Query 031791
Match_columns 153
No_of_seqs 144 out of 1156
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 05:23:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031791.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031791hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 100.0 6.1E-31 1.3E-35 160.6 16.9 146 6-152 10-156 (160)
2 KOG0027 Calmodulin and related 100.0 2.8E-28 6E-33 151.4 16.7 143 10-152 2-149 (151)
3 PTZ00183 centrin; Provisional 99.9 3.5E-25 7.6E-30 138.8 18.4 147 6-152 7-154 (158)
4 PTZ00184 calmodulin; Provision 99.9 6.1E-25 1.3E-29 136.4 17.6 145 8-152 3-148 (149)
5 KOG0028 Ca2+-binding protein ( 99.9 2E-24 4.3E-29 129.6 16.0 148 5-152 22-170 (172)
6 KOG0031 Myosin regulatory ligh 99.9 1.6E-23 3.4E-28 125.0 15.5 144 4-151 20-164 (171)
7 KOG0030 Myosin essential light 99.9 3.5E-22 7.6E-27 117.3 13.4 143 9-152 4-151 (152)
8 KOG0034 Ca2+/calmodulin-depend 99.9 5.1E-22 1.1E-26 125.5 14.4 141 8-152 25-175 (187)
9 KOG0044 Ca2+ sensor (EF-Hand s 99.9 1.8E-20 3.8E-25 118.6 14.1 143 7-151 20-174 (193)
10 KOG0037 Ca2+-binding protein, 99.9 1.8E-19 3.9E-24 113.9 15.6 131 15-151 56-187 (221)
11 KOG0036 Predicted mitochondria 99.8 6.4E-18 1.4E-22 115.7 15.4 138 9-151 7-145 (463)
12 PLN02964 phosphatidylserine de 99.6 1E-14 2.2E-19 107.3 14.2 105 8-116 135-243 (644)
13 KOG0027 Calmodulin and related 99.6 1.7E-13 3.7E-18 85.2 11.2 102 51-152 7-113 (151)
14 KOG4223 Reticulocalbin, calume 99.5 7.2E-14 1.6E-18 93.5 9.7 135 14-148 161-301 (325)
15 PF13499 EF-hand_7: EF-hand do 99.5 5.1E-14 1.1E-18 75.5 7.1 62 89-150 1-66 (66)
16 PTZ00183 centrin; Provisional 99.5 8.8E-13 1.9E-17 82.5 12.2 100 52-151 17-117 (158)
17 cd05022 S-100A13 S-100A13: S-1 99.5 1E-13 2.2E-18 77.9 7.0 64 88-151 8-74 (89)
18 KOG0038 Ca2+-binding kinase in 99.5 1.1E-12 2.4E-17 78.3 11.5 141 9-153 21-178 (189)
19 COG5126 FRQ1 Ca2+-binding prot 99.5 1.8E-12 3.9E-17 79.8 11.8 99 52-151 20-119 (160)
20 KOG0377 Protein serine/threoni 99.5 1.9E-12 4.2E-17 90.1 12.0 134 16-151 464-614 (631)
21 PTZ00184 calmodulin; Provision 99.5 3.2E-12 6.9E-17 79.1 11.7 100 52-151 11-111 (149)
22 cd05027 S-100B S-100B: S-100B 99.5 8.5E-13 1.8E-17 74.3 7.9 64 88-151 8-78 (88)
23 KOG0037 Ca2+-binding protein, 99.4 2.1E-11 4.5E-16 77.7 14.9 128 12-151 90-219 (221)
24 KOG0044 Ca2+ sensor (EF-Hand s 99.4 2.2E-12 4.8E-17 82.0 10.4 103 14-116 62-175 (193)
25 cd05022 S-100A13 S-100A13: S-1 99.4 1.3E-12 2.8E-17 73.5 7.5 69 12-80 4-75 (89)
26 PF13499 EF-hand_7: EF-hand do 99.4 1.2E-12 2.7E-17 70.0 7.1 62 17-78 1-66 (66)
27 cd05027 S-100B S-100B: S-100B 99.4 5.4E-12 1.2E-16 71.0 8.4 69 12-80 4-79 (88)
28 KOG2562 Protein phosphatase 2 99.4 1.4E-11 2.9E-16 86.3 10.7 140 6-148 268-420 (493)
29 KOG4223 Reticulocalbin, calume 99.4 1.8E-11 3.9E-16 82.2 10.5 139 13-151 74-227 (325)
30 cd05031 S-100A10_like S-100A10 99.4 7.4E-12 1.6E-16 71.7 7.6 65 88-152 8-79 (94)
31 smart00027 EH Eps15 homology d 99.4 1.3E-11 2.7E-16 71.0 8.6 70 9-80 3-72 (96)
32 cd05025 S-100A1 S-100A1: S-100 99.3 1E-11 2.2E-16 70.8 8.0 66 87-152 8-80 (92)
33 cd05029 S-100A6 S-100A6: S-100 99.3 1.3E-11 2.9E-16 69.4 7.7 64 88-151 10-78 (88)
34 PF13833 EF-hand_8: EF-hand do 99.3 7.1E-12 1.5E-16 64.3 6.0 52 101-152 1-53 (54)
35 cd05026 S-100Z S-100Z: S-100Z 99.3 2.2E-11 4.7E-16 69.5 8.0 64 88-151 10-80 (93)
36 PLN02964 phosphatidylserine de 99.3 5.4E-11 1.2E-15 88.0 11.4 121 30-152 118-243 (644)
37 cd00052 EH Eps15 homology doma 99.3 2.7E-11 5.8E-16 64.9 7.4 59 91-151 2-60 (67)
38 smart00027 EH Eps15 homology d 99.3 3.1E-11 6.7E-16 69.4 7.9 64 86-151 8-71 (96)
39 KOG0028 Ca2+-binding protein ( 99.3 1.3E-10 2.9E-15 70.5 10.7 101 51-151 32-133 (172)
40 KOG0040 Ca2+-binding actin-bun 99.3 1.8E-10 4E-15 90.1 13.9 142 3-152 2240-2398(2399)
41 cd00213 S-100 S-100: S-100 dom 99.3 2.9E-11 6.2E-16 68.4 7.1 66 87-152 7-79 (88)
42 cd05029 S-100A6 S-100A6: S-100 99.3 5.3E-11 1.1E-15 67.0 8.0 69 12-80 6-79 (88)
43 PF14658 EF-hand_9: EF-hand do 99.3 3.6E-11 7.7E-16 62.8 6.3 61 92-152 2-64 (66)
44 cd00051 EFh EF-hand, calcium b 99.3 7.9E-11 1.7E-15 61.8 7.8 61 90-150 2-62 (63)
45 cd05025 S-100A1 S-100A1: S-100 99.2 9.7E-11 2.1E-15 66.8 8.3 69 12-80 5-80 (92)
46 cd05026 S-100Z S-100Z: S-100Z 99.2 1.1E-10 2.3E-15 66.6 8.3 69 12-80 6-81 (93)
47 cd05031 S-100A10_like S-100A10 99.2 8.8E-11 1.9E-15 67.2 8.0 68 13-80 5-79 (94)
48 cd00213 S-100 S-100: S-100 dom 99.2 8.2E-11 1.8E-15 66.5 7.7 69 12-80 4-79 (88)
49 KOG0034 Ca2+/calmodulin-depend 99.2 2.9E-10 6.3E-15 72.3 10.2 98 19-116 69-175 (187)
50 cd05023 S-100A11 S-100A11: S-1 99.2 1.5E-10 3.3E-15 65.2 7.7 64 88-151 9-79 (89)
51 cd00052 EH Eps15 homology doma 99.2 1.6E-10 3.4E-15 61.9 7.0 60 19-80 2-61 (67)
52 KOG2643 Ca2+ binding protein, 99.2 2.5E-10 5.4E-15 79.6 8.9 133 15-152 317-453 (489)
53 PF13833 EF-hand_8: EF-hand do 99.2 1.7E-10 3.7E-15 59.1 6.2 51 29-79 1-52 (54)
54 cd00252 SPARC_EC SPARC_EC; ext 99.2 2.9E-10 6.2E-15 67.0 7.8 62 86-151 46-107 (116)
55 cd00051 EFh EF-hand, calcium b 99.1 7.1E-10 1.5E-14 58.1 7.9 61 18-78 2-62 (63)
56 cd05023 S-100A11 S-100A11: S-1 99.1 1.3E-09 2.7E-14 61.5 8.2 69 12-80 5-80 (89)
57 KOG0041 Predicted Ca2+-binding 99.1 2.7E-09 5.8E-14 67.3 8.9 106 9-114 92-201 (244)
58 KOG0036 Predicted mitochondria 99.0 1.2E-08 2.6E-13 70.9 12.2 125 14-148 49-179 (463)
59 cd05030 calgranulins Calgranul 99.0 1.9E-09 4.1E-14 60.8 6.9 64 88-151 8-78 (88)
60 cd00252 SPARC_EC SPARC_EC; ext 99.0 3.2E-09 6.8E-14 62.7 7.7 61 14-78 46-106 (116)
61 cd05030 calgranulins Calgranul 99.0 3.1E-09 6.8E-14 59.9 7.2 69 12-80 4-79 (88)
62 PF14658 EF-hand_9: EF-hand do 98.9 7.2E-09 1.6E-13 54.2 6.6 61 20-80 2-64 (66)
63 KOG4251 Calcium binding protei 98.9 1.2E-08 2.6E-13 66.6 8.6 138 13-150 98-307 (362)
64 KOG0041 Predicted Ca2+-binding 98.9 7.6E-09 1.6E-13 65.3 7.5 77 71-152 87-163 (244)
65 KOG2643 Ca2+ binding protein, 98.8 1.7E-07 3.8E-12 65.8 12.0 130 17-151 234-383 (489)
66 KOG0751 Mitochondrial aspartat 98.7 7.5E-07 1.6E-11 63.7 12.7 139 11-151 31-206 (694)
67 cd05024 S-100A10 S-100A10: A s 98.7 2.7E-07 5.8E-12 51.8 8.2 63 88-151 8-75 (91)
68 PF12763 EF-hand_4: Cytoskelet 98.7 1.8E-07 3.9E-12 54.1 7.5 69 9-80 3-71 (104)
69 PF00036 EF-hand_1: EF hand; 98.7 4.1E-08 9E-13 43.3 3.4 25 91-115 3-27 (29)
70 KOG0031 Myosin regulatory ligh 98.7 2.9E-07 6.2E-12 55.9 8.0 86 30-115 78-164 (171)
71 cd05024 S-100A10 S-100A10: A s 98.7 5.5E-07 1.2E-11 50.5 8.6 68 12-80 4-76 (91)
72 PF00036 EF-hand_1: EF hand; 98.7 4.5E-08 9.7E-13 43.2 3.3 28 125-152 1-28 (29)
73 KOG0030 Myosin essential light 98.6 1.6E-06 3.5E-11 51.9 9.9 102 50-151 9-115 (152)
74 PF13405 EF-hand_6: EF-hand do 98.5 1.4E-07 3E-12 42.4 3.4 30 89-118 1-31 (31)
75 PF12763 EF-hand_4: Cytoskelet 98.5 1.6E-06 3.4E-11 50.3 7.6 64 85-151 7-70 (104)
76 KOG2562 Protein phosphatase 2 98.4 3.3E-06 7.1E-11 60.0 9.5 133 15-150 224-377 (493)
77 KOG4666 Predicted phosphate ac 98.4 5.5E-07 1.2E-11 61.2 5.1 99 52-151 259-358 (412)
78 KOG0169 Phosphoinositide-speci 98.4 1.6E-05 3.5E-10 59.7 13.1 138 11-152 131-274 (746)
79 PRK12309 transaldolase/EF-hand 98.4 1.4E-06 3.1E-11 61.8 6.9 56 84-152 330-385 (391)
80 PF13405 EF-hand_6: EF-hand do 98.4 6.7E-07 1.4E-11 40.1 3.2 30 17-46 1-31 (31)
81 PF14788 EF-hand_10: EF hand; 98.4 2.5E-06 5.5E-11 42.2 5.4 47 105-151 2-48 (51)
82 KOG0038 Ca2+-binding kinase in 98.3 4.4E-06 9.5E-11 50.5 6.9 97 20-116 75-177 (189)
83 PF14788 EF-hand_10: EF hand; 98.3 3.6E-06 7.7E-11 41.7 5.4 47 33-79 2-48 (51)
84 KOG0751 Mitochondrial aspartat 98.3 3.6E-06 7.9E-11 60.4 7.5 60 88-147 179-239 (694)
85 KOG0040 Ca2+-binding actin-bun 98.3 2E-06 4.4E-11 68.6 6.5 65 88-152 2253-2324(2399)
86 PRK12309 transaldolase/EF-hand 98.3 6.6E-06 1.4E-10 58.5 8.2 59 46-117 328-386 (391)
87 KOG0377 Protein serine/threoni 98.3 5.8E-06 1.2E-10 58.6 7.4 65 52-116 547-615 (631)
88 PF13202 EF-hand_5: EF hand; P 98.2 1.7E-06 3.8E-11 36.7 2.8 21 92-112 3-23 (25)
89 KOG0046 Ca2+-binding actin-bun 98.2 8.5E-06 1.9E-10 58.8 7.6 78 3-81 6-86 (627)
90 PF10591 SPARC_Ca_bdg: Secrete 98.1 1.2E-06 2.6E-11 51.6 1.9 64 83-148 49-112 (113)
91 KOG1029 Endocytic adaptor prot 98.1 0.00016 3.5E-09 54.8 13.0 137 9-150 9-255 (1118)
92 PF13202 EF-hand_5: EF hand; P 98.1 5.5E-06 1.2E-10 35.1 3.2 25 126-150 1-25 (25)
93 KOG1707 Predicted Ras related/ 98.1 5E-05 1.1E-09 55.8 9.6 141 5-149 184-374 (625)
94 PF10591 SPARC_Ca_bdg: Secrete 98.0 4E-06 8.7E-11 49.4 2.0 63 48-112 50-112 (113)
95 KOG4666 Predicted phosphate ac 97.8 7.5E-05 1.6E-09 51.1 6.3 102 15-117 258-360 (412)
96 KOG4065 Uncharacterized conser 97.7 0.00044 9.5E-09 40.2 7.2 62 88-149 67-142 (144)
97 PF09279 EF-hand_like: Phospho 97.7 0.00023 5E-09 39.5 5.9 62 90-152 2-69 (83)
98 KOG4251 Calcium binding protei 97.6 0.0001 2.2E-09 48.6 4.4 66 51-116 100-168 (362)
99 KOG0046 Ca2+-binding actin-bun 97.6 0.00035 7.7E-09 50.8 7.0 63 88-151 19-84 (627)
100 PF05042 Caleosin: Caleosin re 97.5 0.0022 4.7E-08 40.3 9.0 133 16-150 7-164 (174)
101 smart00054 EFh EF-hand, calciu 97.4 0.00021 4.6E-09 30.5 2.8 25 127-151 3-27 (29)
102 smart00054 EFh EF-hand, calciu 97.3 0.00048 1E-08 29.3 3.4 27 90-116 2-28 (29)
103 PF09279 EF-hand_like: Phospho 97.3 0.0017 3.6E-08 36.1 5.9 62 18-80 2-69 (83)
104 KOG4065 Uncharacterized conser 97.2 0.0032 7E-08 36.7 6.5 68 7-76 60-141 (144)
105 KOG4347 GTPase-activating prot 96.8 0.0075 1.6E-07 45.3 7.2 104 6-110 494-612 (671)
106 PF05042 Caleosin: Caleosin re 96.8 0.0099 2.1E-07 37.5 6.6 33 121-153 93-125 (174)
107 KOG0035 Ca2+-binding actin-bun 96.7 0.019 4.1E-07 45.0 8.8 107 5-112 736-848 (890)
108 KOG1955 Ral-GTPase effector RA 96.6 0.0084 1.8E-07 43.8 5.9 62 88-151 231-292 (737)
109 PLN02952 phosphoinositide phos 96.5 0.059 1.3E-06 40.9 9.9 84 67-151 15-109 (599)
110 KOG0042 Glycerol-3-phosphate d 96.4 0.014 3E-07 43.4 6.3 79 4-82 581-659 (680)
111 PF09069 EF-hand_3: EF-hand; 96.4 0.069 1.5E-06 30.1 7.8 63 87-152 2-75 (90)
112 KOG3555 Ca2+-binding proteogly 96.2 0.014 2.9E-07 40.8 5.0 61 86-150 248-308 (434)
113 KOG3555 Ca2+-binding proteogly 96.2 0.013 2.9E-07 40.8 4.9 109 16-129 211-322 (434)
114 KOG0169 Phosphoinositide-speci 96.1 0.082 1.8E-06 40.8 9.0 97 51-151 135-231 (746)
115 KOG1955 Ral-GTPase effector RA 96.1 0.031 6.7E-07 41.0 6.3 70 9-80 224-293 (737)
116 KOG1265 Phospholipase C [Lipid 96.0 0.3 6.6E-06 38.7 11.3 121 26-152 158-299 (1189)
117 PF05517 p25-alpha: p25-alpha 95.9 0.1 2.2E-06 32.7 7.4 62 19-80 5-69 (154)
118 KOG4578 Uncharacterized conser 95.5 0.0093 2E-07 41.3 2.0 67 14-80 331-398 (421)
119 KOG0998 Synaptic vesicle prote 95.4 0.028 6E-07 44.5 4.4 62 87-150 282-343 (847)
120 PF05517 p25-alpha: p25-alpha 95.3 0.15 3.2E-06 31.9 6.7 52 100-151 14-68 (154)
121 KOG4578 Uncharacterized conser 95.3 0.0093 2E-07 41.3 1.4 62 88-151 333-397 (421)
122 KOG2243 Ca2+ release channel ( 95.0 0.063 1.4E-06 44.5 5.2 58 93-151 4062-4119(5019)
123 KOG1029 Endocytic adaptor prot 94.8 0.076 1.6E-06 41.2 5.0 67 11-79 190-256 (1118)
124 KOG0042 Glycerol-3-phosphate d 94.8 0.087 1.9E-06 39.5 5.1 64 88-151 593-656 (680)
125 KOG2243 Ca2+ release channel ( 94.3 0.1 2.2E-06 43.4 4.9 57 21-78 4062-4118(5019)
126 KOG4347 GTPase-activating prot 93.8 0.16 3.4E-06 38.6 4.8 76 69-145 535-611 (671)
127 KOG3866 DNA-binding protein of 93.3 0.2 4.3E-06 34.8 4.3 58 92-149 248-321 (442)
128 KOG0035 Ca2+-binding actin-bun 93.2 0.36 7.7E-06 38.3 6.0 65 88-152 747-816 (890)
129 PLN02952 phosphoinositide phos 93.1 2.3 5E-05 32.8 10.0 87 29-116 13-110 (599)
130 KOG1707 Predicted Ras related/ 93.0 0.34 7.4E-06 36.6 5.5 90 6-101 305-399 (625)
131 KOG4286 Dystrophin-like protei 91.3 1.7 3.7E-05 34.1 7.4 134 15-151 419-579 (966)
132 KOG3866 DNA-binding protein of 89.9 1.1 2.4E-05 31.3 5.0 90 21-116 249-354 (442)
133 KOG0998 Synaptic vesicle prote 89.3 0.22 4.8E-06 39.7 1.6 69 9-79 276-344 (847)
134 KOG1264 Phospholipase C [Lipid 89.1 3.9 8.4E-05 32.8 7.8 143 8-151 135-292 (1267)
135 TIGR01848 PHA_reg_PhaR polyhyd 89.0 1.9 4E-05 25.1 4.8 20 61-80 12-31 (107)
136 PF14513 DAG_kinase_N: Diacylg 88.5 1.9 4E-05 26.5 4.9 70 30-101 5-82 (138)
137 PLN02228 Phosphoinositide phos 88.0 5.9 0.00013 30.4 8.1 29 50-80 22-50 (567)
138 PLN02230 phosphoinositide phos 87.7 6.2 0.00013 30.5 8.1 65 87-152 28-102 (598)
139 PLN02222 phosphoinositide phos 87.6 4.3 9.3E-05 31.2 7.2 61 89-151 26-89 (581)
140 PF08414 NADPH_Ox: Respiratory 87.6 1.9 4.1E-05 24.7 4.2 49 66-117 42-93 (100)
141 PF08976 DUF1880: Domain of un 87.4 0.75 1.6E-05 27.2 2.6 32 49-80 4-35 (118)
142 cd07313 terB_like_2 tellurium 86.9 4.2 9E-05 23.3 6.5 82 30-113 13-97 (104)
143 PF08726 EFhand_Ca_insen: Ca2+ 86.2 1.1 2.4E-05 24.0 2.6 56 87-150 5-67 (69)
144 KOG2871 Uncharacterized conser 86.0 0.94 2E-05 32.4 2.9 65 15-79 308-373 (449)
145 KOG2301 Voltage-gated Ca2+ cha 85.8 3 6.6E-05 35.9 6.1 71 9-80 1410-1484(1592)
146 PF12174 RST: RCD1-SRO-TAF4 (R 85.0 1.2 2.6E-05 23.9 2.4 60 67-132 7-66 (70)
147 PF11116 DUF2624: Protein of u 84.1 5.5 0.00012 22.2 6.2 52 67-118 13-64 (85)
148 PF01023 S_100: S-100/ICaBP ty 83.8 3.2 6.9E-05 19.9 3.4 32 13-44 3-36 (44)
149 PF11116 DUF2624: Protein of u 83.4 6 0.00013 22.1 7.2 66 32-97 14-82 (85)
150 KOG0039 Ferric reductase, NADH 83.3 4.4 9.5E-05 31.7 5.7 76 69-150 4-87 (646)
151 KOG2871 Uncharacterized conser 82.8 1.2 2.6E-05 31.9 2.3 61 86-146 307-368 (449)
152 PF09069 EF-hand_3: EF-hand; 82.6 6.7 0.00015 22.2 7.6 63 16-81 3-76 (90)
153 KOG1265 Phospholipase C [Lipid 82.0 27 0.00058 28.7 9.4 80 34-116 206-299 (1189)
154 PF07308 DUF1456: Protein of u 80.7 6.7 0.00015 20.9 4.8 40 33-72 14-53 (68)
155 PF07879 PHB_acc_N: PHB/PHA ac 79.4 4.9 0.00011 21.0 3.3 22 95-116 10-31 (64)
156 PLN02223 phosphoinositide phos 78.4 22 0.00047 27.3 7.6 65 87-152 15-92 (537)
157 PLN02228 Phosphoinositide phos 78.3 21 0.00045 27.7 7.6 66 8-78 19-90 (567)
158 PLN02222 phosphoinositide phos 77.2 19 0.00042 27.9 7.2 66 10-80 22-90 (581)
159 PF02761 Cbl_N2: CBL proto-onc 76.9 11 0.00023 21.1 5.8 66 51-117 6-71 (85)
160 cd07313 terB_like_2 tellurium 76.1 6.9 0.00015 22.4 3.9 74 66-145 13-93 (104)
161 PF14513 DAG_kinase_N: Diacylg 75.7 4.3 9.4E-05 25.0 3.0 48 102-151 5-59 (138)
162 PF03672 UPF0154: Uncharacteri 74.9 10 0.00022 19.9 4.1 32 102-133 29-60 (64)
163 PF00404 Dockerin_1: Dockerin 74.7 4.8 0.0001 16.0 2.6 16 26-41 1-16 (21)
164 KOG4004 Matricellular protein 74.5 1.2 2.5E-05 29.1 0.3 55 94-150 193-248 (259)
165 KOG4004 Matricellular protein 73.4 2.3 5E-05 27.8 1.4 47 66-114 202-248 (259)
166 PF07308 DUF1456: Protein of u 72.2 13 0.00028 19.8 4.9 30 105-134 14-43 (68)
167 PF12174 RST: RCD1-SRO-TAF4 (R 72.1 13 0.00029 19.9 5.3 33 48-80 21-53 (70)
168 PF08414 NADPH_Ox: Respiratory 71.0 18 0.00038 20.9 6.0 61 14-79 28-91 (100)
169 KOG3449 60S acidic ribosomal p 70.2 20 0.00042 21.1 5.7 44 91-134 4-47 (112)
170 PRK00523 hypothetical protein; 69.0 16 0.00035 19.7 4.1 32 102-133 37-68 (72)
171 PLN02230 phosphoinositide phos 65.2 55 0.0012 25.7 7.3 64 16-80 29-102 (598)
172 COG3763 Uncharacterized protei 64.6 20 0.00044 19.2 4.0 32 102-133 36-67 (71)
173 KOG4301 Beta-dystrobrevin [Cyt 64.5 29 0.00064 24.9 5.3 62 55-117 113-174 (434)
174 TIGR03573 WbuX N-acetyl sugar 64.1 29 0.00062 25.0 5.5 43 102-150 300-342 (343)
175 PF04558 tRNA_synt_1c_R1: Glut 63.6 36 0.00078 21.7 6.0 64 69-133 66-129 (164)
176 TIGR01639 P_fal_TIGR01639 Plas 63.5 19 0.00042 18.6 4.1 31 31-61 8-38 (61)
177 PF03979 Sigma70_r1_1: Sigma-7 63.5 12 0.00025 20.6 2.8 30 102-133 19-48 (82)
178 PF05099 TerB: Tellurite resis 63.1 17 0.00036 22.0 3.8 80 29-110 36-118 (140)
179 KOG3077 Uncharacterized conser 62.6 49 0.0011 22.9 12.1 67 14-80 62-129 (260)
180 PF09068 EF-hand_2: EF hand; 62.6 32 0.0007 20.8 7.4 28 89-116 98-125 (127)
181 PF12419 DUF3670: SNF2 Helicas 61.4 32 0.00069 21.2 4.7 49 101-149 80-138 (141)
182 PTZ00373 60S Acidic ribosomal 60.6 33 0.00072 20.3 5.8 44 91-134 6-49 (112)
183 PRK01844 hypothetical protein; 60.5 25 0.00055 18.9 4.1 31 103-133 37-67 (72)
184 KOG0506 Glutaminase (contains 60.0 43 0.00093 25.4 5.7 63 89-151 87-157 (622)
185 PF02761 Cbl_N2: CBL proto-onc 59.9 29 0.00063 19.4 6.2 51 30-80 20-70 (85)
186 PF01885 PTS_2-RNA: RNA 2'-pho 59.9 22 0.00048 23.1 4.0 37 98-134 26-62 (186)
187 COG2818 Tag 3-methyladenine DN 59.7 3 6.5E-05 26.9 -0.0 43 86-128 53-95 (188)
188 COG4103 Uncharacterized protei 58.3 28 0.0006 21.6 3.9 12 104-115 82-93 (148)
189 PLN02223 phosphoinositide phos 58.3 85 0.0018 24.3 7.1 64 16-80 16-92 (537)
190 PRK00819 RNA 2'-phosphotransfe 56.9 31 0.00068 22.3 4.2 32 100-131 29-60 (179)
191 PF09336 Vps4_C: Vps4 C termin 56.5 20 0.00042 18.7 2.7 25 104-128 29-53 (62)
192 COG4103 Uncharacterized protei 56.3 47 0.001 20.7 7.0 93 20-116 34-129 (148)
193 cd07176 terB tellurite resista 56.2 31 0.00068 19.7 4.0 79 30-111 16-100 (111)
194 cd07316 terB_like_DjlA N-termi 55.3 37 0.00081 19.3 8.0 81 30-112 13-97 (106)
195 KOG1954 Endocytosis/signaling 52.6 36 0.00079 25.1 4.3 26 49-74 474-499 (532)
196 PRK09430 djlA Dna-J like membr 51.8 78 0.0017 21.9 10.3 98 28-132 67-174 (267)
197 PF08044 DUF1707: Domain of un 51.7 31 0.00068 17.3 3.1 30 101-130 20-49 (53)
198 PHA02105 hypothetical protein 51.1 34 0.00073 17.5 3.4 48 32-79 4-56 (68)
199 cd05833 Ribosomal_P2 Ribosomal 50.4 52 0.0011 19.4 5.8 43 92-134 5-47 (109)
200 KOG2557 Uncharacterized conser 49.9 1E+02 0.0022 22.7 8.9 52 66-117 72-123 (427)
201 PF08461 HTH_12: Ribonuclease 49.6 39 0.00084 17.8 3.5 37 101-137 10-46 (66)
202 TIGR02787 codY_Gpos GTP-sensin 49.4 84 0.0018 21.6 5.6 49 8-62 175-223 (251)
203 COG4359 Uncharacterized conser 49.2 75 0.0016 21.0 5.9 13 30-42 11-23 (220)
204 KOG4301 Beta-dystrobrevin [Cyt 48.9 40 0.00087 24.3 4.0 61 90-151 112-172 (434)
205 PF04157 EAP30: EAP30/Vps36 fa 47.7 83 0.0018 21.0 7.2 111 16-132 97-213 (223)
206 CHL00185 ycf59 magnesium-proto 47.2 73 0.0016 22.9 5.0 72 44-115 33-106 (351)
207 KOG4070 Putative signal transd 47.1 72 0.0016 20.1 5.5 79 20-98 19-108 (180)
208 PF00427 PBS_linker_poly: Phyc 46.8 67 0.0014 19.7 4.9 49 66-116 42-98 (131)
209 PF09373 PMBR: Pseudomurein-bi 46.2 21 0.00045 15.8 1.6 12 139-150 3-14 (33)
210 TIGR00624 tag DNA-3-methyladen 46.2 81 0.0018 20.5 5.8 102 15-119 52-168 (179)
211 PRK13654 magnesium-protoporphy 45.9 75 0.0016 22.9 4.9 87 44-135 37-125 (355)
212 PRK14981 DNA-directed RNA poly 45.9 61 0.0013 19.1 4.0 27 107-133 81-107 (112)
213 TIGR00135 gatC glutamyl-tRNA(G 45.9 55 0.0012 18.4 4.1 26 105-130 1-26 (93)
214 TIGR02029 AcsF magnesium-proto 45.2 76 0.0016 22.7 4.8 72 44-115 27-100 (337)
215 COG5562 Phage envelope protein 44.8 22 0.00047 21.8 2.0 22 131-152 79-100 (137)
216 KOG1785 Tyrosine kinase negati 44.5 1.3E+02 0.0028 22.4 7.7 86 29-117 187-275 (563)
217 TIGR02675 tape_meas_nterm tape 43.5 35 0.00076 18.5 2.6 13 66-78 28-40 (75)
218 PF07128 DUF1380: Protein of u 42.7 82 0.0018 19.5 5.1 32 104-135 26-57 (139)
219 COG1460 Uncharacterized protei 42.6 74 0.0016 19.0 3.9 30 105-134 80-109 (114)
220 cd01047 ACSF Aerobic Cyclase S 42.4 1.1E+02 0.0024 21.8 5.2 71 45-115 18-90 (323)
221 cd03035 ArsC_Yffb Arsenate Red 41.8 29 0.00063 20.1 2.2 13 105-117 36-48 (105)
222 TIGR02574 stabl_TIGR02574 puta 41.6 53 0.0011 17.0 4.7 19 10-28 3-22 (63)
223 PF07862 Nif11: Nitrogen fixat 41.4 42 0.00092 16.2 2.5 21 34-54 28-48 (49)
224 PF13623 SurA_N_2: SurA N-term 40.8 84 0.0018 19.6 4.2 41 110-150 95-145 (145)
225 PRK09430 djlA Dna-J like membr 40.3 1.1E+02 0.0023 21.3 5.1 25 93-117 97-121 (267)
226 PRK04387 hypothetical protein; 39.7 73 0.0016 18.1 3.7 62 10-72 11-73 (90)
227 PF08349 DUF1722: Protein of u 39.2 83 0.0018 18.6 5.4 31 120-150 65-95 (117)
228 KOG0039 Ferric reductase, NADH 38.8 1.2E+02 0.0025 24.2 5.6 25 91-115 64-88 (646)
229 PF09107 SelB-wing_3: Elongati 38.7 53 0.0012 16.2 3.0 29 102-135 8-36 (50)
230 TIGR00624 tag DNA-3-methyladen 38.2 9.2 0.0002 24.7 -0.3 44 87-130 52-95 (179)
231 cd07894 Adenylation_RNA_ligase 38.1 1.6E+02 0.0034 21.4 6.7 97 26-122 135-244 (342)
232 COG2818 Tag 3-methyladenine DN 37.8 35 0.00076 22.3 2.2 44 15-58 54-97 (188)
233 PLN00138 large subunit ribosom 37.6 90 0.002 18.6 5.8 42 93-134 6-47 (113)
234 cd00086 homeodomain Homeodomai 37.0 56 0.0012 16.0 6.7 47 6-59 3-49 (59)
235 PF10437 Lip_prot_lig_C: Bacte 37.0 75 0.0016 17.4 4.5 42 107-150 44-86 (86)
236 PF01885 PTS_2-RNA: RNA 2'-pho 36.5 76 0.0016 20.7 3.7 36 26-61 26-61 (186)
237 KOG1954 Endocytosis/signaling 35.8 72 0.0016 23.7 3.7 56 90-148 446-501 (532)
238 KOG4403 Cell surface glycoprot 35.8 1.4E+02 0.0031 22.5 5.2 23 52-74 68-90 (575)
239 PF08672 APC2: Anaphase promot 35.3 69 0.0015 16.5 3.3 29 87-116 14-44 (60)
240 KOG2301 Voltage-gated Ca2+ cha 35.3 44 0.00095 29.5 3.0 37 84-120 1413-1449(1592)
241 PF07499 RuvA_C: RuvA, C-termi 35.0 59 0.0013 15.6 5.0 38 108-149 4-41 (47)
242 PF05872 DUF853: Bacterial pro 34.9 92 0.002 23.8 4.2 38 9-46 121-158 (502)
243 TIGR01565 homeo_ZF_HD homeobox 34.9 70 0.0015 16.4 5.2 39 5-48 3-45 (58)
244 PF01325 Fe_dep_repress: Iron 34.5 70 0.0015 16.4 5.4 53 10-71 2-54 (60)
245 PRK10945 gene expression modul 34.2 81 0.0018 17.0 3.8 44 69-119 6-49 (72)
246 PRK00034 gatC aspartyl/glutamy 34.0 91 0.002 17.5 4.2 26 105-130 3-28 (95)
247 PRK10353 3-methyl-adenine DNA 33.8 8.5 0.00018 25.0 -0.9 44 87-130 53-96 (187)
248 PRK00819 RNA 2'-phosphotransfe 33.7 1.2E+02 0.0026 19.7 4.2 43 27-72 28-70 (179)
249 COG2344 AT-rich DNA-binding pr 33.5 1.5E+02 0.0032 19.7 4.8 44 15-63 15-58 (211)
250 PF12631 GTPase_Cys_C: Catalyt 33.4 73 0.0016 17.0 2.8 44 90-133 25-72 (73)
251 cd04411 Ribosomal_P1_P2_L12p R 32.8 1.1E+02 0.0023 18.0 6.3 29 105-133 17-45 (105)
252 TIGR03573 WbuX N-acetyl sugar 32.5 1.7E+02 0.0038 21.1 5.3 66 37-114 275-342 (343)
253 PRK10391 oriC-binding nucleoid 32.4 87 0.0019 16.8 3.1 10 88-97 17-26 (71)
254 PLN02508 magnesium-protoporphy 32.1 2E+02 0.0043 20.9 5.7 86 46-136 35-122 (357)
255 PF08671 SinI: Anti-repressor 32.1 54 0.0012 14.3 1.7 11 105-115 17-27 (30)
256 smart00513 SAP Putative DNA-bi 31.8 56 0.0012 14.5 2.6 17 104-120 3-19 (35)
257 PF13099 DUF3944: Domain of un 31.4 61 0.0013 14.8 2.2 16 88-103 16-31 (35)
258 PF06648 DUF1160: Protein of u 30.0 1.3E+02 0.0029 18.2 5.7 14 104-117 67-80 (122)
259 PF02459 Adeno_terminal: Adeno 29.7 1.1E+02 0.0023 23.7 3.9 54 10-63 449-502 (548)
260 PF05256 UPF0223: Uncharacteri 28.8 76 0.0016 18.0 2.4 62 10-72 11-73 (88)
261 KOG0506 Glutaminase (contains 28.8 2.8E+02 0.006 21.5 7.5 59 21-79 91-157 (622)
262 PHA02771 hypothetical protein; 28.4 1.2E+02 0.0026 17.2 4.1 8 123-130 34-41 (90)
263 PF08100 Dimerisation: Dimeris 28.3 22 0.00048 17.7 0.2 13 30-42 20-32 (51)
264 COG0721 GatC Asp-tRNAAsn/Glu-t 28.3 1.2E+02 0.0027 17.3 4.1 27 104-130 2-28 (96)
265 PF11020 DUF2610: Domain of un 28.0 78 0.0017 17.5 2.2 30 120-149 45-74 (82)
266 PF09312 SurA_N: SurA N-termin 27.9 1.3E+02 0.0028 17.7 3.5 11 141-151 99-109 (118)
267 KOG2303 Predicted NAD synthase 27.6 3E+02 0.0065 21.5 7.6 25 106-130 612-636 (706)
268 COG4476 Uncharacterized protei 27.5 1.2E+02 0.0026 17.0 3.3 54 11-64 12-66 (90)
269 PF02037 SAP: SAP domain; Int 27.4 71 0.0015 14.2 2.2 17 104-120 3-19 (35)
270 TIGR03798 ocin_TIGR03798 bacte 27.3 1E+02 0.0022 15.9 3.3 25 105-129 25-49 (64)
271 cd08313 Death_TNFR1 Death doma 27.2 1.2E+02 0.0026 16.7 3.3 45 105-151 9-68 (80)
272 PRK13654 magnesium-protoporphy 27.1 81 0.0018 22.8 2.8 90 12-107 44-136 (355)
273 cd07177 terB_like tellurium re 26.9 1.2E+02 0.0026 16.7 6.9 16 30-45 13-28 (104)
274 PF00046 Homeobox: Homeobox do 26.1 94 0.002 15.2 6.1 46 6-58 3-48 (57)
275 PF00690 Cation_ATPase_N: Cati 26.0 1.1E+02 0.0024 15.9 3.9 30 91-120 7-36 (69)
276 PF13373 DUF2407_C: DUF2407 C- 25.6 72 0.0016 19.8 2.1 20 7-26 8-27 (140)
277 KOG4286 Dystrophin-like protei 25.4 1E+02 0.0022 25.1 3.2 50 88-137 470-519 (966)
278 cd07357 HN_L-whirlin_R2_like S 25.4 95 0.0021 17.2 2.3 30 121-150 16-45 (81)
279 PF05321 HHA: Haemolysin expre 25.3 81 0.0018 16.2 1.9 27 107-133 9-35 (57)
280 PF13075 DUF3939: Protein of u 25.2 16 0.00035 22.4 -0.7 13 101-113 38-50 (140)
281 PRK06402 rpl12p 50S ribosomal 25.2 1.6E+02 0.0034 17.4 6.0 31 104-134 16-46 (106)
282 PF14473 RD3: RD3 protein 25.1 1.8E+02 0.0038 18.0 5.1 54 5-61 67-120 (133)
283 PF06569 DUF1128: Protein of u 25.0 1.3E+02 0.0027 16.3 3.4 8 15-22 13-20 (71)
284 PF03874 RNA_pol_Rpb4: RNA pol 24.9 98 0.0021 18.1 2.6 11 105-115 71-81 (117)
285 COG1321 TroR Mn-dependent tran 24.9 1.9E+02 0.0041 18.2 5.9 112 9-134 3-121 (154)
286 PF11363 DUF3164: Protein of u 24.9 2.1E+02 0.0046 18.9 5.5 44 87-133 118-161 (195)
287 PF12486 DUF3702: ImpA domain 24.8 1.6E+02 0.0034 18.5 3.5 27 16-42 69-95 (148)
288 PF06384 ICAT: Beta-catenin-in 24.5 1.3E+02 0.0028 16.6 2.7 22 37-58 21-42 (78)
289 PF09851 SHOCT: Short C-termin 24.2 79 0.0017 13.7 4.0 14 30-43 14-27 (31)
290 PF02337 Gag_p10: Retroviral G 23.7 1.4E+02 0.0031 16.9 2.9 13 135-147 68-80 (90)
291 PHA02681 ORF089 virion membran 23.6 1.4E+02 0.0029 16.7 2.7 25 6-31 48-72 (92)
292 KOG4629 Predicted mechanosensi 23.5 2.1E+02 0.0045 23.3 4.6 56 89-151 405-460 (714)
293 KOG2419 Phosphatidylserine dec 23.3 96 0.0021 24.8 2.8 63 89-151 438-532 (975)
294 PF03250 Tropomodulin: Tropomo 23.0 89 0.0019 19.6 2.1 22 8-29 22-43 (147)
295 PF04361 DUF494: Protein of un 23.0 2.1E+02 0.0045 18.1 5.7 42 89-132 4-46 (155)
296 KOG3442 Uncharacterized conser 22.7 1.9E+02 0.0042 17.6 3.5 38 67-105 54-95 (132)
297 cd08032 LARP_7 La RNA-binding 22.2 1.3E+02 0.0028 16.7 2.5 24 92-115 27-50 (82)
298 PF13551 HTH_29: Winged helix- 22.1 1.6E+02 0.0035 16.6 6.8 51 10-60 58-110 (112)
299 PF11829 DUF3349: Protein of u 22.0 1.7E+02 0.0038 16.8 3.4 65 69-133 20-85 (96)
300 PF10281 Ish1: Putative stress 22.0 99 0.0022 14.0 3.7 14 106-119 5-18 (38)
301 PF14848 HU-DNA_bdg: DNA-bindi 22.0 1.9E+02 0.0042 17.3 4.4 32 102-133 26-57 (124)
302 KOG4718 Non-SMC (structural ma 21.8 2.6E+02 0.0057 18.9 4.9 58 6-63 89-148 (235)
303 TIGR01209 RNA ligase, Pab1020 21.7 3.4E+02 0.0075 20.1 7.0 104 22-125 163-280 (374)
304 PF03556 Cullin_binding: Culli 21.6 1.9E+02 0.0042 17.2 4.6 82 64-151 36-117 (117)
305 PF09454 Vps23_core: Vps23 cor 21.6 80 0.0017 16.6 1.6 14 138-151 37-50 (65)
306 TIGR02613 mob_myst_B mobile my 21.6 2.4E+02 0.0052 18.3 4.1 21 99-119 126-146 (186)
307 COG1859 KptA RNA:NAD 2'-phosph 21.5 2.3E+02 0.005 19.0 3.9 35 99-133 54-88 (211)
308 KOG1264 Phospholipase C [Lipid 21.4 5E+02 0.011 21.9 7.1 86 65-151 157-248 (1267)
309 PF03352 Adenine_glyco: Methyl 21.4 6.8 0.00015 25.3 -3.0 44 87-130 48-91 (179)
310 PF04963 Sigma54_CBD: Sigma-54 21.0 1.9E+02 0.004 18.9 3.5 51 27-80 45-98 (194)
311 PF06226 DUF1007: Protein of u 20.9 1.5E+02 0.0032 19.7 3.1 25 93-117 55-79 (212)
312 PRK10026 arsenate reductase; P 20.8 1.7E+02 0.0036 18.2 3.1 14 105-118 39-52 (141)
313 KOG4629 Predicted mechanosensi 20.7 3.2E+02 0.0068 22.3 5.1 56 55-117 407-462 (714)
314 PF09066 B2-adapt-app_C: Beta2 20.5 94 0.002 18.1 1.9 18 101-118 3-20 (114)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=100.00 E-value=6.1e-31 Score=160.64 Aligned_cols=146 Identities=38% Similarity=0.667 Sum_probs=137.7
Q ss_pred CCCCCChhhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhcC-CCC
Q 031791 6 SNGANYLGSMDEVRKVFNKFDKNGDGKISADELKDVLRSLGSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLAG-GST 84 (153)
Q Consensus 6 ~~~~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~-~~~ 84 (153)
...++++++++.++..|..+|++++|.|++.+|..+++.+|..++.+++..++..++. +.+.|+|.+|+.++... ...
T Consensus 10 ~~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~ 88 (160)
T COG5126 10 TFTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRG 88 (160)
T ss_pred hcccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccC
Confidence 4568999999999999999999999999999999999999999999999999999998 78899999999999884 466
Q ss_pred chHHHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHhhc
Q 031791 85 DGTKELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKVDADGDGHVNFEEFKKMMTR 152 (153)
Q Consensus 85 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 152 (153)
...+++..+|+.||.+++|+|+..+++.++..+|..+++++++.++..++.+++|.|+|++|.+.+..
T Consensus 89 ~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 89 DKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred CcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 66799999999999999999999999999999999999999999999999999999999999998754
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.97 E-value=2.8e-28 Score=151.43 Aligned_cols=143 Identities=50% Similarity=0.803 Sum_probs=133.3
Q ss_pred CChhhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhcCCCCc----
Q 031791 10 NYLGSMDEVRKVFNKFDKNGDGKISADELKDVLRSLGSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLAGGSTD---- 85 (153)
Q Consensus 10 ~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~---- 85 (153)
++..++..++.+|..+|.+++|.|+..++..+++.+|..++..++..++..+|.+++|.|++.+|+.++.......
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~ 81 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEE 81 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccc
Confidence 5778899999999999999999999999999999999999999999999999999999999999999988733221
Q ss_pred -hHHHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHhhc
Q 031791 86 -GTKELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKVDADGDGHVNFEEFKKMMTR 152 (153)
Q Consensus 86 -~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 152 (153)
..+.+..+|+.||.+++|+|+..||++++..+|...+.+++..++..+|.+++|.|+|++|+.++..
T Consensus 82 ~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 82 ASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred ccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 2458999999999999999999999999999999999999999999999999999999999999865
No 3
>PTZ00183 centrin; Provisional
Probab=99.95 E-value=3.5e-25 Score=138.76 Aligned_cols=147 Identities=37% Similarity=0.620 Sum_probs=134.5
Q ss_pred CCCCCChhhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhcC-CCC
Q 031791 6 SNGANYLGSMDEVRKVFNKFDKNGDGKISADELKDVLRSLGSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLAG-GST 84 (153)
Q Consensus 6 ~~~~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~-~~~ 84 (153)
...++++.+++.+..+|..+|++++|.|+..+|..++..+|..++...+..++..+|.+++|.|++.+|+..+... ...
T Consensus 7 ~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~ 86 (158)
T PTZ00183 7 ERPGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGER 86 (158)
T ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCC
Confidence 4567899999999999999999999999999999999999988889999999999999999999999999887652 233
Q ss_pred chHHHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHhhc
Q 031791 85 DGTKELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKVDADGDGHVNFEEFKKMMTR 152 (153)
Q Consensus 85 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 152 (153)
.....+..+|..+|.+++|.|+..||..++..++..+++.++..++..+|.+++|.|++++|..++.+
T Consensus 87 ~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 87 DPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred CcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 44578999999999999999999999999999999999999999999999999999999999998864
No 4
>PTZ00184 calmodulin; Provisional
Probab=99.94 E-value=6.1e-25 Score=136.35 Aligned_cols=145 Identities=43% Similarity=0.732 Sum_probs=132.6
Q ss_pred CCCChhhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhcC-CCCch
Q 031791 8 GANYLGSMDEVRKVFNKFDKNGDGKISADELKDVLRSLGSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLAG-GSTDG 86 (153)
Q Consensus 8 ~~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~-~~~~~ 86 (153)
..+++.+++.+...|..+|.+++|.|+..+|..++..++..++...+..++..++.+++|.|++++|+.++... .....
T Consensus 3 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~ 82 (149)
T PTZ00184 3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDS 82 (149)
T ss_pred CccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcH
Confidence 45789999999999999999999999999999999999888889999999999999999999999999988753 22344
Q ss_pred HHHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHhhc
Q 031791 87 TKELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKVDADGDGHVNFEEFKKMMTR 152 (153)
Q Consensus 87 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 152 (153)
...+..+|..+|.+++|.|+.+++..++..++..++..++..++..+|.+++|.|+|++|..++..
T Consensus 83 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 83 EEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred HHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHhc
Confidence 567899999999999999999999999999999899999999999999999999999999988763
No 5
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=2e-24 Score=129.61 Aligned_cols=148 Identities=35% Similarity=0.605 Sum_probs=137.6
Q ss_pred CCCCCCChhhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhc-CCC
Q 031791 5 NSNGANYLGSMDEVRKVFNKFDKNGDGKISADELKDVLRSLGSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLA-GGS 83 (153)
Q Consensus 5 ~~~~~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~-~~~ 83 (153)
.+...+++.+.+.++..|..+|++++|+|+.++|.-.++++|+.+...++..++..+|.++.|.|++++|+..+.. ...
T Consensus 22 ~~~~~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e 101 (172)
T KOG0028|consen 22 SPKSELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGE 101 (172)
T ss_pred CCCccccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhc
Confidence 4667888999999999999999999999999999999999999999999999999999999999999999998655 333
Q ss_pred CchHHHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHhhc
Q 031791 84 TDGTKELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKVDADGDGHVNFEEFKKMMTR 152 (153)
Q Consensus 84 ~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 152 (153)
....+.+..+|+.+|.|++|.|+..+|+.+...+|.+++++++.+++..+|.+++|.|+-++|..++++
T Consensus 102 ~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 102 RDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred cCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 446799999999999999999999999999999999999999999999999999999999999998864
No 6
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.92 E-value=1.6e-23 Score=124.97 Aligned_cols=144 Identities=28% Similarity=0.465 Sum_probs=132.3
Q ss_pred CCCCCCCChhhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhc-CC
Q 031791 4 NNSNGANYLGSMDEVRKVFNKFDKNGDGKISADELKDVLRSLGSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLA-GG 82 (153)
Q Consensus 4 ~~~~~~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~-~~ 82 (153)
++.-+.|++.+|+.+++.|..+|.+++|.|+.+++..++..+|..++.+++..++.. ..|.|+|.-|+.++.. +.
T Consensus 20 SnvFamf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~E----a~gPINft~FLTmfGekL~ 95 (171)
T KOG0031|consen 20 SNVFAMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKE----APGPINFTVFLTMFGEKLN 95 (171)
T ss_pred chHHHHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh----CCCCeeHHHHHHHHHHHhc
Confidence 344456889999999999999999999999999999999999999999999999875 4688999999999877 45
Q ss_pred CCchHHHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHhh
Q 031791 83 STDGTKELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKVDADGDGHVNFEEFKKMMT 151 (153)
Q Consensus 83 ~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 151 (153)
...+.+.+..+|..||.+++|.|..+.++.+|...|.+.++++++.++..+-.+..|.|+|..|+.++.
T Consensus 96 gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 96 GTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred CCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 556678899999999999999999999999999999999999999999999999999999999999886
No 7
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.90 E-value=3.5e-22 Score=117.30 Aligned_cols=143 Identities=30% Similarity=0.511 Sum_probs=127.2
Q ss_pred CCChhhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhccC--CCCceeHHHHHHHHhc---CCC
Q 031791 9 ANYLGSMDEVRKVFNKFDKNGDGKISADELKDVLRSLGSKTSPEEVKRVMDEIDTD--GDGYIDFKEFSTFHLA---GGS 83 (153)
Q Consensus 9 ~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~--~~~~i~~~ef~~~~~~---~~~ 83 (153)
.+++++...++.+|..+|..++|.|+..+...+|+.+|..|+.+++.+.......+ +-.+++|++|+.+++. ...
T Consensus 4 ~~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~ 83 (152)
T KOG0030|consen 4 AFTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKD 83 (152)
T ss_pred ccCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccc
Confidence 35677889999999999999999999999999999999999999999998888766 4578999999998876 344
Q ss_pred CchHHHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHhhc
Q 031791 84 TDGTKELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKVDADGDGHVNFEEFKKMMTR 152 (153)
Q Consensus 84 ~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 152 (153)
....+.+-.-++.||++++|.|...|++++|.++|..+++.+++.++.-. .|.+|.|.|+.|++.+..
T Consensus 84 q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i~~ 151 (152)
T KOG0030|consen 84 QGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVKHIMS 151 (152)
T ss_pred cCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHHHHHHhc
Confidence 55567888899999999999999999999999999999999999998776 467899999999987753
No 8
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.90 E-value=5.1e-22 Score=125.48 Aligned_cols=141 Identities=29% Similarity=0.526 Sum_probs=118.1
Q ss_pred CCCChhhHHHHHHHHHhhCCC-CCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCc-eeHHHHHHHHhcCCCCc
Q 031791 8 GANYLGSMDEVRKVFNKFDKN-GDGKISADELKDVLRSLGSKTSPEEVKRVMDEIDTDGDGY-IDFKEFSTFHLAGGSTD 85 (153)
Q Consensus 8 ~~~~~~~~~~l~~~f~~~d~~-~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~-i~~~ef~~~~~~~~~~~ 85 (153)
..++..++..++..|..++++ ++|.|+.+||..+....- ..-..+++..++.+++|. |++++|+..+....+..
T Consensus 25 ~~fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~~----Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~ 100 (187)
T KOG0034|consen 25 TQFSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPELAL----NPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKA 100 (187)
T ss_pred cccCHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHhc----CcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCc
Confidence 348999999999999999999 999999999999983322 233567888888887777 99999999999865555
Q ss_pred hHH-HHHHHhhhhcCCCCCCccHHHHHHHHHHhCC-CCC--H----HHHHHHHHhhcCCCCCcccHHHHHHHhhc
Q 031791 86 GTK-ELKDAFDLYDMDQNGLISANELHAVLKKLGE-KSS--L----KDCVNMIKKVDADGDGHVNFEEFKKMMTR 152 (153)
Q Consensus 86 ~~~-~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~-~~~--~----~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 152 (153)
..+ ++..+|+.||.+++|+|+++|+.+++..+.. ..+ + ..++.++..+|.+++|.||++||.+++.+
T Consensus 101 ~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 101 SKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred cHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 555 9999999999999999999999999998743 334 3 33566788999999999999999998865
No 9
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.87 E-value=1.8e-20 Score=118.58 Aligned_cols=143 Identities=22% Similarity=0.367 Sum_probs=122.9
Q ss_pred CCCCChhhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHhCC-CCCHHHHHHHHHHhccCCCCceeHHHHHHHHhcCCCCc
Q 031791 7 NGANYLGSMDEVRKVFNKFDKNGDGKISADELKDVLRSLGS-KTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLAGGSTD 85 (153)
Q Consensus 7 ~~~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~-~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~ 85 (153)
...+++.+++.+++-|..- .++|.++.++|..++..... .-+......+|+.+|.+++|.|++.||+..++...+..
T Consensus 20 ~t~f~~~ei~~~Yr~Fk~~--cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt 97 (193)
T KOG0044|consen 20 QTKFSKKEIQQWYRGFKNE--CPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGT 97 (193)
T ss_pred hcCCCHHHHHHHHHHhccc--CCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCc
Confidence 3567777777777777753 36899999999999998864 56677889999999999999999999999999999999
Q ss_pred hHHHHHHHhhhhcCCCCCCccHHHHHHHHHHh----CC-------CCCHHHHHHHHHhhcCCCCCcccHHHHHHHhh
Q 031791 86 GTKELKDAFDLYDMDQNGLISANELHAVLKKL----GE-------KSSLKDCVNMIKKVDADGDGHVNFEEFKKMMT 151 (153)
Q Consensus 86 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~----~~-------~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 151 (153)
..+++..+|++||.+++|+|++.|+..++++. +. ...++.+..+|+.+|.|.+|.||++||...+.
T Consensus 98 ~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~ 174 (193)
T KOG0044|consen 98 LEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCK 174 (193)
T ss_pred HHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhh
Confidence 99999999999999999999999999999874 21 12346688999999999999999999998764
No 10
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.85 E-value=1.8e-19 Score=113.86 Aligned_cols=131 Identities=28% Similarity=0.466 Sum_probs=121.5
Q ss_pred HHHHHHHHHhhCCCCCCccCHHHHHHHHHHh-CCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhcCCCCchHHHHHHH
Q 031791 15 MDEVRKVFNKFDKNGDGKISADELKDVLRSL-GSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLAGGSTDGTKELKDA 93 (153)
Q Consensus 15 ~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 93 (153)
-..+...|...|++..|.|+.+|+...|... ..+.+.+.+..++..+|.+..|+|++.||..++.. ...++.+
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~------i~~Wr~v 129 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKY------INQWRNV 129 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHH------HHHHHHH
Confidence 4478899999999999999999999999866 44778899999999999999999999999999975 5789999
Q ss_pred hhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHhh
Q 031791 94 FDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKVDADGDGHVNFEEFKKMMT 151 (153)
Q Consensus 94 f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 151 (153)
|+.||.|++|.|+..||++.|..+|..++++..+.+++.+|...+|.|.+++|++++.
T Consensus 130 F~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv 187 (221)
T KOG0037|consen 130 FRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCV 187 (221)
T ss_pred HHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988899999999999875
No 11
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.80 E-value=6.4e-18 Score=115.68 Aligned_cols=138 Identities=25% Similarity=0.455 Sum_probs=126.8
Q ss_pred CCChhhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHhCCC-CCHHHHHHHHHHhccCCCCceeHHHHHHHHhcCCCCchH
Q 031791 9 ANYLGSMDEVRKVFNKFDKNGDGKISADELKDVLRSLGSK-TSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLAGGSTDGT 87 (153)
Q Consensus 9 ~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~-~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~ 87 (153)
...++-..++...|..+|.+++|.++..++.+.+..+..+ +.....+.+++..|.+.+|.++|.||..++.. .+
T Consensus 7 ~~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~-----~E 81 (463)
T KOG0036|consen 7 ETDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN-----KE 81 (463)
T ss_pred CCcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH-----hH
Confidence 3455666788999999999999999999999999999877 77788899999999999999999999999975 44
Q ss_pred HHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHhh
Q 031791 88 KELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKVDADGDGHVNFEEFKKMMT 151 (153)
Q Consensus 88 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 151 (153)
.++..+|...|.+++|.|+..|+.+.|+.+|.+++++++..+++..|+++++.|+++||.+.+.
T Consensus 82 ~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~l 145 (463)
T KOG0036|consen 82 LELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLL 145 (463)
T ss_pred HHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhh
Confidence 7788999999999999999999999999999999999999999999999999999999998765
No 12
>PLN02964 phosphatidylserine decarboxylase
Probab=99.64 E-value=1e-14 Score=107.29 Aligned_cols=105 Identities=22% Similarity=0.362 Sum_probs=95.0
Q ss_pred CCCChhhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHhC-CCCCHHH---HHHHHHHhccCCCCceeHHHHHHHHhcCCC
Q 031791 8 GANYLGSMDEVRKVFNKFDKNGDGKISADELKDVLRSLG-SKTSPEE---VKRVMDEIDTDGDGYIDFKEFSTFHLAGGS 83 (153)
Q Consensus 8 ~~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~---~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~ 83 (153)
..++..+++.+++.|..+|++++|.+ +..+++.+| ..++..+ ++.+|..+|.+++|.|++.||+.++.....
T Consensus 135 t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~ 210 (644)
T PLN02964 135 FDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGN 210 (644)
T ss_pred hhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhcc
Confidence 56788899999999999999999986 888889999 5777776 899999999999999999999999887655
Q ss_pred CchHHHHHHHhhhhcCCCCCCccHHHHHHHHHH
Q 031791 84 TDGTKELKDAFDLYDMDQNGLISANELHAVLKK 116 (153)
Q Consensus 84 ~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~ 116 (153)
....+.+..+|+.+|.+++|.|+.+||..++..
T Consensus 211 ~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 211 LVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred CCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 566788999999999999999999999999998
No 13
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.55 E-value=1.7e-13 Score=85.18 Aligned_cols=102 Identities=31% Similarity=0.502 Sum_probs=91.9
Q ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHhcCCCCchHHHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCC-----CHHH
Q 031791 51 PEEVKRVMDEIDTDGDGYIDFKEFSTFHLAGGSTDGTKELKDAFDLYDMDQNGLISANELHAVLKKLGEKS-----SLKD 125 (153)
Q Consensus 51 ~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~-----~~~~ 125 (153)
..++..+|..+|.+++|.|+..++-.+++..........+..++..+|.+++|.|+..+|..++....... +.++
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~e 86 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEE 86 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHH
Confidence 45688899999999999999999999999988888889999999999999999999999999999875432 3459
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHhhc
Q 031791 126 CVNMIKKVDADGDGHVNFEEFKKMMTR 152 (153)
Q Consensus 126 ~~~~~~~~d~~~~g~is~~ef~~~l~~ 152 (153)
+.++|+.+|.+++|.||..++..+|.+
T Consensus 87 l~eaF~~fD~d~~G~Is~~el~~~l~~ 113 (151)
T KOG0027|consen 87 LKEAFRVFDKDGDGFISASELKKVLTS 113 (151)
T ss_pred HHHHHHHHccCCCCcCcHHHHHHHHHH
Confidence 999999999999999999999998864
No 14
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=7.2e-14 Score=93.48 Aligned_cols=135 Identities=20% Similarity=0.351 Sum_probs=109.3
Q ss_pred hHHHHHHHHHhhCCCCCCccCHHHHHHHHHHhCC-CCCHHHHHHHHHHhccCCCCceeHHHHHHHHhcCC-----CCchH
Q 031791 14 SMDEVRKVFNKFDKNGDGKISADELKDVLRSLGS-KTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLAGG-----STDGT 87 (153)
Q Consensus 14 ~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~-~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~-----~~~~~ 87 (153)
.+..-++.|...|.+++|.++.+||..+|..=.+ .+..-.+..-+...|.|++|.|++.||+--+.... +....
T Consensus 161 m~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~ 240 (325)
T KOG4223|consen 161 MIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVL 240 (325)
T ss_pred HHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCccccc
Confidence 3566678899999999999999999999864433 24455677777888999999999999998766522 22222
Q ss_pred HHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHH
Q 031791 88 KELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKVDADGDGHVNFEEFKK 148 (153)
Q Consensus 88 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~ 148 (153)
..-...+...|.+++|+++.+|++.++..-+......++..++...|.|++|++|++|-+.
T Consensus 241 ~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 241 TEREQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred ccHHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhh
Confidence 3445778888999999999999998888777777788999999999999999999999764
No 15
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.54 E-value=5.1e-14 Score=75.46 Aligned_cols=62 Identities=40% Similarity=0.695 Sum_probs=54.3
Q ss_pred HHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHH----HHHHHHHhhcCCCCCcccHHHHHHHh
Q 031791 89 ELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLK----DCVNMIKKVDADGDGHVNFEEFKKMM 150 (153)
Q Consensus 89 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~----~~~~~~~~~d~~~~g~is~~ef~~~l 150 (153)
+++.+|..+|.+++|.|+.+|+..++..++...++. .+..++..+|.+++|.|+++||.+++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 467899999999999999999999999998766554 45556999999999999999999875
No 16
>PTZ00183 centrin; Provisional
Probab=99.51 E-value=8.8e-13 Score=82.49 Aligned_cols=100 Identities=26% Similarity=0.430 Sum_probs=86.0
Q ss_pred HHHHHHHHHhccCCCCceeHHHHHHHHhcCCCCchHHHHHHHhhhhcCCCCCCccHHHHHHHHHHh-CCCCCHHHHHHHH
Q 031791 52 EEVKRVMDEIDTDGDGYIDFKEFSTFHLAGGSTDGTKELKDAFDLYDMDQNGLISANELHAVLKKL-GEKSSLKDCVNMI 130 (153)
Q Consensus 52 ~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~ 130 (153)
..+..+|..+|.+++|.|++.+|..++...........+..+|..+|.+++|.|++++|..++... ........+..+|
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F 96 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAF 96 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 457778999999999999999999998865444455789999999999999999999999987764 3445667899999
Q ss_pred HhhcCCCCCcccHHHHHHHhh
Q 031791 131 KKVDADGDGHVNFEEFKKMMT 151 (153)
Q Consensus 131 ~~~d~~~~g~is~~ef~~~l~ 151 (153)
+.+|.+++|.|+..+|..++.
T Consensus 97 ~~~D~~~~G~i~~~e~~~~l~ 117 (158)
T PTZ00183 97 RLFDDDKTGKISLKNLKRVAK 117 (158)
T ss_pred HHhCCCCCCcCcHHHHHHHHH
Confidence 999999999999999998875
No 17
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.51 E-value=1e-13 Score=77.90 Aligned_cols=64 Identities=20% Similarity=0.343 Sum_probs=59.6
Q ss_pred HHHHHHhhhhcC-CCCCCccHHHHHHHHHH-hCCCCCH-HHHHHHHHhhcCCCCCcccHHHHHHHhh
Q 031791 88 KELKDAFDLYDM-DQNGLISANELHAVLKK-LGEKSSL-KDCVNMIKKVDADGDGHVNFEEFKKMMT 151 (153)
Q Consensus 88 ~~~~~~f~~~d~-~~~g~i~~~e~~~~l~~-~~~~~~~-~~~~~~~~~~d~~~~g~is~~ef~~~l~ 151 (153)
..+..+|..||. +++|+|+..||+.++.. ++..+++ .+++.+++.+|.|++|.|+|+||+.++.
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~ 74 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIG 74 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 568899999999 99999999999999999 8877887 8999999999999999999999998875
No 18
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.51 E-value=1.1e-12 Score=78.30 Aligned_cols=141 Identities=22% Similarity=0.388 Sum_probs=101.1
Q ss_pred CCChhhHHHHHHHHHhhCCC-----------CCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCceeHHHHHHH
Q 031791 9 ANYLGSMDEVRKVFNKFDKN-----------GDGKISADELKDVLRSLGSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTF 77 (153)
Q Consensus 9 ~~~~~~~~~l~~~f~~~d~~-----------~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~ 77 (153)
-++.+++-+++..|+.+.++ ..-.++.+.+.++ ..+.-.+-. +++..++..++.|.+++.+|+.+
T Consensus 21 FFtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~kM-PELkenpfk---~ri~e~FSeDG~GnlsfddFlDm 96 (189)
T KOG0038|consen 21 FFTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEKM-PELKENPFK---RRICEVFSEDGRGNLSFDDFLDM 96 (189)
T ss_pred cccHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhhC-hhhhcChHH---HHHHHHhccCCCCcccHHHHHHH
Confidence 35566677777777766442 1224555555544 223222223 44556667799999999999999
Q ss_pred HhcCCC-CchHHHHHHHhhhhcCCCCCCccHHHHHHHHHHhC-CCCCHHHH----HHHHHhhcCCCCCcccHHHHHHHhh
Q 031791 78 HLAGGS-TDGTKELKDAFDLYDMDQNGLISANELHAVLKKLG-EKSSLKDC----VNMIKKVDADGDGHVNFEEFKKMMT 151 (153)
Q Consensus 78 ~~~~~~-~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~----~~~~~~~d~~~~g~is~~ef~~~l~ 151 (153)
++.... .+..-++..+|++||-++++.|...++.+.+..+- ..++++++ +.++.+.|.+++|++++.+|..++.
T Consensus 97 fSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~ 176 (189)
T KOG0038|consen 97 FSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVIL 176 (189)
T ss_pred HHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Confidence 887332 23335788899999999999999999999999874 56777664 4567788999999999999999886
Q ss_pred cC
Q 031791 152 RS 153 (153)
Q Consensus 152 ~~ 153 (153)
++
T Consensus 177 ra 178 (189)
T KOG0038|consen 177 RA 178 (189)
T ss_pred hC
Confidence 53
No 19
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.49 E-value=1.8e-12 Score=79.81 Aligned_cols=99 Identities=22% Similarity=0.333 Sum_probs=88.7
Q ss_pred HHHHHHHHHhccCCCCceeHHHHHHHHhcCCCCchHHHHHHHhhhhcCCCCCCccHHHHHHHHHHhC-CCCCHHHHHHHH
Q 031791 52 EEVKRVMDEIDTDGDGYIDFKEFSTFHLAGGSTDGTKELKDAFDLYDMDQNGLISANELHAVLKKLG-EKSSLKDCVNMI 130 (153)
Q Consensus 52 ~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~ 130 (153)
+++...|..+|.+++|.|++.++..+++..........+..++..+|. +.|.|+..+|..++.... ...+.+++..+|
T Consensus 20 ~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF 98 (160)
T COG5126 20 QELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAF 98 (160)
T ss_pred HHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 345667888899999999999999999988888888999999999999 999999999999999765 455689999999
Q ss_pred HhhcCCCCCcccHHHHHHHhh
Q 031791 131 KKVDADGDGHVNFEEFKKMMT 151 (153)
Q Consensus 131 ~~~d~~~~g~is~~ef~~~l~ 151 (153)
+.+|.+++|.|+..++..++.
T Consensus 99 ~~fD~d~dG~Is~~eL~~vl~ 119 (160)
T COG5126 99 KLFDKDHDGYISIGELRRVLK 119 (160)
T ss_pred HHhCCCCCceecHHHHHHHHH
Confidence 999999999999999998875
No 20
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.47 E-value=1.9e-12 Score=90.10 Aligned_cols=134 Identities=19% Similarity=0.346 Sum_probs=105.1
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHHh-CCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhcCCCC----------
Q 031791 16 DEVRKVFNKFDKNGDGKISADELKDVLRSL-GSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLAGGST---------- 84 (153)
Q Consensus 16 ~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~---------- 84 (153)
..+..-|+.+|+.+.|+|+..+++.++..+ |+.++.-.+.- +....+.+|.|.|.+.+..+......
T Consensus 464 sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~--kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvet 541 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRP--KLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVET 541 (631)
T ss_pred hHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhh--hccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHH
Confidence 456677999999999999999999998766 67766433322 12334567899999887776541111
Q ss_pred --chHHHHHHHhhhhcCCCCCCccHHHHHHHHHHhC----CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHhh
Q 031791 85 --DGTKELKDAFDLYDMDQNGLISANELHAVLKKLG----EKSSLKDCVNMIKKVDADGDGHVNFEEFKKMMT 151 (153)
Q Consensus 85 --~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~----~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 151 (153)
.....+..+|+..|.|++|.|+.+||+..+.-++ ..+++.++.++...+|.|++|.|++.||+++++
T Consensus 542 LYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 542 LYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred HHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 1123477899999999999999999999998764 467889999999999999999999999999875
No 21
>PTZ00184 calmodulin; Provisional
Probab=99.46 E-value=3.2e-12 Score=79.10 Aligned_cols=100 Identities=30% Similarity=0.437 Sum_probs=84.7
Q ss_pred HHHHHHHHHhccCCCCceeHHHHHHHHhcCCCCchHHHHHHHhhhhcCCCCCCccHHHHHHHHHHhC-CCCCHHHHHHHH
Q 031791 52 EEVKRVMDEIDTDGDGYIDFKEFSTFHLAGGSTDGTKELKDAFDLYDMDQNGLISANELHAVLKKLG-EKSSLKDCVNMI 130 (153)
Q Consensus 52 ~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~ 130 (153)
..+...|..+|.+++|.|++.+|..++.........+.+..+|..+|.+++|.|++++|..++.... .......+..+|
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F 90 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAF 90 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 3466788899999999999999999887655444567899999999999999999999999988653 334556788999
Q ss_pred HhhcCCCCCcccHHHHHHHhh
Q 031791 131 KKVDADGDGHVNFEEFKKMMT 151 (153)
Q Consensus 131 ~~~d~~~~g~is~~ef~~~l~ 151 (153)
..+|.+++|.|+.++|..++.
T Consensus 91 ~~~D~~~~g~i~~~e~~~~l~ 111 (149)
T PTZ00184 91 KVFDRDGNGFISAAELRHVMT 111 (149)
T ss_pred HhhCCCCCCeEeHHHHHHHHH
Confidence 999999999999999988774
No 22
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.45 E-value=8.5e-13 Score=74.30 Aligned_cols=64 Identities=25% Similarity=0.496 Sum_probs=59.3
Q ss_pred HHHHHHhhhhc-CCCCC-CccHHHHHHHHHH-----hCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHhh
Q 031791 88 KELKDAFDLYD-MDQNG-LISANELHAVLKK-----LGEKSSLKDCVNMIKKVDADGDGHVNFEEFKKMMT 151 (153)
Q Consensus 88 ~~~~~~f~~~d-~~~~g-~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 151 (153)
..+..+|..|| .+++| .|+..||+.+++. +|...++.++..+++.+|.|++|.|+|++|+.++.
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~ 78 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVA 78 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 56889999998 79999 5999999999999 88888999999999999999999999999998875
No 23
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.45 E-value=2.1e-11 Score=77.68 Aligned_cols=128 Identities=20% Similarity=0.283 Sum_probs=105.2
Q ss_pred hhhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhcCCCCchHHHHH
Q 031791 12 LGSMDEVRKVFNKFDKNGDGKISADELKDVLRSLGSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLAGGSTDGTKELK 91 (153)
Q Consensus 12 ~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~ 91 (153)
...++.++.+...+|.+.+|.|..+||..+.+. -..|+.+|+.+|+|+.|.|+..|+...+....-.-..+...
T Consensus 90 ~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~------i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~ 163 (221)
T KOG0037|consen 90 PFSIETCRLMISMFDRDNSGTIGFKEFKALWKY------INQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYN 163 (221)
T ss_pred CCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHH------HHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHH
Confidence 344556666677888999999999999998876 35678899999999999999999999888755445558889
Q ss_pred HHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCc--ccHHHHHHHhh
Q 031791 92 DAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKVDADGDGH--VNFEEFKKMMT 151 (153)
Q Consensus 92 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~--is~~ef~~~l~ 151 (153)
.+++.||..+.|.|..++|.++|-.+ ..+.+.|+..|.+.+|. |+|++|+.+..
T Consensus 164 ~lv~kyd~~~~g~i~FD~FI~ccv~L------~~lt~~Fr~~D~~q~G~i~~~y~dfl~~t~ 219 (221)
T KOG0037|consen 164 LLVRKYDRFGGGRIDFDDFIQCCVVL------QRLTEAFRRRDTAQQGSITISYDDFLQMTM 219 (221)
T ss_pred HHHHHhccccCCceeHHHHHHHHHHH------HHHHHHHHHhccccceeEEEeHHHHHHHhh
Confidence 99999998889999999999998865 45678899999888885 77889987643
No 24
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.45 E-value=2.2e-12 Score=81.99 Aligned_cols=103 Identities=27% Similarity=0.337 Sum_probs=87.8
Q ss_pred hHHHHHHHHHhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhc----C-------C
Q 031791 14 SMDEVRKVFNKFDKNGDGKISADELKDVLRSLGSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLA----G-------G 82 (153)
Q Consensus 14 ~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~----~-------~ 82 (153)
.....+.+|..+|.+++|.|+..||..++..+.-....+-+...|+.+|.+++|.|++.|++.++.. . .
T Consensus 62 ~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~ 141 (193)
T KOG0044|consen 62 ASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPED 141 (193)
T ss_pred HHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcc
Confidence 3456678899999999999999999999888766666777888899999999999999999998775 1 1
Q ss_pred CCchHHHHHHHhhhhcCCCCCCccHHHHHHHHHH
Q 031791 83 STDGTKELKDAFDLYDMDQNGLISANELHAVLKK 116 (153)
Q Consensus 83 ~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~ 116 (153)
.....+.+..+|..+|.+++|.||.+||...+.+
T Consensus 142 ~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 142 EETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred cccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 3345678999999999999999999999988774
No 25
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.43 E-value=1.3e-12 Score=73.49 Aligned_cols=69 Identities=20% Similarity=0.348 Sum_probs=63.1
Q ss_pred hhhHHHHHHHHHhhCC-CCCCccCHHHHHHHHHH-hCCCCCH-HHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 031791 12 LGSMDEVRKVFNKFDK-NGDGKISADELKDVLRS-LGSKTSP-EEVKRVMDEIDTDGDGYIDFKEFSTFHLA 80 (153)
Q Consensus 12 ~~~~~~l~~~f~~~d~-~~~g~l~~~e~~~~l~~-~~~~~~~-~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 80 (153)
+..+..+..+|+.+|+ +++|.|+..+|..++.. ++..++. .+++.+++.+|.+++|.|+|.||+.++..
T Consensus 4 E~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 4 EKAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 4568889999999999 99999999999999998 8877777 89999999999999999999999988765
No 26
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.43 E-value=1.2e-12 Score=70.04 Aligned_cols=62 Identities=47% Similarity=0.846 Sum_probs=51.5
Q ss_pred HHHHHHHhhCCCCCCccCHHHHHHHHHHhCCCCCH----HHHHHHHHHhccCCCCceeHHHHHHHH
Q 031791 17 EVRKVFNKFDKNGDGKISADELKDVLRSLGSKTSP----EEVKRVMDEIDTDGDGYIDFKEFSTFH 78 (153)
Q Consensus 17 ~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~----~~~~~l~~~~d~~~~~~i~~~ef~~~~ 78 (153)
+|+.+|..+|.+++|.|+.+||..++..++...+. ..++.+|+.+|.+++|.|++.||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 47889999999999999999999999998876544 445556888899889999999988764
No 27
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.39 E-value=5.4e-12 Score=71.04 Aligned_cols=69 Identities=35% Similarity=0.630 Sum_probs=62.9
Q ss_pred hhhHHHHHHHHHhhC-CCCCC-ccCHHHHHHHHHH-----hCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 031791 12 LGSMDEVRKVFNKFD-KNGDG-KISADELKDVLRS-----LGSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLA 80 (153)
Q Consensus 12 ~~~~~~l~~~f~~~d-~~~~g-~l~~~e~~~~l~~-----~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 80 (153)
+..+..+..+|..+| .+++| .|+..+|..+|+. +|..+++.++..+++.+|.+++|.|+|.+|+.++..
T Consensus 4 e~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 4 EKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 456788999999998 79999 5999999999998 888889999999999999999999999999988754
No 28
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=99.36 E-value=1.4e-11 Score=86.25 Aligned_cols=140 Identities=20% Similarity=0.338 Sum_probs=112.2
Q ss_pred CCCCCChhhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHh----ccCCCCceeHHHHHHHHhcC
Q 031791 6 SNGANYLGSMDEVRKVFNKFDKNGDGKISADELKDVLRSLGSKTSPEEVKRVMDEI----DTDGDGYIDFKEFSTFHLAG 81 (153)
Q Consensus 6 ~~~~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~----d~~~~~~i~~~ef~~~~~~~ 81 (153)
..+-+|-+.-..+...|..+|++++|.|+.+++...-. ..++.--++++|..+ -...+|+++|++|+.++...
T Consensus 268 ~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d---~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~ 344 (493)
T KOG2562|consen 268 VTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGD---HTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAE 344 (493)
T ss_pred hhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhc---cchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHh
Confidence 34456666677777779999999999999999986532 345677889999933 34567899999999999886
Q ss_pred CCCchHHHHHHHhhhhcCCCCCCccHHHHHHHHHHh-------CC-C-CCHHHHHHHHHhhcCCCCCcccHHHHHH
Q 031791 82 GSTDGTKELKDAFDLYDMDQNGLISANELHAVLKKL-------GE-K-SSLKDCVNMIKKVDADGDGHVNFEEFKK 148 (153)
Q Consensus 82 ~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-------~~-~-~~~~~~~~~~~~~d~~~~g~is~~ef~~ 148 (153)
.......-+..+|+.+|.+++|.|+..|++.+++.. +. . .-+..+.+++...-+...++|++++|..
T Consensus 345 e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 345 EDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred ccCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 666666789999999999999999999999998863 21 1 2246677888999888999999999976
No 29
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=1.8e-11 Score=82.17 Aligned_cols=139 Identities=25% Similarity=0.376 Sum_probs=106.9
Q ss_pred hhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhcCC--------CC
Q 031791 13 GSMDEVRKVFNKFDKNGDGKISADELKDVLRSLGSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLAGG--------ST 84 (153)
Q Consensus 13 ~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~--------~~ 84 (153)
+...++..++..+|.+++|.|+..++...+...--.--..+..+-+..+|.+.+|.|+|.+++...-... ..
T Consensus 74 e~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e 153 (325)
T KOG4223|consen 74 ESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEE 153 (325)
T ss_pred hhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccch
Confidence 3567888999999999999999999999876553333455667778888999999999999988766311 00
Q ss_pred ch------HHHHHHHhhhhcCCCCCCccHHHHHHHHHHhC-CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHhh
Q 031791 85 DG------TKELKDAFDLYDMDQNGLISANELHAVLKKLG-EKSSLKDCVNMIKKVDADGDGHVNFEEFKKMMT 151 (153)
Q Consensus 85 ~~------~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 151 (153)
.. .-.-..-|+..|.+++|.++++||..++..-. +.+.+=.+.+-+...|.|++|.|+++||+.=+.
T Consensus 154 ~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~ 227 (325)
T KOG4223|consen 154 DNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLY 227 (325)
T ss_pred hcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHh
Confidence 00 01345679999999999999999999988654 334444567788889999999999999987553
No 30
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.35 E-value=7.4e-12 Score=71.66 Aligned_cols=65 Identities=29% Similarity=0.480 Sum_probs=57.7
Q ss_pred HHHHHHhhhhcC-CC-CCCccHHHHHHHHHH-----hCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHhhc
Q 031791 88 KELKDAFDLYDM-DQ-NGLISANELHAVLKK-----LGEKSSLKDCVNMIKKVDADGDGHVNFEEFKKMMTR 152 (153)
Q Consensus 88 ~~~~~~f~~~d~-~~-~g~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 152 (153)
..+..+|..||. ++ +|.|+..|++.++.. ++...+++++..++..+|.+++|.|+|++|+.++..
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 568889999997 87 699999999999986 466778899999999999999999999999988753
No 31
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.35 E-value=1.3e-11 Score=70.97 Aligned_cols=70 Identities=24% Similarity=0.355 Sum_probs=64.1
Q ss_pred CCChhhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 031791 9 ANYLGSMDEVRKVFNKFDKNGDGKISADELKDVLRSLGSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLA 80 (153)
Q Consensus 9 ~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 80 (153)
.+++.++..++.+|..+|.+++|.|+..++..+++..+ ++..++..++..++.+++|.|++.+|+.++..
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 47889999999999999999999999999999998865 57889999999999999999999999988764
No 32
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.35 E-value=1e-11 Score=70.80 Aligned_cols=66 Identities=24% Similarity=0.480 Sum_probs=57.5
Q ss_pred HHHHHHHhhhhc-CCCCC-CccHHHHHHHHHH-hC----CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHhhc
Q 031791 87 TKELKDAFDLYD-MDQNG-LISANELHAVLKK-LG----EKSSLKDCVNMIKKVDADGDGHVNFEEFKKMMTR 152 (153)
Q Consensus 87 ~~~~~~~f~~~d-~~~~g-~i~~~e~~~~l~~-~~----~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 152 (153)
.+.+..+|..|| .+++| .|+..|++.+++. +| ...++.++..++..+|.+++|.|+|++|+.++..
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 366889999997 99999 5999999999986 44 3457889999999999999999999999988753
No 33
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.33 E-value=1.3e-11 Score=69.42 Aligned_cols=64 Identities=23% Similarity=0.445 Sum_probs=57.5
Q ss_pred HHHHHHhhhhcC-CC-CCCccHHHHHHHHHH---hCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHhh
Q 031791 88 KELKDAFDLYDM-DQ-NGLISANELHAVLKK---LGEKSSLKDCVNMIKKVDADGDGHVNFEEFKKMMT 151 (153)
Q Consensus 88 ~~~~~~f~~~d~-~~-~g~i~~~e~~~~l~~---~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 151 (153)
..+-.+|..|+. ++ +|.|+.+||+.++.. +|...+++++.++++.+|.+++|.|+|++|+.++.
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~ 78 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLG 78 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Confidence 456778999998 67 899999999999973 68889999999999999999999999999998875
No 34
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.33 E-value=7.1e-12 Score=64.32 Aligned_cols=52 Identities=38% Similarity=0.678 Sum_probs=48.5
Q ss_pred CCCCccHHHHHHHHHHhCCC-CCHHHHHHHHHhhcCCCCCcccHHHHHHHhhc
Q 031791 101 QNGLISANELHAVLKKLGEK-SSLKDCVNMIKKVDADGDGHVNFEEFKKMMTR 152 (153)
Q Consensus 101 ~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 152 (153)
++|.|+.++|+.++..+|.. +++.++..++..+|.+++|.|+|+||+.++.+
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999888988 99999999999999999999999999998863
No 35
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.31 E-value=2.2e-11 Score=69.45 Aligned_cols=64 Identities=20% Similarity=0.380 Sum_probs=55.1
Q ss_pred HHHHHHhhhhc-CCCCC-CccHHHHHHHHHHh-----CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHhh
Q 031791 88 KELKDAFDLYD-MDQNG-LISANELHAVLKKL-----GEKSSLKDCVNMIKKVDADGDGHVNFEEFKKMMT 151 (153)
Q Consensus 88 ~~~~~~f~~~d-~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 151 (153)
..+..+|..|| .+++| .|+..||+.++... ....++.++..++..+|.|++|.|+|+||+.++.
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~ 80 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVA 80 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence 45778899999 78998 59999999999763 3344778999999999999999999999999875
No 36
>PLN02964 phosphatidylserine decarboxylase
Probab=99.30 E-value=5.4e-11 Score=88.02 Aligned_cols=121 Identities=17% Similarity=0.283 Sum_probs=90.7
Q ss_pred CCccCHHHHHHHHHH--hCC-CCCHHHHHHHHHHhccCCCCceeHHHHHHHHhcCCCCchHH--HHHHHhhhhcCCCCCC
Q 031791 30 DGKISADELKDVLRS--LGS-KTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLAGGSTDGTK--ELKDAFDLYDMDQNGL 104 (153)
Q Consensus 30 ~g~l~~~e~~~~l~~--~~~-~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~--~~~~~f~~~d~~~~g~ 104 (153)
...++++++...... ..+ .....++.+.|..+|.+++|.+ ....+..+.. ..+...+ .+..+|..+|.+++|.
T Consensus 118 ~~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i-Lg~ilrslG~-~~pte~e~~fi~~mf~~~D~DgdG~ 195 (644)
T PLN02964 118 TNRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKV-VGSIFVSCSI-EDPVETERSFARRILAIVDYDEDGQ 195 (644)
T ss_pred cCCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcC-HHHHHHHhCC-CCCCHHHHHHHHHHHHHhCCCCCCe
Confidence 345677776655432 111 1233567778899999999987 4433333321 1233322 3899999999999999
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHhhc
Q 031791 105 ISANELHAVLKKLGEKSSLKDCVNMIKKVDADGDGHVNFEEFKKMMTR 152 (153)
Q Consensus 105 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 152 (153)
|+.+||..++..++...+++++..+|+.+|.+++|.|+++||..++..
T Consensus 196 IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 196 LSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred EcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 999999999999988788999999999999999999999999998764
No 37
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.30 E-value=2.7e-11 Score=64.94 Aligned_cols=59 Identities=32% Similarity=0.426 Sum_probs=53.7
Q ss_pred HHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHhh
Q 031791 91 KDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKVDADGDGHVNFEEFKKMMT 151 (153)
Q Consensus 91 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 151 (153)
+.+|..+|++++|.|+.+|+..++...| .+..++..++..+|.+++|.|++++|+.++.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~ 60 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMH 60 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence 4689999999999999999999999887 4788899999999999999999999998764
No 38
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.29 E-value=3.1e-11 Score=69.36 Aligned_cols=64 Identities=22% Similarity=0.359 Sum_probs=58.1
Q ss_pred hHHHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHhh
Q 031791 86 GTKELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKVDADGDGHVNFEEFKKMMT 151 (153)
Q Consensus 86 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 151 (153)
....+..+|..+|.+++|.|+.++++.+++..+ ++.+++..++..+|.+++|.|++++|+.++.
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~ 71 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMH 71 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence 446788999999999999999999999999865 6788999999999999999999999998775
No 39
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.29 E-value=1.3e-10 Score=70.53 Aligned_cols=101 Identities=22% Similarity=0.351 Sum_probs=88.0
Q ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHhcCCCCchHHHHHHHhhhhcCCCCCCccHHHHHHHHHH-hCCCCCHHHHHHH
Q 031791 51 PEEVKRVMDEIDTDGDGYIDFKEFSTFHLAGGSTDGTKELKDAFDLYDMDQNGLISANELHAVLKK-LGEKSSLKDCVNM 129 (153)
Q Consensus 51 ~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~ 129 (153)
..++...|..+++++.|.|+++|+...+....-....+.+..+..-+|+++.|.|+.++|+.++.. ++...+.+++..+
T Consensus 32 ~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~a 111 (172)
T KOG0028|consen 32 KQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKA 111 (172)
T ss_pred HhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHH
Confidence 356888899999999999999999666666665666688999999999999999999999999775 5666799999999
Q ss_pred HHhhcCCCCCcccHHHHHHHhh
Q 031791 130 IKKVDADGDGHVNFEEFKKMMT 151 (153)
Q Consensus 130 ~~~~d~~~~g~is~~ef~~~l~ 151 (153)
|+.+|.+++|.||+.+|..+..
T Consensus 112 frl~D~D~~Gkis~~~lkrvak 133 (172)
T KOG0028|consen 112 FRLFDDDKTGKISQRNLKRVAK 133 (172)
T ss_pred HHcccccCCCCcCHHHHHHHHH
Confidence 9999999999999999987754
No 40
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=99.29 E-value=1.8e-10 Score=90.11 Aligned_cols=142 Identities=20% Similarity=0.414 Sum_probs=114.0
Q ss_pred CCCCCCCCChhhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHhCCCCC-------HHHHHHHHHHhccCCCCceeHHHHH
Q 031791 3 ANNSNGANYLGSMDEVRKVFNKFDKNGDGKISADELKDVLRSLGSKTS-------PEEVKRVMDEIDTDGDGYIDFKEFS 75 (153)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~-------~~~~~~l~~~~d~~~~~~i~~~ef~ 75 (153)
+++..++.|+++...++.+|..||.+.+|.+++.+|..+|+.+|+.++ ..+++.++..+|++.+|.|+..+|+
T Consensus 2240 qarn~~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~ 2319 (2399)
T KOG0040|consen 2240 QARNHNGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYM 2319 (2399)
T ss_pred HhhccCCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHH
Confidence 356788999999999999999999999999999999999999987653 3479999999999999999999999
Q ss_pred HHHhc--CCCCchHHHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhh----cCC----CCCcccHHH
Q 031791 76 TFHLA--GGSTDGTKELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKV----DAD----GDGHVNFEE 145 (153)
Q Consensus 76 ~~~~~--~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~----d~~----~~g~is~~e 145 (153)
.++.. ..+......+..+|+.+|. +..+|+.+++... ++.++++-++..+ ++. -.+.+.|.+
T Consensus 2320 afmi~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~-------ltreqaefc~s~m~~~~e~~~~~s~q~~l~y~d 2391 (2399)
T KOG0040|consen 2320 AFMISKETENILSSEEIEDAFRALDA-GKPYVTKEELYQN-------LTREQAEFCMSKMKPYAETSSGRSDQVALDYKD 2391 (2399)
T ss_pred HHHHhcccccccchHHHHHHHHHhhc-CCccccHHHHHhc-------CCHHHHHHHHHHhhhhcccccCCCccccccHHH
Confidence 99887 2233334689999999998 7789998877533 4556666555444 332 234699999
Q ss_pred HHHHhhc
Q 031791 146 FKKMMTR 152 (153)
Q Consensus 146 f~~~l~~ 152 (153)
|++.+..
T Consensus 2392 fv~sl~~ 2398 (2399)
T KOG0040|consen 2392 FVNSLFV 2398 (2399)
T ss_pred HHHHHhc
Confidence 9987754
No 41
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.28 E-value=2.9e-11 Score=68.41 Aligned_cols=66 Identities=24% Similarity=0.460 Sum_probs=57.5
Q ss_pred HHHHHHHhhhhcC--CCCCCccHHHHHHHHHH-hCCC----CCHHHHHHHHHhhcCCCCCcccHHHHHHHhhc
Q 031791 87 TKELKDAFDLYDM--DQNGLISANELHAVLKK-LGEK----SSLKDCVNMIKKVDADGDGHVNFEEFKKMMTR 152 (153)
Q Consensus 87 ~~~~~~~f~~~d~--~~~g~i~~~e~~~~l~~-~~~~----~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 152 (153)
...+..+|..||. +++|.|+..++..+++. ++.. .+..++..++..+|.+++|.|+|++|+.++..
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 3568889999999 89999999999999986 4533 35889999999999999999999999998753
No 42
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.27 E-value=5.3e-11 Score=67.01 Aligned_cols=69 Identities=28% Similarity=0.569 Sum_probs=61.5
Q ss_pred hhhHHHHHHHHHhhCC-CC-CCccCHHHHHHHHHH---hCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 031791 12 LGSMDEVRKVFNKFDK-NG-DGKISADELKDVLRS---LGSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLA 80 (153)
Q Consensus 12 ~~~~~~l~~~f~~~d~-~~-~g~l~~~e~~~~l~~---~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 80 (153)
++.+..|-.+|+.++. ++ +|.|+..||..++.. +|..++.+++..+++.+|.+++|.|+|.||+.++..
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 5567888999999998 56 899999999999963 688899999999999999999999999999988764
No 43
>PF14658 EF-hand_9: EF-hand domain
Probab=99.26 E-value=3.6e-11 Score=62.82 Aligned_cols=61 Identities=26% Similarity=0.561 Sum_probs=57.5
Q ss_pred HHhhhhcCCCCCCccHHHHHHHHHHhCC-CCCHHHHHHHHHhhcCCCC-CcccHHHHHHHhhc
Q 031791 92 DAFDLYDMDQNGLISANELHAVLKKLGE-KSSLKDCVNMIKKVDADGD-GHVNFEEFKKMMTR 152 (153)
Q Consensus 92 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~-g~is~~ef~~~l~~ 152 (153)
.+|..||+++.|.|...++..+|++++. .+++.+++.+...+|+++. |.|+++.|+.+|++
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 4799999999999999999999999998 8899999999999999998 99999999999874
No 44
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.26 E-value=7.9e-11 Score=61.81 Aligned_cols=61 Identities=52% Similarity=0.862 Sum_probs=57.1
Q ss_pred HHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHh
Q 031791 90 LKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKVDADGDGHVNFEEFKKMM 150 (153)
Q Consensus 90 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l 150 (153)
+..+|..+|.+++|.|+.+++..++..++.+.+...+..++..++.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4678999999999999999999999999999999999999999999999999999999876
No 45
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.25 E-value=9.7e-11 Score=66.75 Aligned_cols=69 Identities=38% Similarity=0.693 Sum_probs=59.7
Q ss_pred hhhHHHHHHHHHhhC-CCCCC-ccCHHHHHHHHHH-hC----CCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 031791 12 LGSMDEVRKVFNKFD-KNGDG-KISADELKDVLRS-LG----SKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLA 80 (153)
Q Consensus 12 ~~~~~~l~~~f~~~d-~~~~g-~l~~~e~~~~l~~-~~----~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 80 (153)
+..+..+.++|..+| .+++| .|+..++..+++. +| ..++..++..+++.+|.+++|.|+|.+|+.++..
T Consensus 5 e~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 5 ETAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 445688999999997 99999 4999999999975 43 3568899999999999999999999999988764
No 46
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.24 E-value=1.1e-10 Score=66.57 Aligned_cols=69 Identities=35% Similarity=0.672 Sum_probs=58.9
Q ss_pred hhhHHHHHHHHHhhC-CCCCC-ccCHHHHHHHHHHh-----CCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 031791 12 LGSMDEVRKVFNKFD-KNGDG-KISADELKDVLRSL-----GSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLA 80 (153)
Q Consensus 12 ~~~~~~l~~~f~~~d-~~~~g-~l~~~e~~~~l~~~-----~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 80 (153)
+..+..+.++|+.+| .+++| .|+..||..++... +...+..++..+++.+|.+++|.|+|.||+.++..
T Consensus 6 e~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 6 EGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 456788899999999 67998 59999999999762 33457789999999999999999999999998865
No 47
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.24 E-value=8.8e-11 Score=67.18 Aligned_cols=68 Identities=25% Similarity=0.591 Sum_probs=59.7
Q ss_pred hhHHHHHHHHHhhCC-CC-CCccCHHHHHHHHHH-----hCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 031791 13 GSMDEVRKVFNKFDK-NG-DGKISADELKDVLRS-----LGSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLA 80 (153)
Q Consensus 13 ~~~~~l~~~f~~~d~-~~-~g~l~~~e~~~~l~~-----~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 80 (153)
.....+..+|..+|. ++ +|.|+..++..++.. ++..++..++..++..+|.+++|.|+|.+|+.++..
T Consensus 5 ~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 5 HAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 446778999999997 87 699999999999976 466788999999999999999999999999988764
No 48
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.24 E-value=8.2e-11 Score=66.53 Aligned_cols=69 Identities=29% Similarity=0.565 Sum_probs=60.9
Q ss_pred hhhHHHHHHHHHhhCC--CCCCccCHHHHHHHHHH-hCCC----CCHHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 031791 12 LGSMDEVRKVFNKFDK--NGDGKISADELKDVLRS-LGSK----TSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLA 80 (153)
Q Consensus 12 ~~~~~~l~~~f~~~d~--~~~g~l~~~e~~~~l~~-~~~~----~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 80 (153)
+++++.++..|..+|+ +++|.|+..++..+++. ++.. .+..++..++..++.+++|.|+|.+|+.++..
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 5678899999999999 89999999999999975 4543 35899999999999999999999999998864
No 49
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.22 E-value=2.9e-10 Score=72.33 Aligned_cols=98 Identities=24% Similarity=0.435 Sum_probs=81.3
Q ss_pred HHHHHhhCCCCCCc-cCHHHHHHHHHHhCCCCCHH-HHHHHHHHhccCCCCceeHHHHHHHHhcCCC-------CchHHH
Q 031791 19 RKVFNKFDKNGDGK-ISADELKDVLRSLGSKTSPE-EVKRVMDEIDTDGDGYIDFKEFSTFHLAGGS-------TDGTKE 89 (153)
Q Consensus 19 ~~~f~~~d~~~~g~-l~~~e~~~~l~~~~~~~~~~-~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~-------~~~~~~ 89 (153)
.+++..++++++|. |+.++|.+.+.......... -+.-.|+.||.+++|.|+.+++..++..... ....+.
T Consensus 69 ~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i 148 (187)
T KOG0034|consen 69 DRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDI 148 (187)
T ss_pred HHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHH
Confidence 45677888888888 99999999998876655555 8899999999999999999999998877322 222345
Q ss_pred HHHHhhhhcCCCCCCccHHHHHHHHHH
Q 031791 90 LKDAFDLYDMDQNGLISANELHAVLKK 116 (153)
Q Consensus 90 ~~~~f~~~d~~~~g~i~~~e~~~~l~~ 116 (153)
+...|..+|.+++|.|+.+|+.+++..
T Consensus 149 ~d~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 149 VDKTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 778899999999999999999999885
No 50
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.21 E-value=1.5e-10 Score=65.23 Aligned_cols=64 Identities=22% Similarity=0.361 Sum_probs=55.3
Q ss_pred HHHHHHhhh-hcCCCCC-CccHHHHHHHHHHhC-----CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHhh
Q 031791 88 KELKDAFDL-YDMDQNG-LISANELHAVLKKLG-----EKSSLKDCVNMIKKVDADGDGHVNFEEFKKMMT 151 (153)
Q Consensus 88 ~~~~~~f~~-~d~~~~g-~i~~~e~~~~l~~~~-----~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 151 (153)
..+..+|.. +|.+++| .|+.+||+.++.... ...++.++..+++.+|.|++|.|+|+||+.++.
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~ 79 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIG 79 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 567788998 6788876 999999999999863 355678999999999999999999999998875
No 51
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.19 E-value=1.6e-10 Score=61.89 Aligned_cols=60 Identities=33% Similarity=0.506 Sum_probs=53.7
Q ss_pred HHHHHhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 031791 19 RKVFNKFDKNGDGKISADELKDVLRSLGSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLA 80 (153)
Q Consensus 19 ~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 80 (153)
+..|..+|++++|.|+..++..++..+|. +..++..++..++.+++|.|++.+|+.++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 56799999999999999999999988765 7888999999999999999999999888754
No 52
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=99.18 E-value=2.5e-10 Score=79.58 Aligned_cols=133 Identities=22% Similarity=0.338 Sum_probs=100.3
Q ss_pred HHHHHHHHHhhCCCCCCccCHHHHHHHHHHhC-CCC--CHHHHHHHHHHhccCCCCceeHHHHHHHHhcCCCCchHHHHH
Q 031791 15 MDEVRKVFNKFDKNGDGKISADELKDVLRSLG-SKT--SPEEVKRVMDEIDTDGDGYIDFKEFSTFHLAGGSTDGTKELK 91 (153)
Q Consensus 15 ~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~-~~~--~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~ 91 (153)
.+-++.-|..+|+..+|.|+..+|..++-... .+. ....++++-..++.. +..|++.||..++........ +.
T Consensus 317 ~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~l~d---fd 392 (489)
T KOG2643|consen 317 EEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLNNLND---FD 392 (489)
T ss_pred HHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHhhhhH---HH
Confidence 34455568899998889999999999876553 222 234677888888765 456999999998876444333 33
Q ss_pred HHhhhhcCCCCCCccHHHHHHHHHHh-CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHhhc
Q 031791 92 DAFDLYDMDQNGLISANELHAVLKKL-GEKSSLKDCVNMIKKVDADGDGHVNFEEFKKMMTR 152 (153)
Q Consensus 92 ~~f~~~d~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 152 (153)
.+...|- ...+.|+..+|+++.... |..+++..++.+|..+|.|+||.+|.+||+.+|++
T Consensus 393 ~Al~fy~-~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~ 453 (489)
T KOG2643|consen 393 IALRFYH-MAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKR 453 (489)
T ss_pred HHHHHHH-HcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHH
Confidence 3333332 224689999999988864 78899889999999999999999999999999875
No 53
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.17 E-value=1.7e-10 Score=59.12 Aligned_cols=51 Identities=51% Similarity=0.833 Sum_probs=47.2
Q ss_pred CCCccCHHHHHHHHHHhCCC-CCHHHHHHHHHHhccCCCCceeHHHHHHHHh
Q 031791 29 GDGKISADELKDVLRSLGSK-TSPEEVKRVMDEIDTDGDGYIDFKEFSTFHL 79 (153)
Q Consensus 29 ~~g~l~~~e~~~~l~~~~~~-~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~ 79 (153)
++|.|+.++|..++..+|.. ++.+++..++..+|.+++|.|+|.||+.++.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 47999999999999888998 9999999999999999999999999998875
No 54
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.17 E-value=2.9e-10 Score=67.05 Aligned_cols=62 Identities=19% Similarity=0.282 Sum_probs=54.0
Q ss_pred hHHHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHhh
Q 031791 86 GTKELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKVDADGDGHVNFEEFKKMMT 151 (153)
Q Consensus 86 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 151 (153)
....+..+|..+|.+++|.|+.+|+..+. + ...+..+..++..+|.|++|.||++||...+.
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l--~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR--L--DPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH--c--cchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 44778999999999999999999999876 2 24567788999999999999999999998873
No 55
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.14 E-value=7.1e-10 Score=58.07 Aligned_cols=61 Identities=54% Similarity=0.896 Sum_probs=55.5
Q ss_pred HHHHHHhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHH
Q 031791 18 VRKVFNKFDKNGDGKISADELKDVLRSLGSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFH 78 (153)
Q Consensus 18 l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~ 78 (153)
+..+|..+|.+++|.|+..++..++..++...+...+..++..++.+++|.|++.+|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5677999999999999999999999999999999999999999999999999999998765
No 56
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.10 E-value=1.3e-09 Score=61.53 Aligned_cols=69 Identities=26% Similarity=0.497 Sum_probs=58.0
Q ss_pred hhhHHHHHHHHHh-hCCCCCC-ccCHHHHHHHHHHh-----CCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 031791 12 LGSMDEVRKVFNK-FDKNGDG-KISADELKDVLRSL-----GSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLA 80 (153)
Q Consensus 12 ~~~~~~l~~~f~~-~d~~~~g-~l~~~e~~~~l~~~-----~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 80 (153)
+..+..|..+|+. .|.+++| .|+..||..++... +......++..+++.+|.+++|.|+|+||+.++..
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 5568889999999 6677765 99999999999765 33456789999999999999999999999988754
No 57
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=99.06 E-value=2.7e-09 Score=67.33 Aligned_cols=106 Identities=23% Similarity=0.383 Sum_probs=85.4
Q ss_pred CCChhhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhcCC--CCch
Q 031791 9 ANYLGSMDEVRKVFNKFDKNGDGKISADELKDVLRSLGSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLAGG--STDG 86 (153)
Q Consensus 9 ~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~--~~~~ 86 (153)
.+|..+|+.++..|..+|.+.||+|+..|+..++.++|.+-+.--+..++..+|.|.+|+|+|.+|+-++.... ....
T Consensus 92 eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~~ 171 (244)
T KOG0041|consen 92 EFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQE 171 (244)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhcccccc
Confidence 46788899999999999999999999999999999999998888899999999999999999999998887621 1122
Q ss_pred HHHHHHHhhh--hcCCCCCCccHHHHHHHH
Q 031791 87 TKELKDAFDL--YDMDQNGLISANELHAVL 114 (153)
Q Consensus 87 ~~~~~~~f~~--~d~~~~g~i~~~e~~~~l 114 (153)
...+..+-+. .|....|+.....|-..=
T Consensus 172 ds~~~~LAr~~eVDVskeGV~GAknFFeAK 201 (244)
T KOG0041|consen 172 DSGLLRLARLSEVDVSKEGVSGAKNFFEAK 201 (244)
T ss_pred chHHHHHHHhcccchhhhhhhhHHHHHHHH
Confidence 2334444444 688888888777765443
No 58
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.03 E-value=1.2e-08 Score=70.94 Aligned_cols=125 Identities=22% Similarity=0.290 Sum_probs=101.8
Q ss_pred hHHHHHHHHHhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhcCCCCchHHHHHHH
Q 031791 14 SMDEVRKVFNKFDKNGDGKISADELKDVLRSLGSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLAGGSTDGTKELKDA 93 (153)
Q Consensus 14 ~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 93 (153)
..+....+|..+|.+.+|.+++.+|.+.+.. .+.++-.+|...|.+.+|.|+..|.-..+......-..+++..+
T Consensus 49 ~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~-----~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~ 123 (463)
T KOG0036|consen 49 NYEAAKMLFSAMDANRDGRVDYSEFKRYLDN-----KELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKF 123 (463)
T ss_pred chHHHHHHHHhcccCcCCcccHHHHHHHHHH-----hHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHH
Confidence 3456677899999999999999999999864 46778889999999999999999999999987777778999999
Q ss_pred hhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhh------cCCCCCcccHHHHHH
Q 031791 94 FDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKV------DADGDGHVNFEEFKK 148 (153)
Q Consensus 94 f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~------d~~~~g~is~~ef~~ 148 (153)
|+..|+++++.|+.+|.+..+.-. ++..+..++..| |.+.+..|+ ++|..
T Consensus 124 ~e~~d~~g~~~I~~~e~rd~~ll~----p~s~i~di~~~W~h~~~idigE~~~iP-dg~s~ 179 (463)
T KOG0036|consen 124 FEHMDKDGKATIDLEEWRDHLLLY----PESDLEDIYDFWRHVLLIDIGEDAVLP-DGDSK 179 (463)
T ss_pred HHHhccCCCeeeccHHHHhhhhcC----ChhHHHHHHHhhhhheEEEccccccCC-cchHH
Confidence 999999999999999999887642 245566665544 555666666 55544
No 59
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.03 E-value=1.9e-09 Score=60.84 Aligned_cols=64 Identities=19% Similarity=0.407 Sum_probs=54.6
Q ss_pred HHHHHHhhhhcCC--CCCCccHHHHHHHHH-HhCCCCC----HHHHHHHHHhhcCCCCCcccHHHHHHHhh
Q 031791 88 KELKDAFDLYDMD--QNGLISANELHAVLK-KLGEKSS----LKDCVNMIKKVDADGDGHVNFEEFKKMMT 151 (153)
Q Consensus 88 ~~~~~~f~~~d~~--~~g~i~~~e~~~~l~-~~~~~~~----~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 151 (153)
..+...|..|+.. ++|.|+.+||+.++. .++..++ +.++..++..+|.+++|.|+|++|+.++.
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~ 78 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVI 78 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 4567788888865 479999999999997 5555555 89999999999999999999999998875
No 60
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.01 E-value=3.2e-09 Score=62.66 Aligned_cols=61 Identities=31% Similarity=0.442 Sum_probs=28.7
Q ss_pred hHHHHHHHHHhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHH
Q 031791 14 SMDEVRKVFNKFDKNGDGKISADELKDVLRSLGSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFH 78 (153)
Q Consensus 14 ~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~ 78 (153)
....+.-.|..+|.+++|.|+..|+..+. .......+..++..+|.+++|.|++.||..++
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 34444444555555555555555555433 22223444444455555555555555554444
No 61
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.01 E-value=3.1e-09 Score=59.93 Aligned_cols=69 Identities=17% Similarity=0.453 Sum_probs=58.7
Q ss_pred hhhHHHHHHHHHhhCCC--CCCccCHHHHHHHHH-HhCCCCC----HHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 031791 12 LGSMDEVRKVFNKFDKN--GDGKISADELKDVLR-SLGSKTS----PEEVKRVMDEIDTDGDGYIDFKEFSTFHLA 80 (153)
Q Consensus 12 ~~~~~~l~~~f~~~d~~--~~g~l~~~e~~~~l~-~~~~~~~----~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 80 (153)
+..+..+-..|+.++.. ++|.|+..+|..++. .++..++ ..+++.++..+|.+++|.|+|.+|+.++..
T Consensus 4 e~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 4 EKAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 45678888999999865 478999999999996 5555555 899999999999999999999999988764
No 62
>PF14658 EF-hand_9: EF-hand domain
Probab=98.95 E-value=7.2e-09 Score=54.22 Aligned_cols=61 Identities=23% Similarity=0.556 Sum_probs=56.1
Q ss_pred HHHHhhCCCCCCccCHHHHHHHHHHhCC-CCCHHHHHHHHHHhccCCC-CceeHHHHHHHHhc
Q 031791 20 KVFNKFDKNGDGKISADELKDVLRSLGS-KTSPEEVKRVMDEIDTDGD-GYIDFKEFSTFHLA 80 (153)
Q Consensus 20 ~~f~~~d~~~~g~l~~~e~~~~l~~~~~-~~~~~~~~~l~~~~d~~~~-~~i~~~ef~~~~~~ 80 (153)
..|..||+++.|.+...++..+|+.++. .++.++++.+.+.+|+++. |.|++..|+..++.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3689999999999999999999999988 8999999999999999987 99999999988763
No 63
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.93 E-value=1.2e-08 Score=66.58 Aligned_cols=138 Identities=25% Similarity=0.313 Sum_probs=91.9
Q ss_pred hhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHh---CCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhcCCCCch---
Q 031791 13 GSMDEVRKVFNKFDKNGDGKISADELKDVLRSL---GSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLAGGSTDG--- 86 (153)
Q Consensus 13 ~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~---~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~--- 86 (153)
...+.++.+|...|.+.+|+|+..++.+.+..- .+.-+..+....|+..|++++|.|+|.||..-+......+.
T Consensus 98 rsrrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekev 177 (362)
T KOG4251|consen 98 RSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEV 177 (362)
T ss_pred HHHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHH
Confidence 457889999999999999999999999876432 11223345566788899999999999999654332110000
Q ss_pred ---------------------------------------------------------HHHHHHHhhhhcCCCCCCccHHH
Q 031791 87 ---------------------------------------------------------TKELKDAFDLYDMDQNGLISANE 109 (153)
Q Consensus 87 ---------------------------------------------------------~~~~~~~f~~~d~~~~g~i~~~e 109 (153)
..-+..+.+.+|++++..++..|
T Consensus 178 adairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpe 257 (362)
T KOG4251|consen 178 ADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPE 257 (362)
T ss_pred HHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchh
Confidence 01244566777888888888888
Q ss_pred HHHHHHH-----hCCCCCH----HHHHHHHHhhcCCCCCcccHHHHHHHh
Q 031791 110 LHAVLKK-----LGEKSSL----KDCVNMIKKVDADGDGHVNFEEFKKMM 150 (153)
Q Consensus 110 ~~~~l~~-----~~~~~~~----~~~~~~~~~~d~~~~g~is~~ef~~~l 150 (153)
|....-- .|..+.+ ....++=..+|.|.+|.++++++..++
T Consensus 258 FislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~ 307 (362)
T KOG4251|consen 258 FISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYV 307 (362)
T ss_pred hhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhc
Confidence 7654321 1222222 223445556788888988888877653
No 64
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.93 E-value=7.6e-09 Score=65.32 Aligned_cols=77 Identities=36% Similarity=0.614 Sum_probs=66.0
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHh
Q 031791 71 FKEFSTFHLAGGSTDGTKELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKVDADGDGHVNFEEFKKMM 150 (153)
Q Consensus 71 ~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l 150 (153)
|.+|..+-+ ........+|+.||.+.+|+|+..|++.++..+|.+-+---+..+++..|.|.+|+||+.+|+-++
T Consensus 87 yteF~eFsr-----kqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIf 161 (244)
T KOG0041|consen 87 YTEFSEFSR-----KQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIF 161 (244)
T ss_pred hhhhhHHHH-----HHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 677764443 233677889999999999999999999999999988777778999999999999999999999776
Q ss_pred hc
Q 031791 151 TR 152 (153)
Q Consensus 151 ~~ 152 (153)
+.
T Consensus 162 rk 163 (244)
T KOG0041|consen 162 RK 163 (244)
T ss_pred HH
Confidence 53
No 65
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.83 E-value=1.7e-07 Score=65.78 Aligned_cols=130 Identities=24% Similarity=0.390 Sum_probs=90.2
Q ss_pred HHHHHHHhhCCCCCCccCHHHHHHHHHHh------CCC----CC-----HHHHH-H-HHHHhccCCCCceeHHHHHHHHh
Q 031791 17 EVRKVFNKFDKNGDGKISADELKDVLRSL------GSK----TS-----PEEVK-R-VMDEIDTDGDGYIDFKEFSTFHL 79 (153)
Q Consensus 17 ~l~~~f~~~d~~~~g~l~~~e~~~~l~~~------~~~----~~-----~~~~~-~-l~~~~d~~~~~~i~~~ef~~~~~ 79 (153)
.++..|..+|.|++|.|+.+||..+.+.+ |.. .+ ..++. . +...++.++++++++++|+.++.
T Consensus 234 ~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e 313 (489)
T KOG2643|consen 234 NFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQE 313 (489)
T ss_pred cceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHH
Confidence 44566888999999999999999887433 110 00 11111 1 22345788999999999999987
Q ss_pred cCCCCchHHHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHH---HHHHHHHhhcCCCCCcccHHHHHHHhh
Q 031791 80 AGGSTDGTKELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLK---DCVNMIKKVDADGDGHVNFEEFKKMMT 151 (153)
Q Consensus 80 ~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~---~~~~~~~~~d~~~~g~is~~ef~~~l~ 151 (153)
. -..+.+..-|..+|+..+|.|+..+|..++-.+...-++. .+...-+.+... ...||++||..+.+
T Consensus 314 ~----Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~ 383 (489)
T KOG2643|consen 314 N----LQEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFR 383 (489)
T ss_pred H----HHHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHH
Confidence 6 3346677889999999999999999999988765332221 233344445433 55699999987753
No 66
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.73 E-value=7.5e-07 Score=63.72 Aligned_cols=139 Identities=19% Similarity=0.355 Sum_probs=98.8
Q ss_pred ChhhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHh-CCCCCHHHHHHHHH-HhccCCCCceeHHHHHHHHhcCCCCchHH
Q 031791 11 YLGSMDEVRKVFNKFDKNGDGKISADELKDVLRSL-GSKTSPEEVKRVMD-EIDTDGDGYIDFKEFSTFHLAGGSTDGTK 88 (153)
Q Consensus 11 ~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~-~~~~~~~~~~~l~~-~~d~~~~~~i~~~ef~~~~~~~~~~~~~~ 88 (153)
.+++.+.+.-.|...+.++...++.++|......+ +.+....++.++.. ..|..+||-|+|+||..+-...+.++ .
T Consensus 31 ~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~pD--a 108 (694)
T KOG0751|consen 31 DPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCAPD--A 108 (694)
T ss_pred ChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccCch--H
Confidence 34555555555666677888899999999875444 55555555555554 45677899999999988766666553 6
Q ss_pred HHHHHhhhhcCCCCCCccHHHHHHHHHHhCCC-----------------------CC------------HHHHHHHHHhh
Q 031791 89 ELKDAFDLYDMDQNGLISANELHAVLKKLGEK-----------------------SS------------LKDCVNMIKKV 133 (153)
Q Consensus 89 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~-----------------------~~------------~~~~~~~~~~~ 133 (153)
....+|..||..++|.++.+++..++.+.... .+ .+..++.|...
T Consensus 109 l~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qafr~~ 188 (694)
T KOG0751|consen 109 LFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHAEQAFREK 188 (694)
T ss_pred HHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77889999999999999999999999975211 01 12334455666
Q ss_pred cCCCCCcccHHHHHHHhh
Q 031791 134 DADGDGHVNFEEFKKMMT 151 (153)
Q Consensus 134 d~~~~g~is~~ef~~~l~ 151 (153)
|..++|.||--+|...+.
T Consensus 189 d~~~ng~is~Ldfq~imv 206 (694)
T KOG0751|consen 189 DKAKNGFISVLDFQDIMV 206 (694)
T ss_pred cccCCCeeeeechHhhhh
Confidence 777788877777766654
No 67
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.71 E-value=2.7e-07 Score=51.75 Aligned_cols=63 Identities=16% Similarity=0.393 Sum_probs=52.0
Q ss_pred HHHHHHhhhhcCCCCCCccHHHHHHHHHHh-----CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHhh
Q 031791 88 KELKDAFDLYDMDQNGLISANELHAVLKKL-----GEKSSLKDCVNMIKKVDADGDGHVNFEEFKKMMT 151 (153)
Q Consensus 88 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 151 (153)
..+..+|..|. ...+.+++.||+.++..- .....+..++.+++..|.|++|.|+|+||+.++.
T Consensus 8 ~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~ 75 (91)
T cd05024 8 EKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIA 75 (91)
T ss_pred HHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 45667888888 345799999999999863 3345678899999999999999999999998874
No 68
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.70 E-value=1.8e-07 Score=54.14 Aligned_cols=69 Identities=25% Similarity=0.415 Sum_probs=58.8
Q ss_pred CCChhhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 031791 9 ANYLGSMDEVRKVFNKFDKNGDGKISADELKDVLRSLGSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLA 80 (153)
Q Consensus 9 ~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 80 (153)
.+++.+...+..+|..+++ ++|.|+..+...++...++ +.+.+..+|...|.+++|.+++.||+..+..
T Consensus 3 ~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L--~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 3 KLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSGL--PRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp --SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTS--SHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCC--CHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 4789999999999999985 6899999999999887654 4799999999999999999999999887653
No 69
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.67 E-value=4.1e-08 Score=43.29 Aligned_cols=25 Identities=36% Similarity=0.639 Sum_probs=11.0
Q ss_pred HHHhhhhcCCCCCCccHHHHHHHHH
Q 031791 91 KDAFDLYDMDQNGLISANELHAVLK 115 (153)
Q Consensus 91 ~~~f~~~d~~~~g~i~~~e~~~~l~ 115 (153)
..+|+.+|++++|.|+.+||..+++
T Consensus 3 ~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 3 KEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 3344444444444444444444443
No 70
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.67 E-value=2.9e-07 Score=55.94 Aligned_cols=86 Identities=14% Similarity=0.238 Sum_probs=40.7
Q ss_pred CCccCHHHHHHHHHHh-CCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhcCCCCchHHHHHHHhhhhcCCCCCCccHH
Q 031791 30 DGKISADELKDVLRSL-GSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLAGGSTDGTKELKDAFDLYDMDQNGLISAN 108 (153)
Q Consensus 30 ~g~l~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ 108 (153)
.|-|+..-|..++... ...-+++.+-..|..+|.++.|.|.-..+..++......-..+.+..+|+.+-.+..|.+++.
T Consensus 78 ~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~ 157 (171)
T KOG0031|consen 78 PGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYK 157 (171)
T ss_pred CCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHH
Confidence 4445555555444222 222234444445555555555555555554444444333334455555555555555555555
Q ss_pred HHHHHHH
Q 031791 109 ELHAVLK 115 (153)
Q Consensus 109 e~~~~l~ 115 (153)
.|..++.
T Consensus 158 ~~~~~it 164 (171)
T KOG0031|consen 158 AFTYIIT 164 (171)
T ss_pred HHHHHHH
Confidence 5555444
No 71
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.67 E-value=5.5e-07 Score=50.50 Aligned_cols=68 Identities=24% Similarity=0.493 Sum_probs=55.6
Q ss_pred hhhHHHHHHHHHhhCCCCCCccCHHHHHHHHHH-----hCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 031791 12 LGSMDEVRKVFNKFDKNGDGKISADELKDVLRS-----LGSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLA 80 (153)
Q Consensus 12 ~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~-----~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 80 (153)
+..+..|-.+|+.+. .+.+.|+..||..++.. +.....+..++.++..+|.+++|.|+|.||+.++..
T Consensus 4 E~ai~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 4 EHSMEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 456778889999997 44679999999999842 233456788999999999999999999999998765
No 72
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.66 E-value=4.5e-08 Score=43.18 Aligned_cols=28 Identities=43% Similarity=0.886 Sum_probs=25.7
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHhhc
Q 031791 125 DCVNMIKKVDADGDGHVNFEEFKKMMTR 152 (153)
Q Consensus 125 ~~~~~~~~~d~~~~g~is~~ef~~~l~~ 152 (153)
++..+|+.+|.|++|.|+++||..++++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 5788999999999999999999999874
No 73
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.61 E-value=1.6e-06 Score=51.86 Aligned_cols=102 Identities=19% Similarity=0.269 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHhccCCCCceeHHHHHHHHhcCCCCchHHHHHHHhhhhcCC--CCCCccHHHHHHHHHHhCC---CCCHH
Q 031791 50 SPEEVKRVMDEIDTDGDGYIDFKEFSTFHLAGGSTDGTKELKDAFDLYDMD--QNGLISANELHAVLKKLGE---KSSLK 124 (153)
Q Consensus 50 ~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~--~~g~i~~~e~~~~l~~~~~---~~~~~ 124 (153)
...++..+|..+|..++++|++.+.-.+++.....+....+......++++ +--.|+.++|.-++.+++. ..+-+
T Consensus 9 ~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~e 88 (152)
T KOG0030|consen 9 QMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYE 88 (152)
T ss_pred hHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHH
Confidence 347888999999999999999999999988877777777888888888776 4468999999999988753 34556
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHhh
Q 031791 125 DCVNMIKKVDADGDGHVNFEEFKKMMT 151 (153)
Q Consensus 125 ~~~~~~~~~d~~~~g~is~~ef~~~l~ 151 (153)
++-+-++.+|..++|.|...++..+|.
T Consensus 89 dfvegLrvFDkeg~G~i~~aeLRhvLt 115 (152)
T KOG0030|consen 89 DFVEGLRVFDKEGNGTIMGAELRHVLT 115 (152)
T ss_pred HHHHHHHhhcccCCcceeHHHHHHHHH
Confidence 677778899999999999999988764
No 74
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.55 E-value=1.4e-07 Score=42.40 Aligned_cols=30 Identities=43% Similarity=0.884 Sum_probs=23.3
Q ss_pred HHHHHhhhhcCCCCCCccHHHHHHHHH-HhC
Q 031791 89 ELKDAFDLYDMDQNGLISANELHAVLK-KLG 118 (153)
Q Consensus 89 ~~~~~f~~~d~~~~g~i~~~e~~~~l~-~~~ 118 (153)
++..+|+.+|.+++|.|+.+||+.+++ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 357788888888888888888888888 454
No 75
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.49 E-value=1.6e-06 Score=50.26 Aligned_cols=64 Identities=27% Similarity=0.421 Sum_probs=53.6
Q ss_pred chHHHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHhh
Q 031791 85 DGTKELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKVDADGDGHVNFEEFKKMMT 151 (153)
Q Consensus 85 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 151 (153)
........+|...++ ++|.|+.++.+.++...+ ++.+.+..||...|.+++|.++++||.-+|.
T Consensus 7 ~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 7 EEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp CHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 445778888998885 579999999999998776 7778999999999999999999999987653
No 76
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.44 E-value=3.3e-06 Score=59.97 Aligned_cols=133 Identities=20% Similarity=0.312 Sum_probs=100.7
Q ss_pred HHHHHHHHHhhCCCCCCccCHHHHHHH--HHHhC------------CCCCHHHHHHH---HHHhccCCCCceeHHHHHHH
Q 031791 15 MDEVRKVFNKFDKNGDGKISADELKDV--LRSLG------------SKTSPEEVKRV---MDEIDTDGDGYIDFKEFSTF 77 (153)
Q Consensus 15 ~~~l~~~f~~~d~~~~g~l~~~e~~~~--l~~~~------------~~~~~~~~~~l---~~~~d~~~~~~i~~~ef~~~ 77 (153)
.-.+.++|..+++..+|.|+..++.+- +..+- .-.+-+....+ |..+|.+.+|.|+.+++..+
T Consensus 224 ~tvi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry 303 (493)
T KOG2562|consen 224 ETVIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRY 303 (493)
T ss_pred HHHhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHH
Confidence 456788899999999999999987753 22221 11223333334 66779999999999998777
Q ss_pred HhcCCCCchHHHHHHHhh----hhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHh
Q 031791 78 HLAGGSTDGTKELKDAFD----LYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKVDADGDGHVNFEEFKKMM 150 (153)
Q Consensus 78 ~~~~~~~~~~~~~~~~f~----~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l 150 (153)
.-.... ...+..+|. .+-...+|.+++++|.-++-++...-++.-++.+|+-+|.+++|.|+..|...+.
T Consensus 304 ~d~tlt---~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fy 377 (493)
T KOG2562|consen 304 GDHTLT---ERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFY 377 (493)
T ss_pred hccchh---hHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHH
Confidence 654332 356777887 4455678999999999999999888888899999999999999999988876554
No 77
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.42 E-value=5.5e-07 Score=61.16 Aligned_cols=99 Identities=12% Similarity=0.184 Sum_probs=81.4
Q ss_pred HHHHHHHHHhccCCCCceeHHHHHHHHhcCC-CCchHHHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHH
Q 031791 52 EEVKRVMDEIDTDGDGYIDFKEFSTFHLAGG-STDGTKELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMI 130 (153)
Q Consensus 52 ~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~-~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 130 (153)
..+..+|..||.+++|.++|.+.+..+...+ .+.....++.+|++|+.+.+|.+...+|.-+|+... ...+-.+.-+|
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~l-gv~~l~v~~lf 337 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVL-GVEVLRVPVLF 337 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhc-Ccceeeccccc
Confidence 5677789999999999999999988887754 344557789999999999999999999988888642 12333466788
Q ss_pred HhhcCCCCCcccHHHHHHHhh
Q 031791 131 KKVDADGDGHVNFEEFKKMMT 151 (153)
Q Consensus 131 ~~~d~~~~g~is~~ef~~~l~ 151 (153)
...+...+|+|++++|.+++.
T Consensus 338 ~~i~q~d~~ki~~~~f~~fa~ 358 (412)
T KOG4666|consen 338 PSIEQKDDPKIYASNFRKFAA 358 (412)
T ss_pred hhhhcccCcceeHHHHHHHHH
Confidence 999999999999999998865
No 78
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.42 E-value=1.6e-05 Score=59.70 Aligned_cols=138 Identities=21% Similarity=0.372 Sum_probs=112.4
Q ss_pred ChhhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhcCCCCchHHHH
Q 031791 11 YLGSMDEVRKVFNKFDKNGDGKISADELKDVLRSLGSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLAGGSTDGTKEL 90 (153)
Q Consensus 11 ~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~ 90 (153)
......-+..+|+.+|++++|.++..+...+++.+...+....+..+|+..+....+++...+|..+........ .+
T Consensus 131 ~~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev 207 (746)
T KOG0169|consen 131 RSRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EV 207 (746)
T ss_pred cchHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hH
Confidence 344556778899999999999999999999999999999999999999999888899999999998877644333 56
Q ss_pred HHHhhhhcCCCCCCccHHHHHHHHHHhC--CCCCHHHHHHHHHhhcCC----CCCcccHHHHHHHhhc
Q 031791 91 KDAFDLYDMDQNGLISANELHAVLKKLG--EKSSLKDCVNMIKKVDAD----GDGHVNFEEFKKMMTR 152 (153)
Q Consensus 91 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~--~~~~~~~~~~~~~~~d~~----~~g~is~~ef~~~l~~ 152 (153)
..+|..+-.+ .+.++..++..++.... ...+...+++|++.+.+. ..+.++++.|..+|..
T Consensus 208 ~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S 274 (746)
T KOG0169|consen 208 YFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFS 274 (746)
T ss_pred HHHHHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcC
Confidence 7777777655 89999999999999874 346677888888777443 3466999999998853
No 79
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.39 E-value=1.4e-06 Score=61.83 Aligned_cols=56 Identities=25% Similarity=0.439 Sum_probs=48.3
Q ss_pred CchHHHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHhhc
Q 031791 84 TDGTKELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKVDADGDGHVNFEEFKKMMTR 152 (153)
Q Consensus 84 ~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 152 (153)
......+..+|+.+|.+++|.|+.+||.. +..+|..+|.|++|.|+++||...+..
T Consensus 330 ~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 330 EAFTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred ChhhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 44446788999999999999999999942 577899999999999999999998753
No 80
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.37 E-value=6.7e-07 Score=40.14 Aligned_cols=30 Identities=53% Similarity=0.953 Sum_probs=24.0
Q ss_pred HHHHHHHhhCCCCCCccCHHHHHHHHH-HhC
Q 031791 17 EVRKVFNKFDKNGDGKISADELKDVLR-SLG 46 (153)
Q Consensus 17 ~l~~~f~~~d~~~~g~l~~~e~~~~l~-~~~ 46 (153)
+++.+|..+|.+++|.|+.+||..++. .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 367889999999999999999999887 454
No 81
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.36 E-value=2.5e-06 Score=42.23 Aligned_cols=47 Identities=19% Similarity=0.316 Sum_probs=35.1
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHhh
Q 031791 105 ISANELHAVLKKLGEKSSLKDCVNMIKKVDADGDGHVNFEEFKKMMT 151 (153)
Q Consensus 105 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 151 (153)
++..|++.+|+.+...+++.-+..+|+.+|.+++|.+..+||..+++
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 57788888888888888888888888888888888888888888765
No 82
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.33 E-value=4.4e-06 Score=50.47 Aligned_cols=97 Identities=20% Similarity=0.346 Sum_probs=72.1
Q ss_pred HHHHhhCCCCCCccCHHHHHHHHHHhCCC-CCHHHHHHHHHHhccCCCCceeHHHHHHHHhcCC-CCchHHH----HHHH
Q 031791 20 KVFNKFDKNGDGKISADELKDVLRSLGSK-TSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLAGG-STDGTKE----LKDA 93 (153)
Q Consensus 20 ~~f~~~d~~~~g~l~~~e~~~~l~~~~~~-~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~-~~~~~~~----~~~~ 93 (153)
++...+..+|.|.++.++|..++..+.-. +..-.+...|+.+|-++++.|.-.++...+.... ..-..+. ...+
T Consensus 75 ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekv 154 (189)
T KOG0038|consen 75 RICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKV 154 (189)
T ss_pred HHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 44566778999999999999998766433 3333556678889999999999999887776622 2222233 4456
Q ss_pred hhhhcCCCCCCccHHHHHHHHHH
Q 031791 94 FDLYDMDQNGLISANELHAVLKK 116 (153)
Q Consensus 94 f~~~d~~~~g~i~~~e~~~~l~~ 116 (153)
..-.|.||+|.++..||..++..
T Consensus 155 ieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 155 IEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred HHHhcCCCCCcccHHHHHHHHHh
Confidence 66779999999999999988775
No 83
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.32 E-value=3.6e-06 Score=41.70 Aligned_cols=47 Identities=23% Similarity=0.408 Sum_probs=35.7
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHh
Q 031791 33 ISADELKDVLRSLGSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHL 79 (153)
Q Consensus 33 l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~ 79 (153)
++..|+..+|+.++..+....+..+|+.+|.+++|.+.-.||..++.
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 67788888888888888888888888888888888888888887765
No 84
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.32 E-value=3.6e-06 Score=60.35 Aligned_cols=60 Identities=18% Similarity=0.261 Sum_probs=44.1
Q ss_pred HHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhc-CCCCCcccHHHHH
Q 031791 88 KELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKVD-ADGDGHVNFEEFK 147 (153)
Q Consensus 88 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d-~~~~g~is~~ef~ 147 (153)
+....+|+..|+.++|.|+.-+|+.++-.....+....++..+-... .+....+|+..|.
T Consensus 179 E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~yf~ 239 (694)
T KOG0751|consen 179 EHAEQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFSYFN 239 (694)
T ss_pred HHHHHHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchHHHH
Confidence 34567899999999999999999999988776666667776665553 3334457766554
No 85
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.31 E-value=2e-06 Score=68.58 Aligned_cols=65 Identities=23% Similarity=0.470 Sum_probs=58.2
Q ss_pred HHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCC-------HHHHHHHHHhhcCCCCCcccHHHHHHHhhc
Q 031791 88 KELKDAFDLYDMDQNGLISANELHAVLKKLGEKSS-------LKDCVNMIKKVDADGDGHVNFEEFKKMMTR 152 (153)
Q Consensus 88 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~-------~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 152 (153)
..+..+|+.||.+.+|.++.++|+.+|+.+|+.++ +.++++++...||+.+|.|+..+|+.+|..
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~ 2324 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMIS 2324 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHh
Confidence 45778999999999999999999999999997652 347999999999999999999999999864
No 86
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.28 E-value=6.6e-06 Score=58.49 Aligned_cols=59 Identities=27% Similarity=0.492 Sum_probs=52.3
Q ss_pred CCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhcCCCCchHHHHHHHhhhhcCCCCCCccHHHHHHHHHHh
Q 031791 46 GSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLAGGSTDGTKELKDAFDLYDMDQNGLISANELHAVLKKL 117 (153)
Q Consensus 46 ~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 117 (153)
|.......+..+|+.+|.+++|.|+..||+. ...+|..+|.+++|.|+.+||...+...
T Consensus 328 ~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred ccChhhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 5667788999999999999999999999952 4678999999999999999999988754
No 87
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.27 E-value=5.8e-06 Score=58.63 Aligned_cols=65 Identities=22% Similarity=0.345 Sum_probs=31.7
Q ss_pred HHHHHHHHHhccCCCCceeHHHHHHHHhc----CCCCchHHHHHHHhhhhcCCCCCCccHHHHHHHHHH
Q 031791 52 EEVKRVMDEIDTDGDGYIDFKEFSTFHLA----GGSTDGTKELKDAFDLYDMDQNGLISANELHAVLKK 116 (153)
Q Consensus 52 ~~~~~l~~~~d~~~~~~i~~~ef~~~~~~----~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~ 116 (153)
+.+..+|+.+|.|..|.|+.+||...+.. ....-....+..+.+..|-+++|.|+..||...++-
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 33444555555555555555555544332 222223344455555555555555555555555443
No 88
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.23 E-value=1.7e-06 Score=36.68 Aligned_cols=21 Identities=43% Similarity=0.699 Sum_probs=10.7
Q ss_pred HHhhhhcCCCCCCccHHHHHH
Q 031791 92 DAFDLYDMDQNGLISANELHA 112 (153)
Q Consensus 92 ~~f~~~d~~~~g~i~~~e~~~ 112 (153)
.+|..+|.+++|.|+.+|+.+
T Consensus 3 ~~F~~~D~d~DG~is~~E~~~ 23 (25)
T PF13202_consen 3 DAFQQFDTDGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHHTTTSSSEEEHHHHHH
T ss_pred HHHHHHcCCCCCcCCHHHHHH
Confidence 345555555555555555544
No 89
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=98.22 E-value=8.5e-06 Score=58.81 Aligned_cols=78 Identities=26% Similarity=0.421 Sum_probs=68.7
Q ss_pred CCCCCCCCChhhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHhCCCC---CHHHHHHHHHHhccCCCCceeHHHHHHHHh
Q 031791 3 ANNSNGANYLGSMDEVRKVFNKFDKNGDGKISADELKDVLRSLGSKT---SPEEVKRVMDEIDTDGDGYIDFKEFSTFHL 79 (153)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~---~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~ 79 (153)
......++++.+...+...|...| +++|+++..++..++...+... ..++++.++...+.+.+|+|+|++|+..+.
T Consensus 6 ~~~~~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 6 DPWLQSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFL 84 (627)
T ss_pred chhhcccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHH
Confidence 345677899999999999999999 9999999999999998886653 478999999999999999999999999766
Q ss_pred cC
Q 031791 80 AG 81 (153)
Q Consensus 80 ~~ 81 (153)
..
T Consensus 85 ~l 86 (627)
T KOG0046|consen 85 NL 86 (627)
T ss_pred hh
Confidence 53
No 90
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.15 E-value=1.2e-06 Score=51.61 Aligned_cols=64 Identities=16% Similarity=0.335 Sum_probs=47.3
Q ss_pred CCchHHHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHH
Q 031791 83 STDGTKELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKVDADGDGHVNFEEFKK 148 (153)
Q Consensus 83 ~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~ 148 (153)
.......+...|..+|.+++|.|+..|+..+...+ ...+..+..++..+|.|++|.||+.|+..
T Consensus 49 ~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 49 YSECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 34555778888999999999999999998776655 34556788999999999999999999875
No 91
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.00016 Score=54.80 Aligned_cols=137 Identities=21% Similarity=0.328 Sum_probs=102.3
Q ss_pred CCChhhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhc--------
Q 031791 9 ANYLGSMDEVRKVFNKFDKNGDGKISADELKDVLRSLGSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLA-------- 80 (153)
Q Consensus 9 ~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~-------- 80 (153)
..+.++...--..|..+. .+.|+|+-.+-..++...+++ ...+-+++...|.|+||+++..||...|..
T Consensus 9 avT~~Er~K~~~qF~~Lk-p~~gfitg~qArnfflqS~LP--~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkLqG~ 85 (1118)
T KOG1029|consen 9 AVTDEERQKHDAQFGQLK-PGQGFITGDQARNFFLQSGLP--TPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQGI 85 (1118)
T ss_pred ccchHHHHHHHHHHhccC-CCCCccchHhhhhhHHhcCCC--hHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHhcCC
Confidence 456666666667777663 467888888888777665544 567777888888888888888888655331
Q ss_pred --------------------------------------------------------------------------------
Q 031791 81 -------------------------------------------------------------------------------- 80 (153)
Q Consensus 81 -------------------------------------------------------------------------------- 80 (153)
T Consensus 86 ~lP~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~spl 165 (1118)
T KOG1029|consen 86 QLPPVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSPL 165 (1118)
T ss_pred cCCCCCChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCCC
Confidence
Q ss_pred ----------------------CCCCchHHHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCC
Q 031791 81 ----------------------GGSTDGTKELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKVDADGD 138 (153)
Q Consensus 81 ----------------------~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~ 138 (153)
..+....-+...+|..+|+..+|+++-..-+.+|-..+ ++...+..|+..-|.|+|
T Consensus 166 ~~~ss~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~D 243 (1118)
T KOG1029|consen 166 PHDSSVSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGD 243 (1118)
T ss_pred CCCcchhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCC
Confidence 00000012456789999999999999999999888766 667789999999999999
Q ss_pred CcccHHHHHHHh
Q 031791 139 GHVNFEEFKKMM 150 (153)
Q Consensus 139 g~is~~ef~~~l 150 (153)
|+++-+||.-.|
T Consensus 244 GkL~~dEfilam 255 (1118)
T KOG1029|consen 244 GKLSADEFILAM 255 (1118)
T ss_pred CcccHHHHHHHH
Confidence 999999998655
No 92
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.12 E-value=5.5e-06 Score=35.12 Aligned_cols=25 Identities=36% Similarity=0.862 Sum_probs=22.1
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHh
Q 031791 126 CVNMIKKVDADGDGHVNFEEFKKMM 150 (153)
Q Consensus 126 ~~~~~~~~d~~~~g~is~~ef~~~l 150 (153)
++.+|..+|.|++|.||.+||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999999864
No 93
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.10 E-value=5e-05 Score=55.82 Aligned_cols=141 Identities=18% Similarity=0.281 Sum_probs=96.6
Q ss_pred CCCCCCChhhHHHHHHHHHhhCCCCCCccCHHHHHHHH-HHhCCCCCHHHHHHHHHHhccCC-----CCceeHHHHHHHH
Q 031791 5 NSNGANYLGSMDEVRKVFNKFDKNGDGKISADELKDVL-RSLGSKTSPEEVKRVMDEIDTDG-----DGYIDFKEFSTFH 78 (153)
Q Consensus 5 ~~~~~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l-~~~~~~~~~~~~~~l~~~~d~~~-----~~~i~~~ef~~~~ 78 (153)
+..+.+.+.-++.+.++|...|.+.+|.++-.|+...- .+++.++...++..+-...+..- ...++..-|+.+.
T Consensus 184 a~~qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~ 263 (625)
T KOG1707|consen 184 AEEQELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLN 263 (625)
T ss_pred cccccccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHH
Confidence 45677888899999999999999999999999998875 45577888877777666654321 2334455554432
Q ss_pred hc------------------------------------------CCCCchHHHHHHHhhhhcCCCCCCccHHHHHHHHHH
Q 031791 79 LA------------------------------------------GGSTDGTKELKDAFDLYDMDQNGLISANELHAVLKK 116 (153)
Q Consensus 79 ~~------------------------------------------~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~ 116 (153)
.. ...+.-.+.+..+|..||.|++|.++..|+..++..
T Consensus 264 ~lfiergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~ 343 (625)
T KOG1707|consen 264 TLFIERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFST 343 (625)
T ss_pred HHHHHhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhh
Confidence 11 111222367889999999999999999999999998
Q ss_pred hCCCCCH--HHHHHHHHhhcCCCCCcccHHHHHHH
Q 031791 117 LGEKSSL--KDCVNMIKKVDADGDGHVNFEEFKKM 149 (153)
Q Consensus 117 ~~~~~~~--~~~~~~~~~~d~~~~g~is~~ef~~~ 149 (153)
......- ...+. --.+..|.++|+-|+..
T Consensus 344 ~P~~pW~~~~~~~~----t~~~~~G~ltl~g~l~~ 374 (625)
T KOG1707|consen 344 APGSPWTSSPYKDS----TVKNERGWLTLNGFLSQ 374 (625)
T ss_pred CCCCCCCCCccccc----ceecccceeehhhHHHH
Confidence 7543310 00000 01235778888877654
No 94
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.99 E-value=4e-06 Score=49.43 Aligned_cols=63 Identities=19% Similarity=0.231 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHhccCCCCceeHHHHHHHHhcCCCCchHHHHHHHhhhhcCCCCCCccHHHHHH
Q 031791 48 KTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLAGGSTDGTKELKDAFDLYDMDQNGLISANELHA 112 (153)
Q Consensus 48 ~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~ 112 (153)
..-...+.-.|..+|.+++|.++..|+..+..... ....-+...|..+|.+++|.|+..|...
T Consensus 50 ~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~--~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 50 SECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLM--PPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTS--TTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHh--hhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 33455566667777777777777777655544332 2223456667777777777777776543
No 95
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.84 E-value=7.5e-05 Score=51.14 Aligned_cols=102 Identities=16% Similarity=0.140 Sum_probs=85.0
Q ss_pred HHHHHHHHHhhCCCCCCccCHHHHHHHHHHh-CCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhcCCCCchHHHHHHH
Q 031791 15 MDEVRKVFNKFDKNGDGKISADELKDVLRSL-GSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLAGGSTDGTKELKDA 93 (153)
Q Consensus 15 ~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 93 (153)
-..+...|..+|.+++|.+++.+-...+.-+ +.+.+...++-.|..++.+.||.+.-.+|..+++.... ...-.+.-+
T Consensus 258 sd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lg-v~~l~v~~l 336 (412)
T KOG4666|consen 258 SDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLG-VEVLRVPVL 336 (412)
T ss_pred hhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcC-cceeecccc
Confidence 3677889999999999999999988777655 66778889999999999999999999888887776332 223456778
Q ss_pred hhhhcCCCCCCccHHHHHHHHHHh
Q 031791 94 FDLYDMDQNGLISANELHAVLKKL 117 (153)
Q Consensus 94 f~~~d~~~~g~i~~~e~~~~l~~~ 117 (153)
|...+...+|.|+.++|+++....
T Consensus 337 f~~i~q~d~~ki~~~~f~~fa~~~ 360 (412)
T KOG4666|consen 337 FPSIEQKDDPKIYASNFRKFAATE 360 (412)
T ss_pred chhhhcccCcceeHHHHHHHHHhC
Confidence 999999999999999999998864
No 96
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=0.00044 Score=40.24 Aligned_cols=62 Identities=27% Similarity=0.427 Sum_probs=47.4
Q ss_pred HHHHHHhhhhcCCCCCCccHHHHHHHHHHh------CC----CCCHHHHHHHH----HhhcCCCCCcccHHHHHHH
Q 031791 88 KELKDAFDLYDMDQNGLISANELHAVLKKL------GE----KSSLKDCVNMI----KKVDADGDGHVNFEEFKKM 149 (153)
Q Consensus 88 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~------~~----~~~~~~~~~~~----~~~d~~~~g~is~~ef~~~ 149 (153)
+.--..|.+.|.+++|.++--|+.+.+... |. -.++.+++.++ +.-|.|++|.|+|.||++.
T Consensus 67 qlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 67 QLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred HHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 334457899999999999999999998865 21 23556665555 4458899999999999875
No 97
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.69 E-value=0.00023 Score=39.55 Aligned_cols=62 Identities=19% Similarity=0.453 Sum_probs=46.8
Q ss_pred HHHHhhhhcCCCCCCccHHHHHHHHHHhC-C-CCCHHHHHHHHHhhcCC----CCCcccHHHHHHHhhc
Q 031791 90 LKDAFDLYDMDQNGLISANELHAVLKKLG-E-KSSLKDCVNMIKKVDAD----GDGHVNFEEFKKMMTR 152 (153)
Q Consensus 90 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~-~~~~~~~~~~~~~~d~~----~~g~is~~ef~~~l~~ 152 (153)
+..+|..+.. +.+.|+.++|..+|+... . ..+...+..++..+.++ ..+.+|++.|..+|..
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 5677888855 678888888888887653 2 45788888888887554 3688999999988864
No 98
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.64 E-value=0.0001 Score=48.61 Aligned_cols=66 Identities=20% Similarity=0.308 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHhcCCCC---chHHHHHHHhhhhcCCCCCCccHHHHHHHHHH
Q 031791 51 PEEVKRVMDEIDTDGDGYIDFKEFSTFHLAGGST---DGTKELKDAFDLYDMDQNGLISANELHAVLKK 116 (153)
Q Consensus 51 ~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~---~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~ 116 (153)
...+..+|...|.+.+++|+-.|...++...... ...+.-...|+..|++++|.|+++|++--+.+
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFla 168 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLA 168 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHh
Confidence 4567889999999999999999988876642111 11134456799999999999999999766554
No 99
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.61 E-value=0.00035 Score=50.82 Aligned_cols=63 Identities=33% Similarity=0.546 Sum_probs=54.0
Q ss_pred HHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCC---CHHHHHHHHHhhcCCCCCcccHHHHHHHhh
Q 031791 88 KELKDAFDLYDMDQNGLISANELHAVLKKLGEKS---SLKDCVNMIKKVDADGDGHVNFEEFKKMMT 151 (153)
Q Consensus 88 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~---~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 151 (153)
..+...|...| +++|+|+..++...+...+... ..+++.+++...+.+.+|+|+|++|+..+.
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFL 84 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHH
Confidence 45677899999 9999999999999999876443 468899999999999999999999998654
No 100
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=97.54 E-value=0.0022 Score=40.30 Aligned_cols=133 Identities=16% Similarity=0.177 Sum_probs=83.9
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcc---CCCCceeHHHHHHHHhc------------
Q 031791 16 DEVRKVFNKFDKNGDGKISADELKDVLRSLGSKTSPEEVKRVMDEIDT---DGDGYIDFKEFSTFHLA------------ 80 (153)
Q Consensus 16 ~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~---~~~~~i~~~ef~~~~~~------------ 80 (153)
..|.+-..-+|+|+||.|...|-...++.+|+...-..+-.++-...- ...+-+.-.-|..++..
T Consensus 7 T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~ 86 (174)
T PF05042_consen 7 TVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGA 86 (174)
T ss_pred cHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccc
Confidence 345566667899999999999999999999988654443332222110 11122221112111111
Q ss_pred ---CCCCchHHHHHHHhhhhcCCCCCCccHHHHHHHHHHhCC-------CCCHHHHHHHHHhhcCCCCCcccHHHHHHHh
Q 031791 81 ---GGSTDGTKELKDAFDLYDMDQNGLISANELHAVLKKLGE-------KSSLKDCVNMIKKVDADGDGHVNFEEFKKMM 150 (153)
Q Consensus 81 ---~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~-------~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l 150 (153)
..+.. .++++.+|..++..+.+.+|..|+..+++.-.. ..+.-|...++... .+.+|.++.++...++
T Consensus 87 YD~eGrFv-p~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 87 YDTEGRFV-PQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVY 164 (174)
T ss_pred cccCCcCC-HHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhc
Confidence 11122 278999999999988899999999999997422 22334444444444 5679999988876543
No 101
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.43 E-value=0.00021 Score=30.47 Aligned_cols=25 Identities=40% Similarity=0.848 Sum_probs=13.7
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHhh
Q 031791 127 VNMIKKVDADGDGHVNFEEFKKMMT 151 (153)
Q Consensus 127 ~~~~~~~d~~~~g~is~~ef~~~l~ 151 (153)
..+|..+|.+++|.|++.+|..+++
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 4455555555555555555555543
No 102
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.33 E-value=0.00048 Score=29.26 Aligned_cols=27 Identities=44% Similarity=0.733 Sum_probs=17.6
Q ss_pred HHHHhhhhcCCCCCCccHHHHHHHHHH
Q 031791 90 LKDAFDLYDMDQNGLISANELHAVLKK 116 (153)
Q Consensus 90 ~~~~f~~~d~~~~g~i~~~e~~~~l~~ 116 (153)
+..+|..+|.+++|.|+..+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 345666677777777777777666653
No 103
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.28 E-value=0.0017 Score=36.07 Aligned_cols=62 Identities=21% Similarity=0.569 Sum_probs=48.5
Q ss_pred HHHHHHhhCCCCCCccCHHHHHHHHHHh-CC-CCCHHHHHHHHHHhccC----CCCceeHHHHHHHHhc
Q 031791 18 VRKVFNKFDKNGDGKISADELKDVLRSL-GS-KTSPEEVKRVMDEIDTD----GDGYIDFKEFSTFHLA 80 (153)
Q Consensus 18 l~~~f~~~d~~~~g~l~~~e~~~~l~~~-~~-~~~~~~~~~l~~~~d~~----~~~~i~~~ef~~~~~~ 80 (153)
|..+|..+.. +.+.|+.++|...|+.- +. ..+...+..++..+.++ ..+.+++..|..++..
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 5678888855 78889999999999765 33 46788899998888544 3578999999998876
No 104
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=0.0032 Score=36.74 Aligned_cols=68 Identities=25% Similarity=0.373 Sum_probs=45.2
Q ss_pred CCCCChhhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHh------CC-C---CCHHHHHHHHHH----hccCCCCceeHH
Q 031791 7 NGANYLGSMDEVRKVFNKFDKNGDGKISADELKDVLRSL------GS-K---TSPEEVKRVMDE----IDTDGDGYIDFK 72 (153)
Q Consensus 7 ~~~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~------~~-~---~~~~~~~~l~~~----~d~~~~~~i~~~ 72 (153)
...+++++.+ ..+|...|-++++.|+--|+.+++... |. + +++.++..++.. -|.+++|.|+|-
T Consensus 60 ~a~mtpeqlq--fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYg 137 (144)
T KOG4065|consen 60 VAKMTPEQLQ--FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYG 137 (144)
T ss_pred hhhCCHHHHh--hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHH
Confidence 4556666554 356888899999999999999888644 22 1 234455444443 366778888888
Q ss_pred HHHH
Q 031791 73 EFST 76 (153)
Q Consensus 73 ef~~ 76 (153)
||+.
T Consensus 138 EflK 141 (144)
T KOG4065|consen 138 EFLK 141 (144)
T ss_pred HHHh
Confidence 8764
No 105
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=96.83 E-value=0.0075 Score=45.30 Aligned_cols=104 Identities=17% Similarity=0.205 Sum_probs=76.5
Q ss_pred CCCCCChhhHHHHHHHHHhh-----------CCCCC---CccCHHHHHHHHHHhCC-CCCHHHHHHHHHHhccCCCCcee
Q 031791 6 SNGANYLGSMDEVRKVFNKF-----------DKNGD---GKISADELKDVLRSLGS-KTSPEEVKRVMDEIDTDGDGYID 70 (153)
Q Consensus 6 ~~~~~~~~~~~~l~~~f~~~-----------d~~~~---g~l~~~e~~~~l~~~~~-~~~~~~~~~l~~~~d~~~~~~i~ 70 (153)
....++..+...++.+|..- |++-. .+++..+|..+++.+.. ..+..-+.++|+..|.+.+|.++
T Consensus 494 ~~~~lt~~dL~~lYd~f~~e~~~~~~~~~~~~p~~~~~eqyi~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Lt 573 (671)
T KOG4347|consen 494 QTTSLTNTDLENLYDLFKEEHLTNSIGLGRSDPDFEAFEQYIDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLT 573 (671)
T ss_pred ccCccCHHHHHHHHHHHHHHHhccCcccCCCCCCchHHHHHHHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeE
Confidence 34567788888888887543 11111 12444555555554422 23445678899999999999999
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHhhhhcCCCCCCccHHHH
Q 031791 71 FKEFSTFHLAGGSTDGTKELKDAFDLYDMDQNGLISANEL 110 (153)
Q Consensus 71 ~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~ 110 (153)
+.+++..+.........+++..+|+++|++++ ..+.+++
T Consensus 574 f~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 574 FKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 99999999988888888999999999999999 8888888
No 106
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=96.81 E-value=0.0099 Score=37.45 Aligned_cols=33 Identities=12% Similarity=0.213 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHhhcC
Q 031791 121 SSLKDCVNMIKKVDADGDGHVNFEEFKKMMTRS 153 (153)
Q Consensus 121 ~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~~ 153 (153)
..++.+++||..++....+.+|+.|..++++.|
T Consensus 93 Fvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~n 125 (174)
T PF05042_consen 93 FVPQKFEEIFSKYAKTGPDALTLRELWRMLKGN 125 (174)
T ss_pred CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhc
Confidence 446789999999988888899999999888653
No 107
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.71 E-value=0.019 Score=45.02 Aligned_cols=107 Identities=23% Similarity=0.206 Sum_probs=82.9
Q ss_pred CCCCCCChhhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHhCCCCCH-----HHHHHHHHHhccCCCCceeHHHHHHHHh
Q 031791 5 NSNGANYLGSMDEVRKVFNKFDKNGDGKISADELKDVLRSLGSKTSP-----EEVKRVMDEIDTDGDGYIDFKEFSTFHL 79 (153)
Q Consensus 5 ~~~~~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~-----~~~~~l~~~~d~~~~~~i~~~ef~~~~~ 79 (153)
+.....++.....+...|.-++....|.++.+++...+-.+|...-. .++.++.+..+...-|.+++.+|...+.
T Consensus 736 R~sk~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~ 815 (890)
T KOG0035|consen 736 RDSKGTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLE 815 (890)
T ss_pred hcccchhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhh
Confidence 34456677888999999999999999999999999999999887553 3445555555666668899999999887
Q ss_pred c-CCCCchHHHHHHHhhhhcCCCCCCccHHHHHH
Q 031791 80 A-GGSTDGTKELKDAFDLYDMDQNGLISANELHA 112 (153)
Q Consensus 80 ~-~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~ 112 (153)
. .........+..+|+.+-+++. +|..+|+..
T Consensus 816 R~~e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 816 REYEDLDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred hhhhhhcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 6 3444555678888998887765 788888876
No 108
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.0084 Score=43.81 Aligned_cols=62 Identities=19% Similarity=0.318 Sum_probs=54.1
Q ss_pred HHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHhh
Q 031791 88 KELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKVDADGDGHVNFEEFKKMMT 151 (153)
Q Consensus 88 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 151 (153)
++...-|+....|..|+|+-.--+.++.... +.-.++..||...|.+.||.+++.||+..+.
T Consensus 231 eYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 231 EYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 5666779999999999999998888888554 6678999999999999999999999998763
No 109
>PLN02952 phosphoinositide phospholipase C
Probab=96.48 E-value=0.059 Score=40.93 Aligned_cols=84 Identities=18% Similarity=0.349 Sum_probs=42.8
Q ss_pred CceeHHHHHHHHhcCC--CCchHHHHHHHhhhhcCCCCCCccHHHHHHHHHHhCC--CCCHHHHHHHHHhhc-------C
Q 031791 67 GYIDFKEFSTFHLAGG--STDGTKELKDAFDLYDMDQNGLISANELHAVLKKLGE--KSSLKDCVNMIKKVD-------A 135 (153)
Q Consensus 67 ~~i~~~ef~~~~~~~~--~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d-------~ 135 (153)
|.++|.+|..+.+... .......+..+|..+..++ +.++.++|..+|..... ..+...+..++..+- .
T Consensus 15 g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~~ 93 (599)
T PLN02952 15 GSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVTR 93 (599)
T ss_pred CCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccccc
Confidence 5666666655554422 1113355666666664332 45666666666665432 234444444443221 1
Q ss_pred CCCCcccHHHHHHHhh
Q 031791 136 DGDGHVNFEEFKKMMT 151 (153)
Q Consensus 136 ~~~g~is~~ef~~~l~ 151 (153)
...+.++++.|..+|.
T Consensus 94 ~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 94 YTRHGLNLDDFFHFLL 109 (599)
T ss_pred ccccCcCHHHHHHHHc
Confidence 1223477777777664
No 110
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.43 E-value=0.014 Score=43.42 Aligned_cols=79 Identities=14% Similarity=0.156 Sum_probs=70.3
Q ss_pred CCCCCCCChhhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhcCC
Q 031791 4 NNSNGANYLGSMDEVRKVFNKFDKNGDGKISADELKDVLRSLGSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLAGG 82 (153)
Q Consensus 4 ~~~~~~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~ 82 (153)
.+..-.+++++....+..|..+|.++.|.++..++.+.++..+...+.+.+.++.+..+....|.+...+|..+++...
T Consensus 581 ~~~~i~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~ 659 (680)
T KOG0042|consen 581 MSIPIKLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIK 659 (680)
T ss_pred cccccccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHh
Confidence 4556678899999999999999999999999999999999988788899999999999988889999999998887643
No 111
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=96.40 E-value=0.069 Score=30.11 Aligned_cols=63 Identities=17% Similarity=0.269 Sum_probs=42.0
Q ss_pred HHHHHHHhhhhcCCCCCCccHHHHHHHHHHh-------CC----CCCHHHHHHHHHhhcCCCCCcccHHHHHHHhhc
Q 031791 87 TKELKDAFDLYDMDQNGLISANELHAVLKKL-------GE----KSSLKDCVNMIKKVDADGDGHVNFEEFKKMMTR 152 (153)
Q Consensus 87 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-------~~----~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 152 (153)
.++.+.+|..+ .|.+|.++...|..++... |. ...+..+..+|... .....|+.++|+++++.
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHh
Confidence 36788899999 5888999999999988863 21 12566777788776 34667999999998864
No 112
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=96.22 E-value=0.014 Score=40.79 Aligned_cols=61 Identities=18% Similarity=0.194 Sum_probs=35.1
Q ss_pred hHHHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHh
Q 031791 86 GTKELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKVDADGDGHVNFEEFKKMM 150 (153)
Q Consensus 86 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l 150 (153)
-...+..+|..+|.+.+|.++..|++.+... -.+..+..+|..+|...+|.||-.|+...+
T Consensus 248 CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld----knE~CikpFfnsCD~~kDg~iS~~EWC~CF 308 (434)
T KOG3555|consen 248 CKDSLGWMFNKLDTNYDLLLDQSELRAIELD----KNEACIKPFFNSCDTYKDGSISTNEWCYCF 308 (434)
T ss_pred hhhhhhhhhhccccccccccCHHHhhhhhcc----CchhHHHHHHhhhcccccCccccchhhhhh
Confidence 3345556666666666666666665544332 344556666666666666666666655443
No 113
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=96.20 E-value=0.013 Score=40.80 Aligned_cols=109 Identities=17% Similarity=0.269 Sum_probs=75.7
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHHhC---CCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhcCCCCchHHHHHH
Q 031791 16 DEVRKVFNKFDKNGDGKISADELKDVLRSLG---SKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLAGGSTDGTKELKD 92 (153)
Q Consensus 16 ~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~---~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~ 92 (153)
.+|...|..+-.+.++......+...-..+. .+.=..++--+|+.+|.+.++.++..|...+... ..+.-++.
T Consensus 211 ~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld----knE~Cikp 286 (434)
T KOG3555|consen 211 NRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELD----KNEACIKP 286 (434)
T ss_pred HHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhcc----CchhHHHH
Confidence 4566777776555555554444444322221 2333567888999999999999999998766543 44577889
Q ss_pred HhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHH
Q 031791 93 AFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNM 129 (153)
Q Consensus 93 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~ 129 (153)
.|..+|...+|.|+..|....+.... ++...++..|
T Consensus 287 FfnsCD~~kDg~iS~~EWC~CF~k~~-~pc~~e~~ri 322 (434)
T KOG3555|consen 287 FFNSCDTYKDGSISTNEWCYCFQKSD-PPCQAELCRI 322 (434)
T ss_pred HHhhhcccccCccccchhhhhhccCC-CccccHHHHH
Confidence 99999999999999999998888766 3333344433
No 114
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=96.11 E-value=0.082 Score=40.76 Aligned_cols=97 Identities=12% Similarity=0.221 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHhcCCCCchHHHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHH
Q 031791 51 PEEVKRVMDEIDTDGDGYIDFKEFSTFHLAGGSTDGTKELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMI 130 (153)
Q Consensus 51 ~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 130 (153)
..-+..+|...|.+++|.+++.+-..++......-...++...|+-.+..++|.+...++..+....+... ++..+|
T Consensus 135 ~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~f 211 (746)
T KOG0169|consen 135 EHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFLF 211 (746)
T ss_pred HHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHHH
Confidence 45677889999999999999999888877655445557788888888888999999999999988876543 677777
Q ss_pred HhhcCCCCCcccHHHHHHHhh
Q 031791 131 KKVDADGDGHVNFEEFKKMMT 151 (153)
Q Consensus 131 ~~~d~~~~g~is~~ef~~~l~ 151 (153)
..+..+ .+.++.+++..++.
T Consensus 212 ~~~s~~-~~~ls~~~L~~Fl~ 231 (746)
T KOG0169|consen 212 VQYSHG-KEYLSTDDLLRFLE 231 (746)
T ss_pred HHHhCC-CCccCHHHHHHHHH
Confidence 776544 66777777776653
No 115
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.06 E-value=0.031 Score=41.02 Aligned_cols=70 Identities=20% Similarity=0.230 Sum_probs=59.4
Q ss_pred CCChhhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 031791 9 ANYLGSMDEVRKVFNKFDKNGDGKISADELKDVLRSLGSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLA 80 (153)
Q Consensus 9 ~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 80 (153)
.+++++.+++-..|+.+-+|..|+|+-.--..++.+. .++-.++..||...|-+++|-+++.||+..+..
T Consensus 224 ~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKS--klpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 224 QITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKS--KLPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred ccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhc--cCchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 5678889999999999999999999988877777664 455788899999999999999999999877654
No 116
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.95 E-value=0.3 Score=38.70 Aligned_cols=121 Identities=12% Similarity=0.238 Sum_probs=85.5
Q ss_pred CCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcc--CCC-----CceeHHHHHHHHhcCCCCchHHHHHHHhhhhc
Q 031791 26 DKNGDGKISADELKDVLRSLGSKTSPEEVKRVMDEIDT--DGD-----GYIDFKEFSTFHLAGGSTDGTKELKDAFDLYD 98 (153)
Q Consensus 26 d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~--~~~-----~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d 98 (153)
-.+..|+|....+.+++.. .-....++..+..+.- ++. ...+++.|..++...+.. ..+..+|..+.
T Consensus 158 qvn~~grip~knI~k~F~~---~k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcpR---~eie~iF~ki~ 231 (1189)
T KOG1265|consen 158 QVNFEGRIPVKNIIKTFSA---DKKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCPR---PEIEEIFRKIS 231 (1189)
T ss_pred cccccccccHHHHHHHhhc---CCchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCCc---hhHHHHHHHhc
Confidence 3567788888888777643 2222444444444421 221 234567777777665542 56788999999
Q ss_pred CCCCCCccHHHHHHHHHHh----------CCCCCHHHHHHHHHhhcCCC----CCcccHHHHHHHhhc
Q 031791 99 MDQNGLISANELHAVLKKL----------GEKSSLKDCVNMIKKVDADG----DGHVNFEEFKKMMTR 152 (153)
Q Consensus 99 ~~~~g~i~~~e~~~~l~~~----------~~~~~~~~~~~~~~~~d~~~----~g~is~~ef~~~l~~ 152 (153)
.++.-++|.++|..++..- .+...+..+..++..+.++. .|.++-+-|+.++..
T Consensus 232 ~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 232 GKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred cCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 8888999999999999863 34567888999999997775 589999999998864
No 117
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.88 E-value=0.1 Score=32.69 Aligned_cols=62 Identities=18% Similarity=0.370 Sum_probs=46.0
Q ss_pred HHHHHhhCCCCCCccCHHHHHHHHHHhCC---CCCHHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 031791 19 RKVFNKFDKNGDGKISADELKDVLRSLGS---KTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLA 80 (153)
Q Consensus 19 ~~~f~~~d~~~~g~l~~~e~~~~l~~~~~---~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 80 (153)
...|..+-..+...|+...|.++++..++ .++..+++-+|..+-..+...|+|++|+..+..
T Consensus 5 F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 5 FKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp HHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHH
T ss_pred HHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHH
Confidence 33444444555678999999999987754 578899999999987666678999999888764
No 118
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=95.52 E-value=0.0093 Score=41.29 Aligned_cols=67 Identities=22% Similarity=0.239 Sum_probs=37.3
Q ss_pred hHHHHHHHHHhhCCCCCCccCHHHHHHHHHHhC-CCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 031791 14 SMDEVRKVFNKFDKNGDGKISADELKDVLRSLG-SKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLA 80 (153)
Q Consensus 14 ~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 80 (153)
+.+.++=.|..+|.++++.|...|+..+=..+. -.-...-...++...|.++++.|++.|++..+..
T Consensus 331 eeRvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 331 EERVVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred hhheeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 344555566667777776666666544322221 1222334455666666666666666666666554
No 119
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.41 E-value=0.028 Score=44.54 Aligned_cols=62 Identities=24% Similarity=0.361 Sum_probs=53.3
Q ss_pred HHHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHh
Q 031791 87 TKELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKVDADGDGHVNFEEFKKMM 150 (153)
Q Consensus 87 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l 150 (153)
...+..+|...|.+.+|.|+-.+.+..+...| +....+..++...|..+.|.+++.+|.-.+
T Consensus 282 ~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g--l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~ 343 (847)
T KOG0998|consen 282 KQKYSKIFSQVDKDNDGSISSNEARNIFLPFG--LSKPRLAHVWLLADTQNTGTLSKDEFALAM 343 (847)
T ss_pred HHHHHHHHHhccccCCCcccccccccccccCC--CChhhhhhhhhhcchhccCcccccccchhh
Confidence 35566789999999999999999999988855 667789999999999999999999887554
No 120
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.30 E-value=0.15 Score=31.90 Aligned_cols=52 Identities=21% Similarity=0.376 Sum_probs=30.9
Q ss_pred CCCCCccHHHHHHHHHHhC---CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHhh
Q 031791 100 DQNGLISANELHAVLKKLG---EKSSLKDCVNMIKKVDADGDGHVNFEEFKKMMT 151 (153)
Q Consensus 100 ~~~g~i~~~e~~~~l~~~~---~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 151 (153)
.....++-..|.++|+..+ ..++...++-+|..+-..+...|+|++|..+|.
T Consensus 14 ~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~ 68 (154)
T PF05517_consen 14 KNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALA 68 (154)
T ss_dssp STSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHH
T ss_pred CccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHH
Confidence 3445667777777777654 245666677777666444455577777776654
No 121
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=95.29 E-value=0.0093 Score=41.29 Aligned_cols=62 Identities=21% Similarity=0.280 Sum_probs=47.8
Q ss_pred HHHHHHhhhhcCCCCCCccHHHHHH---HHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHhh
Q 031791 88 KELKDAFDLYDMDQNGLISANELHA---VLKKLGEKSSLKDCVNMIKKVDADGDGHVNFEEFKKMMT 151 (153)
Q Consensus 88 ~~~~~~f~~~d~~~~g~i~~~e~~~---~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 151 (153)
..+...|..+|.+.++.|.+.|.+- ++.... -.......+++.+|.|+|..||++|+...|.
T Consensus 333 Rvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s--~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 333 RVVHWYFNQLDKNSNNDIERREWKPFKRVLLKKS--KPRKCSRKFFKYCDLNKDKKISLDEWRGCLG 397 (421)
T ss_pred heeeeeeeeecccccCccchhhcchHHHHHHhhc--cHHHHhhhcchhcccCCCceecHHHHhhhhc
Confidence 3567789999999999999988654 444332 2345677899999999999999999988764
No 122
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=94.98 E-value=0.063 Score=44.47 Aligned_cols=58 Identities=21% Similarity=0.418 Sum_probs=48.3
Q ss_pred HhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHhh
Q 031791 93 AFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKVDADGDGHVNFEEFKKMMT 151 (153)
Q Consensus 93 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 151 (153)
.|+-||+||.|.|+..+|.+.+.... ..++.+++-++.-...+.+..++|++|+.-+.
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~k-~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGHK-HYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhccc-cchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 47788999999999999999998543 34677888888878888889999999997653
No 123
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.80 E-value=0.076 Score=41.20 Aligned_cols=67 Identities=24% Similarity=0.340 Sum_probs=54.8
Q ss_pred ChhhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHh
Q 031791 11 YLGSMDEVRKVFNKFDKNGDGKISADELKDVLRSLGSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHL 79 (153)
Q Consensus 11 ~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~ 79 (153)
..........+|..+|+.-.|+|+-.+-..+|-..+++ ...+..++..-|.|+||+++-+||+-.+.
T Consensus 190 p~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lp--q~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 190 PQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSGLP--QNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred cchhhhHHHHHhhhcccccccccccHHHHHHHHhcCCc--hhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 34456778899999999999999999988888765544 66778888889999999999999976543
No 124
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=94.78 E-value=0.087 Score=39.48 Aligned_cols=64 Identities=20% Similarity=0.296 Sum_probs=57.6
Q ss_pred HHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHhh
Q 031791 88 KELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKVDADGDGHVNFEEFKKMMT 151 (153)
Q Consensus 88 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 151 (153)
...+.-|..+|.++.|.++..++.+.++..+...+++.+..++...+.+.+|.+...+|.+++.
T Consensus 593 ~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s 656 (680)
T KOG0042|consen 593 LRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMS 656 (680)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHH
Confidence 4455678999999999999999999999998888999999999999999999999999988764
No 125
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=94.31 E-value=0.1 Score=43.36 Aligned_cols=57 Identities=18% Similarity=0.451 Sum_probs=46.8
Q ss_pred HHHhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHH
Q 031791 21 VFNKFDKNGDGKISADELKDVLRSLGSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFH 78 (153)
Q Consensus 21 ~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~ 78 (153)
.|..+|+++.|.|+..+|.+.+.... .-+..+++.++.....+....++|.+|+.-+
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~k-~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGHK-HYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhccc-cchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 36677999999999999999886432 3467889999998888888999999997653
No 126
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=93.75 E-value=0.16 Score=38.60 Aligned_cols=76 Identities=24% Similarity=0.230 Sum_probs=53.5
Q ss_pred eeHHHHHHHHhcCCCC-chHHHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHH
Q 031791 69 IDFKEFSTFHLAGGST-DGTKELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKVDADGDGHVNFEE 145 (153)
Q Consensus 69 i~~~ef~~~~~~~~~~-~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~e 145 (153)
|+|..|..++....+. .....+..+|+.+|..++|.|+..++...+..+.....-+.+.-+|+.+|++.+ ....++
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~ 611 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREE 611 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-cccccc
Confidence 4444555544443322 223457789999999999999999999999988765555667778888888776 554443
No 127
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=93.31 E-value=0.2 Score=34.79 Aligned_cols=58 Identities=28% Similarity=0.419 Sum_probs=43.3
Q ss_pred HHhhhhcCCCCCCccHHHHHHHHHHh----CCCCCH-H-----------HHHHHHHhhcCCCCCcccHHHHHHH
Q 031791 92 DAFDLYDMDQNGLISANELHAVLKKL----GEKSSL-K-----------DCVNMIKKVDADGDGHVNFEEFKKM 149 (153)
Q Consensus 92 ~~f~~~d~~~~g~i~~~e~~~~l~~~----~~~~~~-~-----------~~~~~~~~~d~~~~g~is~~ef~~~ 149 (153)
..|.+.|.+++|+++-.|+..++..- -.+.++ . .-+..++..|.|.+..||+++|++.
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~ 321 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLND 321 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhh
Confidence 46788899999999999999888752 222221 1 1234678889999999999999875
No 128
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=93.17 E-value=0.36 Score=38.35 Aligned_cols=65 Identities=25% Similarity=0.309 Sum_probs=52.3
Q ss_pred HHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCH-----HHHHHHHHhhcCCCCCcccHHHHHHHhhc
Q 031791 88 KELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSL-----KDCVNMIKKVDADGDGHVNFEEFKKMMTR 152 (153)
Q Consensus 88 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~-----~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 152 (153)
..++..|..++....|.++++++..++-.+|...-. .++..++...|++..|.+++.+|...|.+
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R 816 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLER 816 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhh
Confidence 568889999999999999999999999999987663 23334445557777799999999988754
No 129
>PLN02952 phosphoinositide phospholipase C
Probab=93.14 E-value=2.3 Score=32.78 Aligned_cols=87 Identities=13% Similarity=0.158 Sum_probs=59.6
Q ss_pred CCCccCHHHHHHHHHHhCC--CCCHHHHHHHHHHhccCCCCceeHHHHHHHHhcCCCC--chHHHHHHHhhhh----c--
Q 031791 29 GDGKISADELKDVLRSLGS--KTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLAGGST--DGTKELKDAFDLY----D-- 98 (153)
Q Consensus 29 ~~g~l~~~e~~~~l~~~~~--~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~--~~~~~~~~~f~~~----d-- 98 (153)
+.|.+++.+|..+.+.+.. ..+..++..+|..+..++ +.++.++|..++...... ...+....++..+ .
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 4689999999888776632 347899999999996544 679999999999874332 2223344443322 1
Q ss_pred -CCCCCCccHHHHHHHHHH
Q 031791 99 -MDQNGLISANELHAVLKK 116 (153)
Q Consensus 99 -~~~~g~i~~~e~~~~l~~ 116 (153)
..+.+.++.+.|..+|..
T Consensus 92 ~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred ccccccCcCHHHHHHHHcC
Confidence 113356899999888863
No 130
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=93.03 E-value=0.34 Score=36.63 Aligned_cols=90 Identities=19% Similarity=0.228 Sum_probs=61.7
Q ss_pred CCCCCChhhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHhCCCC----CHHHHHHHHHHhccCCCCceeHHHHHHHHhcC
Q 031791 6 SNGANYLGSMDEVRKVFNKFDKNGDGKISADELKDVLRSLGSKT----SPEEVKRVMDEIDTDGDGYIDFKEFSTFHLAG 81 (153)
Q Consensus 6 ~~~~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~----~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 81 (153)
..-.+++.-++.+..+|..+|.++||-++..|+..++......+ ...+. .-.+..|.++++-|+..+...
T Consensus 305 ~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~------t~~~~~G~ltl~g~l~~WsL~ 378 (625)
T KOG1707|consen 305 QSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDS------TVKNERGWLTLNGFLSQWSLM 378 (625)
T ss_pred cceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCccccc------ceecccceeehhhHHHHHHHH
Confidence 34457888899999999999999999999999999998774433 11111 112356899999999988773
Q ss_pred CCCchHH-HHHHHhhhhcCCC
Q 031791 82 GSTDGTK-ELKDAFDLYDMDQ 101 (153)
Q Consensus 82 ~~~~~~~-~~~~~f~~~d~~~ 101 (153)
....... .-..+|..|..+.
T Consensus 379 Tlld~~~t~~~L~Ylgf~~~~ 399 (625)
T KOG1707|consen 379 TLLDPRRTLEYLAYLGFPTDA 399 (625)
T ss_pred hhccHHHHHHHHHhcCCcccc
Confidence 3333222 2334566666553
No 131
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=91.26 E-value=1.7 Score=34.11 Aligned_cols=134 Identities=12% Similarity=0.135 Sum_probs=86.6
Q ss_pred HHHHHHHHHhhCCCC-CCccCHHHHHHHHHHh--------CCC--CC---HHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 031791 15 MDEVRKVFNKFDKNG-DGKISADELKDVLRSL--------GSK--TS---PEEVKRVMDEIDTDGDGYIDFKEFSTFHLA 80 (153)
Q Consensus 15 ~~~l~~~f~~~d~~~-~g~l~~~e~~~~l~~~--------~~~--~~---~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 80 (153)
......+|..++..+ ...+...+....|..+ |.- .+ ..-+..++++||+...|.|..-+|...+..
T Consensus 419 ltl~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls~ki~~i~ 498 (966)
T KOG4286|consen 419 LSLALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKIGIIS 498 (966)
T ss_pred HHHHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCCCcceEEeeehhhHHH
Confidence 344556677666543 3445555555444321 211 11 223577999999999999999999887777
Q ss_pred CCCCchHHHHHHHhhhhcCCCCCCccHHHHHHHHHH-------h------CCCCCHHHHHHHHHhhcCCCCCcccHHHHH
Q 031791 81 GGSTDGTKELKDAFDLYDMDQNGLISANELHAVLKK-------L------GEKSSLKDCVNMIKKVDADGDGHVNFEEFK 147 (153)
Q Consensus 81 ~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~-------~------~~~~~~~~~~~~~~~~d~~~~g~is~~ef~ 147 (153)
.+...-.+++..+|.....++.-++ ...|..++.. + |..--+.-++.+|... ++-..|++..|.
T Consensus 499 lck~~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAfGgsNvepsvrsCF~~v--~~~pei~~~~f~ 575 (966)
T KOG4286|consen 499 LCKAHLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAFGGSNIEPSVRSCFQFV--NNKPEIEAALFL 575 (966)
T ss_pred HhcchhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhhcCCCCChHHHHHHHhc--CCCCcchHHHHH
Confidence 7777777899999999987776654 5555555543 2 3222234567777733 455679999998
Q ss_pred HHhh
Q 031791 148 KMMT 151 (153)
Q Consensus 148 ~~l~ 151 (153)
.++.
T Consensus 576 dw~~ 579 (966)
T KOG4286|consen 576 DWMR 579 (966)
T ss_pred HHhc
Confidence 8764
No 132
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=89.90 E-value=1.1 Score=31.32 Aligned_cols=90 Identities=20% Similarity=0.307 Sum_probs=54.1
Q ss_pred HHHhhCCCCCCccCHHHHHHHHHHh----CCC-CCHHHH-----------HHHHHHhccCCCCceeHHHHHHHHhcCCCC
Q 031791 21 VFNKFDKNGDGKISADELKDVLRSL----GSK-TSPEEV-----------KRVMDEIDTDGDGYIDFKEFSTFHLAGGST 84 (153)
Q Consensus 21 ~f~~~d~~~~g~l~~~e~~~~l~~~----~~~-~~~~~~-----------~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~ 84 (153)
.|..+|.+++|+++..++..++..- -.+ ....+. ..++..+|.+.+.-|+.+||+.-.......
T Consensus 249 FF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~kef~ 328 (442)
T KOG3866|consen 249 FFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNKEFN 328 (442)
T ss_pred heeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhcccC
Confidence 3566678999999999999887432 111 111111 235667799999999999998876653322
Q ss_pred chHHHHHHHhhhhcCCCCCCccHHHHHHHHHH
Q 031791 85 DGTKELKDAFDLYDMDQNGLISANELHAVLKK 116 (153)
Q Consensus 85 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~ 116 (153)
...+.|. .+ +....-|-+|++++=+.
T Consensus 329 ~p~e~WE----tl--~q~~~yTeEEL~~fE~e 354 (442)
T KOG3866|consen 329 PPKEEWE----TL--GQKKVYTEEELQQFERE 354 (442)
T ss_pred Ccchhhh----hh--cccccccHHHHHHHHHH
Confidence 2222222 22 22345666666665554
No 133
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.32 E-value=0.22 Score=39.72 Aligned_cols=69 Identities=23% Similarity=0.306 Sum_probs=59.2
Q ss_pred CCChhhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHh
Q 031791 9 ANYLGSMDEVRKVFNKFDKNGDGKISADELKDVLRSLGSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHL 79 (153)
Q Consensus 9 ~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~ 79 (153)
.+++.+...+..+|...|.+.+|.|+..+....+.. ..+....+..+|...++...+.+++.+|...+-
T Consensus 276 ~vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~--~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~ 344 (847)
T KOG0998|consen 276 KVSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLP--FGLSKPRLAHVWLLADTQNTGTLSKDEFALAMH 344 (847)
T ss_pred ccChHHHHHHHHHHHhccccCCCccccccccccccc--CCCChhhhhhhhhhcchhccCcccccccchhhh
Confidence 567888899999999999999999999999988765 566688889999999999999999998865543
No 134
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=89.15 E-value=3.9 Score=32.77 Aligned_cols=143 Identities=17% Similarity=0.190 Sum_probs=83.2
Q ss_pred CCCChhhHHHH-HHHHHhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHH-HHHHHhccCCCCceeHHHHHHHHhcCCCCc
Q 031791 8 GANYLGSMDEV-RKVFNKFDKNGDGKISADELKDVLRSLGSKTSPEEVK-RVMDEIDTDGDGYIDFKEFSTFHLAGGSTD 85 (153)
Q Consensus 8 ~~~~~~~~~~l-~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~-~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~ 85 (153)
.+..+.+|..+ +..+...|...-..|+..++...|...++..+..... +-|.... ...+.++|.+|..+...+.-..
T Consensus 135 ~a~~p~qI~~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted~-~~k~dlsf~~f~~ly~~lmfs~ 213 (1267)
T KOG1264|consen 135 NAPTPLQIERWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTEDG-ARKDDLSFEQFHLLYKKLMFSQ 213 (1267)
T ss_pred cCCChHHHHHHHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhHhh-hccccccHHHHHHHHHHHhhcc
Confidence 34556666655 4556667766666799999999988877776654433 3233222 2356799999988876633222
Q ss_pred hHHHHHH---Hhhh--hcCCCCCCccHHHHHHHHHHhCCCCC---HHHHHHHHHhhcCC-----CCCcccHHHHHHHhh
Q 031791 86 GTKELKD---AFDL--YDMDQNGLISANELHAVLKKLGEKSS---LKDCVNMIKKVDAD-----GDGHVNFEEFKKMMT 151 (153)
Q Consensus 86 ~~~~~~~---~f~~--~d~~~~g~i~~~e~~~~l~~~~~~~~---~~~~~~~~~~~d~~-----~~g~is~~ef~~~l~ 151 (153)
....+.. .|-. =+...--.++..+|+++|........ ...+.+++..|-.| ....+.+.||+.+|.
T Consensus 214 ~~a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~fLF 292 (1267)
T KOG1264|consen 214 QKAILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTFLF 292 (1267)
T ss_pred chhhhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHHHh
Confidence 2111111 1111 12222357999999999986432211 12344555544222 345799999999875
No 135
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=89.01 E-value=1.9 Score=25.12 Aligned_cols=20 Identities=15% Similarity=0.408 Sum_probs=10.9
Q ss_pred hccCCCCceeHHHHHHHHhc
Q 031791 61 IDTDGDGYIDFKEFSTFHLA 80 (153)
Q Consensus 61 ~d~~~~~~i~~~ef~~~~~~ 80 (153)
+|+.....|+.++...++..
T Consensus 12 YDT~tS~YITLedi~~lV~~ 31 (107)
T TIGR01848 12 YDTETSSYVTLEDIRDLVRE 31 (107)
T ss_pred cCCCccceeeHHHHHHHHHC
Confidence 45555555666665555543
No 136
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=88.51 E-value=1.9 Score=26.54 Aligned_cols=70 Identities=14% Similarity=0.163 Sum_probs=36.3
Q ss_pred CCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhc-------cCCCCceeHHHHHHHHhcC-CCCchHHHHHHHhhhhcCCC
Q 031791 30 DGKISADELKDVLRSLGSKTSPEEVKRVMDEID-------TDGDGYIDFKEFSTFHLAG-GSTDGTKELKDAFDLYDMDQ 101 (153)
Q Consensus 30 ~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d-------~~~~~~i~~~ef~~~~~~~-~~~~~~~~~~~~f~~~d~~~ 101 (153)
-+.|+..||.++-+-+... ...++.++..+. .+..+.|+|+-|..++..+ ....+.+....+|..|-...
T Consensus 5 ~~~lsp~eF~qLq~y~eys--~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~~ 82 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYSEYS--TKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKKP 82 (138)
T ss_dssp -S-S-HHHHHHHHHHHHH------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS----
T ss_pred eeccCHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 3567888888776554332 334445555442 2344689999999998883 33345567778888886554
No 137
>PLN02228 Phosphoinositide phospholipase C
Probab=87.97 E-value=5.9 Score=30.44 Aligned_cols=29 Identities=24% Similarity=0.534 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 031791 50 SPEEVKRVMDEIDTDGDGYIDFKEFSTFHLA 80 (153)
Q Consensus 50 ~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 80 (153)
+..++..+|..+..+ +.++.++|..++..
T Consensus 22 ~~~ei~~if~~~s~~--~~~t~~~~~~FL~~ 50 (567)
T PLN02228 22 PPVSIKRLFEAYSRN--GKMSFDELLRFVSE 50 (567)
T ss_pred CcHHHHHHHHHhcCC--CccCHHHHHHHHHH
Confidence 455555555555322 34555555555544
No 138
>PLN02230 phosphoinositide phospholipase C 4
Probab=87.73 E-value=6.2 Score=30.53 Aligned_cols=65 Identities=15% Similarity=0.364 Sum_probs=39.9
Q ss_pred HHHHHHHhhhhcCCCCCCccHHHHHHHHHHhC-C--CCCHHHHHHHHHhhc-------CCCCCcccHHHHHHHhhc
Q 031791 87 TKELKDAFDLYDMDQNGLISANELHAVLKKLG-E--KSSLKDCVNMIKKVD-------ADGDGHVNFEEFKKMMTR 152 (153)
Q Consensus 87 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~--~~~~~~~~~~~~~~d-------~~~~g~is~~ef~~~l~~ 152 (153)
...+..+|..+..++ +.++.++|..+|.... . ..+.+.+..++..+- .-..+.++++.|..+|..
T Consensus 28 ~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 28 VADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred cHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 366777777775443 6788888888887654 2 234455555554331 112345888888887753
No 139
>PLN02222 phosphoinositide phospholipase C 2
Probab=87.62 E-value=4.3 Score=31.25 Aligned_cols=61 Identities=23% Similarity=0.451 Sum_probs=27.2
Q ss_pred HHHHHhhhhcCCCCCCccHHHHHHHHHHhCC--CCCHHHHHHHHHhhcC-CCCCcccHHHHHHHhh
Q 031791 89 ELKDAFDLYDMDQNGLISANELHAVLKKLGE--KSSLKDCVNMIKKVDA-DGDGHVNFEEFKKMMT 151 (153)
Q Consensus 89 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~-~~~g~is~~ef~~~l~ 151 (153)
.+..+|..+.. .+.++.++|..+|..... ..+.+.+..++..+.. ...+.++++.|..+|.
T Consensus 26 ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~ 89 (581)
T PLN02222 26 EIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLF 89 (581)
T ss_pred HHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhc
Confidence 44555555432 245555555555554321 1233444444443311 1233455555555543
No 140
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=87.61 E-value=1.9 Score=24.74 Aligned_cols=49 Identities=18% Similarity=0.259 Sum_probs=20.3
Q ss_pred CCceeHHHHHHHHhcCCCCchHHHHHHHhhhhcC---CCCCCccHHHHHHHHHHh
Q 031791 66 DGYIDFKEFSTFHLAGGSTDGTKELKDAFDLYDM---DQNGLISANELHAVLKKL 117 (153)
Q Consensus 66 ~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~---~~~g~i~~~e~~~~l~~~ 117 (153)
+|.+....|-.++... ...+....+|..+-. -....|+.+|++.++.++
T Consensus 42 dG~L~rs~Fg~CIGM~---dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 42 DGLLPRSDFGECIGMK---DSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp TTBEEGGGHHHHHT-----S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred CCcccHHHHHHhcCCc---ccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 4555555555544431 122334444443321 113456666666655543
No 141
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=87.44 E-value=0.75 Score=27.16 Aligned_cols=32 Identities=19% Similarity=0.439 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 031791 49 TSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLA 80 (153)
Q Consensus 49 ~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 80 (153)
++.++++.++..+-.+..|++.|.+|+.-+..
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 57888999999999999999999999988775
No 142
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=86.86 E-value=4.2 Score=23.29 Aligned_cols=82 Identities=17% Similarity=0.216 Sum_probs=47.7
Q ss_pred CCccCHHHHHHHHHHh--CCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhcCC-CCchHHHHHHHhhhhcCCCCCCcc
Q 031791 30 DGKISADELKDVLRSL--GSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLAGG-STDGTKELKDAFDLYDMDQNGLIS 106 (153)
Q Consensus 30 ~g~l~~~e~~~~l~~~--~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~-~~~~~~~~~~~f~~~d~~~~g~i~ 106 (153)
||.++..|...+-..+ ....+..+...++..+........++.+|...+.... .......+..++..--. +|.++
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA~A--DG~~~ 90 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVAYA--DGELD 90 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh--cCCCC
Confidence 6778888877665443 1345667777777776655555577888877766533 22222334444544433 36676
Q ss_pred HHHHHHH
Q 031791 107 ANELHAV 113 (153)
Q Consensus 107 ~~e~~~~ 113 (153)
..|-.-+
T Consensus 91 ~~E~~~l 97 (104)
T cd07313 91 EYEEHLI 97 (104)
T ss_pred HHHHHHH
Confidence 6665433
No 143
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=86.23 E-value=1.1 Score=23.97 Aligned_cols=56 Identities=14% Similarity=0.316 Sum_probs=38.1
Q ss_pred HHHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCC-------CCCcccHHHHHHHh
Q 031791 87 TKELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKVDAD-------GDGHVNFEEFKKMM 150 (153)
Q Consensus 87 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~-------~~g~is~~ef~~~l 150 (153)
.+.+..+|+.+ .++.++||.+||++.|.. ++++.+...+.+- ..|.++|..|.+.|
T Consensus 5 ~eqv~~aFr~l-A~~KpyVT~~dLr~~l~p-------e~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~l 67 (69)
T PF08726_consen 5 AEQVEEAFRAL-AGGKPYVTEEDLRRSLTP-------EQAEYCISRMPPYEGPDGDAIPGAYDYESFTNSL 67 (69)
T ss_dssp CHHHHHHHHHH-CTSSSCEEHHHHHHHS-C-------CCHHHHHCCSEC--SSS----TTEEECHHHHCCC
T ss_pred HHHHHHHHHHH-HcCCCcccHHHHHHHcCc-------HHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHHH
Confidence 37789999999 678899999999987542 2334444444221 23679999988654
No 144
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.05 E-value=0.94 Score=32.41 Aligned_cols=65 Identities=22% Similarity=0.368 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhCCCCCCccCHHHHHHHHHHhCCC-CCHHHHHHHHHHhccCCCCceeHHHHHHHHh
Q 031791 15 MDEVRKVFNKFDKNGDGKISADELKDVLRSLGSK-TSPEEVKRVMDEIDTDGDGYIDFKEFSTFHL 79 (153)
Q Consensus 15 ~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~-~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~ 79 (153)
-.++++.|+.+|+.++|+|+..-+..++..++.. ...+.+...-+.+++..-|.|-..+|+....
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~~ 373 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEFF 373 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEecccccccc
Confidence 4677899999999999999999999999988743 3345555554556666666666666654443
No 145
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=85.79 E-value=3 Score=35.89 Aligned_cols=71 Identities=13% Similarity=0.171 Sum_probs=53.2
Q ss_pred CCChhhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHhCCCC----CHHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 031791 9 ANYLGSMDEVRKVFNKFDKNGDGKISADELKDVLRSLGSKT----SPEEVKRVMDEIDTDGDGYIDFKEFSTFHLA 80 (153)
Q Consensus 9 ~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~----~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 80 (153)
.|++.+.+.+.++|..+|++.+|.|...++..+++.+.-++ .... +-+-..+....++.|++.+-+..+..
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTK 1484 (1592)
T ss_pred cCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHH
Confidence 79999999999999999999999999999999998874332 1111 11111223346788999988877765
No 146
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=85.01 E-value=1.2 Score=23.90 Aligned_cols=60 Identities=13% Similarity=0.074 Sum_probs=38.5
Q ss_pred CceeHHHHHHHHhcCCCCchHHHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 031791 67 GYIDFKEFSTFHLAGGSTDGTKELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKK 132 (153)
Q Consensus 67 ~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 132 (153)
--++|..++..++....+.....+...| +.-..+.|+++||.+.++..- -++-+..+++.
T Consensus 7 p~~~F~~L~~~l~~~l~~~~~~~l~~~Y---~~~k~~kIsR~~fvr~lR~IV---GD~lL~s~I~~ 66 (70)
T PF12174_consen 7 PWMPFPMLFSALSKHLPPSKMDLLQKHY---EEFKKKKISREEFVRKLRQIV---GDQLLRSAIKS 66 (70)
T ss_pred CcccHHHHHHHHHHHCCHHHHHHHHHHH---HHHHHCCCCHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 3477787777777766555544444444 444578899999999998752 24445554443
No 147
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=84.06 E-value=5.5 Score=22.24 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=29.7
Q ss_pred CceeHHHHHHHHhcCCCCchHHHHHHHhhhhcCCCCCCccHHHHHHHHHHhC
Q 031791 67 GYIDFKEFSTFHLAGGSTDGTKELKDAFDLYDMDQNGLISANELHAVLKKLG 118 (153)
Q Consensus 67 ~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~ 118 (153)
..++..|++.+.....-+-.......+...+-...-...+.++-.+++..+.
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia 64 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIA 64 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 3466666666665555555555566666665555555555555555555543
No 148
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=83.81 E-value=3.2 Score=19.95 Aligned_cols=32 Identities=25% Similarity=0.531 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHhhCC--CCCCccCHHHHHHHHHH
Q 031791 13 GSMDEVRKVFNKFDK--NGDGKISADELKDVLRS 44 (153)
Q Consensus 13 ~~~~~l~~~f~~~d~--~~~g~l~~~e~~~~l~~ 44 (153)
..+..+-.+|+.+.. .+...|+..||..++..
T Consensus 3 ~ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 3 KAIETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 346677778887752 23567999999988753
No 149
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=83.39 E-value=6 Score=22.11 Aligned_cols=66 Identities=12% Similarity=0.196 Sum_probs=44.5
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhc---CCCCchHHHHHHHhhhh
Q 031791 32 KISADELKDVLRSLGSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLA---GGSTDGTKELKDAFDLY 97 (153)
Q Consensus 32 ~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~---~~~~~~~~~~~~~f~~~ 97 (153)
.||.+||.+.-+..+.+.+......+...+..+.-...+-.+=..++.. ...+.....+..+|..|
T Consensus 14 ~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~iT~p~ta~~vn~Lf~qf 82 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAKITSPQTAKQVNELFEQF 82 (85)
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999886665555555544444333 33333334455555443
No 150
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.26 E-value=4.4 Score=31.72 Aligned_cols=76 Identities=20% Similarity=0.367 Sum_probs=43.8
Q ss_pred eeHHHHHHHHhcCCCCchHHHHHHHhhhhcCCCCCCccHHHHHHHHHHhC---C-----CCCHHHHHHHHHhhcCCCCCc
Q 031791 69 IDFKEFSTFHLAGGSTDGTKELKDAFDLYDMDQNGLISANELHAVLKKLG---E-----KSSLKDCVNMIKKVDADGDGH 140 (153)
Q Consensus 69 i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~---~-----~~~~~~~~~~~~~~d~~~~g~ 140 (153)
++++||. ....+.+.+++..|.++|. ++|.++.+++..++.... . ..+.+-...++...|.+..|.
T Consensus 4 ~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 77 (646)
T KOG0039|consen 4 ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGY 77 (646)
T ss_pred cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccce
Confidence 6666666 2233445677777777776 677777777777766431 1 112233344555666666666
Q ss_pred ccHHHHHHHh
Q 031791 141 VNFEEFKKMM 150 (153)
Q Consensus 141 is~~ef~~~l 150 (153)
+.++++...+
T Consensus 78 ~~~~~~~~ll 87 (646)
T KOG0039|consen 78 ITNEDLEILL 87 (646)
T ss_pred eeecchhHHH
Confidence 6655554443
No 151
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.77 E-value=1.2 Score=31.91 Aligned_cols=61 Identities=26% Similarity=0.471 Sum_probs=43.6
Q ss_pred hHHHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHH-hhcCCCCCcccHHHH
Q 031791 86 GTKELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIK-KVDADGDGHVNFEEF 146 (153)
Q Consensus 86 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~-~~d~~~~g~is~~ef 146 (153)
..+.++++|..+|+.+.|+|+-.-++.++.......++...-.+.+ -.|+..-|.|-..+|
T Consensus 307 ~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~ 368 (449)
T KOG2871|consen 307 PSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDF 368 (449)
T ss_pred CCHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccc
Confidence 3478999999999999999999999999998875555544333333 245555555554444
No 152
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=82.65 E-value=6.7 Score=22.19 Aligned_cols=63 Identities=16% Similarity=0.282 Sum_probs=39.2
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHHh-------C----CCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhcC
Q 031791 16 DEVRKVFNKFDKNGDGKISADELKDVLRSL-------G----SKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLAG 81 (153)
Q Consensus 16 ~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~-------~----~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 81 (153)
++++-+|+.+ .|++|.++...|..+|+.+ | +...+..+...|.... ....|+..+|+.++...
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHHT-
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHHhC
Confidence 5677788888 5789999999998887633 2 1224566667776652 34669999999988764
No 153
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=81.97 E-value=27 Score=28.65 Aligned_cols=80 Identities=11% Similarity=0.245 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhc----------CCCCchHHHHHHHhhhhcCC---
Q 031791 34 SADELKDVLRSLGSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLA----------GGSTDGTKELKDAFDLYDMD--- 100 (153)
Q Consensus 34 ~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~----------~~~~~~~~~~~~~f~~~d~~--- 100 (153)
+.+.|..++.. -.+..+++.+|..+..++...++..+++.++.. +.++.....+..+...|.++
T Consensus 206 ~~e~f~~~l~k---lcpR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~ 282 (1189)
T KOG1265|consen 206 TLEKFYRLLNK---LCPRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDN 282 (1189)
T ss_pred cHHHHHHHHHh---cCCchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhh
Confidence 33344444443 345678999999998777778999999999876 23344446777888888765
Q ss_pred -CCCCccHHHHHHHHHH
Q 031791 101 -QNGLISANELHAVLKK 116 (153)
Q Consensus 101 -~~g~i~~~e~~~~l~~ 116 (153)
..|.++.+-|...+-.
T Consensus 283 a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 283 AEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred hhccccchhhhHHHhhC
Confidence 4688999888877764
No 154
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=80.70 E-value=6.7 Score=20.89 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=26.6
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCceeHH
Q 031791 33 ISADELKDVLRSLGSKTSPEEVKRVMDEIDTDGDGYIDFK 72 (153)
Q Consensus 33 l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ 72 (153)
++..++..++...|..++.+++..+++.-+..+-..++-.
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~ 53 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQ 53 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChH
Confidence 4456788888877888888888888777554443334433
No 155
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=79.35 E-value=4.9 Score=21.04 Aligned_cols=22 Identities=18% Similarity=0.558 Sum_probs=17.9
Q ss_pred hhhcCCCCCCccHHHHHHHHHH
Q 031791 95 DLYDMDQNGLISANELHAVLKK 116 (153)
Q Consensus 95 ~~~d~~~~g~i~~~e~~~~l~~ 116 (153)
++||+..+.+|+.+++.++.+.
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 4578888888888888888885
No 156
>PLN02223 phosphoinositide phospholipase C
Probab=78.44 E-value=22 Score=27.30 Aligned_cols=65 Identities=5% Similarity=0.019 Sum_probs=41.8
Q ss_pred HHHHHHHhhhhcCCCCCCccHHHHHHHH---HHhC--CCCCHHHHHHHHHhhcCC--------CCCcccHHHHHHHhhc
Q 031791 87 TKELKDAFDLYDMDQNGLISANELHAVL---KKLG--EKSSLKDCVNMIKKVDAD--------GDGHVNFEEFKKMMTR 152 (153)
Q Consensus 87 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l---~~~~--~~~~~~~~~~~~~~~d~~--------~~g~is~~ef~~~l~~ 152 (153)
.+.+..+|..+. ++.|.++.+.+.+++ .... ...+.++++.++..+-.. ..+.++++.|..+|..
T Consensus 15 p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 15 PDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred cHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 366777888774 566788888888887 3322 234555666666544221 2256899999888754
No 157
>PLN02228 Phosphoinositide phospholipase C
Probab=78.33 E-value=21 Score=27.68 Aligned_cols=66 Identities=18% Similarity=0.433 Sum_probs=44.3
Q ss_pred CCCChhhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHh-CC-CCCHHHHHHHHHHhccCC----CCceeHHHHHHHH
Q 031791 8 GANYLGSMDEVRKVFNKFDKNGDGKISADELKDVLRSL-GS-KTSPEEVKRVMDEIDTDG----DGYIDFKEFSTFH 78 (153)
Q Consensus 8 ~~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~-~~-~~~~~~~~~l~~~~d~~~----~~~i~~~ef~~~~ 78 (153)
...++.++. .+|..+.. ++.|+.++|...|... +. ..+.+.+..++..+.... .+.++...|..++
T Consensus 19 ~~~~~~ei~---~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl 90 (567)
T PLN02228 19 TREPPVSIK---RLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYL 90 (567)
T ss_pred CCCCcHHHH---HHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHh
Confidence 344555664 44666542 3579999999999776 32 345677888888886432 3568888887776
No 158
>PLN02222 phosphoinositide phospholipase C 2
Probab=77.20 E-value=19 Score=27.90 Aligned_cols=66 Identities=14% Similarity=0.371 Sum_probs=46.1
Q ss_pred CChhhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHh-CC-CCCHHHHHHHHHHhcc-CCCCceeHHHHHHHHhc
Q 031791 10 NYLGSMDEVRKVFNKFDKNGDGKISADELKDVLRSL-GS-KTSPEEVKRVMDEIDT-DGDGYIDFKEFSTFHLA 80 (153)
Q Consensus 10 ~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~-~~-~~~~~~~~~l~~~~d~-~~~~~i~~~ef~~~~~~ 80 (153)
..+.++ ..+|..+.. ++.++.++|...|... +. ..+.+.+..++..+.. ...+.+++..|..++..
T Consensus 22 ~~~~ei---~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 22 EAPREI---KTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CCcHHH---HHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 344544 555666642 4789999999999776 33 3467778888887632 23466999999999875
No 159
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=76.89 E-value=11 Score=21.11 Aligned_cols=66 Identities=14% Similarity=0.053 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHhcCCCCchHHHHHHHhhhhcCCCCCCccHHHHHHHHHHh
Q 031791 51 PEEVKRVMDEIDTDGDGYIDFKEFSTFHLAGGSTDGTKELKDAFDLYDMDQNGLISANELHAVLKKL 117 (153)
Q Consensus 51 ~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 117 (153)
..+....++..-.++ -.|.+.+|...+...-+.....+...+=..+|--.+|+||.=||--+.+-+
T Consensus 6 K~eA~~FW~~~Fg~r-~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRlF 71 (85)
T PF02761_consen 6 KAEAAEFWKTSFGKR-TIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTRLF 71 (85)
T ss_dssp SHHHHHHHHHHHTT--SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHHT
T ss_pred cHHHHHHHHHHCCCC-eEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHHHH
Confidence 344444444332222 346666666665553333332333334445555556666665555444433
No 160
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=76.13 E-value=6.9 Score=22.36 Aligned_cols=74 Identities=15% Similarity=0.120 Sum_probs=38.8
Q ss_pred CCceeHHHHHHHHh---cCCCCchHHHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHH----HHHHHHhhcCCCC
Q 031791 66 DGYIDFKEFSTFHL---AGGSTDGTKELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKD----CVNMIKKVDADGD 138 (153)
Q Consensus 66 ~~~i~~~ef~~~~~---~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~----~~~~~~~~d~~~~ 138 (153)
||.++-.|--.+-. .....+ ......+...+........+..++.+.+.... +.+. +..++.... .|
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~l~~L~~vA~--AD 86 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLD-AEEAAELLAEAEALEEEAPDLYEFTSLIKEHF---DYEERLELVEALWEVAY--AD 86 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcC-HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHH--hc
Confidence 67788777544332 222222 24445555666555556677777777766543 3333 333444443 35
Q ss_pred CcccHHH
Q 031791 139 GHVNFEE 145 (153)
Q Consensus 139 g~is~~e 145 (153)
|.++-.|
T Consensus 87 G~~~~~E 93 (104)
T cd07313 87 GELDEYE 93 (104)
T ss_pred CCCCHHH
Confidence 5565544
No 161
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=75.69 E-value=4.3 Score=24.97 Aligned_cols=48 Identities=23% Similarity=0.294 Sum_probs=25.1
Q ss_pred CCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCC-------CCCcccHHHHHHHhh
Q 031791 102 NGLISANELHAVLKKLGEKSSLKDCVNMIKKVDAD-------GDGHVNFEEFKKMMT 151 (153)
Q Consensus 102 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~-------~~g~is~~ef~~~l~ 151 (153)
-+.|++.||.++-.-+.. +...+..++..|..+ ..+.|+|+.|..+|.
T Consensus 5 ~~~lsp~eF~qLq~y~ey--s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~ 59 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYSEY--STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMK 59 (138)
T ss_dssp -S-S-HHHHHHHHHHHHH------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHH
T ss_pred eeccCHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHH
Confidence 356777787776665432 234556666666332 345688888888774
No 162
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=74.85 E-value=10 Score=19.92 Aligned_cols=32 Identities=25% Similarity=0.417 Sum_probs=27.9
Q ss_pred CCCccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 031791 102 NGLISANELHAVLKKLGEKSSLKDCVNMIKKV 133 (153)
Q Consensus 102 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 133 (153)
+-.|+.+-++.++.++|..+|+..+..+....
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 44699999999999999999999999888765
No 163
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=74.74 E-value=4.8 Score=16.01 Aligned_cols=16 Identities=50% Similarity=0.721 Sum_probs=10.1
Q ss_pred CCCCCCccCHHHHHHH
Q 031791 26 DKNGDGKISADELKDV 41 (153)
Q Consensus 26 d~~~~g~l~~~e~~~~ 41 (153)
|.+++|.|+.-++..+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 4567777777776654
No 164
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=74.51 E-value=1.2 Score=29.10 Aligned_cols=55 Identities=20% Similarity=0.298 Sum_probs=37.4
Q ss_pred hhhhcC-CCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHh
Q 031791 94 FDLYDM-DQNGLISANELHAVLKKLGEKSSLKDCVNMIKKVDADGDGHVNFEEFKKMM 150 (153)
Q Consensus 94 f~~~d~-~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l 150 (153)
|-.+|+ ..+|+++..|+.-+-..+ ..-+..+..+|..+|.|++|.|++.|+-..+
T Consensus 193 f~qld~~p~d~~~sh~el~pl~ap~--ipme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLRAPL--IPMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred eccccCCCccccccccccccccCCc--ccHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 555565 458888887765322211 1234557778899999999999999986543
No 165
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=73.38 E-value=2.3 Score=27.78 Aligned_cols=47 Identities=19% Similarity=0.314 Sum_probs=28.7
Q ss_pred CCceeHHHHHHHHhcCCCCchHHHHHHHhhhhcCCCCCCccHHHHHHHH
Q 031791 66 DGYIDFKEFSTFHLAGGSTDGTKELKDAFDLYDMDQNGLISANELHAVL 114 (153)
Q Consensus 66 ~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l 114 (153)
+|.++-.|+..+-.-.. ....-+...|..+|.+++|+|+.+|....+
T Consensus 202 d~~~sh~el~pl~ap~i--pme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 202 DGYLSHTELAPLRAPLI--PMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred cccccccccccccCCcc--cHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 67777777655432211 223456667777777777777777766443
No 166
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=72.24 E-value=13 Score=19.82 Aligned_cols=30 Identities=13% Similarity=0.252 Sum_probs=19.3
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhc
Q 031791 105 ISANELHAVLKKLGEKSSLKDCVNMIKKVD 134 (153)
Q Consensus 105 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 134 (153)
++-+++..++...+..++..++..+++.-+
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~ 43 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKED 43 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCC
Confidence 344566667776677777777777766543
No 167
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=72.12 E-value=13 Score=19.91 Aligned_cols=33 Identities=12% Similarity=0.085 Sum_probs=18.3
Q ss_pred CCCHHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 031791 48 KTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLA 80 (153)
Q Consensus 48 ~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 80 (153)
.++......+...|+.=..++|+.++|+..++.
T Consensus 21 ~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~ 53 (70)
T PF12174_consen 21 HLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQ 53 (70)
T ss_pred HCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 344444444444443334566777777777664
No 168
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=71.01 E-value=18 Score=20.91 Aligned_cols=61 Identities=26% Similarity=0.405 Sum_probs=36.1
Q ss_pred hHHHHHHHHHhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhccC---CCCceeHHHHHHHHh
Q 031791 14 SMDEVRKVFNKFDKNGDGKISADELKDVLRSLGSKTSPEEVKRVMDEIDTD---GDGYIDFKEFSTFHL 79 (153)
Q Consensus 14 ~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~---~~~~i~~~ef~~~~~ 79 (153)
.+..++..|..+.. +|+|+...|...+ |..-+.+-..+||..+-.. ....|+..|+..++.
T Consensus 28 ~W~~VE~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~ 91 (100)
T PF08414_consen 28 GWKEVEKRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWE 91 (100)
T ss_dssp -HHHHHHHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHH
T ss_pred CHHHHHHHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHH
Confidence 36777777877754 7788888887653 4555566666677665321 135677777776664
No 169
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=70.21 E-value=20 Score=21.10 Aligned_cols=44 Identities=16% Similarity=0.217 Sum_probs=37.6
Q ss_pred HHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhc
Q 031791 91 KDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKVD 134 (153)
Q Consensus 91 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 134 (153)
-.+|.++...++-..+..+++.++...|....++.++.++..+.
T Consensus 4 vaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~ 47 (112)
T KOG3449|consen 4 VAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK 47 (112)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc
Confidence 34677777788888999999999999999999999999988873
No 170
>PRK00523 hypothetical protein; Provisional
Probab=69.01 E-value=16 Score=19.68 Aligned_cols=32 Identities=25% Similarity=0.384 Sum_probs=28.0
Q ss_pred CCCccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 031791 102 NGLISANELHAVLKKLGEKSSLKDCVNMIKKV 133 (153)
Q Consensus 102 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 133 (153)
+-.|+.+-++.++.++|..+|+..+..+....
T Consensus 37 NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 37 NPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred CcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34689999999999999999999999988776
No 171
>PLN02230 phosphoinositide phospholipase C 4
Probab=65.23 E-value=55 Score=25.69 Aligned_cols=64 Identities=27% Similarity=0.575 Sum_probs=43.6
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHHhC-C--CCCHHHHHHHHHHhccC-------CCCceeHHHHHHHHhc
Q 031791 16 DEVRKVFNKFDKNGDGKISADELKDVLRSLG-S--KTSPEEVKRVMDEIDTD-------GDGYIDFKEFSTFHLA 80 (153)
Q Consensus 16 ~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~-~--~~~~~~~~~l~~~~d~~-------~~~~i~~~ef~~~~~~ 80 (153)
..++.+|..+.. +++.|+.++|...|..-. . ..+...+..++..+-.. ..+.++...|..++..
T Consensus 29 ~ei~~lf~~~s~-~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 29 ADVRDLFEKYAD-GDAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 455677877743 347999999999998764 2 23566677777644221 2345999999998765
No 172
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.65 E-value=20 Score=19.18 Aligned_cols=32 Identities=19% Similarity=0.388 Sum_probs=27.6
Q ss_pred CCCccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 031791 102 NGLISANELHAVLKKLGEKSSLKDCVNMIKKV 133 (153)
Q Consensus 102 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 133 (153)
+-.|+.+-++.++.++|..+|+..++++++..
T Consensus 36 NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i 67 (71)
T COG3763 36 NPPINEEMIRMMMAQMGQKPSEKKINQVMRSI 67 (71)
T ss_pred CCCCCHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 34688999999999999999999999988765
No 173
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=64.48 E-value=29 Score=24.94 Aligned_cols=62 Identities=15% Similarity=0.198 Sum_probs=43.7
Q ss_pred HHHHHHhccCCCCceeHHHHHHHHhcCCCCchHHHHHHHhhhhcCCCCCCccHHHHHHHHHHh
Q 031791 55 KRVMDEIDTDGDGYIDFKEFSTFHLAGGSTDGTKELKDAFDLYDMDQNGLISANELHAVLKKL 117 (153)
Q Consensus 55 ~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 117 (153)
..++..+|..+.|+++--.-...+.....+...++++.+|.... |.+|.+..-.+-+++...
T Consensus 113 aflLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~fl~ev 174 (434)
T KOG4301|consen 113 AFLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHEV 174 (434)
T ss_pred HHHHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHH
Confidence 33455667777777765555555555666777889999998886 567888777777777764
No 174
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=64.06 E-value=29 Score=24.96 Aligned_cols=43 Identities=23% Similarity=0.302 Sum_probs=26.9
Q ss_pred CCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHh
Q 031791 102 NGLISANELHAVLKKLGEKSSLKDCVNMIKKVDADGDGHVNFEEFKKMM 150 (153)
Q Consensus 102 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l 150 (153)
.|.||++|-...+........++.++.+++.++ ||-+||.+++
T Consensus 300 ~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 300 SGRITREEAIELVKEYDGEFPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred cCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 466777777766666544444556666666553 6677777654
No 175
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=63.58 E-value=36 Score=21.69 Aligned_cols=64 Identities=13% Similarity=0.183 Sum_probs=33.0
Q ss_pred eeHHHHHHHHhcCCCCchHHHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 031791 69 IDFKEFSTFHLAGGSTDGTKELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKV 133 (153)
Q Consensus 69 i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 133 (153)
.....|+.-......-.....+..+++.+-..+...++..+|...|- .|...+++++...+..+
T Consensus 66 ~~~r~~iv~~I~~gklkt~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~cG-VGV~VT~E~I~~~V~~~ 129 (164)
T PF04558_consen 66 LPHRPFIVKYIVDGKLKTNLQLDAALKYLKSNPSEPIDVAEFEKACG-VGVVVTPEQIEAAVEKY 129 (164)
T ss_dssp -TTHHHHHHHHHTTS--SHHHHHHHHHHHHHHGG-G--HHHHHHTTT-TT----HHHHHHHHHHH
T ss_pred chhHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHcC-CCeEECHHHHHHHHHHH
Confidence 33444443333333333446777788877666656788888876655 46777888877766544
No 176
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=63.52 E-value=19 Score=18.60 Aligned_cols=31 Identities=19% Similarity=0.428 Sum_probs=24.8
Q ss_pred CccCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 031791 31 GKISADELKDVLRSLGSKTSPEEVKRVMDEI 61 (153)
Q Consensus 31 g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 61 (153)
..+|.+|+...+..++-.++..++--+|..+
T Consensus 8 ~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred HHccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 4578889999998888888888877777765
No 177
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=63.50 E-value=12 Score=20.63 Aligned_cols=30 Identities=10% Similarity=0.214 Sum_probs=12.0
Q ss_pred CCCccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 031791 102 NGLISANELHAVLKKLGEKSSLKDCVNMIKKV 133 (153)
Q Consensus 102 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 133 (153)
.|+||+.++...|.... ++...+..++..+
T Consensus 19 ~G~lT~~eI~~~L~~~~--~~~e~id~i~~~L 48 (82)
T PF03979_consen 19 KGYLTYDEINDALPEDD--LDPEQIDEIYDTL 48 (82)
T ss_dssp HSS-BHHHHHHH-S-S-----HHHHHHHHHHH
T ss_pred cCcCCHHHHHHHcCccC--CCHHHHHHHHHHH
Confidence 35555555555554222 4444555555444
No 178
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=63.14 E-value=17 Score=21.98 Aligned_cols=80 Identities=24% Similarity=0.277 Sum_probs=44.4
Q ss_pred CCCccCHHHHHHHHHHh--CCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhcCCC-CchHHHHHHHhhhhcCCCCCCc
Q 031791 29 GDGKISADELKDVLRSL--GSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLAGGS-TDGTKELKDAFDLYDMDQNGLI 105 (153)
Q Consensus 29 ~~g~l~~~e~~~~l~~~--~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~-~~~~~~~~~~f~~~d~~~~g~i 105 (153)
-||.++..|...+...+ ....+......+...++.-.....++.+++..+..... ......+..++...-.| |.+
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~AD--G~~ 113 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSPEEREDLLRMLIAIAYAD--GEI 113 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHHHHHHHHCTCT--TC-
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHHHHHHHHHhcC--CCC
Confidence 47889999988876655 33444556666666665433345778888777655322 22223455566666555 455
Q ss_pred cHHHH
Q 031791 106 SANEL 110 (153)
Q Consensus 106 ~~~e~ 110 (153)
+..|-
T Consensus 114 ~~~E~ 118 (140)
T PF05099_consen 114 SPEEQ 118 (140)
T ss_dssp SCCHH
T ss_pred CHHHH
Confidence 55443
No 179
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.61 E-value=49 Score=22.88 Aligned_cols=67 Identities=19% Similarity=0.236 Sum_probs=46.0
Q ss_pred hHHHHHHHHHhh-CCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 031791 14 SMDEVRKVFNKF-DKNGDGKISADELKDVLRSLGSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLA 80 (153)
Q Consensus 14 ~~~~l~~~f~~~-d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 80 (153)
+...+...|..+ |+..+-.|-.+.+.+++..+|..+..-..--+--.++...-+..+.++|+..+..
T Consensus 62 s~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~ 129 (260)
T KOG3077|consen 62 SEKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTA 129 (260)
T ss_pred cHHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHH
Confidence 355666677666 5554568889999999999998866544444444455555677889999886554
No 180
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=62.56 E-value=32 Score=20.82 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=19.8
Q ss_pred HHHHHhhhhcCCCCCCccHHHHHHHHHH
Q 031791 89 ELKDAFDLYDMDQNGLISANELHAVLKK 116 (153)
Q Consensus 89 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~ 116 (153)
.+..+...||++++|.|+.-.++..+-.
T Consensus 98 ~ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 98 LLNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 4567788899999999999888877654
No 181
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=61.45 E-value=32 Score=21.19 Aligned_cols=49 Identities=8% Similarity=0.164 Sum_probs=37.6
Q ss_pred CCCCccHHHHHHHHHHhCC---------CCCHHHHHHHHHhhcCCCCC-cccHHHHHHH
Q 031791 101 QNGLISANELHAVLKKLGE---------KSSLKDCVNMIKKVDADGDG-HVNFEEFKKM 149 (153)
Q Consensus 101 ~~g~i~~~e~~~~l~~~~~---------~~~~~~~~~~~~~~d~~~~g-~is~~ef~~~ 149 (153)
|+-.||.+||.+++..-.. .+..+++..+...+.....+ .+|+.|-++.
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 5678999999999987432 35678899999888776655 4998887765
No 182
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=60.59 E-value=33 Score=20.34 Aligned_cols=44 Identities=16% Similarity=0.155 Sum_probs=34.9
Q ss_pred HHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhc
Q 031791 91 KDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKVD 134 (153)
Q Consensus 91 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 134 (153)
-.+|.++-.-++..+|.+++.+++...|.......+..+++.+.
T Consensus 6 vaAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~ 49 (112)
T PTZ00373 6 VAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE 49 (112)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 34555666667778999999999999998888888888877774
No 183
>PRK01844 hypothetical protein; Provisional
Probab=60.52 E-value=25 Score=18.95 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=27.6
Q ss_pred CCccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 031791 103 GLISANELHAVLKKLGEKSSLKDCVNMIKKV 133 (153)
Q Consensus 103 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 133 (153)
-.|+.+-++.++.++|..+|+..+..+....
T Consensus 37 Ppine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 37 PPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred CCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 4689999999999999999999999988776
No 184
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=60.03 E-value=43 Score=25.43 Aligned_cols=63 Identities=21% Similarity=0.190 Sum_probs=47.5
Q ss_pred HHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhh---cC-----CCCCcccHHHHHHHhh
Q 031791 89 ELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKV---DA-----DGDGHVNFEEFKKMMT 151 (153)
Q Consensus 89 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~---d~-----~~~g~is~~ef~~~l~ 151 (153)
.-..+|..+-...++.++.-.|..+|++.|...++..+..++..+ +. ...+.++.+.|.+++.
T Consensus 87 leDLLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~ 157 (622)
T KOG0506|consen 87 LEDLLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIF 157 (622)
T ss_pred hhhhhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhc
Confidence 345578888777789999999999999999988887777776543 32 2235688888887764
No 185
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=59.93 E-value=29 Score=19.44 Aligned_cols=51 Identities=22% Similarity=0.265 Sum_probs=29.3
Q ss_pred CCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 031791 30 DGKISADELKDVLRSLGSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLA 80 (153)
Q Consensus 30 ~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 80 (153)
+-.++..+|...|..........+...|-..+|-..++.|+.=||-.+.+.
T Consensus 20 r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRl 70 (85)
T PF02761_consen 20 RTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTRL 70 (85)
T ss_dssp -SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred CeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHHH
Confidence 345677777777766644444455556666666666677776666555544
No 186
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=59.85 E-value=22 Score=23.12 Aligned_cols=37 Identities=24% Similarity=0.332 Sum_probs=20.8
Q ss_pred cCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhc
Q 031791 98 DMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKVD 134 (153)
Q Consensus 98 d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 134 (153)
..+.+|++..+++.+.+..-+...+.+++..++..-+
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 3467788888888877777666667777777776543
No 187
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=59.72 E-value=3 Score=26.95 Aligned_cols=43 Identities=12% Similarity=0.249 Sum_probs=34.0
Q ss_pred hHHHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHH
Q 031791 86 GTKELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVN 128 (153)
Q Consensus 86 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~ 128 (153)
..+.++.+|..||+++--..+-+++.+++...|.--+..-|..
T Consensus 53 KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A 95 (188)
T COG2818 53 KREAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKA 95 (188)
T ss_pred hHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHH
Confidence 3578999999999999889999999999998776544444443
No 188
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.33 E-value=28 Score=21.62 Aligned_cols=12 Identities=33% Similarity=0.398 Sum_probs=5.4
Q ss_pred CccHHHHHHHHH
Q 031791 104 LISANELHAVLK 115 (153)
Q Consensus 104 ~i~~~e~~~~l~ 115 (153)
.++...|...++
T Consensus 82 a~d~y~fts~l~ 93 (148)
T COG4103 82 AIDLYSFTSVLK 93 (148)
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 189
>PLN02223 phosphoinositide phospholipase C
Probab=58.32 E-value=85 Score=24.32 Aligned_cols=64 Identities=11% Similarity=0.194 Sum_probs=43.8
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHHh----C-CCCCHHHHHHHHHHhccCC--------CCceeHHHHHHHHhc
Q 031791 16 DEVRKVFNKFDKNGDGKISADELKDVLRSL----G-SKTSPEEVKRVMDEIDTDG--------DGYIDFKEFSTFHLA 80 (153)
Q Consensus 16 ~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~----~-~~~~~~~~~~l~~~~d~~~--------~~~i~~~ef~~~~~~ 80 (153)
..++..|..+. .+.|.++.+.+..++.-+ | ...+.++.+.++..+-... .+.++.+.|..++..
T Consensus 16 ~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 16 DLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred HHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 34466677773 667899999999988433 2 3456677777776553322 255999999998876
No 190
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=56.87 E-value=31 Score=22.32 Aligned_cols=32 Identities=16% Similarity=0.180 Sum_probs=15.0
Q ss_pred CCCCCccHHHHHHHHHHhCCCCCHHHHHHHHH
Q 031791 100 DQNGLISANELHAVLKKLGEKSSLKDCVNMIK 131 (153)
Q Consensus 100 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 131 (153)
|.+|.+..+++...++.-+...+.+.+.++..
T Consensus 29 d~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~ 60 (179)
T PRK00819 29 DEEGWVDIDALIEALAKAYKWVTRELLEAVVE 60 (179)
T ss_pred CCCCCEEHHHHHHHHHHccCCCCHHHHHHHHH
Confidence 44455555555554443333344444444443
No 191
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=56.49 E-value=20 Score=18.67 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=17.5
Q ss_pred CccHHHHHHHHHHhCCCCCHHHHHH
Q 031791 104 LISANELHAVLKKLGEKSSLKDCVN 128 (153)
Q Consensus 104 ~i~~~e~~~~l~~~~~~~~~~~~~~ 128 (153)
.|+.++|...++......+.+++..
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~ 53 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKK 53 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHH
Confidence 3777888888887777777766654
No 192
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.33 E-value=47 Score=20.68 Aligned_cols=93 Identities=16% Similarity=0.236 Sum_probs=60.9
Q ss_pred HHHHhhCCCCCCccCHHHHHHHHHHh--CCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhc-CCCCchHHHHHHHhhh
Q 031791 20 KVFNKFDKNGDGKISADELKDVLRSL--GSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLA-GGSTDGTKELKDAFDL 96 (153)
Q Consensus 20 ~~f~~~d~~~~g~l~~~e~~~~l~~~--~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~-~~~~~~~~~~~~~f~~ 96 (153)
-.|+.+.. ||.++..|...+...+ .+..+...+..+......-+.-.+++..|...+.. .......+.+..++++
T Consensus 34 Llf~Vm~A--DG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~e~R~eli~~mweI 111 (148)
T COG4103 34 LLFHVMEA--DGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDEEQRLELIGLMWEI 111 (148)
T ss_pred HHHHHHhc--ccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 56777754 5668888776654333 56677888888888776555566888889888774 3333444556666666
Q ss_pred hcCCCCCCccHHHHHHHHHH
Q 031791 97 YDMDQNGLISANELHAVLKK 116 (153)
Q Consensus 97 ~d~~~~g~i~~~e~~~~l~~ 116 (153)
.-. +|.++..|-.-+++.
T Consensus 112 a~A--Dg~l~e~Ed~vi~Rv 129 (148)
T COG4103 112 AYA--DGELDESEDHVIWRV 129 (148)
T ss_pred HHc--cccccHHHHHHHHHH
Confidence 543 466777776655554
No 193
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=56.24 E-value=31 Score=19.66 Aligned_cols=79 Identities=15% Similarity=0.087 Sum_probs=38.0
Q ss_pred CCccCHHHHHHHHHHhC--C---CCCHHHHHHHHHHhccCCCCceeHHHHHHHHhcCCC-CchHHHHHHHhhhhcCCCCC
Q 031791 30 DGKISADELKDVLRSLG--S---KTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLAGGS-TDGTKELKDAFDLYDMDQNG 103 (153)
Q Consensus 30 ~g~l~~~e~~~~l~~~~--~---~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~-~~~~~~~~~~f~~~d~~~~g 103 (153)
||.++..|...+...+. . ......+..++...-..- ...+..++...+..... ......+..++..... +|
T Consensus 16 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ia~a--DG 92 (111)
T cd07176 16 DGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLALL-RPEGLAALLKAAAKLLPPELRETAFAVAVDIAAA--DG 92 (111)
T ss_pred ccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHc--cC
Confidence 67788888777766553 1 223344455554432220 02334555555554332 2222334444444433 35
Q ss_pred CccHHHHH
Q 031791 104 LISANELH 111 (153)
Q Consensus 104 ~i~~~e~~ 111 (153)
.++..|-.
T Consensus 93 ~~~~~E~~ 100 (111)
T cd07176 93 EVDPEERA 100 (111)
T ss_pred CCCHHHHH
Confidence 66665543
No 194
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=55.33 E-value=37 Score=19.26 Aligned_cols=81 Identities=14% Similarity=0.163 Sum_probs=38.8
Q ss_pred CCccCHHHHHHHHHHh-CCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhcCC---CCchHHHHHHHhhhhcCCCCCCc
Q 031791 30 DGKISADELKDVLRSL-GSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLAGG---STDGTKELKDAFDLYDMDQNGLI 105 (153)
Q Consensus 30 ~g~l~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~---~~~~~~~~~~~f~~~d~~~~g~i 105 (153)
||.++..|...+-..+ ...........+...+........++.+|...+.... +......+..++..--. ||.+
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~l~~l~~vA~A--DG~~ 90 (106)
T cd07316 13 DGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKESDFGLEEYARQFRRACGGRPELLLQLLEFLFQIAYA--DGEL 90 (106)
T ss_pred cCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--cCCC
Confidence 6777777766554333 1223233333333433322222256777777665532 12222334444544433 4677
Q ss_pred cHHHHHH
Q 031791 106 SANELHA 112 (153)
Q Consensus 106 ~~~e~~~ 112 (153)
+..|-.-
T Consensus 91 ~~~E~~~ 97 (106)
T cd07316 91 SEAEREL 97 (106)
T ss_pred CHHHHHH
Confidence 7766543
No 195
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.62 E-value=36 Score=25.10 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=12.8
Q ss_pred CCHHHHHHHHHHhccCCCCceeHHHH
Q 031791 49 TSPEEVKRVMDEIDTDGDGYIDFKEF 74 (153)
Q Consensus 49 ~~~~~~~~l~~~~d~~~~~~i~~~ef 74 (153)
++...+-.+|...|.+++|.++-+||
T Consensus 474 lpnsvlgkiwklad~d~dg~ld~eef 499 (532)
T KOG1954|consen 474 LPNSVLGKIWKLADIDKDGMLDDEEF 499 (532)
T ss_pred CchhHHHhhhhhhcCCcccCcCHHHH
Confidence 33444445555555555555555544
No 196
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=51.83 E-value=78 Score=21.94 Aligned_cols=98 Identities=10% Similarity=0.072 Sum_probs=54.8
Q ss_pred CCCCccCHHHHHHHHHHh--CCCCCHHH---HHHHHHHhccCCCCceeHHHHHHHHhcCCCCchHHHH----HHHhhhhc
Q 031791 28 NGDGKISADELKDVLRSL--GSKTSPEE---VKRVMDEIDTDGDGYIDFKEFSTFHLAGGSTDGTKEL----KDAFDLYD 98 (153)
Q Consensus 28 ~~~g~l~~~e~~~~l~~~--~~~~~~~~---~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~----~~~f~~~d 98 (153)
.-||.++..|.. +...+ ...++... ...+|+. ......++.+|+..+........ +.+ ...|..-=
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~---~k~~~~~l~~~~~~~~~~~~~r~-~l~~~lL~~l~~vA~ 141 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFRE---GKEPDFPLREKLRQFRSVCGGRF-DLLRMFLEIQIQAAF 141 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHH---hcccCCCHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHH
Confidence 348999999988 33333 23444555 5555554 33344788998888766443222 332 33444433
Q ss_pred CCCCCCccHHHHHHHHHHhC-CCCCHHHHHHHHHh
Q 031791 99 MDQNGLISANELHAVLKKLG-EKSSLKDCVNMIKK 132 (153)
Q Consensus 99 ~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~ 132 (153)
. ||.++..|-.-+.+-.. ..++..++..+...
T Consensus 142 A--DG~l~~~E~~~L~~Ia~~Lgis~~df~~~~~~ 174 (267)
T PRK09430 142 A--DGSLHPNERQVLYVIAEELGFSRFQFDQLLRM 174 (267)
T ss_pred h--cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2 47788877544333221 33666666666554
No 197
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=51.67 E-value=31 Score=17.29 Aligned_cols=30 Identities=13% Similarity=0.151 Sum_probs=20.8
Q ss_pred CCCCccHHHHHHHHHHhCCCCCHHHHHHHH
Q 031791 101 QNGLISANELHAVLKKLGEKSSLKDCVNMI 130 (153)
Q Consensus 101 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 130 (153)
..|.|+.+||..-+.......+..++..++
T Consensus 20 a~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~ 49 (53)
T PF08044_consen 20 AEGRLSLDEFDERLDAAYAARTRGELDALF 49 (53)
T ss_pred HCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 358888888887777765555666666554
No 198
>PHA02105 hypothetical protein
Probab=51.08 E-value=34 Score=17.51 Aligned_cols=48 Identities=10% Similarity=0.167 Sum_probs=30.5
Q ss_pred ccCHHHHHHHHHHh---CCCCCHHHHHHHHHHhccCC--CCceeHHHHHHHHh
Q 031791 32 KISADELKDVLRSL---GSKTSPEEVKRVMDEIDTDG--DGYIDFKEFSTFHL 79 (153)
Q Consensus 32 ~l~~~e~~~~l~~~---~~~~~~~~~~~l~~~~d~~~--~~~i~~~ef~~~~~ 79 (153)
.++.++|..++..- ..++..+.+.++-..+..-. --.++|+||-+++-
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~p 56 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIMP 56 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhccccc
Confidence 46788888877544 34566666777666665433 23578888876654
No 199
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=50.37 E-value=52 Score=19.42 Aligned_cols=43 Identities=19% Similarity=0.251 Sum_probs=33.4
Q ss_pred HHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhc
Q 031791 92 DAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKVD 134 (153)
Q Consensus 92 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 134 (153)
.+|.++-..++..+|.+++..++...|.......+..+++.+.
T Consensus 5 aAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~ 47 (109)
T cd05833 5 AAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELE 47 (109)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 3455556667778999999999999998888777777777663
No 200
>KOG2557 consensus Uncharacterized conserved protein, contains TLDc domain [Function unknown]
Probab=49.87 E-value=1e+02 Score=22.67 Aligned_cols=52 Identities=13% Similarity=0.224 Sum_probs=44.3
Q ss_pred CCceeHHHHHHHHhcCCCCchHHHHHHHhhhhcCCCCCCccHHHHHHHHHHh
Q 031791 66 DGYIDFKEFSTFHLAGGSTDGTKELKDAFDLYDMDQNGLISANELHAVLKKL 117 (153)
Q Consensus 66 ~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 117 (153)
+..+++..+..-..........+....++...+.+++|.....++.+.+...
T Consensus 72 ~~~~~l~k~~~~~~~~~~gt~dq~a~mL~~~~~~sgn~~~~~~q~eQ~~~~v 123 (427)
T KOG2557|consen 72 DDKMTLEKLVIAKATYEKGTDDQIAEMLYQTLDVNGNGVLSRSQLEQFLVVV 123 (427)
T ss_pred CccchHHHHhhHHhhhccCcccHHHHHHHHHHhhccccccchhHHHHHHHHH
Confidence 4578899988877777777777888999999999999999999999888864
No 201
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=49.60 E-value=39 Score=17.75 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=26.6
Q ss_pred CCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCC
Q 031791 101 QNGLISANELHAVLKKLGEKSSLKDCVNMIKKVDADG 137 (153)
Q Consensus 101 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~ 137 (153)
.++.++..++...+...|..++++.+...+..++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 3456777788877777777777777777777776543
No 202
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=49.39 E-value=84 Score=21.59 Aligned_cols=49 Identities=14% Similarity=0.385 Sum_probs=33.1
Q ss_pred CCCChhhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhc
Q 031791 8 GANYLGSMDEVRKVFNKFDKNGDGKISADELKDVLRSLGSKTSPEEVKRVMDEID 62 (153)
Q Consensus 8 ~~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d 62 (153)
+.||..+.+.++.++..++.+ +|.++..++...+ ..+...+.+.++.+.
T Consensus 175 ~tLSySEleAv~~IL~~L~~~-egrlse~eLAerl-----GVSRs~ireAlrkLE 223 (251)
T TIGR02787 175 NTLSYSELEAVEHIFEELDGN-EGLLVASKIADRV-----GITRSVIVNALRKLE 223 (251)
T ss_pred HhccHhHHHHHHHHHHHhccc-cccccHHHHHHHH-----CCCHHHHHHHHHHHH
Confidence 457788888888888887532 6888888887654 344555555555553
No 203
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=49.23 E-value=75 Score=20.97 Aligned_cols=13 Identities=31% Similarity=0.659 Sum_probs=7.0
Q ss_pred CCccCHHHHHHHH
Q 031791 30 DGKISADELKDVL 42 (153)
Q Consensus 30 ~g~l~~~e~~~~l 42 (153)
+|.||.++....+
T Consensus 11 DGTITl~Ds~~~i 23 (220)
T COG4359 11 DGTITLNDSNDYI 23 (220)
T ss_pred CCceEecchhHHH
Confidence 4555555555544
No 204
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=48.93 E-value=40 Score=24.30 Aligned_cols=61 Identities=11% Similarity=0.077 Sum_probs=43.5
Q ss_pred HHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHhh
Q 031791 90 LKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKVDADGDGHVNFEEFKKMMT 151 (153)
Q Consensus 90 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 151 (153)
+......+|..+.|.+++--.+-.+..+...--.+.+..||.... +.+|.+.+-.|.+++.
T Consensus 112 laflLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~fl~ 172 (434)
T KOG4301|consen 112 LAFLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLH 172 (434)
T ss_pred HHHHHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHHHH
Confidence 445566789999999999888888887755444567788888874 5677666666655543
No 205
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=47.74 E-value=83 Score=21.04 Aligned_cols=111 Identities=19% Similarity=0.237 Sum_probs=60.0
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHHhC--C-CCCHHHHHHHHHHhccCCCCceeHHHHHHHHhc-CCCC-chH-HH
Q 031791 16 DEVRKVFNKFDKNGDGKISADELKDVLRSLG--S-KTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLA-GGST-DGT-KE 89 (153)
Q Consensus 16 ~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~--~-~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~-~~~~-~~~-~~ 89 (153)
.++..+....-..+.|.|+..|+...+.... . ..+++++.+....+..-+.| +....|-..... ...+ ... ..
T Consensus 97 ~qi~e~c~~~~~~~GGii~L~dl~~~~nr~R~g~~lISp~Di~~A~~~l~~lg~g-~~l~~~~sg~~vv~s~~~~e~~~~ 175 (223)
T PF04157_consen 97 VQIAEVCLATRSKNGGIISLSDLYCRYNRARGGSELISPEDILRACKLLEVLGLG-FRLRKFGSGVKVVQSVPYSELSKD 175 (223)
T ss_dssp HHHHHHHHHHCCTTTSEEEHHHHHHHHHHCTTTSST--HHHHHHHHHHHCCCTSS-EEEEEETTTEEEEECST-CHH-HH
T ss_pred HHHHHHHHHHHhcCCCEEEHHHHHHHHHHhcccCCCcCHHHHHHHHHHHHHcCCC-eEEEEeCCCcEEEEeCCchhhhHH
Confidence 4444555555455567888888888876653 1 45677777777777655544 444433311111 1122 222 44
Q ss_pred HHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 031791 90 LKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKK 132 (153)
Q Consensus 90 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 132 (153)
...+.........|.+|..++...+. ++...+.+.+..
T Consensus 176 ~~~il~~~~~~~~g~vt~~~l~~~~~-----ws~~~a~~~L~~ 213 (223)
T PF04157_consen 176 QSRILELAEEENGGGVTASELAEKLG-----WSVERAKEALEE 213 (223)
T ss_dssp HHHHHHHH--TTTSEEEHHHHHHHHT-----B-HHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHhC-----CCHHHHHHHHHH
Confidence 55566666345568888888876555 455455544443
No 206
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=47.21 E-value=73 Score=22.92 Aligned_cols=72 Identities=15% Similarity=0.170 Sum_probs=41.3
Q ss_pred HhCCCCCHHHHHHHHHHhcc--CCCCceeHHHHHHHHhcCCCCchHHHHHHHhhhhcCCCCCCccHHHHHHHHH
Q 031791 44 SLGSKTSPEEVKRVMDEIDT--DGDGYIDFKEFSTFHLAGGSTDGTKELKDAFDLYDMDQNGLISANELHAVLK 115 (153)
Q Consensus 44 ~~~~~~~~~~~~~l~~~~d~--~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~ 115 (153)
.+...+..++++.++..+.. |..-.+-=++|-..+....+......+..+-+.+..+=+|++-+.|+.+-+.
T Consensus 33 ~~dis~~~~e~~A~l~E~r~DyNr~HF~R~~eF~~~~d~l~~e~r~~FidFLerScTaEFSGflLYKEl~rrlk 106 (351)
T CHL00185 33 NYDISSNIEEIEAILEEFRADYNQQHFIRDNEFNQSWSNLDEKTKSLFVEFLERSCTAEFSGFLLYKELSRKLK 106 (351)
T ss_pred hcCCchhHHHHHHHHHHHHhCccccccccChhhhhchhhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhc
Confidence 44566667777777776643 3333344455544333333333334455555566666678888888776665
No 207
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=47.12 E-value=72 Score=20.13 Aligned_cols=79 Identities=15% Similarity=0.275 Sum_probs=45.6
Q ss_pred HHHHhh-CCCCCC-ccCHHHHHHHHHHhC----CCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhc-----CCCCchHH
Q 031791 20 KVFNKF-DKNGDG-KISADELKDVLRSLG----SKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLA-----GGSTDGTK 88 (153)
Q Consensus 20 ~~f~~~-d~~~~g-~l~~~e~~~~l~~~~----~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~-----~~~~~~~~ 88 (153)
+.|..+ |+..+| .|+-.++..+++..+ -..+.-+....|..+.-...+.++|++|...+.. ....+..+
T Consensus 19 ~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ela~~R~k~Ks~ee 98 (180)
T KOG4070|consen 19 RAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEELATKRFKGKSKEE 98 (180)
T ss_pred HHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHHHHhhhcCCCHHH
Confidence 334444 333344 477777888876553 3345555566676665556678999999555443 22234445
Q ss_pred HHHHHhhhhc
Q 031791 89 ELKDAFDLYD 98 (153)
Q Consensus 89 ~~~~~f~~~d 98 (153)
.+..+...+-
T Consensus 99 ~l~~I~~lla 108 (180)
T KOG4070|consen 99 ALDAICQLLA 108 (180)
T ss_pred HHHHHHHHHh
Confidence 5665555553
No 208
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=46.83 E-value=67 Score=19.69 Aligned_cols=49 Identities=16% Similarity=0.116 Sum_probs=26.9
Q ss_pred CCceeHHHHHHHHhc--------CCCCchHHHHHHHhhhhcCCCCCCccHHHHHHHHHH
Q 031791 66 DGYIDFKEFSTFHLA--------GGSTDGTKELKDAFDLYDMDQNGLISANELHAVLKK 116 (153)
Q Consensus 66 ~~~i~~~ef~~~~~~--------~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~ 116 (153)
+|.|+..+|+..+.. .....+...+..+|+.+= |....+..|+......
T Consensus 42 ng~IsVreFVr~La~S~~yr~~f~~~~~~~R~iEl~~khlL--GR~p~~~~Ei~~~~~i 98 (131)
T PF00427_consen 42 NGQISVREFVRALAKSELYRKRFFEPNSNYRFIELAFKHLL--GRAPYNQAEISAYSQI 98 (131)
T ss_dssp TTSS-HHHHHHHHHTSHHHHHHHTTTS-HHHHHHHHHHHHC--SS--SSHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHcCHHHHHHHcccccchHHHHHHHHHHh--CCCCCCHHHHHHHHHH
Confidence 578999999998776 233444455666666552 2334445555554443
No 209
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=46.22 E-value=21 Score=15.84 Aligned_cols=12 Identities=33% Similarity=0.592 Sum_probs=6.6
Q ss_pred CcccHHHHHHHh
Q 031791 139 GHVNFEEFKKMM 150 (153)
Q Consensus 139 g~is~~ef~~~l 150 (153)
|.|++++++++.
T Consensus 3 ~~i~~~~~~d~a 14 (33)
T PF09373_consen 3 GTISKEEYLDMA 14 (33)
T ss_pred ceecHHHHHHHH
Confidence 455566555544
No 210
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=46.16 E-value=81 Score=20.49 Aligned_cols=102 Identities=14% Similarity=0.202 Sum_probs=62.3
Q ss_pred HHHHHHHHHhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHH----hccCCCCceeHHHHHHHHhcCC--------
Q 031791 15 MDEVRKVFNKFDKNGDGKISADELKDVLRSLGSKTSPEEVKRVMDE----IDTDGDGYIDFKEFSTFHLAGG-------- 82 (153)
Q Consensus 15 ~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~----~d~~~~~~i~~~ef~~~~~~~~-------- 82 (153)
...++..|..+|+..-..++.+++..++..-+.-.....+..+..- .+.... ++.+|+-.+....
T Consensus 52 r~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi~NA~~~l~i~~e---sf~~ylW~fv~~~Pi~~~~~~ 128 (179)
T TIGR00624 52 RENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIANARAALQLEQN---DLVEFLWSFVNHQPQPRQRPT 128 (179)
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHHc---cHHHHHHhccCCCCccCCccc
Confidence 5677888999998888889999999998877665555555443331 111111 6777764432111
Q ss_pred ---CCchHHHHHHHhhhhcCCCCCCccHHHHHHHHHHhCC
Q 031791 83 ---STDGTKELKDAFDLYDMDQNGLISANELHAVLKKLGE 119 (153)
Q Consensus 83 ---~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~ 119 (153)
.+........+.+.+-+.|-..+...-...+|++.|.
T Consensus 129 ~~~~p~~t~~S~~lskdLKkrGfkFvGpt~~ysfmqA~G~ 168 (179)
T TIGR00624 129 DSEIPSSTPESKAMSKELKKRGFRFVGPTICYALMQATGM 168 (179)
T ss_pred cccCCCCCHHHHHHHHHHHHcCCeecChHHHHHHHHHHCC
Confidence 1122233455555666666667777777777777663
No 211
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=45.93 E-value=75 Score=22.93 Aligned_cols=87 Identities=13% Similarity=0.128 Sum_probs=47.1
Q ss_pred HhCCCCCHHHHHHHHHHhcc--CCCCceeHHHHHHHHhcCCCCchHHHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCC
Q 031791 44 SLGSKTSPEEVKRVMDEIDT--DGDGYIDFKEFSTFHLAGGSTDGTKELKDAFDLYDMDQNGLISANELHAVLKKLGEKS 121 (153)
Q Consensus 44 ~~~~~~~~~~~~~l~~~~d~--~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~ 121 (153)
.+...+..++++.++..+.. |..-.+--++|-..+...........+..+-+.+..+=+|++-+.|+.+-+..-.
T Consensus 37 ~~d~s~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~d~l~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~~n--- 113 (355)
T PRK13654 37 KLDLSPNREELDAILEEMRADYNRHHFVRDEEFDQDWDHLDPETRKEFIDFLERSCTAEFSGFLLYKELSRRLKDRN--- 113 (355)
T ss_pred hcCCchhHHHHHHHHHHHHhCcccccccCChhhhhchhhCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhccccC---
Confidence 44566667777777776633 3333344455544333333333334455555566666678888877776665321
Q ss_pred CHHHHHHHHHhhcC
Q 031791 122 SLKDCVNMIKKVDA 135 (153)
Q Consensus 122 ~~~~~~~~~~~~d~ 135 (153)
..+.++|..+..
T Consensus 114 --P~lae~F~lMaR 125 (355)
T PRK13654 114 --PLLAELFQLMAR 125 (355)
T ss_pred --cHHHHHHHHHhh
Confidence 344555554433
No 212
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=45.89 E-value=61 Score=19.13 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 031791 107 ANELHAVLKKLGEKSSLKDCVNMIKKV 133 (153)
Q Consensus 107 ~~e~~~~l~~~~~~~~~~~~~~~~~~~ 133 (153)
.+|++.++.......++++++.|+...
T Consensus 81 ~dElrai~~~~~~~~~~e~l~~ILd~l 107 (112)
T PRK14981 81 RDELRAIFAKERYTLSPEELDEILDIV 107 (112)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 445555555554455555555555443
No 213
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=45.86 E-value=55 Score=18.40 Aligned_cols=26 Identities=19% Similarity=0.148 Sum_probs=16.6
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHH
Q 031791 105 ISANELHAVLKKLGEKSSLKDCVNMI 130 (153)
Q Consensus 105 i~~~e~~~~l~~~~~~~~~~~~~~~~ 130 (153)
|+.+++.++.+-....++++++..+.
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~ 26 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFA 26 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 45667777777666667776655443
No 214
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=45.24 E-value=76 Score=22.70 Aligned_cols=72 Identities=15% Similarity=0.123 Sum_probs=34.4
Q ss_pred HhCCCCCHHHHHHHHHHhccC--CCCceeHHHHHHHHhcCCCCchHHHHHHHhhhhcCCCCCCccHHHHHHHHH
Q 031791 44 SLGSKTSPEEVKRVMDEIDTD--GDGYIDFKEFSTFHLAGGSTDGTKELKDAFDLYDMDQNGLISANELHAVLK 115 (153)
Q Consensus 44 ~~~~~~~~~~~~~l~~~~d~~--~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~ 115 (153)
.+...+..++++.++..+..| ..-.+-=++|-.......+......+..+-+.+..+=+|++-+.|+.+-++
T Consensus 27 ~~d~s~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~l~~e~r~~FidFLerScTaEFSGflLYKEl~rrlk 100 (337)
T TIGR02029 27 NLDVSPVENEWDAMLAEMKADYNRHHFVRNEEFDQSWEHIDGELRQAFIEFLERSCTSEFSGFLLYKELSRRLK 100 (337)
T ss_pred hcCCchhHHHHHHHHHHHHhCccccccccChhhhcchhhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhcC
Confidence 345555566666666655332 222333344433222222222223344444455555567777766665554
No 215
>COG5562 Phage envelope protein [General function prediction only]
Probab=44.84 E-value=22 Score=21.81 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=15.1
Q ss_pred HhhcCCCCCcccHHHHHHHhhc
Q 031791 131 KKVDADGDGHVNFEEFKKMMTR 152 (153)
Q Consensus 131 ~~~d~~~~g~is~~ef~~~l~~ 152 (153)
.....+..|..||++|++.+..
T Consensus 79 ~al~~~qsGqttF~ef~~~la~ 100 (137)
T COG5562 79 TALRRHQSGQTTFEEFCSALAE 100 (137)
T ss_pred HHHHHHhcCCccHHHHHHHHHh
Confidence 3445566788888888877653
No 216
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=44.52 E-value=1.3e+02 Score=22.40 Aligned_cols=86 Identities=19% Similarity=0.237 Sum_probs=55.8
Q ss_pred CCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhcCCCCchHHHHHHHhhhhcCCCCC---Cc
Q 031791 29 GDGKISADELKDVLRSLGSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLAGGSTDGTKELKDAFDLYDMDQNG---LI 105 (153)
Q Consensus 29 ~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g---~i 105 (153)
....+.+..|.+.|....-..+--+...+-..+|-..++.|+-=||=.+-+... + ...+..-+..+..-+-| ++
T Consensus 187 ~k~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEFDvFTRLFq-P--w~tllkNWq~LavtHPGYmAFL 263 (563)
T KOG1785|consen 187 KKTIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEFDVFTRLFQ-P--WKTLLKNWQTLAVTHPGYMAFL 263 (563)
T ss_pred CcccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehhhhHHHhhc-c--HHHHHHhhhhhhccCCceeEEe
Confidence 355688888988887764444445555666667777788888666654443311 1 23344445556666666 58
Q ss_pred cHHHHHHHHHHh
Q 031791 106 SANELHAVLKKL 117 (153)
Q Consensus 106 ~~~e~~~~l~~~ 117 (153)
+++|++.-++.+
T Consensus 264 TYDEVk~RLqk~ 275 (563)
T KOG1785|consen 264 TYDEVKARLQKY 275 (563)
T ss_pred eHHHHHHHHHHH
Confidence 999999988875
No 217
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=43.53 E-value=35 Score=18.45 Aligned_cols=13 Identities=15% Similarity=0.273 Sum_probs=7.5
Q ss_pred CCceeHHHHHHHH
Q 031791 66 DGYIDFKEFSTFH 78 (153)
Q Consensus 66 ~~~i~~~ef~~~~ 78 (153)
.|++.-+||..++
T Consensus 28 ~Gkv~~ee~n~~~ 40 (75)
T TIGR02675 28 SGKLRGEEINSLL 40 (75)
T ss_pred cCcccHHHHHHHH
Confidence 4556666665554
No 218
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=42.74 E-value=82 Score=19.53 Aligned_cols=32 Identities=3% Similarity=0.177 Sum_probs=23.3
Q ss_pred CccHHHHHHHHHHhCCCCCHHHHHHHHHhhcC
Q 031791 104 LISANELHAVLKKLGEKSSLKDCVNMIKKVDA 135 (153)
Q Consensus 104 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 135 (153)
..|+++++.+..-+..+++++++..++..++.
T Consensus 26 IWT~eDV~~~a~gme~~lTd~E~~aVL~~I~~ 57 (139)
T PF07128_consen 26 IWTREDVRALADGMEYNLTDDEARAVLARIGD 57 (139)
T ss_pred EecHHHHHHHHhcCCCCCCHHHHHHHHHHHhc
Confidence 45777777777766677788888888877754
No 219
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=42.60 E-value=74 Score=18.97 Aligned_cols=30 Identities=23% Similarity=0.245 Sum_probs=23.8
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhc
Q 031791 105 ISANELHAVLKKLGEKSSLKDCVNMIKKVD 134 (153)
Q Consensus 105 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 134 (153)
-|..|++.++...+..++.++++.++...+
T Consensus 80 ~t~~ElRsIla~e~~~~s~E~l~~Ildiv~ 109 (114)
T COG1460 80 RTPDELRSILAKERVMLSDEELDKILDIVD 109 (114)
T ss_pred CCHHHHHHHHHHccCCCCHHHHHHHHHHHH
Confidence 366789999998888888888888876553
No 220
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=42.38 E-value=1.1e+02 Score=21.80 Aligned_cols=71 Identities=17% Similarity=0.120 Sum_probs=29.8
Q ss_pred hCCCCCHHHHHHHHHHhcc--CCCCceeHHHHHHHHhcCCCCchHHHHHHHhhhhcCCCCCCccHHHHHHHHH
Q 031791 45 LGSKTSPEEVKRVMDEIDT--DGDGYIDFKEFSTFHLAGGSTDGTKELKDAFDLYDMDQNGLISANELHAVLK 115 (153)
Q Consensus 45 ~~~~~~~~~~~~l~~~~d~--~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~ 115 (153)
+...+..++++.++..+.. |..-.+-=++|-..............+..+-+.+..+=+|++-+.|+.+-++
T Consensus 18 ~dis~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~~~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk 90 (323)
T cd01047 18 LDISKNREEFEAMLAEFKADYNRHHFVRNDEFDQAADKIDPELRQIFLEFLERSCTSEFSGFLLYKELGRRLK 90 (323)
T ss_pred cCCchhHHHHHHHHHHHHhCcccccccCCchhhhhhhhCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHcc
Confidence 3444445555555554422 2222233333333222222222223333344444445556666666655444
No 221
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=41.83 E-value=29 Score=20.10 Aligned_cols=13 Identities=31% Similarity=0.388 Sum_probs=5.7
Q ss_pred ccHHHHHHHHHHh
Q 031791 105 ISANELHAVLKKL 117 (153)
Q Consensus 105 i~~~e~~~~l~~~ 117 (153)
++.+|+..++...
T Consensus 36 ~s~~eL~~~l~~~ 48 (105)
T cd03035 36 LDAATLERWLAKV 48 (105)
T ss_pred CCHHHHHHHHHHh
Confidence 4444444444433
No 222
>TIGR02574 stabl_TIGR02574 putative addiction module component, TIGR02574 family. Members of this family are bacterial proteins, typically are about 75 amino acids long, always found as part of a pair (at least) of two small genes. The other in the pair always belongs to a subfamily of the larger family pfam05016 (although not necessarily scoring above the designated cutoff), which contains plasmid stabilization proteins. It is likely that this protein and its pfam05016 member partner comprise some form of addiction module, although these gene pairs usually are found on the bacterial main chromosome.
Probab=41.58 E-value=53 Score=17.01 Aligned_cols=19 Identities=5% Similarity=0.146 Sum_probs=10.7
Q ss_pred CChhh-HHHHHHHHHhhCCC
Q 031791 10 NYLGS-MDEVRKVFNKFDKN 28 (153)
Q Consensus 10 ~~~~~-~~~l~~~f~~~d~~ 28 (153)
|++.+ +..+..+|..++.+
T Consensus 3 L~~~ERl~Lve~LwdSL~~~ 22 (63)
T TIGR02574 3 LSPDERIQLVEDIWDSIAAE 22 (63)
T ss_pred CCHHHHHHHHHHHHHHhccC
Confidence 44333 45556777777644
No 223
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=41.38 E-value=42 Score=16.18 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=15.2
Q ss_pred CHHHHHHHHHHhCCCCCHHHH
Q 031791 34 SADELKDVLRSLGSKTSPEEV 54 (153)
Q Consensus 34 ~~~e~~~~l~~~~~~~~~~~~ 54 (153)
+.+++..+.+..|+..+..++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 667777777777777776654
No 224
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=40.81 E-value=84 Score=19.55 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=24.8
Q ss_pred HHHHHHHhCCCCCHHHHHHHH----------HhhcCCCCCcccHHHHHHHh
Q 031791 110 LHAVLKKLGEKSSLKDCVNMI----------KKVDADGDGHVNFEEFKKMM 150 (153)
Q Consensus 110 ~~~~l~~~~~~~~~~~~~~~~----------~~~d~~~~g~is~~ef~~~l 150 (153)
+.+-++.+|...+++++..++ ..+-.+.+|..+...|.+++
T Consensus 95 l~~e~eklGi~Vs~~El~d~l~~g~~p~~~~~~~f~~~tG~Fd~~~l~~fl 145 (145)
T PF13623_consen 95 LEQEFEKLGITVSDDELQDMLNQGTNPMLQQNPFFNPQTGQFDRAKLKQFL 145 (145)
T ss_pred HHHHHHHhCCccCHHHHHHHHhcCCCchhhhccccCcccCCcCHHHHHhhC
Confidence 334444556666666666665 11223578888888887664
No 225
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=40.33 E-value=1.1e+02 Score=21.31 Aligned_cols=25 Identities=8% Similarity=0.053 Sum_probs=13.0
Q ss_pred HhhhhcCCCCCCccHHHHHHHHHHh
Q 031791 93 AFDLYDMDQNGLISANELHAVLKKL 117 (153)
Q Consensus 93 ~f~~~d~~~~g~i~~~e~~~~l~~~ 117 (153)
+...|........+..++.+.+...
T Consensus 97 a~~lf~~~k~~~~~l~~~~~~~~~~ 121 (267)
T PRK09430 97 AQQAFREGKEPDFPLREKLRQFRSV 121 (267)
T ss_pred HHHHHHHhcccCCCHHHHHHHHHHH
Confidence 3444444444456666666555543
No 226
>PRK04387 hypothetical protein; Provisional
Probab=39.75 E-value=73 Score=18.11 Aligned_cols=62 Identities=26% Similarity=0.316 Sum_probs=40.2
Q ss_pred CChhhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHh-CCCCCHHHHHHHHHHhccCCCCceeHH
Q 031791 10 NYLGSMDEVRKVFNKFDKNGDGKISADELKDVLRSL-GSKTSPEEVKRVMDEIDTDGDGYIDFK 72 (153)
Q Consensus 10 ~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~~~~~i~~~ 72 (153)
-|.+++-.+-..|......-...|..++|....+.. ...++..+=.+|++.|... .|.-.|.
T Consensus 11 WsteEii~Vi~F~~~VE~aYE~gv~re~ll~~Y~~FK~VVpsK~EEKql~reFe~~-SGYS~Y~ 73 (90)
T PRK04387 11 WSTEEMISVLHFFNAVEKAYEKGVDAEELLDAYRRFKEIVPSKAEEKQIDREFEKV-SGYSIYR 73 (90)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH-cCCcHHH
Confidence 456667677777776655444557888888877766 4466677777777777643 3544444
No 227
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=39.23 E-value=83 Score=18.60 Aligned_cols=31 Identities=10% Similarity=0.203 Sum_probs=14.4
Q ss_pred CCCHHHHHHHHHhhcCCCCCcccHHHHHHHh
Q 031791 120 KSSLKDCVNMIKKVDADGDGHVNFEEFKKMM 150 (153)
Q Consensus 120 ~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l 150 (153)
.++.+|-..+....+.-..|.|++...+.++
T Consensus 65 ~ls~~EK~~~~~~i~~yr~g~i~l~~~l~~L 95 (117)
T PF08349_consen 65 KLSSEEKQHFLDLIEDYREGKIPLSVPLTLL 95 (117)
T ss_pred hCCHHHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 3444444444444444445555554444433
No 228
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=38.81 E-value=1.2e+02 Score=24.24 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=11.9
Q ss_pred HHHhhhhcCCCCCCccHHHHHHHHH
Q 031791 91 KDAFDLYDMDQNGLISANELHAVLK 115 (153)
Q Consensus 91 ~~~f~~~d~~~~g~i~~~e~~~~l~ 115 (153)
..++...|.+..|.+..+++..++.
T Consensus 64 ~~~~~~~~~~~~~y~~~~~~~~ll~ 88 (646)
T KOG0039|consen 64 ALIMEELDPDHKGYITNEDLEILLL 88 (646)
T ss_pred HHhhhhccccccceeeecchhHHHH
Confidence 3344444555555555544444444
No 229
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=38.74 E-value=53 Score=16.24 Aligned_cols=29 Identities=28% Similarity=0.405 Sum_probs=18.0
Q ss_pred CCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhcC
Q 031791 102 NGLISANELHAVLKKLGEKSSLKDCVNMIKKVDA 135 (153)
Q Consensus 102 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 135 (153)
.|.|+..+++..+. .+..-+..++..+|.
T Consensus 8 ~~~itv~~~rd~lg-----~sRK~ai~lLE~lD~ 36 (50)
T PF09107_consen 8 NGEITVAEFRDLLG-----LSRKYAIPLLEYLDR 36 (50)
T ss_dssp TSSBEHHHHHHHHT-----S-HHHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHC-----ccHHHHHHHHHHHhc
Confidence 56777777776664 455566666666654
No 230
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.21 E-value=9.2 Score=24.70 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=32.7
Q ss_pred HHHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHH
Q 031791 87 TKELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMI 130 (153)
Q Consensus 87 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 130 (153)
.+.++.+|.-||+..--..+.+++.+++..-+.--+..-+..++
T Consensus 52 r~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi 95 (179)
T TIGR00624 52 RENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATI 95 (179)
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHH
Confidence 47788999999988888888889988888766554544444444
No 231
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=38.15 E-value=1.6e+02 Score=21.44 Aligned_cols=97 Identities=18% Similarity=0.204 Sum_probs=54.7
Q ss_pred CCCCCCccCHHHHHHHHHHhCCCCC----------HHHHHHHHHHhccCC-CCceeHHH-H-HHHHhcCCCCchHHHHHH
Q 031791 26 DKNGDGKISADELKDVLRSLGSKTS----------PEEVKRVMDEIDTDG-DGYIDFKE-F-STFHLAGGSTDGTKELKD 92 (153)
Q Consensus 26 d~~~~g~l~~~e~~~~l~~~~~~~~----------~~~~~~l~~~~d~~~-~~~i~~~e-f-~~~~~~~~~~~~~~~~~~ 92 (153)
+.++.+.++..+-..++..++.+.. ...+..++..+...+ .|-|-..- - ..-+...........+..
T Consensus 135 ~~~~~~~lp~~eR~~lLe~lg~~~v~~~~~~~~~d~~~l~~~l~~~~~~G~EGVVlK~~~~~~~~~Ky~t~~~~~~di~~ 214 (342)
T cd07894 135 KKNTGRPLPVEERRELLEKYGLPTVRLFGEFTADEIEELKEIIRELDKEGREGVVLKDPDMRVPPLKYTTSYSNCSDIRY 214 (342)
T ss_pred EcCCCCCCCHHHHHHHHHhcCCCCcceEEEEecCCHHHHHHHHHHHHHCCCceEEEeccccccCcceeecCCCCcHHHHH
Confidence 3344567889999999888865422 256666666665432 44332111 0 111222333444567777
Q ss_pred HhhhhcCCCCCCccHHHHHHHHHHhCCCCC
Q 031791 93 AFDLYDMDQNGLISANELHAVLKKLGEKSS 122 (153)
Q Consensus 93 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~ 122 (153)
+|+.+-.-+.+++.-.=++..+.......+
T Consensus 215 ~~~~~~d~~~~~~~~Ri~R~~~~~~E~~~~ 244 (342)
T cd07894 215 AFRYPFDLGRDFFFSRIVREGFQSVELGES 244 (342)
T ss_pred HhhhccccCchHHHHHHHHHHHHHHHhCCc
Confidence 887776666666666666666665544444
No 232
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=37.81 E-value=35 Score=22.26 Aligned_cols=44 Identities=16% Similarity=0.380 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHH
Q 031791 15 MDEVRKVFNKFDKNGDGKISADELKDVLRSLGSKTSPEEVKRVM 58 (153)
Q Consensus 15 ~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~ 58 (153)
.+.++..|..+|+.+--.++.+++..++...|+......++.+.
T Consensus 54 Re~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~i 97 (188)
T COG2818 54 REAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKATI 97 (188)
T ss_pred HHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHHH
Confidence 56788899999999888999999999998877766655554443
No 233
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=37.59 E-value=90 Score=18.56 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=31.2
Q ss_pred HhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhc
Q 031791 93 AFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKVD 134 (153)
Q Consensus 93 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 134 (153)
+|.+.-..++..+|.+++..++...|.......+..+++.+.
T Consensus 6 Ayll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~ 47 (113)
T PLN00138 6 AYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVK 47 (113)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc
Confidence 344444456667999999999999998877777777776663
No 234
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=37.02 E-value=56 Score=15.99 Aligned_cols=47 Identities=21% Similarity=0.280 Sum_probs=33.4
Q ss_pred CCCCCChhhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHH
Q 031791 6 SNGANYLGSMDEVRKVFNKFDKNGDGKISADELKDVLRSLGSKTSPEEVKRVMD 59 (153)
Q Consensus 6 ~~~~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~ 59 (153)
....+++.+...|+..|.. +.+.+..+...+...+|+ +...+..-|.
T Consensus 3 ~r~~~~~~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~l--~~~qV~~WF~ 49 (59)
T cd00086 3 KRTRFTPEQLEELEKEFEK-----NPYPSREEREELAKELGL--TERQVKIWFQ 49 (59)
T ss_pred CCCcCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHCc--CHHHHHHHHH
Confidence 3456788899999999986 457788888888777664 3555554443
No 235
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=36.99 E-value=75 Score=17.43 Aligned_cols=42 Identities=21% Similarity=0.339 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhhcCCC-CCcccHHHHHHHh
Q 031791 107 ANELHAVLKKLGEKSSLKDCVNMIKKVDADG-DGHVNFEEFKKMM 150 (153)
Q Consensus 107 ~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~-~g~is~~ef~~~l 150 (153)
.+++...|. |.+.+.+.+.+.+...+... -+.++.++|.+++
T Consensus 44 i~~le~~L~--G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 44 IEELEEALI--GCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp HHHHHHHHT--TCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHHH--hcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 556665553 66778888888888775442 3578888888764
No 236
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=36.50 E-value=76 Score=20.68 Aligned_cols=36 Identities=28% Similarity=0.378 Sum_probs=22.5
Q ss_pred CCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 031791 26 DKNGDGKISADELKDVLRSLGSKTSPEEVKRVMDEI 61 (153)
Q Consensus 26 d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 61 (153)
..+.+|++..+++.+.+..-+...+.+++.++...-
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~ 61 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETD 61 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhC
Confidence 357789999999999888777777888888877653
No 237
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.85 E-value=72 Score=23.67 Aligned_cols=56 Identities=23% Similarity=0.219 Sum_probs=38.3
Q ss_pred HHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHH
Q 031791 90 LKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKVDADGDGHVNFEEFKK 148 (153)
Q Consensus 90 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~ 148 (153)
...+|-.+.+ -+|.|+-..-+..+- +..+....+-.+++..|.+.+|.++-+||.-
T Consensus 446 yde~fy~l~p-~~gk~sg~~ak~~mv--~sklpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 446 YDEIFYTLSP-VNGKLSGRNAKKEMV--KSKLPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred hHhhhhcccc-cCceeccchhHHHHH--hccCchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 3445555543 356776655554443 3345566788999999999999999999863
No 238
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=35.82 E-value=1.4e+02 Score=22.47 Aligned_cols=23 Identities=30% Similarity=0.587 Sum_probs=10.6
Q ss_pred HHHHHHHHHhccCCCCceeHHHH
Q 031791 52 EEVKRVMDEIDTDGDGYIDFKEF 74 (153)
Q Consensus 52 ~~~~~l~~~~d~~~~~~i~~~ef 74 (153)
+-+..+-+.+|.|.+|.|+.+|=
T Consensus 68 EAir~iHrqmDDD~nG~Id~~ES 90 (575)
T KOG4403|consen 68 EAIRDIHRQMDDDHNGSIDVEES 90 (575)
T ss_pred HHHHHHHHhcccccCCCcccccc
Confidence 33444444444444555554443
No 239
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=35.33 E-value=69 Score=16.54 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=12.4
Q ss_pred HHHHHHHhhhh--cCCCCCCccHHHHHHHHHH
Q 031791 87 TKELKDAFDLY--DMDQNGLISANELHAVLKK 116 (153)
Q Consensus 87 ~~~~~~~f~~~--d~~~~g~i~~~e~~~~l~~ 116 (153)
.+++....+.+ ++ +...++.+|++.++..
T Consensus 14 l~RIh~mLkmf~~~~-~~~~~s~~eL~~fL~~ 44 (60)
T PF08672_consen 14 LDRIHSMLKMFPKDP-GGYDISLEELQEFLDR 44 (60)
T ss_dssp HHHHHHHHHHH-GGG---TT--HHHHHHHHHH
T ss_pred HHHHHHHHHhccCCC-CCCCCCHHHHHHHHHH
Confidence 34555555555 22 2234555555555553
No 240
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=35.28 E-value=44 Score=29.52 Aligned_cols=37 Identities=24% Similarity=0.397 Sum_probs=31.5
Q ss_pred CchHHHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCC
Q 031791 84 TDGTKELKDAFDLYDMDQNGLISANELHAVLKKLGEK 120 (153)
Q Consensus 84 ~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~ 120 (153)
+..-+....++..+|++..|.|...++..+++.+.++
T Consensus 1413 ~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~pp 1449 (1592)
T KOG2301|consen 1413 EDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPP 1449 (1592)
T ss_pred cccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCc
Confidence 4445778889999999999999999999999987543
No 241
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=35.03 E-value=59 Score=15.64 Aligned_cols=38 Identities=21% Similarity=0.245 Sum_probs=24.9
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHH
Q 031791 108 NELHAVLKKLGEKSSLKDCVNMIKKVDADGDGHVNFEEFKKM 149 (153)
Q Consensus 108 ~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~ 149 (153)
+|....|..+| .+..++..++..... ...++.++.++.
T Consensus 4 ~d~~~AL~~LG--y~~~e~~~av~~~~~--~~~~~~e~~ik~ 41 (47)
T PF07499_consen 4 EDALEALISLG--YSKAEAQKAVSKLLE--KPGMDVEELIKQ 41 (47)
T ss_dssp HHHHHHHHHTT--S-HHHHHHHHHHHHH--STTS-HHHHHHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHhhc--CCCCCHHHHHHH
Confidence 56777788788 667788888887754 334566666554
No 242
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=34.89 E-value=92 Score=23.76 Aligned_cols=38 Identities=16% Similarity=0.129 Sum_probs=32.5
Q ss_pred CCChhhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHhC
Q 031791 9 ANYLGSMDEVRKVFNKFDKNGDGKISADELKDVLRSLG 46 (153)
Q Consensus 9 ~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~ 46 (153)
.|++.+.-.+..+|+.+|..+=-.|+..++..++..++
T Consensus 121 ~LNdtQ~gvL~i~F~~ADd~gLlLlDLkDLra~l~~v~ 158 (502)
T PF05872_consen 121 ELNDTQEGVLNIVFRIADDEGLLLLDLKDLRAMLQYVS 158 (502)
T ss_pred ccchHHHHHHHHHHHHhccCCCccccHHHHHHHHHHHH
Confidence 57788888999999999988777899999999988664
No 243
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=34.86 E-value=70 Score=16.44 Aligned_cols=39 Identities=13% Similarity=0.230 Sum_probs=29.2
Q ss_pred CCCCCCChhhHHHHHHHHHhhCCCCCCc----cCHHHHHHHHHHhCCC
Q 031791 5 NSNGANYLGSMDEVRKVFNKFDKNGDGK----ISADELKDVLRSLGSK 48 (153)
Q Consensus 5 ~~~~~~~~~~~~~l~~~f~~~d~~~~g~----l~~~e~~~~l~~~~~~ 48 (153)
+....+++++...|+..|... |+ .+..+...+...+|+.
T Consensus 3 R~RT~Ft~~Q~~~Le~~fe~~-----~y~~~~~~~~~r~~la~~lgl~ 45 (58)
T TIGR01565 3 RRRTKFTAEQKEKMRDFAEKL-----GWKLKDKRREEVREFCEEIGVT 45 (58)
T ss_pred CCCCCCCHHHHHHHHHHHHHc-----CCCCCCCCHHHHHHHHHHhCCC
Confidence 456789999999999988853 44 6777777777776654
No 244
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=34.45 E-value=70 Score=16.36 Aligned_cols=53 Identities=13% Similarity=0.384 Sum_probs=37.1
Q ss_pred CChhhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCceeH
Q 031791 10 NYLGSMDEVRKVFNKFDKNGDGKISADELKDVLRSLGSKTSPEEVKRVMDEIDTDGDGYIDF 71 (153)
Q Consensus 10 ~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~ 71 (153)
|++.....|+.+|.... ..+.+...++...|. .+..-+..++..+.. .|.|.+
T Consensus 2 Lt~~~e~YL~~Iy~l~~--~~~~v~~~~iA~~L~-----vs~~tvt~ml~~L~~--~GlV~~ 54 (60)
T PF01325_consen 2 LTESEEDYLKAIYELSE--EGGPVRTKDIAERLG-----VSPPTVTEMLKRLAE--KGLVEY 54 (60)
T ss_dssp CSCHHHHHHHHHHHHHH--CTSSBBHHHHHHHHT-----S-HHHHHHHHHHHHH--TTSEEE
T ss_pred CCcHHHHHHHHHHHHHc--CCCCccHHHHHHHHC-----CChHHHHHHHHHHHH--CCCEEe
Confidence 67888899999999875 677899999998763 455556666666543 344544
No 245
>PRK10945 gene expression modulator; Provisional
Probab=34.19 E-value=81 Score=17.02 Aligned_cols=44 Identities=9% Similarity=0.052 Sum_probs=21.8
Q ss_pred eeHHHHHHHHhcCCCCchHHHHHHHhhhhcCCCCCCccHHHHHHHHHHhCC
Q 031791 69 IDFKEFSTFHLAGGSTDGTKELKDAFDLYDMDQNGLISANELHAVLKKLGE 119 (153)
Q Consensus 69 i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~ 119 (153)
++-.+|+.-++.. +..+-+..+|... ...++..|+..+..+..+
T Consensus 6 Mtk~dyL~~fRrc---ss~eTLEkvie~~----~~~L~~~E~~~f~~AaDH 49 (72)
T PRK10945 6 LTKTDYLMRLRRC---QTIDTLERVIEKN----KYELSDDELAVFYSAADH 49 (72)
T ss_pred ccHHHHHHHHHhc---CcHHHHHHHHHHh----hccCCHHHHHHHHHHHHH
Confidence 3455555544432 2234455555433 234555666666665543
No 246
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=34.02 E-value=91 Score=17.51 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=17.7
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHH
Q 031791 105 ISANELHAVLKKLGEKSSLKDCVNMI 130 (153)
Q Consensus 105 i~~~e~~~~l~~~~~~~~~~~~~~~~ 130 (153)
|+.+++.++..-....++++++..+.
T Consensus 3 i~~e~i~~la~La~l~l~~ee~~~~~ 28 (95)
T PRK00034 3 ITREEVKHLAKLARLELSEEELEKFA 28 (95)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 67777777777777777776655443
No 247
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=33.79 E-value=8.5 Score=25.05 Aligned_cols=44 Identities=9% Similarity=0.215 Sum_probs=32.1
Q ss_pred HHHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHH
Q 031791 87 TKELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMI 130 (153)
Q Consensus 87 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 130 (153)
.+.++.+|.-||++.--..+.+++.+++..-+.--+..-|+.++
T Consensus 53 re~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Avi 96 (187)
T PRK10353 53 RENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAII 96 (187)
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHHH
Confidence 47788999999988877788899988888665444444444433
No 248
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=33.69 E-value=1.2e+02 Score=19.72 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=31.4
Q ss_pred CCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCceeHH
Q 031791 27 KNGDGKISADELKDVLRSLGSKTSPEEVKRVMDEIDTDGDGYIDFK 72 (153)
Q Consensus 27 ~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ 72 (153)
.+.+|.+..+++...++.-+...+.+++.++... |..++..+.
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~---d~K~Rf~l~ 70 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVES---DDKGRFEIS 70 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHc---CCCcceEec
Confidence 4778999999999988765666788888876554 444555554
No 249
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=33.46 E-value=1.5e+02 Score=19.75 Aligned_cols=44 Identities=16% Similarity=0.348 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcc
Q 031791 15 MDEVRKVFNKFDKNGDGKISADELKDVLRSLGSKTSPEEVKRVMDEIDT 63 (153)
Q Consensus 15 ~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~ 63 (153)
....++.+..+...+..+++..|+...+ ..+...+.+=|+.|..
T Consensus 15 L~~YyR~le~l~a~~v~rvsS~els~~~-----~vdsatIRrDfSYFG~ 58 (211)
T COG2344 15 LPLYYRVLERLHASGVERVSSKELSEAL-----GVDSATIRRDFSYFGE 58 (211)
T ss_pred hHHHHHHHHHHHHcCCceecHHHHHHHh-----CCCHHHHhhhhHHHHh
Confidence 3444666666667888899999999876 3556677665665543
No 250
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=33.45 E-value=73 Score=16.99 Aligned_cols=44 Identities=23% Similarity=0.260 Sum_probs=21.4
Q ss_pred HHHHhhhhcCCCCCCccHHHHHHHHHHh----CCCCCHHHHHHHHHhh
Q 031791 90 LKDAFDLYDMDQNGLISANELHAVLKKL----GEKSSLKDCVNMIKKV 133 (153)
Q Consensus 90 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~~~~~~ 133 (153)
+..+...++....--+-..+++..+..+ |...+++.+..+|..|
T Consensus 25 l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 25 LEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhh
Confidence 3444444443322234445555555553 5566677777777654
No 251
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=32.76 E-value=1.1e+02 Score=17.96 Aligned_cols=29 Identities=7% Similarity=0.248 Sum_probs=25.9
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 031791 105 ISANELHAVLKKLGEKSSLKDCVNMIKKV 133 (153)
Q Consensus 105 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 133 (153)
+|.+++.++|...|.......+..+++.+
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aL 45 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSAL 45 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHH
Confidence 99999999999999988888888888776
No 252
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=32.48 E-value=1.7e+02 Score=21.06 Aligned_cols=66 Identities=15% Similarity=0.159 Sum_probs=44.3
Q ss_pred HHHHHHH--HhCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhcCCCCchHHHHHHHhhhhcCCCCCCccHHHHHHHH
Q 031791 37 ELKDVLR--SLGSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLAGGSTDGTKELKDAFDLYDMDQNGLISANELHAVL 114 (153)
Q Consensus 37 e~~~~l~--~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l 114 (153)
.|...+. +.|......+...+++ .|.|+.+|=+..+.........+.+..+++.++ ||.+||..++
T Consensus 275 ~~~~y~~~~KfG~~~~~~~~s~~IR------~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 275 IFHDYLKYLKFGFGRATDHASIDIR------SGRITREEAIELVKEYDGEFPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred HHHHHHHHhhcCCCcCchHHHHHHH------cCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 3554443 4477666666655554 488999998888877544444577888888888 6777777654
No 253
>PRK10391 oriC-binding nucleoid-associated protein; Provisional
Probab=32.37 E-value=87 Score=16.81 Aligned_cols=10 Identities=30% Similarity=0.524 Sum_probs=4.2
Q ss_pred HHHHHHhhhh
Q 031791 88 KELKDAFDLY 97 (153)
Q Consensus 88 ~~~~~~f~~~ 97 (153)
+.+..+|...
T Consensus 17 eTLEkv~e~~ 26 (71)
T PRK10391 17 ESLEKLFDHL 26 (71)
T ss_pred HHHHHHHHHh
Confidence 3444444433
No 254
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=32.10 E-value=2e+02 Score=20.88 Aligned_cols=86 Identities=14% Similarity=0.094 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHhcc--CCCCceeHHHHHHHHhcCCCCchHHHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCH
Q 031791 46 GSKTSPEEVKRVMDEIDT--DGDGYIDFKEFSTFHLAGGSTDGTKELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSL 123 (153)
Q Consensus 46 ~~~~~~~~~~~l~~~~d~--~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~ 123 (153)
...+..++++.++..+.. |..-.+-=++|-..+...........+..+-+.+..+=+|++-+.|+.+-+..- .
T Consensus 35 d~s~~~~e~~A~l~Efr~DyNr~HF~R~~eF~~~~~~l~~~~r~~FidFLerSctaEFSGflLYKEl~rrlk~~-----n 109 (357)
T PLN02508 35 NKNLDMAEFEALLQEFKTDYNQTHFVRNEEFKAAADKIQGPLRQIFIEFLERSCTAEFSGFLLYKELGRRLKKT-----N 109 (357)
T ss_pred CCchhHHHHHHHHHHHHhCccccccccChhhccchhhCCHHHHHHHHHHHHhhhhhhcccchHHHHHHHhcccC-----C
Confidence 444556666666665533 232333344443333322222233344444555566667887777777655431 1
Q ss_pred HHHHHHHHhhcCC
Q 031791 124 KDCVNMIKKVDAD 136 (153)
Q Consensus 124 ~~~~~~~~~~d~~ 136 (153)
..+.++|..+..|
T Consensus 110 P~lae~F~lMaRD 122 (357)
T PLN02508 110 PVVAEIFTLMSRD 122 (357)
T ss_pred hHHHHHHHHhCch
Confidence 3445555554443
No 255
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=32.08 E-value=54 Score=14.34 Aligned_cols=11 Identities=27% Similarity=0.540 Sum_probs=4.6
Q ss_pred ccHHHHHHHHH
Q 031791 105 ISANELHAVLK 115 (153)
Q Consensus 105 i~~~e~~~~l~ 115 (153)
||.+|++.++.
T Consensus 17 ls~eeir~FL~ 27 (30)
T PF08671_consen 17 LSKEEIREFLE 27 (30)
T ss_dssp --HHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 45555555544
No 256
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=31.76 E-value=56 Score=14.46 Aligned_cols=17 Identities=35% Similarity=0.391 Sum_probs=11.9
Q ss_pred CccHHHHHHHHHHhCCC
Q 031791 104 LISANELHAVLKKLGEK 120 (153)
Q Consensus 104 ~i~~~e~~~~l~~~~~~ 120 (153)
.++..+++..++..|.+
T Consensus 3 ~l~~~~Lk~~l~~~gl~ 19 (35)
T smart00513 3 KLKVSELKDELKKRGLS 19 (35)
T ss_pred cCcHHHHHHHHHHcCCC
Confidence 46677777777777654
No 257
>PF13099 DUF3944: Domain of unknown function (DUF3944)
Probab=31.44 E-value=61 Score=14.78 Aligned_cols=16 Identities=38% Similarity=0.748 Sum_probs=8.6
Q ss_pred HHHHHHhhhhcCCCCC
Q 031791 88 KELKDAFDLYDMDQNG 103 (153)
Q Consensus 88 ~~~~~~f~~~d~~~~g 103 (153)
+.+..++..+-.+++|
T Consensus 16 edL~~L~~~Lt~dkdG 31 (35)
T PF13099_consen 16 EDLKDLVDILTHDKDG 31 (35)
T ss_pred HHHHHHHHHHhcCCCC
Confidence 4555555555544544
No 258
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=30.00 E-value=1.3e+02 Score=18.19 Aligned_cols=14 Identities=0% Similarity=0.294 Sum_probs=6.5
Q ss_pred CccHHHHHHHHHHh
Q 031791 104 LISANELHAVLKKL 117 (153)
Q Consensus 104 ~i~~~e~~~~l~~~ 117 (153)
.+|..++..++..+
T Consensus 67 ~LT~~Qi~Yl~~~~ 80 (122)
T PF06648_consen 67 KLTRSQIDYLYNRV 80 (122)
T ss_pred hcCHHHHHHHHHHH
Confidence 34444444444443
No 259
>PF02459 Adeno_terminal: Adenoviral DNA terminal protein; InterPro: IPR003391 The genome of adenovirus contains a protein covalently bound to the 5' end of each strand of the linear DNA molecule []. Since adenovirus DNA replication is initiated at the termini of the DNA molecule it has been proposed that the terminal protein serves as the primer for initiation of replication. However, the priming function now appears to reside in the precursor form of the terminal protein (pTP) found on the 5' ends of nascent DNA strands replicated in vitro [, ] and as a component of DNA-protein complexes isolated from virions of the protease-deficient adenovirus serotype 2 (Ad2) mutant tsl. The pTP is encoded by the leftward-transcribed strand of the viral genome and comprises part of a transcription unit that also encodes the single-strand DNA binding protein [].; GO: 0003677 DNA binding, 0006260 DNA replication
Probab=29.68 E-value=1.1e+02 Score=23.71 Aligned_cols=54 Identities=11% Similarity=0.282 Sum_probs=36.6
Q ss_pred CChhhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcc
Q 031791 10 NYLGSMDEVRKVFNKFDKNGDGKISADELKDVLRSLGSKTSPEEVKRVMDEIDT 63 (153)
Q Consensus 10 ~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~ 63 (153)
|+.-..+-+..+...++..+.|.++.+|...+|..+.+...+-+++.+++.+..
T Consensus 449 F~~l~~RI~~Dl~~~verag~~~~~~ee~e~~l~dI~y~~nSGDv~eIL~Q~~~ 502 (548)
T PF02459_consen 449 FSQLMRRISRDLLATVERAGRGELEEEEIEQFLADIAYRDNSGDVEEILRQAAL 502 (548)
T ss_pred HHHHHHHHHHHHHHHHhccCcccCCHHHHHHHHHHhcccccCCCHHHHHHHhhc
Confidence 333333444445555677788889999999988888777766677777776543
No 260
>PF05256 UPF0223: Uncharacterised protein family (UPF0223); InterPro: IPR007920 This family of proteins is functionally uncharacterised.; PDB: 2OY9_B.
Probab=28.81 E-value=76 Score=17.95 Aligned_cols=62 Identities=23% Similarity=0.320 Sum_probs=31.6
Q ss_pred CChhhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHh-CCCCCHHHHHHHHHHhccCCCCceeHH
Q 031791 10 NYLGSMDEVRKVFNKFDKNGDGKISADELKDVLRSL-GSKTSPEEVKRVMDEIDTDGDGYIDFK 72 (153)
Q Consensus 10 ~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~~~~~i~~~ 72 (153)
-|.+++-.+-..|......-.+.++.++|....+.. ...++..+=.+|++.|... .|.-.|.
T Consensus 11 WsteEii~Vi~F~~~VE~AYE~gV~r~~ll~~Y~~FK~VVpsK~EEKql~r~Fe~~-SGYs~Y~ 73 (88)
T PF05256_consen 11 WSTEEIIDVINFFNAVEKAYEKGVDREELLDAYRRFKKVVPSKSEEKQLDREFEEQ-SGYSIYR 73 (88)
T ss_dssp --HHHHHHHHHHHHHHHHHHTT-EEHHHHHHHHHHHHHH---HHHHHHHHHHHHCC-SS--HHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-hCCcHHH
Confidence 345566666666665544434457777777666555 3455666666677766543 2443333
No 261
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=28.79 E-value=2.8e+02 Score=21.47 Aligned_cols=59 Identities=25% Similarity=0.378 Sum_probs=39.3
Q ss_pred HHHhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHH---hc-----cCCCCceeHHHHHHHHh
Q 031791 21 VFNKFDKNGDGKISADELKDVLRSLGSKTSPEEVKRVMDE---ID-----TDGDGYIDFKEFSTFHL 79 (153)
Q Consensus 21 ~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~---~d-----~~~~~~i~~~ef~~~~~ 79 (153)
+|..+....++.++..-|..+|+..|+.-+..-+..++.. ++ ......++.+.|..+..
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~ 157 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIF 157 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhc
Confidence 4666654557899999999999999987554444443332 22 23346788888877654
No 262
>PHA02771 hypothetical protein; Provisional
Probab=28.42 E-value=1.2e+02 Score=17.21 Aligned_cols=8 Identities=13% Similarity=0.268 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 031791 123 LKDCVNMI 130 (153)
Q Consensus 123 ~~~~~~~~ 130 (153)
+++.+++.
T Consensus 34 e~ey~ELi 41 (90)
T PHA02771 34 YNQFEEII 41 (90)
T ss_pred HHHHHHHH
Confidence 33333333
No 263
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=28.34 E-value=22 Score=17.68 Aligned_cols=13 Identities=31% Similarity=0.465 Sum_probs=6.0
Q ss_pred CCccCHHHHHHHH
Q 031791 30 DGKISADELKDVL 42 (153)
Q Consensus 30 ~g~l~~~e~~~~l 42 (153)
++.+|..|+...+
T Consensus 20 ~~~ls~~eia~~l 32 (51)
T PF08100_consen 20 GGPLSLSEIAARL 32 (51)
T ss_dssp TS-BEHHHHHHTS
T ss_pred CCCCCHHHHHHHc
Confidence 3455555555443
No 264
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=28.29 E-value=1.2e+02 Score=17.32 Aligned_cols=27 Identities=15% Similarity=0.078 Sum_probs=18.3
Q ss_pred CccHHHHHHHHHHhCCCCCHHHHHHHH
Q 031791 104 LISANELHAVLKKLGEKSSLKDCVNMI 130 (153)
Q Consensus 104 ~i~~~e~~~~l~~~~~~~~~~~~~~~~ 130 (153)
.|+.+++.++.+-....+++++++.+.
T Consensus 2 ~i~~e~v~~la~LarL~lseee~e~~~ 28 (96)
T COG0721 2 AIDREEVKHLAKLARLELSEEELEKFA 28 (96)
T ss_pred ccCHHHHHHHHHHhhcccCHHHHHHHH
Confidence 467777877777766777776655433
No 265
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=28.00 E-value=78 Score=17.51 Aligned_cols=30 Identities=20% Similarity=0.154 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHhhcCCCCCcccHHHHHHH
Q 031791 120 KSSLKDCVNMIKKVDADGDGHVNFEEFKKM 149 (153)
Q Consensus 120 ~~~~~~~~~~~~~~d~~~~g~is~~ef~~~ 149 (153)
...++..+.+-+.++......|+++|++.+
T Consensus 45 ~IP~~V~~sl~kL~~La~~N~v~feeLc~Y 74 (82)
T PF11020_consen 45 QIPEKVMDSLSKLYKLAKENNVSFEELCVY 74 (82)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 344444444545555555556777777654
No 266
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=27.86 E-value=1.3e+02 Score=17.72 Aligned_cols=11 Identities=18% Similarity=0.806 Sum_probs=5.4
Q ss_pred ccHHHHHHHhh
Q 031791 141 VNFEEFKKMMT 151 (153)
Q Consensus 141 is~~ef~~~l~ 151 (153)
+||++|...++
T Consensus 99 ~s~~~~r~~ir 109 (118)
T PF09312_consen 99 ISYEEYREQIR 109 (118)
T ss_dssp --HHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 56666666554
No 267
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=27.61 E-value=3e+02 Score=21.49 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=17.7
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHH
Q 031791 106 SANELHAVLKKLGEKSSLKDCVNMI 130 (153)
Q Consensus 106 ~~~e~~~~l~~~~~~~~~~~~~~~~ 130 (153)
.+.=|.+++..++..+++.++.+-+
T Consensus 612 PysMF~kLl~~W~~klsp~qvaEKV 636 (706)
T KOG2303|consen 612 PYSMFCKLLHQWGDKLSPRQVAEKV 636 (706)
T ss_pred cHHHHHHHHHHhcCcCCHHHHHHHH
Confidence 4455788888888888887766533
No 268
>COG4476 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.53 E-value=1.2e+02 Score=16.98 Aligned_cols=54 Identities=19% Similarity=0.211 Sum_probs=33.5
Q ss_pred ChhhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHh-CCCCCHHHHHHHHHHhccC
Q 031791 11 YLGSMDEVRKVFNKFDKNGDGKISADELKDVLRSL-GSKTSPEEVKRVMDEIDTD 64 (153)
Q Consensus 11 ~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~ 64 (153)
|.++.-.+-..|+.....-.+.++..+|....+.. ...++..+-.+|++.+...
T Consensus 12 sTEE~~~Vl~Ffn~VE~aYE~gv~~~~ll~~Yr~FK~IVPsK~eEKql~r~FE~~ 66 (90)
T COG4476 12 STEEMISVLHFFNAVELAYEKGVDAEDLLGSYRRFKEIVPSKAEEKQLGRDFEKS 66 (90)
T ss_pred cHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcCchHHHHHHhHHHHHh
Confidence 44555555566666655555567777777766655 3456666677777777543
No 269
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=27.39 E-value=71 Score=14.23 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=11.3
Q ss_pred CccHHHHHHHHHHhCCC
Q 031791 104 LISANELHAVLKKLGEK 120 (153)
Q Consensus 104 ~i~~~e~~~~l~~~~~~ 120 (153)
.++..|++..++..|.+
T Consensus 3 ~l~v~eLk~~l~~~gL~ 19 (35)
T PF02037_consen 3 KLTVAELKEELKERGLS 19 (35)
T ss_dssp TSHHHHHHHHHHHTTS-
T ss_pred cCcHHHHHHHHHHCCCC
Confidence 35677777777777644
No 270
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=27.30 E-value=1e+02 Score=15.94 Aligned_cols=25 Identities=16% Similarity=0.084 Sum_probs=20.2
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHH
Q 031791 105 ISANELHAVLKKLGEKSSLKDCVNM 129 (153)
Q Consensus 105 i~~~e~~~~l~~~~~~~~~~~~~~~ 129 (153)
.+.+++..+.+..|..++..++...
T Consensus 25 ~~~e~~~~lA~~~Gf~ft~~el~~~ 49 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEFTGEDLKEA 49 (64)
T ss_pred CCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4578888888889999998887764
No 271
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=27.16 E-value=1.2e+02 Score=16.74 Aligned_cols=45 Identities=13% Similarity=0.285 Sum_probs=22.7
Q ss_pred ccHHHHHHHHHHhCCCCCHHHH--------------HHHHHhhcCCCCC-cccHHHHHHHhh
Q 031791 105 ISANELHAVLKKLGEKSSLKDC--------------VNMIKKVDADGDG-HVNFEEFKKMMT 151 (153)
Q Consensus 105 i~~~e~~~~l~~~~~~~~~~~~--------------~~~~~~~d~~~~g-~is~~ef~~~l~ 151 (153)
++..+.+.+.+.+| +++.+| -+++..|-..... .-+++.+++.|+
T Consensus 9 v~~~~wk~~~R~LG--lse~~Id~ie~~~~~~~Eq~yqmL~~W~~~~g~~~At~~~L~~aLr 68 (80)
T cd08313 9 VPPRRWKEFVRRLG--LSDNEIERVELDHRRCRDAQYQMLKVWKERGPRPYATLQHLLSVLR 68 (80)
T ss_pred CCHHHHHHHHHHcC--CCHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCCcchHHHHHHHHH
Confidence 45555666666655 444343 3455555322222 456666666554
No 272
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=27.10 E-value=81 Score=22.76 Aligned_cols=90 Identities=18% Similarity=0.245 Sum_probs=49.7
Q ss_pred hhhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhcCCCCchHHHHH
Q 031791 12 LGSMDEVRKVFNKFDKNGDGKISADELKDVLRSLGSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLAGGSTDGTKELK 91 (153)
Q Consensus 12 ~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~ 91 (153)
..+++.+..-|+ .|.+....+-.++|.+.+..+.......-++.|-+.+...=+|.+-|.|...-+... ...+.
T Consensus 44 ~~e~~A~l~E~r-~DyNr~HF~R~~ef~~~~d~l~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~~-----nP~la 117 (355)
T PRK13654 44 REELDAILEEMR-ADYNRHHFVRDEEFDQDWDHLDPETRKEFIDFLERSCTAEFSGFLLYKELSRRLKDR-----NPLLA 117 (355)
T ss_pred HHHHHHHHHHHH-hCcccccccCChhhhhchhhCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhcccc-----CcHHH
Confidence 445555555555 466666677777777654443323223344555555554556777777765544321 14566
Q ss_pred HHhhhhcCC---CCCCccH
Q 031791 92 DAFDLYDMD---QNGLISA 107 (153)
Q Consensus 92 ~~f~~~d~~---~~g~i~~ 107 (153)
.+|.....| +.|.|..
T Consensus 118 e~F~lMaRDEARHAGFlNk 136 (355)
T PRK13654 118 ELFQLMARDEARHAGFLNK 136 (355)
T ss_pred HHHHHHhhhHHHHhhhHHH
Confidence 777777655 3455543
No 273
>cd07177 terB_like tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Probab=26.87 E-value=1.2e+02 Score=16.72 Aligned_cols=16 Identities=25% Similarity=0.576 Sum_probs=11.1
Q ss_pred CCccCHHHHHHHHHHh
Q 031791 30 DGKISADELKDVLRSL 45 (153)
Q Consensus 30 ~g~l~~~e~~~~l~~~ 45 (153)
||.++..|...+...+
T Consensus 13 DG~i~~~E~~~i~~~~ 28 (104)
T cd07177 13 DGRVDEEEIAAIEALL 28 (104)
T ss_pred cCCCCHHHHHHHHHHH
Confidence 6778888777665544
No 274
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=26.13 E-value=94 Score=15.20 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=32.3
Q ss_pred CCCCCChhhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHH
Q 031791 6 SNGANYLGSMDEVRKVFNKFDKNGDGKISADELKDVLRSLGSKTSPEEVKRVM 58 (153)
Q Consensus 6 ~~~~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~ 58 (153)
....+++.+...|...|.. +...+..+...+...+|+. ...+..-|
T Consensus 3 ~r~~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~l~l~--~~~V~~WF 48 (57)
T PF00046_consen 3 KRTRFTKEQLKVLEEYFQE-----NPYPSKEEREELAKELGLT--ERQVKNWF 48 (57)
T ss_dssp SSSSSSHHHHHHHHHHHHH-----SSSCHHHHHHHHHHHHTSS--HHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH-----hcccccccccccccccccc--ccccccCH
Confidence 4567889999999999984 5567778877777776554 44444433
No 275
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=25.97 E-value=1.1e+02 Score=15.87 Aligned_cols=30 Identities=17% Similarity=0.268 Sum_probs=20.4
Q ss_pred HHHhhhhcCCCCCCccHHHHHHHHHHhCCC
Q 031791 91 KDAFDLYDMDQNGLISANELHAVLKKLGEK 120 (153)
Q Consensus 91 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~ 120 (153)
..+++.++.+....++.+|...-....|.+
T Consensus 7 ~~v~~~l~t~~~~GLs~~ev~~r~~~~G~N 36 (69)
T PF00690_consen 7 EEVLKRLNTSSSQGLSSEEVEERRKKYGPN 36 (69)
T ss_dssp HHHHHHHTTBTSSBBTHHHHHHHHHHHSSS
T ss_pred HHHHHHHCcCCCCCCCHHHHHHHHHhcccc
Confidence 445666665666667778888877777754
No 276
>PF13373 DUF2407_C: DUF2407 C-terminal domain
Probab=25.59 E-value=72 Score=19.77 Aligned_cols=20 Identities=10% Similarity=0.197 Sum_probs=16.9
Q ss_pred CCCCChhhHHHHHHHHHhhC
Q 031791 7 NGANYLGSMDEVRKVFNKFD 26 (153)
Q Consensus 7 ~~~~~~~~~~~l~~~f~~~d 26 (153)
...+|++++..++..|+..=
T Consensus 8 ~~GFS~~eI~~LR~QF~~~~ 27 (140)
T PF13373_consen 8 SAGFSPEEIQDLRSQFHSIY 27 (140)
T ss_pred HcCCCHHHHHHHHHHHHHHh
Confidence 35799999999999998763
No 277
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=25.41 E-value=1e+02 Score=25.11 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=41.3
Q ss_pred HHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCC
Q 031791 88 KELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKVDADG 137 (153)
Q Consensus 88 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~ 137 (153)
..+..++..||+..+|.|..-+|+-.+-.+.....++....+|+.....+
T Consensus 470 ~~lN~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~ 519 (966)
T KOG4286|consen 470 MCLNWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASST 519 (966)
T ss_pred HHHHHHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCch
Confidence 34678899999999999999999988888877677778889998885443
No 278
>cd07357 HN_L-whirlin_R2_like Second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains. This subgroup contains the second of two harmonin_N_like domains found in the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. The short whirlin isoform, derived from an alternative start ATG, lacks the first harmonin_N_like domain but has in common with the long isoform, this second harmonin_N_like domain (designated repeat 2, included in this subgroup) and PDZ3. This second harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=25.37 E-value=95 Score=17.20 Aligned_cols=30 Identities=13% Similarity=0.220 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHh
Q 031791 121 SSLKDCVNMIKKVDADGDGHVNFEEFKKMM 150 (153)
Q Consensus 121 ~~~~~~~~~~~~~d~~~~g~is~~ef~~~l 150 (153)
+++.+...+--.++.-..|.|+.+.|+..+
T Consensus 16 L~e~E~~tm~yyl~eY~~~~~tVealV~aL 45 (81)
T cd07357 16 LSENERATLSYYLDEYRSGHISVDALVMAL 45 (81)
T ss_pred cCHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 344555555555554555556655555443
No 279
>PF05321 HHA: Haemolysin expression modulating protein; InterPro: IPR007985 This family consists of haemolysin expression modulating protein (Hha) from Escherichia coli and its enterobacterial homologues, such as YmoA from Yersinia enterocolitica, and RmoA encoded on the R100 plasmid. These proteins act as modulators of bacterial gene expression. Members of the Hha/YmoA/RmoA family act in conjunction with members of the H-NS family, participating in the thermoregulation of different virulence factors and in plasmid transfer []. Hha, along with the chromatin-associated protein H-NS, is involved in the regulation of expression of the toxin alpha-haemolysin in response to osmolarity and temperature []. YmoA modulates the expression of various virulence factors, such as Yop proteins and YadA adhesin, in response to temperature. RmoA is a plasmid R100 modulator involved in plasmid transfer []. The HHA family of proteins display striking similarity to the oligomerization domain of the H-NS proteins.; PDB: 1JW2_A 2K5S_A 2JQT_A.
Probab=25.33 E-value=81 Score=16.19 Aligned_cols=27 Identities=11% Similarity=0.038 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 031791 107 ANELHAVLKKLGEKSSLKDCVNMIKKV 133 (153)
Q Consensus 107 ~~e~~~~l~~~~~~~~~~~~~~~~~~~ 133 (153)
.+.+.+++......++..++..+....
T Consensus 9 ~dtLEkv~e~~~~~L~~~e~~~f~~Aa 35 (57)
T PF05321_consen 9 LDTLEKVIEHNRYKLTDDELEAFNSAA 35 (57)
T ss_dssp HHHHHHHHHHHHHHS-HHHHHHHHHHH
T ss_pred HhhHHHHHHHhhCcCCHHHHHHHHHHH
Confidence 344444444444445555555554444
No 280
>PF13075 DUF3939: Protein of unknown function (DUF3939)
Probab=25.22 E-value=16 Score=22.42 Aligned_cols=13 Identities=15% Similarity=0.153 Sum_probs=5.4
Q ss_pred CCCCccHHHHHHH
Q 031791 101 QNGLISANELHAV 113 (153)
Q Consensus 101 ~~g~i~~~e~~~~ 113 (153)
.++.|+.+-+...
T Consensus 38 ~d~~iD~~~L~~y 50 (140)
T PF13075_consen 38 DDQSIDFERLAPY 50 (140)
T ss_pred CCceecHHHHhhh
Confidence 3344444444433
No 281
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=25.21 E-value=1.6e+02 Score=17.40 Aligned_cols=31 Identities=16% Similarity=0.280 Sum_probs=26.6
Q ss_pred CccHHHHHHHHHHhCCCCCHHHHHHHHHhhc
Q 031791 104 LISANELHAVLKKLGEKSSLKDCVNMIKKVD 134 (153)
Q Consensus 104 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 134 (153)
.||.+++..++...|....+..+..+++.+.
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL~ 46 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAALE 46 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 7999999999999998888888887777763
No 282
>PF14473 RD3: RD3 protein
Probab=25.15 E-value=1.8e+02 Score=17.99 Aligned_cols=54 Identities=13% Similarity=0.193 Sum_probs=37.0
Q ss_pred CCCCCCChhhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 031791 5 NSNGANYLGSMDEVRKVFNKFDKNGDGKISADELKDVLRSLGSKTSPEEVKRVMDEI 61 (153)
Q Consensus 5 ~~~~~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 61 (153)
+....+++.+...|..+...+-+...|.+ ..-|..++. .+.+...++-.+|+.+
T Consensus 67 r~~~~i~~~ErlqLE~lCski~P~~~g~v-I~RFRella--e~e~~~~Ev~~iFr~v 120 (133)
T PF14473_consen 67 RPSYQISPGERLQLEDLCSKIPPCECGPV-ISRFRELLA--ENEPEVWEVPRIFRSV 120 (133)
T ss_pred CccCCCCHHHHHHHHHHHhcCChhhhHHH-HHHHHHHHH--ccCCCHHHHHHHHHHH
Confidence 67788999999999999998877766632 123333332 3466677787777654
No 283
>PF06569 DUF1128: Protein of unknown function (DUF1128); InterPro: IPR009507 This family consists of several short, hypothetical bacterial proteins of unknown function.
Probab=24.99 E-value=1.3e+02 Score=16.31 Aligned_cols=8 Identities=13% Similarity=0.683 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 031791 15 MDEVRKVF 22 (153)
Q Consensus 15 ~~~l~~~f 22 (153)
+..|+...
T Consensus 13 Ie~Ik~KL 20 (71)
T PF06569_consen 13 IEEIKQKL 20 (71)
T ss_pred HHHHHHHH
Confidence 33344333
No 284
>PF03874 RNA_pol_Rpb4: RNA polymerase Rpb4; InterPro: IPR005574 The eukaryotic RNA polymerase subunits RPB4 and RPB7 form a heterodimer that reversibly associates with the RNA polymerase II core. Archaeal cells contain a single RNAP made up of about 12 subunits, displaying considerable homology to the eukaryotic RNAPII subunits. The RPB4 and RPB7 homologs are called subunits F and E, respectively, and have been shown to form a stable heterodimer. While the RPB7 homologue is reasonably well conserved, the similarity between the eukaryotic RPB4 and the archaeal F subunit is barely detectable [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3AYH_A 3H3V_E 4A3C_D 3PO3_D 3HOX_D 2R92_D 3HOU_D 1Y77_D 2R7Z_D 3QT1_D ....
Probab=24.92 E-value=98 Score=18.10 Aligned_cols=11 Identities=9% Similarity=0.371 Sum_probs=4.4
Q ss_pred ccHHHHHHHHH
Q 031791 105 ISANELHAVLK 115 (153)
Q Consensus 105 i~~~e~~~~l~ 115 (153)
++..|..+++.
T Consensus 71 L~~~E~~qi~N 81 (117)
T PF03874_consen 71 LTEFEILQIIN 81 (117)
T ss_dssp S-HHHHHHHHH
T ss_pred CCHHHHHHHhc
Confidence 44444444444
No 285
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=24.91 E-value=1.9e+02 Score=18.23 Aligned_cols=112 Identities=13% Similarity=0.209 Sum_probs=61.0
Q ss_pred CCChhhHHHHHHHHHhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhcCCCCch--
Q 031791 9 ANYLGSMDEVRKVFNKFDKNGDGKISADELKDVLRSLGSKTSPEEVKRVMDEIDTDGDGYIDFKEFSTFHLAGGSTDG-- 86 (153)
Q Consensus 9 ~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~-- 86 (153)
.+++.....++.++.... .+|.+...++...|. .+...+..+++.+.. .|.|.|..+..+.........
T Consensus 3 ~~s~~~edYL~~Iy~l~~--~~~~~~~~diA~~L~-----Vsp~sVt~ml~rL~~--~GlV~~~~y~gi~LT~~G~~~a~ 73 (154)
T COG1321 3 MLSETEEDYLETIYELLE--EKGFARTKDIAERLK-----VSPPSVTEMLKRLER--LGLVEYEPYGGVTLTEKGREKAK 73 (154)
T ss_pred ccchHHHHHHHHHHHHHh--ccCcccHHHHHHHhC-----CCcHHHHHHHHHHHH--CCCeEEecCCCeEEChhhHHHHH
Confidence 467888889999998764 688899999998764 233334444444432 355555443222111000000
Q ss_pred -----HHHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhc
Q 031791 87 -----TKELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKVD 134 (153)
Q Consensus 87 -----~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 134 (153)
-..+...+. +.- .++.++...--..+.+.+++..+..+...++
T Consensus 74 ~~~r~hrlle~fL~----~~l-g~~~~~~~~ea~~leh~~s~~~~~rl~~~l~ 121 (154)
T COG1321 74 ELLRKHRLLERFLV----DVL-GLDWEEAHEEAEGLEHALSDETAERLDELLG 121 (154)
T ss_pred HHHHHHHHHHHHHH----HHh-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhC
Confidence 011122222 111 2555666655556666778777777777664
No 286
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=24.88 E-value=2.1e+02 Score=18.87 Aligned_cols=44 Identities=5% Similarity=0.101 Sum_probs=27.7
Q ss_pred HHHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 031791 87 TKELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKV 133 (153)
Q Consensus 87 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 133 (153)
.+....+-..|.+|+.|.|+...+..+.+. ...++...+.+..+
T Consensus 118 ~~l~~lV~~af~~dk~G~l~~~rIl~Lrrl---~i~D~~w~~am~aI 161 (195)
T PF11363_consen 118 PELRALVNRAFQVDKEGNLNTSRILGLRRL---EIDDERWQEAMDAI 161 (195)
T ss_pred hHHHHHHHHHHhcCCCCCcCHHHHHHHHhc---cCCCHHHHHHHHHH
Confidence 344555667777888898988887766664 23344555544443
No 287
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=24.77 E-value=1.6e+02 Score=18.52 Aligned_cols=27 Identities=15% Similarity=0.353 Sum_probs=12.8
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHH
Q 031791 16 DEVRKVFNKFDKNGDGKISADELKDVL 42 (153)
Q Consensus 16 ~~l~~~f~~~d~~~~g~l~~~e~~~~l 42 (153)
+.+.......|..+.++||..++..++
T Consensus 69 q~L~~rL~~le~~rg~Y~TiSeLKT~v 95 (148)
T PF12486_consen 69 QQLADRLNQLEEQRGKYMTISELKTAV 95 (148)
T ss_pred HHHHHHHHHHHHhcCCceeHHHHHHHH
Confidence 334444444444444455555555443
No 288
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=24.53 E-value=1.3e+02 Score=16.59 Aligned_cols=22 Identities=45% Similarity=0.564 Sum_probs=13.3
Q ss_pred HHHHHHHHhCCCCCHHHHHHHH
Q 031791 37 ELKDVLRSLGSKTSPEEVKRVM 58 (153)
Q Consensus 37 e~~~~l~~~~~~~~~~~~~~l~ 58 (153)
|+..+|+.+|..+++++...+-
T Consensus 21 EIL~ALrkLge~Ls~eE~~FL~ 42 (78)
T PF06384_consen 21 EILTALRKLGEKLSPEEEAFLE 42 (78)
T ss_dssp HHHHHHHHTT----HHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHH
Confidence 5667888899988888876654
No 289
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=24.16 E-value=79 Score=13.68 Aligned_cols=14 Identities=29% Similarity=0.442 Sum_probs=10.3
Q ss_pred CCccCHHHHHHHHH
Q 031791 30 DGKISADELKDVLR 43 (153)
Q Consensus 30 ~g~l~~~e~~~~l~ 43 (153)
.|.||.+||...-.
T Consensus 14 ~G~IseeEy~~~k~ 27 (31)
T PF09851_consen 14 KGEISEEEYEQKKA 27 (31)
T ss_pred cCCCCHHHHHHHHH
Confidence 68888888876543
No 290
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=23.74 E-value=1.4e+02 Score=16.92 Aligned_cols=13 Identities=15% Similarity=0.460 Sum_probs=6.6
Q ss_pred CCCCCcccHHHHH
Q 031791 135 ADGDGHVNFEEFK 147 (153)
Q Consensus 135 ~~~~g~is~~ef~ 147 (153)
..+.+.|+...|.
T Consensus 68 ~~~~~~Ip~~~~~ 80 (90)
T PF02337_consen 68 EQGPEKIPIQAFP 80 (90)
T ss_dssp HCSTTTS-CHHHH
T ss_pred HhCCCCCChhHHH
Confidence 3456666665553
No 291
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=23.63 E-value=1.4e+02 Score=16.69 Aligned_cols=25 Identities=4% Similarity=-0.066 Sum_probs=16.0
Q ss_pred CCCCCChhhHHHHHHHHHhhCCCCCC
Q 031791 6 SNGANYLGSMDEVRKVFNKFDKNGDG 31 (153)
Q Consensus 6 ~~~~~~~~~~~~l~~~f~~~d~~~~g 31 (153)
....|+++|++.+++.+..- +.++|
T Consensus 48 F~D~lTpDQVrAlHRlvTsS-pe~d~ 72 (92)
T PHA02681 48 FEDKMTDDQVRAFHALVTSS-PEDDP 72 (92)
T ss_pred hhccCCHHHHHHHHHHHhCC-CCCCC
Confidence 34567788888888877643 44443
No 292
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=23.53 E-value=2.1e+02 Score=23.27 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=37.4
Q ss_pred HHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHhh
Q 031791 89 ELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKVDADGDGHVNFEEFKKMMT 151 (153)
Q Consensus 89 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 151 (153)
....+|+..-+++.-.+..+++..+ ..+++++..+..++...++.|+++.|.+.+.
T Consensus 405 aA~~iF~nv~~p~~~~i~ld~~~~f-------~~~E~a~~~~slfe~~~~~~Itrs~~~~~iv 460 (714)
T KOG4629|consen 405 AARKIFKNVAKPGVILIDLDDLLRF-------MGDEEAERAFSLFEGASDENITRSSFKEWIV 460 (714)
T ss_pred HHHHHHhccCCCCccchhhhhhhhc-------CCHHHHHHHHHhhhhhcccCccHHHHHHHHH
Confidence 4556677776666556655554433 3467788888888776666699888887654
No 293
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=23.28 E-value=96 Score=24.76 Aligned_cols=63 Identities=19% Similarity=0.332 Sum_probs=40.4
Q ss_pred HHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCH---------HHHHHHHHhhcCCCC---------------------
Q 031791 89 ELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSL---------KDCVNMIKKVDADGD--------------------- 138 (153)
Q Consensus 89 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~---------~~~~~~~~~~d~~~~--------------------- 138 (153)
....++..+|.+.++.++..++.....+++..+.. .+...++..+|.+++
T Consensus 438 ~~~~~~s~~d~~~~fk~sf~~~~~l~~~F~~vvaa~~~~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~vS~~~~~~ 517 (975)
T KOG2419|consen 438 FAKRILSIVDYEEDFKLSFSEFSDLSFAFGNVVAANKLAWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYVSYPFLKK 517 (975)
T ss_pred hhhhcccccccccCceEeeehHHHHHHHHHHHHHhhhcchhhhcccchhheehhhccCCcccCccccchhhhcccccccc
Confidence 34556777788888888877777766665432111 123445666666666
Q ss_pred --CcccHHHHHHHhh
Q 031791 139 --GHVNFEEFKKMMT 151 (153)
Q Consensus 139 --g~is~~ef~~~l~ 151 (153)
|.++.++.+.+++
T Consensus 518 s~~~vtVDe~v~ll~ 532 (975)
T KOG2419|consen 518 SFGVVTVDELVALLA 532 (975)
T ss_pred ccCeeEHHHHHHHHH
Confidence 7888888877665
No 294
>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end. To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton
Probab=22.98 E-value=89 Score=19.56 Aligned_cols=22 Identities=9% Similarity=0.228 Sum_probs=16.1
Q ss_pred CCCChhhHHHHHHHHHhhCCCC
Q 031791 8 GANYLGSMDEVRKVFNKFDKNG 29 (153)
Q Consensus 8 ~~~~~~~~~~l~~~f~~~d~~~ 29 (153)
+.||+++++.|..-...+|+++
T Consensus 22 ~~LS~EEL~~L~~el~e~DPd~ 43 (147)
T PF03250_consen 22 AKLSPEELEELENELEEMDPDN 43 (147)
T ss_pred HhCCHHHHHHHHHHHHhhCCCc
Confidence 4678888888877777777654
No 295
>PF04361 DUF494: Protein of unknown function (DUF494); InterPro: IPR007456 Members of this family of uncharacterised proteins are often named Smg.
Probab=22.97 E-value=2.1e+02 Score=18.10 Aligned_cols=42 Identities=17% Similarity=0.227 Sum_probs=29.5
Q ss_pred HHHHHhhhh-cCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 031791 89 ELKDAFDLY-DMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKK 132 (153)
Q Consensus 89 ~~~~~f~~~-d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 132 (153)
-+..+|..| +.+.+-+.+.+++..-|...| ..+.+|..++.-
T Consensus 4 VL~yLfE~y~~~~~~~~~d~~~L~~~L~~aG--F~~~eI~~Al~W 46 (155)
T PF04361_consen 4 VLMYLFENYIDFESDACPDQDDLTRELSAAG--FEDEEINKALDW 46 (155)
T ss_pred HHHHHHHHHcCCccccCCCHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence 345566665 444567788999999999888 557777766543
No 296
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.72 E-value=1.9e+02 Score=17.59 Aligned_cols=38 Identities=16% Similarity=0.242 Sum_probs=19.5
Q ss_pred CceeHHHHHHHHhcCCCCchHH----HHHHHhhhhcCCCCCCc
Q 031791 67 GYIDFKEFSTFHLAGGSTDGTK----ELKDAFDLYDMDQNGLI 105 (153)
Q Consensus 67 ~~i~~~ef~~~~~~~~~~~~~~----~~~~~f~~~d~~~~g~i 105 (153)
|.|++.|=..++.... +...+ ....+|+.-|+...|..
T Consensus 54 ~~iTlqEa~qILnV~~-~ln~eei~k~yehLFevNdkskGGSF 95 (132)
T KOG3442|consen 54 GKITLQEAQQILNVKE-PLNREEIEKRYEHLFEVNDKSKGGSF 95 (132)
T ss_pred ccccHHHHhhHhCCCC-CCCHHHHHHHHHHHHhccCcccCcce
Confidence 5577777666655422 22222 34445555566555544
No 297
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=22.18 E-value=1.3e+02 Score=16.74 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=12.7
Q ss_pred HHhhhhcCCCCCCccHHHHHHHHH
Q 031791 92 DAFDLYDMDQNGLISANELHAVLK 115 (153)
Q Consensus 92 ~~f~~~d~~~~g~i~~~e~~~~l~ 115 (153)
.+....+.+.+|.|+.+-+..+=+
T Consensus 27 fL~~~~~~~~dG~Vpl~~i~~F~r 50 (82)
T cd08032 27 FLREQIEKSRDGYIDISLLVSFNK 50 (82)
T ss_pred HHHHHhcCCCCCCEeHHHHhcchH
Confidence 334445555666666655544433
No 298
>PF13551 HTH_29: Winged helix-turn helix
Probab=22.11 E-value=1.6e+02 Score=16.55 Aligned_cols=51 Identities=16% Similarity=0.334 Sum_probs=30.0
Q ss_pred CChhhHHHHHHHHHhhCCCCCCccCHHHHHHHH--HHhCCCCCHHHHHHHHHH
Q 031791 10 NYLGSMDEVRKVFNKFDKNGDGKISADELKDVL--RSLGSKTSPEEVKRVMDE 60 (153)
Q Consensus 10 ~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l--~~~~~~~~~~~~~~l~~~ 60 (153)
+++++...+...+...-..+.+..+...+...+ ...+..++..-+..++..
T Consensus 58 l~~~~~~~l~~~~~~~p~~g~~~~t~~~l~~~l~~~~~~~~~s~~ti~r~L~~ 110 (112)
T PF13551_consen 58 LSEEQRAQLIELLRENPPEGRSRWTLEELAEWLIEEEFGIDVSPSTIRRILKR 110 (112)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCcccHHHHHHHHHHhccCccCCHHHHHHHHHH
Confidence 677777777766664433322356777777643 233566666666665543
No 299
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=22.02 E-value=1.7e+02 Score=16.84 Aligned_cols=65 Identities=5% Similarity=0.052 Sum_probs=40.9
Q ss_pred eeHHHHHHHHhcCCCCchHHHHHHHhhhhcCCCCCCccHHHHHHHHHHhC-CCCCHHHHHHHHHhh
Q 031791 69 IDFKEFSTFHLAGGSTDGTKELKDAFDLYDMDQNGLISANELHAVLKKLG-EKSSLKDCVNMIKKV 133 (153)
Q Consensus 69 i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~ 133 (153)
|.-.+|.-.+..+...-..+++..+-..+-.++....+..++...+..+- ...+++++...-..+
T Consensus 20 vP~~Dy~PLlALL~r~Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~vt~~~P~~~di~RV~~~L 85 (96)
T PF11829_consen 20 VPPTDYVPLLALLRRRLTDDEVAEVAAELAARGDPPVDRIDIGVAITRVTDELPTPEDIERVRARL 85 (96)
T ss_dssp B-HHHHHHHHHHHTTTS-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHHCSS-S-HHHHHHHHHHH
T ss_pred CCCCccHHHHHHhcccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCcCHHHHHHHHHHH
Confidence 77778877777655556667777777777666666667778877777654 445667776655444
No 300
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=21.98 E-value=99 Score=14.00 Aligned_cols=14 Identities=36% Similarity=0.427 Sum_probs=6.8
Q ss_pred cHHHHHHHHHHhCC
Q 031791 106 SANELHAVLKKLGE 119 (153)
Q Consensus 106 ~~~e~~~~l~~~~~ 119 (153)
+-++++..|...|.
T Consensus 5 s~~~L~~wL~~~gi 18 (38)
T PF10281_consen 5 SDSDLKSWLKSHGI 18 (38)
T ss_pred CHHHHHHHHHHcCC
Confidence 33455555555443
No 301
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=21.96 E-value=1.9e+02 Score=17.30 Aligned_cols=32 Identities=13% Similarity=0.288 Sum_probs=19.0
Q ss_pred CCCccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 031791 102 NGLISANELHAVLKKLGEKSSLKDCVNMIKKV 133 (153)
Q Consensus 102 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 133 (153)
.|.++.+++..-+..-+..++..++..++..+
T Consensus 26 ~~~~tl~~Ia~~i~~~~s~~t~~di~~vl~~~ 57 (124)
T PF14848_consen 26 SGTLTLEDIAEEIAKEGSTLTRADIEAVLNAL 57 (124)
T ss_pred cCccCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 46666677666565555566666655555443
No 302
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=21.82 E-value=2.6e+02 Score=18.86 Aligned_cols=58 Identities=10% Similarity=0.140 Sum_probs=36.4
Q ss_pred CCCCCChhhHHHHHHHHHhhCCC-CCCccCHHHHHHH-HHHhCCCCCHHHHHHHHHHhcc
Q 031791 6 SNGANYLGSMDEVRKVFNKFDKN-GDGKISADELKDV-LRSLGSKTSPEEVKRVMDEIDT 63 (153)
Q Consensus 6 ~~~~~~~~~~~~l~~~f~~~d~~-~~g~l~~~e~~~~-l~~~~~~~~~~~~~~l~~~~d~ 63 (153)
-+..+++.+++.++.+...+-.. .++.-+..-.... +..-+.++...+++.++..+-.
T Consensus 89 maT~f~~nEielfrkalE~im~sed~~~asst~~~~~vlq~k~k~L~ks~iE~lLqkf~q 148 (235)
T KOG4718|consen 89 MATGFTANEIELFRKALEKIMSSEDCHIASSTAYNDIVLQAKSKPLKKSRIEELLQKFIQ 148 (235)
T ss_pred hcCCCCHHHHHHHHHHHHHHHhhhHhhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 35678899999888888766433 3443333333322 2333667888888888887643
No 303
>TIGR01209 RNA ligase, Pab1020 family. Members of this family are found, so far, in a single copy per genome and largely in thermophiles, of which only Aquifex aeolicus is bacterial rather than archaeal. PSI-BLAST converges after a single iteration to the whole of this family and reveals no convincing similarity to any other protein. The member protein Pab1020 has been characterized as an RNA ligase with circularization activity.
Probab=21.69 E-value=3.4e+02 Score=20.12 Aligned_cols=104 Identities=10% Similarity=0.137 Sum_probs=59.2
Q ss_pred HHhhCCCCCCccCHHHHHHHHHHhCCCC-------CHH----HHHHHHHHhccCC-CCceeHHH--HHHHHhcCCCCchH
Q 031791 22 FNKFDKNGDGKISADELKDVLRSLGSKT-------SPE----EVKRVMDEIDTDG-DGYIDFKE--FSTFHLAGGSTDGT 87 (153)
Q Consensus 22 f~~~d~~~~g~l~~~e~~~~l~~~~~~~-------~~~----~~~~l~~~~d~~~-~~~i~~~e--f~~~~~~~~~~~~~ 87 (153)
|..+|.+....+++++-..++..+|++. +.. .+..++..++..+ .|.|=... -..-++...+....
T Consensus 163 FDI~d~~t~~~L~~~er~~l~e~yglp~Vpvlg~~~~~~~~~~~~eii~~L~~~gREGVVlK~~~~~~~~~KYtT~~~n~ 242 (374)
T TIGR01209 163 FDIREGKTNRSLPVEERLELAEKYGLPHVEILGVYTADEAVEEIYEIIERLNKEGREGVVMKDPEMRVKPLKYTTSYANI 242 (374)
T ss_pred EEEEECCCCccCCHHHHHHHHHHCCCCccceeeEEcHHHHHHHHHHHHHHhhhcCcceEEEcCccccCCcceeecCccCh
Confidence 4445556678899999999999887764 233 3445555555433 44332111 11222224444555
Q ss_pred HHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHH
Q 031791 88 KELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKD 125 (153)
Q Consensus 88 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~ 125 (153)
..+..+|+.+-.-+.+++...=++..+.......++++
T Consensus 243 ~Di~~~~~~~~d~g~df~~sRi~Re~f~~~E~~~~~~e 280 (374)
T TIGR01209 243 NDIKYAARYFFELGRDFFFSRILREAFQSYEFGEKGEE 280 (374)
T ss_pred HHHHHHHhhccccCchHHHHHHHHHHHHHHHhCCchHH
Confidence 77777887776566666666566666655544444443
No 304
>PF03556 Cullin_binding: Cullin binding; InterPro: IPR005176 The eukaryotic defective in cullin neddylation (DCN) protein family, may contribute to neddylation of cullin components of SCF-type E3 ubiquitin ligase complexes. These multi-protein complexes are required for polyubiquitination and subsequent degradation of target proteins by the 26S proteasome []. Proteins in the DCN family include: Yeast DCN1. Vertebrate DCN1-like protein 1. Vertebrate DCN1-like protein 2. Vertebrate DCN1-like protein 4. This entry represents a domain found within DCN family proteins. Its function is unknown but it has been suggested that it has the features of a basic helix-loop-helix leucine zipper (bHLH-ZIP) domain [].It is often found in association with a UBA-like domain (IPR009060 from INTERPRO).; PDB: 3TDI_A 2IS9_A 3O6B_E 3O2P_A 3BQ3_A 3TDZ_A 3TDU_B.
Probab=21.64 E-value=1.9e+02 Score=17.20 Aligned_cols=82 Identities=12% Similarity=0.097 Sum_probs=37.2
Q ss_pred CCCCceeHHHHHHHHhcCCCCchHHHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccH
Q 031791 64 DGDGYIDFKEFSTFHLAGGSTDGTKELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKVDADGDGHVNF 143 (153)
Q Consensus 64 ~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~ 143 (153)
.+.+.++.+-=+.++...........+...+..+...+...|+++.-..++.-+. .+..-+..+|.++.=-+-+
T Consensus 36 ~~qr~l~~e~Ai~~W~llf~~~~~~~l~~w~~Fl~~~~~k~IskD~W~~~l~F~~------~~~~dls~Yde~~AWP~li 109 (117)
T PF03556_consen 36 EGQRSLPLETAIAYWRLLFSGRFFPLLDSWIEFLEEKYKKAISKDTWNQFLDFFK------TVDEDLSNYDEEGAWPSLI 109 (117)
T ss_dssp TT-SSEEHHHHHHHHHHHTTTTSSCCHHHHHHHHHHCT-SEEEHHHHHHHHHHHH------H-HCCHCC--TTSSS-HHH
T ss_pred cccCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcCCcCcChhHHHHHHHHHH------hcCccccCCCCCCCCcHHH
Confidence 3345566666555555433222113334444444444556677776666655321 1122344444333223556
Q ss_pred HHHHHHhh
Q 031791 144 EEFKKMMT 151 (153)
Q Consensus 144 ~ef~~~l~ 151 (153)
+||++.++
T Consensus 110 DeFVe~~r 117 (117)
T PF03556_consen 110 DEFVEWLR 117 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 77776653
No 305
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=21.61 E-value=80 Score=16.60 Aligned_cols=14 Identities=21% Similarity=0.584 Sum_probs=9.3
Q ss_pred CCcccHHHHHHHhh
Q 031791 138 DGHVNFEEFKKMMT 151 (153)
Q Consensus 138 ~g~is~~ef~~~l~ 151 (153)
.|.|+++.|++.++
T Consensus 37 ~g~I~~d~~lK~vR 50 (65)
T PF09454_consen 37 RGSIDLDTFLKQVR 50 (65)
T ss_dssp TTSS-HHHHHHHHH
T ss_pred cCCCCHHHHHHHHH
Confidence 56788888877665
No 306
>TIGR02613 mob_myst_B mobile mystery protein B. Members of this protein family, which we designate mobile mystery protein B, are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein A (TIGR02612), a member of the family of helix-turn-helix DNA binding proteins (pfam01381). This protein is encoded by the downstream member of the gene pair and belongs to the Fic protein family (pfam02661), where Fic (filamentation induced by cAMP) is a regulator of cell division. The characteristics of having a two-gene operon in a varied context and often on plasmids, with one member affecting cell division and the other able to bind DNA, suggests similarity to addiction modules.
Probab=21.58 E-value=2.4e+02 Score=18.29 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=16.4
Q ss_pred CCCCCCccHHHHHHHHHHhCC
Q 031791 99 MDQNGLISANELHAVLKKLGE 119 (153)
Q Consensus 99 ~~~~g~i~~~e~~~~l~~~~~ 119 (153)
.||+|.+.+-=+..++...|.
T Consensus 126 ~DGNGRt~Rll~~l~L~~~g~ 146 (186)
T TIGR02613 126 PNGNGRHARLATDLLLEQQGY 146 (186)
T ss_pred CCCCcHHHHHHHHHHHHHCCC
Confidence 488999888777777777774
No 307
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=21.46 E-value=2.3e+02 Score=19.05 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=26.1
Q ss_pred CCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 031791 99 MDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKV 133 (153)
Q Consensus 99 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 133 (153)
.|.+|..+.+++...++..+..++.+.+..+...-
T Consensus 54 lD~~Gwa~i~~l~~~~~k~~~~~~~~~l~~iV~~d 88 (211)
T COG1859 54 LDEEGWADIDELLEGLRKAGRWLTRELLLAVVATD 88 (211)
T ss_pred eccccchhHHHHHHHHHhhccCCCHHHHHHHHhcC
Confidence 36778888888888888877777776666666544
No 308
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=21.42 E-value=5e+02 Score=21.92 Aligned_cols=86 Identities=20% Similarity=0.240 Sum_probs=46.7
Q ss_pred CCCceeHHHHHHHHhcCC-CCchHHHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHhh-----cCCCC
Q 031791 65 GDGYIDFKEFSTFHLAGG-STDGTKELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMIKKV-----DADGD 138 (153)
Q Consensus 65 ~~~~i~~~ef~~~~~~~~-~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~-----d~~~~ 138 (153)
....|+..++..++.... .......+..-|.- |.-..+-++.++|..+...+-.+-.-..+.+..+.+ +....
T Consensus 157 ~~~~isard~k~~l~qvn~k~~~~kfl~e~~te-d~~~k~dlsf~~f~~ly~~lmfs~~~a~l~e~~~~~~~~~~~~~d~ 235 (1267)
T KOG1264|consen 157 RENSISARDLKTILPQVNFKVSSAKFLKEKFTE-DGARKDDLSFEQFHLLYKKLMFSQQKAILLEFKKDFILGNTDRPDA 235 (1267)
T ss_pred hhhheeHHhhhcccccceEEechHHHHHHHHhH-hhhccccccHHHHHHHHHHHhhccchhhhhcccchhhhcCCCCccc
Confidence 445588888877765421 12222222222222 334567899999999998764332222222221111 22222
Q ss_pred CcccHHHHHHHhh
Q 031791 139 GHVNFEEFKKMMT 151 (153)
Q Consensus 139 g~is~~ef~~~l~ 151 (153)
..|++.+|.++|.
T Consensus 236 ~vV~~~ef~rFL~ 248 (1267)
T KOG1264|consen 236 SVVYLQEFQRFLI 248 (1267)
T ss_pred eEeeHHHHHHHHH
Confidence 5799999998875
No 309
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3.2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.
Probab=21.38 E-value=6.8 Score=25.29 Aligned_cols=44 Identities=11% Similarity=0.305 Sum_probs=30.0
Q ss_pred HHHHHHHhhhhcCCCCCCccHHHHHHHHHHhCCCCCHHHHHHHH
Q 031791 87 TKELKDAFDLYDMDQNGLISANELHAVLKKLGEKSSLKDCVNMI 130 (153)
Q Consensus 87 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 130 (153)
.+.++.+|.-||++.--..+.+++..++..-+.--+..-+..++
T Consensus 48 r~~~r~aF~~Fd~~~vA~~~e~~ie~l~~d~~iIRnr~KI~Avi 91 (179)
T PF03352_consen 48 REAFREAFAGFDPEKVAKMDEEDIERLMQDPGIIRNRRKIRAVI 91 (179)
T ss_dssp HHHHHHHTGGGHHHHHHT--HHHHHHHTTSTTSS--HHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHcCCHHHHHHHhcCcchhhhHHHHHHHH
Confidence 47788999999988777788888888888766555555555544
No 310
>PF04963 Sigma54_CBD: Sigma-54 factor, core binding domain; InterPro: IPR007046 This domain makes a direct interaction with the core RNA polymerase, to form an enhancer dependent holoenzyme []. The centre of this domain contains a very weak similarity to a helix-turn-helix motif, which may represent a DNA binding domain.; GO: 0003677 DNA binding, 0006352 transcription initiation, DNA-dependent; PDB: 2K9L_A 2K9M_A.
Probab=21.03 E-value=1.9e+02 Score=18.93 Aligned_cols=51 Identities=27% Similarity=0.535 Sum_probs=27.6
Q ss_pred CCCCCccCHHHHHHHHHHhCCCCCHHHHHH---HHHHhccCCCCceeHHHHHHHHhc
Q 031791 27 KNGDGKISADELKDVLRSLGSKTSPEEVKR---VMDEIDTDGDGYIDFKEFSTFHLA 80 (153)
Q Consensus 27 ~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~---l~~~~d~~~~~~i~~~ef~~~~~~ 80 (153)
.|.+|+++. ....+...++ .+.+++.. +++.+++-|.|--+..|.+.+-..
T Consensus 45 LD~~GyL~~-~~~eia~~l~--~~~~~v~~~l~~lQ~leP~GigAr~l~EcLllQl~ 98 (194)
T PF04963_consen 45 LDDDGYLTE-SLEEIAEELG--VSEEEVEKALELLQSLEPAGIGARDLQECLLLQLE 98 (194)
T ss_dssp BTTTSTCSS--HHHHHHHCT--S-HHHHHHHHHHHHTTSS--TTTS-TTHHHHHHHH
T ss_pred CCCCCccCC-CHHHHHHHhC--CCHHHHHHHHHHHHcCCCCccCcCCHHHHHHHHHh
Confidence 366788763 3344444444 44554444 555678888888888887665443
No 311
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=20.88 E-value=1.5e+02 Score=19.71 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=20.5
Q ss_pred HhhhhcCCCCCCccHHHHHHHHHHh
Q 031791 93 AFDLYDMDQNGLISANELHAVLKKL 117 (153)
Q Consensus 93 ~f~~~d~~~~g~i~~~e~~~~l~~~ 117 (153)
+..-+|.+++|.++.+|+..+....
T Consensus 55 ll~~~D~~~dg~~~~~el~~l~~~~ 79 (212)
T PF06226_consen 55 LLEGLDKDGDGKLDPEELAALAKEI 79 (212)
T ss_pred HHHhhhhcccCCCCHHHHHHHHHHH
Confidence 3446799999999999999888754
No 312
>PRK10026 arsenate reductase; Provisional
Probab=20.80 E-value=1.7e+02 Score=18.19 Aligned_cols=14 Identities=21% Similarity=0.472 Sum_probs=6.3
Q ss_pred ccHHHHHHHHHHhC
Q 031791 105 ISANELHAVLKKLG 118 (153)
Q Consensus 105 i~~~e~~~~l~~~~ 118 (153)
+|.+|+..++...|
T Consensus 39 pt~~eL~~~l~~~g 52 (141)
T PRK10026 39 PTRDELVKLIADMG 52 (141)
T ss_pred cCHHHHHHHHHhCC
Confidence 44444444444443
No 313
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=20.68 E-value=3.2e+02 Score=22.34 Aligned_cols=56 Identities=16% Similarity=0.355 Sum_probs=35.7
Q ss_pred HHHHHHhccCCCCceeHHHHHHHHhcCCCCchHHHHHHHhhhhcCCCCCCccHHHHHHHHHHh
Q 031791 55 KRVMDEIDTDGDGYIDFKEFSTFHLAGGSTDGTKELKDAFDLYDMDQNGLISANELHAVLKKL 117 (153)
Q Consensus 55 ~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 117 (153)
..+|......+...+....+..++. .+..+.++..++...++.|+++.|+......
T Consensus 407 ~~iF~nv~~p~~~~i~ld~~~~f~~-------~E~a~~~~slfe~~~~~~Itrs~~~~~iv~~ 462 (714)
T KOG4629|consen 407 RKIFKNVAKPGVILIDLDDLLRFMG-------DEEAERAFSLFEGASDENITRSSFKEWIVNI 462 (714)
T ss_pred HHHHhccCCCCccchhhhhhhhcCC-------HHHHHHHHHhhhhhcccCccHHHHHHHHHHH
Confidence 3455554444434455555555543 3777888888877555559999998887764
No 314
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=20.49 E-value=94 Score=18.06 Aligned_cols=18 Identities=22% Similarity=0.482 Sum_probs=11.2
Q ss_pred CCCCccHHHHHHHHHHhC
Q 031791 101 QNGLISANELHAVLKKLG 118 (153)
Q Consensus 101 ~~g~i~~~e~~~~l~~~~ 118 (153)
.+|.|++++|.+.+..+.
T Consensus 3 ~d~~~~~~~F~~~W~sl~ 20 (114)
T PF09066_consen 3 EDGSMDPEEFQEMWKSLP 20 (114)
T ss_dssp TT----HHHHHHHHHHS-
T ss_pred CCCccCHHHHHHHHHhCC
Confidence 368999999999999863
Done!