BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031792
         (153 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1PCF|A Chain A, Human Transcriptional Coactivator Pc4 C-Terminal Domain
 pdb|1PCF|B Chain B, Human Transcriptional Coactivator Pc4 C-Terminal Domain
 pdb|1PCF|C Chain C, Human Transcriptional Coactivator Pc4 C-Terminal Domain
 pdb|1PCF|D Chain D, Human Transcriptional Coactivator Pc4 C-Terminal Domain
 pdb|1PCF|E Chain E, Human Transcriptional Coactivator Pc4 C-Terminal Domain
 pdb|1PCF|F Chain F, Human Transcriptional Coactivator Pc4 C-Terminal Domain
 pdb|1PCF|G Chain G, Human Transcriptional Coactivator Pc4 C-Terminal Domain
 pdb|1PCF|H Chain H, Human Transcriptional Coactivator Pc4 C-Terminal Domain
 pdb|2C62|A Chain A, Crystal Structure Of The Human Transcription Cofactor Pc4
           In Complex With Single-Stranded Dna
 pdb|2C62|B Chain B, Crystal Structure Of The Human Transcription Cofactor Pc4
           In Complex With Single-Stranded Dna
 pdb|2PHE|A Chain A, Model For Vp16 Binding To Pc4
 pdb|2PHE|B Chain B, Model For Vp16 Binding To Pc4
          Length = 66

 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 45/65 (69%), Gaps = 1/65 (1%)

Query: 85  ICQLNKKRRVTIQDFKGKTLVSIREYYTKGGKEL-PSAKGISLTEEQWSALRKNVSAIDT 143
           + Q+ K R V+++DFKGK L+ IREY+     E+ P  KGISL  EQWS L++ +S ID 
Sbjct: 2   MFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDD 61

Query: 144 AVKKM 148
           AV+K+
Sbjct: 62  AVRKL 66


>pdb|4AGH|A Chain A, Structural Features Of Ssdna Binding Protein Mosub1 From
           Magnaporthe Oryzae
          Length = 158

 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 74  NAEYDDEGNLIICQLNKKRRVTIQDFKGKTLVSIREYYTKGGKELPSAKGISLTEEQWSA 133
            ++ D EGN    +++ KRRV I  FK    ++IREYY  GG+  P  KGI LT +Q++A
Sbjct: 38  GSQVDAEGNPF-WEISDKRRVGISQFKKMDFINIREYYEAGGEMKPGKKGIGLTVDQYTA 96

Query: 134 LRKNVSAIDTAVK 146
             K + AI+  ++
Sbjct: 97  FLKAIPAINAELR 109


>pdb|3DMC|A Chain A, Crystal Structure Of A Ntf2-Like Protein (Ava_2261) From
           Anabaena Variabilis Atcc 29413 At 1.65 A Resolution
 pdb|3DMC|B Chain B, Crystal Structure Of A Ntf2-Like Protein (Ava_2261) From
           Anabaena Variabilis Atcc 29413 At 1.65 A Resolution
          Length = 134

 Score = 27.3 bits (59), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 5/96 (5%)

Query: 25  TTEFQIRKQASEKMGLDLSQPEYKAFVRHKSKXXXXXXXXXXXXAVKNDNA----EYDDE 80
           T +F       E  GL++ +   K F  + S+             V ++      E+ DE
Sbjct: 38  TEDFTFWFPXGEFHGLNVGKERAKEFFTYVSESFHTGIQISSLDRVTSNETTVVFEFRDE 97

Query: 81  GNLIICQLNKKRRVTIQDFKGKTLVSIREYYTKGGK 116
           G L + +  K R     D +G  + S REY+   GK
Sbjct: 98  G-LFLGKPYKNRVAVSFDVRGDKICSYREYFGSDGK 132


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.127    0.336 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,703,478
Number of Sequences: 62578
Number of extensions: 126562
Number of successful extensions: 267
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 264
Number of HSP's gapped (non-prelim): 4
length of query: 153
length of database: 14,973,337
effective HSP length: 90
effective length of query: 63
effective length of database: 9,341,317
effective search space: 588502971
effective search space used: 588502971
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.7 bits)