Query 031792
Match_columns 153
No_of_seqs 169 out of 307
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 08:17:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031792.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031792hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pcf_A P15, transcriptional co 100.0 2.5E-31 8.5E-36 182.8 6.9 64 85-148 2-66 (66)
2 4agh_A Mosub1, transcription c 100.0 4E-30 1.4E-34 202.3 7.7 78 73-151 37-114 (158)
3 1q1v_A DEK protein; winged-hel 99.4 8.3E-14 2.9E-18 96.2 5.0 53 3-57 11-64 (70)
4 4g06_A Uncharacterized protein 93.9 0.15 5.2E-06 35.7 6.0 45 92-139 32-77 (79)
5 2l3a_A Uncharacterized protein 93.4 0.19 6.6E-06 35.4 5.9 46 91-139 26-72 (82)
6 3pm7_A Uncharacterized protein 93.4 0.1 3.5E-06 36.7 4.3 46 92-140 25-71 (80)
7 2ltd_A Uncharacterized protein 85.8 0.16 5.3E-06 35.7 0.0 45 92-139 25-70 (80)
8 1nq4_A Oxytetracycline polyket 73.5 4.9 0.00017 27.2 4.4 45 1-45 1-62 (95)
9 2cg5_B Fatty acid synthase; tr 73.2 2.8 9.5E-05 29.2 3.1 39 6-44 8-60 (91)
10 2dnw_A Acyl carrier protein; A 72.8 5.2 0.00018 27.0 4.4 44 1-44 8-69 (99)
11 3ce7_A Specific mitochodrial a 67.0 8.1 0.00028 27.0 4.5 42 4-45 15-78 (107)
12 2l4b_A Acyl carrier protein; i 65.0 17 0.0006 23.5 5.6 41 4-44 8-65 (88)
13 1or5_A Acyl carrier protein; A 62.7 9.5 0.00033 24.4 3.9 44 1-44 1-60 (83)
14 3dmc_A NTF2-like protein; stru 59.1 16 0.00054 25.7 4.9 24 93-116 109-132 (134)
15 1x3o_A Acyl carrier protein; s 58.1 29 0.00099 21.5 5.6 41 4-44 5-59 (80)
16 1f80_D Acyl carrier protein; t 57.0 24 0.00081 22.2 5.1 41 4-44 7-61 (81)
17 2kwl_A ACP, acyl carrier prote 55.1 33 0.0011 21.8 5.6 24 22-45 41-64 (84)
18 1fh1_A NODF, nodulation protei 52.6 4.9 0.00017 26.9 1.2 43 1-43 1-64 (92)
19 2prv_A Uncharacterized protein 51.8 16 0.00055 26.5 4.0 47 6-54 4-51 (153)
20 2lol_A ACP, acyl carrier prote 50.0 43 0.0015 20.9 5.5 23 23-45 39-61 (81)
21 2icg_A LIN2918 protein; hypoth 49.4 11 0.00038 27.5 2.7 33 20-54 21-54 (160)
22 1l0i_A Acyl carrier protein; a 48.0 39 0.0013 21.0 5.0 40 5-44 4-57 (78)
23 1af8_A Actinorhodin polyketide 48.0 18 0.00061 23.2 3.4 45 1-45 1-63 (86)
24 3trk_A Nonstructural polyprote 47.4 7 0.00024 33.4 1.5 14 122-135 23-36 (324)
25 2cnr_A FAS, ACP, acyl carrier 46.4 51 0.0017 20.5 5.4 23 22-44 39-61 (82)
26 2qnw_A Acyl carrier protein; m 44.0 57 0.002 20.6 5.4 23 22-44 39-61 (82)
27 2jq4_A AGR_C_4658P, hypothetic 43.1 21 0.00072 24.6 3.3 23 22-44 55-77 (105)
28 2it9_A Hypothetical protein; s 40.5 30 0.001 25.9 3.9 30 124-153 32-61 (127)
29 1vku_A Acyl carrier protein; T 39.1 55 0.0019 22.3 4.9 24 22-45 48-71 (100)
30 1ojj_A Endoglucanase I; hydrol 38.5 32 0.0011 30.3 4.3 40 90-129 263-313 (402)
31 2nvn_A Hypothetical protein; s 37.7 28 0.00097 25.9 3.4 30 124-153 34-63 (122)
32 2ehs_A ACP, acyl carrier prote 37.5 68 0.0023 19.5 4.8 23 22-44 33-55 (77)
33 1dny_A Non-ribosomal peptide s 37.2 68 0.0023 21.0 5.0 41 4-44 14-65 (91)
34 3gzm_A Acyl carrier protein; h 37.0 69 0.0024 20.1 4.9 24 21-44 36-59 (81)
35 2ava_A ACP I, acyl carrier pro 34.2 80 0.0027 19.7 4.9 23 22-44 36-58 (82)
36 2ju1_A Erythronolide synthase; 34.1 85 0.0029 20.0 5.1 39 6-44 22-74 (95)
37 2jro_A Uncharacterized protein 31.9 57 0.002 22.4 3.9 45 99-150 20-65 (78)
38 4dxe_H ACP, acyl carrier prote 31.6 89 0.003 21.3 5.0 40 5-44 27-80 (101)
39 1j3m_A The conserved hypotheti 31.4 15 0.00051 26.1 0.9 39 6-44 12-50 (129)
40 2cgq_A Acyl carrier protein AC 31.3 34 0.0012 24.2 2.9 40 6-45 28-80 (113)
41 1gpi_A Exoglucanase I; hydrola 30.5 44 0.0015 29.7 3.9 40 90-129 272-325 (431)
42 4gua_A Non-structural polyprot 29.5 19 0.00066 33.5 1.5 15 122-136 28-42 (670)
43 2kr5_A PKS, aflatoxin biosynth 29.4 99 0.0034 19.4 4.7 41 4-44 11-64 (89)
44 1klp_A ACP, ACPM, meromycolate 29.3 1.3E+02 0.0046 20.4 5.7 22 23-44 40-61 (115)
45 2pag_A Hypothetical protein; n 29.2 68 0.0023 23.2 4.2 45 8-54 3-49 (135)
46 3vp5_A Transcriptional regulat 28.9 62 0.0021 22.9 4.0 39 1-43 9-47 (189)
47 2ovw_A Endoglucanase I; glycos 28.4 51 0.0017 29.1 3.9 40 90-129 263-313 (411)
48 4fus_A RTX toxins and related 28.1 13 0.00044 34.7 0.1 15 100-114 603-617 (695)
49 2kw2_A Specialized acyl carrie 27.5 1.2E+02 0.0041 20.2 5.1 40 5-44 4-57 (101)
50 3ejb_A Acyl carrier protein; p 27.1 1E+02 0.0036 20.5 4.7 24 21-44 53-76 (97)
51 1eg1_A Endoglucanase I; mutati 27.0 47 0.0016 28.9 3.4 32 90-121 246-283 (371)
52 4i4d_A Peptide synthetase NRPS 26.8 1.3E+02 0.0045 19.4 5.3 39 6-44 18-67 (93)
53 2liu_A CURA; holo state, trans 26.5 1.3E+02 0.0043 19.1 5.0 39 6-44 23-74 (99)
54 3o39_A Periplasmic protein rel 24.2 38 0.0013 24.2 2.0 20 120-139 12-31 (108)
55 2afd_A Protein ASL1650; twiste 23.5 1.4E+02 0.0047 18.4 5.2 40 5-44 15-67 (88)
56 3nnr_A Transcriptional regulat 23.2 54 0.0018 23.6 2.7 39 1-43 2-40 (228)
57 2hwk_A Helicase NSP2; rossman 23.2 22 0.00075 30.4 0.6 13 122-134 22-34 (320)
58 2v2f_A Penicillin binding prot 22.9 31 0.0011 18.1 1.0 19 74-93 7-25 (26)
59 2xsp_A Cellulose 1,4-beta-cell 22.5 57 0.002 29.0 3.2 40 90-129 283-336 (440)
60 2qfm_A Spermine synthase; sper 21.9 1.2E+02 0.0042 25.8 5.1 39 79-118 42-81 (364)
61 3or1_C Sulfite reductase GAMA; 21.4 41 0.0014 24.1 1.7 20 117-136 32-52 (105)
62 3pfz_A Cellobiohydrolase 1 cat 20.9 65 0.0022 28.6 3.2 40 90-129 280-332 (437)
63 1sau_A Sulfite reductase, desu 20.6 43 0.0015 24.5 1.7 15 122-136 42-56 (115)
64 3p7m_A Malate dehydrogenase; p 20.3 3.5E+02 0.012 22.0 7.5 45 103-150 273-317 (321)
65 3rjs_A Dynein light chain moto 20.2 1.8E+02 0.0061 19.6 4.8 21 1-21 13-33 (89)
66 1zw0_A Type III secretion prot 20.2 1.1E+02 0.0038 20.4 3.5 23 127-149 37-59 (66)
67 2l22_A Mupirocin didomain acyl 20.2 1.9E+02 0.0064 21.5 5.4 41 4-44 26-79 (212)
No 1
>1pcf_A P15, transcriptional coactivator PC4; transcriptional cofactor, ssDNA binding, nuclear protein; 1.74A {Homo sapiens} SCOP: d.18.1.1 PDB: 2c62_A 2phe_A
Probab=99.97 E-value=2.5e-31 Score=182.83 Aligned_cols=64 Identities=50% Similarity=0.871 Sum_probs=61.8
Q ss_pred EEEeCCceeEEEeeeCCceeEeeeeEE-ecCCcccCCCcccccCHHHHHHHHHhHHHHHHHHHHh
Q 031792 85 ICQLNKKRRVTIQDFKGKTLVSIREYY-TKGGKELPSAKGISLTEEQWSALRKNVSAIDTAVKKM 148 (153)
Q Consensus 85 ~~~Ls~~rrvtV~~fkG~~~VdIRE~Y-~kdG~~~P~kKGIsLt~eqw~~l~~~~~~I~~ai~~l 148 (153)
+|+||++|||+|++|||++|||||||| .+||+++|||||||||++||+.|++++++|++||++|
T Consensus 2 ~~~ls~~rrvtv~~fkG~~~VdIRe~Y~~kdG~~~PgkKGIsL~~~qw~~l~~~~~~I~~ai~~~ 66 (66)
T 1pcf_A 2 MFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 66 (66)
T ss_dssp EEEEETTEEEEEEEETTEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHC
T ss_pred eEECCCCeEEEEEEeCCCEEEEEEEEEECCCCcCCCCccccccCHHHHHHHHHHHHHHHHHHHhC
Confidence 599999999999999999999999999 6799999999999999999999999999999999875
No 2
>4agh_A Mosub1, transcription cofactor; ssDNA binding protein; 1.79A {Magnaporthe oryzae}
Probab=99.96 E-value=4e-30 Score=202.32 Aligned_cols=78 Identities=37% Similarity=0.651 Sum_probs=72.5
Q ss_pred CCcccCCCCCeEEEEeCCceeEEEeeeCCceeEeeeeEEecCCcccCCCcccccCHHHHHHHHHhHHHHHHHHHHhhcc
Q 031792 73 DNAEYDDEGNLIICQLNKKRRVTIQDFKGKTLVSIREYYTKGGKELPSAKGISLTEEQWSALRKNVSAIDTAVKKMQSR 151 (153)
Q Consensus 73 ~~~~~d~~gd~~~~~Ls~~rrvtV~~fkG~~~VdIRE~Y~kdG~~~P~kKGIsLt~eqw~~l~~~~~~I~~ai~~l~~~ 151 (153)
+....|++|+.+ |+||++|||+|++|||++||||||||+++|+|+|||||||||++||..|+++++.|++||+.++..
T Consensus 37 ~~~~~d~~g~~~-~~Ls~~rrvtV~~fkG~~~vdIREyY~k~G~~~PgkKGISLs~~qw~~L~~~~~~I~~ai~~~g~~ 114 (158)
T 4agh_A 37 GGSQVDAEGNPF-WEISDKRRVGISQFKKMDFINIREYYEAGGEMKPGKKGIGLTVDQYTAFLKAIPAINAELRSRGHD 114 (158)
T ss_dssp -CCEECTTSCEE-EESSSSEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCccCCCCCEe-EEcCCCcEEEEEeeCCCEEEEeEeEEcCCCcCCCcccceecCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 334568888886 999999999999999999999999999999999999999999999999999999999999999864
No 3
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=99.44 E-value=8.3e-14 Score=96.16 Aligned_cols=53 Identities=28% Similarity=0.456 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHhhhcCCcchhhHHHHHHHHhHHc-CCCCCChhHHHHHhhhhhh
Q 031792 3 AETKAKIEGTVREILVKSDMTETTEFQIRKQASEKM-GLDLSQPEYKAFVRHKSKE 57 (153)
Q Consensus 3 ~~sk~~i~~~V~eILk~aDl~t~Te~~vR~~l~~~l-gvdLs~~~~K~~Vr~~i~~ 57 (153)
.||..+|.+.|++||++|||+++|.++||++|+++| |+|||+ ||+||+++|..
T Consensus 11 ~Psd~ei~~~I~~IL~~aDL~tvT~K~VR~~Le~~~pg~dLs~--kK~~I~~~I~~ 64 (70)
T 1q1v_A 11 PPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLTE--RKDFIKTTVKE 64 (70)
T ss_dssp CCCHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHCSSSCCSH--HHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHccCCCChH--HHHHHHHHHHH
Confidence 588999999999999999999999999999999999 999997 99999999854
No 4
>4g06_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: DT; 2.90A {Streptococcus pneumoniae}
Probab=93.88 E-value=0.15 Score=35.68 Aligned_cols=45 Identities=20% Similarity=0.405 Sum_probs=34.8
Q ss_pred eeEEEeeeCCce-eEeeeeEEecCCcccCCCcccccCHHHHHHHHHhHH
Q 031792 92 RRVTIQDFKGKT-LVSIREYYTKGGKELPSAKGISLTEEQWSALRKNVS 139 (153)
Q Consensus 92 rrvtV~~fkG~~-~VdIRE~Y~kdG~~~P~kKGIsLt~eqw~~l~~~~~ 139 (153)
+-+..-.|+|.. -.|||.|=.+. .+. .|||+||.++...|++.+.
T Consensus 32 KELNlVSWN~~~pKyDIR~W~pdh--~kM-gKGITLT~eE~~~L~~~L~ 77 (79)
T 4g06_A 32 KEINRVSFNGAPAKFDIRAWSPDH--TKM-GKGITLSNEEFQTMVDAFK 77 (79)
T ss_dssp EEEEEEEETTCCCEEEEEEECTTS--SCB-CCCEEECHHHHHHHHHHHH
T ss_pred EEEEEEEeCCCCCCccccccCccc--ccc-cCccccCHHHHHHHHHHHc
Confidence 467778898765 89999985443 233 3999999999999998764
No 5
>2l3a_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Streptococcus pneumoniae} PDB: 3obh_A*
Probab=93.43 E-value=0.19 Score=35.39 Aligned_cols=46 Identities=22% Similarity=0.434 Sum_probs=34.1
Q ss_pred ceeEEEeeeCCc-eeEeeeeEEecCCcccCCCcccccCHHHHHHHHHhHH
Q 031792 91 KRRVTIQDFKGK-TLVSIREYYTKGGKELPSAKGISLTEEQWSALRKNVS 139 (153)
Q Consensus 91 ~rrvtV~~fkG~-~~VdIRE~Y~kdG~~~P~kKGIsLt~eqw~~l~~~~~ 139 (153)
.+-+..-.|+|. +-.|||.|=-+.-++ .|||+||.++...|++.+.
T Consensus 26 ~KELNlVSWNg~~pKyDIR~Wspdh~kM---GKGITLT~eE~~~L~~~L~ 72 (82)
T 2l3a_A 26 TKEINRVSFNGAPAKFDIRAWSPDHTKM---GKGITLSNEEFQTMVDAFK 72 (82)
T ss_dssp EEEEEEEEESSSCEEEEEEEECSTTCCC---CCCEEECHHHHHHHHHHHH
T ss_pred eEEEEEEeECCCCCCccccccCcchhhc---cCcccccHHHHHHHHHHHH
Confidence 356777788876 489999984332122 4999999999999988664
No 6
>3pm7_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.00A {Enterococcus faecalis}
Probab=93.37 E-value=0.1 Score=36.67 Aligned_cols=46 Identities=26% Similarity=0.547 Sum_probs=34.6
Q ss_pred eeEEEeeeCCce-eEeeeeEEecCCcccCCCcccccCHHHHHHHHHhHHH
Q 031792 92 RRVTIQDFKGKT-LVSIREYYTKGGKELPSAKGISLTEEQWSALRKNVSA 140 (153)
Q Consensus 92 rrvtV~~fkG~~-~VdIRE~Y~kdG~~~P~kKGIsLt~eqw~~l~~~~~~ 140 (153)
+-+..-.|+|.. -.|||.|=.+. .+. .|||+||.++...|++.+..
T Consensus 25 KELNlVSWN~~~pKyDIR~W~pdh--~kM-gKGITLT~eE~~~Lk~~L~~ 71 (80)
T 3pm7_A 25 KELNLISWNGRPPKFDLREWAPDH--EKM-GKGITLTNEEFAELSKTIKS 71 (80)
T ss_dssp EEEEEECGGGCCCEEEEEEECTTS--SSE-EEEEEECHHHHHHHHHHHHH
T ss_pred EEEEEEEECCCCCCccccccCcch--hhc-cCcceeCHHHHHHHHHHHHH
Confidence 467777888764 89999985432 133 38999999999999987653
No 7
>2ltd_A Uncharacterized protein YDBC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Lactococcus lactis subsp}
Probab=85.81 E-value=0.16 Score=35.70 Aligned_cols=45 Identities=24% Similarity=0.418 Sum_probs=32.3
Q ss_pred eeEEEeeeCCc-eeEeeeeEEecCCcccCCCcccccCHHHHHHHHHhHH
Q 031792 92 RRVTIQDFKGK-TLVSIREYYTKGGKELPSAKGISLTEEQWSALRKNVS 139 (153)
Q Consensus 92 rrvtV~~fkG~-~~VdIRE~Y~kdG~~~P~kKGIsLt~eqw~~l~~~~~ 139 (153)
+-+..-.|+|. +-.|||.|--+.-++ .|||+||.++...|++.+.
T Consensus 25 KELNlVSWNg~~pKyDIR~Wspdh~kM---GKGITLT~eE~~~L~~~Ln 70 (80)
T 2ltd_A 25 KELNRVSWNDAEPKYDIRTWSPDHEKM---GKGITLSEEEFGVLLKELG 70 (80)
Confidence 34556667765 489999984432122 4999999999999988664
No 8
>1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution structure, dynamics, ACP, biosynthetic protein; NMR {Streptomyces rimosus} SCOP: a.28.1.1
Probab=73.52 E-value=4.9 Score=27.21 Aligned_cols=45 Identities=13% Similarity=0.128 Sum_probs=36.7
Q ss_pred CChHHHHHHHHHHHHhhhcC-----------------CcchhhHHHHHHHHhHHcCCCCCCh
Q 031792 1 MKAETKAKIEGTVREILVKS-----------------DMTETTEFQIRKQASEKMGLDLSQP 45 (153)
Q Consensus 1 M~~~sk~~i~~~V~eILk~a-----------------Dl~t~Te~~vR~~l~~~lgvdLs~~ 45 (153)
|.+.+..+|...|.++|... .++++..-.+...++++||+.++..
T Consensus 1 M~~~t~~~l~~ii~~~l~~~~~~~~~~i~~d~~~~dlG~DSL~~vel~~~le~~fgi~i~~~ 62 (95)
T 1nq4_A 1 MTLLTLSDLLTLLRECAGEEESIDLGGDVEDVAFDALGYDSLALLNTVGRIERDYGVQLGDD 62 (95)
T ss_dssp CCCCCHHHHHHHHHHHHTCSSTTCSCSCCSSSCHHHHTCCSHHHHHHHHHHHHHTCCCSCTT
T ss_pred CccccHHHHHHHHHHHHccccccccccCCCCCChhhhCCCHHHHHHHHHHHHHHHCCccCHH
Confidence 77777888999999988732 2456788899999999999999973
No 9
>2cg5_B Fatty acid synthase; transferase-hydrolase complex, transferase/hydrolase (comple fatty acid biosynthesis, phosphopantetheine transferase; HET: COA; 2.7A {Homo sapiens} PDB: 2png_A
Probab=73.25 E-value=2.8 Score=29.21 Aligned_cols=39 Identities=21% Similarity=0.294 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhhcCC--------------cchhhHHHHHHHHhHHcCCCCCC
Q 031792 6 KAKIEGTVREILVKSD--------------MTETTEFQIRKQASEKMGLDLSQ 44 (153)
Q Consensus 6 k~~i~~~V~eILk~aD--------------l~t~Te~~vR~~l~~~lgvdLs~ 44 (153)
+..|...|..||.-.+ |+++..-.+|..|+..||+.|+.
T Consensus 8 ~~~v~~~va~iLg~~~~~~I~~~~~l~dLG~DSL~aVELr~~Le~~fgi~lp~ 60 (91)
T 2cg5_B 8 QRDLVEAVAHILGIRDLAAVNLDSSLADLGLDALMSVEVRQTLERELNLVLSV 60 (91)
T ss_dssp CTTHHHHHHHHTTCCSCTTSCTTSBTTTTTCCHHHHHHHHHHHHHHHCCCCCH
T ss_pred HHHHHHHHHHHHCCCchhhCCCCCCHHHhCCcchHHHHHHHHHHHHHCCCCCH
Confidence 3568888889987433 67899999999999999999997
No 10
>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.78 E-value=5.2 Score=27.01 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=32.9
Q ss_pred CChHHHHHHHHHHHHhhhc------------------CCcchhhHHHHHHHHhHHcCCCCCC
Q 031792 1 MKAETKAKIEGTVREILVK------------------SDMTETTEFQIRKQASEKMGLDLSQ 44 (153)
Q Consensus 1 M~~~sk~~i~~~V~eILk~------------------aDl~t~Te~~vR~~l~~~lgvdLs~ 44 (153)
|.+-++.+|...|.+||.+ -.++++..-.+...++++||++++.
T Consensus 8 m~~m~~~~i~~~l~~~l~~~l~~~~~~i~~d~~l~~dlG~DSL~~vel~~~le~~fgi~i~~ 69 (99)
T 2dnw_A 8 MPPLTLEGIQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPD 69 (99)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTSCTTTCCTTCCCCCCCCCCHHHHHHHHHHHHHHTTCCCCH
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCHhhCCCCCchhhhcCCCHHHHHHHHHHHHHHHCCCCCH
Confidence 5555677777777777653 1135677889999999999999986
No 11
>3ce7_A Specific mitochodrial acyl carrier protein; malaria, mitochondrial, ACP, fatty acid biosynthesis, lipid synthesis, phosphopantetheine; 1.64A {Toxoplasma}
Probab=67.03 E-value=8.1 Score=27.01 Aligned_cols=42 Identities=5% Similarity=-0.022 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhhhcC----------------------CcchhhHHHHHHHHhHHcCCCCCCh
Q 031792 4 ETKAKIEGTVREILVKS----------------------DMTETTEFQIRKQASEKMGLDLSQP 45 (153)
Q Consensus 4 ~sk~~i~~~V~eILk~a----------------------Dl~t~Te~~vR~~l~~~lgvdLs~~ 45 (153)
.++.+|...|++||.+. .++++..-.+--.++++||+.++..
T Consensus 15 ~~~~~i~~~i~~il~e~l~~~~~i~~d~~l~~~~~~~dLglDSL~~veli~~lE~~fgi~i~~~ 78 (107)
T 3ce7_A 15 TDINAVTNYIVGMCQKFLQKGEKVTPSSKLEELRTREDRLWDCLDTVEFVLDVEEIFDVTVPDE 78 (107)
T ss_dssp TCHHHHHHHHHHHHHTTBCTTCCCCTTSCGGGSBBTTSSBCCHHHHHHHHHHHHHHHTCCCCHH
T ss_pred CCHHHHHHHHHHHHHHHhCCccccCCCCcccccCcccccCCCHHHHHHHHHHHHHHHCCCCCHH
Confidence 46677777777777643 2567888899999999999999873
No 12
>2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum}
Probab=64.98 E-value=17 Score=23.52 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhh-----------------hcCCcchhhHHHHHHHHhHHcCCCCCC
Q 031792 4 ETKAKIEGTVREIL-----------------VKSDMTETTEFQIRKQASEKMGLDLSQ 44 (153)
Q Consensus 4 ~sk~~i~~~V~eIL-----------------k~aDl~t~Te~~vR~~l~~~lgvdLs~ 44 (153)
.....|.+.+.++| .+-.++++..-.+...++++||++++.
T Consensus 8 ~i~~~v~~~i~~~l~~~~~~~~~i~~d~~l~~dlglDSl~~vel~~~lE~~fgi~i~~ 65 (88)
T 2l4b_A 8 EIKAQVMESVIGCLKLNDEQKQILSGTTNLAKDFNLDSLDFVDLIMSLEERFSLEISD 65 (88)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHSCCTTSCTTTTTTCCHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHHHhhCCCCHhhCCCCCchhhccCCcHHHHHHHHHHHHHHHCCCcCH
Confidence 45556666677766 223346788889999999999999987
No 13
>1or5_A Acyl carrier protein; ACP, biosynthesis, frenolicin, holo, polyketide synthase, PKS, biosynthetic protein; NMR {Streptomyces roseofulvus} SCOP: a.28.1.1
Probab=62.70 E-value=9.5 Score=24.43 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=33.3
Q ss_pred CChHHHHHHHHHHHHhhhcC---Cc-------------chhhHHHHHHHHhHHcCCCCCC
Q 031792 1 MKAETKAKIEGTVREILVKS---DM-------------TETTEFQIRKQASEKMGLDLSQ 44 (153)
Q Consensus 1 M~~~sk~~i~~~V~eILk~a---Dl-------------~t~Te~~vR~~l~~~lgvdLs~ 44 (153)
|.+.....|.+.+.++|.-. ++ +++..-.++..++++||++++.
T Consensus 1 M~~~~~~~l~~~l~~~l~~~~~~~i~~~~~~~~~dlG~DSL~~vel~~~le~~fgi~i~~ 60 (83)
T 1or5_A 1 MSALTVDDLKKLLAETAGEDDSVDLAGELDTPFVDLGYDSLALLETAAVLQQRYGIALTD 60 (83)
T ss_dssp -CCSCHHHHHHHHHHHSCCCSSCCGGGCSSSCHHHHSCCHHHHHHHHHHHHTTSCCCCSH
T ss_pred CchHHHHHHHHHHHHHhCCCcccccCCCCCCcHHHhCCCHHHHHHHHHHHHHHHCCccCH
Confidence 66667778888888887622 33 3566778999999999999986
No 14
>3dmc_A NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, unknow function; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.17.4.10
Probab=59.09 E-value=16 Score=25.74 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=20.9
Q ss_pred eEEEeeeCCceeEeeeeEEecCCc
Q 031792 93 RVTIQDFKGKTLVSIREYYTKGGK 116 (153)
Q Consensus 93 rvtV~~fkG~~~VdIRE~Y~kdG~ 116 (153)
.+.+-++++-.-+.+|+||..+|+
T Consensus 109 ~~~~f~v~dGkI~~~r~Y~d~~~~ 132 (134)
T 3dmc_A 109 VAVSFDVRGDKICSYREYFGSDGK 132 (134)
T ss_dssp EEEEEEEETTEEEEEEEEECSCSB
T ss_pred EEEEEEEECCEEEEEEEEECCCCC
Confidence 477778899999999999999886
No 15
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}
Probab=58.12 E-value=29 Score=21.51 Aligned_cols=41 Identities=15% Similarity=0.255 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhhhc--------------CCcchhhHHHHHHHHhHHcCCCCCC
Q 031792 4 ETKAKIEGTVREILVK--------------SDMTETTEFQIRKQASEKMGLDLSQ 44 (153)
Q Consensus 4 ~sk~~i~~~V~eILk~--------------aDl~t~Te~~vR~~l~~~lgvdLs~ 44 (153)
+....|.+.+.++|.- --++++..-.+...++++||+.++.
T Consensus 5 ~i~~~l~~~i~~~l~~~~~~i~~~~~l~~~lG~DSl~~~~l~~~le~~fgi~i~~ 59 (80)
T 1x3o_A 5 EIFEKVKAVIADKLQVEPEKVTLEARFIEDLGADSLDTVELIMGLEDEFGLEISD 59 (80)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHCCCCCH
T ss_pred HHHHHHHHHHHHHhCCCHHHCCCcCcHHhhcCccHHHHHHHHHHHHHHHCCCcCH
Confidence 3445566666666641 1246778889999999999999986
No 16
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=57.03 E-value=24 Score=22.20 Aligned_cols=41 Identities=7% Similarity=0.191 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhhh--------------cCCcchhhHHHHHHHHhHHcCCCCCC
Q 031792 4 ETKAKIEGTVREILV--------------KSDMTETTEFQIRKQASEKMGLDLSQ 44 (153)
Q Consensus 4 ~sk~~i~~~V~eILk--------------~aDl~t~Te~~vR~~l~~~lgvdLs~ 44 (153)
.....|.+.+.++|. +-.++++..-.+...++++||++++.
T Consensus 7 ~i~~~l~~~l~~~l~~~~~~i~~~~~l~~dlG~DSl~~vel~~~le~~fgi~i~~ 61 (81)
T 1f80_D 7 DTLERVTKIIVDRLGVDEADVKLEASFKEDLGADXLDVVELVMELEDEFDMEISD 61 (81)
T ss_dssp HHHHHHHHHHHHHSSCCSSCCCTTCBHHHHSCCCHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHHHCCCHHhCCCccchHHHcCCcHHHHHHHHHHHHHHhCCccCH
Confidence 344556666666653 12245677778999999999999986
No 17
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=55.09 E-value=33 Score=21.80 Aligned_cols=24 Identities=4% Similarity=0.052 Sum_probs=19.6
Q ss_pred cchhhHHHHHHHHhHHcCCCCCCh
Q 031792 22 MTETTEFQIRKQASEKMGLDLSQP 45 (153)
Q Consensus 22 l~t~Te~~vR~~l~~~lgvdLs~~ 45 (153)
++++..-.+...++++||+.++..
T Consensus 41 ~DSl~~vel~~~le~~fgi~i~~~ 64 (84)
T 2kwl_A 41 ADSLDIYELLYLLEEAFDDKIPEN 64 (84)
T ss_dssp SCHHHHHHHHHHHHHHHTCCTTTT
T ss_pred CCHHHHHHHHHHHHHHHCCCcCHH
Confidence 455666789999999999999873
No 18
>1fh1_A NODF, nodulation protein F; ROOT nodulation factor, protein backbone fold, lipid binding protein; NMR {Rhizobium leguminosarum} SCOP: i.11.1.1
Probab=52.62 E-value=4.9 Score=26.87 Aligned_cols=43 Identities=7% Similarity=0.141 Sum_probs=20.1
Q ss_pred CChHHHHHHHHHHHHhhhc-------CC--------------cchhhHHHHHHHHhHHcCCCCC
Q 031792 1 MKAETKAKIEGTVREILVK-------SD--------------MTETTEFQIRKQASEKMGLDLS 43 (153)
Q Consensus 1 M~~~sk~~i~~~V~eILk~-------aD--------------l~t~Te~~vR~~l~~~lgvdLs 43 (153)
|++..+.+|.+.|.++|.. .+ ++++..-.+...++++||+.++
T Consensus 1 M~~~i~~~i~~ii~~~~~~~~~~~~~~~~~~i~~d~~l~dlg~DSl~~vel~~~lE~~fgi~i~ 64 (92)
T 1fh1_A 1 MADQLTLEIISAINKLVKAENGERTSVALGEITTDTELTSLGIDSLGLADVLWDLEQLYGIKIE 64 (92)
T ss_dssp ----CHHHHHHHHHHHC----------------------------CTTTTHHHHHHHC------
T ss_pred CchHHHHHHHHHHHHHHHhccccccCCCHhhCCCCCCHhhcCCChHHHHHHHHHHHHHhCCccC
Confidence 7777888888888888872 12 2334445567778888888887
No 19
>2prv_A Uncharacterized protein YOBK; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.30A {Bacillus subtilis} SCOP: d.369.1.1
Probab=51.83 E-value=16 Score=26.55 Aligned_cols=47 Identities=26% Similarity=0.331 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhhcCCcch-hhHHHHHHHHhHHcCCCCCChhHHHHHhhh
Q 031792 6 KAKIEGTVREILVKSDMTE-TTEFQIRKQASEKMGLDLSQPEYKAFVRHK 54 (153)
Q Consensus 6 k~~i~~~V~eILk~aDl~t-~Te~~vR~~l~~~lgvdLs~~~~K~~Vr~~ 54 (153)
..+|+.-+..+........ +|+..| +.+++.||+.|.. +||.|++..
T Consensus 4 ~~~i~~li~~~~~~~~~~~~~see~I-~~~E~~Lgi~lP~-dYk~fLk~~ 51 (153)
T 2prv_A 4 YSKVENFINENKQNAIFTEGASHENI-GRIEENLQCDLPN-SYKWFLEKY 51 (153)
T ss_dssp HHHHHHHHHHHGGGCEECCCCCHHHH-HHHHHHHTSCCCH-HHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccCCCCCHHHH-HHHHHHHCCCCCH-HHHHHHHHh
Confidence 3456665665554444443 555555 4579999999985 799999877
No 20
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=50.04 E-value=43 Score=20.92 Aligned_cols=23 Identities=9% Similarity=0.235 Sum_probs=19.1
Q ss_pred chhhHHHHHHHHhHHcCCCCCCh
Q 031792 23 TETTEFQIRKQASEKMGLDLSQP 45 (153)
Q Consensus 23 ~t~Te~~vR~~l~~~lgvdLs~~ 45 (153)
+++..-.+...++++||+.++..
T Consensus 39 DSl~~~el~~~le~~fgi~i~~~ 61 (81)
T 2lol_A 39 DSLDTVELMMAIEVEYGIDIPDD 61 (81)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGG
T ss_pred cHHHHHHHHHHHHHHHCCCCCHH
Confidence 45666789999999999999873
No 21
>2icg_A LIN2918 protein; hypothetical protein, structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; 1.65A {Listeria innocua} SCOP: d.369.1.1
Probab=49.38 E-value=11 Score=27.46 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=24.5
Q ss_pred CCcc-hhhHHHHHHHHhHHcCCCCCChhHHHHHhhh
Q 031792 20 SDMT-ETTEFQIRKQASEKMGLDLSQPEYKAFVRHK 54 (153)
Q Consensus 20 aDl~-t~Te~~vR~~l~~~lgvdLs~~~~K~~Vr~~ 54 (153)
.++. .+|+..| +.+++.||+.|.. +||.|++..
T Consensus 21 ~~~~~~~s~~~I-~~~E~~Lgi~lP~-~Yk~fL~~~ 54 (160)
T 2icg_A 21 FHASGTGTPELI-KIYQDALGNEFPE-TYKLFLEKY 54 (160)
T ss_dssp CBCCCCCCHHHH-HHHHHHHTCCCCH-HHHHHHHHT
T ss_pred cccCCCCCHHHH-HHHHHHhCCCCCH-HHHHHHHHh
Confidence 3443 4555555 4579999999985 799999986
No 22
>1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynt lipid transport; HET: PSR; 1.20A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ny7_B* 2fhs_C 1l0h_A* 1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A
Probab=48.02 E-value=39 Score=20.97 Aligned_cols=40 Identities=8% Similarity=0.160 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhhh--------------cCCcchhhHHHHHHHHhHHcCCCCCC
Q 031792 5 TKAKIEGTVREILV--------------KSDMTETTEFQIRKQASEKMGLDLSQ 44 (153)
Q Consensus 5 sk~~i~~~V~eILk--------------~aDl~t~Te~~vR~~l~~~lgvdLs~ 44 (153)
....|.+.+.++|. +--++++..-.+...++++||++++.
T Consensus 4 i~~~l~~~~~~~l~~~~~~i~~~~~l~~dlG~DSl~~~el~~~le~~fgi~i~~ 57 (78)
T 1l0i_A 4 IEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPD 57 (78)
T ss_dssp HHHHHHHHHHHHHTCCGGGCCTTCBTTTTSCCCHHHHHHHHHHHHHHHTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHCCCCcchhhhcCCCHHHHHHHHHHHHHHhCCCCCH
Confidence 34566667666663 22246778889999999999999986
No 23
>1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier protein, solution STR antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A*
Probab=48.01 E-value=18 Score=23.22 Aligned_cols=45 Identities=9% Similarity=0.149 Sum_probs=34.1
Q ss_pred CC-hHHHHHHHHHHHHhhhcC-----------------CcchhhHHHHHHHHhHHcCCCCCCh
Q 031792 1 MK-AETKAKIEGTVREILVKS-----------------DMTETTEFQIRKQASEKMGLDLSQP 45 (153)
Q Consensus 1 M~-~~sk~~i~~~V~eILk~a-----------------Dl~t~Te~~vR~~l~~~lgvdLs~~ 45 (153)
|+ +.+..+|.+.+.++|.-. .++++..-.++..++++||+.++..
T Consensus 1 M~~~~~~~~l~~il~~~l~~~~~~~~~~i~~~~~l~dlG~DSL~~vel~~~le~~fgi~i~~~ 63 (86)
T 1af8_A 1 MATLLTTDDLRRALVECAGETDGTDLSGDFLDLRFEDIGYDSLALMETAARLESRYGVSIPDD 63 (86)
T ss_dssp CCCSSCHHHHHHHHHTTCCCCSCCCTTTCSSTTSTTTTTCCTTTHHHHHHHHTTTTCSCCCTT
T ss_pred CchHHHHHHHHHHHHHHhCCCcccccccCCCCCChhhcCCCHHHHHHHHHHHHHHHCCCcCHH
Confidence 55 556777888888877521 2456778899999999999999873
No 24
>3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus}
Probab=47.42 E-value=7 Score=33.40 Aligned_cols=14 Identities=43% Similarity=0.885 Sum_probs=12.7
Q ss_pred cccccCHHHHHHHH
Q 031792 122 KGISLTEEQWSALR 135 (153)
Q Consensus 122 KGIsLt~eqw~~l~ 135 (153)
-||+||.+||+.|.
T Consensus 23 AGI~lT~~qW~~i~ 36 (324)
T 3trk_A 23 AGIKLNDRQWSQII 36 (324)
T ss_dssp TTCCCCHHHHHHHC
T ss_pred cCccccHHHHHHhh
Confidence 59999999999984
No 25
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=46.35 E-value=51 Score=20.48 Aligned_cols=23 Identities=9% Similarity=0.263 Sum_probs=19.6
Q ss_pred cchhhHHHHHHHHhHHcCCCCCC
Q 031792 22 MTETTEFQIRKQASEKMGLDLSQ 44 (153)
Q Consensus 22 l~t~Te~~vR~~l~~~lgvdLs~ 44 (153)
++++..-.+...++++||++++.
T Consensus 39 ~DSl~~~~l~~~le~~fgi~i~~ 61 (82)
T 2cnr_A 39 VDSLSMVEVVVAAEERFDVKIPD 61 (82)
T ss_dssp CCHHHHHHHHHHHHGGGTBCCCG
T ss_pred CChHHHHHHHHHHHHHhCCCCCH
Confidence 35677779999999999999987
No 26
>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty acid biosynthesis, lipid synthesis, phosphopantethein transit peptide; 1.90A {Toxoplasma gondii}
Probab=43.96 E-value=57 Score=20.55 Aligned_cols=23 Identities=13% Similarity=0.273 Sum_probs=19.5
Q ss_pred cchhhHHHHHHHHhHHcCCCCCC
Q 031792 22 MTETTEFQIRKQASEKMGLDLSQ 44 (153)
Q Consensus 22 l~t~Te~~vR~~l~~~lgvdLs~ 44 (153)
++++..-.+...++++||+.++.
T Consensus 39 ~DSl~~vel~~~le~~fgi~i~~ 61 (82)
T 2qnw_A 39 ADSLDSVELVMAFEEKFGVSIPD 61 (82)
T ss_dssp CCHHHHHHHHHHHHHHHTCCCCH
T ss_pred CcHHHHHHHHHHHHHHHCCcCCH
Confidence 45677778999999999999986
No 27
>2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown function, ATC, S genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens} SCOP: a.28.1.1
Probab=43.15 E-value=21 Score=24.60 Aligned_cols=23 Identities=9% Similarity=0.248 Sum_probs=19.8
Q ss_pred cchhhHHHHHHHHhHHcCCCCCC
Q 031792 22 MTETTEFQIRKQASEKMGLDLSQ 44 (153)
Q Consensus 22 l~t~Te~~vR~~l~~~lgvdLs~ 44 (153)
++++..-.+...+++.||+.++.
T Consensus 55 lDSL~~veLv~~lE~~fgI~i~~ 77 (105)
T 2jq4_A 55 LSSFASVQLMLGIEEAFDIEFPD 77 (105)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCCH
T ss_pred CCHHHHHHHHHHHHHHHCCCcCH
Confidence 35677888999999999999987
No 28
>2it9_A Hypothetical protein; structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; HET: MSE PGE; 1.80A {Prochlorococcus marinus} SCOP: d.18.1.3
Probab=40.51 E-value=30 Score=25.92 Aligned_cols=30 Identities=23% Similarity=0.436 Sum_probs=27.8
Q ss_pred cccCHHHHHHHHHhHHHHHHHHHHhhcccC
Q 031792 124 ISLTEEQWSALRKNVSAIDTAVKKMQSRIM 153 (153)
Q Consensus 124 IsLt~eqw~~l~~~~~~I~~ai~~l~~~~~ 153 (153)
|-||..+|+.|+..+..+.+.+..|.+.+|
T Consensus 32 iELTe~E~~~f~~Ll~qL~~~~~~i~~eLM 61 (127)
T 2it9_A 32 IELDKSEWKILVEVVMELCDQYKLVKEQLM 61 (127)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred eeecHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999887765
No 29
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1
Probab=39.13 E-value=55 Score=22.35 Aligned_cols=24 Identities=4% Similarity=0.127 Sum_probs=21.0
Q ss_pred cchhhHHHHHHHHhHHcCCCCCCh
Q 031792 22 MTETTEFQIRKQASEKMGLDLSQP 45 (153)
Q Consensus 22 l~t~Te~~vR~~l~~~lgvdLs~~ 45 (153)
++++..-.++..++++||++++..
T Consensus 48 lDSL~~veL~~~LE~~fgi~i~~~ 71 (100)
T 1vku_A 48 FDSIDVIDLVMFFEDEFALRIEDE 71 (100)
T ss_dssp CCHHHHHHHHHHHHHHHTCCCCHH
T ss_pred CchHHHHHHHHHHHHHHCCCCCHH
Confidence 567888899999999999999873
No 30
>1ojj_A Endoglucanase I; hydrolase, cellulose degradation, glycosynthase; HET: BGC GAL GLC NAG; 1.4A {Humicola insolens} SCOP: b.29.1.10 PDB: 1oji_A* 1ojk_A* 1dym_A* 1a39_A* 2a39_A*
Probab=38.47 E-value=32 Score=30.33 Aligned_cols=40 Identities=25% Similarity=0.466 Sum_probs=28.4
Q ss_pred CceeEEEeeeCC---ceeEeeeeEEecCCcccCCC----ccc----ccCHH
Q 031792 90 KKRRVTIQDFKG---KTLVSIREYYTKGGKELPSA----KGI----SLTEE 129 (153)
Q Consensus 90 ~~rrvtV~~fkG---~~~VdIRE~Y~kdG~~~P~k----KGI----sLt~e 129 (153)
.++.-.|..|-+ -.|..||-||..+|+..|.. .|+ |||.+
T Consensus 263 ~k~fTVVTQFit~~~G~L~EIrR~YVQ~GkvI~n~~~~~~g~~~~nSItd~ 313 (402)
T 1ojj_A 263 LKPFTVVTQFLANRRGKLEKIHRFYVQDGKVIESFYTNKEGVPYTNMIDDE 313 (402)
T ss_dssp TSCEEEEEEEEECTTSCEEEEEEEEEETTEEECCCCCCCTTSCCCSSBCHH
T ss_pred CCCeEEEeeeecCCCCCcceeeEEEEECCEEEeCCCcccCCCCCCCccCHH
Confidence 444455666864 48999999999999876544 344 77764
No 31
>2nvn_A Hypothetical protein; structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; 2.50A {Synechococcus elongatus} SCOP: d.18.1.3
Probab=37.67 E-value=28 Score=25.86 Aligned_cols=30 Identities=13% Similarity=0.331 Sum_probs=27.6
Q ss_pred cccCHHHHHHHHHhHHHHHHHHHHhhcccC
Q 031792 124 ISLTEEQWSALRKNVSAIDTAVKKMQSRIM 153 (153)
Q Consensus 124 IsLt~eqw~~l~~~~~~I~~ai~~l~~~~~ 153 (153)
|-||..+|+.|+..+..+.+.+..|.+.+|
T Consensus 34 iELTe~E~~~f~~Ll~qL~~~~~~i~~eLM 63 (122)
T 2nvn_A 34 VELTAAEMADFCRLVQQLAETIAAIAPELM 63 (122)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHTSCCCSS
T ss_pred eeeCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999998887665
No 32
>2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics, NPPSFA, national proje protein structural and functional analyses; 1.30A {Aquifex aeolicus} PDB: 2eht_A
Probab=37.46 E-value=68 Score=19.46 Aligned_cols=23 Identities=9% Similarity=0.254 Sum_probs=20.5
Q ss_pred cchhhHHHHHHHHhHHcCCCCCC
Q 031792 22 MTETTEFQIRKQASEKMGLDLSQ 44 (153)
Q Consensus 22 l~t~Te~~vR~~l~~~lgvdLs~ 44 (153)
++++..-.++..++++||++++.
T Consensus 33 ~DSl~~~~l~~~le~~~gi~i~~ 55 (77)
T 2ehs_A 33 ADSLDVVELIMAFEEEFGIEIPD 55 (77)
T ss_dssp CCHHHHHHHHHHHHHHHTCCCCH
T ss_pred CCHHHHHHHHHHHHHHhCCccCH
Confidence 47788889999999999999986
No 33
>1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein; four-helix bundle, modular enzyme, domain, flexible region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB: 2gdw_A 2gdx_A 2gdy_A 2k2q_A
Probab=37.23 E-value=68 Score=21.01 Aligned_cols=41 Identities=12% Similarity=0.170 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhhhcC------C-----cchhhHHHHHHHHhHHcCCCCCC
Q 031792 4 ETKAKIEGTVREILVKS------D-----MTETTEFQIRKQASEKMGLDLSQ 44 (153)
Q Consensus 4 ~sk~~i~~~V~eILk~a------D-----l~t~Te~~vR~~l~~~lgvdLs~ 44 (153)
+..+.|.+.+.++|.-. | .+++..-.++..+++.||++++.
T Consensus 14 ~~e~~l~~i~~~vL~~~~i~~~~~Ff~lGgdSL~a~~l~~~l~~~~g~~l~~ 65 (91)
T 1dny_A 14 AVESKLAEIWERVLGVSGIGILDNFFQIGGHSLKAMAVAAQVHREYQVELPL 65 (91)
T ss_dssp HHHHHHHHHHHHHHTCSSCCSSCCTTSSCCSSHHHHHHHHHHHHHCCCCCCH
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCHHHcCCCHHHHHHHHHHHHHHHCCCCCH
Confidence 34556777777777632 2 46788999999999999999986
No 34
>3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid biosynthesis, L synthesis, transit peptide, biosynthetic protein; HET: PNS; 1.80A {Plasmodium falciparum} SCOP: a.28.1.0 PDB: 3gzl_A* 2fq0_A* 2fq2_A*
Probab=36.97 E-value=69 Score=20.15 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=20.1
Q ss_pred CcchhhHHHHHHHHhHHcCCCCCC
Q 031792 21 DMTETTEFQIRKQASEKMGLDLSQ 44 (153)
Q Consensus 21 Dl~t~Te~~vR~~l~~~lgvdLs~ 44 (153)
.++++..-.+...++++||+.++.
T Consensus 36 g~DSl~~vel~~~le~~fgi~i~~ 59 (81)
T 3gzm_A 36 GADSLDLVELIMALEEKFNVTISD 59 (81)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCCCH
T ss_pred CCCHHHHHHHHHHHHHHHCCCcCH
Confidence 445677778999999999999987
No 35
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*
Probab=34.23 E-value=80 Score=19.70 Aligned_cols=23 Identities=13% Similarity=0.323 Sum_probs=20.4
Q ss_pred cchhhHHHHHHHHhHHcCCCCCC
Q 031792 22 MTETTEFQIRKQASEKMGLDLSQ 44 (153)
Q Consensus 22 l~t~Te~~vR~~l~~~lgvdLs~ 44 (153)
++++..-.+...++++||++++.
T Consensus 36 ~DSl~~vel~~~le~~fgi~i~~ 58 (82)
T 2ava_A 36 ADSLDTVEIVMNLEEEFGINVDE 58 (82)
T ss_dssp TCCSCHHHHHHHHHHHTTCCCCG
T ss_pred CCHHHHHHHHHHHHHHHCCccCH
Confidence 46778889999999999999987
No 36
>2ju1_A Erythronolide synthase; carrier protein domain, modular polyketide synthase, alpha- helical bundle, acyltransferase; NMR {Saccharopolyspora erythraea} PDB: 2ju2_A
Probab=34.08 E-value=85 Score=20.05 Aligned_cols=39 Identities=13% Similarity=0.227 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhhcC-----C---------cchhhHHHHHHHHhHHcCCCCCC
Q 031792 6 KAKIEGTVREILVKS-----D---------MTETTEFQIRKQASEKMGLDLSQ 44 (153)
Q Consensus 6 k~~i~~~V~eILk~a-----D---------l~t~Te~~vR~~l~~~lgvdLs~ 44 (153)
...|...+.++|... + ++++..-.++..++..||++++.
T Consensus 22 ~~~l~~~~~~~l~~~~~~~i~~~~~f~~lG~DSL~a~~l~~~l~~~~g~~l~~ 74 (95)
T 2ju1_A 22 VRLVRTSTATVLGHDDPKAVRATTPFKELGFDSLAAVRLRNLLNAATGLRLPS 74 (95)
T ss_dssp HHHHHHHHHHHTTCCCGGGCCSSSCHHHHTCSSHHHHHHHHHHGGGTSSCCCT
T ss_pred HHHHHHHHHHHHCCCChhhCCCCCCHHHcCCcHHHHHHHHHHHHHHHCCCCCh
Confidence 344566666777621 1 56788889999999999999987
No 37
>2jro_A Uncharacterized protein; solution structure, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium; NMR {Shewanella oneidensis}
Probab=31.94 E-value=57 Score=22.44 Aligned_cols=45 Identities=11% Similarity=0.166 Sum_probs=29.9
Q ss_pred eCCceeEeeeeEEe-cCCcccCCCcccccCHHHHHHHHHhHHHHHHHHHHhhc
Q 031792 99 FKGKTLVSIREYYT-KGGKELPSAKGISLTEEQWSALRKNVSAIDTAVKKMQS 150 (153)
Q Consensus 99 fkG~~~VdIRE~Y~-kdG~~~P~kKGIsLt~eqw~~l~~~~~~I~~ai~~l~~ 150 (153)
|+|..||.=.==|+ +.|+.+|-+++ . ......+.+|+..|..|+.
T Consensus 20 F~Gri~I~g~G~FeFd~GkillP~~~----d---~~~~~~~sEIN~~I~~L~~ 65 (78)
T 2jro_A 20 LTGVIWVKDLGRLEFEKGRFLLPRKS----L---PKVKQAILELNELIEAQNH 65 (78)
T ss_dssp CSEEEEETTTEEEEEETTEECCCSSC----C---HHHHHHHHHHHHHHHHHHC
T ss_pred ccceEEEEecccEEEcCCEEeCCccc----c---HHHHHHHHHHHHHHHHHHH
Confidence 89999885444445 78987643331 2 2445567789999988875
No 38
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus}
Probab=31.65 E-value=89 Score=21.30 Aligned_cols=40 Identities=8% Similarity=0.145 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhhh--------------cCCcchhhHHHHHHHHhHHcCCCCCC
Q 031792 5 TKAKIEGTVREILV--------------KSDMTETTEFQIRKQASEKMGLDLSQ 44 (153)
Q Consensus 5 sk~~i~~~V~eILk--------------~aDl~t~Te~~vR~~l~~~lgvdLs~ 44 (153)
...+|.+.|.++|. +-.++++..-.+...++++||+.++.
T Consensus 27 i~~~l~~iiae~l~~~~~~I~~d~~l~~dLGlDSL~~veLi~~lE~~fgi~i~~ 80 (101)
T 4dxe_H 27 NFDKVKDIIVDRLGVDADKVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPD 80 (101)
T ss_dssp HHHHHHHHHHHTTCCCGGGCCTTCBTTTTSCCCHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHHCcChhhCCCCCcchhhcCCCcHHHHHHHHHHHHHHCCCCCH
Confidence 45566666666663 22456777889999999999999986
No 39
>1j3m_A The conserved hypothetical protein TT1751; X-RAY crystallography, structural genomics, riken structural genomics/proteomics initiative; 2.00A {Thermus thermophilus} SCOP: d.129.7.1
Probab=31.42 E-value=15 Score=26.05 Aligned_cols=39 Identities=21% Similarity=0.269 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhhhcCCcchhhHHHHHHHHhHHcCCCCCC
Q 031792 6 KAKIEGTVREILVKSDMTETTEFQIRKQASEKMGLDLSQ 44 (153)
Q Consensus 6 k~~i~~~V~eILk~aDl~t~Te~~vR~~l~~~lgvdLs~ 44 (153)
=++..++|++.|++..|...++..+...+.+++|+|+..
T Consensus 12 ~~e~~~~l~~al~~~Gf~v~~~id~~~~l~~k~g~~~~~ 50 (129)
T 1j3m_A 12 LAEARAQVEAALKEEGFGILTEIDVAATLKAKLGLEKPP 50 (129)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHCCCCCC
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCHHHHHHHhcCCCCCC
Confidence 357788999999999999999999999999999999864
No 40
>2cgq_A Acyl carrier protein ACPA; RV0033, protein transport, phosphopant; 1.83A {Mycobacterium tuberculosis}
Probab=31.34 E-value=34 Score=24.25 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhhc-------------CCcchhhHHHHHHHHhHHcCCCCCCh
Q 031792 6 KAKIEGTVREILVK-------------SDMTETTEFQIRKQASEKMGLDLSQP 45 (153)
Q Consensus 6 k~~i~~~V~eILk~-------------aDl~t~Te~~vR~~l~~~lgvdLs~~ 45 (153)
+.+|...|++||.+ -.++++..-.+-..++++||+.++..
T Consensus 28 ~~ei~~~v~~il~e~l~I~~d~~l~~dLGlDSLd~veLi~~LEe~FgI~I~~e 80 (113)
T 2cgq_A 28 EEAINATIQRILRTDRGITANQVLVDDLGFDSLKLFQLITELEDEFDIAISFR 80 (113)
T ss_dssp HHHHHHHHHHHHTCCSCCCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCchhhhcCCCHHHHHHHHHHHHHHhCCCcCHH
Confidence 45677777777754 33568888899999999999999973
No 41
>1gpi_A Exoglucanase I; hydrolase, glycosidase, cellulase, beta-glucanase, glycoprotein, cellulose degradation, enzyme, reaction center; HET: NAG; 1.32A {Phanerochaete chrysosporium} SCOP: b.29.1.10 PDB: 1h46_X* 1z3t_A* 1z3v_A* 1z3w_A*
Probab=30.53 E-value=44 Score=29.68 Aligned_cols=40 Identities=30% Similarity=0.516 Sum_probs=28.3
Q ss_pred CceeEEEeeeCC------ceeEeeeeEEecCCcccCCC----ccc----ccCHH
Q 031792 90 KKRRVTIQDFKG------KTLVSIREYYTKGGKELPSA----KGI----SLTEE 129 (153)
Q Consensus 90 ~~rrvtV~~fkG------~~~VdIRE~Y~kdG~~~P~k----KGI----sLt~e 129 (153)
.++.-.|..|-+ -.|..||-||..+|+..|.. .|+ |||.+
T Consensus 272 ~k~fTVVTQFit~d~t~~G~L~EIrR~YVQ~GkvI~n~~~~~~g~~~~nSItd~ 325 (431)
T 1gpi_A 272 SKPFTVVTQFLTNDNTSTGTLSEIRRIYIQNGKVIQNSVANIPGVDPVNSITDN 325 (431)
T ss_dssp TSCEEEEEEEEETTSSTTSCEEEEEEEEEETTEEEECCCCCCTTSCCCSSBCHH
T ss_pred CCCeEEEEEeeccCCCCCCchheeeeeEEECCEEEeCCCcccCCCCCCCccCHH
Confidence 444555667875 48999999999999876443 243 77775
No 42
>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}
Probab=29.46 E-value=19 Score=33.51 Aligned_cols=15 Identities=53% Similarity=0.694 Sum_probs=13.0
Q ss_pred cccccCHHHHHHHHH
Q 031792 122 KGISLTEEQWSALRK 136 (153)
Q Consensus 122 KGIsLt~eqw~~l~~ 136 (153)
-||+||.+||+.|.-
T Consensus 28 Agi~lt~~qw~~~~p 42 (670)
T 4gua_A 28 AGIVLTGCQWSELFP 42 (670)
T ss_dssp TTCCCCHHHHHHHCH
T ss_pred cCccccHHHHHHHhH
Confidence 599999999998853
No 43
>2kr5_A PKS, aflatoxin biosynthesis polyketide synthase; acyl carrrier protein, holo, phosphopantetheine, transport protein; HET: PNS; NMR {Aspergillus parasiticus}
Probab=29.41 E-value=99 Score=19.44 Aligned_cols=41 Identities=22% Similarity=0.264 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhhhc--CC-----------cchhhHHHHHHHHhHHcCCCCCC
Q 031792 4 ETKAKIEGTVREILVK--SD-----------MTETTEFQIRKQASEKMGLDLSQ 44 (153)
Q Consensus 4 ~sk~~i~~~V~eILk~--aD-----------l~t~Te~~vR~~l~~~lgvdLs~ 44 (153)
.....|...+.++|.- .+ ++++..-.++..+++.||++++.
T Consensus 11 ~~~~~l~~~~~~~l~~~~~~i~~~~~~~~lG~DSL~~~~l~~~l~~~~g~~l~~ 64 (89)
T 2kr5_A 11 EKLDAVMRVVSEESGIALEELTDDSNFADMGIDSLSSMVIGSRFREDLGLDLGP 64 (89)
T ss_dssp HHHHHHHHHHHHHHCCCGGGCCTTCBHHHHTCCHHHHHHHHHHHHHTTCCCCCS
T ss_pred HHHHHHHHHHHHHHCcCHHHCCCCCCHHHcCccHHHHHHHHHHHHHHHCCCCCc
Confidence 3455666677777753 11 56778889999999999999875
No 44
>1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis} SCOP: a.28.1.1
Probab=29.32 E-value=1.3e+02 Score=20.41 Aligned_cols=22 Identities=18% Similarity=0.367 Sum_probs=19.2
Q ss_pred chhhHHHHHHHHhHHcCCCCCC
Q 031792 23 TETTEFQIRKQASEKMGLDLSQ 44 (153)
Q Consensus 23 ~t~Te~~vR~~l~~~lgvdLs~ 44 (153)
+++..-.+...++++||++++.
T Consensus 40 DSL~~vel~~~lE~~fgi~i~~ 61 (115)
T 1klp_A 40 DSLSMVEIAVQTEDKYGVKIPD 61 (115)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCH
T ss_pred CHHHHHHHHHHHHHHHCCCCCH
Confidence 4677779999999999999986
No 45
>2pag_A Hypothetical protein; nysgx, target 10412I, novel fold, structural genomics, PSI-2 structure initiative; 1.60A {Pseudomonas syringae PV} SCOP: d.369.1.1
Probab=29.22 E-value=68 Score=23.19 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=33.5
Q ss_pred HHHHHHHHhhh--cCCcchhhHHHHHHHHhHHcCCCCCChhHHHHHhhh
Q 031792 8 KIEGTVREILV--KSDMTETTEFQIRKQASEKMGLDLSQPEYKAFVRHK 54 (153)
Q Consensus 8 ~i~~~V~eILk--~aDl~t~Te~~vR~~l~~~lgvdLs~~~~K~~Vr~~ 54 (153)
.|.+.+.+++. ...+...|+..|. .+++.||+.|.. +||.|+..-
T Consensus 3 ~~ie~L~~~~~~~~~~~~~~t~e~I~-~~E~~Lgi~fP~-dYk~fl~~~ 49 (135)
T 2pag_A 3 EVIEQLREANEPVPVPLELPDEDQLV-EIEEQLFINIPF-VFKEFLLTV 49 (135)
T ss_dssp HHHHHHHHHCCCCSSCCCCCCHHHHH-HHHHHHTCCCCH-HHHHHHHHH
T ss_pred HHHHHHHHhhccCCCCCCCCCHHHHH-HHHHHHCCCCCH-HHHHHHHHC
Confidence 45666677664 3466777776664 589999999985 899999865
No 46
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=28.89 E-value=62 Score=22.89 Aligned_cols=39 Identities=10% Similarity=0.199 Sum_probs=31.3
Q ss_pred CChHHHHHHHHHHHHhhhcCCcchhhHHHHHHHHhHHcCCCCC
Q 031792 1 MKAETKAKIEGTVREILVKSDMTETTEFQIRKQASEKMGLDLS 43 (153)
Q Consensus 1 M~~~sk~~i~~~V~eILk~aDl~t~Te~~vR~~l~~~lgvdLs 43 (153)
|.+.+|+.|.....+++.+-.++.+|...|=+ ..|++..
T Consensus 9 ~~~~tr~~Il~aa~~l~~~~G~~~~ti~~Ia~----~agvs~~ 47 (189)
T 3vp5_A 9 LSDEKRNRVYDACLNEFQTHSFHEAKIMHIVK----ALDIPRG 47 (189)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCTTTCCHHHHHH----HHTCCHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCcccccHHHHHH----HhCCChH
Confidence 45679999999999999999999999877744 4466543
No 47
>2ovw_A Endoglucanase I; glycosyl hydrolase, complexed with cellobio glycosylated protein, hydrolase; HET: NAG CBI; 2.30A {Fusarium oxysporum} SCOP: b.29.1.10 PDB: 3ovw_A* 4ovw_A* 1ovw_A*
Probab=28.41 E-value=51 Score=29.08 Aligned_cols=40 Identities=18% Similarity=0.354 Sum_probs=27.9
Q ss_pred CceeEEEeeeCC---ceeEeeeeEEecCCcccCCC----ccc----ccCHH
Q 031792 90 KKRRVTIQDFKG---KTLVSIREYYTKGGKELPSA----KGI----SLTEE 129 (153)
Q Consensus 90 ~~rrvtV~~fkG---~~~VdIRE~Y~kdG~~~P~k----KGI----sLt~e 129 (153)
.++.-.|..|-+ -.|..||-||..+|+..|.. .|+ |||.+
T Consensus 263 ~k~fTVVTQFit~~~G~L~EIrR~YVQ~GkvI~n~~~~~~g~~~~nSItd~ 313 (411)
T 2ovw_A 263 TRKFTVTSQFVANKQGDLIELHRHYIQDNKVIESAVVNISGPPKINFINDK 313 (411)
T ss_dssp TSCEEEEEEEEECTTSCEEEEEEEEEETTEEEECCCCCSSSSCSCSSBCHH
T ss_pred CCCeEEEeeeecCCCCCcceeeEEEEECCEEEeCCCcccCCCCCCCccCHH
Confidence 444455666864 48999999999999876443 243 77764
No 48
>4fus_A RTX toxins and related Ca2+-binding protein; glycosyl hydrolase, GH48, hydrolase; HET: OHI CBI GOL; 1.75A {Hahella chejuensis}
Probab=28.05 E-value=13 Score=34.71 Aligned_cols=15 Identities=27% Similarity=0.612 Sum_probs=13.0
Q ss_pred CCceeEeeeeEEecC
Q 031792 100 KGKTLVSIREYYTKG 114 (153)
Q Consensus 100 kG~~~VdIRE~Y~kd 114 (153)
.|.+|+|||-||.+|
T Consensus 603 ~g~tF~~IRs~Yk~D 617 (695)
T 4fus_A 603 SESTFLSMRSFYLDD 617 (695)
T ss_dssp TTCBTTTTCGGGGGC
T ss_pred CCCeeeechhhhccC
Confidence 367999999999987
No 49
>2kw2_A Specialized acyl carrier protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} PDB: 2ll8_A* 2lpk_A 3lmo_A
Probab=27.52 E-value=1.2e+02 Score=20.24 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhhh--------------cCCcchhhHHHHHHHHhHHcCCCCCC
Q 031792 5 TKAKIEGTVREILV--------------KSDMTETTEFQIRKQASEKMGLDLSQ 44 (153)
Q Consensus 5 sk~~i~~~V~eILk--------------~aDl~t~Te~~vR~~l~~~lgvdLs~ 44 (153)
...+|.+.+.++|. +-.++++..-.+...+++.||+.++.
T Consensus 4 i~~~v~~ii~~~l~~~~~~i~~d~~l~~dLGlDSL~~veLi~~lE~~fgi~i~~ 57 (101)
T 2kw2_A 4 TFDRVATIIAETCDIPRETITPESHAIDDLGIDSLDFLDIAFAIDKAFGIKLPL 57 (101)
T ss_dssp HHHHHHHHHHHHHCCCGGGCCTTCBCCCCCCCCHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHhhCCCCcchHHhcCCCHHHHHHHHHHHHHHHCCccCH
Confidence 44566666666652 22345778889999999999999987
No 50
>3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ejd_A* 3eje_A*
Probab=27.06 E-value=1e+02 Score=20.51 Aligned_cols=24 Identities=4% Similarity=0.144 Sum_probs=20.4
Q ss_pred CcchhhHHHHHHHHhHHcCCCCCC
Q 031792 21 DMTETTEFQIRKQASEKMGLDLSQ 44 (153)
Q Consensus 21 Dl~t~Te~~vR~~l~~~lgvdLs~ 44 (153)
.++++..-.+...++++||+.++.
T Consensus 53 GlDSL~~vel~~~lE~~fgi~i~~ 76 (97)
T 3ejb_A 53 GADSLDTVELVMALEEEFDTEIPD 76 (97)
T ss_dssp CCCTTHHHHHHHHHHHHTTCCCCH
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCH
Confidence 445677889999999999999987
No 51
>1eg1_A Endoglucanase I; mutation, cellulose degradation; HET: NAG; 3.60A {Hypocrea jecorina} SCOP: b.29.1.10
Probab=26.98 E-value=47 Score=28.92 Aligned_cols=32 Identities=38% Similarity=0.566 Sum_probs=24.2
Q ss_pred CceeEEEeeeCC------ceeEeeeeEEecCCcccCCC
Q 031792 90 KKRRVTIQDFKG------KTLVSIREYYTKGGKELPSA 121 (153)
Q Consensus 90 ~~rrvtV~~fkG------~~~VdIRE~Y~kdG~~~P~k 121 (153)
.++.-.|..|-+ -.|..||-+|..+|+..|..
T Consensus 246 ~k~fTVVTQFit~d~t~~G~L~EIrR~YVQ~GkvI~n~ 283 (371)
T 1eg1_A 246 SKTFTIITQFNTDNGSPSGNLVSITRKYQQNGVDIPSA 283 (371)
T ss_dssp TSCEEEEEEEEETTSSTTSCEEEEEEEEEETTEECCCS
T ss_pred CCCeEEEeeeecCCCCCCCccceeeEEEEECCEEEeCC
Confidence 344445566875 48999999999999988665
No 52
>4i4d_A Peptide synthetase NRPS type II-PCP; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MLY; 2.10A {Streptomyces verticillus}
Probab=26.84 E-value=1.3e+02 Score=19.44 Aligned_cols=39 Identities=18% Similarity=0.189 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhhcCC-----------cchhhHHHHHHHHhHHcCCCCCC
Q 031792 6 KAKIEGTVREILVKSD-----------MTETTEFQIRKQASEKMGLDLSQ 44 (153)
Q Consensus 6 k~~i~~~V~eILk~aD-----------l~t~Te~~vR~~l~~~lgvdLs~ 44 (153)
...|...+.++|.-.+ .+++..-.+...+...||++++.
T Consensus 18 e~~l~~i~~~vL~~~~i~~~~~Ff~lGgdSL~a~~l~~~l~~~~g~~l~~ 67 (93)
T 4i4d_A 18 ERDIAAIWAETLGRDSVGPHEDFAALGGNSIHAIXITNRVEELVDAELSI 67 (93)
T ss_dssp HHHHHHHHHHHHTCSCCCTTCCTTTTTCCHHHHHHHHHHHHHHHTSCCCH
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHcCCcHHHHHHHHHHHHHHhCCCCCH
Confidence 3445555666665322 47788999999999999999986
No 53
>2liu_A CURA; holo state, transferase; NMR {Lyngbya majuscula} PDB: 2liw_A*
Probab=26.49 E-value=1.3e+02 Score=19.12 Aligned_cols=39 Identities=15% Similarity=0.235 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhhc--C-----------CcchhhHHHHHHHHhHHcCCCCCC
Q 031792 6 KAKIEGTVREILVK--S-----------DMTETTEFQIRKQASEKMGLDLSQ 44 (153)
Q Consensus 6 k~~i~~~V~eILk~--a-----------Dl~t~Te~~vR~~l~~~lgvdLs~ 44 (153)
...|...+.++|.- . -++++..-.++..++..||++++.
T Consensus 23 ~~~l~~~~~~~l~~~~~~i~~~~~~~~lG~DSl~~~~l~~~l~~~~g~~l~~ 74 (99)
T 2liu_A 23 KQVLKQQLAEALYTEESEIAEDQKFVDLGLDSIVGVEWTTTINQTYNLNLKA 74 (99)
T ss_dssp HHHHHHHHHHHTTSCGGGCCSSSCHHHHTCCHHHHHHHHHHHHHHHTCCCCH
T ss_pred HHHHHHHHHHHHCcCHHHcCCCCCHHHhCccHHHHHHHHHHHHHHHCCCcCH
Confidence 34555666666642 1 156778889999999999999986
No 54
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=24.21 E-value=38 Score=24.21 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=16.4
Q ss_pred CCcccccCHHHHHHHHHhHH
Q 031792 120 SAKGISLTEEQWSALRKNVS 139 (153)
Q Consensus 120 ~kKGIsLt~eqw~~l~~~~~ 139 (153)
+-|||.||.+|=..++....
T Consensus 12 ~~~~L~LTd~Qk~qir~L~~ 31 (108)
T 3o39_A 12 SFKDLNLTDAQKQQIREIMK 31 (108)
T ss_dssp -CCCSCCCHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHH
Confidence 46999999999998887664
No 55
>2afd_A Protein ASL1650; twisted antiparallel helical bundle, acyl carrier protein FA structural genomics, PSI, protein structure initiative; NMR {Nostoc SP} PDB: 2afe_A
Probab=23.50 E-value=1.4e+02 Score=18.44 Aligned_cols=40 Identities=10% Similarity=0.170 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhhhc--C-----------CcchhhHHHHHHHHhHHcCCCCCC
Q 031792 5 TKAKIEGTVREILVK--S-----------DMTETTEFQIRKQASEKMGLDLSQ 44 (153)
Q Consensus 5 sk~~i~~~V~eILk~--a-----------Dl~t~Te~~vR~~l~~~lgvdLs~ 44 (153)
....|...+.++|.- . -++++..-.++..+++.||++++.
T Consensus 15 ~~~~l~~~~~~~l~~~~~~i~~~~~~~~lG~DSl~~~~l~~~l~~~~~~~i~~ 67 (88)
T 2afd_A 15 IQSWLIDQFAQQLDVDPDDIDMEESFDNYDLNSSKALILLGRLEKWLGKELNP 67 (88)
T ss_dssp HHHHHHHHHHHHHTSCGGGCCTTSCGGGTTCCSTHHHHHHHHHHHHTTSCCCG
T ss_pred HHHHHHHHHHHHHCcCHHHcCCCCCHHHcCccHHHHHHHHHHHHHHHCCCcCH
Confidence 344556666666653 1 256788889999999999999986
No 56
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=23.21 E-value=54 Score=23.63 Aligned_cols=39 Identities=18% Similarity=0.189 Sum_probs=30.6
Q ss_pred CChHHHHHHHHHHHHhhhcCCcchhhHHHHHHHHhHHcCCCCC
Q 031792 1 MKAETKAKIEGTVREILVKSDMTETTEFQIRKQASEKMGLDLS 43 (153)
Q Consensus 1 M~~~sk~~i~~~V~eILk~aDl~t~Te~~vR~~l~~~lgvdLs 43 (153)
|+..+|++|.....+++.+--++.+|...|=+ ..||+.+
T Consensus 2 m~~~tr~~Il~aA~~lf~~~G~~~~t~~~IA~----~Agvs~~ 40 (228)
T 3nnr_A 2 MTMKTRDKILLSSLELFNDKGERNITTNHIAA----HLAISPG 40 (228)
T ss_dssp --CCHHHHHHHHHHHHHHHHCGGGCCHHHHHH----HHTCCHH
T ss_pred CCchHHHHHHHHHHHHHHHhChhhcCHHHHHH----HhCCCCc
Confidence 77889999999999999999999999887744 4466544
No 57
>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}
Probab=23.18 E-value=22 Score=30.41 Aligned_cols=13 Identities=46% Similarity=1.017 Sum_probs=11.7
Q ss_pred cccccCHHHHHHH
Q 031792 122 KGISLTEEQWSAL 134 (153)
Q Consensus 122 KGIsLt~eqw~~l 134 (153)
-||+||.+||+.|
T Consensus 22 Agi~lt~~qw~~~ 34 (320)
T 2hwk_A 22 AGIDMTTEQWNTV 34 (320)
T ss_dssp TTCCCCHHHHTTS
T ss_pred cCccccHHHhccc
Confidence 5999999999884
No 58
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=22.93 E-value=31 Score=18.07 Aligned_cols=19 Identities=32% Similarity=0.602 Sum_probs=13.6
Q ss_pred CcccCCCCCeEEEEeCCcee
Q 031792 74 NAEYDDEGNLIICQLNKKRR 93 (153)
Q Consensus 74 ~~~~d~~gd~~~~~Ls~~rr 93 (153)
..-||.+|+.+ ..|+..+|
T Consensus 7 s~IYD~~g~~i-~~lg~e~R 25 (26)
T 2v2f_A 7 SKIYDNKNQLI-ADLGSERX 25 (26)
T ss_pred CEEEeCCCCEe-eecccccc
Confidence 45689999887 57876544
No 59
>2xsp_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycoside hydrolase; HET: NAG EPE XYS; 1.70A {Heterobasidion annosum} PDB: 2yg1_A*
Probab=22.55 E-value=57 Score=29.00 Aligned_cols=40 Identities=28% Similarity=0.544 Sum_probs=28.1
Q ss_pred CceeEEEeeeCC------ceeEeeeeEEecCCcccCCC----ccc----ccCHH
Q 031792 90 KKRRVTIQDFKG------KTLVSIREYYTKGGKELPSA----KGI----SLTEE 129 (153)
Q Consensus 90 ~~rrvtV~~fkG------~~~VdIRE~Y~kdG~~~P~k----KGI----sLt~e 129 (153)
.++.-.|..|-+ -.|..||-||..+|+..|.. .|+ |||.+
T Consensus 283 ~k~fTVVTQFit~d~t~~G~L~EIrR~YVQ~GkvI~n~~~~~~g~~~~nSItd~ 336 (440)
T 2xsp_A 283 NSKFTVVTQFLTSDNTTTGTLHEIRRLYVQNGKVIANSKTNIAGMSQFDSITDD 336 (440)
T ss_dssp TSCEEEEEEEEETTSSTTSCEEEEEEEEEETTEEEECCCCCCTTSCCCSSEEHH
T ss_pred CCCeEEEEEeeccCCCCCCchheeeeeEEECCEEEeCCCcccCCCCcCCccCHH
Confidence 444555667875 48999999999999876543 243 67764
No 60
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=21.86 E-value=1.2e+02 Score=25.79 Aligned_cols=39 Identities=15% Similarity=0.280 Sum_probs=22.4
Q ss_pred CCCCeEEEEeCCceeEEEeee-CCceeEeeeeEEecCCccc
Q 031792 79 DEGNLIICQLNKKRRVTIQDF-KGKTLVSIREYYTKGGKEL 118 (153)
Q Consensus 79 ~~gd~~~~~Ls~~rrvtV~~f-kG~~~VdIRE~Y~kdG~~~ 118 (153)
+.|-+.++.=.+...+++|=| .|-+.||| |||..||+..
T Consensus 42 ~~g~l~~~~~~~~~~~~~r~~~~glv~~~~-~~~~~d~~~~ 81 (364)
T 2qfm_A 42 DHGYLATYTNKNGSFANLRIYPHGLVLLDL-QSYDGDAQGK 81 (364)
T ss_dssp TTEEEEEEECTTSCEEEEEECTTSEEEEEE-EEC-------
T ss_pred CCceEEEEecCCCcEEEEEeeccceEEEeh-hhhcccccch
Confidence 344444443345678999999 69999999 5677776543
No 61
>3or1_C Sulfite reductase GAMA; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} SCOP: d.203.1.1 PDB: 3or2_C* 2v4j_C* 2xsj_C*
Probab=21.43 E-value=41 Score=24.09 Aligned_cols=20 Identities=10% Similarity=0.114 Sum_probs=15.4
Q ss_pred ccCCCccc-ccCHHHHHHHHH
Q 031792 117 ELPSAKGI-SLTEEQWSALRK 136 (153)
Q Consensus 117 ~~P~kKGI-sLt~eqw~~l~~ 136 (153)
.+--.-|| .||.++|..+.-
T Consensus 32 ~lA~~egI~eLTe~HW~vI~f 52 (105)
T 3or1_C 32 YAKGSEGIGAGSADHQKIIDF 52 (105)
T ss_dssp HHGGGGTCSSCCHHHHHHHHH
T ss_pred HHHHHCCCccCCHHHHHHHHH
Confidence 34446799 999999987754
No 62
>3pfz_A Cellobiohydrolase 1 catalytic domain; cellulose; HET: PCA NAG BMA MAN CTT CBI; 1.10A {Talaromyces emersonii} SCOP: b.29.1.10 PDB: 1q9h_A* 3pfj_A* 3pfx_A* 3pl3_A*
Probab=20.87 E-value=65 Score=28.63 Aligned_cols=40 Identities=28% Similarity=0.484 Sum_probs=27.3
Q ss_pred CceeEEEeeeCC------ceeEeeeeEEecCCcccCCC-------cccccCHH
Q 031792 90 KKRRVTIQDFKG------KTLVSIREYYTKGGKELPSA-------KGISLTEE 129 (153)
Q Consensus 90 ~~rrvtV~~fkG------~~~VdIRE~Y~kdG~~~P~k-------KGIsLt~e 129 (153)
.++.-.|..|-+ -.|..||-||..+|+..|.. .+=|||.+
T Consensus 280 tk~fTVVTQFit~dgt~~G~L~EIrR~YVQnGkvI~n~~~~~~g~~~nSItd~ 332 (437)
T 3pfz_A 280 TKPFTVVTQFLTDDGTDTGTLSEIKRFYIQNSNVIPQPNSDISGVTGNSITTE 332 (437)
T ss_dssp TSCEEEEEEEEETTSSTTSCEEEEEEEEEETTEEEECCCCCSTTCCSSSBCHH
T ss_pred CCCeEEEEEeecCCCCCCCchhheeEEEEECCEEEeCCCccCCCCCCCccCHH
Confidence 444455667842 48999999999999865433 24567764
No 63
>1sau_A Sulfite reductase, desulfoviridin-type subunit GA; orthogonal helical bundle, oxidoreductase; 1.12A {Archaeoglobus fulgidus} PDB: 2a5w_A
Probab=20.56 E-value=43 Score=24.47 Aligned_cols=15 Identities=47% Similarity=0.842 Sum_probs=13.0
Q ss_pred cccccCHHHHHHHHH
Q 031792 122 KGISLTEEQWSALRK 136 (153)
Q Consensus 122 KGIsLt~eqw~~l~~ 136 (153)
-||.||.++|..+.-
T Consensus 42 egIeLTe~HW~VI~f 56 (115)
T 1sau_A 42 QPIELTEEHWKIIRY 56 (115)
T ss_dssp SCCCCCHHHHHHHHH
T ss_pred CCceECHHHHHHHHH
Confidence 799999999987654
No 64
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}
Probab=20.26 E-value=3.5e+02 Score=21.97 Aligned_cols=45 Identities=13% Similarity=0.226 Sum_probs=35.0
Q ss_pred eeEeeeeEEecCCcccCCCcccccCHHHHHHHHHhHHHHHHHHHHhhc
Q 031792 103 TLVSIREYYTKGGKELPSAKGISLTEEQWSALRKNVSAIDTAVKKMQS 150 (153)
Q Consensus 103 ~~VdIRE~Y~kdG~~~P~kKGIsLt~eqw~~l~~~~~~I~~ai~~l~~ 150 (153)
.|+.+.--..++|-+.- ++.|+.++...|.++++.|.+.++.+..
T Consensus 273 v~~s~P~~~g~~Gv~~v---~l~L~~~E~~~l~~s~~~l~~~~~~~~~ 317 (321)
T 3p7m_A 273 LFVGVPTEISANGVRPI---EVEISDKEREQLQVSINAIKDLNKAAAE 317 (321)
T ss_dssp EEEEEEEEEETTEEEEC---CCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEEcCCEEEEe---CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666665556675443 6899999999999999999998887754
No 65
>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...
Probab=20.19 E-value=1.8e+02 Score=19.59 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=10.0
Q ss_pred CChHHHHHHHHHHHHhhhcCC
Q 031792 1 MKAETKAKIEGTVREILVKSD 21 (153)
Q Consensus 1 M~~~sk~~i~~~V~eILk~aD 21 (153)
|+++-+.++.+.+.+.|..-+
T Consensus 13 M~~emq~~a~~~a~~al~~~~ 33 (89)
T 3rjs_A 13 MPEDLQQDAIDCANQALEKYN 33 (89)
T ss_dssp SCHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHHHCC
Confidence 444444455544444444433
No 66
>1zw0_A Type III secretion protein; chaperone, translocation, export; 1.80A {Yersinia pestis} PDB: 2p58_A
Probab=20.16 E-value=1.1e+02 Score=20.41 Aligned_cols=23 Identities=13% Similarity=0.406 Sum_probs=20.0
Q ss_pred CHHHHHHHHHhHHHHHHHHHHhh
Q 031792 127 TEEQWSALRKNVSAIDTAVKKMQ 149 (153)
Q Consensus 127 t~eqw~~l~~~~~~I~~ai~~l~ 149 (153)
+|.||..+.+..++|++|+.-++
T Consensus 37 ~pqqYQ~~q~q~~A~eaal~Iie 59 (66)
T 1zw0_A 37 DAKQYQVWQRESKALESAIAIIH 59 (66)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999987665
No 67
>2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens}
Probab=20.15 E-value=1.9e+02 Score=21.50 Aligned_cols=41 Identities=10% Similarity=0.152 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhhhc--C-----------CcchhhHHHHHHHHhHHcCCCCCC
Q 031792 4 ETKAKIEGTVREILVK--S-----------DMTETTEFQIRKQASEKMGLDLSQ 44 (153)
Q Consensus 4 ~sk~~i~~~V~eILk~--a-----------Dl~t~Te~~vR~~l~~~lgvdLs~ 44 (153)
.....|...+.++|.- . -++++..-.++..+++.||++|+.
T Consensus 26 ~i~~~l~~~~a~~l~~~~~~i~~~~~f~~lG~DSl~~~el~~~l~~~~g~~l~~ 79 (212)
T 2l22_A 26 ECAQFLRQSLAAMLYCEPGQIRDGSRFLELGLDSVIAAQWIREINKHYQLKIPA 79 (212)
T ss_dssp HHHHHHHHHHHHHTTCCTTSCCTTCBHHHHTCCHHHHHHHHHHHHHHTTCCCCT
T ss_pred HHHHHHHHHHHHHHCcCHHHcCCCCCHHHhCCcHHHHHHHHHHHHHHHCCCCCH
Confidence 3445666667777753 1 157788899999999999999997
Done!