidence 01223456789999999988763234556799999999988774
No 165
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.50 E-value=1.1e-06 Score=51.54 Aligned_cols=68 Identities=19% Similarity=0.413 Sum_probs=47.0
Q ss_pred cEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCc---hhhhhhCCCCccceEEEEeCCeeeeeecCCCCH
Q 031790 51 AWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGAS---KTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDV 127 (153)
Q Consensus 51 ~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~---~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~ 127 (153)
.-++.|+.+||++|++.+..+++. ++.+..+|++++ ..+.+..+...+|++++ +|+.+ -|.
T Consensus 8 ~~V~ly~~~~Cp~C~~ak~~L~~~--------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~i---gG~--- 71 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAKAKATLKEK--------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKLI---GGS--- 71 (79)
T ss_pred CCEEEEECCCCHhHHHHHHHHHHc--------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEEE---cCH---
Confidence 347889999999999999887632 366667777655 34445568899999964 77643 222
Q ss_pred HHHHHHH
Q 031790 128 ESLKTFV 134 (153)
Q Consensus 128 ~~i~~~l 134 (153)
+++.++|
T Consensus 72 ~~l~~~l 78 (79)
T TIGR02190 72 DELEAYL 78 (79)
T ss_pred HHHHHHh
Confidence 5555554
No 166
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.47 E-value=3.1e-06 Score=52.93 Aligned_cols=102 Identities=13% Similarity=0.116 Sum_probs=77.3
Q ss_pred eEEeCcccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHH---hcCCCCeEEEEeeCCCchhhhhhCCCCc--cc
Q 031790 33 VITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKA---MEGDDEIEVGEVDCGASKTLCSKVDIHS--YP 107 (153)
Q Consensus 33 ~~~l~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~---~~~~~~~~~~~vd~~~~~~~~~~~~v~~--~P 107 (153)
+++++.++...... ++.+..+.|+++. .-....+.+.++++. +++ ++.|+.+|.+......+.+|+.. +|
T Consensus 1 ~~e~t~e~~~~~~~-~~~~~~~l~f~~~--~~~~~~~~~~~vAk~~~~~kg--ki~Fv~~d~~~~~~~~~~fgl~~~~~P 75 (111)
T cd03072 1 VREITFENAEELTE-EGLPFLILFHDKD--DLESLKEFKQAVARQLISEKG--AINFLTADGDKFRHPLLHLGKTPADLP 75 (111)
T ss_pred CcccccccHHHHhc-CCCCeEEEEecch--HHHHHHHHHHHHHHHHHhcCc--eEEEEEEechHhhhHHHHcCCCHhHCC
Confidence 46788888887664 4445455566332 346788899999999 877 79999999998877999999997 99
Q ss_pred eEEEEeCC--eeeeeecCCCCHHHHHHHHHHHHH
Q 031790 108 TFKVFYDG--KEVAKYQGPRDVESLKTFVLEEAE 139 (153)
Q Consensus 108 t~~~~~~g--~~~~~~~g~~~~~~i~~~l~~~~~ 139 (153)
.+.+.... .......+..+.+.|.+|+++...
T Consensus 76 ~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 76 VIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred EEEEEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 99998643 222225678899999999988765
No 167
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.46 E-value=1.1e-05 Score=51.81 Aligned_cols=114 Identities=18% Similarity=0.319 Sum_probs=81.3
Q ss_pred ceEEeCcccHHHHhccCCccEEEEEEcCC---C-hHH-HhHHHHHHHHHHHhcCCCC-eEEEEeeCCCchhhhhhCCCC-
Q 031790 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPW---C-KHC-KNLGSLWEDLGKAMEGDDE-IEVGEVDCGASKTLCSKVDIH- 104 (153)
Q Consensus 32 ~~~~l~~~~~~~~~~~~~~~vlv~f~~~~---C-~~C-~~~~~~~~~~~~~~~~~~~-~~~~~vd~~~~~~~~~~~~v~- 104 (153)
.+.+++.++..+..=.+++.=+|.| -|. | +.+ ..+...+.++++.+++ + +.|+.+|.++...+.+.|++.
T Consensus 3 ~~~~l~~~~~~~~~C~~~~~C~i~~-l~~~~d~~~e~~~~~~~~l~~vAk~~kg--k~i~Fv~vd~~~~~~~~~~fgl~~ 79 (130)
T cd02983 3 EIIELTSEDVFEETCEEKQLCIIAF-LPHILDCQASCRNKYLEILKSVAEKFKK--KPWGWLWTEAGAQLDLEEALNIGG 79 (130)
T ss_pred ceEEecCHHHHHhhccCCCeEEEEE-cCccccCCHHHHHHHHHHHHHHHHHhcC--CcEEEEEEeCcccHHHHHHcCCCc
Confidence 4667776655443322334434444 332 3 223 4667889999999987 5 999999999988899999985
Q ss_pred -ccceEEEEeCCe-eeeeecCCCCHHHHHHHHHHHHHhHhhhhhcc
Q 031790 105 -SYPTFKVFYDGK-EVAKYQGPRDVESLKTFVLEEAEKAATKAQLG 148 (153)
Q Consensus 105 -~~Pt~~~~~~g~-~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~ 148 (153)
++|++++++..+ .+..+.|..+.+++.+|+++.+........+.
T Consensus 80 ~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl~~~~~~ 125 (130)
T cd02983 80 FGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRGPTLPVN 125 (130)
T ss_pred cCCCEEEEEecccCccccccCccCHHHHHHHHHHHHcCCcccccCC
Confidence 599999997433 34337799999999999999988766554444
No 168
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.42 E-value=6e-06 Score=59.04 Aligned_cols=88 Identities=14% Similarity=0.060 Sum_probs=63.0
Q ss_pred CccEEEEEE-cCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC----------------------------chhhhh
Q 031790 49 DTAWFVKFC-VPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA----------------------------SKTLCS 99 (153)
Q Consensus 49 ~~~vlv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~----------------------------~~~~~~ 99 (153)
++++++.|| ++||+.|....+.+.+.++.+.+ .++.++.|.+|. +..+++
T Consensus 98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~-~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEE-RGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 456677777 89999999999999999888864 346666665543 134567
Q ss_pred hCCCC-----ccceEEEEe-CCeeeeee----cCCCCHHHHHHHHHHH
Q 031790 100 KVDIH-----SYPTFKVFY-DGKEVAKY----QGPRDVESLKTFVLEE 137 (153)
Q Consensus 100 ~~~v~-----~~Pt~~~~~-~g~~~~~~----~g~~~~~~i~~~l~~~ 137 (153)
.|++. ..|+.++++ +|+....+ ...++.+++.+.|+..
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 78875 589999997 78765444 2235788888887544
No 169
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.39 E-value=5.2e-06 Score=54.28 Aligned_cols=32 Identities=28% Similarity=0.295 Sum_probs=27.2
Q ss_pred CCccEEEEEEcCCChHHHhHHHHHHHHHHHhc
Q 031790 48 KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAME 79 (153)
Q Consensus 48 ~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~ 79 (153)
+.++.++.|+.++||+|+.+.+.++++.....
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~ 35 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP 35 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC
Confidence 35678999999999999999999998776654
No 170
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=98.39 E-value=5.5e-06 Score=50.85 Aligned_cols=92 Identities=16% Similarity=0.164 Sum_probs=63.6
Q ss_pred CcccHHHHhcc-CCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCch----hhhhhCCCC-ccceEE
Q 031790 37 TPDTFTDKVKE-KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASK----TLCSKVDIH-SYPTFK 110 (153)
Q Consensus 37 ~~~~~~~~~~~-~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~v~-~~Pt~~ 110 (153)
+.+++++.+.+ .+++++|+=.++.||-.......|++.....++ ++.++.+|+-++. .++++++|. .-|.++
T Consensus 6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~--~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~i 83 (105)
T PF11009_consen 6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPD--EIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVI 83 (105)
T ss_dssp SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT------EEEEEGGGGHHHHHHHHHHHT----SSEEE
T ss_pred CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc--cceEEEEEEEeCchhHHHHHHHhCCCcCCCcEE
Confidence 35677777754 377888888899999999999999999988776 4899999987765 467889997 789999
Q ss_pred EEeCCeeeeeec-CCCCHHHH
Q 031790 111 VFYDGKEVAKYQ-GPRDVESL 130 (153)
Q Consensus 111 ~~~~g~~~~~~~-g~~~~~~i 130 (153)
++++|+.+.... +..+.+++
T Consensus 84 li~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 84 LIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EEETTEEEEEEEGGG-SHHHH
T ss_pred EEECCEEEEECccccCCHHhc
Confidence 999999885543 34555544
No 171
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.38 E-value=2.3e-06 Score=49.21 Aligned_cols=66 Identities=18% Similarity=0.249 Sum_probs=46.2
Q ss_pred EEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhC---CCCccceEEEEeCCeeeeeecCCCCHHHH
Q 031790 54 VKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKV---DIHSYPTFKVFYDGKEVAKYQGPRDVESL 130 (153)
Q Consensus 54 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~---~v~~~Pt~~~~~~g~~~~~~~g~~~~~~i 130 (153)
..|+.++|++|+..+..+++ .++.+-.+|+++++.....+ +..++|++++ +|+. ..|..+.+.|
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~--------~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~~---~~~G~~~~~~ 68 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE--------HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGDL---SWSGFRPDKL 68 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH--------CCCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCCc---EEeccCHHHH
Confidence 46788999999999988764 25778888888777555443 7789999855 4431 2333466666
Q ss_pred HH
Q 031790 131 KT 132 (153)
Q Consensus 131 ~~ 132 (153)
.+
T Consensus 69 ~~ 70 (72)
T TIGR02194 69 KA 70 (72)
T ss_pred Hh
Confidence 54
No 172
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.37 E-value=6.4e-06 Score=49.96 Aligned_cols=86 Identities=19% Similarity=0.270 Sum_probs=64.4
Q ss_pred HHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEeCC-eeee
Q 031790 41 FTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYDG-KEVA 119 (153)
Q Consensus 41 ~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g-~~~~ 119 (153)
+++.+ ..+.+++|-|+.++|+ .....|.++|..+.+ .+.|+.+. +.++++++++. .|++++|++. ....
T Consensus 10 l~~~~-~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~--~~~F~~~~---~~~~~~~~~~~-~~~i~l~~~~~~~~~ 79 (97)
T cd02981 10 LEKFL-DKDDVVVVGFFKDEES---EEYKTFEKVAESLRD--DYGFGHTS---DKEVAKKLKVK-PGSVVLFKPFEEEPV 79 (97)
T ss_pred HHHHh-ccCCeEEEEEECCCCc---HHHHHHHHHHHhccc--CCeEEEEC---hHHHHHHcCCC-CCceEEeCCcccCCc
Confidence 44444 4566778899999987 456788888888865 58887776 46777777765 4899999754 4556
Q ss_pred eecCCCCHHHHHHHHHH
Q 031790 120 KYQGPRDVESLKTFVLE 136 (153)
Q Consensus 120 ~~~g~~~~~~i~~~l~~ 136 (153)
.|.|..+.++|.+||..
T Consensus 80 ~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 80 EYDGEFTEESLVEFIKD 96 (97)
T ss_pred cCCCCCCHHHHHHHHHh
Confidence 78998889999999864
No 173
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=98.35 E-value=1.4e-05 Score=52.80 Aligned_cols=84 Identities=24% Similarity=0.326 Sum_probs=62.1
Q ss_pred CCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchh-------------------------------
Q 031790 48 KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKT------------------------------- 96 (153)
Q Consensus 48 ~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~------------------------------- 96 (153)
+.+++++.|++..||+|+.+.+.+.++.+.+-+..++.|...++.....
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQE 90 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCH
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 4567899999999999999999999998888333368877776531100
Q ss_pred -------------------------------------hhhhCCCCccceEEEEeCCeeeeeecCCCCHHHHHHHHHH
Q 031790 97 -------------------------------------LCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFVLE 136 (153)
Q Consensus 97 -------------------------------------~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~i~~~l~~ 136 (153)
.+++++|.++|++++ ||+. +.|..+.+++.++|++
T Consensus 91 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~---~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 91 NFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKY---VVGPYTIEELKELIDK 162 (162)
T ss_dssp STSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCE---EETTTSHHHHHHHHHH
T ss_pred ccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEE---eCCCCCHHHHHHHHcC
Confidence 023449999999998 8875 4788899999999864
No 174
>PRK13189 peroxiredoxin; Provisional
Probab=98.35 E-value=7.1e-06 Score=57.50 Aligned_cols=86 Identities=8% Similarity=0.028 Sum_probs=60.4
Q ss_pred cEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC---------------------------chhhhhhCCC
Q 031790 51 AWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA---------------------------SKTLCSKVDI 103 (153)
Q Consensus 51 ~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~---------------------------~~~~~~~~~v 103 (153)
.+++.|+++||+.|....+.+.+.++.+++ .++.++.|.++. +..+++.|++
T Consensus 38 vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~-~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv 116 (222)
T PRK13189 38 FVLFSHPADFTPVCTTEFVAFQKRYDEFRE-LNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGM 116 (222)
T ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCC
Confidence 445677899999999999999999888864 356676666552 1234567776
Q ss_pred C-------ccceEEEEe-CCeeeeeec----CCCCHHHHHHHHHHH
Q 031790 104 H-------SYPTFKVFY-DGKEVAKYQ----GPRDVESLKTFVLEE 137 (153)
Q Consensus 104 ~-------~~Pt~~~~~-~g~~~~~~~----g~~~~~~i~~~l~~~ 137 (153)
. .+|+.++++ +|....... ..++.+++.+.|+..
T Consensus 117 ~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 117 ISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred CccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 4 468888886 776544433 335788888888654
No 175
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.35 E-value=6.8e-06 Score=56.84 Aligned_cols=86 Identities=7% Similarity=0.071 Sum_probs=60.8
Q ss_pred cEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC---------------------------chhhhhhCCC
Q 031790 51 AWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA---------------------------SKTLCSKVDI 103 (153)
Q Consensus 51 ~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~---------------------------~~~~~~~~~v 103 (153)
.+++.|+++||+.|....+.+.+.++.+++ .++.++.|.++. +..+++.|++
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~-~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~ 106 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKK-RNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGM 106 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHH-cCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCC
Confidence 456688999999999999999999998875 357777776653 1245667776
Q ss_pred C----c----cceEEEEe-CCeeeeeecC----CCCHHHHHHHHHHH
Q 031790 104 H----S----YPTFKVFY-DGKEVAKYQG----PRDVESLKTFVLEE 137 (153)
Q Consensus 104 ~----~----~Pt~~~~~-~g~~~~~~~g----~~~~~~i~~~l~~~ 137 (153)
. + .|+.++++ +|+......+ .++.+++.+.|+..
T Consensus 107 ~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 107 IDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred ccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 5 2 34567775 7776655444 34677888888654
No 176
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.34 E-value=2.5e-06 Score=50.06 Aligned_cols=58 Identities=28% Similarity=0.381 Sum_probs=42.5
Q ss_pred EEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCch-----hhhhhCCCCccceEEEEeCCeee
Q 031790 53 FVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASK-----TLCSKVDIHSYPTFKVFYDGKEV 118 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-----~~~~~~~v~~~Pt~~~~~~g~~~ 118 (153)
++.|+++|||+|+.+.+.+++... .+.++.++.+.+. .+.+..+..++|+++ -+|+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~--~~g~~i 64 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV------KPAVVELDQHEDGSEIQDYLQELTGQRTVPNVF--IGGKFI 64 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC------CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEE--ECCEEE
Confidence 578999999999999988887644 3667777766542 344567888999974 467543
No 177
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.32 E-value=2.9e-06 Score=49.98 Aligned_cols=78 Identities=21% Similarity=0.297 Sum_probs=58.6
Q ss_pred EEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEeCC--eeeeeecCCCCHHHH
Q 031790 53 FVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYDG--KEVAKYQGPRDVESL 130 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g--~~~~~~~g~~~~~~i 130 (153)
++.|+.+.|+-|..+...++++... ..+.+-.||+++++.+..+|+. .+|.+.+-..+ .......+..+.+.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~----~~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L 76 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAE----FPFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQL 76 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTT----STCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhh----cCceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHH
Confidence 6889999999999998887775433 3589999999999999999995 89998764311 112355678899999
Q ss_pred HHHHH
Q 031790 131 KTFVL 135 (153)
Q Consensus 131 ~~~l~ 135 (153)
.++|+
T Consensus 77 ~~~L~ 81 (81)
T PF05768_consen 77 RAWLE 81 (81)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99885
No 178
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.30 E-value=1.2e-05 Score=56.10 Aligned_cols=86 Identities=6% Similarity=0.001 Sum_probs=61.9
Q ss_pred cEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCc---------------------------hhhhhhCCC
Q 031790 51 AWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGAS---------------------------KTLCSKVDI 103 (153)
Q Consensus 51 ~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~---------------------------~~~~~~~~v 103 (153)
.+++.|+++||+.|....+.+.++++.+.+ .++.++.+.++.. ..+++.|++
T Consensus 31 vVL~~~pa~~tpvCt~El~~l~~~~~~f~~-~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~ 109 (215)
T PRK13599 31 FVLFSHPADFTPVCTTEFVEFARKANDFKE-LNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGM 109 (215)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHcCC
Confidence 357789999999999999999999998864 3577777766631 234566776
Q ss_pred C-------ccceEEEEe-CCeeeeeec----CCCCHHHHHHHHHHH
Q 031790 104 H-------SYPTFKVFY-DGKEVAKYQ----GPRDVESLKTFVLEE 137 (153)
Q Consensus 104 ~-------~~Pt~~~~~-~g~~~~~~~----g~~~~~~i~~~l~~~ 137 (153)
. ..|+.+++. +|+....+. ..++.+++.+.|+..
T Consensus 110 ~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 110 IHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred CccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 3 679999996 676554332 124688888888654
No 179
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.30 E-value=1.3e-05 Score=46.05 Aligned_cols=66 Identities=21% Similarity=0.397 Sum_probs=45.6
Q ss_pred EEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchh---hhhhCCCCccceEEEEeCCeeeeeecCCCCHHH
Q 031790 53 FVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKT---LCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVES 129 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~ 129 (153)
++.|..+||++|.+.+..+++. ++.+..+|++++.. +.+..+...+|.+++ +|+.+ | ..++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~--------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi--~g~~i----g--g~~~ 66 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN--------GISYEEIPLGKDITGRSLRAVTGAMTVPQVFI--DGELI----G--GSDD 66 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc--------CCCcEEEECCCChhHHHHHHHhCCCCcCeEEE--CCEEE----e--CHHH
Confidence 6789999999999998777642 36667777765542 333458889999843 67644 2 3566
Q ss_pred HHHHH
Q 031790 130 LKTFV 134 (153)
Q Consensus 130 i~~~l 134 (153)
+.+++
T Consensus 67 l~~~l 71 (72)
T cd03029 67 LEKYF 71 (72)
T ss_pred HHHHh
Confidence 76665
No 180
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=98.28 E-value=1.1e-05 Score=50.34 Aligned_cols=98 Identities=11% Similarity=0.042 Sum_probs=69.5
Q ss_pred EeCcccHHHHhccCCccEEEEEE----cCCChHHHhHHHHHHHHHHHhc-CCCCeEEEEeeCCCchhhhhhCCCCc----
Q 031790 35 TLTPDTFTDKVKEKDTAWFVKFC----VPWCKHCKNLGSLWEDLGKAME-GDDEIEVGEVDCGASKTLCSKVDIHS---- 105 (153)
Q Consensus 35 ~l~~~~~~~~~~~~~~~vlv~f~----~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~~~vd~~~~~~~~~~~~v~~---- 105 (153)
+++.++..... ..+.++.|+ +..-..-..+.+.+.++|+.++ + ++.|+.+|.++.....+.+|+..
T Consensus 3 ~~~~en~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~g--ki~Fv~~D~~~~~~~l~~fgl~~~~~~ 77 (111)
T cd03073 3 HRTKDNRAQFT---KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDR--KLNFAVADKEDFSHELEEFGLDFSGGE 77 (111)
T ss_pred eeccchHHHhc---cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCC--eEEEEEEcHHHHHHHHHHcCCCcccCC
Confidence 45666666664 233344433 2233444678889999999998 5 69999999998777889999984
Q ss_pred cceEEEEeCCeeeeeecCCC-CHHHHHHHHHHH
Q 031790 106 YPTFKVFYDGKEVAKYQGPR-DVESLKTFVLEE 137 (153)
Q Consensus 106 ~Pt~~~~~~g~~~~~~~g~~-~~~~i~~~l~~~ 137 (153)
+|++.+...........+.. +.++|.+|+++.
T Consensus 78 ~P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 78 KPVVAIRTAKGKKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred CCEEEEEeCCCCccCCCcccCCHHHHHHHHHHh
Confidence 99999986322222246777 899999999764
No 181
>PHA03050 glutaredoxin; Provisional
Probab=98.26 E-value=3.4e-06 Score=52.45 Aligned_cols=61 Identities=10% Similarity=0.114 Sum_probs=40.0
Q ss_pred EEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC-c----hhhhhhCCCCccceEEEEeCCeee
Q 031790 53 FVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA-S----KTLCSKVDIHSYPTFKVFYDGKEV 118 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-~----~~~~~~~~v~~~Pt~~~~~~g~~~ 118 (153)
++.|..+|||+|++.+..+++.....+. +..+.+|-.. . ..+.+..+-+.+|++++ +|+.+
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~~---~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~~i 80 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRGA---YEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKTSI 80 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcCC---cEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCEEE
Confidence 7789999999999999887766432222 4444444211 2 23445567889999955 67655
No 182
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.25 E-value=1.8e-05 Score=46.66 Aligned_cols=72 Identities=7% Similarity=0.142 Sum_probs=51.9
Q ss_pred EEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhh---hhCCCCccceEEEEeCCeeeeeecCCCCHHH
Q 031790 53 FVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLC---SKVDIHSYPTFKVFYDGKEVAKYQGPRDVES 129 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~---~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~ 129 (153)
+..|+.+||++|+..+..+++ .++.|-.+|++++++.. +..+...+|++++ ++.. ..| .+.+.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~--------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~~---~~G-f~~~~ 68 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES--------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDLS---WSG-FRPDM 68 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH--------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCEE---Eec-CCHHH
Confidence 667899999999998887744 25888889998776543 3457789999965 4432 234 47888
Q ss_pred HHHHHHHHH
Q 031790 130 LKTFVLEEA 138 (153)
Q Consensus 130 i~~~l~~~~ 138 (153)
|.+++....
T Consensus 69 l~~~~~~~~ 77 (81)
T PRK10329 69 INRLHPAPH 77 (81)
T ss_pred HHHHHHhhh
Confidence 888876543
No 183
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.25 E-value=1.9e-05 Score=55.04 Aligned_cols=86 Identities=5% Similarity=-0.004 Sum_probs=60.7
Q ss_pred cEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCc---------------------------hhhhhhCCC
Q 031790 51 AWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGAS---------------------------KTLCSKVDI 103 (153)
Q Consensus 51 ~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~---------------------------~~~~~~~~v 103 (153)
.+++.|+++||+.|....+.+.+.++.+.. .++.++.+.+|.. ..+++.|++
T Consensus 36 vvLff~pa~ftpvC~tEl~~l~~~~~ef~~-~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ygv 114 (215)
T PRK13191 36 FVLFSHPGDFTPVCTTEFYSFAKKYEEFKK-LNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRLGM 114 (215)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHcCC
Confidence 344578899999999999999999998864 3577777766531 234556776
Q ss_pred C-------ccceEEEEe-CCeeeeeecC----CCCHHHHHHHHHHH
Q 031790 104 H-------SYPTFKVFY-DGKEVAKYQG----PRDVESLKTFVLEE 137 (153)
Q Consensus 104 ~-------~~Pt~~~~~-~g~~~~~~~g----~~~~~~i~~~l~~~ 137 (153)
. ..|+.++++ +|+....+.+ .++.+++.+.|+..
T Consensus 115 ~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 115 IHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred cccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 3 468888886 7765544322 24788888888654
No 184
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.24 E-value=4.5e-06 Score=51.10 Aligned_cols=56 Identities=21% Similarity=0.220 Sum_probs=37.5
Q ss_pred EEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchh-------hhhhCCCCccceEEEEeCCeee
Q 031790 53 FVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKT-------LCSKVDIHSYPTFKVFYDGKEV 118 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~-------~~~~~~v~~~Pt~~~~~~g~~~ 118 (153)
++.|..+|||+|++.+..+.+. ++.+..+|++++++ +.+..+...+|.+++ +|+.+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~--------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi--~g~~i 72 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL--------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV--GGKLV 72 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc--------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE--CCEEE
Confidence 7789999999999998876654 23344555554432 333446789999844 77655
No 185
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=98.22 E-value=2.2e-05 Score=52.74 Aligned_cols=38 Identities=18% Similarity=0.372 Sum_probs=31.3
Q ss_pred CCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEE
Q 031790 48 KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVG 87 (153)
Q Consensus 48 ~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~ 87 (153)
+.++.++.|+...||+|+.+.+.+.++.+.+++ ++.+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~--~v~~~ 51 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK--DVKFE 51 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC--CceEE
Confidence 456789999999999999999999999887754 34443
No 186
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.21 E-value=1.3e-05 Score=63.30 Aligned_cols=104 Identities=17% Similarity=0.227 Sum_probs=81.3
Q ss_pred HHHHhccCCcc-EEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEe-CCeee
Q 031790 41 FTDKVKEKDTA-WFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFY-DGKEV 118 (153)
Q Consensus 41 ~~~~~~~~~~~-vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~-~g~~~ 118 (153)
+.+.+.+-.++ .++.|+.+.|..|..+...+++++..-+ .+.+...|..++...+++|++...|++.+++ +|+..
T Consensus 357 l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~---~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~ 433 (555)
T TIGR03143 357 LVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASLSE---KLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYT 433 (555)
T ss_pred HHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhcCC---cEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCccc
Confidence 33333333444 5778888899999999999999986544 4888889988899999999999999999995 55432
Q ss_pred -eeecCCCCHHHHHHHHHHHHHhHhhhhhc
Q 031790 119 -AKYQGPRDVESLKTFVLEEAEKAATKAQL 147 (153)
Q Consensus 119 -~~~~g~~~~~~i~~~l~~~~~~~~~~~~~ 147 (153)
.+|.|.+.-.++..||...+.-+.....+
T Consensus 434 ~i~f~g~P~G~Ef~s~i~~i~~~~~~~~~l 463 (555)
T TIGR03143 434 GLKFHGVPSGHELNSFILALYNAAGPGQPL 463 (555)
T ss_pred ceEEEecCccHhHHHHHHHHHHhcCCCCCC
Confidence 68999999999999999888866544333
No 187
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=98.20 E-value=2.2e-05 Score=53.24 Aligned_cols=105 Identities=14% Similarity=0.205 Sum_probs=82.1
Q ss_pred hcCCCceEEeCcccHHHHhcc--CCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCC
Q 031790 27 IHSKSEVITLTPDTFTDKVKE--KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIH 104 (153)
Q Consensus 27 ~~~~~~~~~l~~~~~~~~~~~--~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~ 104 (153)
.+.-+.+.+++..+|-+.+.+ .+--|+|+.|...-+.|.-+...++.++..+++ ++|+++-.+.. ...|--.
T Consensus 87 k~kfG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~---iKFVki~at~c---IpNYPe~ 160 (240)
T KOG3170|consen 87 KAKFGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ---IKFVKIPATTC---IPNYPES 160 (240)
T ss_pred HhcccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc---ceEEecccccc---cCCCccc
Confidence 445678999999999988854 344578999999999999999999999999998 99998875432 2356668
Q ss_pred ccceEEEEeCCeeeeeecCC-------CCHHHHHHHHHHH
Q 031790 105 SYPTFKVFYDGKEVAKYQGP-------RDVESLKTFVLEE 137 (153)
Q Consensus 105 ~~Pt~~~~~~g~~~~~~~g~-------~~~~~i~~~l~~~ 137 (153)
..||+++|..|.....+.|. .+.+++..++-+.
T Consensus 161 nlPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qa 200 (240)
T KOG3170|consen 161 NLPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQA 200 (240)
T ss_pred CCCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhc
Confidence 89999999999766555543 3566777776554
No 188
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.19 E-value=8.2e-06 Score=46.23 Aligned_cols=57 Identities=28% Similarity=0.407 Sum_probs=40.7
Q ss_pred EEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhh----hhhCCCCccceEEEEeCCeeee
Q 031790 53 FVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTL----CSKVDIHSYPTFKVFYDGKEVA 119 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~g~~~~ 119 (153)
++.|+++||++|+.....+++.. +.+..+|++.+++. .+..+...+|++++ +|+.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~--------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~--~~~~ig 62 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG--------IEFEEIDILEDGELREELKELSGWPTVPQIFI--NGEFIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC--------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence 56789999999999998877552 55677787766543 33456678898754 776553
No 189
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.19 E-value=3.3e-05 Score=53.25 Aligned_cols=88 Identities=14% Similarity=0.084 Sum_probs=60.6
Q ss_pred CccEEEEEEc-CCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCc----------------------------hhhhh
Q 031790 49 DTAWFVKFCV-PWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGAS----------------------------KTLCS 99 (153)
Q Consensus 49 ~~~vlv~f~~-~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~----------------------------~~~~~ 99 (153)
++.++++||. +||+.|....+.+.+.++.+.. .++.++.|+++.. ..+++
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~-~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNE-LNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHH-cCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 4677889994 8899999888899999888875 4677777776531 23456
Q ss_pred hCCCC------ccceEEEEe-CCeeeeeecC----CCCHHHHHHHHHHH
Q 031790 100 KVDIH------SYPTFKVFY-DGKEVAKYQG----PRDVESLKTFVLEE 137 (153)
Q Consensus 100 ~~~v~------~~Pt~~~~~-~g~~~~~~~g----~~~~~~i~~~l~~~ 137 (153)
.|++. .+|+.++++ +|+......+ .++.+++.+.|+..
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF 163 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence 77875 468888886 6765554433 23556666666443
No 190
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.18 E-value=1.3e-05 Score=46.21 Aligned_cols=56 Identities=14% Similarity=0.311 Sum_probs=39.7
Q ss_pred EEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhh----hhCCCC-ccceEEEEeCCeee
Q 031790 53 FVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLC----SKVDIH-SYPTFKVFYDGKEV 118 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~v~-~~Pt~~~~~~g~~~ 118 (153)
+..|+.+||++|+.....+++. ++.+-.+|++.+++.. +..+.. ++|++++ +|+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i--~g~~i 62 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK--------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI--GDVHI 62 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE--CCEEE
Confidence 5678999999999998877652 4667777877665433 334666 8998854 67544
No 191
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.17 E-value=6.2e-06 Score=47.50 Aligned_cols=56 Identities=13% Similarity=0.189 Sum_probs=41.8
Q ss_pred EEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchh----hhhhCCCCccceEEEEeCCeee
Q 031790 53 FVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKT----LCSKVDIHSYPTFKVFYDGKEV 118 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~ 118 (153)
++.|+.+||++|+.....+++. ++.+..+|+++++. +.+..+-..+|++++ +|+.+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~--------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i--~~~~i 62 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK--------GLPYVEINIDIFPERKAELEERTGSSVVPQIFF--NEKLV 62 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence 6778999999999999877752 46777888877654 444557788999855 67644
No 192
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=98.13 E-value=1.1e-05 Score=49.82 Aligned_cols=94 Identities=19% Similarity=0.290 Sum_probs=68.0
Q ss_pred CCCceEEeCcccHHHHhccCCccEEEEEEcCCChHHHh---HHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCc
Q 031790 29 SKSEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKN---LGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHS 105 (153)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~---~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~ 105 (153)
.......++.++++..+.. +.. .+.|.+..|..+.+ ..=.+.++.+.+++ .+..+.++-+.+..+..+|++..
T Consensus 7 ~~~g~~~vd~~~ld~~l~~-~~~-~vlf~~gDp~r~~E~~DvaVILPEL~~af~~--~~~~avv~~~~e~~L~~r~gv~~ 82 (107)
T PF07449_consen 7 TRHGWPRVDADTLDAFLAA-PGD-AVLFFAGDPARFPETADVAVILPELVKAFPG--RFRGAVVARAAERALAARFGVRR 82 (107)
T ss_dssp TT-TEEEE-CCCHHHHHHC-CSC-EEEEESS-TTTSTTCCHHHHHHHHHHCTSTT--SEEEEEEEHHHHHHHHHHHT-TS
T ss_pred hhcCCeeechhhHHHHHhC-CCc-EEEEECCCCCcCcccccceeEcHHHHHhhhC--ccceEEECchhHHHHHHHhCCcc
Confidence 3557888999999999865 334 44555655544443 33477788888887 57777777667789999999999
Q ss_pred cceEEEEeCCeeeeeecCCCC
Q 031790 106 YPTFKVFYDGKEVAKYQGPRD 126 (153)
Q Consensus 106 ~Pt~~~~~~g~~~~~~~g~~~ 126 (153)
+|+++++++|+.+....|-.+
T Consensus 83 ~PaLvf~R~g~~lG~i~gi~d 103 (107)
T PF07449_consen 83 WPALVFFRDGRYLGAIEGIRD 103 (107)
T ss_dssp SSEEEEEETTEEEEEEESSST
T ss_pred CCeEEEEECCEEEEEecCeec
Confidence 999999999998888777654
No 193
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.13 E-value=8.3e-06 Score=47.65 Aligned_cols=56 Identities=14% Similarity=0.333 Sum_probs=39.5
Q ss_pred EEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhh----hhCCCCccceEEEEeCCeee
Q 031790 53 FVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLC----SKVDIHSYPTFKVFYDGKEV 118 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~Pt~~~~~~g~~~ 118 (153)
+..|+.+||++|......+++. ++.+..+|++.++... +..+..++|++++ +|+.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~--------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i--~g~~i 60 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK--------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI--GDVHV 60 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc--------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence 3568899999999999888753 3556666777665443 3457789999854 67544
No 194
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=2.4e-05 Score=45.93 Aligned_cols=54 Identities=19% Similarity=0.418 Sum_probs=39.5
Q ss_pred EEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCch-----hhhhhC-CCCccceEEEEeCCe
Q 031790 53 FVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASK-----TLCSKV-DIHSYPTFKVFYDGK 116 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-----~~~~~~-~v~~~Pt~~~~~~g~ 116 (153)
++.|..++||+|++.+..+.+ .++.+..+|++.+. +..++. +.+.+|++++ +|+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~--------~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~ 62 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR--------KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGK 62 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH--------cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCE
Confidence 677899999999998877762 25777777776554 333344 7899999976 565
No 195
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.91 E-value=4.4e-05 Score=45.67 Aligned_cols=59 Identities=25% Similarity=0.295 Sum_probs=42.7
Q ss_pred EEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeC--CCc------------------------------hhhhhh
Q 031790 53 FVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDC--GAS------------------------------KTLCSK 100 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~--~~~------------------------------~~~~~~ 100 (153)
+..|+++.||+|..+.+.++++.....+ ++.+....+ ... ...+++
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 78 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG--GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARA 78 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC--cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 4679999999999999999998755544 455554443 221 234567
Q ss_pred CCCCccceEEEEe
Q 031790 101 VDIHSYPTFKVFY 113 (153)
Q Consensus 101 ~~v~~~Pt~~~~~ 113 (153)
+++.++|++++..
T Consensus 79 ~g~~g~Pt~v~~~ 91 (98)
T cd02972 79 LGVTGTPTFVVNG 91 (98)
T ss_pred cCCCCCCEEEECC
Confidence 8999999998853
No 196
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.88 E-value=0.0001 Score=44.96 Aligned_cols=50 Identities=14% Similarity=0.199 Sum_probs=35.4
Q ss_pred CCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhh----hhCCCCccceEEEEeCCeee
Q 031790 59 PWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLC----SKVDIHSYPTFKVFYDGKEV 118 (153)
Q Consensus 59 ~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~Pt~~~~~~g~~~ 118 (153)
+|||+|++....+.+. ++.+..+|+++++... +..+-..+|.+++ +|+.+
T Consensus 25 ~~Cp~C~~ak~lL~~~--------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi--~g~~i 78 (97)
T TIGR00365 25 PQCGFSARAVQILKAC--------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV--KGEFV 78 (97)
T ss_pred CCCchHHHHHHHHHHc--------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE--CCEEE
Confidence 8999999998877663 3556777887665433 3456678999865 67644
No 197
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.86 E-value=9.8e-05 Score=50.66 Aligned_cols=105 Identities=16% Similarity=0.243 Sum_probs=82.4
Q ss_pred CCCceEEeC-cccHHHHhccC--CccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCc
Q 031790 29 SKSEVITLT-PDTFTDKVKEK--DTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHS 105 (153)
Q Consensus 29 ~~~~~~~l~-~~~~~~~~~~~--~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~ 105 (153)
..+.+.+++ .++|.+.+.+. ...++|+.|-|.-+-|..+...+.-++..++. +.|+++-.+ +....++|...+
T Consensus 136 ~~~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~---vKFckikss-~~gas~~F~~n~ 211 (273)
T KOG3171|consen 136 RYGFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI---VKFCKIKSS-NTGASDRFSLNV 211 (273)
T ss_pred ccceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc---eeEEEeeec-cccchhhhcccC
Confidence 345677776 57788888544 44578999999999999999999999999997 999999854 457778999999
Q ss_pred cceEEEEeCCeeeeeecC-------CCCHHHHHHHHHHH
Q 031790 106 YPTFKVFYDGKEVAKYQG-------PRDVESLKTFVLEE 137 (153)
Q Consensus 106 ~Pt~~~~~~g~~~~~~~g-------~~~~~~i~~~l~~~ 137 (153)
+|++.+|++|+.+..|.. ......+.+||...
T Consensus 212 lP~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 212 LPTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred CceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 999999999988765542 24556677777554
No 198
>PRK10638 glutaredoxin 3; Provisional
Probab=97.77 E-value=0.00015 Score=42.81 Aligned_cols=56 Identities=11% Similarity=0.288 Sum_probs=39.8
Q ss_pred EEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchh----hhhhCCCCccceEEEEeCCeee
Q 031790 53 FVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKT----LCSKVDIHSYPTFKVFYDGKEV 118 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~ 118 (153)
+..|..+||++|++....+++. ++.+..+|++.+++ +.+..+...+|++++ +|+.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~--------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~~i 63 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK--------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQHI 63 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc--------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence 5678899999999998777753 35566777776553 334457788998854 67544
No 199
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.70 E-value=0.00022 Score=42.76 Aligned_cols=50 Identities=18% Similarity=0.418 Sum_probs=34.5
Q ss_pred CCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhh----hhhCCCCccceEEEEeCCeee
Q 031790 59 PWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTL----CSKVDIHSYPTFKVFYDGKEV 118 (153)
Q Consensus 59 ~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~g~~~ 118 (153)
+||++|+.....+++. ++.+..+|+++++++ .+..+-..+|++++ +|+.+
T Consensus 21 ~~Cp~C~~ak~~L~~~--------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi--~g~~i 74 (90)
T cd03028 21 PRCGFSRKVVQILNQL--------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV--NGELV 74 (90)
T ss_pred CCCcHHHHHHHHHHHc--------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE--CCEEE
Confidence 7999999988777664 255666676665543 34457788999844 77644
No 200
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00045 Score=42.52 Aligned_cols=61 Identities=20% Similarity=0.299 Sum_probs=42.6
Q ss_pred CccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCch-hhh----hhCCCCccceEEEEeCCeee
Q 031790 49 DTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASK-TLC----SKVDIHSYPTFKVFYDGKEV 118 (153)
Q Consensus 49 ~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~----~~~~v~~~Pt~~~~~~g~~~ 118 (153)
..+ +|.|..+||++|+.++..|.+ .. .+..++.+|-+.+. ++- +.-+-+.+|.+++ +|+.+
T Consensus 13 ~~~-VVifSKs~C~~c~~~k~ll~~----~~--v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~i 78 (104)
T KOG1752|consen 13 ENP-VVIFSKSSCPYCHRAKELLSD----LG--VNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKFI 78 (104)
T ss_pred cCC-EEEEECCcCchHHHHHHHHHh----CC--CCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEEE
Confidence 446 777999999999998887777 33 25778888866443 322 2234568999876 78655
No 201
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.65 E-value=0.00062 Score=41.22 Aligned_cols=93 Identities=24% Similarity=0.458 Sum_probs=68.8
Q ss_pred ccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC--chhhhhhCCCC----ccce-EEE
Q 031790 39 DTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA--SKTLCSKVDIH----SYPT-FKV 111 (153)
Q Consensus 39 ~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~----~~Pt-~~~ 111 (153)
.+|...++. ...|++.|..+- ..-......+.++++...+ .-+++.|||+. ...+|+++.+. .-|. +.-
T Consensus 10 KdfKKLLRT-r~NVLvLy~ks~-k~a~~~Lk~~~~~A~~vkG--~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkH 85 (112)
T cd03067 10 KDFKKLLRT-RNNVLVLYSKSA-KSAEALLKLLSDVAQAVKG--QGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKH 85 (112)
T ss_pred HHHHHHHhh-cCcEEEEEecch-hhHHHHHHHHHHHHHHhcC--ceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhc
Confidence 567777754 455566665543 3333445578888888887 67889999986 67899999998 5554 445
Q ss_pred EeCCeeeeeecCCCCHHHHHHHHH
Q 031790 112 FYDGKEVAKYQGPRDVESLKTFVL 135 (153)
Q Consensus 112 ~~~g~~~~~~~g~~~~~~i~~~l~ 135 (153)
|++|.-...|.-..+..++..|+.
T Consensus 86 YKdG~fHkdYdR~~t~kSmv~Flr 109 (112)
T cd03067 86 YKDGDFHTEYNRQLTFKSMVAFLR 109 (112)
T ss_pred ccCCCccccccchhhHHHHHHHhh
Confidence 789998888888889999999885
No 202
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.51 E-value=0.00094 Score=44.95 Aligned_cols=70 Identities=23% Similarity=0.369 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEeCC-eeeeeecCC-CCHHHHHHHHHHHHHhH
Q 031790 66 NLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYDG-KEVAKYQGP-RDVESLKTFVLEEAEKA 141 (153)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g-~~~~~~~g~-~~~~~i~~~l~~~~~~~ 141 (153)
.....+.++++.+.+ .+.|+.+. ++++++++++.. |++++|+++ +....|.|. .+.++|.+||....-+.
T Consensus 7 ~~~~~f~~~A~~~~~--~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~ 78 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKG--DYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPL 78 (184)
T ss_dssp HHHHHHHHHHHHHTT--TSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTS
T ss_pred HHHHHHHHHHHhCcC--CcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhcccc
Confidence 345678899999986 59999887 678999999999 999999874 456688887 79999999999886654
No 203
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.51 E-value=0.00034 Score=53.42 Aligned_cols=56 Identities=13% Similarity=0.218 Sum_probs=40.3
Q ss_pred EEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhh---h---------hCCCCccceEEEEeCCeee
Q 031790 53 FVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLC---S---------KVDIHSYPTFKVFYDGKEV 118 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~---~---------~~~v~~~Pt~~~~~~g~~~ 118 (153)
++.|..+|||+|++.+..+.+. ++.+..+|+++++... + ..+.+++|++++ +|+.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~--------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~i 71 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN--------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHI 71 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC--------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEEE
Confidence 6789999999999988776653 4777788887665321 1 246789999966 66544
No 204
>PRK10824 glutaredoxin-4; Provisional
Probab=97.49 E-value=0.00038 Score=43.66 Aligned_cols=51 Identities=20% Similarity=0.262 Sum_probs=33.7
Q ss_pred CCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhh----hhCCCCccceEEEEeCCeeee
Q 031790 59 PWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLC----SKVDIHSYPTFKVFYDGKEVA 119 (153)
Q Consensus 59 ~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~Pt~~~~~~g~~~~ 119 (153)
||||+|++....+.+.. +.+..+|+++++++. +.-+-..+|.+++ +|+.+.
T Consensus 28 p~Cpyc~~ak~lL~~~~--------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI--~G~~IG 82 (115)
T PRK10824 28 PSCGFSAQAVQALSACG--------ERFAYVDILQNPDIRAELPKYANWPTFPQLWV--DGELVG 82 (115)
T ss_pred CCCchHHHHHHHHHHcC--------CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE--CCEEEc
Confidence 69999999998776652 333445655554433 3346678899876 786553
No 205
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.00064 Score=54.12 Aligned_cols=83 Identities=14% Similarity=0.206 Sum_probs=63.1
Q ss_pred eEEeCcccHHHHhccCCccEEEEEEcCCChHHHhHHHHH---HHHHHHhcCCCCeEEEEeeCCCchhhhhhC--------
Q 031790 33 VITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLW---EDLGKAMEGDDEIEVGEVDCGASKTLCSKV-------- 101 (153)
Q Consensus 33 ~~~l~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~-------- 101 (153)
..+...+.|.+.- ..++|+++-....||..|+.|...= +++++.+.. +++-++||-++-|++-+.|
T Consensus 28 W~pW~~eAf~~A~-~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~--~FV~IKVDREERPDvD~~Ym~~~q~~t 104 (667)
T COG1331 28 WYPWGEEAFAKAK-EEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE--NFVPVKVDREERPDVDSLYMNASQAIT 104 (667)
T ss_pred ccccCHHHHHHHH-HhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh--CceeeeEChhhccCHHHHHHHHHHHhc
Confidence 4455667777665 4789999999999999999998643 466776655 7999999999888876655
Q ss_pred CCCccceEEEE-eCCeee
Q 031790 102 DIHSYPTFKVF-YDGKEV 118 (153)
Q Consensus 102 ~v~~~Pt~~~~-~~g~~~ 118 (153)
+--++|--++. ++|++.
T Consensus 105 G~GGWPLtVfLTPd~kPF 122 (667)
T COG1331 105 GQGGWPLTVFLTPDGKPF 122 (667)
T ss_pred cCCCCceeEEECCCCcee
Confidence 35589976666 577765
No 206
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=97.11 E-value=0.018 Score=35.26 Aligned_cols=94 Identities=13% Similarity=0.130 Sum_probs=61.4
Q ss_pred EEe-CcccHHHHhc-cCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEE
Q 031790 34 ITL-TPDTFTDKVK-EKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKV 111 (153)
Q Consensus 34 ~~l-~~~~~~~~~~-~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 111 (153)
..+ +.+++++.+. .++.+ +|-|+..--+ .....|.+++..+.. .+.|+... +..+.+.+++. .|++.+
T Consensus 3 ~~i~~~~~~e~~~~~~~~~~-Vvg~f~~~~~---~~~~~F~~vA~~~R~--d~~F~~~~---~~~~~~~~~~~-~~~i~l 72 (102)
T cd03066 3 EIINSERELQAFENIEDDIK-LIGYFKSEDS---EHYKAFEEAAEEFHP--YIKFFATF---DSKVAKKLGLK-MNEVDF 72 (102)
T ss_pred eEcCCHHHHHHHhcccCCeE-EEEEECCCCC---HHHHHHHHHHHhhhc--CCEEEEEC---cHHHHHHcCCC-CCcEEE
Confidence 445 3455777775 44444 5556555333 345678888888855 47775433 45666777664 688999
Q ss_pred EeC-Ceeeeee-cCCCCHHHHHHHHHHH
Q 031790 112 FYD-GKEVAKY-QGPRDVESLKTFVLEE 137 (153)
Q Consensus 112 ~~~-g~~~~~~-~g~~~~~~i~~~l~~~ 137 (153)
+++ ......| .|..+.+.|.+||...
T Consensus 73 ~~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 73 YEPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred eCCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 875 4444567 7778999999999754
No 207
>PTZ00062 glutaredoxin; Provisional
Probab=97.00 E-value=0.0031 Score=43.62 Aligned_cols=50 Identities=14% Similarity=0.337 Sum_probs=34.9
Q ss_pred CCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhh----hhCCCCccceEEEEeCCeee
Q 031790 59 PWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLC----SKVDIHSYPTFKVFYDGKEV 118 (153)
Q Consensus 59 ~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~Pt~~~~~~g~~~ 118 (153)
|+|++|++....+.+. ++.+..+|++++++.. +..+-..+|.+++ +|+.+
T Consensus 126 p~C~~C~~~k~~L~~~--------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI--~G~~I 179 (204)
T PTZ00062 126 PFCRFSNAVVNMLNSS--------GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV--NGELI 179 (204)
T ss_pred CCChhHHHHHHHHHHc--------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence 7999999988777643 3667778887665543 3345667888876 67654
No 208
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=96.99 E-value=0.012 Score=41.46 Aligned_cols=60 Identities=13% Similarity=0.114 Sum_probs=45.1
Q ss_pred hcCCCceEEeCccc---HHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEE
Q 031790 27 IHSKSEVITLTPDT---FTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVG 87 (153)
Q Consensus 27 ~~~~~~~~~l~~~~---~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~ 87 (153)
.+++.++..++.++ +.+.+ ++++|.++.|.|-.||+=+.-.+.++++++++.+..++.++
T Consensus 78 ~APns~vv~l~g~~~~~ildf~-~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~V 140 (237)
T PF00837_consen 78 PAPNSPVVTLDGQRSCRILDFA-KGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIV 140 (237)
T ss_pred CCCCCceEeeCCCcceeHHHhc-cCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehh
Confidence 34456777887665 33444 47899999999999999999999999999999873334443
No 209
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=96.89 E-value=0.0067 Score=41.02 Aligned_cols=26 Identities=19% Similarity=0.394 Sum_probs=21.7
Q ss_pred EEEcCCChHHHhHHHHHHHHHHHhcC
Q 031790 55 KFCVPWCKHCKNLGSLWEDLGKAMEG 80 (153)
Q Consensus 55 ~f~~~~C~~C~~~~~~~~~~~~~~~~ 80 (153)
+|..|.|++|-...|.+.++...++.
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~ 27 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGN 27 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-T
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCC
Confidence 68999999999999999999999886
No 210
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=96.84 E-value=0.03 Score=34.41 Aligned_cols=89 Identities=19% Similarity=0.221 Sum_probs=58.8
Q ss_pred cccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEeC---
Q 031790 38 PDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYD--- 114 (153)
Q Consensus 38 ~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~--- 114 (153)
.+++++.+.. +++++|-|+.+--. .....+.+++..+.+ ++.|+... +..+.+.+++ -|++++|+.
T Consensus 8 ~~~l~~f~~~-~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~--d~~F~~~~---~~~~~~~~~~--~~~ivl~~p~~~ 76 (104)
T cd03069 8 EAEFEKFLSD-DDASVVGFFEDEDS---KLLSEFLKAADTLRE--SFRFAHTS---DKQLLEKYGY--GEGVVLFRPPRL 76 (104)
T ss_pred HHHHHHHhcc-CCcEEEEEEcCCCc---hHHHHHHHHHHhhhh--cCEEEEEC---hHHHHHhcCC--CCceEEEechhh
Confidence 3456666654 44556666665433 356677888888865 57786544 3567778888 688888832
Q ss_pred ----CeeeeeecCCCCHHHHHHHHHHH
Q 031790 115 ----GKEVAKYQGPRDVESLKTFVLEE 137 (153)
Q Consensus 115 ----g~~~~~~~g~~~~~~i~~~l~~~ 137 (153)
......|.|..+.++|.+||...
T Consensus 77 ~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 77 SNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred hcccCcccccccCcCCHHHHHHHHHhh
Confidence 12234588888889999999754
No 211
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.045 Score=36.28 Aligned_cols=88 Identities=11% Similarity=0.109 Sum_probs=56.4
Q ss_pred CCccEEEEEE-cCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC---------------------chhhhhhCCCCc
Q 031790 48 KDTAWFVKFC-VPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA---------------------SKTLCSKVDIHS 105 (153)
Q Consensus 48 ~~~~vlv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~---------------------~~~~~~~~~v~~ 105 (153)
.+++|+++|| .+++|-|-...-.|.+....+... +..++-|..|. +..+++.|++..
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~-~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~ 107 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKL-GAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWG 107 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhC-CCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCccc
Confidence 3557788888 678899988888888888777652 56666665542 456778888744
Q ss_pred ------------cceEEEEe-CCeeeeeecCCC---CHHHHHHHHHH
Q 031790 106 ------------YPTFKVFY-DGKEVAKYQGPR---DVESLKTFVLE 136 (153)
Q Consensus 106 ------------~Pt~~~~~-~g~~~~~~~g~~---~~~~i~~~l~~ 136 (153)
.++.+++. +|.....+.... ..+++.+.|++
T Consensus 108 ~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~ 154 (157)
T COG1225 108 EKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKK 154 (157)
T ss_pred ccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHH
Confidence 34555664 677665553332 24455555543
No 212
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=96.69 E-value=0.039 Score=37.36 Aligned_cols=28 Identities=14% Similarity=0.116 Sum_probs=24.9
Q ss_pred EEEEEcCCChHHHhHHHHHHHHHHHhcC
Q 031790 53 FVKFCVPWCKHCKNLGSLWEDLGKAMEG 80 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~~~~~~~~ 80 (153)
+.+|+..-||+|-...+.+.++.+.+.+
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~ 29 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPD 29 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcC
Confidence 6789999999999999999999988843
No 213
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.034 Score=39.40 Aligned_cols=36 Identities=31% Similarity=0.529 Sum_probs=27.9
Q ss_pred hhhCCCCccceEEEEeCCeeeeeecCCCCHHHHHHHHHHHH
Q 031790 98 CSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFVLEEA 138 (153)
Q Consensus 98 ~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~i~~~l~~~~ 138 (153)
++++++.++|++++ +|+ .+.|..+.+++.+.|....
T Consensus 208 a~~~gv~gTPt~~v--~~~---~~~g~~~~~~l~~~i~~~~ 243 (244)
T COG1651 208 AQQLGVNGTPTFIV--NGK---LVPGLPDLDELKAIIDEAL 243 (244)
T ss_pred HHhcCCCcCCeEEE--CCe---eecCCCCHHHHHHHHHHhh
Confidence 34579999999987 444 6788888899988887653
No 214
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.60 E-value=0.021 Score=45.12 Aligned_cols=83 Identities=14% Similarity=0.190 Sum_probs=61.2
Q ss_pred CccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEeCCee-eeeecCCCCH
Q 031790 49 DTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYDGKE-VAKYQGPRDV 127 (153)
Q Consensus 49 ~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~-~~~~~g~~~~ 127 (153)
.++|-+.++.+.|..|.++...++++++.-+. +.+...+.+ ...|++.+..+|+. -.+|.|.+.-
T Consensus 18 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~---i~~~~~~~~-----------~~~p~~~~~~~~~~~~i~f~g~P~g 83 (517)
T PRK15317 18 ERPIELVASLDDSEKSAELKELLEEIASLSDK---ITVEEDSLD-----------VRKPSFSITRPGEDTGVRFAGIPMG 83 (517)
T ss_pred CCCEEEEEEeCCCchHHHHHHHHHHHHHhCCc---eEEEEccCC-----------CCCCEEEEEcCCccceEEEEecCcc
Confidence 55666666666899999999999999887654 666443311 34799999876643 3689999999
Q ss_pred HHHHHHHHHHHHhHhhhh
Q 031790 128 ESLKTFVLEEAEKAATKA 145 (153)
Q Consensus 128 ~~i~~~l~~~~~~~~~~~ 145 (153)
.++..||.....-+....
T Consensus 84 ~Ef~s~i~~i~~~~~~~~ 101 (517)
T PRK15317 84 HEFTSLVLALLQVGGHPP 101 (517)
T ss_pred HHHHHHHHHHHHhcCCCC
Confidence 999999988877655433
No 215
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=96.41 E-value=0.022 Score=32.60 Aligned_cols=59 Identities=10% Similarity=0.060 Sum_probs=48.4
Q ss_pred EEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEE
Q 031790 53 FVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVF 112 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 112 (153)
+..|-+..-+..+.....+.++.+.+. ...+.+-.||+.++|++++.+++-.+||++-.
T Consensus 4 L~Lyv~g~tp~S~~ai~nl~~i~e~~l-~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~ 62 (72)
T cd02978 4 LRLYVAGRTPKSERALQNLKRILEELL-GGPYELEVIDVLKQPQLAEEDKIVATPTLVKV 62 (72)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHhc-CCcEEEEEEEcccCHhHHhhCCEEEechhhhc
Confidence 455556666888888888888887775 34799999999999999999999999998643
No 216
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.38 E-value=0.037 Score=43.68 Aligned_cols=84 Identities=13% Similarity=0.237 Sum_probs=61.1
Q ss_pred CccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEeCCee-eeeecCCCCH
Q 031790 49 DTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYDGKE-VAKYQGPRDV 127 (153)
Q Consensus 49 ~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~-~~~~~g~~~~ 127 (153)
.++|-+.++.+.|..|.++...++++++.-+. +.+...+.+. ...|++.+..+|+. -.+|.|.+.-
T Consensus 18 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~k---i~~~~~~~~~----------~~~p~~~~~~~~~~~~i~f~g~P~g 84 (515)
T TIGR03140 18 ENPVTLVLSAGSHEKSKELLELLDEIASLSDK---ISLTQNTADT----------LRKPSFTILRDGADTGIRFAGIPGG 84 (515)
T ss_pred CCCEEEEEEeCCCchhHHHHHHHHHHHHhCCC---eEEEEecCCc----------CCCCeEEEecCCcccceEEEecCCc
Confidence 55665555555899999999999999887654 6665444221 34699988877653 3689999999
Q ss_pred HHHHHHHHHHHHhHhhhh
Q 031790 128 ESLKTFVLEEAEKAATKA 145 (153)
Q Consensus 128 ~~i~~~l~~~~~~~~~~~ 145 (153)
.++..||.....-+....
T Consensus 85 ~Ef~s~i~~i~~~~~~~~ 102 (515)
T TIGR03140 85 HEFTSLVLAILQVGGHGP 102 (515)
T ss_pred HHHHHHHHHHHHhcCCCC
Confidence 999999988877665443
No 217
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=96.29 E-value=0.027 Score=36.98 Aligned_cols=56 Identities=20% Similarity=0.360 Sum_probs=38.2
Q ss_pred EEEEEcC------CChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhh----hhCCC----CccceEEEEeCCeee
Q 031790 53 FVKFCVP------WCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLC----SKVDI----HSYPTFKVFYDGKEV 118 (153)
Q Consensus 53 lv~f~~~------~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~v----~~~Pt~~~~~~g~~~ 118 (153)
++.|+++ +|++|+..+..|+.. ++.|..+|++.+++.. +..+- ..+|.+++ +|+.+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~--------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~~I 71 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF--------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGRYL 71 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCEEE
Confidence 3456666 899999988777653 3778888887765433 33343 67898876 67544
No 218
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=96.23 E-value=0.12 Score=31.21 Aligned_cols=73 Identities=16% Similarity=0.227 Sum_probs=51.3
Q ss_pred CccE-EEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEeCCee-eeeecCCCC
Q 031790 49 DTAW-FVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYDGKE-VAKYQGPRD 126 (153)
Q Consensus 49 ~~~v-lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~-~~~~~g~~~ 126 (153)
.++| ++.|..+. ..|..+...+++++..-+. +.+...+.+. ..|++.+..+|+. -.+|.|.+.
T Consensus 18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSdk---I~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP~ 82 (94)
T cd02974 18 ENPVELVASLDDS-EKSAELLELLEEIASLSDK---ITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIPM 82 (94)
T ss_pred CCCEEEEEEeCCC-cchHHHHHHHHHHHHhCCc---eEEEEecCCC-----------CCCEEEEecCCCcccEEEEecCC
Confidence 4454 55555555 9999999999998887653 6664433221 4799999877643 258999988
Q ss_pred HHHHHHHHHH
Q 031790 127 VESLKTFVLE 136 (153)
Q Consensus 127 ~~~i~~~l~~ 136 (153)
-.++..+|..
T Consensus 83 GhEf~Slila 92 (94)
T cd02974 83 GHEFTSLVLA 92 (94)
T ss_pred chhHHHHHHH
Confidence 8888888864
No 219
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=96.06 E-value=0.17 Score=31.26 Aligned_cols=104 Identities=13% Similarity=0.176 Sum_probs=74.4
Q ss_pred EEeCcccHHHHhcc-CCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhh----hCCCC-ccc
Q 031790 34 ITLTPDTFTDKVKE-KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCS----KVDIH-SYP 107 (153)
Q Consensus 34 ~~l~~~~~~~~~~~-~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~----~~~v~-~~P 107 (153)
+.++.+++.+.=.+ -++..++.|-.+.-+.-.++.+.++++|+....+.++.|+-||-++-|-+.. .|+|. .-|
T Consensus 4 rkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~P 83 (120)
T cd03074 4 RKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRP 83 (120)
T ss_pred hhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCC
Confidence 34455554444432 2456688888888999999999999999999888899999999998776654 45554 359
Q ss_pred eEEEEe--CCeeee-eecC---CCCHHHHHHHHHHH
Q 031790 108 TFKVFY--DGKEVA-KYQG---PRDVESLKTFVLEE 137 (153)
Q Consensus 108 t~~~~~--~g~~~~-~~~g---~~~~~~i~~~l~~~ 137 (153)
.+-+++ +.+.+. ...+ ..+.+++..||+..
T Consensus 84 qIGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 84 QIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred ceeeEecccccceeEecccccccCcHHHHHHHHHhh
Confidence 888875 333332 2233 36789999999875
No 220
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=95.98 E-value=0.082 Score=34.10 Aligned_cols=73 Identities=21% Similarity=0.319 Sum_probs=52.5
Q ss_pred EEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCC----ccceEEEEeCCeeeeeecCCCCHH
Q 031790 53 FVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIH----SYPTFKVFYDGKEVAKYQGPRDVE 128 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~----~~Pt~~~~~~g~~~~~~~g~~~~~ 128 (153)
++.+++|.|+=|..+...++. +++.+-.+..++-..+.++++|. +--|.++ +|. .+.|..+.+
T Consensus 28 ~~vyksPnCGCC~~w~~~mk~--------~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~Gy---~vEGHVPa~ 94 (149)
T COG3019 28 MVVYKSPNCGCCDEWAQHMKA--------NGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NGY---YVEGHVPAE 94 (149)
T ss_pred EEEEeCCCCccHHHHHHHHHh--------CCcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cCE---EEeccCCHH
Confidence 778999999999887765541 24777777766666677777764 4455544 775 447899999
Q ss_pred HHHHHHHHHH
Q 031790 129 SLKTFVLEEA 138 (153)
Q Consensus 129 ~i~~~l~~~~ 138 (153)
.|..++.+.-
T Consensus 95 aI~~ll~~~p 104 (149)
T COG3019 95 AIARLLAEKP 104 (149)
T ss_pred HHHHHHhCCC
Confidence 9999986543
No 221
>PRK09301 circadian clock protein KaiB; Provisional
Probab=95.86 E-value=0.062 Score=32.87 Aligned_cols=81 Identities=12% Similarity=0.034 Sum_probs=61.7
Q ss_pred CccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEeCCeeeeeecCCCC-H
Q 031790 49 DTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRD-V 127 (153)
Q Consensus 49 ~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~-~ 127 (153)
...++=.|.+..-+..+.....+.++.+.+... .+.+-.||+.++|++++.+++-.+||++-... .+..+..|..+ .
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g-~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P-~P~rriiGDlsd~ 82 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFKG-VYALKVIDVLKNPQLAEEDKILATPTLAKILP-PPVRKIIGDLSDR 82 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCC-ceEEEEEEcccCHhHHhHCCeEEecHHhhcCC-CCcceeecccccH
Confidence 345677788888889988888888887766542 48888999999999999999999999765433 34557788754 3
Q ss_pred HHHH
Q 031790 128 ESLK 131 (153)
Q Consensus 128 ~~i~ 131 (153)
+.+.
T Consensus 83 ~kVL 86 (103)
T PRK09301 83 EKVL 86 (103)
T ss_pred HHHH
Confidence 4443
No 222
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=95.85 E-value=0.072 Score=31.62 Aligned_cols=74 Identities=11% Similarity=0.016 Sum_probs=57.7
Q ss_pred cEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEeCCeeeeeecCCCC
Q 031790 51 AWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRD 126 (153)
Q Consensus 51 ~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~ 126 (153)
.++=.|.+..-+.++.....+.++.+..... .+.+--||+.++|++++.+++-.+||++-... .+..+..|..+
T Consensus 4 ~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g-~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P-~P~rriiGdls 77 (87)
T TIGR02654 4 YVLKLYVAGNTPNSVRALKTLKNILETEFQG-VYALKVIDVLKNPQLAEEDKILATPTLSKILP-PPVRKIIGDLS 77 (87)
T ss_pred EEEEEEEeCCCchHHHHHHHHHHHHHHhcCC-ceEEEEEEcccCHhHHhHCCEEEecHHhhcCC-CCcceeecccc
Confidence 4566677888888988888888887766542 48888999999999999999999999775433 24556777754
No 223
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.032 Score=31.94 Aligned_cols=56 Identities=21% Similarity=0.255 Sum_probs=36.7
Q ss_pred EEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCc--------------h--hhhhhCCCCccceEEEEeCCee
Q 031790 54 VKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGAS--------------K--TLCSKVDIHSYPTFKVFYDGKE 117 (153)
Q Consensus 54 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~--------------~--~~~~~~~v~~~Pt~~~~~~g~~ 117 (153)
+.|+|.-||.|..+...++++. +.+-.|++... + +-.+..+--++|.+.+ .+|+.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~--------v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~-~d~~v 75 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN--------VDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT-DDGKV 75 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC--------CCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe-CCCcE
Confidence 5699999999998887776653 33334444321 1 2245667789999866 56665
Q ss_pred e
Q 031790 118 V 118 (153)
Q Consensus 118 ~ 118 (153)
+
T Consensus 76 V 76 (85)
T COG4545 76 V 76 (85)
T ss_pred E
Confidence 4
No 224
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=95.29 E-value=0.23 Score=37.89 Aligned_cols=92 Identities=13% Similarity=0.135 Sum_probs=65.2
Q ss_pred cCCccEEEEEEcCCChHHHhHHHH-H-HHHHHHhcCCCCeEEEEeeCCC--chhhhhhCCCCccceEEEEe-CCeeeeee
Q 031790 47 EKDTAWFVKFCVPWCKHCKNLGSL-W-EDLGKAMEGDDEIEVGEVDCGA--SKTLCSKVDIHSYPTFKVFY-DGKEVAKY 121 (153)
Q Consensus 47 ~~~~~vlv~f~~~~C~~C~~~~~~-~-~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~-~g~~~~~~ 121 (153)
+.++.+||.|-+........+... | .+...... .+.+..++|+... ..+++.-|.+..+|+++++- .|..+...
T Consensus 16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~l-s~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevi 94 (506)
T KOG2507|consen 16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSL-SKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVI 94 (506)
T ss_pred hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhh-hcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEe
Confidence 356777888888777777776622 2 22222111 2356677777653 45778889999999999985 89999999
Q ss_pred cCCCCHHHHHHHHHHHHH
Q 031790 122 QGPRDVESLKTFVLEEAE 139 (153)
Q Consensus 122 ~g~~~~~~i~~~l~~~~~ 139 (153)
.|....+++..-|++..-
T Consensus 95 tg~v~adeL~~~i~Kv~~ 112 (506)
T KOG2507|consen 95 TGFVTADELASSIEKVWL 112 (506)
T ss_pred eccccHHHHHHHHHHHHH
Confidence 999999998888777644
No 225
>PHA03075 glutaredoxin-like protein; Provisional
Probab=95.12 E-value=0.048 Score=33.95 Aligned_cols=30 Identities=17% Similarity=0.492 Sum_probs=24.2
Q ss_pred ccEEEEEEcCCChHHHhHHHHHHHHHHHhc
Q 031790 50 TAWFVKFCVPWCKHCKNLGSLWEDLGKAME 79 (153)
Q Consensus 50 ~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~ 79 (153)
+.++|.|..|.|+-|+.....++++..+|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 356999999999999999988866655543
No 226
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=95.08 E-value=0.0084 Score=43.60 Aligned_cols=88 Identities=23% Similarity=0.327 Sum_probs=66.8
Q ss_pred CccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEee-CCCchhhhhhCCCCccceEEEEeCCeeeeeecCCCCH
Q 031790 49 DTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVD-CGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDV 127 (153)
Q Consensus 49 ~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd-~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~ 127 (153)
..++=..||+.|||..+..+|.+.-....+.. +....++ ...-+.+..+|++.+.|++.+.... -..+|-|..+.
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~---i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t-~~~~~~~~r~l 151 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS---IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQT-CPASYRGERDL 151 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhccc---cccccHHHHhhcccchhccccccCCcceeeccc-cchhhcccccH
Confidence 34678899999999999999988777766663 2222233 2244677889999999999887444 45588999999
Q ss_pred HHHHHHHHHHHHh
Q 031790 128 ESLKTFVLEEAEK 140 (153)
Q Consensus 128 ~~i~~~l~~~~~~ 140 (153)
.++.++..+....
T Consensus 152 ~sLv~fy~~i~~~ 164 (319)
T KOG2640|consen 152 ASLVNFYTEITPM 164 (319)
T ss_pred HHHHHHHHhhccc
Confidence 9999999888763
No 227
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=95.06 E-value=0.031 Score=34.35 Aligned_cols=33 Identities=18% Similarity=0.203 Sum_probs=23.9
Q ss_pred EEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCc
Q 031790 54 VKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGAS 94 (153)
Q Consensus 54 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~ 94 (153)
..|+.++|+.|+.....+++. ++.|-.+|+.++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~ 34 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH--------GIEYEFIDYLKE 34 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc--------CCCcEEEeeccC
Confidence 568999999999988666552 356666776543
No 228
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=94.96 E-value=0.59 Score=30.29 Aligned_cols=91 Identities=11% Similarity=0.078 Sum_probs=63.6
Q ss_pred cCCccEEEEEEcCCChHHHhHHHHH---HHHHHHhcCCCCeEEEEeeCCCch------------------hhhhhCCCCc
Q 031790 47 EKDTAWFVKFCVPWCKHCKNLGSLW---EDLGKAMEGDDEIEVGEVDCGASK------------------TLCSKVDIHS 105 (153)
Q Consensus 47 ~~~~~vlv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd~~~~~------------------~~~~~~~v~~ 105 (153)
++.|+.+|+.++|.-+.+..+-..+ +.+.+-+.+ ++.+-.-|+.... ..++.++...
T Consensus 19 ~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~--nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~ 96 (136)
T cd02990 19 RDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQ--NFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQ 96 (136)
T ss_pred hhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHc--CEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCC
Confidence 3478889999988765554444433 344444444 6888888876532 2455678999
Q ss_pred cceEEEEe--CC--eeeeeecCCCCHHHHHHHHHHHHH
Q 031790 106 YPTFKVFY--DG--KEVAKYQGPRDVESLKTFVLEEAE 139 (153)
Q Consensus 106 ~Pt~~~~~--~g--~~~~~~~g~~~~~~i~~~l~~~~~ 139 (153)
+|.+.++- .+ ..+.+..|..+++++..-|...++
T Consensus 97 fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ve 134 (136)
T cd02990 97 LPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAME 134 (136)
T ss_pred CCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHHh
Confidence 99998884 22 567888999999999988877654
No 229
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=94.75 E-value=0.072 Score=35.21 Aligned_cols=42 Identities=10% Similarity=0.075 Sum_probs=28.9
Q ss_pred ccEEEEEEcCCChHHHhH-HHHHHHHHHHhcCCCCe-EEEEeeCC
Q 031790 50 TAWFVKFCVPWCKHCKNL-GSLWEDLGKAMEGDDEI-EVGEVDCG 92 (153)
Q Consensus 50 ~~vlv~f~~~~C~~C~~~-~~~~~~~~~~~~~~~~~-~~~~vd~~ 92 (153)
..+++.|.+.||+.|... .+.+.+..+.+... +. .++.|..+
T Consensus 31 ~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~-g~~~V~~iS~D 74 (155)
T cd03013 31 KVVIFGVPGAFTPTCSAQHLPGYVENADELKAK-GVDEVICVSVN 74 (155)
T ss_pred cEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHC-CCCEEEEEECC
Confidence 344555558899999987 88888888887642 44 35555544
No 230
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=94.74 E-value=0.16 Score=32.68 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=35.1
Q ss_pred chhhhhhCCCCccceEEEEeCCe-----------eeeeecCCCCHHHHHHHHHHH
Q 031790 94 SKTLCSKVDIHSYPTFKVFYDGK-----------EVAKYQGPRDVESLKTFVLEE 137 (153)
Q Consensus 94 ~~~~~~~~~v~~~Pt~~~~~~g~-----------~~~~~~g~~~~~~i~~~l~~~ 137 (153)
+|.+-++|+|+.+|++++.+++. ......|..+.+.-.+.+.+.
T Consensus 60 dP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~~ 114 (130)
T TIGR02742 60 DPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQD 114 (130)
T ss_pred ChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHHh
Confidence 39999999999999999998764 466778888877766666544
No 231
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=94.68 E-value=0.16 Score=28.98 Aligned_cols=73 Identities=16% Similarity=0.198 Sum_probs=41.2
Q ss_pred EEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEeC--CeeeeeecCCCCHHHH
Q 031790 53 FVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYD--GKEVAKYQGPRDVESL 130 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~--g~~~~~~~g~~~~~~i 130 (153)
+..|+.+.|+.|++..-.+....- .+.+..+|.....++ +.-+-..+|++..-.+ |.. -.+...|
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi------~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~------l~eS~~I 68 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGI------PYEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQ------LVDSSVI 68 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCC------ceEEEECCchhHHHH-HHhCCCccCEEEECCCCCccE------EEcHHHH
Confidence 456888999999998855443311 133333443222233 2345568998865321 322 2355777
Q ss_pred HHHHHHHH
Q 031790 131 KTFVLEEA 138 (153)
Q Consensus 131 ~~~l~~~~ 138 (153)
.++|++.+
T Consensus 69 ~~yL~~~~ 76 (77)
T cd03040 69 ISTLKTYL 76 (77)
T ss_pred HHHHHHHc
Confidence 78887654
No 232
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=94.63 E-value=0.21 Score=31.25 Aligned_cols=45 Identities=20% Similarity=0.301 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEeC
Q 031790 66 NLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYD 114 (153)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 114 (153)
.+.+....+.+.........=+.|| |.+-++|+|+.+|++++-++
T Consensus 36 ~~~~t~~~~~~l~~~~~~~~~v~Id----P~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPCPGVQID----PRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCCcceeEC----hhHHhhCCceEcCEEEEEcC
Confidence 6677776666666542222223333 99999999999999999877
No 233
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=94.45 E-value=0.49 Score=27.08 Aligned_cols=70 Identities=11% Similarity=0.178 Sum_probs=39.4
Q ss_pred EEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCc----hhhhhhCCCCccceEEEEeCCeeeeeecCCCCHH
Q 031790 53 FVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGAS----KTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVE 128 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~----~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~ 128 (153)
+..++.++|++|++..-.+++. ++.+-.++++.. +++.+...-..+|++..-.+|.. .....
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~--------gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~------l~es~ 67 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTEL--------ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQ------MFESA 67 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHc--------CCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeE------EEcHH
Confidence 3467788999999877554443 233333444432 23333335568898843222322 23557
Q ss_pred HHHHHHHH
Q 031790 129 SLKTFVLE 136 (153)
Q Consensus 129 ~i~~~l~~ 136 (153)
.|.++|.+
T Consensus 68 ~I~~yL~~ 75 (77)
T cd03041 68 DIVKYLFK 75 (77)
T ss_pred HHHHHHHH
Confidence 77777765
No 234
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=94.13 E-value=0.091 Score=32.69 Aligned_cols=34 Identities=12% Similarity=0.316 Sum_probs=24.7
Q ss_pred EEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCch
Q 031790 54 VKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASK 95 (153)
Q Consensus 54 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~ 95 (153)
..|+.++|+.|++....+++- ++.|-.+|+.+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~ 35 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH--------GVDYTAIDIVEEP 35 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc--------CCceEEecccCCc
Confidence 468899999999988666552 4667777766543
No 235
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=94.11 E-value=0.11 Score=32.68 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=25.3
Q ss_pred EEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCch
Q 031790 54 VKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASK 95 (153)
Q Consensus 54 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~ 95 (153)
..|+.++|+.|++....+++. ++.+-.+|+.+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN--------GIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc--------CCceEEEecCCCh
Confidence 468899999999988776662 4667777776544
No 236
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=93.90 E-value=0.17 Score=28.34 Aligned_cols=68 Identities=12% Similarity=0.126 Sum_probs=35.2
Q ss_pred EEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEeCCeeeeeecCCCCHHHHHHHH
Q 031790 55 KFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFV 134 (153)
Q Consensus 55 ~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~i~~~l 134 (153)
.++.++|++|++..-.+... + -.+....++........+...-..+|++.. .+|..+ .+...|.++|
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~-----g-l~~~~~~~~~~~~~~~~~~~~~~~vP~L~~-~~~~~l------~es~aI~~yL 69 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLK-----N-IPVEQIILQNDDEATPIRMIGAKQVPILEK-DDGSFM------AESLDIVAFI 69 (71)
T ss_pred eEecCCCcHhHHHHHHHHHc-----C-CCeEEEECCCCchHHHHHhcCCCccCEEEe-CCCeEe------ehHHHHHHHH
Confidence 46788999999877554433 2 013333444332222223334457888743 334322 2445666665
Q ss_pred H
Q 031790 135 L 135 (153)
Q Consensus 135 ~ 135 (153)
.
T Consensus 70 ~ 70 (71)
T cd03037 70 D 70 (71)
T ss_pred h
Confidence 3
No 237
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=93.71 E-value=0.063 Score=31.57 Aligned_cols=55 Identities=15% Similarity=0.109 Sum_probs=43.4
Q ss_pred EEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEE
Q 031790 56 FCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKV 111 (153)
Q Consensus 56 f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 111 (153)
|-+..-+........+..+.+...+ .++.+-.||+.++|++++.+++-.+||++-
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~-~~~~LeVIDv~~~P~lAe~~~ivAtPtLik 57 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLG-GRYELEVIDVLEQPELAEEDRIVATPTLIK 57 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCT-TTEEEEEEETTTSHSHHTTTEEECHHHHHT
T ss_pred EECCCChHHHHHHHHHHHHHHhhCC-CcEEEEEEEcccCHhHHhHCCeeecceEee
Confidence 3444455667777788888776543 479999999999999999999999999863
No 238
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=93.64 E-value=0.14 Score=32.85 Aligned_cols=33 Identities=21% Similarity=0.403 Sum_probs=22.7
Q ss_pred EEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031790 53 FVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA 93 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~ 93 (153)
+..|+.++|+.|++....+++. ++.|-.+|+.+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~--------gi~~~~idi~~ 34 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH--------DIPFTERNIFS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc--------CCCcEEeeccC
Confidence 4578899999999987665543 35555566543
No 239
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=93.23 E-value=0.22 Score=27.94 Aligned_cols=57 Identities=12% Similarity=0.159 Sum_probs=35.1
Q ss_pred EEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC-chhhhhhCCCCccceEEEEeCCee
Q 031790 54 VKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA-SKTLCSKVDIHSYPTFKVFYDGKE 117 (153)
Q Consensus 54 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~v~~~Pt~~~~~~g~~ 117 (153)
..|+.+||++|++..-.+++..- .+.+..+|... .+++.+......+|++.. .+|..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl------~~e~~~v~~~~~~~~~~~~np~~~vP~L~~-~~g~~ 59 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI------TVELREVELKNKPAEMLAASPKGTVPVLVL-GNGTV 59 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC------CcEEEEeCCCCCCHHHHHHCCCCCCCEEEE-CCCcE
Confidence 35678999999988755443321 35556666543 345555556678999853 23543
No 240
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=92.86 E-value=2.4 Score=30.40 Aligned_cols=34 Identities=6% Similarity=-0.107 Sum_probs=24.6
Q ss_pred cCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcC
Q 031790 47 EKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEG 80 (153)
Q Consensus 47 ~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~ 80 (153)
.++|+.+++..+.|||.|...+=.+-....++..
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn 89 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGN 89 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhcCC
Confidence 4688999999999999997755444444444544
No 241
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=92.83 E-value=1.4 Score=27.15 Aligned_cols=90 Identities=11% Similarity=0.132 Sum_probs=54.5
Q ss_pred cccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEeCC--
Q 031790 38 PDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYDG-- 115 (153)
Q Consensus 38 ~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g-- 115 (153)
.+++++.+...+..++|-|+..--+ .....+.++|..+.+ ++.|+... +..+.+++++. -|.+++|+..
T Consensus 8 ~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rd--d~~F~~t~---~~~~~~~~~~~-~~~vvl~rp~~~ 78 (107)
T cd03068 8 LKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLRE--DYKFHHTF---DSEIFKSLKVS-PGQLVVFQPEKF 78 (107)
T ss_pred HHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhccc--CCEEEEEC---hHHHHHhcCCC-CCceEEECcHHH
Confidence 4556666655424556666665433 345677888888865 57786544 34666777775 4667777221
Q ss_pred -----eeeeeecCC-CCHHH-HHHHHHH
Q 031790 116 -----KEVAKYQGP-RDVES-LKTFVLE 136 (153)
Q Consensus 116 -----~~~~~~~g~-~~~~~-i~~~l~~ 136 (153)
.....|.|. .+.++ |.+||..
T Consensus 79 ~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 79 QSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred hhhcCcceeeeeccccchHHHHHHHHhc
Confidence 123355666 46555 9999864
No 242
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.76 E-value=0.67 Score=35.07 Aligned_cols=100 Identities=14% Similarity=0.148 Sum_probs=67.7
Q ss_pred CCceEEeCcccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceE
Q 031790 30 KSEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTF 109 (153)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 109 (153)
.+....++++-+++.-.-++...+=-|++-.|..|-..-..+.-.+-.-+ ++.-..||-.--++-.+.-+|-++|++
T Consensus 97 ~G~ppk~~q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp---~I~H~~IdGa~Fq~Evear~IMaVPtv 173 (520)
T COG3634 97 GGHPPKEDQDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNP---RIKHTAIDGALFQDEVEARNIMAVPTV 173 (520)
T ss_pred cCCCCchhHHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCC---CceeEEecchhhHhHHHhccceecceE
Confidence 44455555555555544345556888889999999777666655544433 588888886655555566789999998
Q ss_pred EEEeCCeeeeeecCCCCHHHHHHHHHH
Q 031790 110 KVFYDGKEVAKYQGPRDVESLKTFVLE 136 (153)
Q Consensus 110 ~~~~~g~~~~~~~g~~~~~~i~~~l~~ 136 (153)
++ ||+.. -.|..+.++|..-+..
T Consensus 174 fl--nGe~f--g~GRmtleeilaki~~ 196 (520)
T COG3634 174 FL--NGEEF--GQGRMTLEEILAKIDT 196 (520)
T ss_pred EE--cchhh--cccceeHHHHHHHhcC
Confidence 76 77644 3677888888776654
No 243
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.70 E-value=0.2 Score=35.21 Aligned_cols=45 Identities=22% Similarity=0.344 Sum_probs=35.8
Q ss_pred hhhhhCCCCccceEEEEeCCeeeeeecCCCCHHHHHHHHHHHHHhHhhh
Q 031790 96 TLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFVLEEAEKAATK 144 (153)
Q Consensus 96 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~i~~~l~~~~~~~~~~ 144 (153)
..+++.+|+++|++++ +|+ ....|..+.+.+...|.+.++..+..
T Consensus 175 ~~A~e~gI~gVP~fv~--d~~--~~V~Gaq~~~v~~~al~~~~~~~~~~ 219 (225)
T COG2761 175 AAAQEMGIRGVPTFVF--DGK--YAVSGAQPYDVLEDALRQLLAEKAEE 219 (225)
T ss_pred HHHHHCCCccCceEEE--cCc--EeecCCCCHHHHHHHHHHHHhccccc
Confidence 3467899999999988 332 24589999999999999998876643
No 244
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=92.60 E-value=1.5 Score=31.53 Aligned_cols=92 Identities=16% Similarity=0.225 Sum_probs=55.4
Q ss_pred CccEEEEEEcCCChH-HHhHHHHHHHHHHHhcCCCCe----EEEEeeCCCc--------------------------hhh
Q 031790 49 DTAWFVKFCVPWCKH-CKNLGSLWEDLGKAMEGDDEI----EVGEVDCGAS--------------------------KTL 97 (153)
Q Consensus 49 ~~~vlv~f~~~~C~~-C~~~~~~~~~~~~~~~~~~~~----~~~~vd~~~~--------------------------~~~ 97 (153)
++-++++|.-+.||. |-.....+-.+.+......++ .|+.+|-..+ .++
T Consensus 139 Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~v 218 (280)
T KOG2792|consen 139 GKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQV 218 (280)
T ss_pred cceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHHH
Confidence 466799999999964 654444444444444332222 5777776432 234
Q ss_pred hhhCCCCcc--c-----------eEEEE---eCCeeeeeecCCCCHHHHHHHHHHHHHh
Q 031790 98 CSKVDIHSY--P-----------TFKVF---YDGKEVAKYQGPRDVESLKTFVLEEAEK 140 (153)
Q Consensus 98 ~~~~~v~~~--P-----------t~~~~---~~g~~~~~~~g~~~~~~i~~~l~~~~~~ 140 (153)
|++|.|..- | |+++| ++|+.+..|--..+.+++.+-|..++..
T Consensus 219 ak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~~ 277 (280)
T KOG2792|consen 219 AKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVAS 277 (280)
T ss_pred HHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHHh
Confidence 667766532 2 44444 4777665444457889998888777654
No 245
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.57 E-value=0.28 Score=33.65 Aligned_cols=45 Identities=11% Similarity=0.167 Sum_probs=36.4
Q ss_pred hhhhhhCCCCccceEEEEeCCeeeeeecC--CCCHHHHHHHHHHHHH
Q 031790 95 KTLCSKVDIHSYPTFKVFYDGKEVAKYQG--PRDVESLKTFVLEEAE 139 (153)
Q Consensus 95 ~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g--~~~~~~i~~~l~~~~~ 139 (153)
..+++++++.++||+++-+||+....-.| ..+.+++..++.+.+.
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~~ 210 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRLA 210 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHHh
Confidence 45678899999999999999987766677 4577888888877653
No 246
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=92.23 E-value=2.8 Score=29.16 Aligned_cols=92 Identities=18% Similarity=0.232 Sum_probs=59.3
Q ss_pred CCccEEEEEEcCCC-hHHHhHHHHHHHHHHHhc-C-CCCeEE--EEeeCCCc-h--------------------------
Q 031790 48 KDTAWFVKFCVPWC-KHCKNLGSLWEDLGKAME-G-DDEIEV--GEVDCGAS-K-------------------------- 95 (153)
Q Consensus 48 ~~~~vlv~f~~~~C-~~C~~~~~~~~~~~~~~~-~-~~~~~~--~~vd~~~~-~-------------------------- 95 (153)
.+++++|.|.=..| ..|-.....+..+.+... . ..++.+ +.+|-+.+ +
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~~ltg~~~~~~ 145 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWIGLTGTPEQIE 145 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCeeeeeCCHHHHH
Confidence 46788999987888 568888888888877776 2 234444 44544321 1
Q ss_pred hhhhhCCCCc---------------cceEEEEe-CCeeeeeecCCCCHHHHHHHHHHHHH
Q 031790 96 TLCSKVDIHS---------------YPTFKVFY-DGKEVAKYQGPRDVESLKTFVLEEAE 139 (153)
Q Consensus 96 ~~~~~~~v~~---------------~Pt~~~~~-~g~~~~~~~g~~~~~~i~~~l~~~~~ 139 (153)
.+++.|++.. ...++++. +|+....+.+..+.+.+.+.++..+.
T Consensus 146 ~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~~ 205 (207)
T COG1999 146 EVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLLK 205 (207)
T ss_pred HHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHhh
Confidence 2234444442 12344554 88888788777778888888877654
No 247
>PRK12559 transcriptional regulator Spx; Provisional
Probab=92.21 E-value=0.32 Score=31.24 Aligned_cols=21 Identities=19% Similarity=0.518 Sum_probs=16.7
Q ss_pred EEEEEcCCChHHHhHHHHHHH
Q 031790 53 FVKFCVPWCKHCKNLGSLWED 73 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~ 73 (153)
+..|+.++|+.|++....+++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~ 22 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEE 22 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 567889999999998765554
No 248
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=92.04 E-value=0.4 Score=29.96 Aligned_cols=34 Identities=18% Similarity=0.333 Sum_probs=24.0
Q ss_pred EEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCc
Q 031790 53 FVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGAS 94 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~ 94 (153)
+..|+.++|+.|++....+++. ++.+-.+|+.++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~--------gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH--------QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC--------CCceEEEecCCC
Confidence 4568899999999988766653 355666666543
No 249
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=91.89 E-value=0.2 Score=30.91 Aligned_cols=33 Identities=12% Similarity=0.110 Sum_probs=23.3
Q ss_pred EEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCc
Q 031790 54 VKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGAS 94 (153)
Q Consensus 54 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~ 94 (153)
..|+.|+|+.|++....+++- ++.|-.+|..++
T Consensus 2 ~iy~~~~C~~crka~~~L~~~--------~i~~~~~di~~~ 34 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR--------GVAYTFHDYRKD 34 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc--------CCCeEEEecccC
Confidence 568899999999988665543 355666666544
No 250
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=91.72 E-value=2.7 Score=27.86 Aligned_cols=90 Identities=17% Similarity=0.248 Sum_probs=59.4
Q ss_pred CCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC--------ch---hhhh-hCCCC-----------
Q 031790 48 KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA--------SK---TLCS-KVDIH----------- 104 (153)
Q Consensus 48 ~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~--------~~---~~~~-~~~v~----------- 104 (153)
.+++++|.=.|+-|+.-.. ...++.+++++++ .++.+...-|+. +. .+|+ .|+|+
T Consensus 24 ~GkVlLIVNtASkCGfTpQ-YegLe~Ly~ky~~-~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~YgVtFp~f~Ki~VnG 101 (162)
T COG0386 24 KGKVLLIVNTASKCGFTPQ-YEGLEALYKKYKD-KGFEVLGFPCNQFGGQEPGSDEEIAKFCQLNYGVTFPMFSKIDVNG 101 (162)
T ss_pred CCcEEEEEEcccccCCcHh-HHHHHHHHHHHhh-CCcEEEeccccccccCCCCCHHHHHHHHHhccCceeeeeeEEeecC
Confidence 4778888889999988654 3466777777775 467777666652 11 1221 12211
Q ss_pred ------------c-------------cceEEEEeCCeeeeeecCCCCHHHHHHHHHHHHH
Q 031790 105 ------------S-------------YPTFKVFYDGKEVAKYQGPRDVESLKTFVLEEAE 139 (153)
Q Consensus 105 ------------~-------------~Pt~~~~~~g~~~~~~~g~~~~~~i~~~l~~~~~ 139 (153)
. +=-+++=++|+++.||.....++++...|+..++
T Consensus 102 ~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL~ 161 (162)
T COG0386 102 KNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLLA 161 (162)
T ss_pred CCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHhc
Confidence 1 1134555699999999988888888888877654
No 251
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=91.25 E-value=0.41 Score=25.92 Aligned_cols=51 Identities=16% Similarity=0.199 Sum_probs=31.3
Q ss_pred EEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchh--hhhhCCCCccceEEE
Q 031790 55 KFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKT--LCSKVDIHSYPTFKV 111 (153)
Q Consensus 55 ~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~--~~~~~~v~~~Pt~~~ 111 (153)
.|+.++|+.|.+..-.++...- .+....++...... +.+...-..+|++..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i------~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGL------PYELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCC------CcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 5788999999987766554421 24445555433222 344566778898764
No 252
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=90.59 E-value=0.58 Score=26.08 Aligned_cols=52 Identities=15% Similarity=0.226 Sum_probs=32.2
Q ss_pred EEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC----chhhhhhCCCCccceEEE
Q 031790 54 VKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA----SKTLCSKVDIHSYPTFKV 111 (153)
Q Consensus 54 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~~ 111 (153)
..|+.++|++|++..-.+....- .+....++... .+++.+......+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l------~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGI------DVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCC------CceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 35778899999998866554421 24445555432 234455555668899864
No 253
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=90.26 E-value=0.72 Score=29.67 Aligned_cols=32 Identities=16% Similarity=0.390 Sum_probs=21.5
Q ss_pred EEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031790 53 FVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCG 92 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~ 92 (153)
+..|+.++|+.|+.....+++- ++.|-.+|+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~--------~i~~~~~d~~ 33 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH--------QLSYKEQNLG 33 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc--------CCCeEEEECC
Confidence 4568899999999977555432 3555555554
No 254
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=90.21 E-value=1.2 Score=30.07 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=32.4
Q ss_pred CCccEEEEEEcCCC-hHHHhHHHHHHHHHHHhcC-CCCeEEEEeeCC
Q 031790 48 KDTAWFVKFCVPWC-KHCKNLGSLWEDLGKAMEG-DDEIEVGEVDCG 92 (153)
Q Consensus 48 ~~~~vlv~f~~~~C-~~C~~~~~~~~~~~~~~~~-~~~~~~~~vd~~ 92 (153)
.+++++|.|.-..| ..|-.....+.++.+.+.. ..++.++.|.+|
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD 97 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD 97 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC
Confidence 46788999999999 6798888888888776654 235666666655
No 255
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=89.99 E-value=2.1 Score=23.74 Aligned_cols=69 Identities=13% Similarity=0.127 Sum_probs=39.2
Q ss_pred EEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC-chhhhhhCCCCccceEEEEeCCeeeeeecCCCCHHHHHH
Q 031790 54 VKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA-SKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKT 132 (153)
Q Consensus 54 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~i~~ 132 (153)
..|+.++|+.|++..-.++...- .+....+|... .+++.+......+|++. .+|..+ .....|.+
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi------~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~l------~es~aI~~ 67 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGV------SVEIIDVDPDNPPEDLAELNPYGTVPTLV--DRDLVL------YESRIIME 67 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCC------ccEEEEcCCCCCCHHHHhhCCCCCCCEEE--ECCEEE------EcHHHHHH
Confidence 45788999999998755543322 23344455432 23444445566899774 344322 24566666
Q ss_pred HHHH
Q 031790 133 FVLE 136 (153)
Q Consensus 133 ~l~~ 136 (153)
+|.+
T Consensus 68 yL~~ 71 (73)
T cd03059 68 YLDE 71 (73)
T ss_pred HHHh
Confidence 6654
No 256
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=89.96 E-value=2.3 Score=24.04 Aligned_cols=71 Identities=15% Similarity=0.163 Sum_probs=46.2
Q ss_pred EEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC-chhhhhhCCCCccceEEEEeCCeeeeeecCCCCHHHHHHH
Q 031790 55 KFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA-SKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTF 133 (153)
Q Consensus 55 ~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~i~~~ 133 (153)
.++.++|++|++..-.++. .+ -.+.+..++..+ ...+.+...-..+|++. .+|..+ .+...|.++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~-----~~-i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l------~dS~~I~~y 66 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEE-----KG-IPYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVL------TDSAAIIEY 66 (75)
T ss_dssp EEEETTSHHHHHHHHHHHH-----HT-EEEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEE------ESHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHH-----cC-CeEEEeccCcccchhHHHhhcccccceEEE--ECCEEE------eCHHHHHHH
Confidence 3678999999988744333 32 125556666544 35566666777899996 567644 256788888
Q ss_pred HHHHHH
Q 031790 134 VLEEAE 139 (153)
Q Consensus 134 l~~~~~ 139 (153)
|++.-.
T Consensus 67 L~~~~~ 72 (75)
T PF13417_consen 67 LEERYP 72 (75)
T ss_dssp HHHHST
T ss_pred HHHHcC
Confidence 876543
No 257
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=88.77 E-value=0.54 Score=32.04 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=28.0
Q ss_pred hhhhhhCCCCccceEEEEeCCeeeeeecCCCCHHHHHHHH
Q 031790 95 KTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFV 134 (153)
Q Consensus 95 ~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~i~~~l 134 (153)
...+.+.||.++|++++ +|+. ...|..+.+.+.+.|
T Consensus 165 ~~~a~~~gv~G~Pt~vv--~g~~--~~~G~~~~~~~~~~i 200 (201)
T cd03024 165 EARARQLGISGVPFFVF--NGKY--AVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHCCCCcCCEEEE--CCeE--eecCCCCHHHHHHHh
Confidence 45567889999999988 5542 368999998888766
No 258
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=88.60 E-value=4.4 Score=25.48 Aligned_cols=87 Identities=17% Similarity=0.158 Sum_probs=54.4
Q ss_pred CCccEEEEEE-cCCChHHHhHHHHHHHHHHHhcCCCCeEEEEe-eCCCch-----------hhhhhCCC--CccceEEEE
Q 031790 48 KDTAWFVKFC-VPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEV-DCGASK-----------TLCSKVDI--HSYPTFKVF 112 (153)
Q Consensus 48 ~~~~vlv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v-d~~~~~-----------~~~~~~~v--~~~Pt~~~~ 112 (153)
.+++ +|.|. ++.-+.-+.....+.+....+.+. ++.++.+ +-.... .+.+.|++ .++-.+++-
T Consensus 9 ~~R~-lvv~aps~~d~~~~~q~~~L~~~~~~l~eR-di~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiG 86 (118)
T PF13778_consen 9 KNRL-LVVFAPSADDPRYQQQLEELQNNRCGLDER-DIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIG 86 (118)
T ss_pred cCce-EEEECCCCCCHHHHHHHHHHHhhhhccccC-ceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEe
Confidence 3455 44443 335555566666666655555543 4666555 222222 56677874 455566666
Q ss_pred eCCeeeeeecCCCCHHHHHHHHHH
Q 031790 113 YDGKEVAKYQGPRDVESLKTFVLE 136 (153)
Q Consensus 113 ~~g~~~~~~~g~~~~~~i~~~l~~ 136 (153)
++|....++....+.++|-..|+.
T Consensus 87 KDG~vK~r~~~p~~~~~lf~~ID~ 110 (118)
T PF13778_consen 87 KDGGVKLRWPEPIDPEELFDTIDA 110 (118)
T ss_pred CCCcEEEecCCCCCHHHHHHHHhC
Confidence 899888888999999999888853
No 259
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=87.03 E-value=1.3 Score=24.72 Aligned_cols=51 Identities=20% Similarity=0.255 Sum_probs=31.7
Q ss_pred EEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC----chhhhhhCCCCccceEE
Q 031790 54 VKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA----SKTLCSKVDIHSYPTFK 110 (153)
Q Consensus 54 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~ 110 (153)
..|+.++|+.|++..-.++...- .+....+|..+ .+++.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi------~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGL------ELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCC------CCEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 35789999999877755544321 24455565432 24455555566899995
No 260
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=86.22 E-value=3.8 Score=26.07 Aligned_cols=57 Identities=18% Similarity=0.134 Sum_probs=35.3
Q ss_pred CCeEEEEeeCCCchhh----------hhhCCCCccceEEEEeCCeeeeeecCCCCHHHHHHHHHHHHHhH
Q 031790 82 DEIEVGEVDCGASKTL----------CSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFVLEEAEKA 141 (153)
Q Consensus 82 ~~~~~~~vd~~~~~~~----------~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~i~~~l~~~~~~~ 141 (153)
.++.+.+.|...+|.. .++-|...+|-+++ +|+.+ ..-.+.+-+++.+|+.-.....
T Consensus 39 ~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV--dGeiv-~~G~YPt~eEl~~~~~i~~~~~ 105 (123)
T PF06953_consen 39 QGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV--DGEIV-KTGRYPTNEELAEWLGISFSEL 105 (123)
T ss_dssp TT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--TTEEE-EESS---HHHHHHHHT--GGGT
T ss_pred CCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--CCEEE-EecCCCCHHHHHHHhCCCcccc
Confidence 4799999999876542 34568899999887 88766 4445668899999986655543
No 261
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=85.71 E-value=1.5 Score=30.31 Aligned_cols=42 Identities=26% Similarity=0.258 Sum_probs=32.6
Q ss_pred chhhhhhCCCCccceEEEEeCCeeeeeecCCCCHHHHHHHHHH
Q 031790 94 SKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFVLE 136 (153)
Q Consensus 94 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~i~~~l~~ 136 (153)
+|.+.++|+|+.+|++++.. +..+++..|..+...-.+.+.+
T Consensus 151 DP~lF~~F~I~~VPafVv~C-~~~yD~I~GNIsl~~ALe~iA~ 192 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVFC-SQGYDIIRGNLRVGQALEKVAA 192 (212)
T ss_pred CHHHHHhcCCccccEEEEEc-CCCCCEEEecccHHHHHHHHHh
Confidence 48889999999999999974 4456778898887666555544
No 262
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=85.40 E-value=1.1 Score=30.26 Aligned_cols=34 Identities=24% Similarity=0.409 Sum_probs=25.2
Q ss_pred hhhhhCCCCccceEEEEeCCeeeeeecCCCCHHHHHHHH
Q 031790 96 TLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFV 134 (153)
Q Consensus 96 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~i~~~l 134 (153)
..+.++||.++|++++ +|+ .+.|....+.+...|
T Consensus 158 ~~a~~~gi~gvPtfvv--~g~---~~~G~~~l~~~~~~l 191 (192)
T cd03022 158 EEAIARGVFGVPTFVV--DGE---MFWGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHcCCCcCCeEEE--CCe---eecccccHHHHHHHh
Confidence 4466789999999988 675 456887777666554
No 263
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=85.07 E-value=4.1 Score=28.91 Aligned_cols=58 Identities=17% Similarity=0.090 Sum_probs=42.3
Q ss_pred ceEEeCcccHHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcC--CCCeEEEEeeC
Q 031790 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEG--DDEIEVGEVDC 91 (153)
Q Consensus 32 ~~~~l~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~~~vd~ 91 (153)
+.+.+...+..... .+.+++|-+-..+|..|......++.+..++.. ..++.|..||-
T Consensus 11 p~W~i~~~~pm~~~--~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~ 70 (238)
T PF04592_consen 11 PPWKIGGQDPMLNS--LGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNH 70 (238)
T ss_pred CCceECCchHhhhc--CCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcC
Confidence 44555544433322 467788888899999999988999999877654 45799999984
No 264
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=84.89 E-value=2.6 Score=24.79 Aligned_cols=53 Identities=9% Similarity=0.127 Sum_probs=33.0
Q ss_pred EEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCc-hhhhhhCCCCccceEEE
Q 031790 53 FVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGAS-KTLCSKVDIHSYPTFKV 111 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~v~~~Pt~~~ 111 (153)
+..|+.+.|++|++..-.++.. + -.+.+..+|.... .++.+......+|++..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~-----g-l~~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAK-----N-IPHEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHc-----C-CCCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 5667788999999877554443 2 1355556665432 33555555678899864
No 265
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=84.78 E-value=1.8 Score=29.21 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=24.5
Q ss_pred EEEEEcCCChHHHhHHHHHHHHHHHhc
Q 031790 53 FVKFCVPWCKHCKNLGSLWEDLGKAME 79 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~~~~~~~ 79 (153)
+.+|+.+.||+|-...+.++++.+.++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 668899999999999999999999884
No 266
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=84.31 E-value=7.9 Score=27.56 Aligned_cols=82 Identities=11% Similarity=0.123 Sum_probs=51.5
Q ss_pred ccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCC--C----------------chhhhhhCCCCccceEEE
Q 031790 50 TAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCG--A----------------SKTLCSKVDIHSYPTFKV 111 (153)
Q Consensus 50 ~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~--~----------------~~~~~~~~~v~~~Pt~~~ 111 (153)
..|+=.|++..|..|-.....+.+++.+ .++.-....+| + .....+.++-++++|--.
T Consensus 42 ~~VVELfTSQGCsSCPPAd~~l~k~a~~----~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQa 117 (261)
T COG5429 42 LGVVELFTSQGCSSCPPADANLAKLADD----PGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQA 117 (261)
T ss_pred ceEEEEeecCCcCCCChHHHHHHHhccC----CCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchh
Confidence 4567788899999998888777666553 23444333333 1 123455677777776666
Q ss_pred EeCCeeeeeecCCCCHHHHHHHHHHHH
Q 031790 112 FYDGKEVAKYQGPRDVESLKTFVLEEA 138 (153)
Q Consensus 112 ~~~g~~~~~~~g~~~~~~i~~~l~~~~ 138 (153)
+-+|... ..|. +..+|.+.|...-
T Consensus 118 vvnGr~~--~~Ga-d~~~i~~~i~a~~ 141 (261)
T COG5429 118 VVNGRVH--ANGA-DPGAIEDAIAAMA 141 (261)
T ss_pred eeechhh--hcCC-CHHHHHHHHHHhh
Confidence 6577533 2344 7788888885554
No 267
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=83.59 E-value=17 Score=27.55 Aligned_cols=114 Identities=14% Similarity=0.176 Sum_probs=71.2
Q ss_pred cCCCceEEeCcccHHHHhcc-CCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhh----hhCC
Q 031790 28 HSKSEVITLTPDTFTDKVKE-KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLC----SKVD 102 (153)
Q Consensus 28 ~~~~~~~~l~~~~~~~~~~~-~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~ 102 (153)
.....++.++.+++.+.=.+ -++..+|-|-...-+.-.++...++++++....+.++.++.||-++-|-+. +.|+
T Consensus 246 h~rptlrkl~~~~m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE~tF~ 325 (383)
T PF01216_consen 246 HKRPTLRKLRPEDMFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWEKTFG 325 (383)
T ss_dssp T-S-SEEE--GGGHHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHHHHHT
T ss_pred hchhHhhhCChhhhhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHHhhcC
Confidence 34556788888776555433 356668888888889999999999999999887678999999988876554 3456
Q ss_pred CC-ccceEEEEe--CCeeeeee-c---CCCCHHHHHHHHHHHHHhH
Q 031790 103 IH-SYPTFKVFY--DGKEVAKY-Q---GPRDVESLKTFVLEEAEKA 141 (153)
Q Consensus 103 v~-~~Pt~~~~~--~g~~~~~~-~---g~~~~~~i~~~l~~~~~~~ 141 (153)
|. .-|.+-+++ +...++.- . ...+.+++..||++.+...
T Consensus 326 Idl~~PqIGvVnvtdadsvW~dm~d~~d~pt~~~LedWieDVlsg~ 371 (383)
T PF01216_consen 326 IDLSRPQIGVVNVTDADSVWMDMDDDDDLPTAEELEDWIEDVLSGK 371 (383)
T ss_dssp T-TTS-EEEEEETTTSEEEEC-STTTSS---HHHHHHHHHHHHCTC
T ss_pred ccccCCceeEEeccccccchhccCCcccCCcHHHHHHHHHHHhcCC
Confidence 54 359998886 34444322 2 2357899999999998543
No 268
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=82.47 E-value=8.2 Score=23.94 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=35.8
Q ss_pred CCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031790 48 KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA 93 (153)
Q Consensus 48 ~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~ 93 (153)
++++++|.=.|..|+.-. ....++++.+++.. .++.+...-|+.
T Consensus 20 ~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~-~gl~ILaFPcnq 63 (108)
T PF00255_consen 20 KGKVLLIVNVASKCGYTK-QYKQLNELYEKYKD-KGLEILAFPCNQ 63 (108)
T ss_dssp TTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGG-GTEEEEEEEBST
T ss_pred CCCEEEEEecccccCCcc-ccHHHHHHHHHHhc-CCeEEEeeehHH
Confidence 467778888899999988 66788999999984 479998888864
No 269
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=81.95 E-value=2.3 Score=26.51 Aligned_cols=33 Identities=21% Similarity=0.181 Sum_probs=21.9
Q ss_pred EEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031790 53 FVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA 93 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~ 93 (153)
+..|+.|.|+.|++....+++- ++.|-.+|.-+
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~--------gi~~~~~d~~~ 34 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA--------GHEVEVRDLLT 34 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc--------CCCcEEeehhc
Confidence 4578899999999877555433 35555555543
No 270
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=80.87 E-value=4.3 Score=24.97 Aligned_cols=57 Identities=12% Similarity=0.197 Sum_probs=35.2
Q ss_pred EEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCC--ccceEEE-EeCCe
Q 031790 56 FCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIH--SYPTFKV-FYDGK 116 (153)
Q Consensus 56 f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~--~~Pt~~~-~~~g~ 116 (153)
||..+|+-|......+... .....+.|+.+.-..+..+.+.+++. ...+.+. .++|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~----d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRR----DRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhc----CCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 7999999999888766665 22235777766433444445556654 3444444 45776
No 271
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=80.47 E-value=3.1 Score=22.71 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=15.5
Q ss_pred CccccchhhhHHHHHHHHHHHHH
Q 031790 1 MRNHSNSSFALNLTSLVLLLSLS 23 (153)
Q Consensus 1 m~~~~~~~~~~~l~~l~~~~~~~ 23 (153)
||++++..+.+.++.+-++++++
T Consensus 1 ~r~k~~~~mtriVLLISfiIlfg 23 (59)
T PF11119_consen 1 MRRKKNSRMTRIVLLISFIILFG 23 (59)
T ss_pred CCCcccchHHHHHHHHHHHHHHH
Confidence 78888887777776655555444
No 272
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=77.78 E-value=16 Score=23.54 Aligned_cols=107 Identities=15% Similarity=0.099 Sum_probs=53.2
Q ss_pred ceEEe-CcccHHHHhccCCccEEEEEEcCCChHH-HhHHHHHHHHHHHhcCCCCeEEEEeeCCCc-hhhhhhCC---CCc
Q 031790 32 EVITL-TPDTFTDKVKEKDTAWFVKFCVPWCKHC-KNLGSLWEDLGKAMEGDDEIEVGEVDCGAS-KTLCSKVD---IHS 105 (153)
Q Consensus 32 ~~~~l-~~~~~~~~~~~~~~~vlv~f~~~~C~~C-~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~---v~~ 105 (153)
...++ +.++.++.+.+.++..+|..-| -|+=- -..+|........-+.-+++.=+-...|+. ..-++.|= ..+
T Consensus 17 Gf~eL~T~e~Vd~~~~~~~GTtlVvVNS-VCGCAag~ARPa~~~al~~~kkPD~lvTVFAGqDkEAt~~aR~yf~~~pPS 95 (136)
T PF06491_consen 17 GFEELTTAEEVDEALKNKEGTTLVVVNS-VCGCAAGNARPAAAMALQNDKKPDHLVTVFAGQDKEATAKAREYFEPYPPS 95 (136)
T ss_dssp T-EE--SHHHHHHHHHH--SEEEEEEE--SSHHHHHTHHHHHHHHHHHSS--SEEEEEETTTSHHHHHHHHHTSTTS---
T ss_pred CccccCCHHHHHHHHhCCCCcEEEEEec-cccccccccCHHHHHHHhCCCCCCceEEeccCCCHHHHHHHHHhcCCCCCC
Confidence 34444 5677888887566665666544 66522 245565554444311111222222222221 22334442 346
Q ss_pred cceEEEEeCCeeeeeec----CCCCHHHHHHHHHHHHH
Q 031790 106 YPTFKVFYDGKEVAKYQ----GPRDVESLKTFVLEEAE 139 (153)
Q Consensus 106 ~Pt~~~~~~g~~~~~~~----g~~~~~~i~~~l~~~~~ 139 (153)
-|++.+|++|+.+.... ...+.+.|.+-|....+
T Consensus 96 SPS~ALfKdGelvh~ieRh~IEGr~a~~Ia~~L~~af~ 133 (136)
T PF06491_consen 96 SPSIALFKDGELVHFIERHHIEGRPAEEIAENLQDAFD 133 (136)
T ss_dssp SSEEEEEETTEEEEEE-GGGTTTS-HHHHHHHHHHHHH
T ss_pred CchheeeeCCEEEEEeehhhcCCCCHHHHHHHHHHHHH
Confidence 78999999999875442 23477888877766654
No 273
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=77.66 E-value=3.4 Score=27.83 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=17.8
Q ss_pred hhhhhhCCCCccceEEEEeCCe
Q 031790 95 KTLCSKVDIHSYPTFKVFYDGK 116 (153)
Q Consensus 95 ~~~~~~~~v~~~Pt~~~~~~g~ 116 (153)
...+.+++|.++|++++..++.
T Consensus 159 ~~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 159 QKLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHHcCCCccCEEEEEeCCe
Confidence 3456788999999999997665
No 274
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=77.59 E-value=8.7 Score=28.86 Aligned_cols=83 Identities=18% Similarity=0.257 Sum_probs=53.5
Q ss_pred CChHHHhHHHHH----HHHHHHhcC-CCCeEEEEeeCCC-chhhh--hhCCCCc--cceEEEEeCCeeeeeecCCCCHHH
Q 031790 60 WCKHCKNLGSLW----EDLGKAMEG-DDEIEVGEVDCGA-SKTLC--SKVDIHS--YPTFKVFYDGKEVAKYQGPRDVES 129 (153)
Q Consensus 60 ~C~~C~~~~~~~----~~~~~~~~~-~~~~~~~~vd~~~-~~~~~--~~~~v~~--~Pt~~~~~~g~~~~~~~g~~~~~~ 129 (153)
.||.|-+..-.+ .++.+.+.. ...+.+..+.|-- .|.=+ ..+++.+ -|.-.+|.+|+.+.+..+..=.++
T Consensus 263 aCP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~~~~~~~~~ee 342 (361)
T COG0821 263 ACPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIKKLPEEDIVEE 342 (361)
T ss_pred ECCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEEecChhhHHHH
Confidence 488886554333 344444433 2357777777642 22222 2456553 689999999999988888877888
Q ss_pred HHHHHHHHHHhHh
Q 031790 130 LKTFVLEEAEKAA 142 (153)
Q Consensus 130 i~~~l~~~~~~~~ 142 (153)
+.+.+++......
T Consensus 343 l~~~i~~~~~~~~ 355 (361)
T COG0821 343 LEALIEAYAEERD 355 (361)
T ss_pred HHHHHHHHHHHhh
Confidence 8888877766554
No 275
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=76.57 E-value=9 Score=22.96 Aligned_cols=60 Identities=12% Similarity=0.033 Sum_probs=33.8
Q ss_pred EEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhh--------CCCCccceEEEEeCCeee
Q 031790 56 FCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSK--------VDIHSYPTFKVFYDGKEV 118 (153)
Q Consensus 56 f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~--------~~v~~~Pt~~~~~~g~~~ 118 (153)
+|.+.+.-.++....-+.+...+.. .++.|-.+|++.+++.-+. .+-..+|.+++ +++.+
T Consensus 4 vY~ts~~g~~~~k~~~~~v~~lL~~-k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi--~~~~i 71 (92)
T cd03030 4 VYIASSSGSTEIKKRQQEVLGFLEA-KKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFN--GDEYC 71 (92)
T ss_pred EEEecccccHHHHHHHHHHHHHHHH-CCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEE--CCEEe
Confidence 3444444455555554555544443 4689999999876544322 13356777764 56444
No 276
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=76.17 E-value=21 Score=24.05 Aligned_cols=44 Identities=9% Similarity=0.176 Sum_probs=33.4
Q ss_pred CCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031790 48 KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCG 92 (153)
Q Consensus 48 ~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~ 92 (153)
.+++++|.=-|+.|+.-..-...+..+.++++. .++.+...-|+
T Consensus 33 rGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~-~Gl~ILaFPCN 76 (171)
T KOG1651|consen 33 RGKVVLIVNVASQCGLTESQYTELNELYEKYKD-QGLEILAFPCN 76 (171)
T ss_pred CCeEEEEEEcccccccchhcchhHHHHHHHHhh-CCeEEEEeccc
Confidence 467777777899999888666688888888864 46777777665
No 277
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=76.17 E-value=14 Score=25.92 Aligned_cols=70 Identities=21% Similarity=0.251 Sum_probs=43.7
Q ss_pred CChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhC-CCCccceEEEEeCCeeeeeecCCCCHHHHHHHHHHHH
Q 031790 60 WCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKV-DIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFVLEEA 138 (153)
Q Consensus 60 ~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~-~v~~~Pt~~~~~~g~~~~~~~g~~~~~~i~~~l~~~~ 138 (153)
.|+.|+++.-.+. . ++ ..+.+-.||...-++..... .-...|.+.+ +|+ +..+.+.|.++|++.+
T Consensus 20 dcpf~qr~~m~L~---~--k~-~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~--d~~------~~tDs~~Ie~~Lee~l 85 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---L--KG-VPFKVTTVDLSRKPEWFLDISPGGKPPVLKF--DEK------WVTDSDKIEEFLEEKL 85 (221)
T ss_pred CChhHHHHHHHHH---H--cC-CCceEEEeecCCCcHHHHhhCCCCCCCeEEe--CCc------eeccHHHHHHHHHHhc
Confidence 6888887766555 2 21 14888899988776655443 3444555433 332 2346788888888887
Q ss_pred HhHhh
Q 031790 139 EKAAT 143 (153)
Q Consensus 139 ~~~~~ 143 (153)
.+...
T Consensus 86 ~~p~~ 90 (221)
T KOG1422|consen 86 PPPKL 90 (221)
T ss_pred CCCCC
Confidence 76543
No 278
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=76.15 E-value=4.3 Score=25.56 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=17.8
Q ss_pred EEEEEcCCChHHHhHHHHHHHH
Q 031790 53 FVKFCVPWCKHCKNLGSLWEDL 74 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~~ 74 (153)
+..|+.|.|..|+.....+++-
T Consensus 3 itiy~~p~C~t~rka~~~L~~~ 24 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEH 24 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 5678999999999988766554
No 279
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=76.12 E-value=7.7 Score=29.17 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=46.0
Q ss_pred eEEEEeeCCCchhhhhhCCCCccceEEEEe--CCeeeeeecCCCCHHHHHHHHHHHHHhHh
Q 031790 84 IEVGEVDCGASKTLCSKVDIHSYPTFKVFY--DGKEVAKYQGPRDVESLKTFVLEEAEKAA 142 (153)
Q Consensus 84 ~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~--~g~~~~~~~g~~~~~~i~~~l~~~~~~~~ 142 (153)
-..+..|..+...+..-|++..+|.+.+++ .|+.+.+-.|...+++|.+-+.+.+...+
T Consensus 133 wllV~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi~~~~ 193 (356)
T KOG1364|consen 133 WLLVLDDTSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFIDSCP 193 (356)
T ss_pred EEEEeeccCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHHhcCC
Confidence 444555666777888899999999998886 68888888888888888888887776443
No 280
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=76.09 E-value=5.6 Score=30.07 Aligned_cols=78 Identities=14% Similarity=0.221 Sum_probs=43.5
Q ss_pred CChHHHhHHHHH----HHHHHHhcC-CCCeEEEEeeCCCc-hhhhh--hCCCC-ccc-eEEEEeCCeeeeee-cCCCCHH
Q 031790 60 WCKHCKNLGSLW----EDLGKAMEG-DDEIEVGEVDCGAS-KTLCS--KVDIH-SYP-TFKVFYDGKEVAKY-QGPRDVE 128 (153)
Q Consensus 60 ~C~~C~~~~~~~----~~~~~~~~~-~~~~~~~~vd~~~~-~~~~~--~~~v~-~~P-t~~~~~~g~~~~~~-~g~~~~~ 128 (153)
.||.|-+..-.+ +++.+.... ..+++++-+.|-=| |.=++ .+++. +-| ...+|++|+.+.+. ....-.+
T Consensus 270 SCPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v~k~~~ee~~vd 349 (359)
T PF04551_consen 270 SCPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVVKKVIPEEEIVD 349 (359)
T ss_dssp E----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEEEEE-CSTCHHH
T ss_pred eCCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEEEEecCCHHHHHH
Confidence 377775544333 444444444 23799999998633 33332 45665 434 47888999999887 6665567
Q ss_pred HHHHHHHHH
Q 031790 129 SLKTFVLEE 137 (153)
Q Consensus 129 ~i~~~l~~~ 137 (153)
.+.+.|+++
T Consensus 350 ~L~~~I~~~ 358 (359)
T PF04551_consen 350 ELIELIEEH 358 (359)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 777777654
No 281
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=75.27 E-value=28 Score=25.06 Aligned_cols=73 Identities=15% Similarity=0.097 Sum_probs=38.4
Q ss_pred ceEEeCcccHHHHhccCCccEEEEEEcCC-ChH-HHhHHHHHHHHHHHhcC-CC-CeEEEEeeCCCchhhhhh----CCC
Q 031790 32 EVITLTPDTFTDKVKEKDTAWFVKFCVPW-CKH-CKNLGSLWEDLGKAMEG-DD-EIEVGEVDCGASKTLCSK----VDI 103 (153)
Q Consensus 32 ~~~~l~~~~~~~~~~~~~~~vlv~f~~~~-C~~-C~~~~~~~~~~~~~~~~-~~-~~~~~~vd~~~~~~~~~~----~~v 103 (153)
....+++.+-. .+++=+++|-|.+|.+. =+. -....+.+.++.+.|+. +. ++.+-.+|.+.++..+++ +|+
T Consensus 8 k~ysLS~~T~~-~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi 86 (271)
T PF09822_consen 8 KRYSLSDQTKK-VLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGI 86 (271)
T ss_pred CCccCCHHHHH-HHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCC
Confidence 34445443322 22223445555554443 222 23344444555444443 22 699999999777766655 777
Q ss_pred Cc
Q 031790 104 HS 105 (153)
Q Consensus 104 ~~ 105 (153)
..
T Consensus 87 ~~ 88 (271)
T PF09822_consen 87 QP 88 (271)
T ss_pred Cc
Confidence 76
No 282
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=73.90 E-value=31 Score=26.25 Aligned_cols=77 Identities=18% Similarity=0.292 Sum_probs=44.4
Q ss_pred CCChHHH-hHHHHHHHHHHHhcC-CCCeEEEEeeCC-Cchhhh--hhCCCCcc-ceEEEEeCCeeeeeecCCCCHHHHHH
Q 031790 59 PWCKHCK-NLGSLWEDLGKAMEG-DDEIEVGEVDCG-ASKTLC--SKVDIHSY-PTFKVFYDGKEVAKYQGPRDVESLKT 132 (153)
Q Consensus 59 ~~C~~C~-~~~~~~~~~~~~~~~-~~~~~~~~vd~~-~~~~~~--~~~~v~~~-Pt~~~~~~g~~~~~~~g~~~~~~i~~ 132 (153)
|.|+.|+ .......++.+.+.+ ...++++...|- ..+.-+ ..+|+.+- +...+|.+|+.+.+..+..=.+++.+
T Consensus 272 PgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~kv~~~~~~~~l~~ 351 (360)
T PRK00366 272 PTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIKTLPEENIVEELEA 351 (360)
T ss_pred CCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEeeeeChHhHHHHHHH
Confidence 3344442 333444555566655 335888888884 433322 35666654 45778899998877665533444444
Q ss_pred HHH
Q 031790 133 FVL 135 (153)
Q Consensus 133 ~l~ 135 (153)
.++
T Consensus 352 ~i~ 354 (360)
T PRK00366 352 EIE 354 (360)
T ss_pred HHH
Confidence 443
No 283
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=73.71 E-value=35 Score=25.49 Aligned_cols=96 Identities=19% Similarity=0.295 Sum_probs=52.3
Q ss_pred CCceEEeCcccHH-HHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhC-CCCccc
Q 031790 30 KSEVITLTPDTFT-DKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKV-DIHSYP 107 (153)
Q Consensus 30 ~~~~~~l~~~~~~-~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~-~v~~~P 107 (153)
..-++.++.++.+ ..+..+++|.+|+|.+..- |.++...+.... .+.+.+.- +...+++..+ .....|
T Consensus 133 ~aiI~pi~enQ~~fehlq~Rhq~ffVf~Gtge~-------PL~d~fidAASe--~~~~a~Ff-SaseeVaPe~~~~kemp 202 (468)
T KOG4277|consen 133 AAIIEPINENQIEFEHLQARHQPFFVFFGTGEG-------PLFDAFIDAASE--KFSVARFF-SASEEVAPEENDAKEMP 202 (468)
T ss_pred cceeeecChhHHHHHHHhhccCceEEEEeCCCC-------cHHHHHHHHhhh--heeeeeee-ccccccCCcccchhhcc
Confidence 3446666664443 3445578898888876543 333333332222 34444333 2223444333 456789
Q ss_pred eEEEEeCCeeeeeecCCCCHHHHHHHHHHH
Q 031790 108 TFKVFYDGKEVAKYQGPRDVESLKTFVLEE 137 (153)
Q Consensus 108 t~~~~~~g~~~~~~~g~~~~~~i~~~l~~~ 137 (153)
.+.+|++...-....| +.+.+-+|+.+.
T Consensus 203 aV~VFKDetf~i~de~--dd~dLseWinRE 230 (468)
T KOG4277|consen 203 AVAVFKDETFEIEDEG--DDEDLSEWINRE 230 (468)
T ss_pred ceEEEccceeEEEecC--chhHHHHHHhHh
Confidence 9999988754433333 456777777553
No 284
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=73.42 E-value=28 Score=24.23 Aligned_cols=81 Identities=14% Similarity=0.233 Sum_probs=49.6
Q ss_pred EEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC--c----------------hhhhhhCCC--CccceEEE
Q 031790 52 WFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA--S----------------KTLCSKVDI--HSYPTFKV 111 (153)
Q Consensus 52 vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~--~----------------~~~~~~~~v--~~~Pt~~~ 111 (153)
++=.|+|..|..|-.....+.+++..- ++......+|- . ...++.++. -.+|.+++
T Consensus 1 vVELFTSQGCsSCPpAD~~L~~l~~~~----~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV 76 (202)
T PF06764_consen 1 VVELFTSQGCSSCPPADRLLSELAARP----DVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV 76 (202)
T ss_dssp EEEEEE-TT-TT-HHHHHHHHHHHHHT----SSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE
T ss_pred CeeEecCCCCCCCcHHHHHHHHhhcCC----CEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE
Confidence 355789999999999999999998882 46666666542 1 122334444 35788877
Q ss_pred EeCCeeeeeecCCCCHHHHHHHHHHHHHhH
Q 031790 112 FYDGKEVAKYQGPRDVESLKTFVLEEAEKA 141 (153)
Q Consensus 112 ~~~g~~~~~~~g~~~~~~i~~~l~~~~~~~ 141 (153)
||... ..|. +...+...|.+.....
T Consensus 77 --nG~~~--~~g~-~~~~~~~ai~~~~~~~ 101 (202)
T PF06764_consen 77 --NGREH--RVGS-DRAAVEAAIQAARARP 101 (202)
T ss_dssp --TTTEE--EETT--HHHHHHHHHHHHHTT
T ss_pred --CCeee--eecc-CHHHHHHHHHHhhccC
Confidence 77533 3444 7788888888877653
No 285
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=72.88 E-value=7.8 Score=21.27 Aligned_cols=51 Identities=20% Similarity=0.212 Sum_probs=30.0
Q ss_pred EEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC----chhhhhhCCCCccceEEE
Q 031790 55 KFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA----SKTLCSKVDIHSYPTFKV 111 (153)
Q Consensus 55 ~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~~ 111 (153)
.|+.+.|+.|++..-.++...- .+....+|... .+.+.+...-..+|++..
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~~~------~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLALLGI------PYEWVEVDILKGETRTPEFLALNPNGEVPVLEL 57 (73)
T ss_pred EEeCCCCccHHHHHHHHHHcCC------CcEEEEecCCCcccCCHHHHHhCCCCCCCEEEE
Confidence 5778999999887755444321 24445555432 233333344567899864
No 286
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=71.76 E-value=5.2 Score=24.81 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=22.4
Q ss_pred EEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCc
Q 031790 54 VKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGAS 94 (153)
Q Consensus 54 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~ 94 (153)
..|+.+.|..|++....+++. ++.|..+|.-+.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~--------~i~~~~~di~~~ 34 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA--------GIEPEIVEYLKT 34 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC--------CCCeEEEecccC
Confidence 468899999999977555443 355566666443
No 287
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=71.25 E-value=5.3 Score=24.85 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=23.0
Q ss_pred EEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCc
Q 031790 54 VKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGAS 94 (153)
Q Consensus 54 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~ 94 (153)
..|+.+.|..|++....+++. ++.+..+|..++
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~--------~i~~~~~di~~~ 34 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK--------GIEPEVVKYLKN 34 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC--------CCCeEEEeccCC
Confidence 468899999999988665542 355566666543
No 288
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=70.05 E-value=9.1 Score=22.23 Aligned_cols=34 Identities=21% Similarity=0.411 Sum_probs=21.0
Q ss_pred ccceEEEEe-CCeeeeee-cCCCCHHHHHHHHHHHH
Q 031790 105 SYPTFKVFY-DGKEVAKY-QGPRDVESLKTFVLEEA 138 (153)
Q Consensus 105 ~~Pt~~~~~-~g~~~~~~-~g~~~~~~i~~~l~~~~ 138 (153)
.-|++.+++ +|+.+.+. ....+.+++.+|+.+..
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~kg 76 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEKWKTDEIEEFLNEKG 76 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHhC
Confidence 458899987 77755444 46679999999997653
No 289
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=67.03 E-value=20 Score=20.07 Aligned_cols=56 Identities=9% Similarity=-0.029 Sum_probs=33.1
Q ss_pred EEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC----chhhhhhCCCCccceEEEEeCCee
Q 031790 54 VKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA----SKTLCSKVDIHSYPTFKVFYDGKE 117 (153)
Q Consensus 54 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~g~~ 117 (153)
..|+.+.|+.|++..-.+++..- .+.+..+|... .+++.+-..-..+|++. .+|..
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl------~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g~~ 61 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGL------RCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGDNI 61 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCC------CCEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECCEE
Confidence 45788899999777643333311 35556666532 23344445556889985 46643
No 290
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=65.01 E-value=26 Score=20.52 Aligned_cols=32 Identities=25% Similarity=0.273 Sum_probs=24.7
Q ss_pred cceEEEEeCCeeeeeecCCCCHHHHHHHHHHHHH
Q 031790 106 YPTFKVFYDGKEVAKYQGPRDVESLKTFVLEEAE 139 (153)
Q Consensus 106 ~Pt~~~~~~g~~~~~~~g~~~~~~i~~~l~~~~~ 139 (153)
-.++.+|..|+.+ ..|..+.+++.+.+++...
T Consensus 49 ~~t~~IF~sGki~--itGaks~~~~~~a~~~i~~ 80 (86)
T PF00352_consen 49 KATVLIFSSGKIV--ITGAKSEEEAKKAIEKILP 80 (86)
T ss_dssp TEEEEEETTSEEE--EEEESSHHHHHHHHHHHHH
T ss_pred cEEEEEEcCCEEE--EEecCCHHHHHHHHHHHHH
Confidence 3578888999865 5788888888888876654
No 291
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=64.73 E-value=47 Score=23.44 Aligned_cols=74 Identities=20% Similarity=0.304 Sum_probs=45.7
Q ss_pred EEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEeCCeeeeeecCCCCHHHHHH
Q 031790 53 FVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKT 132 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~i~~ 132 (153)
+=.|.-..|..|-.+-..+++- .... ++.| +|....+..+-+-+|-++|++++ +|+.+ +-+..++++|..
T Consensus 13 VkI~~HktC~ssy~Lf~~L~nk-gll~---~Vki--i~a~~p~f~~~~~~V~SvP~Vf~--DGel~--~~dpVdp~~ies 82 (265)
T COG5494 13 VKIFTHKTCVSSYMLFEYLENK-GLLG---KVKI--IDAELPPFLAFEKGVISVPSVFI--DGELV--YADPVDPEEIES 82 (265)
T ss_pred EEEEEecchHHHHHHHHHHHhc-CCCC---CceE--EEcCCChHHHhhcceeecceEEE--cCeEE--EcCCCCHHHHHH
Confidence 3345566888886655443321 0122 3444 35556667777778999999764 88765 456667777777
Q ss_pred HHHH
Q 031790 133 FVLE 136 (153)
Q Consensus 133 ~l~~ 136 (153)
.++.
T Consensus 83 ~~~G 86 (265)
T COG5494 83 ILSG 86 (265)
T ss_pred HHcC
Confidence 7654
No 292
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=62.45 E-value=7.8 Score=31.19 Aligned_cols=98 Identities=12% Similarity=0.216 Sum_probs=59.0
Q ss_pred ccHHHHhccCCccEEEEEEcCCChHHHhHHHH-H--HHHHHHhcCCCCeEEEEeeCCCchhhhh--------hCCCCccc
Q 031790 39 DTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSL-W--EDLGKAMEGDDEIEVGEVDCGASKTLCS--------KVDIHSYP 107 (153)
Q Consensus 39 ~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~-~--~~~~~~~~~~~~~~~~~vd~~~~~~~~~--------~~~v~~~P 107 (153)
+.|++. +..++|+++-..-..|.+|..|... | ++.++.+.+ ++.-++||-++-|++-+ ..+--++|
T Consensus 103 eaf~ka-r~enkpifLsvgystchwchvmekesfeneet~~ilne--nfv~ikVDREERPDVDK~YM~Fv~assg~GGWP 179 (786)
T KOG2244|consen 103 EAFNKA-RAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNE--NFVKIKVDREERPDVDKLYMAFVVASSGGGGWP 179 (786)
T ss_pred HHHHHH-HhcCCCEEEEcccccchheeeeecccccCHHHHHHHhh--hhhhhccChhhcCchHHHHHHHHHhccCCCCCc
Confidence 444444 3468888999988999999988753 3 345555544 56667777777676644 34667888
Q ss_pred eEEEEe-CCeee--------eeecCCCCHHHHHHHHHHHHH
Q 031790 108 TFKVFY-DGKEV--------AKYQGPRDVESLKTFVLEEAE 139 (153)
Q Consensus 108 t~~~~~-~g~~~--------~~~~g~~~~~~i~~~l~~~~~ 139 (153)
.-+++. +-+++ ..-.|......+.+.|....+
T Consensus 180 msV~LTPdL~PlvgGTYFPP~d~~g~~gF~TvL~~I~~~w~ 220 (786)
T KOG2244|consen 180 MSVFLTPDLKPLVGGTYFPPNDNYGRPGFKTVLKKIKDAWN 220 (786)
T ss_pred eeEEeCCCcccccCCcccCCCCCCCCccHHHHHHHHHHHHH
Confidence 766663 32322 111233445555555555444
No 293
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=62.37 E-value=12 Score=23.34 Aligned_cols=74 Identities=18% Similarity=0.353 Sum_probs=43.3
Q ss_pred CChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCch-hhhhhCC--CCccceEEEEeCCeee---eeecCC---CCHHHH
Q 031790 60 WCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASK-TLCSKVD--IHSYPTFKVFYDGKEV---AKYQGP---RDVESL 130 (153)
Q Consensus 60 ~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~--v~~~Pt~~~~~~g~~~---~~~~g~---~~~~~i 130 (153)
.|++|..+...+...-..-. .+.+.+|+..... .+....+ =++.|++++=.+.... ..+.|. .+.+.|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~---~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I 99 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRE---RLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRI 99 (112)
T ss_pred ECCchHHHHhHHhhChhhhh---cccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHH
Confidence 59999988877665544333 4889999987643 3333333 2689998775322111 122222 245666
Q ss_pred HHHHHH
Q 031790 131 KTFVLE 136 (153)
Q Consensus 131 ~~~l~~ 136 (153)
..++.+
T Consensus 100 ~~~La~ 105 (112)
T PF11287_consen 100 LRYLAE 105 (112)
T ss_pred HHHHHH
Confidence 666643
No 294
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=61.98 E-value=85 Score=25.46 Aligned_cols=60 Identities=10% Similarity=-0.022 Sum_probs=32.9
Q ss_pred CCccEEEEEE-cCCCh-HHHhHHHHHHHHHHHhcC-CCCeEEEEeeCCCchhh--------hhhCCCCccc
Q 031790 48 KDTAWFVKFC-VPWCK-HCKNLGSLWEDLGKAMEG-DDEIEVGEVDCGASKTL--------CSKVDIHSYP 107 (153)
Q Consensus 48 ~~~~vlv~f~-~~~C~-~C~~~~~~~~~~~~~~~~-~~~~~~~~vd~~~~~~~--------~~~~~v~~~P 107 (153)
=+++|-|.+| ++.-+ .-......++++-+.|+. ..++.+-.+|-..+++. +.++|+...+
T Consensus 46 L~~pV~I~~~~s~~~~~~~~~~~~~v~~lL~eY~~~s~~i~~~~iDP~~~~~~e~~~~~~~~~~~gi~~~~ 116 (552)
T TIGR03521 46 LDDPVSIDIFLDGELPADFRRLQKETRQLLEEFAAYNPNIKFRFVNPLEEEDEQGEEILDSLAQYGIKPAN 116 (552)
T ss_pred CCCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHHHHHHHHcCCCcce
Confidence 3566655555 44322 223344445555555443 34699999998765432 3347777655
No 295
>PRK10853 putative reductase; Provisional
Probab=61.07 E-value=13 Score=23.43 Aligned_cols=33 Identities=15% Similarity=0.141 Sum_probs=22.5
Q ss_pred EEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031790 53 FVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA 93 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~ 93 (153)
+..|+-+.|..|++....+++- ++.+..+|.-+
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~--------~i~~~~~d~~k 34 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ--------GIDYRFHDYRV 34 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc--------CCCcEEeehcc
Confidence 4568889999999988666543 35555556543
No 296
>COG3411 Ferredoxin [Energy production and conversion]
Probab=60.30 E-value=21 Score=19.88 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=24.8
Q ss_pred cceEEEEeCCeeeeeecCCCCHHHHHHHHHHHHHhHh
Q 031790 106 YPTFKVFYDGKEVAKYQGPRDVESLKTFVLEEAEKAA 142 (153)
Q Consensus 106 ~Pt~~~~~~g~~~~~~~g~~~~~~i~~~l~~~~~~~~ 142 (153)
=|++++|++|- -.+..+.+...++++.++....
T Consensus 17 gPvl~vYpegv----WY~~V~p~~a~rIv~~hl~~Gr 49 (64)
T COG3411 17 GPVLVVYPEGV----WYTRVDPEDARRIVQSHLLGGR 49 (64)
T ss_pred CCEEEEecCCe----eEeccCHHHHHHHHHHHHhCCC
Confidence 38999999992 2345588899999988887544
No 297
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=59.72 E-value=11 Score=25.96 Aligned_cols=38 Identities=18% Similarity=0.228 Sum_probs=23.6
Q ss_pred hhhhCCCCccceEEEEeCCeeeeeecCCCCHHHHHHHH
Q 031790 97 LCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFV 134 (153)
Q Consensus 97 ~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~i~~~l 134 (153)
-+.+.||.++|++++-.++..-..|-|.--.+.+.++|
T Consensus 171 ~A~~~Gv~GVP~fvv~~~~~~~e~fwG~Drl~~~~~~l 208 (209)
T cd03021 171 EALKYGAFGLPWIVVTNDKGKTEMFFGSDRFEQVADFL 208 (209)
T ss_pred HHHHcCCCCCCEEEEEcCCCCccceecCCcHHHHHHHh
Confidence 34567999999998854322223566765555555544
No 298
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=58.74 E-value=55 Score=22.25 Aligned_cols=10 Identities=10% Similarity=0.135 Sum_probs=7.3
Q ss_pred CCccEEEEEE
Q 031790 48 KDTAWFVKFC 57 (153)
Q Consensus 48 ~~~~vlv~f~ 57 (153)
.+++++++||
T Consensus 89 ~nk~vV~f~Y 98 (211)
T KOG0855|consen 89 GNKPVVLFFY 98 (211)
T ss_pred CCCcEEEEEe
Confidence 3558888888
No 299
>COG4752 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.33 E-value=9.1 Score=25.26 Aligned_cols=28 Identities=18% Similarity=0.513 Sum_probs=21.8
Q ss_pred CcccHHHHhccCCccEEEEEEcCCChHH
Q 031790 37 TPDTFTDKVKEKDTAWFVKFCVPWCKHC 64 (153)
Q Consensus 37 ~~~~~~~~~~~~~~~vlv~f~~~~C~~C 64 (153)
+-+.....+.+.++|+++.|.+-|--+-
T Consensus 121 sy~~lr~~I~e~dkp~LilfGTGwGlpd 148 (190)
T COG4752 121 SYSWLRNEIQERDKPWLILFGTGWGLPD 148 (190)
T ss_pred cHHHHHHHHhhcCCcEEEEecCCCCCCH
Confidence 4455667777789999999999997554
No 300
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=56.46 E-value=53 Score=21.38 Aligned_cols=67 Identities=9% Similarity=0.142 Sum_probs=43.6
Q ss_pred CCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCc--cceEEEEeCCeee
Q 031790 48 KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHS--YPTFKVFYDGKEV 118 (153)
Q Consensus 48 ~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~--~Pt~~~~~~g~~~ 118 (153)
-+++-.+.+|.-.|+-|-.....+.+ .+....+.|..+.-+....+.+..+... +=++.+.++|+..
T Consensus 5 ~~~p~~vvlyDG~C~lC~~~vrfLi~----~D~~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~~ 73 (137)
T COG3011 5 MKKPDLVVLYDGVCPLCDGWVRFLIR----RDQGGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQLL 73 (137)
T ss_pred CCCCCEEEEECCcchhHHHHHHHHHH----hccCCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCceE
Confidence 35566788999999999875544332 2323478899888777666666666543 2345555677644
No 301
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=56.36 E-value=21 Score=22.74 Aligned_cols=22 Identities=9% Similarity=0.161 Sum_probs=17.2
Q ss_pred EEEEEcCCChHHHhHHHHHHHH
Q 031790 53 FVKFCVPWCKHCKNLGSLWEDL 74 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~~ 74 (153)
+..|+-+.|..|++....+++-
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~ 24 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKAS 24 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 5567889999999988766543
No 302
>PRK10026 arsenate reductase; Provisional
Probab=55.72 E-value=19 Score=23.45 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=17.2
Q ss_pred EEEEEcCCChHHHhHHHHHHHH
Q 031790 53 FVKFCVPWCKHCKNLGSLWEDL 74 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~~ 74 (153)
+..|+-+.|..|++....+++-
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~ 25 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS 25 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 5578899999999988665543
No 303
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=54.56 E-value=15 Score=22.58 Aligned_cols=31 Identities=23% Similarity=0.373 Sum_probs=19.7
Q ss_pred EEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCc
Q 031790 56 FCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGAS 94 (153)
Q Consensus 56 f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~ 94 (153)
|+.+.|..|+.....+++- ++.+-.+|..+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~--------gi~~~~~d~~k~ 31 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEEN--------GIEYEFIDYKKE 31 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHT--------T--EEEEETTTS
T ss_pred CcCCCCHHHHHHHHHHHHc--------CCCeEeehhhhC
Confidence 5789999999988776642 466677777654
No 304
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=53.79 E-value=45 Score=25.21 Aligned_cols=68 Identities=16% Similarity=0.235 Sum_probs=39.3
Q ss_pred EcCCChHHH-hHHHHHHHHHHHhcC-CCCeEEEEeeCCC-chhhhh--hCCCCcc--ceEEEEeCCeeeeeecCC
Q 031790 57 CVPWCKHCK-NLGSLWEDLGKAMEG-DDEIEVGEVDCGA-SKTLCS--KVDIHSY--PTFKVFYDGKEVAKYQGP 124 (153)
Q Consensus 57 ~~~~C~~C~-~~~~~~~~~~~~~~~-~~~~~~~~vd~~~-~~~~~~--~~~v~~~--Pt~~~~~~g~~~~~~~g~ 124 (153)
.=|.|+.|. .+.+..+++.+.+.. ..+++++.+.|-- .|.=++ .++|.+- -..++|++|+.+.+..+.
T Consensus 261 SCPtCGR~~~dl~~~~~~ve~~l~~~~~~l~VAVMGCvVNGPGEak~ADiGIaggg~g~~~lF~~G~~~~kv~~~ 335 (346)
T TIGR00612 261 ACPSCGRTGFDVEKVVRRVQEALFHLKTPLKVAVMGCVVNGPGEAKHADIGISGGGTGSAILFKRGKPKAKQPET 335 (346)
T ss_pred ECCCCCCcCCCHHHHHHHHHHHHhcCCCCCEEEEECceecCCchhhccCeeeecCCCCceEEEECCEEeEecCHH
Confidence 345555553 344455555555554 3468998888752 233222 4566543 457788999877655443
No 305
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=52.74 E-value=77 Score=23.84 Aligned_cols=97 Identities=15% Similarity=0.176 Sum_probs=56.3
Q ss_pred CceEEeCcccHHHHhccCCccEEEEEEcCCChHHHhHHHHH-HHHHHHhcC-CCCeEEEEeeCCCchhhhhhCC--CCcc
Q 031790 31 SEVITLTPDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLW-EDLGKAMEG-DDEIEVGEVDCGASKTLCSKVD--IHSY 106 (153)
Q Consensus 31 ~~~~~l~~~~~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~-~~~~~~~~~-~~~~~~~~vd~~~~~~~~~~~~--v~~~ 106 (153)
+-++++|-++.++.. +.+.|.+|.|+.+.-.... ..+ ..+++.+.+ ...+.+...|+..-......+| -...
T Consensus 210 pLVREiTFeN~EELt-EEGlPflILf~~kdD~~s~---k~F~~aI~ReL~~e~~~in~l~ADG~~f~hpL~HlgKs~~DL 285 (375)
T KOG0912|consen 210 PLVREITFENAEELT-EEGLPFLILFRKKDDKESE---KIFKNAIARELDDETLAINFLTADGKVFKHPLRHLGKSPDDL 285 (375)
T ss_pred hhhhhhhhccHHHHh-hcCCceEEEEecCCcccHH---HHHHHHHHHHhhhhhhccceeecCcceecchHHHhCCCcccC
Confidence 356777777777766 4688999999988754432 222 334444444 2247788888765444334433 2345
Q ss_pred ceEEE--------EeCCeeeeeecCCCCHHHHHHHHHHH
Q 031790 107 PTFKV--------FYDGKEVAKYQGPRDVESLKTFVLEE 137 (153)
Q Consensus 107 Pt~~~--------~~~g~~~~~~~g~~~~~~i~~~l~~~ 137 (153)
|.+.+ |++++. -..+..+.+|+...
T Consensus 286 PviaIDsF~Hmylfp~f~d------i~~pGkLkqFv~DL 318 (375)
T KOG0912|consen 286 PVIAIDSFRHMYLFPDFND------INIPGKLKQFVADL 318 (375)
T ss_pred cEEEeeccceeeecCchhh------hcCccHHHHHHHHH
Confidence 65544 333322 23455788888665
No 306
>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity. The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.
Probab=52.44 E-value=28 Score=20.94 Aligned_cols=69 Identities=17% Similarity=0.175 Sum_probs=40.5
Q ss_pred CCChHHHhHHHHHHHHHHHhcCC--CCeEEEEeeCCCchhhhhhCCCCccceEEEEe--CCeeeeeecCCCCHHHHHHHH
Q 031790 59 PWCKHCKNLGSLWEDLGKAMEGD--DEIEVGEVDCGASKTLCSKVDIHSYPTFKVFY--DGKEVAKYQGPRDVESLKTFV 134 (153)
Q Consensus 59 ~~C~~C~~~~~~~~~~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~--~g~~~~~~~g~~~~~~i~~~l 134 (153)
.-|..+- .+.++.+.+.+... .++.+....+-. +-..-|++++|+ +| ...|..+++++...+
T Consensus 14 ~~C~~~g--~~l~~~l~~~l~~~~~~~v~v~~~~clG--------~c~~gp~vvvyP~~~g----~wy~~v~p~~v~~Iv 79 (97)
T cd03062 14 KRCGICG--PPLAAELRAELPEHGPGGVRVWEVSHVG--------GHKFAGNVIIYPKGDG----IWYGRVTPEHVPPIV 79 (97)
T ss_pred cChhhcC--HHHHHHHHHHHHHhCCCceEEEeCCcCC--------ccCcCCEEEEEeCCCe----eEEeecCHHHHHHHH
Confidence 3555543 34556666555431 234444443211 113458999999 66 345667889999999
Q ss_pred HHHHHhH
Q 031790 135 LEEAEKA 141 (153)
Q Consensus 135 ~~~~~~~ 141 (153)
++++...
T Consensus 80 ~~hl~~g 86 (97)
T cd03062 80 DRLILGG 86 (97)
T ss_pred HHHhcCC
Confidence 8887653
No 307
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=51.94 E-value=40 Score=18.58 Aligned_cols=69 Identities=10% Similarity=0.146 Sum_probs=39.1
Q ss_pred EEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC----chhhhhhCCCCccceEEEEeCCeeeeeecCCCCHH
Q 031790 53 FVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA----SKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVE 128 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~ 128 (153)
+-.|+.+.|+.|++..-.++...- .+....++... .+.+.+......+|++. .+|..+ ....
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i------~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~--~~g~~l------~es~ 67 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGV------DYELVPVDLTKGEHKSPEHLARNPFGQIPALE--DGDLKL------FESR 67 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCC------CcEEEEeCccccccCCHHHHhhCCCCCCCEEE--ECCEEE------EcHH
Confidence 445667779999887755444321 24455555432 23445555667899874 345322 3456
Q ss_pred HHHHHHH
Q 031790 129 SLKTFVL 135 (153)
Q Consensus 129 ~i~~~l~ 135 (153)
.|.++|.
T Consensus 68 aI~~yL~ 74 (76)
T cd03053 68 AITRYLA 74 (76)
T ss_pred HHHHHHh
Confidence 6666664
No 308
>PF07351 DUF1480: Protein of unknown function (DUF1480); InterPro: IPR009950 This family consists of several hypothetical Enterobacterial proteins of around 80 residues in length. The function of this family is unknown.
Probab=50.48 E-value=23 Score=20.44 Aligned_cols=41 Identities=27% Similarity=0.444 Sum_probs=29.6
Q ss_pred CeEEEEeeCCCchhhhhhCCC----CccceEEEEeCCeeeeeecCCCC
Q 031790 83 EIEVGEVDCGASKTLCSKVDI----HSYPTFKVFYDGKEVAKYQGPRD 126 (153)
Q Consensus 83 ~~~~~~vd~~~~~~~~~~~~v----~~~Pt~~~~~~g~~~~~~~g~~~ 126 (153)
+-.-+.|-|..++++|-++.- +++|.++ +|+.+.-|.+.++
T Consensus 25 ~~~tlsIPCksdpdlcmQLDgWDe~TSiPA~l---dgk~~lLyr~hYD 69 (80)
T PF07351_consen 25 GEDTLSIPCKSDPDLCMQLDGWDEHTSIPAIL---DGKPSLLYRQHYD 69 (80)
T ss_pred CCCeEEeecCCChhheeEecccccCCccceEE---CCceeeeeehhcc
Confidence 355678889999999988743 5889876 7776656655443
No 309
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=48.63 E-value=45 Score=18.24 Aligned_cols=57 Identities=18% Similarity=0.253 Sum_probs=31.2
Q ss_pred EEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC-chhhhhhCCCCccceEEEEeCCe
Q 031790 55 KFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA-SKTLCSKVDIHSYPTFKVFYDGK 116 (153)
Q Consensus 55 ~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~v~~~Pt~~~~~~g~ 116 (153)
.|+.+.|+.|.+..-.+.... .+ -.+....+|... .+.+.+......+|++.. .+|.
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~---~~-i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~~g~ 60 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETG---LG-DDVELVLVNPWSDDESLLAVNPLGKIPALVL-DDGE 60 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhC---CC-CCcEEEEcCcccCChHHHHhCCCCCCCEEEE-CCCC
Confidence 467889999988764443311 11 134555565322 334444445667897753 3443
No 310
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=48.31 E-value=35 Score=23.02 Aligned_cols=25 Identities=12% Similarity=0.036 Sum_probs=21.8
Q ss_pred EEEcCCChHHHhHHHHHHHHHHHhc
Q 031790 55 KFCVPWCKHCKNLGSLWEDLGKAME 79 (153)
Q Consensus 55 ~f~~~~C~~C~~~~~~~~~~~~~~~ 79 (153)
.|+..-||+|--..+.+.++.+.++
T Consensus 3 ~~~D~~cP~cyl~~~~l~~~~~~~~ 27 (201)
T cd03024 3 IWSDVVCPWCYIGKRRLEKALAELG 27 (201)
T ss_pred EEecCcCccHHHHHHHHHHHHHhCC
Confidence 4677899999999999999998885
No 311
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=47.46 E-value=55 Score=22.29 Aligned_cols=33 Identities=30% Similarity=0.387 Sum_probs=26.4
Q ss_pred eEEEEeCCeeeeeecCCCCHHHHHHHHHHHHHhHh
Q 031790 108 TFKVFYDGKEVAKYQGPRDVESLKTFVLEEAEKAA 142 (153)
Q Consensus 108 t~~~~~~g~~~~~~~g~~~~~~i~~~l~~~~~~~~ 142 (153)
++++|+.||.+ .+|..+.+++...++...+.-.
T Consensus 55 a~LIF~SGK~V--cTGaKs~ed~~~av~~~~~~L~ 87 (185)
T COG2101 55 AALIFRSGKVV--CTGAKSVEDVHRAVKKLAKKLK 87 (185)
T ss_pred eEEEEecCcEE--EeccCcHHHHHHHHHHHHHHHH
Confidence 67788899866 6899999999988888776544
No 312
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=45.53 E-value=97 Score=21.18 Aligned_cols=61 Identities=15% Similarity=0.142 Sum_probs=35.7
Q ss_pred CCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC-chhhhhhCCCCccceEEEEeCCe
Q 031790 48 KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA-SKTLCSKVDIHSYPTFKVFYDGK 116 (153)
Q Consensus 48 ~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~v~~~Pt~~~~~~g~ 116 (153)
++...+-.|+.++|+.|++..=.++.. + -.+....+|... .+++.+..--..+|++. .+|.
T Consensus 6 ~~~~~~~Ly~~~~s~~~~rv~~~L~e~-----g-l~~e~~~v~~~~~~~~~~~~nP~g~VPvL~--~~g~ 67 (211)
T PRK09481 6 NKRSVMTLFSGPTDIYSHQVRIVLAEK-----G-VSVEIEQVEKDNLPQDLIDLNPYQSVPTLV--DREL 67 (211)
T ss_pred CCCCeeEEeCCCCChhHHHHHHHHHHC-----C-CCCEEEeCCcccCCHHHHHhCCCCCCCEEE--ECCE
Confidence 344446667778999999877544433 2 135556666543 23444444456789985 3554
No 313
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=45.52 E-value=52 Score=18.07 Aligned_cols=68 Identities=16% Similarity=0.110 Sum_probs=36.5
Q ss_pred EEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC-chhhhhhCCC-CccceEEEEeCCeeeeeecCCCCHHHHHH
Q 031790 55 KFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA-SKTLCSKVDI-HSYPTFKVFYDGKEVAKYQGPRDVESLKT 132 (153)
Q Consensus 55 ~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~v-~~~Pt~~~~~~g~~~~~~~g~~~~~~i~~ 132 (153)
.++.+.|+.|.+..-.++...- .+....+|... .+.+.+.... ..+|++.. +|..+ .+...|.+
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~gl------~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~--~~~~l------~eS~aI~~ 68 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKGV------PYEYVEEDLGNKSELLLASNPVHKKIPVLLH--NGKPI------CESLIIVE 68 (74)
T ss_pred EEECCCCchHHHHHHHHHHcCC------CCEEEEeCcccCCHHHHHhCCCCCCCCEEEE--CCEEe------ehHHHHHH
Confidence 4567899999887755444321 23344455432 2233232232 58998853 44322 24466667
Q ss_pred HHHH
Q 031790 133 FVLE 136 (153)
Q Consensus 133 ~l~~ 136 (153)
+|++
T Consensus 69 yL~~ 72 (74)
T cd03058 69 YIDE 72 (74)
T ss_pred HHHh
Confidence 7654
No 314
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=44.78 E-value=73 Score=22.65 Aligned_cols=30 Identities=13% Similarity=-0.046 Sum_probs=24.5
Q ss_pred cEEEEEEcCCChHHHhHHHHHHHHHHHhcC
Q 031790 51 AWFVKFCVPWCKHCKNLGSLWEDLGKAMEG 80 (153)
Q Consensus 51 ~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~ 80 (153)
..+-.|...-||.|-.-++.++++...+++
T Consensus 6 i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~ 35 (225)
T COG2761 6 IEIDVFSDVVCPWCYIGKRRLEKALAEYPQ 35 (225)
T ss_pred EEEEEEeCCcCchhhcCHHHHHHHHHhcCc
Confidence 335555667999999999999999998886
No 315
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=44.60 E-value=48 Score=20.19 Aligned_cols=42 Identities=14% Similarity=0.195 Sum_probs=24.1
Q ss_pred EEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchh
Q 031790 54 VKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKT 96 (153)
Q Consensus 54 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~ 96 (153)
|.+|.+.+.-..+.+..-+++..-+.. +++.|-.+|+..++.
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a-~kI~fe~vDIa~~e~ 44 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEA-KKIPFEEVDIAMDEE 44 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHH-TT--EEEEETTT-HH
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHH-cCCCcEEEeCcCCHH
Confidence 344445565566666666666665554 479999999987543
No 316
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=44.37 E-value=36 Score=22.69 Aligned_cols=25 Identities=4% Similarity=-0.282 Sum_probs=21.4
Q ss_pred EEEcCCChHHHhHHHHHHHHHHHhc
Q 031790 55 KFCVPWCKHCKNLGSLWEDLGKAME 79 (153)
Q Consensus 55 ~f~~~~C~~C~~~~~~~~~~~~~~~ 79 (153)
+|+..-||+|--..+.++++...++
T Consensus 3 ~~~D~~cP~cy~~~~~l~~~~~~~~ 27 (192)
T cd03022 3 FYFDFSSPYSYLAHERLPALAARHG 27 (192)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHhC
Confidence 5678899999999999999887775
No 317
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=43.74 E-value=16 Score=24.92 Aligned_cols=25 Identities=16% Similarity=0.404 Sum_probs=12.9
Q ss_pred eCcccHHHHhccCCccEEEEEEcCC
Q 031790 36 LTPDTFTDKVKEKDTAWFVKFCVPW 60 (153)
Q Consensus 36 l~~~~~~~~~~~~~~~vlv~f~~~~ 60 (153)
++...+.+.+.+.++|+++.|.+-|
T Consensus 119 is~~~lr~~l~~~~~P~LllFGTGw 143 (185)
T PF09936_consen 119 ISYAELRRMLEEEDRPVLLLFGTGW 143 (185)
T ss_dssp B-HHHHHHHHHH--S-EEEEE--TT
T ss_pred cCHHHHHHHHhccCCeEEEEecCCC
Confidence 3445556666567778888888887
No 318
>PRK13617 psbV cytochrome c-550; Provisional
Probab=43.58 E-value=19 Score=24.35 Aligned_cols=20 Identities=35% Similarity=0.439 Sum_probs=13.6
Q ss_pred cCCChHHH---------hHHHHHHHHHHH
Q 031790 58 VPWCKHCK---------NLGSLWEDLGKA 77 (153)
Q Consensus 58 ~~~C~~C~---------~~~~~~~~~~~~ 77 (153)
...|..|+ ...+.++.++.-
T Consensus 67 ~~~C~~CH~~g~T~~n~~vg~dL~~L~aa 95 (170)
T PRK13617 67 NTSCGTCHAGGITKTNQNVGLDPETLALA 95 (170)
T ss_pred HcchhhhccCCCcCCCCCcCCCHHHHhcc
Confidence 88999999 445556555433
No 319
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=41.37 E-value=1.1e+02 Score=20.55 Aligned_cols=29 Identities=14% Similarity=0.130 Sum_probs=22.9
Q ss_pred eEEEEe-CCeeeeeecCCCCHHHHHHHHHH
Q 031790 108 TFKVFY-DGKEVAKYQGPRDVESLKTFVLE 136 (153)
Q Consensus 108 t~~~~~-~g~~~~~~~g~~~~~~i~~~l~~ 136 (153)
.+++++ +|+......|..+.+++.+++.-
T Consensus 127 aiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~L 156 (160)
T PF09695_consen 127 AIIVLDKQGKVQFVKEGALSPAEVQQVIAL 156 (160)
T ss_pred eEEEEcCCccEEEEECCCCCHHHHHHHHHH
Confidence 466664 78888888999999999988853
No 320
>PRK00394 transcription factor; Reviewed
Probab=40.74 E-value=1.2e+02 Score=20.72 Aligned_cols=32 Identities=31% Similarity=0.340 Sum_probs=25.2
Q ss_pred ceEEEEeCCeeeeeecCCCCHHHHHHHHHHHHHh
Q 031790 107 PTFKVFYDGKEVAKYQGPRDVESLKTFVLEEAEK 140 (153)
Q Consensus 107 Pt~~~~~~g~~~~~~~g~~~~~~i~~~l~~~~~~ 140 (153)
.++.+|..|+.+ .+|..+.++....+++....
T Consensus 47 ~t~lIf~sGKiv--~tGa~S~~~a~~a~~~~~~~ 78 (179)
T PRK00394 47 IAALIFRSGKVV--CTGAKSVEDLHEAVKIIIKK 78 (179)
T ss_pred eEEEEEcCCcEE--EEccCCHHHHHHHHHHHHHH
Confidence 578888999865 58988999888888776553
No 321
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=40.56 E-value=1e+02 Score=21.16 Aligned_cols=37 Identities=8% Similarity=-0.071 Sum_probs=22.8
Q ss_pred CCccEEEEEEcCCCh-HHHhHHHHHHHHHHHhcCCCCeEEEEe
Q 031790 48 KDTAWFVKFCVPWCK-HCKNLGSLWEDLGKAMEGDDEIEVGEV 89 (153)
Q Consensus 48 ~~~~vlv~f~~~~C~-~C~~~~~~~~~~~~~~~~~~~~~~~~v 89 (153)
+.+.+.+..|.++|| .|..+.. +++. ...++..|.++
T Consensus 36 ~~G~i~ieL~~~~aP~t~~NF~~----L~~~-g~Ydg~~FhRv 73 (190)
T PRK10903 36 SAGNIELELNSQKAPVSVKNFVD----YVNS-GFYNNTTFHRV 73 (190)
T ss_pred ccccEEEEEeCCCCcHHHHHHHH----HHhc-CCcCCcEEEEE
Confidence 455779999999997 5555553 3332 11235777766
No 322
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=38.97 E-value=30 Score=24.09 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=23.4
Q ss_pred EEEEEEcCCChHHHhHHHHHHHHHHHh
Q 031790 52 WFVKFCVPWCKHCKNLGSLWEDLGKAM 78 (153)
Q Consensus 52 vlv~f~~~~C~~C~~~~~~~~~~~~~~ 78 (153)
.+.+.+.|-|++|--..|.++++....
T Consensus 3 ~lhYifDPmCgWCyGa~Pll~~l~~~~ 29 (212)
T COG3531 3 TLHYIFDPMCGWCYGAAPLLEALSAQP 29 (212)
T ss_pred eeEEecCcchhhhhCccHHHHHHHhcC
Confidence 367889999999999999999987754
No 323
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=38.68 E-value=1.3e+02 Score=21.43 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=35.3
Q ss_pred ChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEeCCeeee
Q 031790 61 CKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYDGKEVA 119 (153)
Q Consensus 61 C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 119 (153)
-.||..+...++.+++.+.. -+.++--|++-....+. .++.+++|+.+.
T Consensus 168 mkHsv~iMk~Lrrla~el~K--tiviVlHDINfAS~YsD--------~IVAlK~G~vv~ 216 (252)
T COG4604 168 MKHSVQIMKILRRLADELGK--TIVVVLHDINFASCYSD--------HIVALKNGKVVK 216 (252)
T ss_pred hHHHHHHHHHHHHHHHHhCC--eEEEEEecccHHHhhhh--------heeeecCCEEEe
Confidence 37999999999999999976 56677667653322222 467788998763
No 324
>PF08599 Nbs1_C: DNA damage repair protein Nbs1; InterPro: IPR013908 This C-terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1 [].
Probab=38.51 E-value=60 Score=17.99 Aligned_cols=37 Identities=19% Similarity=0.324 Sum_probs=22.7
Q ss_pred CCCccceEEEEeCCe-eeeeecCCCCHHHHHHHHHHHHHhHhh
Q 031790 102 DIHSYPTFKVFYDGK-EVAKYQGPRDVESLKTFVLEEAEKAAT 143 (153)
Q Consensus 102 ~v~~~Pt~~~~~~g~-~~~~~~g~~~~~~i~~~l~~~~~~~~~ 143 (153)
|..+.|.|+ .|. .+....+.. .++.+|+.+.++....
T Consensus 14 Ga~~lP~II---GGSDLi~h~~~kn--seleeWl~~e~E~~~q 51 (65)
T PF08599_consen 14 GAGGLPHII---GGSDLIAHHAGKN--SELEEWLRQEMEEQRQ 51 (65)
T ss_pred CCCCCCeee---cchhhhhcccccc--ccHHHHHHHHHHHHHH
Confidence 445788876 443 333333332 3888999888876654
No 325
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=38.50 E-value=88 Score=18.67 Aligned_cols=69 Identities=20% Similarity=0.213 Sum_probs=41.0
Q ss_pred cCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCch-hhhhhCCCCccceEEEEeCCeeeeeecCCCCHHHHHHHHHH
Q 031790 58 VPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASK-TLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFVLE 136 (153)
Q Consensus 58 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~i~~~l~~ 136 (153)
..+|++|++..=.+... + -.+.+..+|..+.+ .+.+..-...+|++. .+|..+ .+...|.++|++
T Consensus 19 ~g~cpf~~rvrl~L~eK-----g-i~ye~~~vd~~~~p~~~~~~nP~g~vPvL~--~~~~~i------~eS~~I~eYLde 84 (91)
T cd03061 19 IGNCPFCQRLFMVLWLK-----G-VVFNVTTVDMKRKPEDLKDLAPGTQPPFLL--YNGEVK------TDNNKIEEFLEE 84 (91)
T ss_pred CCCChhHHHHHHHHHHC-----C-CceEEEEeCCCCCCHHHHHhCCCCCCCEEE--ECCEEe------cCHHHHHHHHHH
Confidence 36899999877444332 2 13555666655534 444444556799664 345433 356778888877
Q ss_pred HHHh
Q 031790 137 EAEK 140 (153)
Q Consensus 137 ~~~~ 140 (153)
...+
T Consensus 85 ~~~~ 88 (91)
T cd03061 85 TLCP 88 (91)
T ss_pred HccC
Confidence 6543
No 326
>PHA02151 hypothetical protein
Probab=38.22 E-value=23 Score=23.62 Aligned_cols=12 Identities=33% Similarity=1.032 Sum_probs=10.1
Q ss_pred cEEEEEEcCCCh
Q 031790 51 AWFVKFCVPWCK 62 (153)
Q Consensus 51 ~vlv~f~~~~C~ 62 (153)
.-+|+||..||.
T Consensus 205 ~~~v~fy~kwct 216 (217)
T PHA02151 205 DRYVHFYKKWCT 216 (217)
T ss_pred ceEEEEehhhcc
Confidence 458999999995
No 327
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=38.14 E-value=11 Score=24.45 Aligned_cols=13 Identities=23% Similarity=0.542 Sum_probs=11.0
Q ss_pred CChHHHhHHHHHH
Q 031790 60 WCKHCKNLGSLWE 72 (153)
Q Consensus 60 ~C~~C~~~~~~~~ 72 (153)
.||+|+.+.|.+-
T Consensus 11 ~CPhCRQ~ipALt 23 (163)
T TIGR02652 11 RCPHCRQNIPALT 23 (163)
T ss_pred cCchhhcccchhe
Confidence 7999999988763
No 328
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=37.76 E-value=11 Score=24.43 Aligned_cols=13 Identities=23% Similarity=0.557 Sum_probs=11.0
Q ss_pred CChHHHhHHHHHH
Q 031790 60 WCKHCKNLGSLWE 72 (153)
Q Consensus 60 ~C~~C~~~~~~~~ 72 (153)
.||+|+.+.|.+-
T Consensus 8 ~CPhCRq~ipALt 20 (161)
T PF09654_consen 8 QCPHCRQTIPALT 20 (161)
T ss_pred cCchhhcccchhe
Confidence 7999999988763
No 329
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=37.71 E-value=69 Score=17.24 Aligned_cols=22 Identities=5% Similarity=0.048 Sum_probs=9.0
Q ss_pred HHHHHHHhhhcCCCceEEeCcc
Q 031790 18 LLLSLSLAMIHSKSEVITLTPD 39 (153)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~l~~~ 39 (153)
.++.+.++..+....+-.++..
T Consensus 25 ~f~lI~~l~qq~~~y~HH~d~S 46 (61)
T PF06692_consen 25 VFFLITSLGQQGNTYVHHFDNS 46 (61)
T ss_pred HHHHHhhhccCCCeeEEeecCc
Confidence 3333344333333344455443
No 330
>PLN00062 TATA-box-binding protein; Provisional
Probab=36.98 E-value=1.4e+02 Score=20.42 Aligned_cols=31 Identities=26% Similarity=0.250 Sum_probs=23.3
Q ss_pred ceEEEEeCCeeeeeecCCCCHHHHHHHHHHHHH
Q 031790 107 PTFKVFYDGKEVAKYQGPRDVESLKTFVLEEAE 139 (153)
Q Consensus 107 Pt~~~~~~g~~~~~~~g~~~~~~i~~~l~~~~~ 139 (153)
.++.+|..|+.+ .+|..+.++....+++...
T Consensus 48 ~t~lIF~SGKiv--iTGaks~e~a~~a~~~~~~ 78 (179)
T PLN00062 48 TTALIFASGKMV--CTGAKSEHDSKLAARKYAR 78 (179)
T ss_pred EEEEEECCCeEE--EEecCCHHHHHHHHHHHHH
Confidence 378888999866 5888888888877766554
No 331
>PF06480 FtsH_ext: FtsH Extracellular; InterPro: IPR011546 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in the FtsH family of proteins that include FtsH a membrane-bound ATP-dependent protease universally conserved in prokaryotes []. The FtsH peptidases, which belong to MEROPS peptidase family M41 (clan MA(E)), efficiently degrade proteins that have a low thermodynamic stability - e.g. they lack robust unfoldase activity. This feature may be key and implies that this could be a criterion for degrading a protein. In Oenococcus oeni (Leuconostoc oenos) FtsH is involved in protection against environmental stress [], and shows increased expression under heat or osmotic stress. These two lines of evidence suggest that it is a fundamental prokaryotic self-protection mechanism that checks if proteins are correctly folded. The precise function of this N-terminal region is unclear. ; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0016021 integral to membrane; PDB: 2LNA_A.
Probab=35.42 E-value=19 Score=21.42 Aligned_cols=22 Identities=9% Similarity=0.158 Sum_probs=11.0
Q ss_pred hcCCCceEEeCcccHHHHhccC
Q 031790 27 IHSKSEVITLTPDTFTDKVKEK 48 (153)
Q Consensus 27 ~~~~~~~~~l~~~~~~~~~~~~ 48 (153)
........+++..+|.+.+.++
T Consensus 21 ~~~~~~~~~i~YS~F~~~l~~g 42 (110)
T PF06480_consen 21 NSNNSQTKEISYSEFLQMLEKG 42 (110)
T ss_dssp -----SSEE--HHHHHHTGGGT
T ss_pred hcccCCCcEECHHHHHHHHHcC
Confidence 4455677788888888777543
No 332
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=35.16 E-value=1.6e+02 Score=20.74 Aligned_cols=81 Identities=14% Similarity=0.250 Sum_probs=48.2
Q ss_pred cHHHHhccCCccEEEEEE-----cCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCc--------------------
Q 031790 40 TFTDKVKEKDTAWFVKFC-----VPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGAS-------------------- 94 (153)
Q Consensus 40 ~~~~~~~~~~~~vlv~f~-----~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-------------------- 94 (153)
.+.+.....++.++.+|- ...|+-|-.+...+.-....+.. .++.|+.|.-.--
T Consensus 59 ~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~-rd~tfa~vSraP~~~i~afk~rmGW~~pw~Ss~ 137 (211)
T PF05988_consen 59 SLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHA-RDTTFAVVSRAPLEKIEAFKRRMGWTFPWYSSY 137 (211)
T ss_pred cHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHh-CCceEEEEeCCCHHHHHHHHHhcCCCceEEEcC
Confidence 344545445566555554 57899999999888544444443 2588887764321
Q ss_pred -hhhhhhCCC-----CccceEEEE-eCC-eeeeee
Q 031790 95 -KTLCSKVDI-----HSYPTFKVF-YDG-KEVAKY 121 (153)
Q Consensus 95 -~~~~~~~~v-----~~~Pt~~~~-~~g-~~~~~~ 121 (153)
..+...|++ ...|.+-+| ++| ++...|
T Consensus 138 gs~Fn~D~~~~~~~~~~~~g~svF~Rdg~~VfhTy 172 (211)
T PF05988_consen 138 GSDFNYDFGVSFDEGGEMPGLSVFLRDGGRVFHTY 172 (211)
T ss_pred CCcccccccceeccCCCceeEEEEEEcCCEEEEEe
Confidence 223345666 567888777 455 444444
No 333
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=34.51 E-value=48 Score=23.05 Aligned_cols=38 Identities=16% Similarity=0.174 Sum_probs=25.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhcCCCceEEeCcccHHHHh
Q 031790 8 SFALNLTSLVLLLSLSLAMIHSKSEVITLTPDTFTDKV 45 (153)
Q Consensus 8 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 45 (153)
+....+++.+.++.++....+.++++.++.+.+....+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (205)
T PRK06231 7 RVFKLLLLSFSFLIISLFLVSCTENVEELKSKSIINEL 44 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCChhhcCHHHHHHHh
Confidence 34444444455555666677888999999887766555
No 334
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=34.36 E-value=11 Score=26.96 Aligned_cols=11 Identities=36% Similarity=0.984 Sum_probs=8.6
Q ss_pred EcCCChHHHhH
Q 031790 57 CVPWCKHCKNL 67 (153)
Q Consensus 57 ~~~~C~~C~~~ 67 (153)
-.+||.+|.+-
T Consensus 9 ~kpwcwycnre 19 (341)
T KOG2893|consen 9 DKPWCWYCNRE 19 (341)
T ss_pred CCceeeecccc
Confidence 37899999653
No 335
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=33.50 E-value=1.1e+02 Score=20.76 Aligned_cols=30 Identities=27% Similarity=0.308 Sum_probs=22.6
Q ss_pred eEEEEeCCeeeeeecCCCCHHHHHHHHHHHHH
Q 031790 108 TFKVFYDGKEVAKYQGPRDVESLKTFVLEEAE 139 (153)
Q Consensus 108 t~~~~~~g~~~~~~~g~~~~~~i~~~l~~~~~ 139 (153)
++.+|..|+.+ .+|..+.+++.+.++....
T Consensus 140 ~~lIF~SGKvv--itGaks~~~~~~a~~~i~~ 169 (174)
T cd04518 140 VLLLFSSGKMV--ITGAKSEEDAKRAVEKLLS 169 (174)
T ss_pred EEEEeCCCEEE--EEecCCHHHHHHHHHHHHH
Confidence 56677788765 5898899998888866654
No 336
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=32.58 E-value=54 Score=22.86 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=19.2
Q ss_pred CchhhhhhCCCCccceEEEEeCCeee
Q 031790 93 ASKTLCSKVDIHSYPTFKVFYDGKEV 118 (153)
Q Consensus 93 ~~~~~~~~~~v~~~Pt~~~~~~g~~~ 118 (153)
.+..+.++|++..+|+++. .+|+..
T Consensus 173 Q~g~Lt~rF~I~~VPavV~-q~g~~l 197 (202)
T TIGR02743 173 QHGKLTQKFGIKHVPARVS-QEGLRL 197 (202)
T ss_pred CCchHhhccCceeeceEEE-ecCCEE
Confidence 4567889999999999975 566543
No 337
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=32.44 E-value=82 Score=17.39 Aligned_cols=68 Identities=15% Similarity=0.203 Sum_probs=37.5
Q ss_pred EEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC---chhhhhhCCCCccceEEEEeCCeeeeeecCCCCHHHHH
Q 031790 55 KFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA---SKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLK 131 (153)
Q Consensus 55 ~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~i~ 131 (153)
.|+.+.|+.|.+..-.++.. + -.+....+|..+ .+++.+..-...+|++.. .+|..+ .....|.
T Consensus 3 Ly~~~~~~~~~~~~~~l~~~-----g-i~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~-~~g~~l------~es~aI~ 69 (75)
T cd03044 3 LYTYPGNPRSLKILAAAKYN-----G-LDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEG-ADGFCL------FESNAIA 69 (75)
T ss_pred EecCCCCccHHHHHHHHHHc-----C-CceEEEecccccccCCHHHHHhCCCCCCCEEEc-CCCCEE------eeHHHHH
Confidence 46777888888766444432 2 135556666542 334444445668899854 234322 2344555
Q ss_pred HHHH
Q 031790 132 TFVL 135 (153)
Q Consensus 132 ~~l~ 135 (153)
++|.
T Consensus 70 ~yL~ 73 (75)
T cd03044 70 YYVA 73 (75)
T ss_pred HHHh
Confidence 5553
No 338
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=32.26 E-value=1.2e+02 Score=18.28 Aligned_cols=71 Identities=18% Similarity=0.339 Sum_probs=37.8
Q ss_pred CChHHHhHH---HHHH----HHHHHhcCCCCeEEEEeeCCCchh------hhhhC--CCCccceEEEEeCCeeeeeecCC
Q 031790 60 WCKHCKNLG---SLWE----DLGKAMEGDDEIEVGEVDCGASKT------LCSKV--DIHSYPTFKVFYDGKEVAKYQGP 124 (153)
Q Consensus 60 ~C~~C~~~~---~~~~----~~~~~~~~~~~~~~~~vd~~~~~~------~~~~~--~v~~~Pt~~~~~~g~~~~~~~g~ 124 (153)
-|..|..+- ..++ .+.+++++ ..+.+-.||+.+.++ ++++. .-.-+|.+++ +|+.+. .|.
T Consensus 8 ~CASCVn~PsSkeTyeWL~aal~RKyp~-~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i--~~eiV~--EGn 82 (93)
T PF07315_consen 8 ICASCVNAPSSKETYEWLEAALKRKYPD-QPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVI--NDEIVA--EGN 82 (93)
T ss_dssp --GGGSSS--HHHHHHHHHHHHHHH-TT-S-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEE--TTEEEE--ESS
T ss_pred cchhhcCCCCchhHHHHHHHHHhCcCCC-CceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEE--CCEEEe--cCC
Confidence 577786542 2332 23456665 469999999975433 33332 3346787766 777663 688
Q ss_pred CCHHHHHHHHH
Q 031790 125 RDVESLKTFVL 135 (153)
Q Consensus 125 ~~~~~i~~~l~ 135 (153)
...+.|.++++
T Consensus 83 p~LK~I~~~~e 93 (93)
T PF07315_consen 83 PQLKDIYEEME 93 (93)
T ss_dssp --HHHHHHHHH
T ss_pred ccHHHHHHhhC
Confidence 78888777653
No 339
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=31.92 E-value=1.2e+02 Score=20.54 Aligned_cols=30 Identities=27% Similarity=0.286 Sum_probs=22.6
Q ss_pred eEEEEeCCeeeeeecCCCCHHHHHHHHHHHHH
Q 031790 108 TFKVFYDGKEVAKYQGPRDVESLKTFVLEEAE 139 (153)
Q Consensus 108 t~~~~~~g~~~~~~~g~~~~~~i~~~l~~~~~ 139 (153)
++.+|..|+.+ .+|..+.++....+++...
T Consensus 49 t~lIF~SGKiv--iTGaks~e~a~~a~~~i~~ 78 (174)
T cd04516 49 TALIFSSGKMV--CTGAKSEDDSKLAARKYAR 78 (174)
T ss_pred EEEEECCCeEE--EEecCCHHHHHHHHHHHHH
Confidence 57788899865 5888888888877766554
No 340
>PF11317 DUF3119: Protein of unknown function (DUF3119); InterPro: IPR021467 This family of proteins has no known function.
Probab=31.90 E-value=86 Score=19.80 Aligned_cols=34 Identities=15% Similarity=0.169 Sum_probs=27.5
Q ss_pred CccceEEEEeCCeeeeeecCCCCHHHHHHHHHHH
Q 031790 104 HSYPTFKVFYDGKEVAKYQGPRDVESLKTFVLEE 137 (153)
Q Consensus 104 ~~~Pt~~~~~~g~~~~~~~g~~~~~~i~~~l~~~ 137 (153)
.++|.+++|+..+.++-..=-.+.+.+.+-+++.
T Consensus 81 p~~PiL~YFkE~qsiHFlPiiFd~~~L~~~l~~r 114 (116)
T PF11317_consen 81 PGFPILFYFKETQSIHFLPIIFDPKQLREQLEER 114 (116)
T ss_pred CCCCEEEEEecCCcceeeeeecCHHHHHHHHHHh
Confidence 4789999999888887777777888888877664
No 341
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=31.39 E-value=1.2e+02 Score=20.49 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=21.5
Q ss_pred eEEEEeCCeeeeeecCCCCHHHHHHHHHHHHH
Q 031790 108 TFKVFYDGKEVAKYQGPRDVESLKTFVLEEAE 139 (153)
Q Consensus 108 t~~~~~~g~~~~~~~g~~~~~~i~~~l~~~~~ 139 (153)
++.+|..|+.+ .+|..+.+++.+.++....
T Consensus 141 t~lIF~sGkvv--itGaks~~~~~~a~~~i~~ 170 (174)
T cd00652 141 VLLIFVSGKIV--ITGAKSREDIYEAVEKIYP 170 (174)
T ss_pred EEEEEcCCEEE--EEecCCHHHHHHHHHHHHH
Confidence 45667777655 5888898988888766543
No 342
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=30.94 E-value=1.3e+02 Score=20.32 Aligned_cols=32 Identities=25% Similarity=0.214 Sum_probs=23.8
Q ss_pred ceEEEEeCCeeeeeecCCCCHHHHHHHHHHHHHh
Q 031790 107 PTFKVFYDGKEVAKYQGPRDVESLKTFVLEEAEK 140 (153)
Q Consensus 107 Pt~~~~~~g~~~~~~~g~~~~~~i~~~l~~~~~~ 140 (153)
.++.+|.+|+.+ .+|..+.++..+.+++....
T Consensus 48 ~t~lIF~sGKiv--iTGaks~~~~~~a~~~~~~~ 79 (174)
T cd04517 48 ATASVWSSGKIT--ITGATSEEEAKQAARRAARL 79 (174)
T ss_pred EEEEEECCCeEE--EEccCCHHHHHHHHHHHHHH
Confidence 367788899865 58888888888877666553
No 343
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=29.82 E-value=1.2e+02 Score=18.48 Aligned_cols=21 Identities=10% Similarity=0.313 Sum_probs=15.3
Q ss_pred EEEEEcCCChHHHhH-HHHHHH
Q 031790 53 FVKFCVPWCKHCKNL-GSLWED 73 (153)
Q Consensus 53 lv~f~~~~C~~C~~~-~~~~~~ 73 (153)
+-.||-.-||.|+++ ...+..
T Consensus 3 v~vyyESlCPd~~~fi~~~L~p 24 (108)
T PF03227_consen 3 VEVYYESLCPDCRRFITNQLFP 24 (108)
T ss_pred EEEEEEecCHhHHHHHHHHHHH
Confidence 556889999999986 344444
No 344
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=29.32 E-value=1.9e+02 Score=19.78 Aligned_cols=16 Identities=13% Similarity=0.524 Sum_probs=11.3
Q ss_pred EEcCCChHHHhHHHHH
Q 031790 56 FCVPWCKHCKNLGSLW 71 (153)
Q Consensus 56 f~~~~C~~C~~~~~~~ 71 (153)
++.+.||+|++..-.+
T Consensus 3 y~~~~sp~~~kvr~~L 18 (209)
T TIGR02182 3 YIYDHCPFCVRARMIF 18 (209)
T ss_pred ecCCCCChHHHHHHHH
Confidence 4567799998776443
No 345
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=29.15 E-value=1.5e+02 Score=19.67 Aligned_cols=43 Identities=19% Similarity=0.290 Sum_probs=33.9
Q ss_pred CccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031790 49 DTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCG 92 (153)
Q Consensus 49 ~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~ 92 (153)
++-+.+.++++.++.|.-+...++.+++.+.+ .++.+-.+++.
T Consensus 127 ~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~-~~v~i~~~~~~ 169 (171)
T PF07700_consen 127 DNELTLHYRSPRPGLCPYVIGLIRGAAKHFFE-LDVEIEHVECM 169 (171)
T ss_dssp TTEEEEEEEESSSSTHHHHHHHHHHHHHHTTE-EEEEEEEEECC
T ss_pred CCEEEEEEECCCcCHHHHHHHHHHHHHHHhCC-CCeEEEEeccc
Confidence 44568889999999999999999999999875 34666666554
No 346
>PF12617 LdpA_C: Iron-Sulfur binding protein C terminal; InterPro: IPR021039 This entry represents the C-terminal region of the iron-sulphur protein LdpA (Light dependent period), which is found in phototropic organisms. LdpA was originally identified in cyanobacteria where it is involved in light-dependent modulation of the circadian clock. The presence of iron-sulphur clusters on LdpA suggests that it may modulate the circadian clock as an indirect function of light intensity by sensing changes in cellular physiology [].
Probab=28.94 E-value=2e+02 Score=19.82 Aligned_cols=74 Identities=12% Similarity=0.301 Sum_probs=50.4
Q ss_pred hHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhC----C-CCccceEEEEe-CCeeeeeecCCCCHHHHHHHHH
Q 031790 62 KHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKV----D-IHSYPTFKVFY-DGKEVAKYQGPRDVESLKTFVL 135 (153)
Q Consensus 62 ~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~----~-v~~~Pt~~~~~-~g~~~~~~~g~~~~~~i~~~l~ 135 (153)
+.-..+...++.++..... ++.+.|.|.....+.+.+ . +...|...++. +|.++.--.|.-+...-+++-+
T Consensus 18 gr~~~F~~lw~~l~~~~~~---Lk~lAiSc~~~~~li~~L~~~~~~l~~l~~~~iWQ~DGRPMSGDIG~GTt~aaV~l~~ 94 (183)
T PF12617_consen 18 GRLAAFERLWQALAPSVPQ---LKLLAISCPDGEGLIDYLWQLYEILRPLPCPLIWQLDGRPMSGDIGDGTTRAAVKLAQ 94 (183)
T ss_pred CccHHHHHHHHHHHhhhhh---ccEEEEECCCCHHHHHHHHHHHHHHhccCCCeeEeeCCcccCCCCCCcHHHHHHHHHH
Confidence 4556677777777776664 889999998876665543 2 34577777776 8887765566666666666666
Q ss_pred HHH
Q 031790 136 EEA 138 (153)
Q Consensus 136 ~~~ 138 (153)
+..
T Consensus 95 ~v~ 97 (183)
T PF12617_consen 95 KVL 97 (183)
T ss_pred HHh
Confidence 654
No 347
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=28.22 E-value=1e+02 Score=16.24 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=19.6
Q ss_pred cCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCc
Q 031790 58 VPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGAS 94 (153)
Q Consensus 58 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~ 94 (153)
.=.|+.|.. .+++.....++ +.-+.+|...+
T Consensus 6 ~m~C~~C~~---~v~~~l~~~~G---V~~v~vd~~~~ 36 (62)
T PF00403_consen 6 GMTCEGCAK---KVEKALSKLPG---VKSVKVDLETK 36 (62)
T ss_dssp STTSHHHHH---HHHHHHHTSTT---EEEEEEETTTT
T ss_pred CcccHHHHH---HHHHHHhcCCC---CcEEEEECCCC
Confidence 347999954 34445455554 87788886643
No 348
>PLN02402 cytidine deaminase
Probab=27.98 E-value=98 Score=23.10 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=15.7
Q ss_pred ccEEEEEEcCCChHHHhHHHHH
Q 031790 50 TAWFVKFCVPWCKHCKNLGSLW 71 (153)
Q Consensus 50 ~~vlv~f~~~~C~~C~~~~~~~ 71 (153)
+..-|.+..+-|++|+++..++
T Consensus 93 ~i~~iaV~~sPCG~CRQ~l~Ef 114 (303)
T PLN02402 93 HLKYVAVSAAPCGHCRQFFQEI 114 (303)
T ss_pred ceEEEEEEeCCCcccHHHHHHh
Confidence 3445555678999999986555
No 349
>PRK13669 hypothetical protein; Provisional
Probab=27.71 E-value=1.3e+02 Score=17.48 Aligned_cols=49 Identities=22% Similarity=0.344 Sum_probs=33.7
Q ss_pred CCCeEEEEeeCCCchhhhhhCCCCccceEEEEeCCeeeeeecCCCCHHHHHHHHHHHHHh
Q 031790 81 DDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFVLEEAEK 140 (153)
Q Consensus 81 ~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~i~~~l~~~~~~ 140 (153)
+.++.+...+|-..-..|++ ..+.+-||+.+ . ..+++++.+-|.+.++.
T Consensus 26 dP~~dVie~gCls~CG~C~~-------~~FAlVng~~V---~-a~t~eeL~~kI~~~i~e 74 (78)
T PRK13669 26 DPNLDVLEYGCLGYCGICSE-------GLFALVNGEVV---E-GETPEELVENIYAHLEE 74 (78)
T ss_pred CCCceEEEcchhhhCcCccc-------CceEEECCeEe---e-cCCHHHHHHHHHHHHhh
Confidence 34588999998877666654 33445588655 3 34888888888877764
No 350
>PF15379 DUF4606: Domain of unknown function (DUF4606)
Probab=26.80 E-value=73 Score=19.62 Aligned_cols=18 Identities=11% Similarity=0.267 Sum_probs=13.6
Q ss_pred cCCChHHHhHHHHHHHHH
Q 031790 58 VPWCKHCKNLGSLWEDLG 75 (153)
Q Consensus 58 ~~~C~~C~~~~~~~~~~~ 75 (153)
+..|+.|..-...+.+.+
T Consensus 31 ~s~Cp~C~kkraeLa~~~ 48 (104)
T PF15379_consen 31 SSQCPSCNKKRAELAQSA 48 (104)
T ss_pred cccChHHHHHHHHHHHHH
Confidence 578999998877665543
No 351
>PF13073 DUF3937: Protein of unknown function (DUF3937)
Probab=26.49 E-value=1.2e+02 Score=16.96 Aligned_cols=30 Identities=10% Similarity=0.230 Sum_probs=19.3
Q ss_pred hcCCCceEEeCcccHHHHhccCCccEEEEE
Q 031790 27 IHSKSEVITLTPDTFTDKVKEKDTAWFVKF 56 (153)
Q Consensus 27 ~~~~~~~~~l~~~~~~~~~~~~~~~vlv~f 56 (153)
..+...+.-+-++.|...+.+..+-++|..
T Consensus 32 l~saagi~w~i~e~Wktilld~P~gILVil 61 (73)
T PF13073_consen 32 LESAAGIKWVIPEIWKTILLDAPEGILVIL 61 (73)
T ss_pred HHhccCCeeechhhHhHHhhcCCccchhhh
Confidence 334556777778888888876555545543
No 352
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=26.29 E-value=44 Score=23.44 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=19.3
Q ss_pred CchhhhhhCCCCccceEEEE-eCCeee
Q 031790 93 ASKTLCSKVDIHSYPTFKVF-YDGKEV 118 (153)
Q Consensus 93 ~~~~~~~~~~v~~~Pt~~~~-~~g~~~ 118 (153)
.+..+.++|+|..+|+++.- .+|+..
T Consensus 171 Q~G~Lt~rF~I~~VPAvV~~~q~G~~l 197 (209)
T PRK13738 171 QNGVLCQRFGIDQVPARVSAVPGGRFL 197 (209)
T ss_pred CcchHHHhcCCeeeceEEEEcCCCCEE
Confidence 34568899999999999752 566543
No 353
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=26.01 E-value=3.1e+02 Score=21.17 Aligned_cols=91 Identities=13% Similarity=0.278 Sum_probs=57.9
Q ss_pred cEEEEEE-----cCCChHH-HhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhh----------------------hhCC
Q 031790 51 AWFVKFC-----VPWCKHC-KNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLC----------------------SKVD 102 (153)
Q Consensus 51 ~vlv~f~-----~~~C~~C-~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~----------------------~~~~ 102 (153)
-++|..- +.|=+.. +-....|+++.+...+..++.|+.||--+.-..| +--.
T Consensus 212 ~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDr 291 (423)
T KOG0744|consen 212 GQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDR 291 (423)
T ss_pred ceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHH
Confidence 3466543 4565554 4445677788887777778999999853322111 2225
Q ss_pred CCccceEEEEeCCe-------------eeeeecCCCCHHHHHHHHHHHHHhH
Q 031790 103 IHSYPTFKVFYDGK-------------EVAKYQGPRDVESLKTFVLEEAEKA 141 (153)
Q Consensus 103 v~~~Pt~~~~~~g~-------------~~~~~~g~~~~~~i~~~l~~~~~~~ 141 (153)
++..|-+++..... .+..|.|.++...+.+.++.-+.+-
T Consensus 292 lK~~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL 343 (423)
T KOG0744|consen 292 LKRYPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEEL 343 (423)
T ss_pred hccCCCEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHH
Confidence 67788887774221 3457889999888888776655543
No 354
>PRK13816 ribosome-binding factor A; Provisional
Probab=25.46 E-value=1.9e+02 Score=18.54 Aligned_cols=39 Identities=10% Similarity=0.221 Sum_probs=26.4
Q ss_pred hhhhhhCCCCccceEEEEeCCeeeeeecCCCCHHHHHHHHHHHHHh
Q 031790 95 KTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFVLEEAEK 140 (153)
Q Consensus 95 ~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~i~~~l~~~~~~ 140 (153)
..++++.+.+.+|.+.|+.+.. ......|.+.|.+...+
T Consensus 83 ~~L~krl~lR~~PeL~F~~D~s-------~e~~~~I~~Ll~~i~~~ 121 (131)
T PRK13816 83 TELSRRIKTRITPRLRFHYDKT-------NAYGNYMFGLIEKAVQD 121 (131)
T ss_pred HHHHhhcCCeECCEEEEEECCC-------hhHHHHHHHHHHHHHhh
Confidence 4778889999999999875442 12345666666665443
No 355
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=25.04 E-value=45 Score=18.18 Aligned_cols=13 Identities=31% Similarity=0.741 Sum_probs=9.8
Q ss_pred cCCChHHHhHHHH
Q 031790 58 VPWCKHCKNLGSL 70 (153)
Q Consensus 58 ~~~C~~C~~~~~~ 70 (153)
.|-||.|++....
T Consensus 44 ~PVCP~Ck~iye~ 56 (58)
T PF11238_consen 44 FPVCPECKEIYES 56 (58)
T ss_pred CCCCcCHHHHHHh
Confidence 4689999886654
No 356
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]
Probab=25.00 E-value=18 Score=26.39 Aligned_cols=8 Identities=25% Similarity=0.957 Sum_probs=5.7
Q ss_pred CCChHHHh
Q 031790 59 PWCKHCKN 66 (153)
Q Consensus 59 ~~C~~C~~ 66 (153)
-|||.|+.
T Consensus 266 ~~CP~CQ~ 273 (273)
T COG0266 266 FYCPVCQK 273 (273)
T ss_pred EeCCCCCC
Confidence 38888863
No 357
>PRK10387 glutaredoxin 2; Provisional
Probab=24.91 E-value=2.2e+02 Score=19.13 Aligned_cols=55 Identities=13% Similarity=0.194 Sum_probs=27.8
Q ss_pred EEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEeCCe
Q 031790 55 KFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYDGK 116 (153)
Q Consensus 55 ~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 116 (153)
.++.+.|++|.+..-.++...- .+....++..+.....+......+|++.. .+|.
T Consensus 3 Ly~~~~sp~~~kv~~~L~~~gi------~y~~~~~~~~~~~~~~~~~p~~~VPvL~~-~~g~ 57 (210)
T PRK10387 3 LYIYDHCPFCVKARMIFGLKNI------PVELIVLANDDEATPIRMIGQKQVPILQK-DDGS 57 (210)
T ss_pred EEeCCCCchHHHHHHHHHHcCC------CeEEEEcCCCchhhHHHhcCCcccceEEe-cCCe
Confidence 3467789999987744433321 23334444332222222233457888843 3443
No 358
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=24.80 E-value=2.5e+02 Score=19.63 Aligned_cols=35 Identities=11% Similarity=0.118 Sum_probs=24.2
Q ss_pred ccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEee
Q 031790 50 TAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVD 90 (153)
Q Consensus 50 ~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd 90 (153)
...+.+|-.+.|+.|......+.. ....+-++-|+
T Consensus 109 ~~rlalFvkd~C~~C~~~~~~l~a------~~~~~Diylvg 143 (200)
T TIGR03759 109 GGRLALFVKDDCVACDARVQRLLA------DNAPLDLYLVG 143 (200)
T ss_pred CCeEEEEeCCCChHHHHHHHHHhc------CCCceeEEEec
Confidence 344778888999999877655522 23457777777
No 359
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=24.11 E-value=3.3e+02 Score=20.79 Aligned_cols=67 Identities=9% Similarity=-0.053 Sum_probs=45.5
Q ss_pred HHHHhccCCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEe
Q 031790 41 FTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFY 113 (153)
Q Consensus 41 ~~~~~~~~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 113 (153)
-.+.++.+..+++|.=....+ .+.+..+.+.....+.+.|...|..+.+.+.+-|....+=.++.|.
T Consensus 19 ~l~L~~~gy~v~~vDNl~n~~------~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd~V~Hfa 85 (343)
T KOG1371|consen 19 VLALLKRGYGVVIVDNLNNSY------LESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFDAVMHFA 85 (343)
T ss_pred HHHHHhCCCcEEEEecccccc------hhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCceEEeeh
Confidence 334455555565554443333 5666666666664558999999999888888888888777777763
No 360
>PHA02131 hypothetical protein
Probab=23.96 E-value=1.3e+02 Score=16.18 Aligned_cols=19 Identities=5% Similarity=0.090 Sum_probs=14.6
Q ss_pred CCCCccceEEEEeCCeeee
Q 031790 101 VDIHSYPTFKVFYDGKEVA 119 (153)
Q Consensus 101 ~~v~~~Pt~~~~~~g~~~~ 119 (153)
..-.++.+.+.|++|+..+
T Consensus 24 h~~~g~~c~imfk~~~v~d 42 (70)
T PHA02131 24 HYRFGISCWIMFKNDQVID 42 (70)
T ss_pred ceecceEEEEEEcCCCEEE
Confidence 3446778999999998774
No 361
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=23.80 E-value=2.9e+02 Score=21.25 Aligned_cols=62 Identities=13% Similarity=0.123 Sum_probs=41.3
Q ss_pred HhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEeCCeeeeeecC-----CCCHHHHHHHHHH
Q 031790 65 KNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQG-----PRDVESLKTFVLE 136 (153)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g-----~~~~~~i~~~l~~ 136 (153)
..|..++-++.+.++. -+.|+..|.++.-.+.. .+.+.++|+.+..-++ .+..+-+..|++.
T Consensus 201 ~~mQdeLl~Lq~~l~K--TIvFitHDLdEAlriG~--------rIaimkdG~ivQ~Gtp~eIl~~PAndYV~~Fv~~ 267 (386)
T COG4175 201 TEMQDELLELQAKLKK--TIVFITHDLDEALRIGD--------RIAIMKDGEIVQVGTPEEILLNPANDYVRDFVRN 267 (386)
T ss_pred HHHHHHHHHHHHHhCC--eEEEEecCHHHHHhccc--------eEEEecCCeEEEeCCHHHHHcCccHHHHHHHHhc
Confidence 3566777788888876 79999999887766554 4778889987754332 1233445555543
No 362
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=23.64 E-value=53 Score=22.26 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=26.1
Q ss_pred hcCCCceEEeCcccHHHHhcc-CCccEEEEEEcC
Q 031790 27 IHSKSEVITLTPDTFTDKVKE-KDTAWFVKFCVP 59 (153)
Q Consensus 27 ~~~~~~~~~l~~~~~~~~~~~-~~~~vlv~f~~~ 59 (153)
..+.+.+..++.+++-+.+++ ...||+|.|-..
T Consensus 29 S~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~ 62 (180)
T PF14097_consen 29 SQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDK 62 (180)
T ss_pred eccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCC
Confidence 456778889999999998866 478999998643
No 363
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=23.55 E-value=1.7e+02 Score=24.00 Aligned_cols=69 Identities=9% Similarity=0.110 Sum_probs=43.2
Q ss_pred HHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEeCCeeeeeecCCCCHHHHHHHHHHHHHhHh
Q 031790 72 EDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFVLEEAEKAA 142 (153)
Q Consensus 72 ~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~i~~~l~~~~~~~~ 142 (153)
+.+...++. .++.+..+-..++..+.+ +++...|+.+++++|+.........+-+...+-|.+.++...
T Consensus 205 ~~~l~~l~~-~~v~vr~~~d~q~~~~~~-l~~~~~~~~llfrnG~~q~l~~~~~s~~~y~~~I~~~lg~~~ 273 (606)
T KOG1731|consen 205 ANLLNDLPS-KQVGVRARLDTQNFPLFG-LKPDNFPLALLFRNGEQQPLWPSSSSRSAYVKKIDDLLGDKN 273 (606)
T ss_pred HHHHhhccC-CCcceEEEecchhccccc-cCCCCchhhhhhcCCcccccccccccHHHHHHHHHHHhcCcc
Confidence 344444433 234444444455555555 899999999999999766555555566566666666666544
No 364
>PRK13620 psbV cytochrome c-550; Provisional
Probab=23.29 E-value=20 Score=25.02 Aligned_cols=9 Identities=22% Similarity=0.552 Sum_probs=7.9
Q ss_pred cCCChHHHh
Q 031790 58 VPWCKHCKN 66 (153)
Q Consensus 58 ~~~C~~C~~ 66 (153)
..||..|+.
T Consensus 112 ~~~Ca~CHV 120 (215)
T PRK13620 112 AYACGQCHV 120 (215)
T ss_pred HhhhhhccC
Confidence 889999983
No 365
>PRK15032 trimethylamine N-oxide reductase cytochrome c-type subunit; Provisional
Probab=23.08 E-value=1.3e+02 Score=23.39 Aligned_cols=21 Identities=14% Similarity=0.692 Sum_probs=15.2
Q ss_pred CCChHHHhHHHHHHHHHHHhc
Q 031790 59 PWCKHCKNLGSLWEDLGKAME 79 (153)
Q Consensus 59 ~~C~~C~~~~~~~~~~~~~~~ 79 (153)
.-|..|+.|.+.+++......
T Consensus 46 eFC~sCH~M~~~~~~~~~s~H 66 (390)
T PRK15032 46 EFCVSCHSMQPVYEEYKQSVH 66 (390)
T ss_pred hHhHhcCCCchHHHHHhhCcc
Confidence 368888888888777765544
No 366
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=23.00 E-value=1.8e+02 Score=21.13 Aligned_cols=33 Identities=15% Similarity=0.069 Sum_probs=23.6
Q ss_pred HHHhcCCCCeEEEEeeCCCchhhhhhCCCCccc
Q 031790 75 GKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYP 107 (153)
Q Consensus 75 ~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P 107 (153)
+..+....+..+..||+|.+..+...+|+..-|
T Consensus 21 l~~l~~~~~~~VLvVDaDpd~nL~~~LGve~~~ 53 (255)
T COG3640 21 LKRLLSKGGYNVLVVDADPDSNLPEALGVEEPM 53 (255)
T ss_pred HHHHHhcCCceEEEEeCCCCCChHHhcCCCCCC
Confidence 444433334888999999999998888876543
No 367
>PHA02935 Hypothetical protein; Provisional
Probab=22.58 E-value=1.9e+02 Score=20.27 Aligned_cols=52 Identities=15% Similarity=0.252 Sum_probs=37.8
Q ss_pred EEEeeCCCchhhhhhCCCCccceEEEEeCCeeeeeecCCCCHHHHHHHHHHH
Q 031790 86 VGEVDCGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFVLEE 137 (153)
Q Consensus 86 ~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~i~~~l~~~ 137 (153)
-+..|++.+.++|..--+..+--.-+|.+.+.+.-.+..++..-+-.|+++.
T Consensus 46 cveydvdnnvqicthavvshinytswyyndkvialatedrtsgyissfikrv 97 (349)
T PHA02935 46 CVEYDVDNNVQICTHAVVSHINYTSWYYNDKVIALATEDRTSGYISSFIKRV 97 (349)
T ss_pred eeEeeccCCeEeehhhhhhhcccceeeecCEEEEEeeccccccHHHHHHhhh
Confidence 4677888888888776665555555667888887777777777787887654
No 368
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=22.53 E-value=13 Score=18.51 Aligned_cols=11 Identities=9% Similarity=0.163 Sum_probs=8.3
Q ss_pred CCHHHHHHHHH
Q 031790 125 RDVESLKTFVL 135 (153)
Q Consensus 125 ~~~~~i~~~l~ 135 (153)
.+.+++.+|++
T Consensus 38 ~~~~~l~~~~~ 48 (49)
T TIGR01764 38 IPREDVDEYLE 48 (49)
T ss_pred EeHHHHHHHHh
Confidence 47788888875
No 369
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=22.47 E-value=2.1e+02 Score=17.99 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=19.8
Q ss_pred hhhCCCCccceEEEEeCCeeeeeecCCCCHHHHHHHH
Q 031790 98 CSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFV 134 (153)
Q Consensus 98 ~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~i~~~l 134 (153)
+-.+||+.+|.+++- ++.+ .-|..+...-...+
T Consensus 76 Aw~lgi~k~PAVVfD--~~~V--VYG~tDV~~A~~~~ 108 (114)
T PF07511_consen 76 AWSLGITKYPAVVFD--DRYV--VYGETDVARALARI 108 (114)
T ss_pred HHHhCccccCEEEEc--CCeE--EecccHHHHHHHHH
Confidence 457899999999873 3322 34555544433333
No 370
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=22.40 E-value=1.3e+02 Score=15.56 Aligned_cols=19 Identities=16% Similarity=0.239 Sum_probs=7.5
Q ss_pred CccccchhhhHHHHHHHHH
Q 031790 1 MRNHSNSSFALNLTSLVLL 19 (153)
Q Consensus 1 m~~~~~~~~~~~l~~l~~~ 19 (153)
|+..|--.....++..+++
T Consensus 1 ~kk~rwiili~iv~~Cl~l 19 (47)
T PRK10299 1 MKKFRWVVLVVVVLACLLL 19 (47)
T ss_pred CceeeehHHHHHHHHHHHH
Confidence 4444443333333333333
No 371
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=22.18 E-value=1.7e+02 Score=20.05 Aligned_cols=27 Identities=4% Similarity=-0.249 Sum_probs=20.9
Q ss_pred EEEEEcCCChHHHhHHHHHHHHHHHhc
Q 031790 53 FVKFCVPWCKHCKNLGSLWEDLGKAME 79 (153)
Q Consensus 53 lv~f~~~~C~~C~~~~~~~~~~~~~~~ 79 (153)
+-+|+..-||+|---...++++.+..+
T Consensus 3 Id~~~D~vcPwcylg~~~l~~~~~~~~ 29 (209)
T cd03021 3 IELYYDVVSPYSYLAFEVLCRYQTAWN 29 (209)
T ss_pred eEEEEeCCChHHHHHHHHHHHHHHHhC
Confidence 446677899999988888888876543
No 372
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=22.17 E-value=2.3e+02 Score=18.37 Aligned_cols=9 Identities=22% Similarity=0.626 Sum_probs=4.9
Q ss_pred CChHHHhHH
Q 031790 60 WCKHCKNLG 68 (153)
Q Consensus 60 ~C~~C~~~~ 68 (153)
-|+.|+++.
T Consensus 87 PCG~CRQ~i 95 (134)
T COG0295 87 PCGACRQVL 95 (134)
T ss_pred CcHHHHHHH
Confidence 556665543
No 373
>PRK09027 cytidine deaminase; Provisional
Probab=22.17 E-value=1.6e+02 Score=21.86 Aligned_cols=22 Identities=14% Similarity=0.220 Sum_probs=14.5
Q ss_pred ccEEEEEEcCCChHHHhHHHHH
Q 031790 50 TAWFVKFCVPWCKHCKNLGSLW 71 (153)
Q Consensus 50 ~~vlv~f~~~~C~~C~~~~~~~ 71 (153)
+..-|....+-||+|+++..++
T Consensus 118 ~i~~I~v~~sPCG~CRQ~l~E~ 139 (295)
T PRK09027 118 AIADITVNYTPCGHCRQFMNEL 139 (295)
T ss_pred ceEEEEEEecCchhhHHHHHHh
Confidence 3333334467999999986655
No 374
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.02 E-value=1.4e+02 Score=20.69 Aligned_cols=42 Identities=14% Similarity=0.163 Sum_probs=30.1
Q ss_pred CCccEEEEEEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEee
Q 031790 48 KDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVD 90 (153)
Q Consensus 48 ~~~~vlv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd 90 (153)
+...++...-.+.|--|++....+.++..-.+. .++..+.|-
T Consensus 50 ~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~-~Gv~Li~vg 91 (197)
T KOG4498|consen 50 ERSAVVAFVRRPGCVLCREEAADLASLKDLLDE-LGVVLIAVG 91 (197)
T ss_pred cCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHH-hCCEEEEEe
Confidence 455667777789999999999999888544443 455555554
No 375
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=21.77 E-value=96 Score=13.76 Aligned_cols=15 Identities=27% Similarity=0.286 Sum_probs=6.3
Q ss_pred hhHHHHHHHHHHHHH
Q 031790 9 FALNLTSLVLLLSLS 23 (153)
Q Consensus 9 ~~~~l~~l~~~~~~~ 23 (153)
+.+.++.+++++.++
T Consensus 7 mKkil~~l~a~~~La 21 (25)
T PF08139_consen 7 MKKILFPLLALFMLA 21 (25)
T ss_pred HHHHHHHHHHHHHHh
Confidence 334444444444333
No 376
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=21.61 E-value=1.5e+02 Score=16.01 Aligned_cols=58 Identities=14% Similarity=0.280 Sum_probs=30.1
Q ss_pred CCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhhCCCCccceEEEEeCCeeeeeecCCCCHHHHHHHHHH
Q 031790 59 PWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFVLE 136 (153)
Q Consensus 59 ~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~i~~~l~~ 136 (153)
++|+.|.+..-.++. .+ +.+-.++++... .-.-..+|++.. +|+.+ .+...|.+++.+
T Consensus 14 s~sp~~~~v~~~L~~-----~~---i~~~~~~~~~~~----~~p~g~vP~l~~--~g~~l------~es~~I~~yL~~ 71 (72)
T cd03054 14 SLSPECLKVETYLRM-----AG---IPYEVVFSSNPW----RSPTGKLPFLEL--NGEKI------ADSEKIIEYLKK 71 (72)
T ss_pred CCCHHHHHHHHHHHh-----CC---CceEEEecCCcc----cCCCcccCEEEE--CCEEE------cCHHHHHHHHhh
Confidence 599999887755443 22 333334433211 112346888753 45432 133666666653
No 377
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=21.54 E-value=1.7e+02 Score=16.47 Aligned_cols=67 Identities=10% Similarity=0.087 Sum_probs=34.6
Q ss_pred cCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCCchhhhhh---CCCCccceEEEEeCCeeeeeecCCCCHHHHHHHH
Q 031790 58 VPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGASKTLCSK---VDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFV 134 (153)
Q Consensus 58 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~---~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~i~~~l 134 (153)
.+||+.|.+..-.+....- .+....++..+....... -....+|++.. .+|..+ .+...|.++|
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i------~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~-~~~~~l------~eS~aI~~yL 79 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGL------EYKTVPVEFPDIPPILGELTSGGFYTVPVIVD-GSGEVI------GDSFAIAEYL 79 (84)
T ss_pred CCcCChhHHHHHHHHhCCC------CCeEEEecCCCcccccccccCCCCceeCeEEE-CCCCEE------eCHHHHHHHH
Confidence 3688899887754443311 244455554332222221 23457888743 224322 3556777777
Q ss_pred HHH
Q 031790 135 LEE 137 (153)
Q Consensus 135 ~~~ 137 (153)
.+.
T Consensus 80 ~~~ 82 (84)
T cd03038 80 EEA 82 (84)
T ss_pred HHh
Confidence 553
No 378
>KOG2990 consensus C2C2-type Zn-finger protein [Function unknown]
Probab=21.47 E-value=75 Score=23.43 Aligned_cols=22 Identities=32% Similarity=0.836 Sum_probs=15.9
Q ss_pred CCccEEEEEEcC---CChHHHhHHH
Q 031790 48 KDTAWFVKFCVP---WCKHCKNLGS 69 (153)
Q Consensus 48 ~~~~vlv~f~~~---~C~~C~~~~~ 69 (153)
+....+|-|--| ||.-|+.+..
T Consensus 39 ~~gilvIRFEMPynIWC~gC~nhIg 63 (317)
T KOG2990|consen 39 DQGILVIRFEMPYNIWCDGCKNHIG 63 (317)
T ss_pred ccceEEEEEecccchhhccHHHhhh
Confidence 345567888665 9999987654
No 379
>PF15240 Pro-rich: Proline-rich
Probab=21.45 E-value=70 Score=21.86 Aligned_cols=7 Identities=57% Similarity=0.572 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 031790 18 LLLSLSL 24 (153)
Q Consensus 18 ~~~~~~~ 24 (153)
+||++++
T Consensus 9 ALLALSS 15 (179)
T PF15240_consen 9 ALLALSS 15 (179)
T ss_pred HHHHhhh
Confidence 3333333
No 380
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=21.15 E-value=1.6e+02 Score=19.41 Aligned_cols=19 Identities=11% Similarity=-0.066 Sum_probs=9.3
Q ss_pred eeeeecCCCCHHHHHHHHH
Q 031790 117 EVAKYQGPRDVESLKTFVL 135 (153)
Q Consensus 117 ~~~~~~g~~~~~~i~~~l~ 135 (153)
...+++..+.+.++...++
T Consensus 119 vLaKc~skY~p~ev~~~~~ 137 (148)
T PRK13254 119 VLAKHDENYMPKEVADALK 137 (148)
T ss_pred EEecCCCCCCCHHHHHHHH
Confidence 3345555555555544443
No 381
>COG3592 Uncharacterized conserved protein [Function unknown]
Probab=20.82 E-value=88 Score=17.72 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=33.3
Q ss_pred eEEEEeeCCCchhhhhh--CCCCccceEEEEeCCeeeeeecCCCCHHHHHHHHH
Q 031790 84 IEVGEVDCGASKTLCSK--VDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFVL 135 (153)
Q Consensus 84 ~~~~~vd~~~~~~~~~~--~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~i~~~l~ 135 (153)
+.--+||+..+..+|.. .-|.+-|.+ |+-|+..+......+.+++.+.+.
T Consensus 11 y~Gekidi~fn~~iC~Hs~nCV~Gn~~v--F~~~rkPWI~Pd~~~ve~i~~vi~ 62 (74)
T COG3592 11 YRGEKIDIYFNTAICAHSGNCVRGNPKV--FNLGRKPWIMPDAVDVEEIVKVID 62 (74)
T ss_pred eccceEEEEeccceeecccceecCCHhh--cccCCCCccCCCCCCHHHHHHHHH
Confidence 33356666666777754 446777765 444555567777888898888875
No 382
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=20.51 E-value=1.6e+02 Score=15.75 Aligned_cols=49 Identities=12% Similarity=-0.059 Sum_probs=24.3
Q ss_pred EEcCCChHHHhHHHHHHHHHHHhcCCCCeEEEEeeCCC----chhhhhhCCCCccceEE
Q 031790 56 FCVPWCKHCKNLGSLWEDLGKAMEGDDEIEVGEVDCGA----SKTLCSKVDIHSYPTFK 110 (153)
Q Consensus 56 f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~ 110 (153)
++.+.|+.|....-.++.. + -.+....+|..+ .+++.+......+|++.
T Consensus 4 ~~~~~~~~~~~~~~~l~~~-----g-i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (73)
T cd03042 4 YSYFRSSASYRVRIALNLK-----G-LDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLV 56 (73)
T ss_pred ecCCCCcchHHHHHHHHHc-----C-CCCeEEEecCccCCcCChHHHHhCCCCCCCEEE
Confidence 3344555555544333332 2 135555666532 23444444566889885
Done!