Query 031793
Match_columns 153
No_of_seqs 133 out of 995
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 08:18:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031793.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031793hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kbq_A Protein TA0487; structu 99.8 7.6E-19 2.6E-23 132.9 5.8 66 2-70 97-169 (172)
2 3iwt_A 178AA long hypothetical 96.5 0.00062 2.1E-08 50.4 1.1 46 19-70 123-170 (178)
3 1uuy_A CNX1, molybdopterin bio 95.2 0.0044 1.5E-07 45.5 0.5 49 19-71 104-157 (167)
4 2pbq_A Molybdenum cofactor bio 94.2 0.049 1.7E-06 40.3 4.2 34 34-71 118-157 (178)
5 2is8_A Molybdopterin biosynthe 93.9 0.092 3.2E-06 38.2 5.1 23 46-70 124-147 (164)
6 2g2c_A Putative molybdenum cof 93.1 0.058 2E-06 39.5 2.9 43 20-70 115-158 (167)
7 1y5e_A Molybdenum cofactor bio 92.5 0.097 3.3E-06 38.3 3.5 42 25-71 117-161 (169)
8 1mkz_A Molybdenum cofactor bio 87.2 0.32 1.1E-05 35.7 2.4 24 46-71 132-157 (172)
9 1jlj_A Gephyrin; globular alph 86.6 0.37 1.3E-05 35.9 2.5 28 41-70 134-163 (189)
10 4hhu_A OR280; engineered prote 78.1 15 0.00052 25.7 8.2 57 84-141 44-105 (170)
11 1qys_A TOP7; alpha-beta, novel 73.8 5.6 0.00019 25.8 4.4 50 88-145 23-72 (106)
12 1di6_A MOGA, molybdenum cofact 66.1 2.2 7.6E-05 31.9 1.4 16 47-64 129-145 (195)
13 1wjw_A Phosphoacetylglucosamin 65.5 28 0.00094 23.3 7.3 51 94-144 43-93 (112)
14 3rfq_A Pterin-4-alpha-carbinol 64.2 5.1 0.00018 29.7 3.1 22 47-70 153-175 (185)
15 1rwu_A Hypothetical UPF0250 pr 64.0 19 0.00063 24.4 5.7 56 87-142 42-101 (109)
16 2fts_A Gephyrin; gephyrin, neu 52.3 9.6 0.00033 31.6 3.1 24 46-71 303-328 (419)
17 2pa8_L DNA-directed RNA polyme 51.8 37 0.0013 22.1 5.4 53 92-144 22-80 (92)
18 1wu2_A MOEA protein, molybdopt 50.4 16 0.00054 30.1 4.1 39 19-71 277-317 (396)
19 2ctj_A Vigilin; K homology typ 48.0 23 0.00077 23.1 3.9 45 98-144 39-83 (95)
20 3pzy_A MOG; ssgcid, seattle st 47.2 12 0.00042 26.8 2.6 22 47-70 129-151 (164)
21 1uz5_A MOEA protein, 402AA lon 43.9 16 0.00054 30.2 3.1 24 46-71 296-321 (402)
22 2jsx_A Protein NAPD; TAT, proo 42.5 68 0.0023 20.9 6.0 37 104-142 28-65 (95)
23 1xpp_A TA1416, DNA-directed RN 42.0 76 0.0026 21.5 5.9 53 92-144 32-89 (115)
24 2ctf_A Vigilin; K homology typ 39.7 78 0.0027 20.7 6.0 41 99-144 50-90 (102)
25 1twf_K B13.6, DNA-directed RNA 39.1 63 0.0022 22.1 5.2 53 92-144 40-98 (120)
26 3r2c_J Protein NUSE, 30S ribos 38.0 47 0.0016 21.3 4.1 25 120-144 5-29 (83)
27 3le1_A Phosphotransferase syst 37.4 41 0.0014 21.5 3.8 27 119-145 59-86 (88)
28 1g8l_A Molybdopterin biosynthe 36.7 18 0.00063 29.9 2.5 24 46-71 293-318 (411)
29 3h0g_K DNA-directed RNA polyme 35.7 32 0.0011 23.7 3.2 53 92-144 39-97 (123)
30 2a10_A CCMK4, carbon dioxide c 35.4 69 0.0023 22.2 4.9 38 106-144 29-66 (125)
31 2w7v_A General secretion pathw 34.6 70 0.0024 21.0 4.6 36 106-141 25-61 (95)
32 3cim_A Carbon dioxide-concentr 34.6 74 0.0025 21.0 4.8 38 106-144 27-64 (99)
33 3d3c_J 30S ribosomal protein S 33.7 63 0.0021 20.8 4.2 26 120-145 10-35 (87)
34 2a1b_A CCMK2, carbon dioxide c 33.0 95 0.0033 21.1 5.3 38 106-144 27-64 (116)
35 2pjk_A 178AA long hypothetical 31.9 29 0.00098 25.2 2.6 22 47-70 147-170 (178)
36 1y51_A Phosphocarrier protein 31.0 79 0.0027 20.0 4.4 15 119-133 59-73 (88)
37 1kkl_H Phosphocarrier protein 30.2 80 0.0027 20.7 4.4 14 120-133 72-85 (100)
38 1ssz_A Pulmonary surfactant-as 29.4 9.2 0.00031 20.1 -0.4 13 20-33 11-23 (34)
39 2ewh_A Major carboxysome shell 28.8 1.2E+02 0.0042 19.8 5.1 38 106-144 31-68 (98)
40 2f7l_A 455AA long hypothetical 28.5 2.4E+02 0.0083 23.0 8.6 36 110-145 418-453 (455)
41 2gjh_A Designed protein; oblig 27.7 84 0.0029 18.4 3.6 26 120-145 3-28 (62)
42 2dwf_A Pulmonary surfactant-as 26.7 11 0.00039 20.1 -0.3 14 19-33 10-23 (34)
43 3ccd_A Phosphocarrier protein 26.5 78 0.0027 19.9 3.7 14 120-133 60-73 (85)
44 1sph_A Histidine-containing ph 25.0 1.2E+02 0.004 19.1 4.4 15 119-133 59-73 (88)
45 3bn4_A Carbon dioxide-concentr 24.8 1.6E+02 0.0055 20.2 5.3 39 106-145 27-65 (122)
46 2dka_A Phosphoacetylglucosamin 23.5 1.9E+02 0.0065 24.4 6.6 51 94-144 493-543 (544)
47 3dhx_A Methionine import ATP-b 23.2 1.3E+02 0.0043 19.6 4.4 52 90-143 30-88 (106)
48 3j20_L 30S ribosomal protein S 23.2 1.2E+02 0.0042 19.9 4.3 25 120-144 3-27 (102)
49 3mwb_A Prephenate dehydratase; 23.2 1.7E+02 0.0056 23.3 5.8 55 88-143 254-309 (313)
50 3pdk_A Phosphoglucosamine muta 23.0 2.6E+02 0.0089 23.1 7.3 51 95-145 412-463 (469)
51 4axj_A EUTM, ethanolamine carb 22.9 1.5E+02 0.0051 19.8 4.7 33 106-139 30-62 (104)
52 1ptf_A Histidine-containing ph 22.8 1.3E+02 0.0046 18.9 4.3 15 119-133 59-73 (88)
53 2h9z_A Hypothetical protein HP 22.6 60 0.002 20.7 2.6 56 85-142 18-78 (86)
54 3n79_A PDUT; FES cluster, BMC 22.5 1.6E+02 0.0054 21.6 5.3 40 106-146 27-66 (192)
55 1ka5_A Phosphocarrier protein 22.1 1.2E+02 0.0041 19.1 4.0 15 119-133 59-73 (88)
56 3nwg_A Microcompartments prote 22.0 1.7E+02 0.0059 21.2 5.3 41 106-147 27-67 (182)
57 1pch_A Phosphocarrier protein; 21.5 1.3E+02 0.0043 19.1 4.0 18 119-136 58-75 (88)
58 3ngk_A Propanediol utilization 21.1 1.7E+02 0.0059 19.4 4.7 32 106-138 36-67 (102)
59 1wvq_A Hypothetical protein PA 20.7 2.4E+02 0.0084 20.3 7.1 58 94-151 32-89 (167)
60 1rlh_A Conserved hypothetical 20.4 2.5E+02 0.0086 20.3 6.3 57 94-150 40-96 (173)
No 1
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=99.75 E-value=7.6e-19 Score=132.85 Aligned_cols=66 Identities=15% Similarity=0.222 Sum_probs=55.5
Q ss_pred hHHHHHHhh--CCCCCcccccceeccCCCceeeeCCCCcccEEEEc----eEEEecCCCCch-hHHHHHHHHHhHH
Q 031793 2 EVFEFLCLQ--FDLILGFPFQMALLPEGTTELLHHDKLLLPLIKCQ----NVIILTATNVTE-LDKEWNCLIELLR 70 (153)
Q Consensus 2 ~~~~~~~~~--~~~~~~~~~rqA~vP~ga~~il~N~~GtAPG~~i~----~v~~LPG~~vP~-m~~m~~~v~p~l~ 70 (153)
|++++++++ ++.++++++|||++|+|| ++|+|++|+|||++++ ++|+||| ||+ |++||+.+.|+|.
T Consensus 97 e~~~~i~~~~~~~~~~~~~~k~A~~P~ga-~~l~N~~g~apG~~~~~~~~~v~~lPG--vP~e~~~m~~~~~~~~~ 169 (172)
T 3kbq_A 97 DALAMIKKKYGQADLTPQRLKMAKIPPSC-RPIENPVGTAPGLICAVGGKKVIILPG--VPKEMEALLKAMEKDII 169 (172)
T ss_dssp HHHHHHHHHHC---CCHHHHGGGEECTTE-EEECCSSSSSCEEEEEETTEEEEEECS--SHHHHHHHHHHTHHHHC
T ss_pred HHHHHHHHHHcCCCCChHHHhhccCCCCC-EECcCCCCcCCeEEEEECCeEEEEeCC--CHHHHHHHHHHHHhhcC
Confidence 345544443 668999999999999999 9999999999999996 6999999 999 9999999999883
No 2
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=96.53 E-value=0.00062 Score=50.45 Aligned_cols=46 Identities=9% Similarity=0.080 Sum_probs=31.4
Q ss_pred ccceeccCCCceeeeCCCCcccEEEEceEEEecCCCCch-hHHHHH-HHHHhHH
Q 031793 19 FQMALLPEGTTELLHHDKLLLPLIKCQNVIILTATNVTE-LDKEWN-CLIELLR 70 (153)
Q Consensus 19 ~rqA~vP~ga~~il~N~~GtAPG~~i~~v~~LPG~~vP~-m~~m~~-~v~p~l~ 70 (153)
.+++..+.+| .+..|..|++.|- -||+||| +|. |+.||+ .++|.|.
T Consensus 123 ~~~~~~~~~a-~~~~~~~G~~~~~---~i~~LPG--~P~~~~~~~~~~v~P~L~ 170 (178)
T 3iwt_A 123 FNDPEVKAAA-YLTKASAGIIGKK---IVYLLPG--SPDAVKLALKELILPEVG 170 (178)
T ss_dssp HTSTTTGGGG-GGCCCEEEEETTE---EEEEECS--CHHHHHHHHHHTHHHHHH
T ss_pred hccccccccc-cccccceeeECCE---EEEECCC--CHHHHHHHHHHHHHHHHH
Confidence 3445556666 5555544544332 2899999 999 999997 4788874
No 3
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=95.15 E-value=0.0044 Score=45.53 Aligned_cols=49 Identities=12% Similarity=0.156 Sum_probs=36.2
Q ss_pred ccceeccCCCceeeeCCCC--cccEEEEc--eEEEecCCCCch-hHHHHHHHHHhHHh
Q 031793 19 FQMALLPEGTTELLHHDKL--LLPLIKCQ--NVIILTATNVTE-LDKEWNCLIELLRS 71 (153)
Q Consensus 19 ~rqA~vP~ga~~il~N~~G--tAPG~~i~--~v~~LPG~~vP~-m~~m~~~v~p~l~~ 71 (153)
.++++++.|. .+.+|..+ +++|+ +. -||.||| .|. +..+|+.+.|.|+.
T Consensus 104 ~~~~~~~~g~-~~~Pg~~~sr~~~G~-~~~~~v~~LPG--~P~s~~~~~~~~~P~L~~ 157 (167)
T 1uuy_A 104 LLFVMMQESL-KITPFAMLARSAAGI-RGSTLIINMPG--NPNAVAECMEALLPALKH 157 (167)
T ss_dssp HHHHHHHHHH-HHCGGGGGCCCCEEE-ETTEEEEEECS--STTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccc-ccCCCCcccceeEEE-ECCEEEEECCC--CHHHHHHHHHHHHHHHHH
Confidence 3445677777 77777654 68887 34 3999999 999 99999876687743
No 4
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=94.18 E-value=0.049 Score=40.31 Aligned_cols=34 Identities=9% Similarity=0.014 Sum_probs=26.2
Q ss_pred CCCCcccEEEEc--eEEEecCCCCch-hHHHHHHH---HHhHHh
Q 031793 34 HDKLLLPLIKCQ--NVIILTATNVTE-LDKEWNCL---IELLRS 71 (153)
Q Consensus 34 N~~GtAPG~~i~--~v~~LPG~~vP~-m~~m~~~v---~p~l~~ 71 (153)
++.|+| |+ +. .||.||| .|. ++.||+.+ +|++..
T Consensus 118 lsrg~a-g~-~~~~~v~~LPG--~P~~~~~~~~~~~~v~p~l~~ 157 (178)
T 2pbq_A 118 LSRQTA-GI-RGSCLIVNLPG--KPQSIKVCLDAVMPAIPYCID 157 (178)
T ss_dssp GCCCCE-EE-ETTEEEEEECS--SHHHHHHHHHHHGGGHHHHHH
T ss_pred ccccee-ee-ECCEEEEECCC--CHHHHHHHHHHHHHHHHHHHH
Confidence 466777 66 44 3999999 999 99999864 788754
No 5
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=93.86 E-value=0.092 Score=38.22 Aligned_cols=23 Identities=9% Similarity=0.213 Sum_probs=19.7
Q ss_pred eEEEecCCCCch-hHHHHHHHHHhHH
Q 031793 46 NVIILTATNVTE-LDKEWNCLIELLR 70 (153)
Q Consensus 46 ~v~~LPG~~vP~-m~~m~~~v~p~l~ 70 (153)
.||.||| .|. +..||+.++|+|.
T Consensus 124 ~v~~LPG--~P~~~~~~~~~v~p~l~ 147 (164)
T 2is8_A 124 LILNLPG--SPKGARESLEAVLPVLP 147 (164)
T ss_dssp EEEEECS--SHHHHHHHHHHHGGGHH
T ss_pred EEEECCC--CHHHHHHHHHHHHHHHH
Confidence 4999999 999 9999987778764
No 6
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=93.08 E-value=0.058 Score=39.45 Aligned_cols=43 Identities=9% Similarity=0.164 Sum_probs=26.0
Q ss_pred cceeccCCCceeeeCCCCcccEEEEceEEEecCCCCch-hHHHHHHHHHhHH
Q 031793 20 QMALLPEGTTELLHHDKLLLPLIKCQNVIILTATNVTE-LDKEWNCLIELLR 70 (153)
Q Consensus 20 rqA~vP~ga~~il~N~~GtAPG~~i~~v~~LPG~~vP~-m~~m~~~v~p~l~ 70 (153)
+||++|.+. -=+.+..+. | ..||.||| .|. ++.||+.+.|+|+
T Consensus 115 p~a~l~r~~-aG~~~~~~~--~---~~v~~LPG--~P~~~~~~~~~v~P~L~ 158 (167)
T 2g2c_A 115 HLAGLSRGI-VGVTGRDDH--A---ALIVNAPS--SSGGITDTWAVISPVIP 158 (167)
T ss_dssp ---CCCCCC-EEESCSSTT--C---CEEEEECS--SHHHHHHHHHHHGGGHH
T ss_pred Cceeeeccc-cceecCCCC--C---EEEEECCC--CHHHHHHHHHHHHHHHH
Confidence 678787774 222221100 0 23899999 999 9999996678774
No 7
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=92.53 E-value=0.097 Score=38.29 Aligned_cols=42 Identities=10% Similarity=0.056 Sum_probs=29.5
Q ss_pred cCCCceeeeCCCCcccEEEEc-eEEEecCCCCch-hHHHHH-HHHHhHHh
Q 031793 25 PEGTTELLHHDKLLLPLIKCQ-NVIILTATNVTE-LDKEWN-CLIELLRS 71 (153)
Q Consensus 25 P~ga~~il~N~~GtAPG~~i~-~v~~LPG~~vP~-m~~m~~-~v~p~l~~ 71 (153)
..|. ..+ +..++| |+.=. .||+||| .|. ++.||+ .+.|+|+.
T Consensus 117 ~pG~-~~~-~~r~~a-G~~~~~~v~~LPG--~P~~~~~~~~~~v~p~L~~ 161 (169)
T 1y5e_A 117 DIGS-SAM-LSRAIG-GTIGRKVVFSMPG--SSGAVRLAMNKLILPELGH 161 (169)
T ss_dssp SSGG-GGG-GCCCEE-EEETTEEEEEECS--SHHHHHHHHHHTHHHHHHH
T ss_pred CCCc-cee-ccccee-EEECCEEEEECCC--CHHHHHHHHHHHHHHHHHH
Confidence 3455 443 566666 76322 4999999 999 999998 57888753
No 8
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=87.24 E-value=0.32 Score=35.65 Aligned_cols=24 Identities=13% Similarity=0.342 Sum_probs=20.5
Q ss_pred eEEEecCCCCch-hHHHHHH-HHHhHHh
Q 031793 46 NVIILTATNVTE-LDKEWNC-LIELLRS 71 (153)
Q Consensus 46 ~v~~LPG~~vP~-m~~m~~~-v~p~l~~ 71 (153)
.||+||| .|. ++.||+. +.|+|..
T Consensus 132 ~v~~LPG--~P~~~~~~~~~~v~p~L~~ 157 (172)
T 1mkz_A 132 LILAMPG--STKACRTAWENIIAPQLDA 157 (172)
T ss_dssp EEEEECS--SHHHHHHHHHHTHHHHHCT
T ss_pred EEEECCC--CHHHHHHHHHHHHHHHHhh
Confidence 3899999 999 9999985 7898854
No 9
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=86.61 E-value=0.37 Score=35.95 Aligned_cols=28 Identities=14% Similarity=0.186 Sum_probs=21.4
Q ss_pred EEEEc-eEEEecCCCCch-hHHHHHHHHHhHH
Q 031793 41 LIKCQ-NVIILTATNVTE-LDKEWNCLIELLR 70 (153)
Q Consensus 41 G~~i~-~v~~LPG~~vP~-m~~m~~~v~p~l~ 70 (153)
|+.=+ -|+.||| .|. +..||+.+.|+|.
T Consensus 134 G~~~~~~v~~LPG--~P~s~~~~~~~v~P~L~ 163 (189)
T 1jlj_A 134 GIRGKTLIINLPG--SKKGSQECFQFILPALP 163 (189)
T ss_dssp EEETTEEEEEECS--SHHHHHHHHHHHGGGHH
T ss_pred EEECCeEEEECCC--CHHHHHHHHHHHHHHHH
Confidence 65312 3899999 999 9999997778774
No 10
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=78.06 E-value=15 Score=25.71 Aligned_cols=57 Identities=25% Similarity=0.437 Sum_probs=35.4
Q ss_pred EEE-eCCChhh---hHHHHHHhhhhCCCcEEEEccc-cCCeeEEEEEEecCHHHHHHHHHHHH
Q 031793 84 SLT-TNLSDLE---AAQPLSKLCLEFPDLHIGCYRK-SRQGPLIISFEGKDQARIEAAIESLF 141 (153)
Q Consensus 84 ~l~-~g~~ES~---l~~~L~~l~~~~~~v~ig~yp~-~~~~~v~l~~~g~~~~~~~~~~~~l~ 141 (153)
.++ +|+||.. ++..-..+..+| ++.+.+.-- .+.+-..|.++|+|-+.+++|..+..
T Consensus 44 ~i~itgvpeqvrkelakeaerl~~ef-ni~v~y~imgsgsgvm~i~f~gddlea~ekalkemi 105 (170)
T 4hhu_A 44 VIVITGVPEQVRKELAKEAERLKAEF-NINVQYQIMGSGSGVMVIVFEGDDLEALEKALKEMI 105 (170)
T ss_dssp EEEEESCCHHHHHHHHHHHHHHHHHH-TCEEEEEEECTTCCEEEEEEECSCHHHHHHHHHHHH
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHHhc-ceEEEEEEEeCCceEEEEEEecCcHHHHHHHHHHHH
Confidence 345 7999864 444444556666 444433331 22345779999999888877766554
No 11
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=73.83 E-value=5.6 Score=25.84 Aligned_cols=50 Identities=20% Similarity=0.179 Sum_probs=35.3
Q ss_pred CCChhhhHHHHHHhhhhCCCcEEEEccccCCeeEEEEEEecCHHHHHHHHHHHHHHcc
Q 031793 88 NLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFH 145 (153)
Q Consensus 88 g~~ES~l~~~L~~l~~~~~~v~ig~yp~~~~~~v~l~~~g~~~~~~~~~~~~l~~~l~ 145 (153)
-..||++...|+++.+- .-+.+..+|||++.+....+.++..+.+.+-|.
T Consensus 23 vtteselqkvlnelmdy--------ikkqgakrvrisitartkkeaekfaailikvfa 72 (106)
T 1qys_A 23 VTTESELQKVLNELMDY--------IKKQGAKRVRISITARTKKEAEKFAAILIKVFA 72 (106)
T ss_dssp ESSSSHHHHHHHHHHHH--------HHHHCCSEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EeeHHHHHHHHHHHHHH--------HHhcCCcEEEEEEEecchhHHHHHHHHHHHHHH
Confidence 34799999999988542 123444679999998887777777776665544
No 12
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=66.13 E-value=2.2 Score=31.86 Aligned_cols=16 Identities=6% Similarity=0.212 Sum_probs=14.6
Q ss_pred EEEecCCCCch-hHHHHHH
Q 031793 47 VIILTATNVTE-LDKEWNC 64 (153)
Q Consensus 47 v~~LPG~~vP~-m~~m~~~ 64 (153)
|+.||| .|. ++.+|+.
T Consensus 129 v~~LPG--~P~a~~~~~~~ 145 (195)
T 1di6_A 129 ILNLPG--QPKSIKETLEG 145 (195)
T ss_dssp EEEECS--SHHHHHHHHHE
T ss_pred EEECCC--CHHHHHHHHHH
Confidence 899999 999 9999985
No 13
>1wjw_A Phosphoacetylglucosamine mutase; carbohydrate metabolism, structural genomics, riken structural genomics/proteomics initiative, RSGI, isomerase; NMR {Mus musculus} SCOP: d.129.2.1
Probab=65.52 E-value=28 Score=23.33 Aligned_cols=51 Identities=6% Similarity=-0.016 Sum_probs=35.6
Q ss_pred hHHHHHHhhhhCCCcEEEEccccCCeeEEEEEEecCHHHHHHHHHHHHHHc
Q 031793 94 AAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKF 144 (153)
Q Consensus 94 l~~~L~~l~~~~~~v~ig~yp~~~~~~v~l~~~g~~~~~~~~~~~~l~~~l 144 (153)
..+.+..+...+.+--+-..|+..+-.+|+.+++.+.+.+++..+.+.+.+
T Consensus 43 ~~~~idgl~~~~~~gwvlvRpSGTEP~irvy~Ea~~~~~~~~~~~~~~~~i 93 (112)
T 1wjw_A 43 LQEAINDLVKKYTLARAFVRPSGTEDIVRVYAEANSQESADRLAYEVSLLV 93 (112)
T ss_dssp HHHHHHHHHHHSSSEEEEEECSSSSSSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhhhhhcEEEEcCCcEEEEEeCCCccEEEEEEEECCHHHHHHHHHHHHHHH
Confidence 455666666666554566778665667999999999887777666665544
No 14
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=64.22 E-value=5.1 Score=29.65 Aligned_cols=22 Identities=18% Similarity=0.111 Sum_probs=18.3
Q ss_pred EEEecCCCCch-hHHHHHHHHHhHH
Q 031793 47 VIILTATNVTE-LDKEWNCLIELLR 70 (153)
Q Consensus 47 v~~LPG~~vP~-m~~m~~~v~p~l~ 70 (153)
||.||| .|. ....|+.+.|.|.
T Consensus 153 V~~LPG--nP~aa~~~~~~l~P~L~ 175 (185)
T 3rfq_A 153 VVNLAG--SRYAVRDGMATLNPLAA 175 (185)
T ss_dssp EEEECS--SHHHHHHHHHHHHHHHH
T ss_pred EEECCC--CHHHHHHHHHHHHHHHH
Confidence 899999 998 8788877777774
No 15
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=63.97 E-value=19 Score=24.44 Aligned_cols=56 Identities=16% Similarity=0.156 Sum_probs=37.8
Q ss_pred eCCChhhhHHHHHHhhhh-CC-CcEEEEccccCCe--eEEEEEEecCHHHHHHHHHHHHH
Q 031793 87 TNLSDLEAAQPLSKLCLE-FP-DLHIGCYRKSRQG--PLIISFEGKDQARIEAAIESLFK 142 (153)
Q Consensus 87 ~g~~ES~l~~~L~~l~~~-~~-~v~ig~yp~~~~~--~v~l~~~g~~~~~~~~~~~~l~~ 142 (153)
+|..+.++.+.+.++..+ .| +..+..-++..+. .|.+++...+.+.++++.++|.+
T Consensus 42 IG~a~~~~~~~V~~vv~~~~p~d~~~~~r~Ss~GkY~Svtv~v~v~S~eQv~aiY~~L~~ 101 (109)
T 1rwu_A 42 MGQALPELVDQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSITINATHIEQVETLYEELGK 101 (109)
T ss_dssp EEECCTTHHHHHHHHHHHHSSSCCCEEEEESSCSSEEEEEEEECCSSHHHHHHHHHHHSC
T ss_pred EEECcHHHHHHHHHHHHHhCCCCCCceecCCCCCeEEEEEEEEEECCHHHHHHHHHHHhc
Confidence 566666677777666444 35 5555666655442 47788888889988888887764
No 16
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=52.30 E-value=9.6 Score=31.64 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=20.1
Q ss_pred eEEEecCCCCch-hHHHHH-HHHHhHHh
Q 031793 46 NVIILTATNVTE-LDKEWN-CLIELLRS 71 (153)
Q Consensus 46 ~v~~LPG~~vP~-m~~m~~-~v~p~l~~ 71 (153)
-||.||| .|. +..+|+ .+.|+|+.
T Consensus 303 ~v~~LPG--~P~sa~~~~~~~v~P~L~~ 328 (419)
T 2fts_A 303 IIFALPG--NPVSAVVTCNLFVVPALRK 328 (419)
T ss_dssp EEEEECS--SHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCC--CHHHHHHHHHHHHHHHHHH
Confidence 3899999 998 889997 57898854
No 17
>2pa8_L DNA-directed RNA polymerase subunit L; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_L 3hkz_L 2waq_L 2wb1_L 2y0s_L
Probab=51.84 E-value=37 Score=22.06 Aligned_cols=53 Identities=11% Similarity=0.086 Sum_probs=36.5
Q ss_pred hhhHHHHHHhhhhCCCcEEEEccccC--C--eeEEEEEEec-CH-HHHHHHHHHHHHHc
Q 031793 92 LEAAQPLSKLCLEFPDLHIGCYRKSR--Q--GPLIISFEGK-DQ-ARIEAAIESLFKKF 144 (153)
Q Consensus 92 S~l~~~L~~l~~~~~~v~ig~yp~~~--~--~~v~l~~~g~-~~-~~~~~~~~~l~~~l 144 (153)
-.|...|+....+.|+|.++.|-... . ..+||...|. +. +.+.+|++.|.+.+
T Consensus 22 HTLgN~Lr~~L~~~p~V~fagY~vpHPl~~~~~lrIqT~~~~~p~~al~~a~~~l~~~~ 80 (92)
T 2pa8_L 22 HTLGNLIAGTLRRISGVSFASYYQPHPLSDKIIVKILTDGSITPKDALLKAIENIRGMT 80 (92)
T ss_dssp HHHHHHHHHHHHTSTTEEEEEEECSSTTSCCEEEEEEECSSSCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhcCCCeeEEEeecCCCCCCceEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 56889998887788999998886433 2 3467777653 43 56677777766544
No 18
>1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1xi8_A
Probab=50.42 E-value=16 Score=30.12 Aligned_cols=39 Identities=13% Similarity=0.109 Sum_probs=27.3
Q ss_pred ccceeccCCCceeeeCCCCcccEEEEceEEEecCCCCch-hHHHHHH-HHHhHHh
Q 031793 19 FQMALLPEGTTELLHHDKLLLPLIKCQNVIILTATNVTE-LDKEWNC-LIELLRS 71 (153)
Q Consensus 19 ~rqA~vP~ga~~il~N~~GtAPG~~i~~v~~LPG~~vP~-m~~m~~~-v~p~l~~ 71 (153)
.++++.|-.. ..+ | .-|+.||| .|. ...+|+. +.|.|+.
T Consensus 277 ~~va~~PG~p-~~~--------g---~~v~~LPG--~P~sa~~~~~~~v~P~L~~ 317 (396)
T 1wu2_A 277 HGTTIKPGRP-FGY--------G---EKVFIMSG--YPVSVFAQFNLFVKHALAK 317 (396)
T ss_dssp ESBSEESCTT-CEE--------E---TTEEECCS--SHHHHHHHHHHTHHHHHHH
T ss_pred eeecccCCCc-eEc--------c---CeEEECCC--CHHHHHHHHHHHHHHHHHH
Confidence 3456666665 444 1 55899999 998 8899985 5687753
No 19
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=48.02 E-value=23 Score=23.13 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=28.2
Q ss_pred HHHhhhhCCCcEEEEccccCCeeEEEEEEecCHHHHHHHHHHHHHHc
Q 031793 98 LSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKF 144 (153)
Q Consensus 98 L~~l~~~~~~v~ig~yp~~~~~~v~l~~~g~~~~~~~~~~~~l~~~l 144 (153)
++++..++++++|-+ |..+...-++++.|.+. .+++|.+.|....
T Consensus 39 Ir~I~eetggv~I~i-~~~g~~~~~V~I~G~~~-~v~~A~~~I~~iv 83 (95)
T 2ctj_A 39 IRSIMEECGGVHIHF-PVEGSGSDTVVIRGPSS-DVEKAKKQLLHLA 83 (95)
T ss_dssp HHHHHHHHTSCEEEC-CCTTTTCCEEEEESCHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEe-CCCCCCcceEEEEcCHH-HHHHHHHHHHHHH
Confidence 356666666788766 54433333566777666 6777777776654
No 20
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=47.19 E-value=12 Score=26.82 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=16.9
Q ss_pred EEEecCCCCch-hHHHHHHHHHhHH
Q 031793 47 VIILTATNVTE-LDKEWNCLIELLR 70 (153)
Q Consensus 47 v~~LPG~~vP~-m~~m~~~v~p~l~ 70 (153)
|+.||| -|. ....|+.+.|.|.
T Consensus 129 v~~LPG--~P~aa~~~~~~v~P~l~ 151 (164)
T 3pzy_A 129 IVNLPG--SPGGVRDGLGVLAGVLD 151 (164)
T ss_dssp EEEECS--SHHHHHHHHHHHHTTHH
T ss_pred EEECCC--CHHHHHHHHHHHHHHHH
Confidence 899999 997 6677776667663
No 21
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=43.90 E-value=16 Score=30.22 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=19.8
Q ss_pred eEEEecCCCCch-hHHHHHH-HHHhHHh
Q 031793 46 NVIILTATNVTE-LDKEWNC-LIELLRS 71 (153)
Q Consensus 46 ~v~~LPG~~vP~-m~~m~~~-v~p~l~~ 71 (153)
-||.||| .|. +..+|+. +.|.|+.
T Consensus 296 ~v~~LPG--~P~sa~~~~~~~v~P~L~~ 321 (402)
T 1uz5_A 296 PVFGLPG--YPTSCLTNFTLLVVPLLLR 321 (402)
T ss_dssp EEEEECS--SHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCC--CHHHHHHHHHHHHHHHHHH
Confidence 3899999 998 8899984 7788754
No 22
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=42.48 E-value=68 Score=20.85 Aligned_cols=37 Identities=27% Similarity=0.449 Sum_probs=25.8
Q ss_pred hCCCcEEEE-ccccCCeeEEEEEEecCHHHHHHHHHHHHH
Q 031793 104 EFPDLHIGC-YRKSRQGPLIISFEGKDQARIEAAIESLFK 142 (153)
Q Consensus 104 ~~~~v~ig~-yp~~~~~~v~l~~~g~~~~~~~~~~~~l~~ 142 (153)
..|++++-. +.. .+++.+++++++.+.+.+...+|++
T Consensus 28 ~ipgvEi~~~~~~--~GkiVV~iEa~~~~~l~~~i~~I~~ 65 (95)
T 2jsx_A 28 AFPGCEVAVSDAP--SGQLIVVVEAEDSETLIQTIESVRN 65 (95)
T ss_dssp TSTTEEEEEEETT--TTEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEecCC--CCCEEEEEEeCCHHHHHHHHHHHhc
Confidence 457887622 332 4689999999998877777666654
No 23
>1xpp_A TA1416, DNA-directed RNA polymerase subunit L; structural genomics, protein structure initiative, MCSG; 1.60A {Thermoplasma acidophilum} SCOP: d.74.3.2
Probab=42.03 E-value=76 Score=21.55 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=35.5
Q ss_pred hhhHHHHHHhhhhCCCcEEEEccccC--C--eeEEEEEEecCH-HHHHHHHHHHHHHc
Q 031793 92 LEAAQPLSKLCLEFPDLHIGCYRKSR--Q--GPLIISFEGKDQ-ARIEAAIESLFKKF 144 (153)
Q Consensus 92 S~l~~~L~~l~~~~~~v~ig~yp~~~--~--~~v~l~~~g~~~-~~~~~~~~~l~~~l 144 (153)
-.|...|+....+.|+|.++.|-... . ..+||...|... +.+.+|++.|.+.+
T Consensus 32 HTLgNlLr~~Llkdp~V~fAgY~vpHPle~~~~lrIqT~~~~p~eaL~~al~~L~~~~ 89 (115)
T 1xpp_A 32 NTLLRTLVEEILKDDQVDEARYYIKHPVIDNPQIYVRVKSGKPQSAIKRAVRKLSKLY 89 (115)
T ss_dssp HHHHHHHHHHHTTCTTEEEEEEECSSTTTSCCEEEEEESSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHhcCCCeEEEEeecCCCCCCccEEEEEeCCCChHHHHHHHHHHHHHHH
Confidence 56899998887888999998886433 2 347777766543 44566666555443
No 24
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=39.73 E-value=78 Score=20.70 Aligned_cols=41 Identities=22% Similarity=0.397 Sum_probs=25.9
Q ss_pred HHhhhhCCCcEEEEccccCCeeEEEEEEecCHHHHHHHHHHHHHHc
Q 031793 99 SKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKF 144 (153)
Q Consensus 99 ~~l~~~~~~v~ig~yp~~~~~~v~l~~~g~~~~~~~~~~~~l~~~l 144 (153)
.++..++++++|.+ |+. +. .++++|. .+.+++|...|...+
T Consensus 50 k~i~~~~~~v~I~f-p~~-~~--~ItI~G~-~~~V~~a~~~I~~~v 90 (102)
T 2ctf_A 50 AKITQQMPKVHIEF-TEG-ED--KITLEGP-TEDVSVAQEQIEGMV 90 (102)
T ss_dssp HHHHHHCSSSEEEE-CSS-SC--EEEEEEC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEEe-CCC-CC--EEEEECC-HHHHHHHHHHHHHHH
Confidence 66666677888864 542 22 4677776 566667766665544
No 25
>1twf_K B13.6, DNA-directed RNA polymerase II 13.6 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.2 PDB: 1i3q_K 1i6h_K 1k83_K* 1nik_K 1nt9_K 1pqv_K 1r5u_K 1r9s_K* 1r9t_K* 1sfo_K* 1twa_K* 1twc_K* 1i50_K* 1twg_K* 1twh_K* 1wcm_K 1y1v_K 1y1w_K 1y1y_K 1y77_K* ...
Probab=39.12 E-value=63 Score=22.07 Aligned_cols=53 Identities=15% Similarity=0.162 Sum_probs=35.6
Q ss_pred hhhHHHHHHhhhhCCCcEEEEccccC--Ce--eEEEEEEec-CH-HHHHHHHHHHHHHc
Q 031793 92 LEAAQPLSKLCLEFPDLHIGCYRKSR--QG--PLIISFEGK-DQ-ARIEAAIESLFKKF 144 (153)
Q Consensus 92 S~l~~~L~~l~~~~~~v~ig~yp~~~--~~--~v~l~~~g~-~~-~~~~~~~~~l~~~l 144 (153)
-.|...|+....+.|+|.++.|-... .. .+||...|. +. +.+.+|++.|.+.+
T Consensus 40 HTLgNlLr~~Llk~p~V~fAgY~vpHPl~~~~~lrIqT~~~~~p~eaL~~a~~~L~~~~ 98 (120)
T 1twf_K 40 HTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKL 98 (120)
T ss_dssp HHHHHHHHHHHTTCTTEEEEEEECSCTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhhCCCeeEEeeecCCCCCCccEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 56899998887788999998886433 22 466666653 43 55667766665543
No 26
>3r2c_J Protein NUSE, 30S ribosomal protein S10; cross species NUSB-NUSE-RNA interaction; HET: PEG; 1.90A {Aquifex aeolicus} PDB: 3r2d_J
Probab=37.97 E-value=47 Score=21.25 Aligned_cols=25 Identities=8% Similarity=0.320 Sum_probs=21.6
Q ss_pred eEEEEEEecCHHHHHHHHHHHHHHc
Q 031793 120 PLIISFEGKDQARIEAAIESLFKKF 144 (153)
Q Consensus 120 ~v~l~~~g~~~~~~~~~~~~l~~~l 144 (153)
++||+++|.|...++++++.+.+..
T Consensus 5 kiRI~L~S~d~~~Ld~~~~~Iv~~a 29 (83)
T 3r2c_J 5 KIRIKLRAYDHRLLDQSVKQIIETV 29 (83)
T ss_dssp CEEEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEECCHHHHHHHHHHHHHHH
Confidence 5899999999999999999887654
No 27
>3le1_A Phosphotransferase system, HPR-related proteins; HPR PTS phosphotransfer, kinase; 1.51A {Thermoanaerobacter tengcongensis} SCOP: d.94.1.0 PDB: 3le3_A 3lnw_A 3lfg_A 3le5_A
Probab=37.40 E-value=41 Score=21.46 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=17.0
Q ss_pred eeEEEEEEecCHHH-HHHHHHHHHHHcc
Q 031793 119 GPLIISFEGKDQAR-IEAAIESLFKKFH 145 (153)
Q Consensus 119 ~~v~l~~~g~~~~~-~~~~~~~l~~~l~ 145 (153)
..++|+++|.|++. ++++.+.+.+.|+
T Consensus 59 ~~i~i~a~G~De~~A~~~l~~l~~~~fg 86 (88)
T 3le1_A 59 NVVKLSAEGDDEEEAIKALVDLIESKFG 86 (88)
T ss_dssp CEEEEEEESTTHHHHHHHHHHHHHTTTT
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHhccC
Confidence 35899999999764 3444444444444
No 28
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=36.70 E-value=18 Score=29.87 Aligned_cols=24 Identities=13% Similarity=-0.057 Sum_probs=19.5
Q ss_pred eEEEecCCCCch-hHHHHH-HHHHhHHh
Q 031793 46 NVIILTATNVTE-LDKEWN-CLIELLRS 71 (153)
Q Consensus 46 ~v~~LPG~~vP~-m~~m~~-~v~p~l~~ 71 (153)
-||.||| .|. ...+|+ .+.|.|+.
T Consensus 293 ~v~~LPG--nP~sa~~~~~~~v~P~L~~ 318 (411)
T 1g8l_A 293 WFCGLPG--NPVSATLTFYQLVQPLLAK 318 (411)
T ss_dssp EEEECCS--SHHHHHHHHHHTHHHHHHH
T ss_pred EEEEcCC--ChHHHHHHHHHHHHHHHHH
Confidence 3899999 998 888887 47888743
No 29
>3h0g_K DNA-directed RNA polymerase II subunit RPB11; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=35.74 E-value=32 Score=23.74 Aligned_cols=53 Identities=17% Similarity=0.110 Sum_probs=34.9
Q ss_pred hhhHHHHHHhhhhCCCcEEEEcccc--CCe--eEEEEEEec-C-HHHHHHHHHHHHHHc
Q 031793 92 LEAAQPLSKLCLEFPDLHIGCYRKS--RQG--PLIISFEGK-D-QARIEAAIESLFKKF 144 (153)
Q Consensus 92 S~l~~~L~~l~~~~~~v~ig~yp~~--~~~--~v~l~~~g~-~-~~~~~~~~~~l~~~l 144 (153)
-+|...|+....+.|+|.++.|-.. ... .+||...|. + .+.+.+|++.|.+.+
T Consensus 39 HTLgNlLr~~Llk~p~V~fAgY~vpHPle~~~~lrIqT~~~~~p~eaL~~al~~L~~~~ 97 (123)
T 3h0g_K 39 HTLANMLANQLLSDERVLFAGYKVPHPLNHNFILRVQTVEDCSPKQVIVDAAKSLITHL 97 (123)
T ss_dssp SSHHHHHHHTGGGSTTCSCBCCBCSCTTSCEEEEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHhcCCCeeEeeecCCCCCCCceEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 5689999988888899998888533 233 355555542 3 456666666665543
No 30
>2a10_A CCMK4, carbon dioxide concentrating mechanism protein CC 4; cyclic hexamer, C6 point symmetry, carboxysome; 1.80A {Synechocystis SP} SCOP: d.58.56.1 PDB: 2a18_A
Probab=35.41 E-value=69 Score=22.16 Aligned_cols=38 Identities=13% Similarity=0.286 Sum_probs=26.3
Q ss_pred CCcEEEEccccCCeeEEEEEEecCHHHHHHHHHHHHHHc
Q 031793 106 PDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKF 144 (153)
Q Consensus 106 ~~v~ig~yp~~~~~~v~l~~~g~~~~~~~~~~~~l~~~l 144 (153)
-+|++..|-....+.+.+.++| |-+.+++|.+...+..
T Consensus 29 AnVelv~~e~~~~G~~~vii~G-DVsaV~aAveag~~~~ 66 (125)
T 2a10_A 29 GRITIVGYIRAGSARFTLNIRG-DVQEVKTAMAAGIDAI 66 (125)
T ss_dssp SSCEEEEEEEEETTEEEEEEEE-CHHHHHHHHHHHHHHH
T ss_pred cCcEEEEEEecCCCEEEEEEEE-cHHHHHHHHHHHHHHH
Confidence 4899999887666778888888 5555555555544433
No 31
>2w7v_A General secretion pathway protein L; transport, type II secretion, transport protein; 2.30A {Vibrio parahaemolyticus}
Probab=34.60 E-value=70 Score=20.97 Aligned_cols=36 Identities=25% Similarity=0.292 Sum_probs=20.9
Q ss_pred CCcEEEEccccC-CeeEEEEEEecCHHHHHHHHHHHH
Q 031793 106 PDLHIGCYRKSR-QGPLIISFEGKDQARIEAAIESLF 141 (153)
Q Consensus 106 ~~v~ig~yp~~~-~~~v~l~~~g~~~~~~~~~~~~l~ 141 (153)
|++++-+.--.. .+.++|.+.++|=+.+|++.+.+.
T Consensus 25 p~l~~~sLryD~~R~ELrlq~~A~dF~~~E~lr~~l~ 61 (95)
T 2w7v_A 25 KDLEITSFKYDGQRGEVRIHARSSDFQPFEQARVKLA 61 (95)
T ss_dssp TTCEEEEEEEETTTTEEEEEEEESSSHHHHHHHHHHH
T ss_pred CCceEEEEeecCCCCeEEEEEecCCHHHHHHHHHHhh
Confidence 566666655322 245777777766666666655553
No 32
>3cim_A Carbon dioxide-concentrating mechanism protein CC 2; hexamer, structural protein; 1.30A {Synechocystis SP} PDB: 3dnc_A 3dn9_A
Probab=34.60 E-value=74 Score=20.96 Aligned_cols=38 Identities=16% Similarity=0.314 Sum_probs=26.4
Q ss_pred CCcEEEEccccCCeeEEEEEEecCHHHHHHHHHHHHHHc
Q 031793 106 PDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKF 144 (153)
Q Consensus 106 ~~v~ig~yp~~~~~~v~l~~~g~~~~~~~~~~~~l~~~l 144 (153)
-+|++..|-....+.+.+.++| |-+.+++|.+...+..
T Consensus 27 A~V~lv~~~~~~~G~~~vii~G-dVsaV~~Av~ag~~~~ 64 (99)
T 3cim_A 27 ARVTLVGYEKIGSGRVTVIVRG-DVSEVQASVSAGIEAA 64 (99)
T ss_dssp SSEEEEEEEEEETTEEEEEEEE-CHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEecCCcEEEEEEEE-cHHHHHHHHHHHHHHH
Confidence 4899999887666788888888 5555555555544433
No 33
>3d3c_J 30S ribosomal protein S10, N utilization substance protein B; NUSB, NUSE, phage lambda, lambda N antitermination antitermination; 2.60A {Escherichia coli} PDB: 2kvq_E 3d3b_J* 3imq_J
Probab=33.68 E-value=63 Score=20.81 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=22.3
Q ss_pred eEEEEEEecCHHHHHHHHHHHHHHcc
Q 031793 120 PLIISFEGKDQARIEAAIESLFKKFH 145 (153)
Q Consensus 120 ~v~l~~~g~~~~~~~~~~~~l~~~l~ 145 (153)
++||+++|.|...++++++.+.+...
T Consensus 10 kirI~L~S~d~~~Ld~~~~~Iv~~ak 35 (87)
T 3d3c_J 10 RIRIRLKAFDHRLIDQATAEIVETAK 35 (87)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEECCHHHHHHHHHHHHHHHH
Confidence 69999999999999999998876543
No 34
>2a1b_A CCMK2, carbon dioxide concentrating mechanism protein CC 2; cyclic hexamer, C6 point symmetry, carboxysome; 2.90A {Synechocystis SP} SCOP: d.58.56.1
Probab=33.02 E-value=95 Score=21.11 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=27.1
Q ss_pred CCcEEEEccccCCeeEEEEEEecCHHHHHHHHHHHHHHc
Q 031793 106 PDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKF 144 (153)
Q Consensus 106 ~~v~ig~yp~~~~~~v~l~~~g~~~~~~~~~~~~l~~~l 144 (153)
-+|++..|-....+.+.+.++| |-+.+++|.+...+..
T Consensus 27 AnVelv~~~~~~~G~~~vii~G-DVsaV~aAveag~~~~ 64 (116)
T 2a1b_A 27 ARVTLVGYEKIGSGRVTVIVRG-DVSGVQASVSAGIEAA 64 (116)
T ss_dssp SSCEEEEEEECSSSEEEEEEES-CHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEecCCcEEEEEEEE-cHHHHHHHHHHHHHHH
Confidence 4899999987766788888998 5555566655554443
No 35
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=31.93 E-value=29 Score=25.15 Aligned_cols=22 Identities=9% Similarity=0.211 Sum_probs=17.3
Q ss_pred EEEecCCCCch-hHHHHH-HHHHhHH
Q 031793 47 VIILTATNVTE-LDKEWN-CLIELLR 70 (153)
Q Consensus 47 v~~LPG~~vP~-m~~m~~-~v~p~l~ 70 (153)
|+.||| -|. ....|+ .+.|.|.
T Consensus 147 v~~LPG--~P~aa~~~~~~~v~P~l~ 170 (178)
T 2pjk_A 147 VYLLPG--SPDAVKLALKELILPEVG 170 (178)
T ss_dssp EEEECS--CHHHHHHHHHHTHHHHHH
T ss_pred EEECCC--CcHHHHHHHHHHHHHHHH
Confidence 899999 997 667776 5778774
No 36
>1y51_A Phosphocarrier protein HPR; bacillus stearothermophilus HPR F29W mutant, transport protein; 1.65A {Geobacillus stearothermophilus} PDB: 1y50_A 1y4y_A 2nzu_L* 1rzr_T* 2nzv_L* 2oen_L* 2fep_S* 3oqm_S* 3oqn_S* 3oqo_S*
Probab=30.97 E-value=79 Score=19.99 Aligned_cols=15 Identities=33% Similarity=0.463 Sum_probs=11.5
Q ss_pred eeEEEEEEecCHHHH
Q 031793 119 GPLIISFEGKDQARI 133 (153)
Q Consensus 119 ~~v~l~~~g~~~~~~ 133 (153)
..++|+++|+|++.+
T Consensus 59 ~~i~i~~~G~De~~A 73 (88)
T 1y51_A 59 ATIKITAEGADAAEA 73 (88)
T ss_dssp CEEEEEEESTTHHHH
T ss_pred CEEEEEEeCCCHHHH
Confidence 358899999997644
No 37
>1kkl_H Phosphocarrier protein HPR; phosphorylation, protein kinase, bacteria, protein/protein interaction, transferase; 2.80A {Bacillus subtilis} SCOP: d.94.1.1 PDB: 1kkm_H*
Probab=30.21 E-value=80 Score=20.75 Aligned_cols=14 Identities=29% Similarity=0.406 Sum_probs=11.1
Q ss_pred eEEEEEEecCHHHH
Q 031793 120 PLIISFEGKDQARI 133 (153)
Q Consensus 120 ~v~l~~~g~~~~~~ 133 (153)
.++|+++|+|++++
T Consensus 72 ~i~i~a~G~Dee~A 85 (100)
T 1kkl_H 72 EITISASGADENDA 85 (100)
T ss_dssp EEEEEEESTTHHHH
T ss_pred EEEEEEeCCCHHHH
Confidence 58899999997644
No 38
>1ssz_A Pulmonary surfactant-associated protein B; LUNG surfactant protein, saposin, surface active protein; NMR {Synthetic}
Probab=29.39 E-value=9.2 Score=20.07 Aligned_cols=13 Identities=31% Similarity=0.654 Sum_probs=10.8
Q ss_pred cceeccCCCceeee
Q 031793 20 QMALLPEGTTELLH 33 (153)
Q Consensus 20 rqA~vP~ga~~il~ 33 (153)
-||++|+|. +.++
T Consensus 11 iqa~ipk~g-rmlp 23 (34)
T 1ssz_A 11 IQAMIPKGG-RMLP 23 (34)
T ss_dssp HHHHCSSSC-CCCH
T ss_pred HHHHccccc-hhhH
Confidence 479999998 8776
No 39
>2ewh_A Major carboxysome shell protein 1A; bacterial microcompartment domain; 1.40A {Halothiobacillus neapolitanus} SCOP: d.58.56.1 PDB: 2g13_A 3h8y_A
Probab=28.75 E-value=1.2e+02 Score=19.82 Aligned_cols=38 Identities=11% Similarity=0.144 Sum_probs=25.2
Q ss_pred CCcEEEEccccCCeeEEEEEEecCHHHHHHHHHHHHHHc
Q 031793 106 PDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKF 144 (153)
Q Consensus 106 ~~v~ig~yp~~~~~~v~l~~~g~~~~~~~~~~~~l~~~l 144 (153)
-+|++..|-+.+.+.+.+.++|+ -..++++.+...+..
T Consensus 31 A~V~l~~~~~~~~g~~tv~i~Gd-v~aV~aAv~ag~~~~ 68 (98)
T 2ewh_A 31 AEVRLVGRQFVGGGYVTVLVRGE-TGAVNAAVRAGADAC 68 (98)
T ss_dssp SSEEEEEEEEEETTEEEEEEEEC-HHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEccCCeEEEEEEEEc-HHHHHHHHHHHHHHH
Confidence 48999988876666777778885 444555555554433
No 40
>2f7l_A 455AA long hypothetical phospho-sugar mutase; phosphomannomutase, phosphoglucomutase, isomerase; 2.80A {Sulfolobus tokodaii}
Probab=28.47 E-value=2.4e+02 Score=23.02 Aligned_cols=36 Identities=17% Similarity=0.118 Sum_probs=27.2
Q ss_pred EEEccccCCeeEEEEEEecCHHHHHHHHHHHHHHcc
Q 031793 110 IGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFH 145 (153)
Q Consensus 110 ig~yp~~~~~~v~l~~~g~~~~~~~~~~~~l~~~l~ 145 (153)
+-..|+..+-.+|+.+++.+++.+++..+.+.+.+.
T Consensus 418 ~lvRpSgTEP~irvy~Ea~~~~~~~~~~~~~~~~i~ 453 (455)
T 2f7l_A 418 FLVRKSGTEPIIRIMAEAKDENVANNLVNELKKIVE 453 (455)
T ss_dssp EEEEECSSSSEEEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred EEEeeCCCCcEEEEEEEECCHHHHHHHHHHHHHHHh
Confidence 345565444569999999999988888888887764
No 41
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=27.72 E-value=84 Score=18.35 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=18.1
Q ss_pred eEEEEEEecCHHHHHHHHHHHHHHcc
Q 031793 120 PLIISFEGKDQARIEAAIESLFKKFH 145 (153)
Q Consensus 120 ~v~l~~~g~~~~~~~~~~~~l~~~l~ 145 (153)
+|||++.+....+.++..+.+.+-|.
T Consensus 3 rvrisitartkkeaekfaailikvfa 28 (62)
T 2gjh_A 3 RVRISITARTKKEAEKFAAILIKVFA 28 (62)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEecchhHHHHHHHHHHHHHH
Confidence 57888888777777777666665443
No 42
>2dwf_A Pulmonary surfactant-associated protein B; mini-B, SP-B, surfactant protein B, lipid associated protein, surface active protein; NMR {Synthetic} SCOP: j.35.1.1 PDB: 2jou_A
Probab=26.75 E-value=11 Score=20.08 Aligned_cols=14 Identities=29% Similarity=0.532 Sum_probs=11.0
Q ss_pred ccceeccCCCceeee
Q 031793 19 FQMALLPEGTTELLH 33 (153)
Q Consensus 19 ~rqA~vP~ga~~il~ 33 (153)
+-||++|+|. +++|
T Consensus 10 riq~vIPk~~-r~lP 23 (34)
T 2dwf_A 10 RIQAMIPKGG-RMLP 23 (34)
T ss_dssp HHHHHCTTCC-SCCS
T ss_pred HHHhhcCCcc-cchH
Confidence 3479999998 8775
No 43
>3ccd_A Phosphocarrier protein HPR; succinimide, isoaspartate, protein damage, autophosphatase, transferase; 1.00A {Escherichia coli} PDB: 1cm3_A 1cm2_A 1ggr_B 1hdn_A 1j6t_B 1pfh_A* 1poh_A 1vrc_C 2jel_P 2xdf_C 3eza_B 3ezb_B 3eze_B 1opd_A
Probab=26.52 E-value=78 Score=19.90 Aligned_cols=14 Identities=36% Similarity=0.544 Sum_probs=11.2
Q ss_pred eEEEEEEecCHHHH
Q 031793 120 PLIISFEGKDQARI 133 (153)
Q Consensus 120 ~v~l~~~g~~~~~~ 133 (153)
.+.|+++|+|++++
T Consensus 60 ~i~i~~~G~De~~A 73 (85)
T 3ccd_A 60 VVTISAEGEDEQKA 73 (85)
T ss_dssp EEEEEEESTTHHHH
T ss_pred EEEEEEeCCCHHHH
Confidence 58999999997643
No 44
>1sph_A Histidine-containing phosphocarrier protein HPR; phosphotransferase; 2.00A {Bacillus subtilis} SCOP: d.94.1.1 PDB: 1jem_A* 2hid_A 2hpr_A
Probab=25.01 E-value=1.2e+02 Score=19.13 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=11.6
Q ss_pred eeEEEEEEecCHHHH
Q 031793 119 GPLIISFEGKDQARI 133 (153)
Q Consensus 119 ~~v~l~~~g~~~~~~ 133 (153)
..++|+++|+|++.+
T Consensus 59 ~~i~i~~~G~De~~A 73 (88)
T 1sph_A 59 AEITISASGADENDA 73 (88)
T ss_dssp CEEEEEEESTTHHHH
T ss_pred CEEEEEEeCCCHHHH
Confidence 358999999997644
No 45
>3bn4_A Carbon dioxide-concentrating mechanism protein CC 1; hexamer, structural protein; 2.00A {Synechocystis SP}
Probab=24.78 E-value=1.6e+02 Score=20.17 Aligned_cols=39 Identities=13% Similarity=0.311 Sum_probs=27.1
Q ss_pred CCcEEEEccccCCeeEEEEEEecCHHHHHHHHHHHHHHcc
Q 031793 106 PDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFH 145 (153)
Q Consensus 106 ~~v~ig~yp~~~~~~v~l~~~g~~~~~~~~~~~~l~~~l~ 145 (153)
-+|++..|-....+.+.+.++|+ -+.+++|.+...+...
T Consensus 27 A~V~Lv~~~~~~~G~~~vii~GD-VsAV~aAv~ag~~~a~ 65 (122)
T 3bn4_A 27 ARVTLVGYEKIGSGRVTVIVRGD-VSEVQASVTAGIENIR 65 (122)
T ss_dssp SSCEEEEEEEEETTEEEEEEEEC-HHHHHHHHHHHHHHGG
T ss_pred CCcEEEEEEccCCcEEEEEEEEc-HHHHHHHHHHHHHHHh
Confidence 48999998877667888888885 4445666665555443
No 46
>2dka_A Phosphoacetylglucosamine mutase; isomerase; 1.93A {Candida albicans} PDB: 2dkc_A* 2dkd_A*
Probab=23.49 E-value=1.9e+02 Score=24.42 Aligned_cols=51 Identities=12% Similarity=0.161 Sum_probs=34.5
Q ss_pred hHHHHHHhhhhCCCcEEEEccccCCeeEEEEEEecCHHHHHHHHHHHHHHc
Q 031793 94 AAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKF 144 (153)
Q Consensus 94 l~~~L~~l~~~~~~v~ig~yp~~~~~~v~l~~~g~~~~~~~~~~~~l~~~l 144 (153)
+.+.+..+...+++=-+-..|+..+-.+|+.+++.+++.+++..+.+.+.+
T Consensus 493 ~~~~iDGv~~~~~~gw~lvRpSGTEP~lRvy~Ea~~~e~~~~l~~~~~~~v 543 (544)
T 2dka_A 493 MQDEIDKLVAQYPNGRSFVRASGTEDAVRVYAEADTQNNVEELSKAVSELV 543 (544)
T ss_dssp HHHHHHHHHTTSTTCEEEEEEC----CEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred hhcccceEEEEcCCEEEEEEcCCCCCEEEEEEEeCCHHHHHHHHHHHHHHh
Confidence 344555555555555666778655567999999999999888888877654
No 47
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=23.22 E-value=1.3e+02 Score=19.58 Aligned_cols=52 Identities=21% Similarity=0.236 Sum_probs=31.2
Q ss_pred ChhhhHHHHHHhhhhCCCcEEEEccc----cC---CeeEEEEEEecCHHHHHHHHHHHHHH
Q 031793 90 SDLEAAQPLSKLCLEFPDLHIGCYRK----SR---QGPLIISFEGKDQARIEAAIESLFKK 143 (153)
Q Consensus 90 ~ES~l~~~L~~l~~~~~~v~ig~yp~----~~---~~~v~l~~~g~~~~~~~~~~~~l~~~ 143 (153)
+++.-++.|+++..++ ++.+.++-. .. .+.+.+.+.|+ .+.++++.+.|++.
T Consensus 30 g~~~~~PiIs~l~~~~-~v~vnIL~g~I~~i~~~~~G~L~v~l~G~-~~~~~~ai~~L~~~ 88 (106)
T 3dhx_A 30 GQSVDAPLLSETARRF-NVNNNIISAQMDYAGGVKFGIMLTEMHGT-QQDTQAAIAWLQEH 88 (106)
T ss_dssp EECTTCCHHHHHHHHS-CCEEEEEEEEEEEETTEEEEEEEEEEESC-HHHHHHHHHHHHHT
T ss_pred CCccChhHHHHHHHHH-CCCEEEEEEEeEEECCeeEEEEEEEEeCC-HHHHHHHHHHHHHC
Confidence 4444556677777777 454444331 11 24577777774 55678888888764
No 48
>3j20_L 30S ribosomal protein S10P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.21 E-value=1.2e+02 Score=19.89 Aligned_cols=25 Identities=4% Similarity=0.053 Sum_probs=21.2
Q ss_pred eEEEEEEecCHHHHHHHHHHHHHHc
Q 031793 120 PLIISFEGKDQARIEAAIESLFKKF 144 (153)
Q Consensus 120 ~v~l~~~g~~~~~~~~~~~~l~~~l 144 (153)
.++|+++|.|...++.+++.+.+..
T Consensus 3 kirI~LkS~d~~~Ld~~~~~i~~~a 27 (102)
T 3j20_L 3 KARIKIASTNVRSLDEVANQIKQIA 27 (102)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEEEEEECCHHHHHHHHHHHHHHH
Confidence 4899999999999999888887654
No 49
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=23.20 E-value=1.7e+02 Score=23.27 Aligned_cols=55 Identities=18% Similarity=0.243 Sum_probs=34.3
Q ss_pred CCChhhhHHHHHHhhhhCCCc-EEEEccccCCeeEEEEEEecCHHHHHHHHHHHHHH
Q 031793 88 NLSDLEAAQPLSKLCLEFPDL-HIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKK 143 (153)
Q Consensus 88 g~~ES~l~~~L~~l~~~~~~v-~ig~yp~~~~~~v~l~~~g~~~~~~~~~~~~l~~~ 143 (153)
.+.+..+.+.|.+|......+ -+|+||......... ..+......+++.+++...
T Consensus 254 ~~~d~~v~~aL~~L~~~~~~~kiLGsYp~~~~~~~~~-~~~~~~~~~~~~~~w~~~~ 309 (313)
T 3mwb_A 254 HATDSRVADALAGLHRISPATRFLGSYARADKQPAVV-APHTSDAAFASAHAWVDSI 309 (313)
T ss_dssp CTTSHHHHHHHHHHHHHCTTCEEEEEEECTTCCCCCC-CTTCSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCcEEEEeeeecCccCCccc-CCCCCCcchhHHHHHHHHh
Confidence 467778999999997766555 489999754332211 1122345556666666554
No 50
>3pdk_A Phosphoglucosamine mutase; 4-domain architecture, mixed A/B fold, phosphohexomutase; 2.70A {Bacillus anthracis}
Probab=23.00 E-value=2.6e+02 Score=23.12 Aligned_cols=51 Identities=12% Similarity=0.050 Sum_probs=32.4
Q ss_pred HHHHHHhhhhC-CCcEEEEccccCCeeEEEEEEecCHHHHHHHHHHHHHHcc
Q 031793 95 AQPLSKLCLEF-PDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFH 145 (153)
Q Consensus 95 ~~~L~~l~~~~-~~v~ig~yp~~~~~~v~l~~~g~~~~~~~~~~~~l~~~l~ 145 (153)
.+.+..+...+ ++=-+=..|+..+--+|+.+++.+++.+++..+.+.+.+.
T Consensus 412 ~~~i~~~~~~~~~~gw~lvRpSgTEP~lRv~~Ea~~~~~~~~l~~~~~~~i~ 463 (469)
T 3pdk_A 412 KEIIRVVEEEMNGDGRILVRPSGTEPLIRVMAEAPTQEVCDAYVHRIVEVVK 463 (469)
T ss_dssp HHHHHHHHHHCCSSCEEEEECCSSSCCEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHheEeCCCcEEEEEeCCCCCEEEEEEEECCHHHHHHHHHHHHHHHH
Confidence 34444443333 3333455665545569999999999988777777666553
No 51
>4axj_A EUTM, ethanolamine carboxysome structural protein; bacterial microcompartment; 1.62A {Clostridium difficile}
Probab=22.94 E-value=1.5e+02 Score=19.75 Aligned_cols=33 Identities=12% Similarity=0.243 Sum_probs=21.9
Q ss_pred CCcEEEEccccCCeeEEEEEEecCHHHHHHHHHH
Q 031793 106 PDLHIGCYRKSRQGPLIISFEGKDQARIEAAIES 139 (153)
Q Consensus 106 ~~v~ig~yp~~~~~~v~l~~~g~~~~~~~~~~~~ 139 (153)
-+|++..|-+.+.+.+.+.++|+- +.+++|.+.
T Consensus 30 A~V~lv~~~~~~~G~~~v~i~GDV-saV~aAv~a 62 (104)
T 4axj_A 30 ANVQLVGKEQVGGGLVTVMVRGDV-GAVKAATDA 62 (104)
T ss_dssp SSCEEEEEEECSTTEEEEEEEECH-HHHHHHHHH
T ss_pred CCcEEEEEEecCCeEEEEEEEEcH-HHHHHHHHH
Confidence 489999997666677778888853 333444433
No 52
>1ptf_A Histidine-containing phosphocarrier protein HPR; phosphotransferase; 1.60A {Enterococcus faecalis} SCOP: d.94.1.1 PDB: 1qfr_A 1fu0_A*
Probab=22.79 E-value=1.3e+02 Score=18.90 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=11.6
Q ss_pred eeEEEEEEecCHHHH
Q 031793 119 GPLIISFEGKDQARI 133 (153)
Q Consensus 119 ~~v~l~~~g~~~~~~ 133 (153)
..+.|+++|+|++.+
T Consensus 59 ~~i~i~~~G~De~~A 73 (88)
T 1ptf_A 59 SDVTITVDGADEAEG 73 (88)
T ss_dssp CEEEEEEESTTHHHH
T ss_pred CEEEEEEeCCCHHHH
Confidence 358899999997644
No 53
>2h9z_A Hypothetical protein HP0495; feredoxin-like (beta-alpha-beta-BETA-alpha-beta), structural genomics, unknown function; NMR {Helicobacter pylori} SCOP: d.58.54.2 PDB: 2joq_A
Probab=22.63 E-value=60 Score=20.69 Aligned_cols=56 Identities=5% Similarity=0.009 Sum_probs=34.1
Q ss_pred EE-eCCChhh-hHHHHHHhhhhCCCcEEE-EccccCC--eeEEEEEEecCHHHHHHHHHHHHH
Q 031793 85 LT-TNLSDLE-AAQPLSKLCLEFPDLHIG-CYRKSRQ--GPLIISFEGKDQARIEAAIESLFK 142 (153)
Q Consensus 85 l~-~g~~ES~-l~~~L~~l~~~~~~v~ig-~yp~~~~--~~v~l~~~g~~~~~~~~~~~~l~~ 142 (153)
++ .|..+.+ +.+.+.++..++ ..+- +.++..+ ..+.+++...+.+.++++.++|.+
T Consensus 18 ~Kvig~~~~~~~~~~V~~v~~~~--~~~~~~r~Ss~GkY~Svtv~i~a~s~eq~~~iY~~L~~ 78 (86)
T 2h9z_A 18 YRVIMTTKDTSTLKELLETYQRP--FKLEFKNTSKNAKFYSFNVSMEVSNESERNEIFQKISQ 78 (86)
T ss_dssp EEEEECCSCTHHHHHHSTTCCSS--EECCBSCSSCCSSCEEEEEEEECCSHHHHHHHHHHHTC
T ss_pred EEEEEECCcHHHHHHHHHHHhcc--CCCcccccCCCCeEEEEEEEEEECCHHHHHHHHHHHhc
Confidence 44 5666665 666666664332 1211 2343322 248888888899988888887764
No 54
>3n79_A PDUT; FES cluster, BMC shell protein, carboxysome, electron T; 1.50A {Salmonella enterica subsp} PDB: 3vcd_A 4ddf_A 3pac_A
Probab=22.52 E-value=1.6e+02 Score=21.64 Aligned_cols=40 Identities=18% Similarity=0.278 Sum_probs=29.9
Q ss_pred CCcEEEEccccCCeeEEEEEEecCHHHHHHHHHHHHHHccc
Q 031793 106 PDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHR 146 (153)
Q Consensus 106 ~~v~ig~yp~~~~~~v~l~~~g~~~~~~~~~~~~l~~~l~~ 146 (153)
-+|++..+-+...+++.+.+.| |.+.++.+.+...+..+.
T Consensus 27 a~V~l~~~~~~~~G~~~~ii~G-dv~aV~~Av~a~~~~~~~ 66 (192)
T 3n79_A 27 ANVDLLVSKTISPGKFLLMLGG-DIGAIQQAIETGTSQAGE 66 (192)
T ss_dssp SSCEEEEEEEETTTEEEEEEEE-CHHHHHHHHHHHHHHHGG
T ss_pred CCcEEEEEEeecCceEEEEEEc-cHHHHHHHHHHHHHHhhc
Confidence 4899988887766778888888 777777777766665554
No 55
>1ka5_A Phosphocarrier protein HPR; open faced beta-sandwich, structural proteomics in europe, spine, structural genomics, ligand transport; NMR {Staphylococcus aureus} SCOP: d.94.1.1 PDB: 1qr5_A 1txe_A
Probab=22.12 E-value=1.2e+02 Score=19.13 Aligned_cols=15 Identities=20% Similarity=0.397 Sum_probs=11.6
Q ss_pred eeEEEEEEecCHHHH
Q 031793 119 GPLIISFEGKDQARI 133 (153)
Q Consensus 119 ~~v~l~~~g~~~~~~ 133 (153)
..+.|+++|+|++++
T Consensus 59 ~~i~i~a~G~De~~A 73 (88)
T 1ka5_A 59 AEITIYADGSDESDA 73 (88)
T ss_dssp CEEEEEEESSSHHHH
T ss_pred CEEEEEEeCCCHHHH
Confidence 358999999997654
No 56
>3nwg_A Microcompartments protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.70A {Desulfitobacterium hafniense}
Probab=22.02 E-value=1.7e+02 Score=21.20 Aligned_cols=41 Identities=12% Similarity=0.131 Sum_probs=29.1
Q ss_pred CCcEEEEccccCCeeEEEEEEecCHHHHHHHHHHHHHHcccC
Q 031793 106 PDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHRG 147 (153)
Q Consensus 106 ~~v~ig~yp~~~~~~v~l~~~g~~~~~~~~~~~~l~~~l~~~ 147 (153)
-+|++..+-+...+++.+.+.| |.+.++++.+...+..+..
T Consensus 27 a~V~l~~~~~~~~G~~~vii~G-dv~aV~~Av~a~~~~~~~~ 67 (182)
T 3nwg_A 27 AQVDLLEAKPVCPGKYIVLICG-DVAAVQSSVTAGKTMAAHS 67 (182)
T ss_dssp SSEEEEEEEECSTTCEEEEEEE-CHHHHHHHHHHHHHHHGGG
T ss_pred CCeEEEEEEeccCcEEEEEEEe-cHHHHHHHHHHHHHhccCe
Confidence 4899988876655777777888 6667777776666655443
No 57
>1pch_A Phosphocarrier protein; phosphotransferase; 1.80A {Mycoplasma capricolum} SCOP: d.94.1.1
Probab=21.52 E-value=1.3e+02 Score=19.11 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=12.8
Q ss_pred eeEEEEEEecCHHHHHHH
Q 031793 119 GPLIISFEGKDQARIEAA 136 (153)
Q Consensus 119 ~~v~l~~~g~~~~~~~~~ 136 (153)
..++|+++|+|++++-++
T Consensus 58 ~~i~i~a~G~De~~Al~~ 75 (88)
T 1pch_A 58 TEITIQADGNDADQAIQA 75 (88)
T ss_dssp CEEEEEEESTTHHHHHHH
T ss_pred CEEEEEEeCCCHHHHHHH
Confidence 358999999997644333
No 58
>3ngk_A Propanediol utilization protein PDUA; BMC shell protein, carboxysome, unknown FU; 2.26A {Salmonella enterica subsp}
Probab=21.07 E-value=1.7e+02 Score=19.36 Aligned_cols=32 Identities=19% Similarity=0.334 Sum_probs=21.6
Q ss_pred CCcEEEEccccCCeeEEEEEEecCHHHHHHHHH
Q 031793 106 PDLHIGCYRKSRQGPLIISFEGKDQARIEAAIE 138 (153)
Q Consensus 106 ~~v~ig~yp~~~~~~v~l~~~g~~~~~~~~~~~ 138 (153)
-+|++..|-+.+.+.+.+.++|+- +.++++.+
T Consensus 36 A~V~lv~~~~~~~G~~~v~v~GDV-saV~aAv~ 67 (102)
T 3ngk_A 36 ANVMLVGYEKIGSGLVTVIVRGDV-GAVKAATD 67 (102)
T ss_dssp SSCEEEEEEECSTTEEEEEEEECH-HHHHHHHH
T ss_pred CCcEEEEEEecCCcEEEEEEEEeH-HHHHHHHH
Confidence 489999997666677888888853 33344433
No 59
>1wvq_A Hypothetical protein PAE2307; phosphorylated histidine, structural genomics, unknown funct; HET: NEP; 1.45A {Pyrobaculum aerophilum} PDB: 2gl0_A* 2jb7_A*
Probab=20.74 E-value=2.4e+02 Score=20.34 Aligned_cols=58 Identities=17% Similarity=0.155 Sum_probs=36.0
Q ss_pred hHHHHHHhhhhCCCcEEEEccccCCeeEEEEEEecCHHHHHHHHHHHHHHcccCceee
Q 031793 94 AAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHRGAFSE 151 (153)
Q Consensus 94 l~~~L~~l~~~~~~v~ig~yp~~~~~~v~l~~~g~~~~~~~~~~~~l~~~l~~~i~~~ 151 (153)
+++.-+.+....|++++|.--.-..++--++.+|.|++..+.|.+-..+.--.+.|..
T Consensus 32 VEDl~Ealv~svP~ikFGiAFcEASG~~LvR~~GnD~eL~~lA~~na~~IgAGH~Fvi 89 (167)
T 1wvq_A 32 VEDLYEALVTSVPGVKFGIAFCEASGKRLVRHEANDEELRNLAIDLCKKIAAGHVFVI 89 (167)
T ss_dssp HHHHHHHHHTTCTTCEEEEEEECCSTTCEEEEEESCHHHHHHHHHHHHHHCCTTEEEE
T ss_pred HHHHHHHHhhcCCCCeEEEEEeccCCceEEEecCCcHHHHHHHHHHHHHhcCCcEEEE
Confidence 3444444455568888776554334444477789999888777776666555555543
No 60
>1rlh_A Conserved hypothetical protein; structural genomics, T. acidophilum, PSI, protein structure initiative; 1.80A {Thermoplasma acidophilum} SCOP: d.256.1.1
Probab=20.41 E-value=2.5e+02 Score=20.35 Aligned_cols=57 Identities=18% Similarity=0.250 Sum_probs=35.5
Q ss_pred hHHHHHHhhhhCCCcEEEEccccCCeeEEEEEEecCHHHHHHHHHHHHHHcccCcee
Q 031793 94 AAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHRGAFS 150 (153)
Q Consensus 94 l~~~L~~l~~~~~~v~ig~yp~~~~~~v~l~~~g~~~~~~~~~~~~l~~~l~~~i~~ 150 (153)
+++.-+.+....|++++|.--.-..++--++.+|.|++..+.|.+-..+.=-.+.|.
T Consensus 40 VEDl~Ealv~svP~ikFGiAFcEASG~~LvR~~GnD~eL~~lA~~na~~IgAGH~Fv 96 (173)
T 1rlh_A 40 VEDLNEIIRTHVPGSKYGIGFSEASGDRLIRYDGNDDDLVKACIENIRRISAGHTFV 96 (173)
T ss_dssp THHHHHHTGGGSTTSEEEEEEECCSTTCCEEEEESCHHHHHHHHHHHHHHCCTTEEE
T ss_pred HHHHHHHHhhcCCCCeEEEEEeccCCceEEEecCCcHHHHHHHHHHHHHhcCCcEEE
Confidence 344445556666888877654323344346778889988777776666554445544
Done!