BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031792
(153 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O65155|KELP_ARATH RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis
thaliana GN=KELP PE=1 SV=1
Length = 165
Score = 165 bits (418), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 85/153 (55%), Positives = 115/153 (75%), Gaps = 13/153 (8%)
Query: 13 VREILVKSDMTETTEFQIRKQASEKMGLDLSQPEYKAFVR---------HKSKE----EQ 59
V EIL +SDM E TEF++RK ASEK+ +DLS+ +KAFVR +++E +
Sbjct: 13 VIEILSESDMKEITEFKVRKLASEKLAIDLSEKSHKAFVRSVVEKFLDEERAREYENSQV 72
Query: 60 EEEEEEENEAVKNDNAEYDDEGNLIICQLNKKRRVTIQDFKGKTLVSIREYYTKGGKELP 119
+EEE+ ++ N E+DD+G+LIIC+L+ KRRVTIQ+FKGK+LVSIREYY K GKELP
Sbjct: 73 NKEEEDGDKDCGKGNKEFDDDGDLIICRLSDKRRVTIQEFKGKSLVSIREYYKKDGKELP 132
Query: 120 SAKGISLTEEQWSALRKNVSAIDTAVKKMQSRI 152
++KGISLT+EQWS +KN+ AI+ AVKKM+SR+
Sbjct: 133 TSKGISLTDEQWSTFKKNMPAIENAVKKMESRV 165
>sp|O65154|KIWI_ARATH RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis
thaliana GN=KIWI PE=1 SV=1
Length = 107
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 60/103 (58%), Gaps = 6/103 (5%)
Query: 52 RHKSKEEQEEEEEEENEA------VKNDNAEYDDEGNLIICQLNKKRRVTIQDFKGKTLV 105
R K K+E ++E+E V + D ++++C ++K RRV+++++ GK +
Sbjct: 4 RGKRKDEDVRASDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGKIWI 63
Query: 106 SIREYYTKGGKELPSAKGISLTEEQWSALRKNVSAIDTAVKKM 148
IRE+Y K GK LP KGISL+ +QW+ LR + I+ A+ +
Sbjct: 64 DIREFYVKDGKTLPGKKGISLSVDQWNTLRNHAEDIEKALSDL 106
>sp|Q5R6D0|TCP4_PONAB Activated RNA polymerase II transcriptional coactivator p15
OS=Pongo abelii GN=SUB1 PE=2 SV=1
Length = 127
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 85 ICQLNKKRRVTIQDFKGKTLVSIREYYTKGGKEL-PSAKGISLTEEQWSALRKNVSAIDT 143
+ Q+ K R V+++DFKGK L+ IREY+ E+ P KGISL EQWS L++ +S ID
Sbjct: 63 MFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDD 122
Query: 144 AVKKM 148
AV+K+
Sbjct: 123 AVRKL 127
>sp|Q4R947|TCP4_MACFA Activated RNA polymerase II transcriptional coactivator p15
OS=Macaca fascicularis GN=SUB1 PE=2 SV=1
Length = 127
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 85 ICQLNKKRRVTIQDFKGKTLVSIREYYTKGGKEL-PSAKGISLTEEQWSALRKNVSAIDT 143
+ Q+ K R V+++DFKGK L+ IREY+ E+ P KGISL EQWS L++ +S ID
Sbjct: 63 MFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDD 122
Query: 144 AVKKM 148
AV+K+
Sbjct: 123 AVRKL 127
>sp|P53999|TCP4_HUMAN Activated RNA polymerase II transcriptional coactivator p15 OS=Homo
sapiens GN=SUB1 PE=1 SV=3
Length = 127
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 85 ICQLNKKRRVTIQDFKGKTLVSIREYYTKGGKEL-PSAKGISLTEEQWSALRKNVSAIDT 143
+ Q+ K R V+++DFKGK L+ IREY+ E+ P KGISL EQWS L++ +S ID
Sbjct: 63 MFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDD 122
Query: 144 AVKKM 148
AV+K+
Sbjct: 123 AVRKL 127
>sp|P11031|TCP4_MOUSE Activated RNA polymerase II transcriptional coactivator p15 OS=Mus
musculus GN=Sub1 PE=1 SV=3
Length = 127
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 85 ICQLNKKRRVTIQDFKGKTLVSIREYYTKGGKEL-PSAKGISLTEEQWSALRKNVSAIDT 143
+ Q+ K R V+++DFKGK L+ IREY+ E+ P KGISL EQWS L++ +S ID
Sbjct: 63 MFQIGKMRYVSVRDFKGKILIDIREYWMDSEGEMKPGRKGISLNMEQWSQLKEQISDIDD 122
Query: 144 AVKKM 148
AV+K+
Sbjct: 123 AVRKL 127
>sp|Q63396|TCP4_RAT Activated RNA polymerase II transcriptional coactivator p15
OS=Rattus norvegicus GN=Sub1 PE=2 SV=3
Length = 127
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 85 ICQLNKKRRVTIQDFKGKTLVSIREYYTKGGKEL-PSAKGISLTEEQWSALRKNVSAIDT 143
+ Q+ K R V+++DFKGK L+ IREY+ E+ P KGISL EQWS L++ +S ID
Sbjct: 63 MFQIGKMRYVSVRDFKGKILIDIREYWMDSEGEMKPGRKGISLNMEQWSQLKEQISDIDD 122
Query: 144 AVKKM 148
AV+K+
Sbjct: 123 AVRKL 127
>sp|Q5ZK63|TCP4_CHICK Activated RNA polymerase II transcriptional coactivator p15
OS=Gallus gallus GN=SUB1 PE=2 SV=1
Length = 126
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 85 ICQLNKKRRVTIQDFKGKTLVSIREYYTKGGKEL-PSAKGISLTEEQWSALRKNVSAIDT 143
+ Q+ K R V+++DFKGK L+ IREY+ E+ P KGISL EQW+ L++ +S ID
Sbjct: 62 MFQIGKMRYVSVRDFKGKVLIDIREYWMDQEGEMKPGRKGISLNPEQWNQLKEQISDIDD 121
Query: 144 AVKKM 148
AV+K+
Sbjct: 122 AVRKL 126
>sp|Q872F4|TCP4_NEUCR Putative RNA polymerase II transcriptional coactivator
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=80A10.210 PE=3 SV=1
Length = 172
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 78 DDEGNLIICQLNKKRRVTIQDFKGKTLVSIREYYTKGGKELPSAKGISLTEEQWSALRKN 137
D +GN +L RR++ F+ TLV+IREYY GGK +P KGISL+ Q+ L K
Sbjct: 39 DQDGN-TFWELGNNRRISSSVFRNTTLVNIREYYDAGGKLMPGKKGISLSLAQYQNLLKV 97
Query: 138 VSAIDTAVK 146
+ ++ ++
Sbjct: 98 IPQLNADLR 106
>sp|P54000|SUB1_YEAST RNA polymerase II transcriptional coactivator SUB1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SUB1 PE=1
SV=1
Length = 292
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 85 ICQLNKKRRVTIQDFKGKTLVSIREYY--TKGGKELPSAKGISLTEEQWSALRKNVSAID 142
I L K +RVT++ F+ L+ IREYY + G+ P KGISLTE+ + L K+ ID
Sbjct: 40 IFDLGKNKRVTVRQFRNINLIDIREYYLDSSTGEMKPGKKGISLTEDLYDELLKHRLNID 99
Query: 143 TAVKKMQSR 151
A++++ S+
Sbjct: 100 EALRRLGSK 108
>sp|P87294|TCP4_SCHPO Putative RNA polymerase II transcriptional coactivator
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC16A10.02 PE=1 SV=1
Length = 136
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 91 KRRVTIQDFKGKTLVSIREYYTKGGKELPSAKGISLTEEQWSALRKNVSAIDTAVKKMQS 150
K+R+T+ +F+G V IREYY K G LP KGI+L +W L++ + +D ++ + S
Sbjct: 37 KKRITLSEFRGTRYVHIREYYEKDGDMLPGKKGIALNINEWKKLKQLIHEVDDSLGLVDS 96
>sp|Q94045|TCP4_CAEEL Putative RNA polymerase II transcriptional coactivator
OS=Caenorhabditis elegans GN=T13F2.2 PE=3 SV=1
Length = 124
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 78 DDEGNLIICQLNKKRRVTIQDFKGKTLVSIREYYT--KGGKELPSAKGISLTEEQWSALR 135
D +GN + ++ R T+ FKGK V+IREYY K +PS KGISL++ QW+ L+
Sbjct: 56 DSDGNEMF-EIGNLRYATVSKFKGKEYVNIREYYIDRDSQKMMPSRKGISLSKAQWANLK 114
Query: 136 KNVSAID 142
+ ID
Sbjct: 115 DLIPEID 121
>sp|Q9VLR5|TCP4_DROME RNA polymerase II transcriptional coactivator OS=Drosophila
melanogaster GN=Ssb-c31a PE=2 SV=1
Length = 110
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 30/43 (69%)
Query: 92 RRVTIQDFKGKTLVSIREYYTKGGKELPSAKGISLTEEQWSAL 134
R+V I +F+G+ V IRE+Y KGG+ LP KGISL+ QW L
Sbjct: 55 RQVRINEFRGRKSVDIREFYDKGGQILPGKKGISLSLIQWKKL 97
>sp|Q9FHX8|MDA3_ARATH Mediator-associated protein 3 OS=Arabidopsis thaliana
GN=At5g42060 PE=1 SV=1
Length = 92
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 8 KIEGTVREILVKSDMTETTEFQIRKQASEKMGLDLSQPEYKAFVR 52
KI+ TV++IL S++ + TE + R++AS K+ LDLSQ YK V+
Sbjct: 18 KIKKTVKKILESSNLYKITEIKAREEASLKLDLDLSQDPYKVIVK 62
>sp|A7GJG3|RLMH_CLOBL Ribosomal RNA large subunit methyltransferase H OS=Clostridium
botulinum (strain Langeland / NCTC 10281 / Type F)
GN=rlmH PE=3 SV=1
Length = 159
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 58 EQEEEEEEENEAVKNDNAEYDDEGNLIICQLNKKRRVTIQDFKGKTLVS 106
E +E+ +N ++K +N D EGNLI+ + V D KGK++ S
Sbjct: 37 EVTDEKTPDNASLKEENIIKDKEGNLILKHIKDNSFVIALDLKGKSITS 85
>sp|A8DYE2|TRPCG_DROME Transient receptor potential cation channel trpm OS=Drosophila
melanogaster GN=trpm PE=1 SV=1
Length = 2023
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 28 FQIRKQASEKMGLDLSQPEYKAFVRHKSKEEQEEEEEEENEAVKNDNAEYDD 79
+ RK + K+ L L+ P Y + KSKEE ++ + E E ++N N + DD
Sbjct: 803 LRTRKNTNFKVILGLAMPFYIRQLDFKSKEELQQMPQTEEEHLENQNLDNDD 854
>sp|Q8CFC2|MYT1_MOUSE Myelin transcription factor 1 OS=Mus musculus GN=Myt1 PE=1 SV=1
Length = 1127
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 24 ETTEFQIRKQASEKMGLDLS--QPEYKAFVRHKSKEEQEEEEEEENEAVKNDNAEYD--D 79
+T+ ++K + E G +LS +PEY V +S ++++E+ + AV +++ YD
Sbjct: 317 DTSHTSVQKASPEFRGPELSSPKPEYSVIVEVRSDDDKDEDSRSQKSAVTDESEMYDMMT 376
Query: 80 EGNL 83
GNL
Sbjct: 377 RGNL 380
>sp|C1FNH5|RLMH_CLOBJ Ribosomal RNA large subunit methyltransferase H OS=Clostridium
botulinum (strain Kyoto / Type A2) GN=rlmH PE=3 SV=1
Length = 159
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 58 EQEEEEEEENEAVKNDNAEYDDEGNLIICQLNKKRRVTIQDFKGKTLVS 106
E +E+ +N ++K +N + EGNLI+ + V D KGK++ S
Sbjct: 37 EVADEKTPDNASLKEENIIKEKEGNLILKHIKDNSFVIALDLKGKSITS 85
>sp|A5I7U4|RLMH_CLOBH Ribosomal RNA large subunit methyltransferase H OS=Clostridium
botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type
A) GN=rlmH PE=3 SV=1
Length = 159
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 58 EQEEEEEEENEAVKNDNAEYDDEGNLIICQLNKKRRVTIQDFKGKTLVS 106
E +E+ +N ++K +N + EGNLI+ + V D KGK++ S
Sbjct: 37 EVADEKTPDNASLKEENIIKEKEGNLILKHIKDNSFVIALDLKGKSITS 85
>sp|A7FZD1|RLMH_CLOB1 Ribosomal RNA large subunit methyltransferase H OS=Clostridium
botulinum (strain ATCC 19397 / Type A) GN=rlmH PE=3 SV=1
Length = 159
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 58 EQEEEEEEENEAVKNDNAEYDDEGNLIICQLNKKRRVTIQDFKGKTLVS 106
E +E+ +N ++K +N + EGNLI+ + V D KGK++ S
Sbjct: 37 EVADEKTPDNASLKEENIIKEKEGNLILKHIKDNSFVIALDLKGKSITS 85
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.124 0.323
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,111,003
Number of Sequences: 539616
Number of extensions: 2266611
Number of successful extensions: 37811
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 380
Number of HSP's that attempted gapping in prelim test: 28239
Number of HSP's gapped (non-prelim): 5233
length of query: 153
length of database: 191,569,459
effective HSP length: 107
effective length of query: 46
effective length of database: 133,830,547
effective search space: 6156205162
effective search space used: 6156205162
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 56 (26.2 bits)