BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031793
         (153 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O28033|Y2251_ARCFU Protein AF_2251 OS=Archaeoglobus fulgidus (strain ATCC 49558 /
           VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_2251
           PE=3 SV=1
          Length = 229

 Score = 41.6 bits (96), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/121 (20%), Positives = 61/121 (50%), Gaps = 10/121 (8%)

Query: 20  QMALLPEGTTELLHHDKLLLPLIKCQNVIILTATNVTELDKEWNCLIELLRSGGLSLMEP 79
           +++ +PEG+ E++ +D    P    +NV ++      E++  +  ++E    G       
Sbjct: 111 KISSVPEGS-EIVWNDVGAAPAFIVENVAVMPGVP-AEMENTFEKILERFEKG------E 162

Query: 80  YTSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIES 139
           Y  + +  N  +++    L+++  + PD+ IG Y K   G +++ F G+D+ +++ A++ 
Sbjct: 163 YHEEVVKVNGFEVKIVDKLNQVVRDNPDVEIGSYPKP--GYVMVKFSGRDKEKVKKAVKQ 220

Query: 140 L 140
            
Sbjct: 221 F 221


>sp|A6TUN0|SECA2_ALKMQ Protein translocase subunit SecA 2 OS=Alkaliphilus metalliredigens
           (strain QYMF) GN=secA2 PE=3 SV=1
          Length = 795

 Score = 31.6 bits (70), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 10/67 (14%)

Query: 5   EFLCLQFDLILGFPFQMALLPEGTTELLHHDKLLLPLIKCQNVIILTATNVTELDKEWNC 64
           +FLC +   ++  PF  A+L E  + L+  D+  +PL+         A NV+E    ++ 
Sbjct: 192 DFLCTEVKDLVHRPFNYAILDEADSILI--DEARIPLV--------IAGNVSEEGFNYDH 241

Query: 65  LIELLRS 71
           LIE++RS
Sbjct: 242 LIEIVRS 248


>sp|P29814|NTP1_AMEPV Nucleoside triphosphatase I OS=Amsacta moorei entomopoxvirus
           GN=NPH1 PE=3 SV=2
          Length = 648

 Score = 29.3 bits (64), Expect = 9.6,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 36  KLLLPLIKCQN--VIILTATNVTELDKEWNCLIELLRSGGLSLMEPYTSKSLTTNLSDL 92
           K L+ L   +N  ++ ++AT VT    E+N LI LLR   +++ E Y +     N  +L
Sbjct: 174 KKLIKLANFENNKILCMSATPVTNNISEFNNLIGLLRPNVMNIKEEYINNGKLINFKEL 232


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.140    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,962,872
Number of Sequences: 539616
Number of extensions: 1916245
Number of successful extensions: 4384
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4383
Number of HSP's gapped (non-prelim): 6
length of query: 153
length of database: 191,569,459
effective HSP length: 107
effective length of query: 46
effective length of database: 133,830,547
effective search space: 6156205162
effective search space used: 6156205162
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)