Query 031793
Match_columns 153
No_of_seqs 133 out of 995
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 05:25:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031793.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031793hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1058 CinA Predicted nucleot 100.0 7.6E-33 1.7E-37 221.4 15.0 140 3-147 100-249 (255)
2 PRK00549 competence damage-ind 100.0 1.4E-31 3E-36 227.8 16.1 145 3-151 99-254 (414)
3 PRK03673 hypothetical protein; 100.0 5.6E-31 1.2E-35 222.6 16.1 144 3-151 100-250 (396)
4 PRK03670 competence damage-ind 100.0 1.1E-29 2.5E-34 203.7 15.3 131 4-144 101-245 (252)
5 TIGR00200 cinA_nterm competenc 100.0 2.3E-27 5E-32 201.8 16.3 145 3-151 99-255 (413)
6 PRK01215 competence damage-ind 99.9 2.2E-26 4.8E-31 185.8 15.8 135 5-145 104-254 (264)
7 cd00885 cinA Competence-damage 99.7 4.1E-17 9E-22 124.1 6.7 65 4-71 99-169 (170)
8 PF00994 MoCF_biosynth: Probab 94.2 0.024 5.2E-07 41.4 1.4 34 35-70 103-143 (144)
9 smart00852 MoCF_biosynth Proba 91.2 0.26 5.6E-06 35.5 3.3 44 18-63 89-133 (135)
10 TIGR00177 molyb_syn molybdenum 90.6 0.26 5.6E-06 36.1 2.9 33 30-64 105-140 (144)
11 COG2921 Uncharacterized conser 85.6 5.9 0.00013 27.1 6.7 60 83-142 16-82 (90)
12 cd07027 RNAP_RPB11_like RPB11 73.3 17 0.00038 24.2 5.9 54 92-145 20-79 (83)
13 PRK00907 hypothetical protein; 72.1 29 0.00062 23.8 7.6 59 84-142 19-84 (92)
14 cd07029 RNAP_I_III_AC19 AC19 s 69.0 26 0.00055 23.5 6.0 53 92-144 20-78 (85)
15 PRK09417 mogA molybdenum cofac 65.6 6.3 0.00014 30.6 2.8 15 47-63 129-144 (193)
16 COG1761 RPB11 DNA-directed RNA 65.2 32 0.00069 23.9 6.0 54 92-145 26-85 (99)
17 PRK02047 hypothetical protein; 61.6 48 0.001 22.4 7.6 58 85-142 19-83 (91)
18 PRK00341 hypothetical protein; 60.6 50 0.0011 22.4 7.2 59 85-143 20-84 (91)
19 PF00408 PGM_PMM_IV: Phosphogl 59.6 25 0.00054 22.3 4.4 37 108-144 36-72 (73)
20 TIGR02667 moaB_proteo molybden 57.1 12 0.00026 28.0 2.9 23 47-71 127-151 (163)
21 PF00936 BMC: BMC domain; Int 56.3 51 0.0011 21.3 5.5 44 106-150 25-68 (75)
22 cd06926 RNAP_II_RPB11 RPB11 su 56.1 55 0.0012 22.3 5.8 53 92-144 28-86 (93)
23 PF09883 DUF2110: Uncharacteri 55.5 28 0.00061 27.7 4.8 56 87-146 8-65 (225)
24 cd00758 MoCF_BD MoCF_BD: molyb 54.5 7.2 0.00016 27.9 1.3 20 47-68 111-132 (133)
25 PF04359 DUF493: Protein of un 51.9 39 0.00085 22.2 4.5 59 84-142 12-77 (85)
26 PRK01146 DNA-directed RNA poly 51.2 72 0.0016 21.3 5.9 54 92-145 22-81 (85)
27 cd06927 RNAP_L L subunit of Ar 49.7 75 0.0016 21.1 5.7 54 92-145 20-79 (83)
28 PF13656 RNA_pol_L_2: RNA poly 48.4 61 0.0013 21.2 4.9 53 92-144 12-70 (77)
29 cd00886 MogA_MoaB MogA_MoaB fa 47.9 21 0.00046 26.1 2.9 23 47-71 124-147 (152)
30 PRK04998 hypothetical protein; 47.5 83 0.0018 21.0 7.0 56 87-142 21-80 (88)
31 PF03808 Glyco_tran_WecB: Glyc 47.2 98 0.0021 23.0 6.6 29 86-114 53-82 (172)
32 PRK03604 moaC bifunctional mol 45.2 21 0.00046 29.8 2.8 22 47-70 278-300 (312)
33 PRK15468 carboxysome structura 43.6 64 0.0014 22.9 4.6 58 85-145 44-102 (111)
34 COG1925 FruB Phosphotransferas 42.1 35 0.00077 23.1 3.1 25 118-142 58-83 (88)
35 COG1839 Uncharacterized conser 40.5 1.6E+02 0.0034 22.1 6.6 54 99-152 34-87 (162)
36 PF05036 SPOR: Sporulation rel 40.0 59 0.0013 19.9 3.8 52 89-141 13-65 (76)
37 COG4810 EutS Ethanolamine util 38.8 67 0.0014 22.6 4.1 57 85-144 54-111 (121)
38 PRK10897 phosphohistidinoprote 37.5 69 0.0015 21.6 4.0 28 118-145 60-88 (90)
39 PF02675 AdoMet_dc: S-adenosyl 34.7 1.1E+02 0.0024 20.9 4.8 40 107-148 58-97 (106)
40 cd07049 BMC_EutL_repeat1 ethan 34.2 1.4E+02 0.0029 21.0 5.0 58 87-147 32-100 (103)
41 PRK13780 phosphocarrier protei 33.1 64 0.0014 21.6 3.2 16 118-133 58-73 (88)
42 PTZ00302 N-acetylglucosamine-p 32.9 1.6E+02 0.0034 26.9 6.5 53 94-146 527-580 (585)
43 PF03135 CagE_TrbE_VirB: CagE, 32.6 1.7E+02 0.0036 22.2 5.9 37 107-149 143-179 (205)
44 cd07053 BMC_PduT_repeat1 1,2-p 32.6 1.4E+02 0.0031 19.4 6.8 45 106-151 24-68 (76)
45 PF12687 DUF3801: Protein of u 31.8 2.5E+02 0.0053 21.8 6.9 55 87-143 37-93 (204)
46 PF14492 EFG_II: Elongation Fa 30.8 1.5E+02 0.0032 19.0 6.7 63 79-145 4-68 (75)
47 PRK10850 PTS system phosphohis 30.6 1.1E+02 0.0023 20.4 4.0 18 118-135 58-75 (85)
48 COG0521 MoaB Molybdopterin bio 29.9 52 0.0011 25.1 2.6 48 18-70 103-154 (169)
49 PF02391 MoaE: MoaE protein; 29.9 2E+02 0.0043 20.2 5.5 57 88-145 52-114 (117)
50 cd03086 PGM3 PGM3 (phosphogluc 28.3 2.7E+02 0.0057 24.8 7.1 33 111-143 480-512 (513)
51 KOG1794 N-Acetylglucosamine ki 27.9 92 0.002 26.2 3.9 60 86-146 37-97 (336)
52 TIGR01046 S10_Arc_S20_Euk ribo 27.6 1.3E+02 0.0028 20.7 4.0 26 120-145 2-27 (99)
53 PF11211 DUF2997: Protein of u 27.5 1.4E+02 0.0031 17.8 4.6 36 109-147 2-37 (48)
54 PF13083 KH_4: KH domain; PDB: 27.4 1.6E+02 0.0035 18.4 5.9 41 93-133 3-43 (73)
55 cd04905 ACT_CM-PDT C-terminal 27.2 1.7E+02 0.0037 18.5 6.2 51 93-143 14-69 (80)
56 PTZ00039 40S ribosomal protein 26.0 1.4E+02 0.0031 21.2 4.2 26 120-145 18-43 (115)
57 smart00877 BMC Bacterial micro 26.0 1.9E+02 0.0041 18.6 5.9 39 106-145 24-62 (75)
58 PRK12271 rps10p 30S ribosomal 25.9 1.2E+02 0.0026 21.1 3.6 26 120-145 3-28 (102)
59 COG4044 Uncharacterized protei 25.4 1.6E+02 0.0035 23.5 4.7 25 118-145 41-65 (247)
60 KOG2794 Delta-aminolevulinic a 24.9 2.8E+02 0.0061 23.1 6.1 83 15-112 23-129 (340)
61 KOG0731 AAA+-type ATPase conta 24.8 31 0.00067 32.4 0.7 31 1-38 324-355 (774)
62 PRK11169 leucine-responsive tr 24.0 2.6E+02 0.0057 20.5 5.5 53 87-141 38-98 (164)
63 cd03084 phosphohexomutase The 23.4 1.6E+02 0.0036 24.3 4.7 32 112-143 323-354 (355)
64 cd00756 MoaE MoaE family. Memb 23.1 2.8E+02 0.0062 19.7 5.8 58 88-145 44-106 (124)
65 PRK14434 acylphosphatase; Prov 22.0 2.6E+02 0.0056 18.8 4.7 35 111-145 33-67 (92)
66 cd03089 PMM_PGM The phosphoman 21.7 2.1E+02 0.0046 24.5 5.2 25 119-143 418-442 (443)
67 PRK14320 glmM phosphoglucosami 21.4 1.6E+02 0.0034 25.4 4.3 36 112-147 406-441 (443)
68 KOG0071 GTP-binding ADP-ribosy 20.9 3.5E+02 0.0075 20.5 5.4 54 85-147 61-114 (180)
69 KOG3445 Mitochondrial/chloropl 20.8 3.6E+02 0.0078 20.0 8.3 65 83-147 26-108 (145)
70 PF05137 PilN: Fimbrial assemb 20.7 2.2E+02 0.0048 17.5 6.0 43 98-141 3-46 (78)
71 COG1648 CysG Siroheme synthase 20.7 3.9E+02 0.0084 20.8 6.0 97 47-147 39-150 (210)
72 PLN02895 phosphoacetylglucosam 20.5 4.4E+02 0.0096 23.9 7.0 36 110-145 517-552 (562)
73 PRK14322 glmM phosphoglucosami 20.3 2.1E+02 0.0046 24.4 4.9 34 112-145 395-428 (429)
No 1
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=100.00 E-value=7.6e-33 Score=221.37 Aligned_cols=140 Identities=24% Similarity=0.280 Sum_probs=123.0
Q ss_pred HHHHHHhhCCCCCcccccceeccCCCceeeeCCCCcccEEEEc----eEEEecCCCCch-hHHHHHH-HHHhHHhCCCCC
Q 031793 3 VFEFLCLQFDLILGFPFQMALLPEGTTELLHHDKLLLPLIKCQ----NVIILTATNVTE-LDKEWNC-LIELLRSGGLSL 76 (153)
Q Consensus 3 ~~~~~~~~~~~~~~~~~rqA~vP~ga~~il~N~~GtAPG~~i~----~v~~LPG~~vP~-m~~m~~~-v~p~l~~~~~~~ 76 (153)
..++|++|++.++++|+|||++|+|| ++|+||+|+|||+.++ ++|+||| ||+ |++||+. +.|++... + .
T Consensus 100 i~~~~~~r~~~~~~~~~K~A~~P~Ga-~~l~NpvG~APG~~v~~~~~~v~~lPG--vP~Em~~M~e~~~~~~l~~~-~-~ 174 (255)
T COG1058 100 IEEKYAKRGREMTEANRKQAMLPEGA-EVLDNPVGTAPGFVVEGNGKNVYVLPG--VPSEMKPMFENVLLPLLTGR-F-P 174 (255)
T ss_pred HHHHHHhcCCCCChhhhhhccCCCCC-EeCCCCCCCCCeeEEecCCeEEEEeCC--CCHHHHHHHHHHHHHHhhcc-C-C
Confidence 56788999999999999999999999 9999999999999997 7999999 999 9999985 67777654 2 2
Q ss_pred CCCeEEEEEE-eCCChhhhHHHHHHhhhhCCCcEEEEccccCCeeEE---EEEEecCHHHHHHHHHHHHHHcccC
Q 031793 77 MEPYTSKSLT-TNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLI---ISFEGKDQARIEAAIESLFKKFHRG 147 (153)
Q Consensus 77 ~~~~~~~~l~-~g~~ES~l~~~L~~l~~~~~~v~ig~yp~~~~~~v~---l~~~g~~~~~~~~~~~~l~~~l~~~ 147 (153)
..++++++++ +|++||.|++.|++++..+++++++|||+.+++..+ |+.+++|++.++++.+++..++.+.
T Consensus 175 ~~~~~~~~~~~~gi~ES~la~~L~~i~~~~~~~~i~s~p~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 249 (255)
T COG1058 175 STKYYSRVLRVFGIGESSLAPTLKDLQDEQPNVTIASYPKDGEVRLRELVIRAEARDEEEADALLRWLEGRLRAR 249 (255)
T ss_pred CCceEEEEEEEcCCChHHHHHHHHHHHhcCCCCEEEecCCCCceeccceEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 2578999998 899999999999999999999999999998877554 8888899998888888887776543
No 2
>PRK00549 competence damage-inducible protein A; Provisional
Probab=99.98 E-value=1.4e-31 Score=227.82 Aligned_cols=145 Identities=16% Similarity=0.172 Sum_probs=125.8
Q ss_pred HHHHHHhhCCCCCcccccceeccCCCceeeeCCCCcccEEEEc----eEEEecCCCCch-hHHHHHH-HHHhHHhCCCCC
Q 031793 3 VFEFLCLQFDLILGFPFQMALLPEGTTELLHHDKLLLPLIKCQ----NVIILTATNVTE-LDKEWNC-LIELLRSGGLSL 76 (153)
Q Consensus 3 ~~~~~~~~~~~~~~~~~rqA~vP~ga~~il~N~~GtAPG~~i~----~v~~LPG~~vP~-m~~m~~~-v~p~l~~~~~~~ 76 (153)
+.+||+++++.|++.|.|||++|+|| ++|+||+||||||+++ .||+||| ||+ |++||+. ++|+|++. +..
T Consensus 99 i~~~~~~~~~~~~~~n~kqA~~P~ga-~~l~N~~GtApG~~~~~~~~~i~~lPG--vP~Em~~m~~~~v~p~l~~~-~~~ 174 (414)
T PRK00549 99 IEDYFAKRGREMTENNRKQALIPEGA-TVLPNPVGTAPGMIIEVDGKTYIVLPG--PPSELKPMFEEYVVPYLSSA-KGT 174 (414)
T ss_pred HHHHHHHcCCCCChHHHHhhcCCCCC-EECcCCCCcCCeEEEEECCEEEEEeCC--CcHHHHHHHHHHhHHHHHhh-cCC
Confidence 34688888899999999999999999 9999999999999996 4999999 999 9999984 89999753 212
Q ss_pred CCCeEEEEEE-eCCChhhhHHHHHHhhhhCCCcEEEEccccCCeeEEEEEEecCHHHH----HHHHHHHHHHcccCceee
Q 031793 77 MEPYTSKSLT-TNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARI----EAAIESLFKKFHRGAFSE 151 (153)
Q Consensus 77 ~~~~~~~~l~-~g~~ES~l~~~L~~l~~~~~~v~ig~yp~~~~~~v~l~~~g~~~~~~----~~~~~~l~~~l~~~i~~~ 151 (153)
...+++++++ +|++||+|++.|.++...++++++|+||+.+.++|+|++++.|++.+ +++.++|+++|++++|+.
T Consensus 175 ~~~~~~~~l~~~gi~Es~l~~~L~~l~~~~~~v~ig~~~~~~~~~vrl~~~~~~~~~~~~~~~~~~~~i~~~lg~~~~~~ 254 (414)
T PRK00549 175 GEVLYSRVLRFFGIGESQLATTLRDLIDNQTNPTIAPYAKDGEVTLRLTAKARSEEEAEKLIDPLEEEIRDRVGDYFYGY 254 (414)
T ss_pred CceEEEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECccCCEEEEEEEEecCCHHHHHHHHHHHHHHHHHHhccceecC
Confidence 2357888887 89999999999999988888999999999877889999999987654 557778899999999974
No 3
>PRK03673 hypothetical protein; Provisional
Probab=99.97 E-value=5.6e-31 Score=222.64 Aligned_cols=144 Identities=18% Similarity=0.123 Sum_probs=124.9
Q ss_pred HHHHHHhhCCCCCcccccceeccCCCceeeeCCCCcccEEEEc----eEEEecCCCCch-hHHHHH-HHHHhHHhCCCCC
Q 031793 3 VFEFLCLQFDLILGFPFQMALLPEGTTELLHHDKLLLPLIKCQ----NVIILTATNVTE-LDKEWN-CLIELLRSGGLSL 76 (153)
Q Consensus 3 ~~~~~~~~~~~~~~~~~rqA~vP~ga~~il~N~~GtAPG~~i~----~v~~LPG~~vP~-m~~m~~-~v~p~l~~~~~~~ 76 (153)
+.+||+++++.|+++|+|||++|+|| ++|+||+|||||++++ .+|+||| ||+ |++||+ +++|+|+.. +..
T Consensus 100 i~~~f~~~~~~m~~~n~kQA~~P~ga-~~l~N~~GtApG~~~~~~~~~i~~LPG--vP~Emk~M~~~~v~p~L~~~-~~~ 175 (396)
T PRK03673 100 MERFFAERGRVMAPSNRKQAELPASA-EMIDNPVGTACGFALQLNRCLMFFTPG--VPSEFKVMVEQEILPRLRER-FSL 175 (396)
T ss_pred HHHHHHhcCCCCChhHHhhccCCCCC-eeccCCCccCCcEEEEECCEEEEEECC--ChHHHHHHHHHHHHHHHHhh-cCC
Confidence 45788888999999999999999999 9999999999999996 3999999 999 999997 599999754 322
Q ss_pred CCCeEEEEEE-eCCChhhhHHHHHHhhhhCCCcEEEEccccCCeeEEEEEEecCHHHHHHHHHHHHHHcccCceee
Q 031793 77 MEPYTSKSLT-TNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHRGAFSE 151 (153)
Q Consensus 77 ~~~~~~~~l~-~g~~ES~l~~~L~~l~~~~~~v~ig~yp~~~~~~v~l~~~g~~~~~~~~~~~~l~~~l~~~i~~~ 151 (153)
...++++.++ +|++||++++.|.++.. .+++++|+|++.+.++++|+.++.+.+.++++.+++++++++++|+.
T Consensus 176 ~~~~~~~~l~~~Gi~ES~l~~~l~~l~~-~~~~~i~~~~~~~~v~vrlt~~~~~~~~~~~~~~~i~~~lg~~v~~~ 250 (396)
T PRK03673 176 PEPPLCLRLTTFGRSESDLAQSLDPLPL-PPGVVMGYRSSMPIIELKLTGPASQRQAMEQLWQQVRRVAGQSVIFE 250 (396)
T ss_pred CCceEEEEEEECCCCHHHHHHHHHHHhc-CCCCEEeecCCCCeEEEEEEEccCCHHHHHHHHHHHHHHhCCcEEEe
Confidence 1346677787 79999999999999852 34899999999888899999999887668889999999999999974
No 4
>PRK03670 competence damage-inducible protein A; Provisional
Probab=99.97 E-value=1.1e-29 Score=203.68 Aligned_cols=131 Identities=19% Similarity=0.191 Sum_probs=112.6
Q ss_pred HHHHHhhCC-------CCCcccccceeccCCCceeeeCCCCcccEEEEc----eEEEecCCCCch-hHHHHHH-HHHhHH
Q 031793 4 FEFLCLQFD-------LILGFPFQMALLPEGTTELLHHDKLLLPLIKCQ----NVIILTATNVTE-LDKEWNC-LIELLR 70 (153)
Q Consensus 4 ~~~~~~~~~-------~~~~~~~rqA~vP~ga~~il~N~~GtAPG~~i~----~v~~LPG~~vP~-m~~m~~~-v~p~l~ 70 (153)
.++|+++++ .+++++.|||++|+|| ++|+|++|+||||+++ ++|+||| ||+ |++||+. ++|+|.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~kmA~~P~ga-~~l~N~~g~ApG~~~~~~~~~v~~lPG--vP~e~~~M~~~~v~p~l~ 177 (252)
T PRK03670 101 KEFYEELYKKGLIDDPTLNEARKKMAYLPEGA-EPLENTEGAAPGAYIEHKGTKIFVLPG--MPREMKAMLEKEVLPRLG 177 (252)
T ss_pred HHHHHHhcccccccccccChHHHheeCCCCCC-EECCCCCCcCceEEEEECCeEEEEeCC--ChHHHHHHHHHHHHHhhc
Confidence 456665543 6789999999999999 9999999999999997 7999999 999 9999985 899884
Q ss_pred hCCCCCCCCeEEEEEE-eCCChhhhHHHHHHhhhhCCCcEEEEccccCCeeEEEEEEecCHHHHHHHHHHHHHHc
Q 031793 71 SGGLSLMEPYTSKSLT-TNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKF 144 (153)
Q Consensus 71 ~~~~~~~~~~~~~~l~-~g~~ES~l~~~L~~l~~~~~~v~ig~yp~~~~~~v~l~~~g~~~~~~~~~~~~l~~~l 144 (153)
. .+++++.+. ++.+||+|++.|++++.+++ |+|||||+..+.+++|+++|.|++.++++.++|++..
T Consensus 178 ~------~~~~~~~~~~~~~~Es~la~~l~~~~~~~~-v~igSyP~~~~~~~~l~~~g~~~~~~~~a~~~l~~~~ 245 (252)
T PRK03670 178 E------RKFVQKKFLAEITDESKLAPILEEALERFN-VKIHSSPKGFGKYIGIIIFAEDEEEIEKAVEFMEERG 245 (252)
T ss_pred c------CCeEEEEEEeCCCCHHHHHHHHHHHHHHCC-ceEecCCCCCCCcEEEEEEECCHHHHHHHHHHHHHhC
Confidence 3 346677776 68999999999999999995 9999999833447899999999999999999997543
No 5
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=99.95 E-value=2.3e-27 Score=201.79 Aligned_cols=145 Identities=15% Similarity=0.096 Sum_probs=123.2
Q ss_pred HHHHHHhhCCCCCcccccceeccCCCceeeeCCCCcccEEEE-c--e--EEEecCCCCch-hHHHHH-HHHHhHHhCCCC
Q 031793 3 VFEFLCLQFDLILGFPFQMALLPEGTTELLHHDKLLLPLIKC-Q--N--VIILTATNVTE-LDKEWN-CLIELLRSGGLS 75 (153)
Q Consensus 3 ~~~~~~~~~~~~~~~~~rqA~vP~ga~~il~N~~GtAPG~~i-~--~--v~~LPG~~vP~-m~~m~~-~v~p~l~~~~~~ 75 (153)
+.++|+++++.|+++|.|||++|+|| ++|+|++|+|||+++ . + |++||| ||. |++||+ .+.|+|+.. +.
T Consensus 99 i~~~~~~~g~~~~~~n~kqA~~p~ga-~~l~N~~G~APG~~~~~~~~~~i~~LPG--~P~e~~~m~~~~v~p~l~~~-~~ 174 (413)
T TIGR00200 99 IERYFHETGRVMAPNNRKQALLPAGA-EFLANPVGTAPGMFAVQLNRCLMLFTPG--VPSEFRVMVEHEALPRLRER-FS 174 (413)
T ss_pred HHHHHHhcCCCCChHHHHhcCCCCCC-EECCCCCCCCCeeEEEecCCEEEEEeCC--CcHHHHHHHHHHhhHHHHHh-cC
Confidence 45678888999999999999999999 999999999999655 2 2 888999 999 999998 588999653 21
Q ss_pred CCCCeEEEEEE-eCCChhhhHHHHHHhhhhCCCcEEEEccccCCeeEEEEEEecCHHH----HHHHHHHHHHHcccCcee
Q 031793 76 LMEPYTSKSLT-TNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQAR----IEAAIESLFKKFHRGAFS 150 (153)
Q Consensus 76 ~~~~~~~~~l~-~g~~ES~l~~~L~~l~~~~~~v~ig~yp~~~~~~v~l~~~g~~~~~----~~~~~~~l~~~l~~~i~~ 150 (153)
....+++++++ +|++||++++.|.++...++++++++|++.++++++++.++.+.+. ++++.++|++++++++|+
T Consensus 175 ~~~~~~~~~~~~~Gi~ES~l~~~l~~~~~~~~~~~~~~~~~~~~v~vrl~~~~~~~~~a~~~~~~~~~~i~~~lg~~~~~ 254 (413)
T TIGR00200 175 LPQPIVSLVLRFFGIGESQLEADLADSLDTLTNPTGAPMAYRGEVPLRELKLTGPESEQQRAMEKLWLDIKRVAGQSVIG 254 (413)
T ss_pred CCceEEEEEEEECCCCHHHHHHHHHHHHhcCCCCeEEEecCCCeEEEEEEEecCCHHHHHHHHHHHHHHHHHHhCcceec
Confidence 22357788888 8999999999999998777889999999987889999999987654 355888999999999997
Q ss_pred e
Q 031793 151 E 151 (153)
Q Consensus 151 ~ 151 (153)
.
T Consensus 255 ~ 255 (413)
T TIGR00200 255 E 255 (413)
T ss_pred c
Confidence 3
No 6
>PRK01215 competence damage-inducible protein A; Provisional
Probab=99.94 E-value=2.2e-26 Score=185.83 Aligned_cols=135 Identities=16% Similarity=0.145 Sum_probs=112.1
Q ss_pred HHHHhhCCCCCcccccceeccCCCceeeeCCCCcccEEEEc----eEEEecCCCCch-hHHHHHH-HHHhHHhCCCCCCC
Q 031793 5 EFLCLQFDLILGFPFQMALLPEGTTELLHHDKLLLPLIKCQ----NVIILTATNVTE-LDKEWNC-LIELLRSGGLSLME 78 (153)
Q Consensus 5 ~~~~~~~~~~~~~~~rqA~vP~ga~~il~N~~GtAPG~~i~----~v~~LPG~~vP~-m~~m~~~-v~p~l~~~~~~~~~ 78 (153)
+||.+++..++++|.|||++|+|| ++|+|+.|||||+++. .||+||| ||. |++||+. ++|+|+.. ...
T Consensus 104 ~~~~~~~~~~~~~~~k~A~~P~ga-~~l~N~~Gtapg~~~~~~~~~i~~LPG--~P~e~~~m~~~~v~p~l~~~---~~~ 177 (264)
T PRK01215 104 EKYEKRGIPLTPERKKMAMMPPGA-VPLENPVGTAPGILIEHGGKDIVALPG--VPREMEAIFENFVEPLLKNR---PPL 177 (264)
T ss_pred HHHHhcCCCCChhHHheeeCCCCC-EecCCCCCcCCeEEEEECCEEEEEeCC--ChHHHHHHHHHHHHHHHhcc---CCC
Confidence 467777889999999999999999 9999999999999985 4999999 999 9999984 88999753 123
Q ss_pred CeEEEEEE-eCCChhhhHHHHHHhhhhCCCcEEE-----EccccCCeeEEEEEEecCHHHH----HHHHHHHHHHcc
Q 031793 79 PYTSKSLT-TNLSDLEAAQPLSKLCLEFPDLHIG-----CYRKSRQGPLIISFEGKDQARI----EAAIESLFKKFH 145 (153)
Q Consensus 79 ~~~~~~l~-~g~~ES~l~~~L~~l~~~~~~v~ig-----~yp~~~~~~v~l~~~g~~~~~~----~~~~~~l~~~l~ 145 (153)
.+++++++ +|++||+|++.|.++...++++++| +|++.+++.|+|++++.+.+.. +++.+.++++|.
T Consensus 178 ~~~~~~~~~~Gi~Es~l~~~l~~l~~~~~~~~~~s~p~~~~~~~~~v~vrl~~~~~~~~~~~~~~~~~~~~i~~~~~ 254 (264)
T PRK01215 178 KYYEDSILVEGVMESDLAPYVKELVKKYDRVYVKSHPKGYEVSKPILEIQIAGSGEREEEAKVKVEKVLEELKELIK 254 (264)
T ss_pred cEEEEEEEECCCCHHHHHHHHHHHHHhCCCCEEecCccceecCCCeEEEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Confidence 57888988 8999999999999998888999994 5566656789999988876544 446666666654
No 7
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=99.69 E-value=4.1e-17 Score=124.11 Aligned_cols=65 Identities=22% Similarity=0.240 Sum_probs=57.7
Q ss_pred HHHHHhhCCCCCcccccceeccCCCceeeeCCCCcccEEEEc----eEEEecCCCCch-hHHHHH-HHHHhHHh
Q 031793 4 FEFLCLQFDLILGFPFQMALLPEGTTELLHHDKLLLPLIKCQ----NVIILTATNVTE-LDKEWN-CLIELLRS 71 (153)
Q Consensus 4 ~~~~~~~~~~~~~~~~rqA~vP~ga~~il~N~~GtAPG~~i~----~v~~LPG~~vP~-m~~m~~-~v~p~l~~ 71 (153)
-+||.+++..+++.+.|||++|+|| ++|+|+.|+|||++++ ++|+||| ||+ |++||+ .+.|+|++
T Consensus 99 ~~~~~~~~~~~~~~~~r~a~~p~ga-~~i~N~~G~apg~~~~~~~~~i~~lPG--~P~e~~~m~~~~~~~~l~~ 169 (170)
T cd00885 99 EARFARRGREMTEANLKQAMLPEGA-TLLPNPVGTAPGFSVEHNGKNVFLLPG--VPSEMKPMLEEEVLPRLRE 169 (170)
T ss_pred HHHHHhcCCccChhhhheecCCCCC-EECcCCCCEeeEEEEEeCCeEEEEECC--ChHHHHHHHHHHHHHHHhc
Confidence 3456666777899999999999999 9999999999999997 6999999 999 999998 68898853
No 8
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=94.23 E-value=0.024 Score=41.38 Aligned_cols=34 Identities=21% Similarity=0.090 Sum_probs=24.5
Q ss_pred CCCcccEEEEc-----eEEEecCCCCch-hHHHHHH-HHHhHH
Q 031793 35 DKLLLPLIKCQ-----NVIILTATNVTE-LDKEWNC-LIELLR 70 (153)
Q Consensus 35 ~~GtAPG~~i~-----~v~~LPG~~vP~-m~~m~~~-v~p~l~ 70 (153)
|.++++++.+. .+|+||| .|. ++.+|+. +.|.|+
T Consensus 103 p~~~~~~~~~~~~~~~~v~~LPG--~P~~~~~~~~~~v~P~L~ 143 (144)
T PF00994_consen 103 PTGLAPGAYLSRKGGKPVFGLPG--NPVAAKVMLEVLVLPLLR 143 (144)
T ss_dssp TCETEGGGGGTSSETTEEEEE-S--SHHHHHHHHHHHHHHHHH
T ss_pred ccceeeEEEeeCCCCcEEEEcCC--CHHHHHHHHHHHHHHhcC
Confidence 34566665553 4999999 999 9999986 459885
No 9
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=91.19 E-value=0.26 Score=35.45 Aligned_cols=44 Identities=18% Similarity=0.125 Sum_probs=32.8
Q ss_pred cccceeccCCCceeeeCCCCcccEEEEceEEEecCCCCch-hHHHHH
Q 031793 18 PFQMALLPEGTTELLHHDKLLLPLIKCQNVIILTATNVTE-LDKEWN 63 (153)
Q Consensus 18 ~~rqA~vP~ga~~il~N~~GtAPG~~i~~v~~LPG~~vP~-m~~m~~ 63 (153)
..++++.|.+.+.+..|+.+.++|+.-+-||.||| .|. +..+|+
T Consensus 89 ~~~~~~~Pg~~~~~~~~~~~~~~g~~~~~i~~LPG--~P~~~~~~~~ 133 (135)
T smart00852 89 GFGEAMRPGGAPTVLANLSGTAPGFRGKLVFGLPG--SPVAARAMLE 133 (135)
T ss_pred ChhhhhcccCCccccccccCcCCeEeCcEEEECCC--CHHHHHHHHH
Confidence 45678888776233458889899875345999999 998 887775
No 10
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=90.61 E-value=0.26 Score=36.11 Aligned_cols=33 Identities=6% Similarity=-0.134 Sum_probs=26.6
Q ss_pred eeeeCCCCcccEEEEce--EEEecCCCCch-hHHHHHH
Q 031793 30 ELLHHDKLLLPLIKCQN--VIILTATNVTE-LDKEWNC 64 (153)
Q Consensus 30 ~il~N~~GtAPG~~i~~--v~~LPG~~vP~-m~~m~~~ 64 (153)
.+..+|-+++.+..+++ |+.||| .|. ...+|+.
T Consensus 105 ~~~~~PG~~~~~~~~~~~~v~~LPG--~P~aa~~~~~~ 140 (144)
T TIGR00177 105 AVLSRPGKPATAGVRGGTLIFGLPG--NPVSALVTFEV 140 (144)
T ss_pred hhhCCCCCceEEEEECCEEEEECCC--CHHHHHHHHHH
Confidence 55667888888777764 999999 998 9898874
No 11
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=85.62 E-value=5.9 Score=27.09 Aligned_cols=60 Identities=13% Similarity=0.158 Sum_probs=44.1
Q ss_pred EEEE-eCCChhhhHHHHHHhhhhC-CC---cEEEEccccCC--eeEEEEEEecCHHHHHHHHHHHHH
Q 031793 83 KSLT-TNLSDLEAAQPLSKLCLEF-PD---LHIGCYRKSRQ--GPLIISFEGKDQARIEAAIESLFK 142 (153)
Q Consensus 83 ~~l~-~g~~ES~l~~~L~~l~~~~-~~---v~ig~yp~~~~--~~v~l~~~g~~~~~~~~~~~~l~~ 142 (153)
.+++ .|....++++.+-++..++ |+ .++..-|+..+ ..|+|++++.|.+.++.+.+.|.+
T Consensus 16 F~~KVmG~a~~~l~~~vv~vvqr~ap~~~~~~~~~k~SSkGnY~svsI~i~A~~~EQ~e~ly~eL~~ 82 (90)
T COG2921 16 FTYKVMGAAGPELEDQVVEVVQRHAPGDYTPRVSWKPSSKGNYLSVSITIRATNIEQVEALYRELRK 82 (90)
T ss_pred ceeeehcccchhHHHHHHHHHHHHCCcccCceeeeccCCCCceEEEEEEEEECCHHHHHHHHHHHhh
Confidence 3455 6888888888888876666 42 34555565544 359999999999999999888875
No 12
>cd07027 RNAP_RPB11_like RPB11 subunit of RNA polymerase. The eukaryotic RPB11 subunit of RNA polymerase (RNAP), as well as its archaeal (L subunit) and bacterial (alpha subunit) counterparts, is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. At least three distinct RNAP complexes are found in eukaryotic nuclei: RNAP I, RNAP II, and RNAP III, for the synthesis of ribosomal RNA precursor, mRNA precursor, and 5S and tRNA, respectively. A single distinct RNAP complex is found in prokaryotes and archaea, which may be responsible for the synthesis of all RNAs. The assembly of the two largest eukaryotic RNAP subunits that provide most of the enzyme's catalytic functions depends on the presence of RPB3/RPB11 heterodimer subunits. This is also true for the archaeal (D/
Probab=73.32 E-value=17 Score=24.24 Aligned_cols=54 Identities=13% Similarity=0.131 Sum_probs=37.7
Q ss_pred hhhHHHHHHhhhhCCCcEEEEccccC----CeeEEEEEEe-cC-HHHHHHHHHHHHHHcc
Q 031793 92 LEAAQPLSKLCLEFPDLHIGCYRKSR----QGPLIISFEG-KD-QARIEAAIESLFKKFH 145 (153)
Q Consensus 92 S~l~~~L~~l~~~~~~v~ig~yp~~~----~~~v~l~~~g-~~-~~~~~~~~~~l~~~l~ 145 (153)
-.+...|+....+.|+|.++.|-... ...++|..++ .+ .+.+.+|++.|.+.+.
T Consensus 20 HTLgNlLr~~L~~~~~V~fAgY~vpHPl~~~~~lrI~T~~~~~P~~al~~a~~~l~~~~~ 79 (83)
T cd07027 20 HTLGNLLREELLKDDQVDFARYYIKHPVIDKIQIRIQTKSGIKPKDALKRAVNKLSKLYE 79 (83)
T ss_pred chHHHHHHHHHhcCCCeeEEEEecCCCCCCccEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 45888888877788999988886422 2357777765 34 4567888888776653
No 13
>PRK00907 hypothetical protein; Provisional
Probab=72.07 E-value=29 Score=23.77 Aligned_cols=59 Identities=17% Similarity=0.193 Sum_probs=42.7
Q ss_pred EEE-eCCChhhhHHHHHHhhhhC-C---CcEEEEccccCCe--eEEEEEEecCHHHHHHHHHHHHH
Q 031793 84 SLT-TNLSDLEAAQPLSKLCLEF-P---DLHIGCYRKSRQG--PLIISFEGKDQARIEAAIESLFK 142 (153)
Q Consensus 84 ~l~-~g~~ES~l~~~L~~l~~~~-~---~v~ig~yp~~~~~--~v~l~~~g~~~~~~~~~~~~l~~ 142 (153)
.++ .|.....+.+.+.++...+ | .-.+...++..+. .+++++...+++.++++.+.|.+
T Consensus 19 piKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~ats~eQld~iY~~L~~ 84 (92)
T PRK00907 19 ELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAESREQYDAAHQALRD 84 (92)
T ss_pred eEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEECCHHHHHHHHHHHhh
Confidence 355 6887788888887775554 4 3456667766543 48888888899999998888765
No 14
>cd07029 RNAP_I_III_AC19 AC19 subunit of Eukaryotic RNA polymerase (RNAP) I and RNAP III. The eukaryotic AC19 subunit of RNA polymerase (RNAP) I and RNAP III is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. At least three distinct RNAP complexes are found in eukaryotic nuclei: RNAP I, RNAP II, and RNAP III. RNAP I is responsible for the synthesis of ribosomal RNA precursor, while RNAP III functions in the synthesis of 5S and tRNA. The AC19 subunit is the equivalent of the RPB11 subunit of RNAP II. The RPB11 subunit heterodimerizes with the RPB3 subunit, and together with RPB10 and RPB12, anchors the two largest subunits, RPB1 and RPB2, and stabilizes their association. The homology of AC19 to RPB11 suggests a similar function. The AC19 subunit is likely to ass
Probab=68.96 E-value=26 Score=23.53 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=36.6
Q ss_pred hhhHHHHHHhhhhCCCcEEEEccccC----CeeEEEEEEe-cC-HHHHHHHHHHHHHHc
Q 031793 92 LEAAQPLSKLCLEFPDLHIGCYRKSR----QGPLIISFEG-KD-QARIEAAIESLFKKF 144 (153)
Q Consensus 92 S~l~~~L~~l~~~~~~v~ig~yp~~~----~~~v~l~~~g-~~-~~~~~~~~~~l~~~l 144 (153)
-.+...|+....+.|+|.++.|-... ...++|..++ .+ .+.+.+|.+.|...+
T Consensus 20 HTLgNlLr~~L~~~p~V~fagY~vpHPl~~~~~lriqT~~~~~p~~al~~a~~~l~~~~ 78 (85)
T cd07029 20 HTLGNSLRYVIMKNPEVEFCGYSIPHPSENKINLRIQTKGGEPAVDVLKKGLEDLEQIC 78 (85)
T ss_pred cchHHHHHHHHhhCCCceEEeecccCCCCCccEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 45888898887788999999986432 2357777775 34 355677777766544
No 15
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=65.64 E-value=6.3 Score=30.57 Aligned_cols=15 Identities=13% Similarity=0.297 Sum_probs=14.2
Q ss_pred EEEecCCCCch-hHHHHH
Q 031793 47 VIILTATNVTE-LDKEWN 63 (153)
Q Consensus 47 v~~LPG~~vP~-m~~m~~ 63 (153)
|++||| .|. ++.+|+
T Consensus 129 I~nLPG--Sp~a~~~~le 144 (193)
T PRK09417 129 IINLPG--QPKSIKETLE 144 (193)
T ss_pred EEECCC--CHHHHHHHHH
Confidence 889999 999 999998
No 16
>COG1761 RPB11 DNA-directed RNA polymerase, subunit L [Transcription]
Probab=65.19 E-value=32 Score=23.93 Aligned_cols=54 Identities=17% Similarity=0.247 Sum_probs=36.0
Q ss_pred hhhHHHHHHhhhhCCCcEEEEccccC----CeeEEEEEEec-CH-HHHHHHHHHHHHHcc
Q 031793 92 LEAAQPLSKLCLEFPDLHIGCYRKSR----QGPLIISFEGK-DQ-ARIEAAIESLFKKFH 145 (153)
Q Consensus 92 S~l~~~L~~l~~~~~~v~ig~yp~~~----~~~v~l~~~g~-~~-~~~~~~~~~l~~~l~ 145 (153)
-++...|.....+.++|.++.|--.. ...++|...+. |. +.+.+|+..+.+.+.
T Consensus 26 HTL~NlL~~~L~~d~~V~~a~Y~i~HP~~~~~~i~Ikt~~~~dp~~aL~~A~~~i~~~~~ 85 (99)
T COG1761 26 HTLGNLLREELLKDEDVEFAAYSIPHPLIDNPKIRIKTKGGVDPKEALKRAARKILKDLE 85 (99)
T ss_pred chHHHHHHHHHhCCCCeeEEEEeCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 45788888777777899999775322 22477777766 53 556777776665543
No 17
>PRK02047 hypothetical protein; Provisional
Probab=61.59 E-value=48 Score=22.45 Aligned_cols=58 Identities=16% Similarity=0.171 Sum_probs=40.9
Q ss_pred EE-eCCChhhhHHHHHHhhhhC-CC---cEEEEccccCCe--eEEEEEEecCHHHHHHHHHHHHH
Q 031793 85 LT-TNLSDLEAAQPLSKLCLEF-PD---LHIGCYRKSRQG--PLIISFEGKDQARIEAAIESLFK 142 (153)
Q Consensus 85 l~-~g~~ES~l~~~L~~l~~~~-~~---v~ig~yp~~~~~--~v~l~~~g~~~~~~~~~~~~l~~ 142 (153)
++ .|-.+..+.+.+.++...+ |+ -.+.+-++..+. .+.+++...+++.++++.+.|.+
T Consensus 19 ~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~v~s~eq~~~iY~~L~~ 83 (91)
T PRK02047 19 IKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVRATSREQLDNIYRALTG 83 (91)
T ss_pred EEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEEECCHHHHHHHHHHHhh
Confidence 44 5777777788887776655 33 446677766543 47788888889988888888765
No 18
>PRK00341 hypothetical protein; Provisional
Probab=60.59 E-value=50 Score=22.38 Aligned_cols=59 Identities=5% Similarity=0.036 Sum_probs=40.9
Q ss_pred EE-eCCChhhhHHHHHHhhhhCC---CcEEEEccccCCe--eEEEEEEecCHHHHHHHHHHHHHH
Q 031793 85 LT-TNLSDLEAAQPLSKLCLEFP---DLHIGCYRKSRQG--PLIISFEGKDQARIEAAIESLFKK 143 (153)
Q Consensus 85 l~-~g~~ES~l~~~L~~l~~~~~---~v~ig~yp~~~~~--~v~l~~~g~~~~~~~~~~~~l~~~ 143 (153)
++ .|.....+.+.+.++..++- .-.+..-++.++. .+.+++...+++.++++.+.|.+.
T Consensus 20 ~KViG~~~~~~~~~V~~iv~~~~~~~~~~~~~k~Ss~GkY~S~tv~i~~~s~~q~~~iy~~L~~~ 84 (91)
T PRK00341 20 IKVIGDTGVGFKDLVIEILQKHADVDLSTLAERQSSNGKYTTVQLHIVATDEDQLQDINSALRAT 84 (91)
T ss_pred EEEEEcCchhHHHHHHHHHHHhCCCcccceeeccCCCCEEEEEEEEEEECCHHHHHHHHHHHhhC
Confidence 45 68777788888877765542 3345556655443 478888888999889888888653
No 19
>PF00408 PGM_PMM_IV: Phosphoglucomutase/phosphomannomutase, C-terminal domain; InterPro: IPR005843 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents the C-terminal domain alpha-D-phosphohexomutase enzymes.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 1KFQ_B 1KFI_A 3PDK_B 2F7L_A 1TUO_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=59.63 E-value=25 Score=22.33 Aligned_cols=37 Identities=11% Similarity=0.167 Sum_probs=28.2
Q ss_pred cEEEEccccCCeeEEEEEEecCHHHHHHHHHHHHHHc
Q 031793 108 LHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKF 144 (153)
Q Consensus 108 v~ig~yp~~~~~~v~l~~~g~~~~~~~~~~~~l~~~l 144 (153)
..+-..|+..+-.+|+.+++.+.+.+++..+.+.+.+
T Consensus 36 ~~l~vR~SgTEP~iRv~~Ea~~~~~~~~~~~~i~~~i 72 (73)
T PF00408_consen 36 WRLLVRPSGTEPKIRVYVEAPDEEELEEIAEEIAEAI 72 (73)
T ss_dssp EEEEEEEESSSSEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCceEEEEEEeCCHHHHHHHHHHHHHhh
Confidence 3344778665567999999999998888888777654
No 20
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=57.09 E-value=12 Score=27.98 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=19.3
Q ss_pred EEEecCCCCch-hHHHHH-HHHHhHHh
Q 031793 47 VIILTATNVTE-LDKEWN-CLIELLRS 71 (153)
Q Consensus 47 v~~LPG~~vP~-m~~m~~-~v~p~l~~ 71 (153)
||.||| .|. ...+|+ .+.|.|..
T Consensus 127 v~~LPG--~P~aa~~~~~~~v~P~l~~ 151 (163)
T TIGR02667 127 VFCLPG--STGACRTAWDKIIAAQLDA 151 (163)
T ss_pred EEECCC--CHHHHHHHHHHHHHHHHHH
Confidence 899999 998 888887 47888854
No 21
>PF00936 BMC: BMC domain; InterPro: IPR000249 This domain is found in a variety of polyhedral organelle shell proteins, including CsoS1A, CsoS1B and CsoS1C of Thiobacillus neapolitanus (Halothiobacillus neapolitanus) and their orthologs from other bacteria. Some autotrophic and non-autotrophic organisms form polyhedral organelles, carboxysomes/enterosomes []. The best studied is the carboxysome of Halothiobacillus neapolitanus, which is composed of at least 9 proteins: six shell proteins, CsoS1A, CsoS1B, CsoS1C, Cso2A, Cso2B and CsoS3 (carbonic anhydrase) [], one protein of unknown function and the large and small subunits of RuBisCo (CbbL and Cbbs). Carboxysomes appear to be approximately 120 nm in diameter, most often observed as regular hexagons, with a solid interior bounded by a unilamellar protein shell. The interior is filled with type I RuBisCo, which is composed of 8 large subunits and 8 small subunits; it accounts for 60% of the carboxysomal protein, which amounts to approximately 300 molecules of enzyme per carboxysome. Carboxysomes are required for autotrophic growth at low CO2 concentrations and are thought to function as part of a CO2-concentrating mechanism [, ]. Polyhedral organelles, enterosomes, from non-autotrophic organisms are involved in coenzyme B12-dependent 1,2-propanediol utilisation (e.g., in Salmonella enterica []) and ethanolamine utilisation (e.g., in Salmonella typhimurium []). Genes needed for enterosome formation are located in the 1,2-propanediol utilisation pdu [, ] or ethanolamine utilisation eut [, ] operons, respectively. Although enterosomes of non-autotrophic organisms are apparently related to carboxysomes structurally, a functional relationship is uncertain. A role in CO2 concentration, similar to that of the carboxysome, is unlikely since there is no known association between CO2 and coenzyme B12-dependent 1,2-propanediol or ethanolamine utilisation []. It seems probable that entrosomes help protect the cells from reactive aldehyde species in the degradation pathways of 1,2-propanediol and ethanolamine [].; PDB: 3F56_C 3FCH_A 3I87_A 3GFH_B 3I82_A 3MPV_A 3IO0_A 4AXJ_B 3N79_A 2G13_A ....
Probab=56.26 E-value=51 Score=21.30 Aligned_cols=44 Identities=14% Similarity=0.185 Sum_probs=32.1
Q ss_pred CCcEEEEccccCCeeEEEEEEecCHHHHHHHHHHHHHHcccCcee
Q 031793 106 PDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHRGAFS 150 (153)
Q Consensus 106 ~~v~ig~yp~~~~~~v~l~~~g~~~~~~~~~~~~l~~~l~~~i~~ 150 (153)
-+|++..+-....+.+.+.+.| |.+.++.+.+...+..+..+++
T Consensus 25 a~V~l~~~~~~~~g~~~~~i~G-~vs~V~~Av~a~~~~~~~~~v~ 68 (75)
T PF00936_consen 25 ANVELVEIELICGGKVTVIITG-DVSAVKAAVDAAEEAAGKKLVS 68 (75)
T ss_dssp SSEEEEEEEEESTTEEEEEEEE-SHHHHHHHHHHHHHHHHHTEEE
T ss_pred CCEEEEEEEecCCCeEEEEEEE-CHHHHHHHHHHHHHHHhhceee
Confidence 3888877776656778888888 7777778877777776665444
No 22
>cd06926 RNAP_II_RPB11 RPB11 subunit of Eukaryotic RNA polymerase II. The eukaryotic RPB11 subunit of RNA polymerase (RNAP) II is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. At least three distinct RNAP complexes are found in eukaryotic nuclei: RNAP I, RNAP II, and RNAP III. RNAP II is responsible for the synthesis of mRNA precursor. The RPB11 subunit heterodimerizes with the RPB3 subunit, and together with RPB10 and RPB12, anchors the two largest subunits, RPB1 and RPB2, and stabilizes their association.
Probab=56.08 E-value=55 Score=22.26 Aligned_cols=53 Identities=19% Similarity=0.264 Sum_probs=36.3
Q ss_pred hhhHHHHHHhhhhCCCcEEEEccccC----CeeEEEEEEe-cC-HHHHHHHHHHHHHHc
Q 031793 92 LEAAQPLSKLCLEFPDLHIGCYRKSR----QGPLIISFEG-KD-QARIEAAIESLFKKF 144 (153)
Q Consensus 92 S~l~~~L~~l~~~~~~v~ig~yp~~~----~~~v~l~~~g-~~-~~~~~~~~~~l~~~l 144 (153)
-.|...|+....+.|+|.++.|.... ...++|..++ .+ .+.+.+|++.|.+.+
T Consensus 28 HTLgNlLr~~L~~~~~V~fagY~vpHPl~~~~~l~i~t~~~~~p~~al~~a~~~l~~~~ 86 (93)
T cd06926 28 HTLGNLLRMQLLKDPNVLFAGYKVPHPLEHKIELRIQTDGSITPKEALKNAITDLISEL 86 (93)
T ss_pred chHHHHHHHHHhcCCCeeEEeeccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 45888888877778999999987432 2346666665 23 355677777776654
No 23
>PF09883 DUF2110: Uncharacterized protein conserved in archaea (DUF2110); InterPro: IPR016757 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=55.51 E-value=28 Score=27.71 Aligned_cols=56 Identities=14% Similarity=0.103 Sum_probs=32.8
Q ss_pred eCCChhhhHHHHHHhhhhCC--CcEEEEccccCCeeEEEEEEecCHHHHHHHHHHHHHHccc
Q 031793 87 TNLSDLEAAQPLSKLCLEFP--DLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHR 146 (153)
Q Consensus 87 ~g~~ES~l~~~L~~l~~~~~--~v~ig~yp~~~~~~v~l~~~g~~~~~~~~~~~~l~~~l~~ 146 (153)
.|=.|+.++..=+.+.+... +|++..-... ...++++++|+|++ .+...|++.++.
T Consensus 8 yGd~~r~ld~L~~~v~n~lgdLdV~~~i~~~~-~~wv~vtl~GeD~e---va~Nll~eefGe 65 (225)
T PF09883_consen 8 YGDAERALDSLRSLVENDLGDLDVEWDIGITK-DDWVKVTLEGEDEE---VAANLLREEFGE 65 (225)
T ss_pred eccHHHHHHHHHHHHHHhhcCeeEEEEecccc-CCceEEEEecCcHH---HHHHHHHHHhCC
Confidence 34336665443333343344 4555443322 46799999998876 566677777764
No 24
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=54.49 E-value=7.2 Score=27.89 Aligned_cols=20 Identities=10% Similarity=0.200 Sum_probs=16.4
Q ss_pred EEEecCCCCch-hHHHHHH-HHHh
Q 031793 47 VIILTATNVTE-LDKEWNC-LIEL 68 (153)
Q Consensus 47 v~~LPG~~vP~-m~~m~~~-v~p~ 68 (153)
|+.||| .|. .+.+|.. +.|.
T Consensus 111 i~~LPG--~p~a~~~~~~~~v~p~ 132 (133)
T cd00758 111 IINLPG--SPKSALTTFEALVLPA 132 (133)
T ss_pred EEECCC--CHHHHHHHHHHhheec
Confidence 999999 998 8888874 5664
No 25
>PF04359 DUF493: Protein of unknown function (DUF493); InterPro: IPR007454 This family includes several proteins of uncharacterised function.; PDB: 1RWU_A 2JOQ_A 2H9Z_A.
Probab=51.92 E-value=39 Score=22.24 Aligned_cols=59 Identities=8% Similarity=0.157 Sum_probs=39.5
Q ss_pred EEE-eCCChhhhHHHHHHhhhhC----CCcEEEEccccCCe--eEEEEEEecCHHHHHHHHHHHHH
Q 031793 84 SLT-TNLSDLEAAQPLSKLCLEF----PDLHIGCYRKSRQG--PLIISFEGKDQARIEAAIESLFK 142 (153)
Q Consensus 84 ~l~-~g~~ES~l~~~L~~l~~~~----~~v~ig~yp~~~~~--~v~l~~~g~~~~~~~~~~~~l~~ 142 (153)
.++ +|..+..+.+.+.++..++ .+..+-.-++.++. .+.+++...+++.++++.+.|.+
T Consensus 12 ~~KvIg~~~~~~~~~v~~iv~~~~~~~~~~~~~~k~S~~GkY~Svtv~v~v~s~eq~~~iy~~L~~ 77 (85)
T PF04359_consen 12 PFKVIGKAEEDFVEAVKEIVEKHAPEFDDEKVSSKPSSKGKYVSVTVSVTVESAEQVDAIYRELKA 77 (85)
T ss_dssp EEEEEEC-STTHHHHHCCCCCCHSS--SSEEEEECCSTTSSEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred eEEEEEECcHhHHHHHHHHHHHhCCcCccCceEEecCCCCeEEEEEEEEEECCHHHHHHHHHHhcc
Confidence 355 6777777777787664432 35566777655443 47777778889988888887765
No 26
>PRK01146 DNA-directed RNA polymerase subunit L; Provisional
Probab=51.18 E-value=72 Score=21.32 Aligned_cols=54 Identities=19% Similarity=0.206 Sum_probs=37.4
Q ss_pred hhhHHHHHHhhhhCCCcEEEEccccCC----eeEEEEEEe-cC-HHHHHHHHHHHHHHcc
Q 031793 92 LEAAQPLSKLCLEFPDLHIGCYRKSRQ----GPLIISFEG-KD-QARIEAAIESLFKKFH 145 (153)
Q Consensus 92 S~l~~~L~~l~~~~~~v~ig~yp~~~~----~~v~l~~~g-~~-~~~~~~~~~~l~~~l~ 145 (153)
-.|...|+....+.|+|.++.|-.... ..++|...+ .+ .+.+.+|++.|.+.+.
T Consensus 22 HTlgNlLr~~L~~~~~V~fAgY~vpHPl~~~~~lrIqt~~~~~p~~al~~a~~~L~~~~~ 81 (85)
T PRK01146 22 HTLMNLLKEELLEDPGVEAASYDIDHPLISNPVLKIKTDGGIDPLEALKEAAKRIIDLCD 81 (85)
T ss_pred chHHHHHHHHHhcCCCeeEEEeecCCCCCCccEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 458888888777889999998864432 246777663 34 3556888887776653
No 27
>cd06927 RNAP_L L subunit of Archaeal RNA polymerase. The archaeal L subunit of RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The assembly of the two largest archaeal RNAP subunits that provide most of the enzyme's catalytic functions depends on the presence of the archaeal D/L heterodimer.
Probab=49.67 E-value=75 Score=21.12 Aligned_cols=54 Identities=19% Similarity=0.217 Sum_probs=37.6
Q ss_pred hhhHHHHHHhhhhCCCcEEEEccccCC----eeEEEEEEe-cC-HHHHHHHHHHHHHHcc
Q 031793 92 LEAAQPLSKLCLEFPDLHIGCYRKSRQ----GPLIISFEG-KD-QARIEAAIESLFKKFH 145 (153)
Q Consensus 92 S~l~~~L~~l~~~~~~v~ig~yp~~~~----~~v~l~~~g-~~-~~~~~~~~~~l~~~l~ 145 (153)
-.+...|+....+.|+|.++.|-.... ..++|...| .+ .+.+.+|.+.|.+.+.
T Consensus 20 HTlgNlLr~~L~~~~~V~fAgY~vpHPl~~~~~lrIqT~~~~~p~~al~~a~~~l~~~~~ 79 (83)
T cd06927 20 HTLLNLLKEELLRDPGVKVASYDIEHPLLSNPVLKIKTDGGVDPLEALKEAAKRLIDLCE 79 (83)
T ss_pred chHHHHHHHHHhcCCCeEEEEeecCCCCCCccEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 458888888777789999998864332 347777766 33 3567888888776653
No 28
>PF13656 RNA_pol_L_2: RNA polymerase Rpb3/Rpb11 dimerisation domain; PDB: 2Y0S_L 1I3Q_K 4A3D_K 2JA8_K 3GTP_K 1R9T_K 3PO2_K 4A3J_K 3HOX_K 2JA7_K ....
Probab=48.44 E-value=61 Score=21.17 Aligned_cols=53 Identities=25% Similarity=0.307 Sum_probs=34.0
Q ss_pred hhhHHHHHHhhhhCCCcEEEEccccC--Ce--eEEEEEEec-CH-HHHHHHHHHHHHHc
Q 031793 92 LEAAQPLSKLCLEFPDLHIGCYRKSR--QG--PLIISFEGK-DQ-ARIEAAIESLFKKF 144 (153)
Q Consensus 92 S~l~~~L~~l~~~~~~v~ig~yp~~~--~~--~v~l~~~g~-~~-~~~~~~~~~l~~~l 144 (153)
-.|...|+....+.|+|.++.|-... .. .++|..+|. +. +.+.++.+.+.+.+
T Consensus 12 HTlgNlLr~~L~~~p~V~fagY~vpHPl~~~i~l~Iqt~~~~~p~~~l~~a~~~l~~~~ 70 (77)
T PF13656_consen 12 HTLGNLLRYELLKDPDVEFAGYRVPHPLENKINLRIQTKGGITPIEALKKALEDLIKIC 70 (77)
T ss_dssp HHHHHHHHHCCTTSTTEEEEEEEESETTSSEEEEEEEESTTS-HHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhhCCCeEEEEeccCCCCCCceEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 45788888877777999998885332 33 355655554 33 45577777666544
No 29
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=47.89 E-value=21 Score=26.08 Aligned_cols=23 Identities=9% Similarity=0.209 Sum_probs=17.5
Q ss_pred EEEecCCCCch-hHHHHHHHHHhHHh
Q 031793 47 VIILTATNVTE-LDKEWNCLIELLRS 71 (153)
Q Consensus 47 v~~LPG~~vP~-m~~m~~~v~p~l~~ 71 (153)
|+.||| .|. ....|+.+.|.|+.
T Consensus 124 v~~LPG--~P~aa~~~~~~v~P~l~~ 147 (152)
T cd00886 124 IFNLPG--SPKAVREALEVILPELPH 147 (152)
T ss_pred EEECCC--CHHHHHHHHHHHHHHHHH
Confidence 899999 997 65666558888753
No 30
>PRK04998 hypothetical protein; Provisional
Probab=47.54 E-value=83 Score=20.99 Aligned_cols=56 Identities=16% Similarity=0.185 Sum_probs=36.5
Q ss_pred eCCChhhhHHHHHHhhhhC-CCc-EEEEccccCCe--eEEEEEEecCHHHHHHHHHHHHH
Q 031793 87 TNLSDLEAAQPLSKLCLEF-PDL-HIGCYRKSRQG--PLIISFEGKDQARIEAAIESLFK 142 (153)
Q Consensus 87 ~g~~ES~l~~~L~~l~~~~-~~v-~ig~yp~~~~~--~v~l~~~g~~~~~~~~~~~~l~~ 142 (153)
.|-.+.++.+.+.++..++ |+. .+.+.++..+. .+.+++...+++.++++.+.|.+
T Consensus 21 ig~~~~~~~~~v~~v~~~~~~~~~~~~~r~S~~GkY~Svtv~v~v~s~eq~~~iY~~L~~ 80 (88)
T PRK04998 21 MGLARPELVDQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSITITATSIEQVETLYEELAK 80 (88)
T ss_pred EEeCcHhHHHHHHHHHHHhCCCCCCceEccCCCCEEEEEEEEEEECCHHHHHHHHHHHhc
Confidence 5666666777776665444 432 25566655442 47777777888888888887765
No 31
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=47.22 E-value=98 Score=23.04 Aligned_cols=29 Identities=17% Similarity=0.127 Sum_probs=23.2
Q ss_pred EeCCChhhhHHHHHHhhhhCCCcEEE-Ecc
Q 031793 86 TTNLSDLEAAQPLSKLCLEFPDLHIG-CYR 114 (153)
Q Consensus 86 ~~g~~ES~l~~~L~~l~~~~~~v~ig-~yp 114 (153)
.+|-.|..+++..+.+...+|++.|. +++
T Consensus 53 llG~~~~~~~~~~~~l~~~yP~l~ivg~~~ 82 (172)
T PF03808_consen 53 LLGGSEEVLEKAAANLRRRYPGLRIVGYHH 82 (172)
T ss_pred EEeCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 37888888888888999999988765 444
No 32
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=45.18 E-value=21 Score=29.76 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=18.3
Q ss_pred EEEecCCCCch-hHHHHHHHHHhHH
Q 031793 47 VIILTATNVTE-LDKEWNCLIELLR 70 (153)
Q Consensus 47 v~~LPG~~vP~-m~~m~~~v~p~l~ 70 (153)
||.||| .|. ....|+.++|.|.
T Consensus 278 I~~LPG--~P~aa~~~~~~llp~l~ 300 (312)
T PRK03604 278 VVALPG--SPGGASDALAVLLPALF 300 (312)
T ss_pred EEECCC--CHHHHHHHHHHHHHHHH
Confidence 899999 998 7788887777763
No 33
>PRK15468 carboxysome structural protein EutS; Provisional
Probab=43.55 E-value=64 Score=22.90 Aligned_cols=58 Identities=19% Similarity=0.290 Sum_probs=34.6
Q ss_pred EEeCCChhhhHHHHHHhhhhCCCcEEEEccccCCeeEEEEEEecC-HHHHHHHHHHHHHHcc
Q 031793 85 LTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKD-QARIEAAIESLFKKFH 145 (153)
Q Consensus 85 l~~g~~ES~l~~~L~~l~~~~~~v~ig~yp~~~~~~v~l~~~g~~-~~~~~~~~~~l~~~l~ 145 (153)
++..=+|..+-. .|+..+..+|++|+.=++ .+.+.++.+-.+ +..++++.+.+++.|+
T Consensus 44 lTiTP~E~aIIA--aDIA~Kaa~V~igF~DRF-sGslvitGdvs~Ve~Al~~V~~~l~~~L~ 102 (111)
T PRK15468 44 MTLTPGETAMIA--GDLALKAADVHIGFLDRF-SGALVIYGSVGAVEEALSQTVSGLGRLLN 102 (111)
T ss_pred EEeCcchHHHHH--HHhhhhccCcEEeeeecc-ceeEEEEccHHHHHHHHHHHHHHHHhhcC
Confidence 344445665433 677667779999999987 555666654222 3334555555555553
No 34
>COG1925 FruB Phosphotransferase system, HPr-related proteins [Carbohydrate transport and metabolism]
Probab=42.11 E-value=35 Score=23.09 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=16.0
Q ss_pred CeeEEEEEEecCHHH-HHHHHHHHHH
Q 031793 118 QGPLIISFEGKDQAR-IEAAIESLFK 142 (153)
Q Consensus 118 ~~~v~l~~~g~~~~~-~~~~~~~l~~ 142 (153)
+..++|+++|.|+++ +++..+.+.+
T Consensus 58 G~~i~i~a~G~de~~Al~aL~~li~~ 83 (88)
T COG1925 58 GDEIELSAEGEDEEEALEALSELIES 83 (88)
T ss_pred CCEEEEEEeCccHHHHHHHHHHHHHh
Confidence 446999999999764 3444444443
No 35
>COG1839 Uncharacterized conserved protein [Function unknown]
Probab=40.50 E-value=1.6e+02 Score=22.14 Aligned_cols=54 Identities=24% Similarity=0.394 Sum_probs=35.5
Q ss_pred HHhhhhCCCcEEEEccccCCeeEEEEEEecCHHHHHHHHHHHHHHcccCceeee
Q 031793 99 SKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHRGAFSEV 152 (153)
Q Consensus 99 ~~l~~~~~~v~ig~yp~~~~~~v~l~~~g~~~~~~~~~~~~l~~~l~~~i~~~~ 152 (153)
+.+....|++++|.--.-..++--++-+|.|++..+.|.+-.++.-..+.|..+
T Consensus 34 ealvt~vP~~kfgiAf~EAsg~rLvR~~GND~eL~~lA~ena~~I~AGHvFVI~ 87 (162)
T COG1839 34 EALVTAVPGLKFGIAFNEASGPRLVRYTGNDEELVKLAIENALKIGAGHVFVIL 87 (162)
T ss_pred HHHHhcCCCceEEEEeecccCCeeEEecCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 334445688888776543344444667788888888888777776666666543
No 36
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=40.04 E-value=59 Score=19.85 Aligned_cols=52 Identities=21% Similarity=0.118 Sum_probs=29.0
Q ss_pred CChhhhHHHHHHhhhhCCCcEEEEccccCCeeEEEEEEe-cCHHHHHHHHHHHH
Q 031793 89 LSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEG-KDQARIEAAIESLF 141 (153)
Q Consensus 89 ~~ES~l~~~L~~l~~~~~~v~ig~yp~~~~~~v~l~~~g-~~~~~~~~~~~~l~ 141 (153)
-.++...+.+.++....++..+ .....+...-++.+.. .+.++++++...|+
T Consensus 13 ~~~~~A~~~~~~l~~~g~~~~~-~~~~~~~~~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 13 SSEENAERLLAKLKKKGPDAYV-VQVSKGGPWYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp S-HHHHHHHHHHHHHHT------EEEEEETTCEEEEECCECTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCcce-EEEecCCceEEEEECCCCCHHHHHHHHHHHh
Confidence 3667778888888777665544 2222223334455433 46677788888888
No 37
>COG4810 EutS Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=38.85 E-value=67 Score=22.64 Aligned_cols=57 Identities=16% Similarity=0.237 Sum_probs=32.7
Q ss_pred EEeCCChhhhHHHHHHhhhhCCCcEEEEccccCCeeEEEEEEec-CHHHHHHHHHHHHHHc
Q 031793 85 LTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGK-DQARIEAAIESLFKKF 144 (153)
Q Consensus 85 l~~g~~ES~l~~~L~~l~~~~~~v~ig~yp~~~~~~v~l~~~g~-~~~~~~~~~~~l~~~l 144 (153)
+...=+|..+ +-.++..+..+|+||++-++ .+.+-|+.+-. -++.+.+....|.+.+
T Consensus 54 lTiTP~Eaai--Ia~DiA~Ksg~v~iGFlDRF-sGalvltGdv~aVE~aLkqv~~~L~e~l 111 (121)
T COG4810 54 LTITPGEAAI--IAGDIATKSGDVHIGFLDRF-SGALVLTGDVGAVEEALKQVVSGLGELL 111 (121)
T ss_pred EEecCchhhh--hhhhhhcccCceEEeeeecc-cceEEEEcchHHHHHHHHHHHHHHHHHh
Confidence 3334445443 23667777789999999987 45565665422 2334455555555544
No 38
>PRK10897 phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr); Provisional
Probab=37.54 E-value=69 Score=21.58 Aligned_cols=28 Identities=14% Similarity=0.243 Sum_probs=17.5
Q ss_pred CeeEEEEEEecCHHH-HHHHHHHHHHHcc
Q 031793 118 QGPLIISFEGKDQAR-IEAAIESLFKKFH 145 (153)
Q Consensus 118 ~~~v~l~~~g~~~~~-~~~~~~~l~~~l~ 145 (153)
+-.|+++++|+|+++ ++++.+.+.+.|+
T Consensus 60 G~~i~v~~~G~De~~A~~~l~~~~~~~~~ 88 (90)
T PRK10897 60 GRQIEVEATGPQEEEALAAVIALFNSGFD 88 (90)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHhccC
Confidence 346999999999864 3444444444443
No 39
>PF02675 AdoMet_dc: S-adenosylmethionine decarboxylase ; InterPro: IPR003826 Polyamines such as spermidine and spermine are essential for cellular growth under most conditions, being implicated in a large number of cellular processes including DNA, RNA and protein synthesis. S-adenosylmethionine decarboxylase (AdoMetDC) plays an essential regulatory role in the polyamine biosynthetic pathway by generating the n-propylamine residue required for the synthesis of spermidine and spermine from putrescein [, ]. Unlike many amino acid decarboxylases AdoMetDC uses a covalently bound pyruvate residue as a cofactor rather than the more common pyridoxal 5'-phosphate. These proteins can be divided into two main groups which show little sequence similarity either to each other, or to other pyruvoyl-dependent amino acid decarboxylases: class I enzymes found in bacteria and archaea, and class II enzymes found in eukaryotes. In both groups the active enzyme is generated by the post-translational autocatalytic cleavage of a precursor protein. This cleavage generates the pyruvate precursor from an internal serine residue and results in the formation of two non-identical subunits termed alpha and beta which form the active enzyme. Members of this family are related to the amino terminus of Escherichia coli S-adenosylmethionine decarboxylase.; GO: 0004014 adenosylmethionine decarboxylase activity, 0008295 spermidine biosynthetic process; PDB: 1VR7_A 3IWC_D 3IWD_D 3IWB_C 1TMI_A 1TLU_A 2III_A.
Probab=34.71 E-value=1.1e+02 Score=20.90 Aligned_cols=40 Identities=25% Similarity=0.212 Sum_probs=31.1
Q ss_pred CcEEEEccccCCeeEEEEEEecCHHHHHHHHHHHHHHcccCc
Q 031793 107 DLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHRGA 148 (153)
Q Consensus 107 ~v~ig~yp~~~~~~v~l~~~g~~~~~~~~~~~~l~~~l~~~i 148 (153)
.+.|-+||..+...+.|...|. ...+++.+.|++.|+..-
T Consensus 58 HisiHTwPE~~~~avDiftC~~--~~p~~a~~~l~~~f~~~~ 97 (106)
T PF02675_consen 58 HISIHTWPEHGYAAVDIFTCGE--FDPEKAIEYLKKAFKPDK 97 (106)
T ss_dssp EEEEEEEGGGTEEEEEEEEEST--HHHHHHHHHHHHHHT-SE
T ss_pred EEEEEeCCCcCeEEEEEEEcCC--CCHHHHHHHHHHHhCCCE
Confidence 5789999987767788888877 455788999999888753
No 40
>cd07049 BMC_EutL_repeat1 ethanolamine utilization protein S (EutS), Bacterial Micro-Compartment (BMC) domain repeat 1. EutL proteins are homologs of the carboxysome shell protein. They are encoded within the eut operon and might be required for the formation of the outer shell of the bacterial eut polyhedral organelles which are involved in the cobalamin-dependent degradation of ethanolamine. Although it has been suggested that EutL might form hexamers and further assemble into the flat facets of the polyhedral outer shell of the eut organelles at present no experimental evidence directly supports this view. EutL proteins contain two tandem BMC domains. This CD includes domain 1 (the first BMC domain of EutL).
Probab=34.20 E-value=1.4e+02 Score=21.01 Aligned_cols=58 Identities=12% Similarity=0.218 Sum_probs=37.3
Q ss_pred eCCChhhhHHHHHHhhhhCCCcEEEEccccC-----------CeeEEEEEEecCHHHHHHHHHHHHHHcccC
Q 031793 87 TNLSDLEAAQPLSKLCLEFPDLHIGCYRKSR-----------QGPLIISFEGKDQARIEAAIESLFKKFHRG 147 (153)
Q Consensus 87 ~g~~ES~l~~~L~~l~~~~~~v~ig~yp~~~-----------~~~v~l~~~g~~~~~~~~~~~~l~~~l~~~ 147 (153)
...+|..+-. .|...+--+|+++ |++.. .+.|.+.+.|.|.++++.+.+...+.+...
T Consensus 32 ~~~~e~~iiA--~DeAtKaa~vev~-~~~~f~gGa~h~~~~~sG~vi~ii~G~dvsdV~sal~~~l~~l~~~ 100 (103)
T cd07049 32 ADSDDVTYTA--LDEATKAAEVEVV-YARSFYAGAAHASTPLAGEVIGILAGPSPAEVRSGLNAAIDFIENE 100 (103)
T ss_pred eCCCcceeeh--hhhhhhhcCeEEE-EEeecccccccCccCCCccEEEEEeCCCHHHHHHHHHHHHHHHhcc
Confidence 5666655322 3333344589999 45444 345677788889888888888777766543
No 41
>PRK13780 phosphocarrier protein HPr; Provisional
Probab=33.12 E-value=64 Score=21.60 Aligned_cols=16 Identities=38% Similarity=0.428 Sum_probs=12.4
Q ss_pred CeeEEEEEEecCHHHH
Q 031793 118 QGPLIISFEGKDQARI 133 (153)
Q Consensus 118 ~~~v~l~~~g~~~~~~ 133 (153)
+..|.|+++|.|++++
T Consensus 58 G~~v~i~a~G~De~~A 73 (88)
T PRK13780 58 GADITISAEGADAADA 73 (88)
T ss_pred CCEEEEEEeCcCHHHH
Confidence 4469999999997643
No 42
>PTZ00302 N-acetylglucosamine-phosphate mutase; Provisional
Probab=32.87 E-value=1.6e+02 Score=26.90 Aligned_cols=53 Identities=4% Similarity=-0.018 Sum_probs=34.4
Q ss_pred hHHHHHHhhhhC-CCcEEEEccccCCeeEEEEEEecCHHHHHHHHHHHHHHccc
Q 031793 94 AAQPLSKLCLEF-PDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHR 146 (153)
Q Consensus 94 l~~~L~~l~~~~-~~v~ig~yp~~~~~~v~l~~~g~~~~~~~~~~~~l~~~l~~ 146 (153)
|++.+..+...+ ++=.+-..|+..+--||+.+++.+++.+++..+++.+.+.+
T Consensus 527 Lq~~id~~~~~~~~~gr~lvRpSGTEp~vRvyaEA~t~~~a~~l~~~v~~~v~~ 580 (585)
T PTZ00302 527 LQDKIDAIVSKYDNAARAFIRPSGTEPVVRVYAEAPTLEQADELANEVKGLVLR 580 (585)
T ss_pred HHHHHHHHHhhccCCceEEEEcCCCCcEEEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 445555554344 33223355654455699999999999888888877776643
No 43
>PF03135 CagE_TrbE_VirB: CagE, TrbE, VirB family, component of type IV transporter system; InterPro: IPR018145 This domain is found in (amongst others): the Helicobacter pylori protein CagE (see examples), which together with other proteins from the cag pathogenicity island (PAI), encodes a type IV transporter secretion system. The precise role of CagE is not known, but studies in animal models have shown that it is essential for pathogenesis in Helicobacter pylori induced gastritis and peptic ulceration []. Indeed, the expression of the cag PAI has been shown to be essential for stimulating human gastric epithelial cell apoptosis in vitro []. Similar type IV transport systems are also found in other bacteria. This domain is also found in proteins from the trb and Vir conjugal transfer systems in Agrobacterium tumefaciens and homologues of VirB proteins from other species.; GO: 0005524 ATP binding
Probab=32.62 E-value=1.7e+02 Score=22.21 Aligned_cols=37 Identities=14% Similarity=0.317 Sum_probs=28.1
Q ss_pred CcEEEEccccCCeeEEEEEEecCHHHHHHHHHHHHHHcccCce
Q 031793 107 DLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHRGAF 149 (153)
Q Consensus 107 ~v~ig~yp~~~~~~v~l~~~g~~~~~~~~~~~~l~~~l~~~i~ 149 (153)
.+.+|.| +..|.+.++|.+.+++..+.+...|...-|
T Consensus 143 ~~~~G~~------~~~i~v~~~~~~~l~~~~~~v~~~l~~~G~ 179 (205)
T PF03135_consen 143 RVSFGYY------HFTIVVFADDPEELDDKVAEVSSALNNLGF 179 (205)
T ss_pred Ceeeeee------EEEEEEEcCCHHHHHHHHHHHHHHHHHCCC
Confidence 5565554 477888999999999998888887765443
No 44
>cd07053 BMC_PduT_repeat1 1,2-propanediol utilization protein T (PduT), Bacterial Micro-Compartment (BMC) domain repeat 1. PduT proteins are homologs of the carboxysome shell protein. They are encoded within the pdu operon and might be required for the formation of the outer shell of the bacterial pdu polyhedral organelles which are involved in coenzyme B12-dependent degradation of 1,2-propanediol. Although it has been suggested that PduT might form hexamers and further assemble into the flat facets of the polyhedral outer shell of pdu organelles at present no experimental evidence directly supports this view. PduT proteins contain two tandem BMC domains repeats. This CD contains repeat 1 (the first BMC domain of PduT) as well as carboxysome shell protein sequence homolog, EutM protein, are also included in this CD. They too might exist as hexamers and might play similar functional roles in the construction of the eut organelle outer shell which still remains poorly understood.
Probab=32.61 E-value=1.4e+02 Score=19.41 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=30.1
Q ss_pred CCcEEEEccccCCeeEEEEEEecCHHHHHHHHHHHHHHcccCceee
Q 031793 106 PDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHRGAFSE 151 (153)
Q Consensus 106 ~~v~ig~yp~~~~~~v~l~~~g~~~~~~~~~~~~l~~~l~~~i~~~ 151 (153)
-+|++..|-....++..+.++|+ -+.++.+.+.-++..+..+++.
T Consensus 24 a~V~l~~~~~~~~Gk~~vii~Gd-vsaV~~Av~a~~~~~~~~~v~~ 68 (76)
T cd07053 24 ANVELVLAKTICPGKYIIIVSGD-VGAVQAAVDAGKEIGGKYVVDS 68 (76)
T ss_pred CceEEEEEEeecCCEEEEEEEEc-HHHHHHHHHHHHHHhCCcEEEE
Confidence 48998888655556666777774 4555677776667666665554
No 45
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=31.78 E-value=2.5e+02 Score=21.85 Aligned_cols=55 Identities=16% Similarity=0.288 Sum_probs=39.5
Q ss_pred eCCChhhhHHHHHHhhhhCCCcEEEEccccCC--eeEEEEEEecCHHHHHHHHHHHHHH
Q 031793 87 TNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQ--GPLIISFEGKDQARIEAAIESLFKK 143 (153)
Q Consensus 87 ~g~~ES~l~~~L~~l~~~~~~v~ig~yp~~~~--~~v~l~~~g~~~~~~~~~~~~l~~~ 143 (153)
+.++++.|.+ +......| +|.++....... +...|.+.+.|.+.+..|.+.+...
T Consensus 37 i~i~~~~lk~-F~k~AkKy-GV~yav~kdk~~~~~~~~V~FkA~Da~~i~~af~~~~~~ 93 (204)
T PF12687_consen 37 IEITDEDLKE-FKKEAKKY-GVDYAVKKDKSTGPGKYDVFFKAKDADVINRAFKEFSAK 93 (204)
T ss_pred EecCHhhHHH-HHHHHHHc-CCceEEeeccCCCCCcEEEEEEcCcHHHHHHHHHHHHHH
Confidence 7788888665 44445566 788888883332 3688999999999988888776543
No 46
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=30.81 E-value=1.5e+02 Score=18.96 Aligned_cols=63 Identities=27% Similarity=0.392 Sum_probs=34.7
Q ss_pred CeEEEEEE-e-CCChhhhHHHHHHhhhhCCCcEEEEccccCCeeEEEEEEecCHHHHHHHHHHHHHHcc
Q 031793 79 PYTSKSLT-T-NLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFH 145 (153)
Q Consensus 79 ~~~~~~l~-~-g~~ES~l~~~L~~l~~~~~~v~ig~yp~~~~~~v~l~~~g~~~~~~~~~~~~l~~~l~ 145 (153)
|.++..+. . .-.+..+.+.|..+..+.|.+.+..-.. .+.+.|+.-| +--++-+.+.|+++++
T Consensus 4 Pv~~~~i~p~~~~d~~kl~~aL~~l~~eDP~l~~~~d~e--t~e~~l~g~G--elhlev~~~~L~~~~~ 68 (75)
T PF14492_consen 4 PVLSVAIEPKNKEDEPKLSEALQKLSEEDPSLRVERDEE--TGELILSGMG--ELHLEVLLERLKRRFG 68 (75)
T ss_dssp -SEEEEEEESSHHHHHHHHHHHHHHHHH-TTSEEEEETT--TSEEEEEESS--HHHHHHHHHHHHHTTC
T ss_pred CeEEEEEEECCHhHHHHHHHHHHHHHhcCCeEEEEEcch--hceEEEEECC--HHHHHHHHHHHHHHHC
Confidence 44455554 2 3456667777777777766666555443 2334444333 3445666666666665
No 47
>PRK10850 PTS system phosphohistidinoprotein-hexose phosphotransferase subunit Hpr; Provisional
Probab=30.64 E-value=1.1e+02 Score=20.35 Aligned_cols=18 Identities=28% Similarity=0.350 Sum_probs=13.1
Q ss_pred CeeEEEEEEecCHHHHHH
Q 031793 118 QGPLIISFEGKDQARIEA 135 (153)
Q Consensus 118 ~~~v~l~~~g~~~~~~~~ 135 (153)
+..|+|+++|.|++++-+
T Consensus 58 G~~v~i~~~G~De~~A~~ 75 (85)
T PRK10850 58 GTVVTISAEGEDEQKAVE 75 (85)
T ss_pred CCEEEEEEeCcCHHHHHH
Confidence 346999999999865433
No 48
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=29.88 E-value=52 Score=25.10 Aligned_cols=48 Identities=17% Similarity=0.232 Sum_probs=29.5
Q ss_pred cccceeccC-CCceeeeCCCCcccEEEEc-eEEEecCCCCch-hHHHHH-HHHHhHH
Q 031793 18 PFQMALLPE-GTTELLHHDKLLLPLIKCQ-NVIILTATNVTE-LDKEWN-CLIELLR 70 (153)
Q Consensus 18 ~~rqA~vP~-ga~~il~N~~GtAPG~~i~-~v~~LPG~~vP~-m~~m~~-~v~p~l~ 70 (153)
..||--+-+ |...++. .++| |+.=. -||+||| -|. .+.-|+ -++|.+.
T Consensus 103 ~fR~~S~~~~g~~AiLS--Ra~a-Gv~~~tlIf~LPG--Sp~Avr~~l~~iI~p~l~ 154 (169)
T COG0521 103 LFRRLSLEEIGPTAILS--RAVA-GVRNGTLIFNLPG--SPGAVRDALEGIILPELD 154 (169)
T ss_pred HHHHhhhhcCCCcEEEe--eeee-EEeCCeEEEEcCC--ChhhHHHHHHHHHHHhcc
Confidence 355555556 6523442 2333 44322 3999999 999 988887 5677763
No 49
>PF02391 MoaE: MoaE protein; InterPro: IPR003448 This family contains the MoaE protein that is involved in biosynthesis of molybdopterin []. Molybdopterin, the universal component of the pterin molybdenum cofactors, contains a dithiolene group serving to bind Mo. Addition of the dithiolene sulphurs to a molybdopterin precursor requires the activity of the converting factor. Converting factor contains the MoaE and MoaD proteins.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 2WP4_B 2OMD_B 1NVJ_E 1FM0_E 3BII_E 1NVI_E 1FMA_E 2QIE_K 2Q5W_E 3RPF_A ....
Probab=29.87 E-value=2e+02 Score=20.16 Aligned_cols=57 Identities=9% Similarity=0.169 Sum_probs=38.4
Q ss_pred CCChhhhHHHHHHhhhhCCCcE------EEEccccCCeeEEEEEEecCHHHHHHHHHHHHHHcc
Q 031793 88 NLSDLEAAQPLSKLCLEFPDLH------IGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFH 145 (153)
Q Consensus 88 g~~ES~l~~~L~~l~~~~~~v~------ig~yp~~~~~~v~l~~~g~~~~~~~~~~~~l~~~l~ 145 (153)
.+.|..+++...++..+|+-.. +|..+ .++.-+-+.+.|.....+=+|++.+.++++
T Consensus 52 ~ma~~~l~~I~~e~~~~~~~~~v~i~HR~G~l~-vGe~~v~V~vsa~hR~eaf~A~~~~id~iK 114 (117)
T PF02391_consen 52 EMAEKELEEIAEEARERFGIVDVAIVHRVGRLK-VGEPIVLVAVSAPHRKEAFEACEYIIDRIK 114 (117)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCEEEEEEEEEEEE-TTSEEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEEEeeCCCC-CCCeEEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 5777888888888888887444 45554 234457778888877766566666666554
No 50
>cd03086 PGM3 PGM3 (phosphoglucomutase 3), also known as PAGM (phosphoacetylglucosamine mutase) and AGM1 (N-acetylglucosamine-phosphate mutase), is an essential enzyme found in eukaryotes that reversibly catalyzes the conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate as part of the UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthetic pathway. UDP-GlcNAc is an essential metabolite that serves as the biosynthetic precursor of many glycoproteins and mucopolysaccharides. AGM1 is a member of the alpha-D-phosphohexomutase superfamily, which catalyzes the intramolecular phosphoryl transfer of sugar substrates. The alpha-D-phosphohexomutases have four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=28.28 E-value=2.7e+02 Score=24.84 Aligned_cols=33 Identities=6% Similarity=-0.027 Sum_probs=25.8
Q ss_pred EEccccCCeeEEEEEEecCHHHHHHHHHHHHHH
Q 031793 111 GCYRKSRQGPLIISFEGKDQARIEAAIESLFKK 143 (153)
Q Consensus 111 g~yp~~~~~~v~l~~~g~~~~~~~~~~~~l~~~ 143 (153)
=..|+..+--|||.+++++++.+++..+++.+.
T Consensus 480 lVRpSGTEp~iRvyaEA~t~~~~~~l~~~i~~~ 512 (513)
T cd03086 480 FVRPSGTEDVVRVYAEAATQEEADELANEVAEL 512 (513)
T ss_pred EEecCCCCcEEEEEEEeCCHHHHHHHHHHHHhh
Confidence 356655455699999999999998888887654
No 51
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=27.89 E-value=92 Score=26.20 Aligned_cols=60 Identities=17% Similarity=0.192 Sum_probs=36.2
Q ss_pred EeCCChhhhHHHHHHhhhhCCCcEEEEccccCCeeEEEEEEecCH-HHHHHHHHHHHHHccc
Q 031793 86 TTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQ-ARIEAAIESLFKKFHR 146 (153)
Q Consensus 86 ~~g~~ES~l~~~L~~l~~~~~~v~ig~yp~~~~~~v~l~~~g~~~-~~~~~~~~~l~~~l~~ 146 (153)
++.+++...++.++++..+- ..+=|.-++.+--.+-|.++|.|+ +..++.+++++..++.
T Consensus 37 h~~ig~~~~~~rie~~i~~A-~~k~g~d~~~~lr~lgL~lSg~d~e~~~~~lv~~~R~~fps 97 (336)
T KOG1794|consen 37 HWLIGSTTCASRIEDMIREA-KEKAGWDKKGPLRSLGLGLSGTDQEDKNRKLVTEFRDKFPS 97 (336)
T ss_pred cccCCchHHHHHHHHHHHHH-HhhcCCCccCccceeeeecccCCchhHHHHHHHHHHHhccc
Confidence 46677777777777764432 122233333212246677777664 4567888888888764
No 52
>TIGR01046 S10_Arc_S20_Euk ribosomal protein S10(archaeal)/S20(eukaryotic). its equivalents in eukaryotes.
Probab=27.63 E-value=1.3e+02 Score=20.75 Aligned_cols=26 Identities=8% Similarity=0.074 Sum_probs=21.9
Q ss_pred eEEEEEEecCHHHHHHHHHHHHHHcc
Q 031793 120 PLIISFEGKDQARIEAAIESLFKKFH 145 (153)
Q Consensus 120 ~v~l~~~g~~~~~~~~~~~~l~~~l~ 145 (153)
.++|++.|.|...++++++.+.+...
T Consensus 2 ~irI~L~S~d~~~Ld~~~~~I~~~ak 27 (99)
T TIGR01046 2 KARIKLTSTNVRSLEKVCAQIKRIAE 27 (99)
T ss_pred cEEEEEEECCHHHHHHHHHHHHHHHH
Confidence 47899999999999999998887554
No 53
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=27.52 E-value=1.4e+02 Score=17.76 Aligned_cols=36 Identities=17% Similarity=0.129 Sum_probs=24.6
Q ss_pred EEEEccccCCeeEEEEEEecCHHHHHHHHHHHHHHcccC
Q 031793 109 HIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHRG 147 (153)
Q Consensus 109 ~ig~yp~~~~~~v~l~~~g~~~~~~~~~~~~l~~~l~~~ 147 (153)
.+-++| .++|+..+.|-.-..-.++.+.|.+.||.-
T Consensus 2 ~~~I~~---dG~V~~~v~G~~G~~C~~~t~~lE~~LG~v 37 (48)
T PF11211_consen 2 EFTIYP---DGRVEEEVEGFKGSSCLEATAALEEALGTV 37 (48)
T ss_pred EEEECC---CcEEEEEEEeccChhHHHHHHHHHHHhCce
Confidence 445666 577888888766565567777777777643
No 54
>PF13083 KH_4: KH domain; PDB: 3GKU_B.
Probab=27.41 E-value=1.6e+02 Score=18.41 Aligned_cols=41 Identities=15% Similarity=0.236 Sum_probs=25.2
Q ss_pred hhHHHHHHhhhhCCCcEEEEccccCCeeEEEEEEecCHHHH
Q 031793 93 EAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARI 133 (153)
Q Consensus 93 ~l~~~L~~l~~~~~~v~ig~yp~~~~~~v~l~~~g~~~~~~ 133 (153)
.+.+.|..+.....++++-.........+.+.+.++|...+
T Consensus 3 ~l~~~l~~l~~~~~~v~v~~~~~~~~~~i~v~i~~ed~g~l 43 (73)
T PF13083_consen 3 FLEDFLKNLVDKPMDVEVTIEIEEDGDTIVVNIDGEDAGRL 43 (73)
T ss_dssp --HHHHHHHHHHTT--EEEEEEETTTTEEEEEEESCCCHHH
T ss_pred hHHHHHHHHhCCcCeEEEEEEEcCCceEEEEEECCCccceE
Confidence 45667777765545777777644445678888898886643
No 55
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=27.21 E-value=1.7e+02 Score=18.48 Aligned_cols=51 Identities=20% Similarity=0.220 Sum_probs=32.0
Q ss_pred hhHHHHHHhhhhCCCc-EEEEccccCC---eeEEEEEEec-CHHHHHHHHHHHHHH
Q 031793 93 EAAQPLSKLCLEFPDL-HIGCYRKSRQ---GPLIISFEGK-DQARIEAAIESLFKK 143 (153)
Q Consensus 93 ~l~~~L~~l~~~~~~v-~ig~yp~~~~---~~v~l~~~g~-~~~~~~~~~~~l~~~ 143 (153)
.|++.++.+.+..-++ ++.++|.... ..+++.+++. +.+.++++.+.|+..
T Consensus 14 ~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~~ 69 (80)
T cd04905 14 ALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKRL 69 (80)
T ss_pred HHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHHh
Confidence 4677777665443344 7889996432 2466667765 456667777777764
No 56
>PTZ00039 40S ribosomal protein S20; Provisional
Probab=26.05 E-value=1.4e+02 Score=21.19 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=22.4
Q ss_pred eEEEEEEecCHHHHHHHHHHHHHHcc
Q 031793 120 PLIISFEGKDQARIEAAIESLFKKFH 145 (153)
Q Consensus 120 ~v~l~~~g~~~~~~~~~~~~l~~~l~ 145 (153)
.++|++.|.|...++++++.|.+...
T Consensus 18 kirI~L~S~d~~~Ld~~~~~Ii~~ak 43 (115)
T PTZ00039 18 KIRITLTSKNLKSIEKVCADIITGAK 43 (115)
T ss_pred EEEEEEEECCHHHHHHHHHHHHHHHH
Confidence 58999999999999999998887554
No 57
>smart00877 BMC Bacterial microcompartments are primitive organelles composed entirely of protein subunits. The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric structure.
Probab=25.99 E-value=1.9e+02 Score=18.61 Aligned_cols=39 Identities=21% Similarity=0.346 Sum_probs=26.6
Q ss_pred CCcEEEEccccCCeeEEEEEEecCHHHHHHHHHHHHHHcc
Q 031793 106 PDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFH 145 (153)
Q Consensus 106 ~~v~ig~yp~~~~~~v~l~~~g~~~~~~~~~~~~l~~~l~ 145 (153)
-+|++-.+-....++..+.+.| |.+.++.+.+...+..+
T Consensus 24 A~V~l~~~~~~~~g~~~~~v~G-dvs~V~~Av~a~~~~~~ 62 (75)
T smart00877 24 ANVELVGYESIGGGKVTVIITG-DVAAVRAAVEAGLEAAE 62 (75)
T ss_pred cCcEEEEEEecCCCEEEEEEEE-cHHHHHHHHHHHHHHHh
Confidence 3888887776656677888888 66666666666655543
No 58
>PRK12271 rps10p 30S ribosomal protein S10P; Reviewed
Probab=25.89 E-value=1.2e+02 Score=21.07 Aligned_cols=26 Identities=4% Similarity=0.106 Sum_probs=21.9
Q ss_pred eEEEEEEecCHHHHHHHHHHHHHHcc
Q 031793 120 PLIISFEGKDQARIEAAIESLFKKFH 145 (153)
Q Consensus 120 ~v~l~~~g~~~~~~~~~~~~l~~~l~ 145 (153)
.++|++.|.|...++++++.+.+...
T Consensus 3 ~irI~L~S~d~~~Ld~~~~~I~~~~k 28 (102)
T PRK12271 3 KARIRLSSTNPEDLDEVCDQIKEIAE 28 (102)
T ss_pred eEEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 48899999999999999998877543
No 59
>COG4044 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.40 E-value=1.6e+02 Score=23.49 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=17.3
Q ss_pred CeeEEEEEEecCHHHHHHHHHHHHHHcc
Q 031793 118 QGPLIISFEGKDQARIEAAIESLFKKFH 145 (153)
Q Consensus 118 ~~~v~l~~~g~~~~~~~~~~~~l~~~l~ 145 (153)
....+++++|.|.+ .+.+.|.+.++
T Consensus 41 ~~w~~itleGed~e---~sanli~eefg 65 (247)
T COG4044 41 KQWAKITLEGEDEE---VSANLIVEEFG 65 (247)
T ss_pred ccceEEEEECccHH---HHHHHHHHHhC
Confidence 35688999998876 45556666665
No 60
>KOG2794 consensus Delta-aminolevulinic acid dehydratase [Coenzyme transport and metabolism]
Probab=24.88 E-value=2.8e+02 Score=23.15 Aligned_cols=83 Identities=19% Similarity=0.281 Sum_probs=48.2
Q ss_pred CcccccceeccCCCceeeeCCCCcccEEEEc------eEEEecCCCCch--hHHHHHHHHHhHHhCCCCCCCCeEEEEEE
Q 031793 15 LGFPFQMALLPEGTTELLHHDKLLLPLIKCQ------NVIILTATNVTE--LDKEWNCLIELLRSGGLSLMEPYTSKSLT 86 (153)
Q Consensus 15 ~~~~~rqA~vP~ga~~il~N~~GtAPG~~i~------~v~~LPG~~vP~--m~~m~~~v~p~l~~~~~~~~~~~~~~~l~ 86 (153)
.....|++. +++ .|-+ .+-..|.|..+ .|-.||| +-+ .+.+-+.+.|....+ + +++.
T Consensus 23 ~~p~lR~~q--~~~-~is~-~nliyPlFI~e~~dd~~pI~SmPg--~~r~G~~rL~e~l~plv~~G-l--------~sVi 87 (340)
T KOG2794|consen 23 KHPLLRAWQ--QET-NISP-ANLIYPLFIHEGEDDFTPIDSMPG--IYRLGVNRLKEELAPLVAKG-L--------RSVI 87 (340)
T ss_pred CCHHHHHHh--ccC-CCCh-hheeeeEEEecCcccccccccCCc--hhHHHHHHHHHHHHHHHHhc-c--------ceEE
Confidence 333455553 455 4433 34678888875 2889999 775 556445666766554 2 1121
Q ss_pred -eCC---------------ChhhhHHHHHHhhhhCCCcEEEE
Q 031793 87 -TNL---------------SDLEAAQPLSKLCLEFPDLHIGC 112 (153)
Q Consensus 87 -~g~---------------~ES~l~~~L~~l~~~~~~v~ig~ 112 (153)
||. +++-+-+.+..+.+.||++-|.+
T Consensus 88 Lfgvv~~~~Kd~~gs~Ads~~gpvi~ai~~lr~~fPdL~i~c 129 (340)
T KOG2794|consen 88 LFGVVPEALKDPTGSEADSDNGPVIRAIRLLRDRFPDLVIAC 129 (340)
T ss_pred EecCCCccccCcccccccCCCCcHHHHHHHHHHhCcceEEEe
Confidence 333 23335566777777889765554
No 61
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=24.83 E-value=31 Score=32.39 Aligned_cols=31 Identities=29% Similarity=0.256 Sum_probs=20.8
Q ss_pred ChHHHHHHhhCCCCCcccccc-eeccCCCceeeeCCCCc
Q 031793 1 MEVFEFLCLQFDLILGFPFQM-ALLPEGTTELLHHDKLL 38 (153)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~rq-A~vP~ga~~il~N~~Gt 38 (153)
||.|+|++. ++.-.++ |.+|.|+ +|..|.||
T Consensus 324 ~E~V~fLKN-----P~~Y~~lGAKiPkGv--LL~GPPGT 355 (774)
T KOG0731|consen 324 MEFVKFLKN-----PEQYQELGAKIPKGV--LLVGPPGT 355 (774)
T ss_pred HHHHHHhcC-----HHHHHHcCCcCcCce--EEECCCCC
Confidence 566776654 2223444 9999998 67788776
No 62
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=23.98 E-value=2.6e+02 Score=20.46 Aligned_cols=53 Identities=11% Similarity=0.013 Sum_probs=31.0
Q ss_pred eCCChhhhHHHHHHhhhhCCCcEEEEccccC----C--e--eEEEEEEecCHHHHHHHHHHHH
Q 031793 87 TNLSDLEAAQPLSKLCLEFPDLHIGCYRKSR----Q--G--PLIISFEGKDQARIEAAIESLF 141 (153)
Q Consensus 87 ~g~~ES~l~~~L~~l~~~~~~v~ig~yp~~~----~--~--~v~l~~~g~~~~~~~~~~~~l~ 141 (153)
+|++++.+..+++.|.+. ++--|+.+..+ + . .+.+++++...+..+++.+.+.
T Consensus 38 lglS~~tv~~Ri~rL~~~--GvI~~~~~~v~p~~lg~~~~a~v~i~~~~~~~~~~~~~~~~l~ 98 (164)
T PRK11169 38 VGLSPTPCLERVRRLERQ--GFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNAAVQ 98 (164)
T ss_pred HCcCHHHHHHHHHHHHHC--CCeEEEEEEECHHHhCCCEEEEEEEEEcCCChHHHHHHHHHHh
Confidence 799999999999999765 34333333111 1 1 2455555444554555554443
No 63
>cd03084 phosphohexomutase The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). These enzymes play important and diverse roles in carbohydrate metabolism in organisms from bacteria to humans. Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=23.39 E-value=1.6e+02 Score=24.30 Aligned_cols=32 Identities=13% Similarity=0.057 Sum_probs=24.3
Q ss_pred EccccCCeeEEEEEEecCHHHHHHHHHHHHHH
Q 031793 112 CYRKSRQGPLIISFEGKDQARIEAAIESLFKK 143 (153)
Q Consensus 112 ~yp~~~~~~v~l~~~g~~~~~~~~~~~~l~~~ 143 (153)
..|+..+--+||.+++.+++.+++..+.+.+.
T Consensus 323 irps~tep~~ri~~Ea~~~e~a~~l~~~~~~~ 354 (355)
T cd03084 323 VRASGTEPAIRIYAEADTQEDVEQIKKEAREL 354 (355)
T ss_pred EecCCCCcEEEEEEeeCCHHHHHHHHHHHHhh
Confidence 44544445699999999999888888877664
No 64
>cd00756 MoaE MoaE family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor for a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), which carries the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase in the second major step in Moco biosynthesis. MPT synthase is a heterotetramer consisting of two large (MoaE) and two small (MoaD) subunits.
Probab=23.13 E-value=2.8e+02 Score=19.70 Aligned_cols=58 Identities=9% Similarity=0.139 Sum_probs=35.5
Q ss_pred CCChhhhHHHHHHhhhhCCCcEEEEccccC-----CeeEEEEEEecCHHHHHHHHHHHHHHcc
Q 031793 88 NLSDLEAAQPLSKLCLEFPDLHIGCYRKSR-----QGPLIISFEGKDQARIEAAIESLFKKFH 145 (153)
Q Consensus 88 g~~ES~l~~~L~~l~~~~~~v~ig~yp~~~-----~~~v~l~~~g~~~~~~~~~~~~l~~~l~ 145 (153)
++.|..+.+..+++..+++-..+..+=+.+ +.-+-+.+.+.....+=+|++.+.++++
T Consensus 44 ~ma~~~l~~I~~e~~~k~~~~~v~v~HR~G~l~vGe~~v~i~v~a~hR~~af~A~~~~id~lK 106 (124)
T cd00756 44 PMAEKELEEIAEEARERWGLLRVAIIHRVGRLPPGEAIVLVAVSSPHRKEAFEACEFLIDRLK 106 (124)
T ss_pred hHHHHHHHHHHHHHHHhCCCceEEEEEEEcccCCCCEEEEEEEecCCHHHHHHHHHHHHHHHH
Confidence 466788888888888788644443333322 3346677777766665555555555554
No 65
>PRK14434 acylphosphatase; Provisional
Probab=21.97 E-value=2.6e+02 Score=18.78 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=24.7
Q ss_pred EEccccCCeeEEEEEEecCHHHHHHHHHHHHHHcc
Q 031793 111 GCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFH 145 (153)
Q Consensus 111 g~yp~~~~~~v~l~~~g~~~~~~~~~~~~l~~~l~ 145 (153)
|+--+...+.|.+.+.|++.+.+++..++|++.-+
T Consensus 33 G~V~N~~dGsVei~~qG~~~~~l~~f~~~l~~g~p 67 (92)
T PRK14434 33 GRVWNNDDGTVEILAQSDDSAKLAKFIQEIRKGPS 67 (92)
T ss_pred EEEEECCCCCEEEEEEcCCHHHHHHHHHHHhcCCC
Confidence 55444445678888888776677888888877554
No 66
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=21.67 E-value=2.1e+02 Score=24.52 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=20.9
Q ss_pred eeEEEEEEecCHHHHHHHHHHHHHH
Q 031793 119 GPLIISFEGKDQARIEAAIESLFKK 143 (153)
Q Consensus 119 ~~v~l~~~g~~~~~~~~~~~~l~~~ 143 (153)
-.+||.+++.|++.+++..+++.+.
T Consensus 418 P~iriy~Ea~~~~~a~~l~~~~~~~ 442 (443)
T cd03089 418 PVLVLRFEADTEEGLEEIKAELRKL 442 (443)
T ss_pred CEEEEEEEeCCHHHHHHHHHHHHhh
Confidence 3599999999999988888887664
No 67
>PRK14320 glmM phosphoglucosamine mutase; Provisional
Probab=21.37 E-value=1.6e+02 Score=25.38 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=27.0
Q ss_pred EccccCCeeEEEEEEecCHHHHHHHHHHHHHHcccC
Q 031793 112 CYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHRG 147 (153)
Q Consensus 112 ~yp~~~~~~v~l~~~g~~~~~~~~~~~~l~~~l~~~ 147 (153)
..|+..+--+|+.+++++++.+++..+.+.+.+...
T Consensus 406 iRpS~teP~~rv~~Ea~s~e~a~~l~~~~~~~i~~~ 441 (443)
T PRK14320 406 LRPSGTEPVLRVMVEADDKSLATNEAEYLVEKVKQK 441 (443)
T ss_pred EecCCCCceEEEEEecCCHHHHHHHHHHHHHHHHhh
Confidence 445443445999999999999888888887776543
No 68
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.93 E-value=3.5e+02 Score=20.53 Aligned_cols=54 Identities=22% Similarity=0.347 Sum_probs=35.6
Q ss_pred EEeCCChhhhHHHHHHhhhhCCCcEEEEccccCCeeEEEEEEecCHHHHHHHHHHHHHHcccC
Q 031793 85 LTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHRG 147 (153)
Q Consensus 85 l~~g~~ES~l~~~L~~l~~~~~~v~ig~yp~~~~~~v~l~~~g~~~~~~~~~~~~l~~~l~~~ 147 (153)
+.+++-|--=++.++.+..++ |+. .--+.+.+++.|.+++++|.++|...+++.
T Consensus 61 ~kfNvwdvGGqd~iRplWrhY-------y~g--tqglIFV~Dsa~~dr~eeAr~ELh~ii~~~ 114 (180)
T KOG0071|consen 61 VKFNVWDVGGQDKIRPLWRHY-------YTG--TQGLIFVVDSADRDRIEEARNELHRIINDR 114 (180)
T ss_pred eEEeeeeccCchhhhHHHHhh-------ccC--CceEEEEEeccchhhHHHHHHHHHHHhCCH
Confidence 345555555567777775543 331 123667788888889999999998877653
No 69
>KOG3445 consensus Mitochondrial/chloroplast ribosomal protein 36a [Translation, ribosomal structure and biogenesis]
Probab=20.79 E-value=3.6e+02 Score=20.01 Aligned_cols=65 Identities=17% Similarity=0.129 Sum_probs=41.6
Q ss_pred EEEE-eCCChhh------hHHHHHHhhhhCCCcEEEEccccCC----------eeE-EEEEEecCHHHHHHHHHHHHHHc
Q 031793 83 KSLT-TNLSDLE------AAQPLSKLCLEFPDLHIGCYRKSRQ----------GPL-IISFEGKDQARIEAAIESLFKKF 144 (153)
Q Consensus 83 ~~l~-~g~~ES~------l~~~L~~l~~~~~~v~ig~yp~~~~----------~~v-~l~~~g~~~~~~~~~~~~l~~~l 144 (153)
-++. ++.++|. ++..|.++..++|+|.+-.-|+.+. ++. .+.++-.+++++.+.+..|+...
T Consensus 26 it~sfCnwggSSrGmR~Fle~~L~~~a~enP~v~i~v~~rrg~hP~lraeY~NGre~vicvrnms~eevs~~~~lL~ds~ 105 (145)
T KOG3445|consen 26 ITVSFCNWGGSSRGMREFLESELPDLARENPGVVIYVEPRRGQHPLLRAEYLNGRERVICVRNMSQEEVSKKATLLRDSS 105 (145)
T ss_pred EEEEEecCCCccHHHHHHHHHHHHHHHhhCCCeEEEEeccCCCCceEEEEecCCceEEEeeccCCHHHHHHHHHHHhccC
Confidence 3444 5666664 4556778888888888766665431 122 24446678888888888888776
Q ss_pred ccC
Q 031793 145 HRG 147 (153)
Q Consensus 145 ~~~ 147 (153)
|..
T Consensus 106 Gl~ 108 (145)
T KOG3445|consen 106 GLK 108 (145)
T ss_pred CCc
Confidence 643
No 70
>PF05137 PilN: Fimbrial assembly protein (PilN); InterPro: IPR007813 PilN is a plasmid-encoded, lipoprotein which locates to the outer membrane of bacteria and are part of a thin pilus required only for liquid mating [].
Probab=20.74 E-value=2.2e+02 Score=17.55 Aligned_cols=43 Identities=19% Similarity=0.198 Sum_probs=26.0
Q ss_pred HHHhhhhCC-CcEEEEccccCCeeEEEEEEecCHHHHHHHHHHHH
Q 031793 98 LSKLCLEFP-DLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLF 141 (153)
Q Consensus 98 L~~l~~~~~-~v~ig~yp~~~~~~v~l~~~g~~~~~~~~~~~~l~ 141 (153)
|.+|....| ++.+-.+-. .+..+.|+..+.+.+.+.+..+.|.
T Consensus 3 l~~L~~~~P~~v~l~~l~~-~~~~l~i~G~a~~~~~v~~f~~~L~ 46 (78)
T PF05137_consen 3 LDELARALPEGVWLTSLSI-NGNTLSISGYADSYQSVAAFLRNLE 46 (78)
T ss_pred HHHHHhhCCCCEEEEEEEE-eCCEEEEEEEECCHHHHHHHHHHHh
Confidence 444544444 677766663 2456777777777776666655554
No 71
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=20.70 E-value=3.9e+02 Score=20.81 Aligned_cols=97 Identities=14% Similarity=0.086 Sum_probs=55.7
Q ss_pred EEEecCCCCch-hHHHHHH-HHHhHHhCCCCCCCCeEEEEEE-eCCChhhhHHHHHHhhhhCC------------CcEEE
Q 031793 47 VIILTATNVTE-LDKEWNC-LIELLRSGGLSLMEPYTSKSLT-TNLSDLEAAQPLSKLCLEFP------------DLHIG 111 (153)
Q Consensus 47 v~~LPG~~vP~-m~~m~~~-v~p~l~~~~~~~~~~~~~~~l~-~g~~ES~l~~~L~~l~~~~~------------~v~ig 111 (153)
.++-|= +.. ++.|.+. -+.++... +. ...+....+. .-.+..++++.+.+.+.+.. ++.+.
T Consensus 39 ~Vvs~~--~~~el~~~~~~~~i~~~~~~-~~-~~~~~~~~lviaAt~d~~ln~~i~~~a~~~~i~vNv~D~p~~~~f~~P 114 (210)
T COG1648 39 TVVSPE--FEPELKALIEEGKIKWIERE-FD-AEDLDDAFLVIAATDDEELNERIAKAARERRILVNVVDDPELCDFIFP 114 (210)
T ss_pred EEEcCC--ccHHHHHHHHhcCcchhhcc-cC-hhhhcCceEEEEeCCCHHHHHHHHHHHHHhCCceeccCCcccCceecc
Confidence 455666 644 8787763 23344332 21 1112223343 57788899999988766631 34444
Q ss_pred EccccCCeeEEEEEEecCHHHHHHHHHHHHHHcccC
Q 031793 112 CYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHRG 147 (153)
Q Consensus 112 ~yp~~~~~~v~l~~~g~~~~~~~~~~~~l~~~l~~~ 147 (153)
+.-+.+...|-|+..|.+......+.++|.+.++++
T Consensus 115 a~~~r~~l~iaIsT~G~sP~la~~ir~~Ie~~l~~~ 150 (210)
T COG1648 115 AIVDRGPLQIAISTGGKSPVLARLLREKIEALLPPS 150 (210)
T ss_pred eeeccCCeEEEEECCCCChHHHHHHHHHHHHHcCCc
Confidence 444433445666666777776667777777777654
No 72
>PLN02895 phosphoacetylglucosamine mutase
Probab=20.50 E-value=4.4e+02 Score=23.93 Aligned_cols=36 Identities=6% Similarity=-0.036 Sum_probs=26.7
Q ss_pred EEEccccCCeeEEEEEEecCHHHHHHHHHHHHHHcc
Q 031793 110 IGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFH 145 (153)
Q Consensus 110 ig~yp~~~~~~v~l~~~g~~~~~~~~~~~~l~~~l~ 145 (153)
+=..|+..+--||+.+++.+++.+++..+++.+.+.
T Consensus 517 ~lvRpSGTEp~vRv~~Ea~t~~~~~~l~~~v~~~v~ 552 (562)
T PLN02895 517 AFVRPSGTEDVVRVYAEASTQEAADSLAREVARLVY 552 (562)
T ss_pred EEEEcCCCCcEEEEEEEECCHHHHHHHHHHHHHHHH
Confidence 335665445569999999999988888777776654
No 73
>PRK14322 glmM phosphoglucosamine mutase; Provisional
Probab=20.28 E-value=2.1e+02 Score=24.44 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=27.1
Q ss_pred EccccCCeeEEEEEEecCHHHHHHHHHHHHHHcc
Q 031793 112 CYRKSRQGPLIISFEGKDQARIEAAIESLFKKFH 145 (153)
Q Consensus 112 ~yp~~~~~~v~l~~~g~~~~~~~~~~~~l~~~l~ 145 (153)
..|+..+--+|+.+++.+++.+++..+.+.+.+.
T Consensus 395 vRpS~teP~irv~~Ea~~~~~a~~l~~~~~~~l~ 428 (429)
T PRK14322 395 IRPSGTEPVVRITVEGKDREEIEKIVEEISRVLE 428 (429)
T ss_pred EccCCCCcEEEEEEEECCHHHHHHHHHHHHHHHh
Confidence 5565545569999999999999999888887763
Done!