Query 031794
Match_columns 153
No_of_seqs 213 out of 1149
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 08:19:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031794.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031794hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_X 60S ribosomal protein L 100.0 2.8E-69 9.5E-74 422.7 10.5 151 1-153 1-152 (152)
2 3u5e_X 60S ribosomal protein L 100.0 3.1E-67 1.1E-71 407.4 13.0 139 14-153 4-142 (142)
3 4a17_R RPL23A, 60S ribosomal p 100.0 5E-66 1.7E-70 403.5 10.9 142 10-153 6-150 (150)
4 2zkr_s 60S ribosomal protein L 100.0 1.1E-65 3.8E-70 403.8 8.7 152 1-153 1-156 (156)
5 3bbo_V Ribosomal protein L23; 100.0 3.6E-47 1.2E-51 306.4 3.0 111 37-153 84-194 (198)
6 3j21_T 50S ribosomal protein L 100.0 9.7E-43 3.3E-47 250.3 9.9 86 68-153 1-86 (86)
7 1vq8_S 50S ribosomal protein L 100.0 1.6E-39 5.6E-44 233.0 8.8 84 70-153 2-85 (85)
8 3tve_T 50S ribosomal protein L 100.0 4.9E-33 1.7E-37 201.9 6.9 78 69-148 1-91 (92)
9 2zjr_Q 50S ribosomal protein L 100.0 1.3E-32 4.3E-37 200.7 6.0 81 68-150 1-94 (95)
10 3r8s_T 50S ribosomal protein L 100.0 5.5E-32 1.9E-36 196.7 7.4 76 67-142 4-92 (93)
11 1owx_A Lupus LA protein, SS-B, 81.1 1.8 6.3E-05 31.7 4.2 55 91-150 18-76 (121)
12 2dhg_A TRNA selenocysteine ass 78.9 8.4 0.00029 25.4 6.7 55 92-147 12-68 (104)
13 3md3_A Nuclear and cytoplasmic 71.1 13 0.00044 25.7 6.3 53 93-147 4-58 (166)
14 2ywk_A Putative RNA-binding pr 68.7 19 0.00064 23.1 6.3 53 93-147 20-74 (95)
15 2do4_A Squamous cell carcinoma 67.5 14 0.00047 24.2 5.5 54 92-147 20-75 (100)
16 2do0_A HnRNP M, heterogeneous 62.3 19 0.00065 23.9 5.6 55 92-148 18-74 (114)
17 2e44_A Insulin-like growth fac 61.1 30 0.001 22.2 6.5 54 91-147 17-71 (96)
18 2hvz_A Splicing factor, argini 58.8 21 0.00072 23.2 5.2 51 93-147 4-54 (101)
19 2d9o_A DNAJ (HSP40) homolog, s 57.7 19 0.00065 24.7 5.0 45 99-147 27-71 (100)
20 2lxi_A RNA-binding protein 10; 57.4 7.8 0.00027 25.5 2.8 52 94-146 6-60 (91)
21 3d2w_A TAR DNA-binding protein 57.4 12 0.0004 24.6 3.7 50 91-144 13-62 (89)
22 1whw_A Hypothetical protein ri 56.2 18 0.00063 23.4 4.5 51 95-147 14-67 (99)
23 2cq2_A Hypothetical protein LO 56.1 23 0.00078 25.2 5.3 47 97-148 35-81 (114)
24 3nmr_A Cugbp ELAV-like family 56.1 27 0.00091 24.3 5.7 55 91-147 97-153 (175)
25 2err_A Ataxin-2-binding protei 56.0 14 0.00049 24.9 4.1 51 96-148 36-87 (109)
26 2dnh_A Bruno-like 5, RNA bindi 55.3 26 0.0009 22.9 5.3 49 97-147 23-73 (105)
27 4fxv_A ELAV-like protein 1; RN 54.9 32 0.0011 22.9 5.7 54 91-146 21-77 (99)
28 3s7r_A Heterogeneous nuclear r 54.4 37 0.0013 21.3 6.0 52 93-146 15-69 (87)
29 3mdf_A Peptidyl-prolyl CIS-tra 53.3 25 0.00085 21.9 4.7 53 93-147 11-66 (85)
30 3beg_B Splicing factor, argini 53.2 20 0.0007 24.4 4.5 53 90-148 17-69 (115)
31 2cqc_A Arginine/serine-rich sp 52.6 32 0.0011 21.8 5.2 54 92-147 18-74 (95)
32 4a8x_A RNA-binding protein wit 52.6 27 0.00093 21.8 4.8 55 92-148 7-65 (88)
33 2cph_A RNA binding motif prote 52.2 33 0.0011 22.4 5.3 56 93-150 19-78 (107)
34 3q2s_C Cleavage and polyadenyl 51.8 40 0.0014 26.1 6.5 55 92-147 71-129 (229)
35 1ywx_A 30S ribosomal protein S 50.7 65 0.0022 22.9 7.0 68 79-150 6-80 (102)
36 1s79_A Lupus LA protein; RRM, 50.4 27 0.00093 23.6 4.8 53 91-145 13-67 (103)
37 2g1d_A 30S ribosomal protein S 50.3 34 0.0012 24.2 5.4 66 81-150 8-81 (98)
38 1x4a_A Splicing factor, argini 49.4 25 0.00086 23.3 4.4 52 94-147 27-78 (109)
39 1p27_B RNA-binding protein 8A; 49.0 46 0.0016 21.7 5.6 53 93-147 27-82 (106)
40 4f25_A Polyadenylate-binding p 48.2 32 0.0011 23.3 4.9 54 91-146 7-61 (115)
41 2fy1_A RNA-binding motif prote 48.0 28 0.00095 23.8 4.5 52 94-147 12-65 (116)
42 2dgw_A Probable RNA-binding pr 47.7 33 0.0011 21.8 4.7 48 94-144 15-64 (91)
43 1x4g_A Nucleolysin TIAR; struc 47.5 40 0.0014 22.3 5.2 49 94-147 30-78 (109)
44 1wez_A HnRNP H', FTP-3, hetero 47.4 14 0.00048 24.9 2.8 49 94-145 20-70 (102)
45 3ulh_A THO complex subunit 4; 47.0 49 0.0017 21.6 5.6 55 91-147 29-87 (107)
46 2dnn_A RNA-binding protein 12; 46.6 13 0.00044 25.8 2.6 48 95-145 22-71 (109)
47 2cq3_A RNA-binding protein 9; 46.3 31 0.001 22.5 4.4 50 96-147 22-72 (103)
48 3s8s_A Histone-lysine N-methyl 45.9 43 0.0015 22.8 5.3 54 91-146 8-64 (110)
49 1x5s_A Cold-inducible RNA-bind 45.9 40 0.0014 21.8 4.9 52 94-147 17-71 (102)
50 1x4c_A Splicing factor, argini 45.7 31 0.0011 22.9 4.5 50 92-147 18-67 (108)
51 3ex7_B RNA-binding protein 8A; 45.6 32 0.0011 23.3 4.6 53 93-147 26-81 (126)
52 1wi8_A EIF-4B, eukaryotic tran 45.2 17 0.00059 23.9 3.0 47 97-146 23-73 (104)
53 2jvr_A Nucleolar protein 3; RN 45.2 31 0.0011 24.0 4.5 52 92-146 31-83 (111)
54 2dha_A FLJ20171 protein; RRM d 45.0 21 0.00071 25.3 3.6 55 91-145 23-83 (123)
55 2cq4_A RNA binding motif prote 44.9 43 0.0015 22.2 5.1 54 92-147 28-84 (114)
56 2v94_A RPS24, 30S ribosomal pr 44.7 56 0.0019 23.5 5.8 64 83-150 18-89 (107)
57 2dnm_A SRP46 splicing factor; 44.7 48 0.0017 21.5 5.2 53 94-148 18-73 (103)
58 2kt5_A RNA and export factor-b 44.1 33 0.0011 23.3 4.4 53 92-146 36-92 (124)
59 3a9j_A Ubiquitin; protein comp 43.9 39 0.0013 20.6 4.4 36 90-125 10-45 (76)
60 2xs2_A Deleted in azoospermia- 43.6 64 0.0022 20.8 6.3 51 94-146 14-66 (102)
61 2dis_A Unnamed protein product 43.3 35 0.0012 22.4 4.3 50 96-148 15-70 (109)
62 2d9p_A Polyadenylate-binding p 43.2 41 0.0014 21.9 4.7 53 92-147 18-72 (103)
63 2f3j_A RNA and export factor b 43.2 32 0.0011 25.6 4.5 55 91-147 88-146 (177)
64 2dnz_A Probable RNA-binding pr 42.4 44 0.0015 21.2 4.6 51 95-147 11-64 (95)
65 1u6f_A Tcubp1, RNA-binding pro 42.2 51 0.0017 22.6 5.3 52 95-148 48-102 (139)
66 1xn9_A 30S ribosomal protein S 42.1 89 0.0031 22.1 7.0 66 81-150 8-80 (101)
67 2hgm_A HNRPF protein, heteroge 42.0 23 0.00078 25.4 3.4 54 92-146 43-100 (126)
68 2rs2_A Musashi-1, RNA-binding 42.0 33 0.0011 23.1 4.1 54 92-147 28-84 (109)
69 3k9o_B Ubiquitin, UBB+1; E2-25 41.8 41 0.0014 22.0 4.5 36 90-125 11-46 (96)
70 2xzm_P RPS24E; ribosome, trans 41.5 1E+02 0.0035 23.5 7.2 61 86-150 15-83 (149)
71 3phx_B Ubiquitin-like protein 41.2 51 0.0018 20.6 4.8 35 90-124 14-48 (79)
72 1ndd_A NEDD8, protein (ubiquit 40.9 46 0.0016 20.2 4.4 36 90-125 10-45 (76)
73 2adc_A Polypyrimidine tract-bi 40.1 42 0.0014 25.2 4.9 52 94-148 156-207 (229)
74 2cqg_A TDP-43, TAR DNA-binding 40.0 74 0.0025 20.5 5.8 52 93-146 19-73 (103)
75 2j8a_A Histone-lysine N-methyl 39.2 95 0.0033 23.3 6.6 46 91-138 4-56 (136)
76 2i2y_A Fusion protein consists 39.1 38 0.0013 23.7 4.2 49 94-146 78-126 (150)
77 1x5o_A RNA binding motif, sing 39.1 40 0.0014 22.3 4.2 52 93-146 29-82 (114)
78 3n3k_B Ubiquitin; hydrolase, p 38.5 44 0.0015 21.0 4.1 36 90-125 13-48 (85)
79 2dgt_A RNA-binding protein 30; 38.5 49 0.0017 21.1 4.4 44 97-147 18-61 (92)
80 2lkz_A RNA-binding protein 5; 38.4 27 0.00094 23.4 3.2 56 92-147 12-70 (95)
81 2dh8_A DAZ-associated protein 38.2 80 0.0027 20.4 6.3 48 97-146 24-74 (105)
82 1fxl_A Paraneoplastic encephal 37.8 78 0.0027 21.5 5.6 53 93-147 6-61 (167)
83 2g4b_A Splicing factor U2AF 65 37.8 98 0.0033 21.3 7.5 57 91-149 96-155 (172)
84 2dgv_A HnRNP M, heterogeneous 37.8 75 0.0026 19.9 5.3 49 97-147 16-65 (92)
85 4dwf_A HLA-B-associated transc 37.7 66 0.0023 20.7 5.0 36 90-125 15-50 (90)
86 2dng_A Eukaryotic translation 37.6 35 0.0012 22.3 3.6 46 97-145 23-71 (103)
87 3md1_A Nuclear and cytoplasmic 37.3 71 0.0024 19.6 5.1 54 93-148 5-61 (83)
88 2yh0_A Splicing factor U2AF 65 36.5 1.1E+02 0.0038 21.5 7.0 52 95-148 120-174 (198)
89 2hzc_A Splicing factor U2AF 65 36.4 76 0.0026 19.6 5.1 50 93-145 10-68 (87)
90 3mtn_B UBA80, ubcep1, ubiquiti 36.1 59 0.002 20.3 4.4 35 90-124 13-47 (85)
91 2dgp_A Bruno-like 4, RNA bindi 35.6 56 0.0019 21.2 4.4 50 96-147 20-72 (106)
92 2cqi_A Nucleolysin TIAR; RNA r 35.4 89 0.003 20.1 5.4 54 91-146 15-71 (103)
93 1qm9_A Polypyrimidine tract-bi 35.3 44 0.0015 24.0 4.1 51 95-148 126-176 (198)
94 2voo_A Lupus LA protein; RNA-b 34.7 79 0.0027 23.6 5.6 54 92-147 112-167 (193)
95 1x5u_A Splicing factor 3B subu 34.6 59 0.002 21.0 4.4 53 94-148 20-75 (105)
96 4eew_A Large proline-rich prot 34.5 78 0.0027 20.2 4.9 35 90-124 27-61 (88)
97 3dbh_I NEDD8; cell cycle, acti 34.5 56 0.0019 20.7 4.2 35 90-124 22-56 (88)
98 1whx_A Hypothetical protein ri 34.4 59 0.002 21.9 4.5 47 95-146 16-62 (111)
99 4fbj_B NEDD8; effector-HOST ta 34.4 52 0.0018 21.5 4.0 36 90-125 10-45 (88)
100 2ghp_A U4/U6 snRNA-associated 34.3 45 0.0015 25.7 4.2 50 97-147 125-176 (292)
101 1wh3_A 59 kDa 2'-5'-oligoadeny 34.2 59 0.002 20.7 4.3 36 90-125 17-52 (87)
102 4hcn_B Polyubiquitin, ubiquiti 34.2 51 0.0017 22.0 4.0 36 90-125 32-67 (98)
103 3sde_A Paraspeckle component 1 34.0 62 0.0021 24.8 5.0 52 96-149 103-156 (261)
104 3v6c_B Ubiquitin; structural g 33.9 63 0.0022 21.0 4.4 36 90-125 27-62 (91)
105 2bwf_A Ubiquitin-like protein 33.4 73 0.0025 19.5 4.5 36 90-125 13-48 (77)
106 2cqd_A RNA-binding region cont 33.2 69 0.0024 21.3 4.6 52 93-146 21-75 (116)
107 1qm9_A Polypyrimidine tract-bi 32.8 61 0.0021 23.2 4.6 49 94-146 8-57 (198)
108 2adc_A Polypyrimidine tract-bi 32.8 76 0.0026 23.7 5.3 52 91-146 34-88 (229)
109 2yh0_A Splicing factor U2AF 65 32.7 1.1E+02 0.0039 21.5 6.0 52 92-146 7-67 (198)
110 2dzi_A Ubiquitin-like protein 32.2 68 0.0023 19.9 4.2 36 90-125 17-52 (81)
111 2jrs_A RNA-binding protein 39; 32.0 84 0.0029 21.0 4.9 52 94-147 31-85 (108)
112 1wf0_A TDP-43, TAR DNA-binding 31.6 22 0.00075 22.6 1.7 48 93-144 9-56 (88)
113 2qfj_A FBP-interacting repress 31.5 99 0.0034 22.1 5.5 55 92-148 128-185 (216)
114 2hgn_A Heterogeneous nuclear r 31.3 13 0.00045 27.0 0.6 47 96-145 53-101 (139)
115 1x5p_A Negative elongation fac 30.9 1E+02 0.0034 19.8 5.0 51 92-147 16-66 (97)
116 1sjq_A Polypyrimidine tract-bi 30.8 77 0.0026 22.0 4.6 52 92-148 19-70 (105)
117 2dgs_A DAZ-associated protein 30.0 63 0.0021 20.8 3.9 50 94-145 15-67 (99)
118 1p1t_A Cleavage stimulation fa 29.7 1.1E+02 0.0037 19.6 5.0 54 92-147 11-67 (104)
119 1yx5_B Ubiquitin; proteasome, 29.5 81 0.0028 20.8 4.4 36 90-125 10-45 (98)
120 1b7f_A Protein (SXL-lethal pro 29.3 93 0.0032 21.3 4.9 55 92-148 92-149 (168)
121 1why_A Hypothetical protein ri 29.1 99 0.0034 19.7 4.7 52 92-148 20-71 (97)
122 2x1f_A MRNA 3'-END-processing 29.1 1E+02 0.0034 19.6 4.8 50 96-147 9-61 (96)
123 2hgl_A HNRPF protein, heteroge 28.5 49 0.0017 23.8 3.3 52 92-144 45-102 (136)
124 1cqm_A Ribosomal protein S6; a 28.4 1.1E+02 0.0039 20.9 5.2 33 92-124 5-43 (101)
125 3p5t_L Cleavage and polyadenyl 28.1 1E+02 0.0035 19.5 4.6 52 93-145 5-60 (90)
126 2cqb_A Peptidyl-prolyl CIS-tra 28.0 68 0.0023 20.6 3.7 52 94-147 17-71 (102)
127 2jwn_A Embryonic polyadenylate 27.8 1.4E+02 0.0047 19.9 5.7 54 90-145 37-93 (124)
128 3vdz_A Ubiquitin-40S ribosomal 27.6 1E+02 0.0036 21.1 4.9 36 90-125 45-80 (111)
129 3zzp_A TS9, ribosomal protein 27.5 64 0.0022 21.5 3.6 23 92-114 47-69 (77)
130 2uyz_B Small ubiquitin-related 27.5 1.1E+02 0.0038 18.9 4.7 35 90-124 13-47 (79)
131 2cqh_A IGF-II mRNA-binding pro 27.5 64 0.0022 20.5 3.5 51 92-148 11-62 (93)
132 2ki2_A SS-DNA binding protein 27.3 1.2E+02 0.004 18.9 5.4 54 92-148 4-60 (90)
133 1sif_A Ubiquitin; hydrophobic 27.1 78 0.0027 20.6 3.9 36 90-125 19-54 (88)
134 2klc_A Ubiquilin-1; ubiquitin- 27.0 1.2E+02 0.0041 20.3 5.0 35 91-125 35-69 (101)
135 2dgx_A KIAA0430 protein; RRM d 26.7 88 0.003 20.1 4.1 49 96-146 16-68 (96)
136 1ufw_A Synaptojanin 2; RNP dom 26.6 76 0.0026 22.4 3.9 38 104-148 39-76 (95)
137 1wx8_A Riken cDNA 4931431F19; 26.0 99 0.0034 20.2 4.3 35 91-125 27-61 (96)
138 3lqv_A PRE-mRNA branch site pr 26.0 1E+02 0.0036 20.2 4.5 52 93-146 12-63 (115)
139 1wx7_A Ubiquilin 3; ubiquitin- 25.9 1.2E+02 0.0041 20.3 4.9 34 92-125 28-61 (106)
140 2kxn_B Transformer-2 protein h 25.9 75 0.0026 22.1 3.9 55 92-148 49-106 (129)
141 3hvm_A Agmatine deiminase; hyd 25.7 49 0.0017 28.0 3.3 20 98-117 165-184 (330)
142 3n9u_C Cleavage and polyadenyl 25.4 1.7E+02 0.0058 21.0 5.9 54 92-146 58-115 (156)
143 1wg1_A KIAA1579 protein, homol 25.1 33 0.0011 21.9 1.7 48 93-146 9-56 (88)
144 2cq1_A PTB-like protein L; RRM 25.1 72 0.0025 21.5 3.5 48 96-148 22-69 (101)
145 2l7r_A Ubiquitin-like protein 24.8 87 0.003 20.7 3.9 35 91-125 28-62 (93)
146 1l3k_A Heterogeneous nuclear r 24.7 1.2E+02 0.0042 21.3 4.9 54 92-147 107-163 (196)
147 2hj8_A Interferon-induced 17 k 24.7 1.2E+02 0.004 19.6 4.5 35 91-125 15-49 (88)
148 3pgw_S U1-70K; protein-RNA com 24.6 1.1E+02 0.0037 26.1 5.4 53 93-147 106-161 (437)
149 1wf1_A RNA-binding protein RAL 24.5 91 0.0031 20.5 4.0 45 97-148 35-80 (110)
150 2db1_A Heterogeneous nuclear r 24.4 56 0.0019 22.2 2.9 48 97-145 25-76 (118)
151 3h7c_X Agmatine deiminase; str 24.0 55 0.0019 28.3 3.3 20 98-117 187-206 (383)
152 3u5c_Y RP50, 40S ribosomal pro 24.0 2.3E+02 0.0078 21.2 7.1 62 85-150 16-85 (135)
153 3r27_A HnRNP L, heterogeneous 23.8 1.4E+02 0.0049 20.4 5.0 51 91-146 21-73 (100)
154 1yqb_A Ubiquilin 3; structural 23.7 1.4E+02 0.0048 20.0 4.9 34 92-125 33-66 (100)
155 1v5o_A 1700011N24RIK protein; 23.0 1.1E+02 0.0038 20.5 4.2 35 91-125 22-56 (102)
156 2e5h_A Zinc finger CCHC-type a 22.7 1.2E+02 0.0041 19.0 4.1 54 92-147 19-75 (94)
157 1x4h_A RNA-binding protein 28; 22.7 1.6E+02 0.0055 19.0 5.2 54 94-149 20-76 (111)
158 2khc_A Testis-specific RNP-typ 22.7 95 0.0033 20.5 3.8 51 96-148 47-100 (118)
159 2kk8_A Uncharacterized protein 22.4 1.6E+02 0.0054 19.1 4.8 36 90-125 20-55 (84)
160 1x4b_A Heterogeneous nuclear r 22.3 96 0.0033 20.5 3.7 51 92-144 30-83 (116)
161 2j76_E EIF-4B, EIF4B, eukaryot 22.2 24 0.00082 23.2 0.6 49 95-146 25-77 (100)
162 4f02_A Polyadenylate-binding p 22.1 1.3E+02 0.0044 22.2 4.8 54 91-146 105-159 (213)
163 1j8c_A Ubiquitin-like protein 22.0 1.6E+02 0.0055 20.7 5.1 35 91-125 42-76 (125)
164 2kd0_A LRR repeats and ubiquit 22.0 1E+02 0.0036 19.9 3.8 36 90-125 21-56 (85)
165 2m2b_A RNA-binding protein 10; 21.3 47 0.0016 22.9 2.0 56 92-148 26-84 (131)
166 2ghp_A U4/U6 snRNA-associated 21.3 2.3E+02 0.0079 21.5 6.2 54 91-146 43-97 (292)
167 2ojr_A Ubiquitin; lanthide-bin 21.1 1.5E+02 0.0051 20.1 4.6 36 90-125 45-80 (111)
168 3m62_B UV excision repair prot 20.9 76 0.0026 21.6 3.0 36 90-125 11-46 (106)
169 1wy8_A NP95-like ring finger p 20.4 1.5E+02 0.0053 18.7 4.4 35 91-125 19-54 (89)
170 1v86_A DNA segment, CHR 7, way 20.4 1.1E+02 0.0037 20.4 3.7 35 90-124 26-60 (95)
171 3ucg_A Polyadenylate-binding p 20.2 1.6E+02 0.0055 18.1 5.4 52 92-145 9-63 (89)
No 1
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=100.00 E-value=2.8e-69 Score=422.73 Aligned_cols=151 Identities=83% Similarity=1.159 Sum_probs=120.8
Q ss_pred CCCCCCCCCCCCchH-HHHHHHHhhhcCCCCcccceeecccccccCCCccCcCCCCCCCCcCCCCCCCCChhhhhhcccc
Q 031794 1 MAPKVDSSKKGDPKA-QATKVAKAVKSGPTFKKKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLT 79 (153)
Q Consensus 1 m~~k~~~~~~~~~k~-kalkakkavlkg~~~~~~~~k~~~~~~f~~pktl~~~r~pky~rk~~p~~~kld~~~IIk~Pl~ 79 (153)
|||+++. |++++++ |||+|+||||||+|||++ +++|+|++|+||+||+++|+|+|||+|+|+||+||+|+||++|++
T Consensus 1 m~~~~~~-~~a~aka~ka~kakkavlkg~~~~~~-~k~~~s~~f~~pktl~l~r~pkyp~ks~p~~~kmd~~~IIk~Pli 78 (152)
T 3iz5_X 1 MAPKAAV-KKADGKTQQALKVAKAVKSGSIKRKS-KKIRTSVTFHRPKTLKKARDPKYPRVSAPGRNKLDQYQILKYPLT 78 (152)
T ss_dssp -------------------------------CCC-HHHHHHHHHTCSSCCCCCCCCCCCCSSCCCCCCCCCCCSEEEECC
T ss_pred CCCCCCC-cccchhhHHHHHHHHHHhcccccccc-ccccCcccccCccccccccCCCCCcccCCCCCcCcHHHHHhhCCc
Confidence 8998654 9999999 999999999999999987 899999999999999999999999999999999999999999999
Q ss_pred chhhhhhhccCCeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHhhccC
Q 031794 80 TESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153 (153)
Q Consensus 80 TEkamk~~E~nNtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~KKAyV~L~~d~dAldvankigii 153 (153)
||+||+++|+||+|+|+||++|||+|||+|||+||||+|.+|||+|+|+|||||||+|++|||||||||+||||
T Consensus 79 TEKa~~~~E~~N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnkiGii 152 (152)
T 3iz5_X 79 TESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANKIGII 152 (152)
T ss_dssp SHHHHHHHHHHSEEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHGGGCCC
T ss_pred CHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997
No 2
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=100.00 E-value=3.1e-67 Score=407.40 Aligned_cols=139 Identities=58% Similarity=0.859 Sum_probs=119.8
Q ss_pred hHHHHHHHHhhhcCCCCcccceeecccccccCCCccCcCCCCCCCCcCCCCCCCCChhhhhhccccchhhhhhhccCCeE
Q 031794 14 KAQATKVAKAVKSGPTFKKKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTL 93 (153)
Q Consensus 14 k~kalkakkavlkg~~~~~~~~k~~~~~~f~~pktl~~~r~pky~rk~~p~~~kld~~~IIk~Pl~TEkamk~~E~nNtl 93 (153)
++|||+|+||||||+|||++ +++|+|++|+||+||+++|+|+|||+|+|+||+||+|+||++|++||+||+++|++|+|
T Consensus 4 ~~ka~kakkavlkg~~~~~~-~k~~~s~~f~~pktl~l~r~pkyp~ks~p~~~kld~~~IIk~PliTEKa~~~~E~~N~~ 82 (142)
T 3u5e_X 4 SAKATAAKKAVVKGTNGKKA-LKVRTSATFRLPKTLKLARAPKYASKAVPHYNRLDSYKVIEQPITSETAMKKVEDGNIL 82 (142)
T ss_dssp ------------------CC-CCCCSCSCCCCCCCCCCCCCCSSCSSSSCCCCTTCHHHHEEEECCCHHHHHHHHHHCEE
T ss_pred hhHHHHHHHHHhccCCcccc-cccccCccccCccccccccCCCCCcccCCCCCCCCHHHhhhcCCcCHHHHHHHHhCCEE
Confidence 67899999999999999987 89999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHhhccC
Q 031794 94 VFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153 (153)
Q Consensus 94 vF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~KKAyV~L~~d~dAldvankigii 153 (153)
+|+||++|||+|||+|||+||||+|.+|||+|+|+|||||||+|++|||||||||+||||
T Consensus 83 vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnkigii 142 (142)
T 3u5e_X 83 VFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIANRIGYI 142 (142)
T ss_dssp EEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHHHHHTCC
T ss_pred EEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHHHhhccC
Confidence 999999999999999999999999999999999999999999999999999999999997
No 3
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=100.00 E-value=5e-66 Score=403.48 Aligned_cols=142 Identities=46% Similarity=0.689 Sum_probs=117.3
Q ss_pred CCCchHHHHHHHHhhhcCCCCcccceeecccccccCCCccCcCCCCCCCCcCCCCCC---CCChhhhhhccccchhhhhh
Q 031794 10 KGDPKAQATKVAKAVKSGPTFKKKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRN---KLDHYQILKYPLTTESAMKK 86 (153)
Q Consensus 10 ~~~~k~kalkakkavlkg~~~~~~~~k~~~~~~f~~pktl~~~r~pky~rk~~p~~~---kld~~~IIk~Pl~TEkamk~ 86 (153)
+++|++|||+|+||||||+|+ ++ +++|+|++|+||+||+|+|+|+|||+|+|+|| +||+|+||++|++||+||++
T Consensus 6 ~~~ak~ka~kakkavlkg~~~-~~-~k~~~s~~f~~pktl~l~r~pkyp~ks~p~~~~~~kld~y~IIk~PliTEKa~~~ 83 (150)
T 4a17_R 6 KTQAVNKAKNTAKVAKKGSSI-TK-HKTYTGVRFFRPKTLQLAKAPKYSRTVRAHLKVSGHLDNHSVVKTPLTTEKAMKK 83 (150)
T ss_dssp --------------------------CCCSSSBCCCCCCCCCCCCCSSCSSHHHHTTCCCCCCHHHHEEEECCSHHHHHH
T ss_pred chhHHHHHHHHHHHHhccCCC-Cc-ceecCCccccCccccccccCCCCCCcccCCCCccccCCHHHhhhccccCHHHHHH
Confidence 567889999999999999984 44 89999999999999999999999999999999 99999999999999999999
Q ss_pred hccCCeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHhhccC
Q 031794 87 IEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153 (153)
Q Consensus 87 ~E~nNtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~KKAyV~L~~d~dAldvankigii 153 (153)
+|++|+|+|+||++|||+|||+|||+||||+|.+|||+|+|+|||||||+|++|||||||||+||||
T Consensus 84 ~E~~N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvAnkiGii 150 (150)
T 4a17_R 84 MEDENTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLANKIGLI 150 (150)
T ss_dssp HHHSSEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHHHHHTCC
T ss_pred HHhCCEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHHhhccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999997
No 4
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1.1e-65 Score=403.84 Aligned_cols=152 Identities=72% Similarity=1.039 Sum_probs=77.7
Q ss_pred CCCCCCC----CCCCCchHHHHHHHHhhhcCCCCcccceeecccccccCCCccCcCCCCCCCCcCCCCCCCCChhhhhhc
Q 031794 1 MAPKVDS----SKKGDPKAQATKVAKAVKSGPTFKKKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKY 76 (153)
Q Consensus 1 m~~k~~~----~~~~~~k~kalkakkavlkg~~~~~~~~k~~~~~~f~~pktl~~~r~pky~rk~~p~~~kld~~~IIk~ 76 (153)
|++++++ ||++++++||++|+|+||+|+|+|+. +++|+|++|+||+||+++|+|+|||+|+|+||+||+|+||++
T Consensus 1 m~~k~~k~~~~~p~~~~~~ka~kakk~v~kg~~~~~~-~k~~~s~~f~~pktl~l~r~pkyprks~p~~~kmd~~~iIk~ 79 (156)
T 2zkr_s 1 MAPKAKKEAPAPPKAEAKAKALKAKKAVLKGVHSHKK-KKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKF 79 (156)
T ss_dssp ----------------------------------------------------------------------------CEEE
T ss_pred CCCcccccCCCccchhHHHHHHHHHHHHHhccCCccc-eeeccccccCCCcccccccCCCCCcccCCCcccCCHHHhHhc
Confidence 8888876 77999999999999999999999986 899999999999999999999999999999999999999999
Q ss_pred cccchhhhhhhccCCeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHhhccC
Q 031794 77 PLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153 (153)
Q Consensus 77 Pl~TEkamk~~E~nNtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~KKAyV~L~~d~dAldvankigii 153 (153)
|++||+||+++|+||+|+|+||++|||+|||+|||+||||+|.+|||+|+++|||||||+|++||+|||+||+||||
T Consensus 80 PliTEKa~~~~E~~n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~~KKAiVtL~~g~~aid~~~kiGii 156 (156)
T 2zkr_s 80 PLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156 (156)
T ss_dssp ECCSHHHHHHHHHHCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSSCEEEEEEECTTSCHHHHHHHC---
T ss_pred ccccHHHHHHHHhCCcEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEECCCCcHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997
No 5
>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=3.6e-47 Score=306.39 Aligned_cols=111 Identities=50% Similarity=0.838 Sum_probs=84.3
Q ss_pred ecccccccCCCccCcCCCCCCCCcCCCCCCCCChhhhhhccccchhhhhhhccCCeEEEEEecCCCHHHHHHHHHHHhCC
Q 031794 37 MRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEI 116 (153)
Q Consensus 37 ~~~~~~f~~pktl~~~r~pky~rk~~p~~~kld~~~IIk~Pl~TEkamk~~E~nNtlvF~Vd~kAnK~qIKqAvekly~V 116 (153)
.++|++|+||+||+++|+|+|||+ +||+|+||++|++||+||+++|++|+|+|+||++|||+|||+|||++|||
T Consensus 84 ~~~s~~F~rPktl~l~r~pKyprk------kMd~ydIIk~PvITEKAmkliE~nNkyvF~Vd~kANK~QIKqAVEkLFdV 157 (198)
T 3bbo_V 84 TTEEAATSQPKTSKKAKKLKYPRR------ILDVYQILQSPIITEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGV 157 (198)
T ss_dssp --------------------------------CCCCCBCCCCCCHHHHHHHHTSCEECCEECTTCCHHHHHHTTTTTSCC
T ss_pred cccceeeCCCcccccccCCCCccc------cCCHhheeeccccCHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHhCC
Confidence 467999999999999999999998 89999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHhhccC
Q 031794 117 QTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153 (153)
Q Consensus 117 ~V~kVNTli~p~g~KKAyV~L~~d~dAldvankigii 153 (153)
+|.+|||+++++|||||||+|++||+|||+||+||||
T Consensus 158 KV~kVNTln~~gg~KKAyVtLaeG~~AID~anKIGii 194 (198)
T 3bbo_V 158 KVRKVNTLIRPDGTKKAYIMLNKEYNASELAKKIGIF 194 (198)
T ss_dssp CEEECCCEEETTTEEECCEEECTTTCTTTHHHHCCCC
T ss_pred ceeEEEeeEcCCCeEEEEEEeCCCCchHHHHHhcccc
Confidence 9999999999999999999999999999999999997
No 6
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=9.7e-43 Score=250.35 Aligned_cols=86 Identities=48% Similarity=0.836 Sum_probs=83.3
Q ss_pred CChhhhhhccccchhhhhhhccCCeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHH
Q 031794 68 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVA 147 (153)
Q Consensus 68 ld~~~IIk~Pl~TEkamk~~E~nNtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~KKAyV~L~~d~dAldva 147 (153)
||+|+||++|++||+||+++|++|+|+|+||++|||+|||+|||++|||+|.+|||+++|+|||||||+|++||+|+|||
T Consensus 1 md~~~iIk~P~iTEKa~~~~e~~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva 80 (86)
T 3j21_T 1 MDPYKVIIRPVVTEKAISLIEKENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVA 80 (86)
T ss_dssp --CCCCEEECCCSHHHHHHHHTSCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHH
T ss_pred CChHHhhhccccCHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccC
Q 031794 148 NKIGII 153 (153)
Q Consensus 148 nkigii 153 (153)
||||||
T Consensus 81 ~kigi~ 86 (86)
T 3j21_T 81 ARLGLF 86 (86)
T ss_dssp HHSSCC
T ss_pred HhhccC
Confidence 999997
No 7
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=100.00 E-value=1.6e-39 Score=233.03 Aligned_cols=84 Identities=43% Similarity=0.638 Sum_probs=80.0
Q ss_pred hhhhhhccccchhhhhhhccCCeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHh
Q 031794 70 HYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANK 149 (153)
Q Consensus 70 ~~~IIk~Pl~TEkamk~~E~nNtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~KKAyV~L~~d~dAldvank 149 (153)
||+||++|++||+||+++|++|+|+|+||++|||+|||+|||++|||+|.+|||+++|+|||||||+|++|++|||+||+
T Consensus 2 ~~~iIk~P~iTEKa~~~~e~~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~aid~~~k 81 (85)
T 1vq8_S 2 SWDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVASR 81 (85)
T ss_dssp CCCSEEEECCSHHHHHHHHHSCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHTT
T ss_pred CcceeeccccCHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCcHHHHHHh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccC
Q 031794 150 IGII 153 (153)
Q Consensus 150 igii 153 (153)
||||
T Consensus 82 ig~~ 85 (85)
T 1vq8_S 82 IGVF 85 (85)
T ss_dssp C---
T ss_pred hCCC
Confidence 9996
No 8
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=99.98 E-value=4.9e-33 Score=201.86 Aligned_cols=78 Identities=28% Similarity=0.464 Sum_probs=74.1
Q ss_pred ChhhhhhccccchhhhhhhccCCeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCC-------------CCeeEEEE
Q 031794 69 DHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRP-------------DGTKKAYV 135 (153)
Q Consensus 69 d~~~IIk~Pl~TEkamk~~E~nNtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p-------------~g~KKAyV 135 (153)
|+|+||++|++||+||.++|+ |+|+|+||++|||+|||+|||++|||+|.+|||+++| +|||||||
T Consensus 1 ~~~~iI~~P~iTEKa~~~~e~-n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK~kR~g~~~G~~~~~KKA~V 79 (92)
T 3tve_T 1 TAYDVILAPVLSEKAYAGFAE-GKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKRLGRYLGKRPDRKKAIV 79 (92)
T ss_dssp CHHHHEEEECCSHHHHTTTTT-TEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCCEEESSSCEEECCCEEEEEE
T ss_pred ChhheecccccCHHHHHHhhC-CEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCceeeeccccccCCCceEEEE
Confidence 799999999999999999998 9999999999999999999999999999999999999 59999999
Q ss_pred EcCCCCcHHHHHH
Q 031794 136 RLTPDYDALDVAN 148 (153)
Q Consensus 136 ~L~~d~dAldvan 148 (153)
+|++| ++||+..
T Consensus 80 tL~~g-~~Id~f~ 91 (92)
T 3tve_T 80 QVAPG-QKIEALE 91 (92)
T ss_dssp EECTT-CCCTTTC
T ss_pred EcCCC-CcccCCC
Confidence 99999 5688753
No 9
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=99.97 E-value=1.3e-32 Score=200.72 Aligned_cols=81 Identities=30% Similarity=0.486 Sum_probs=75.8
Q ss_pred CChhhhhhccccchhhhhhhccCCeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCC-------------CeeEEE
Q 031794 68 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPD-------------GTKKAY 134 (153)
Q Consensus 68 ld~~~IIk~Pl~TEkamk~~E~nNtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~-------------g~KKAy 134 (153)
||+|+||++|++||+||.++|+|+ |+|+||++|||+|||+|||++|||+|.+|||+++|+ +|||||
T Consensus 1 m~~~~iI~~PviTEKs~~~~e~n~-y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~gK~kR~g~~~G~~~~~KKAi 79 (95)
T 2zjr_Q 1 MSHYDILQAPVISEKAYSAMERGV-YSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGKRKRVGRFIGQRNDRKKAI 79 (95)
T ss_dssp -CCSSSCCEECCTHHHHHHHTTTC-CEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCCCCSSSSCCCCCCCBEEEE
T ss_pred CChHhceeccccCHHHHHHHHCCE-EEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCCccceeccccccCCCcEEEE
Confidence 689999999999999999999855 999999999999999999999999999999999996 799999
Q ss_pred EEcCCCCcHHHHHHhh
Q 031794 135 VRLTPDYDALDVANKI 150 (153)
Q Consensus 135 V~L~~d~dAldvanki 150 (153)
|+|++|++ ||+++.+
T Consensus 80 VtL~~g~~-id~~~~~ 94 (95)
T 2zjr_Q 80 VRLAEGQS-IEALAGQ 94 (95)
T ss_dssp EECCSSCC-CSSTTTC
T ss_pred EEeCCCCe-eecccCC
Confidence 99999999 9998743
No 10
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=99.97 E-value=5.5e-32 Score=196.69 Aligned_cols=76 Identities=36% Similarity=0.493 Sum_probs=72.9
Q ss_pred CCChhhhhhccccchhhhhhhccCCeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCC-------------CCeeEE
Q 031794 67 KLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRP-------------DGTKKA 133 (153)
Q Consensus 67 kld~~~IIk~Pl~TEkamk~~E~nNtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p-------------~g~KKA 133 (153)
..++|+||++|++||+||.++|++|+|+|+||++|||+|||+|||++|||+|.+|||++++ +|||||
T Consensus 4 ~~~~~~iIk~P~iTEKa~~~~e~~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~kR~g~~~G~~~~~KKA 83 (93)
T 3r8s_T 4 EERLLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKA 83 (93)
T ss_dssp HHHHHHHEEEECCSHHHHHHHHTTSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCBCCSSSSCCBCCCEEEE
T ss_pred hhhHHhhhhccccCHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCceeeeCCccccCCCcEEE
Confidence 4578999999999999999999999999999999999999999999999999999999988 589999
Q ss_pred EEEcCCCCc
Q 031794 134 YVRLTPDYD 142 (153)
Q Consensus 134 yV~L~~d~d 142 (153)
||+|++||+
T Consensus 84 iVtL~~g~~ 92 (93)
T 3r8s_T 84 YVTLKEGQN 92 (93)
T ss_dssp EEECCSCCC
T ss_pred EEEcCCcCC
Confidence 999999986
No 11
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.06 E-value=1.8 Score=31.70 Aligned_cols=55 Identities=13% Similarity=0.105 Sum_probs=41.9
Q ss_pred CeEEEEE--ecC-CCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCC-CCcHHHHHHhh
Q 031794 91 NTLVFIV--DIR-ADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTP-DYDALDVANKI 150 (153)
Q Consensus 91 NtlvF~V--d~k-AnK~qIKqAvekly~V~V~kVNTli~p~g~KKAyV~L~~-d~dAldvanki 150 (153)
+.++|+- +.. .++.+|+.+|+. || +|..|.... |..-+||++.. ..+|.+.+.++
T Consensus 18 G~il~v~~l~~~~~sredLke~F~~-~G-~V~~Vd~~~---g~~tgfVrf~~~~~~A~~av~~l 76 (121)
T 1owx_A 18 GCLLKFSGDLDDQTCREDLHILFSN-HG-EIKWIDFVR---GAKEGIILFKEKAKEALGKAKDA 76 (121)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHTCS-SC-CEEEEECCT---TCSEEEEEESSCHHHHHHHHHHT
T ss_pred CeEEEEecCCCCcCCHHHHHHHHHh-cC-CEEEEEEec---CCCEEEEEECCChHHHHHHHHHh
Confidence 6777766 556 889999999988 77 677777643 44469999998 56788877765
No 12
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.87 E-value=8.4 Score=25.36 Aligned_cols=55 Identities=13% Similarity=0.203 Sum_probs=39.6
Q ss_pred eEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCee--EEEEEcCCCCcHHHHH
Q 031794 92 TLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTK--KAYVRLTPDYDALDVA 147 (153)
Q Consensus 92 tlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~K--KAyV~L~~d~dAldva 147 (153)
-++--++...+..+|++.+...|| .|..|..+..+.|.- -|||.+....+|....
T Consensus 12 l~V~nLp~~~t~~~l~~~F~~~~G-~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~ 68 (104)
T 2dhg_A 12 LFVGDLTPDVDDGMLYEFFVKVYP-SCRGGKVVLDQTGVSKGYGFVKFTDELEQKRAL 68 (104)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHCT-TEEEEEEEECTTCCEEEEEEEEESCHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHHhCC-CeEEEEEEECCCCCccceEEEEECCHHHHHHHH
Confidence 444556778999999999999777 467777776655533 4999998776655443
No 13
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=71.05 E-value=13 Score=25.66 Aligned_cols=53 Identities=15% Similarity=0.100 Sum_probs=39.2
Q ss_pred EEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCee--EEEEEcCCCCcHHHHH
Q 031794 93 LVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTK--KAYVRLTPDYDALDVA 147 (153)
Q Consensus 93 lvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~K--KAyV~L~~d~dAldva 147 (153)
++--++..++..+|++.++. || .|..|..+..++|.- -|||.+....+|....
T Consensus 4 ~V~nlp~~~t~~~l~~~f~~-~G-~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~ 58 (166)
T 3md3_A 4 YVGNLDKAITEDILKQYFQV-GG-PIANIKIMIDKNNKNVNYAFVEYHQSHDANIAL 58 (166)
T ss_dssp EEEEEETTCCHHHHHHHHGG-GS-CEEEEEEECCCC-CCEEEEEEEESSHHHHHHHH
T ss_pred EECCCCCcCCHHHHHHHHHh-cC-CeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHH
Confidence 45567889999999999986 56 588888877666533 4999998776655443
No 14
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=68.70 E-value=19 Score=23.11 Aligned_cols=53 Identities=11% Similarity=0.059 Sum_probs=37.6
Q ss_pred EEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCee--EEEEEcCCCCcHHHHH
Q 031794 93 LVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTK--KAYVRLTPDYDALDVA 147 (153)
Q Consensus 93 lvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~K--KAyV~L~~d~dAldva 147 (153)
++--++...+..+|++.++. || .|..|.....++|.- -|||.+....+|....
T Consensus 20 ~v~nlp~~~~~~~l~~~F~~-~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~ 74 (95)
T 2ywk_A 20 FVGNLEARVREEILYELFLQ-AG-PLTKVTICKDREGKPKSFGFVCFKHPESVSYAI 74 (95)
T ss_dssp EEECCCTTCCHHHHHHHHGG-GS-CEEEEEEEECTTSCEEEEEEEEESSTHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHHh-cC-CEEEEEEEECCCCCCceEEEEEECCHHHHHHHH
Confidence 33345678999999999987 55 577777776665532 5999998877765443
No 15
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.51 E-value=14 Score=24.17 Aligned_cols=54 Identities=15% Similarity=0.210 Sum_probs=37.6
Q ss_pred eEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCe--eEEEEEcCCCCcHHHHH
Q 031794 92 TLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGT--KKAYVRLTPDYDALDVA 147 (153)
Q Consensus 92 tlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~--KKAyV~L~~d~dAldva 147 (153)
-++--++..++..+|++.++. || .|..|.....+.|. --|||.+....+|....
T Consensus 20 l~v~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~ 75 (100)
T 2do4_A 20 LFISGLPFSCTKEELEEICKA-HG-TVKDLRLVTNRAGKPKGLAYVEYENESQASQAV 75 (100)
T ss_dssp EEEESCCTTCCHHHHHHHHTT-TS-CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-CC-CeEEEEEEECCCCCEEeEEEEEECCHHHHHHHH
Confidence 344445678999999999987 55 57777777666543 35999998766655443
No 16
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.29 E-value=19 Score=23.95 Aligned_cols=55 Identities=16% Similarity=0.227 Sum_probs=38.0
Q ss_pred eEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCe--eEEEEEcCCCCcHHHHHH
Q 031794 92 TLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGT--KKAYVRLTPDYDALDVAN 148 (153)
Q Consensus 92 tlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~--KKAyV~L~~d~dAldvan 148 (153)
-++--++...+..+|++.+.. || .|..|..+..++|. --|||.+....+|.....
T Consensus 18 l~V~nlp~~~~~~~l~~~f~~-~G-~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~ 74 (114)
T 2do0_A 18 VFVANLDYKVGWKKLKEVFSM-AG-VVVRADILEDKDGKSRGIGTVTFEQSIEAVQAIS 74 (114)
T ss_dssp EEEESCCTTCCHHHHHHHHTT-TS-CEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHH
Confidence 344445678999999998886 45 67778777666653 259999987666554433
No 17
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.14 E-value=30 Score=22.20 Aligned_cols=54 Identities=6% Similarity=0.012 Sum_probs=37.0
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHhCCceeeEE-EeeCCCCeeEEEEEcCCCCcHHHHH
Q 031794 91 NTLVFIVDIRADKRKIKDAVKKMYEIQTKKVN-TLIRPDGTKKAYVRLTPDYDALDVA 147 (153)
Q Consensus 91 NtlvF~Vd~kAnK~qIKqAvekly~V~V~kVN-Tli~p~g~KKAyV~L~~d~dAldva 147 (153)
.-++--++...+..+|++.+.. || .|..|. .+..+.... |||.+....+|....
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~-~G-~v~~~~~i~~~~~~~~-afV~f~~~~~a~~Ai 71 (96)
T 2e44_A 17 KLQIRNIPPHLQWEVLDSLLVQ-YG-VVESCEQVNTDSETAV-VNVTYSSKDQARQAL 71 (96)
T ss_dssp CEEEEEECSSSCHHHHHHHHHH-HS-CEEEEEEECCSSSSEE-EEEEESSHHHHHHHH
T ss_pred EEEEEcCCCCCCHHHHHHHHHh-cC-CeEEEEEeecCCCCCE-EEEEECCHHHHHHHH
Confidence 4667778889999999999987 45 466664 333333333 999998776655443
No 18
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=58.83 E-value=21 Score=23.24 Aligned_cols=51 Identities=24% Similarity=0.207 Sum_probs=35.0
Q ss_pred EEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHH
Q 031794 93 LVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVA 147 (153)
Q Consensus 93 lvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~KKAyV~L~~d~dAldva 147 (153)
++--++...+..+|++.++.+ | .|..|.....+.| -|||.+....+|....
T Consensus 4 ~V~nLp~~~t~~~l~~~F~~~-G-~i~~v~i~~~~~g--~afV~f~~~~~a~~A~ 54 (101)
T 2hvz_A 4 YVGNLGTGAGKGELERAFSYY-G-PLRTVWIARNPPG--FAFVEFEDPRDAEDAV 54 (101)
T ss_dssp EEECCCSSCSHHHHHHHHHHH-C-CCSEEEEESSSSS--EEEEECSSHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHhc-C-CeEEEEEeeCCCC--EEEEEECCHHHHHHHH
Confidence 334456789999999999885 4 4666665544445 4999998776655443
No 19
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.73 E-value=19 Score=24.72 Aligned_cols=45 Identities=18% Similarity=0.079 Sum_probs=33.5
Q ss_pred cCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHH
Q 031794 99 IRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVA 147 (153)
Q Consensus 99 ~kAnK~qIKqAvekly~V~V~kVNTli~p~g~KKAyV~L~~d~dAldva 147 (153)
..++..+|++.+++ || +|..|..+-.+.|+ |||.+....+|.+..
T Consensus 27 ~~~te~~L~~~F~~-~G-~V~~v~i~~~~rGf--aFVeF~~~~~A~~Ai 71 (100)
T 2d9o_A 27 GGYSKDVLLRLLQK-YG-EVLNLVLSSKKPGT--AVVEFATVKAAELAV 71 (100)
T ss_dssp CSCCHHHHHHHHHT-TS-CEEEEEEESSSSSE--EEEEESCHHHHHHHH
T ss_pred CCCCHHHHHHHHHh-cC-CEEEEEEccCCCCE--EEEEECCHHHHHHHH
Confidence 46899999999987 56 57777766555665 999998776665543
No 20
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=57.40 E-value=7.8 Score=25.52 Aligned_cols=52 Identities=17% Similarity=0.246 Sum_probs=36.7
Q ss_pred EEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCC-Cee--EEEEEcCCCCcHHHH
Q 031794 94 VFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPD-GTK--KAYVRLTPDYDALDV 146 (153)
Q Consensus 94 vF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~-g~K--KAyV~L~~d~dAldv 146 (153)
+--.+..++..+|++.++. ||..|..|..+..+. |.- =|||.+....+|...
T Consensus 6 v~nLp~~~te~~l~~~F~~-~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~A 60 (91)
T 2lxi_A 6 LRMLPQAATEDDIRGQLQS-HGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRW 60 (91)
T ss_dssp EETCCSSCCHHHHHHHHHH-HTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHH-hCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHH
Confidence 3346778999999999987 677777777665432 211 399999877665543
No 21
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=57.36 E-value=12 Score=24.58 Aligned_cols=50 Identities=14% Similarity=0.049 Sum_probs=37.9
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHH
Q 031794 91 NTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDAL 144 (153)
Q Consensus 91 NtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~KKAyV~L~~d~dAl 144 (153)
+-++--....++..++++.+++ || .|..|..+..+.|+ |||.+....+|.
T Consensus 13 ~l~V~~Lp~~~te~~L~~~F~~-~G-~i~~v~i~~~srGf--aFV~F~~~~~A~ 62 (89)
T 3d2w_A 13 KVFVGRCTEDMTAEELQQFFCQ-YG-EVVDVFIPKPFRAF--AFVTFADDKVAQ 62 (89)
T ss_dssp EEEEESCCTTCCHHHHHHHHTT-TS-CEEEEECCSSCCSE--EEEEESCHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHhc-cC-CEEEEEEeeCCCCE--EEEEECCHHHHH
Confidence 4555567778999999999987 56 47788776666675 999998766654
No 22
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=56.19 E-value=18 Score=23.38 Aligned_cols=51 Identities=10% Similarity=0.096 Sum_probs=34.4
Q ss_pred EEEecCCCHHHHHHHHHHHhCCceeeEEEeeCC-CCe--eEEEEEcCCCCcHHHHH
Q 031794 95 FIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRP-DGT--KKAYVRLTPDYDALDVA 147 (153)
Q Consensus 95 F~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p-~g~--KKAyV~L~~d~dAldva 147 (153)
--++...+..+|++.+.. || .|..|..+..+ .|. --|||++....+|....
T Consensus 14 ~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 67 (99)
T 1whw_A 14 RNLSYTSSEEDLEKLFSA-YG-PLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAY 67 (99)
T ss_dssp ECCCTTCCHHHHHHHHHT-TS-CEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHh-cC-CEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHH
Confidence 335668999999999987 45 56667665443 222 24999998776655443
No 23
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.08 E-value=23 Score=25.25 Aligned_cols=47 Identities=4% Similarity=0.023 Sum_probs=34.2
Q ss_pred EecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHH
Q 031794 97 VDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVAN 148 (153)
Q Consensus 97 Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~KKAyV~L~~d~dAldvan 148 (153)
.+...+..++++.+++ || .|..|... ...| =|||++....||.+...
T Consensus 35 L~~~~te~~L~~~F~~-fG-~v~~v~i~-~~rg--faFV~f~~~~~A~~Ai~ 81 (114)
T 2cq2_A 35 LGNGVSRNQLLPVLEK-CG-LVDALLMP-PNKP--YSFARYRTTEESKRAYV 81 (114)
T ss_dssp GGGTCCHHHHHHHHHH-HS-CEEEEECC-TTCS--CEEEEESSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHh-cC-CeEEEEEe-CCCC--EEEEEECCHHHHHHHHH
Confidence 4568999999999987 68 67777543 2234 49999998777665544
No 24
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=56.08 E-value=27 Score=24.25 Aligned_cols=55 Identities=16% Similarity=0.285 Sum_probs=40.0
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeE--EEEEcCCCCcHHHHH
Q 031794 91 NTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKK--AYVRLTPDYDALDVA 147 (153)
Q Consensus 91 NtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~KK--AyV~L~~d~dAldva 147 (153)
+-++--++...+..+|++.++. ||- |..|..+..++|.-+ |||++....+|....
T Consensus 97 ~l~v~nl~~~~t~~~l~~~F~~-~G~-i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~ 153 (175)
T 3nmr_A 97 KLFIGMISKKCTENDIRVMFSS-FGQ-IEECRILRGPDGLSRGCAFVTFTTRAMAQTAI 153 (175)
T ss_dssp EEEEESCCTTCCHHHHHHHHGG-GSC-EEEEEEEECTTSCEEEEEEEEESSHHHHHHHH
T ss_pred eEEEcCCCCcCCHHHHHHHHHh-CCC-EEEEEEEECCCCCEEEEEEEEECCHHHHHHHH
Confidence 3445556778999999999987 553 778888777776544 999998776665443
No 25
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.00 E-value=14 Score=24.85 Aligned_cols=51 Identities=12% Similarity=0.219 Sum_probs=34.9
Q ss_pred EEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCC-eeEEEEEcCCCCcHHHHHH
Q 031794 96 IVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDG-TKKAYVRLTPDYDALDVAN 148 (153)
Q Consensus 96 ~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g-~KKAyV~L~~d~dAldvan 148 (153)
-++...+..+|++.++. || .|..|.....+++ .--|||.+....+|.....
T Consensus 36 nLp~~~te~~l~~~F~~-~G-~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~ 87 (109)
T 2err_A 36 NIPFRFRDPDLRQMFGQ-FG-KILDVEIIFNERGSKGFGFVTFENSADADRARE 87 (109)
T ss_dssp SCCTTCCHHHHHHHGGG-TC-CCSCEEECCBTTBCTTEEEEECCCSHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHh-cC-CEEEEEEEECCCCCceEEEEEECCHHHHHHHHH
Confidence 34568999999999987 44 4666766554432 2259999998877655443
No 26
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=55.28 E-value=26 Score=22.85 Aligned_cols=49 Identities=14% Similarity=0.325 Sum_probs=35.2
Q ss_pred EecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCee--EEEEEcCCCCcHHHHH
Q 031794 97 VDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTK--KAYVRLTPDYDALDVA 147 (153)
Q Consensus 97 Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~K--KAyV~L~~d~dAldva 147 (153)
++...+..+|++.+.. || .|..|..+..+.|.- -|||.+....+|....
T Consensus 23 Lp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai 73 (105)
T 2dnh_A 23 LNKQQSEEDVLRLFQP-FG-VIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAI 73 (105)
T ss_dssp CCTTCCHHHHHHHHTT-TS-CEEEEEEEECSSSCEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHh-cC-CeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHH
Confidence 5678899999998876 45 377888777666533 4999998766655443
No 27
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=54.87 E-value=32 Score=22.85 Aligned_cols=54 Identities=11% Similarity=0.152 Sum_probs=37.7
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCC-Cee--EEEEEcCCCCcHHHH
Q 031794 91 NTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPD-GTK--KAYVRLTPDYDALDV 146 (153)
Q Consensus 91 NtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~-g~K--KAyV~L~~d~dAldv 146 (153)
+-+|--++..++..+|++.++. || .|..|.....+. |.- =|||.+....+|...
T Consensus 21 ~lfV~nLp~~~te~~L~~~F~~-~G-~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~A 77 (99)
T 4fxv_A 21 NLIVNYLPQNMTQDELRSLFSS-IG-EVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77 (99)
T ss_dssp EEEEESCCTTCCHHHHHHHHHT-TS-CEEEEEEEECSSSCCEEEEEEEEESSHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-cC-CEEEeEeeecCCCCcccccEEEEECCHHHHHHH
Confidence 3444456778999999999987 56 577777766443 433 399999877665543
No 28
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=54.40 E-value=37 Score=21.27 Aligned_cols=52 Identities=15% Similarity=0.259 Sum_probs=36.3
Q ss_pred EEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCC-Cee--EEEEEcCCCCcHHHH
Q 031794 93 LVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPD-GTK--KAYVRLTPDYDALDV 146 (153)
Q Consensus 93 lvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~-g~K--KAyV~L~~d~dAldv 146 (153)
++--++...+..+|++.++. || .|..|..+..+. |.- =|||++....+|...
T Consensus 15 ~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A 69 (87)
T 3s7r_A 15 FVGGLSWDTSKKDLKDYFTK-FG-EVVDCTIKMDPNTGRSRGFGFILFKDAASVEKV 69 (87)
T ss_dssp EEECCCTTCCHHHHHHHHTT-TS-CEEEEEEEECTTTCCEEEEEEEEESSTHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHh-CC-CEEEEEEeecCCCCccccEEEEEECCHHHHHHH
Confidence 34446678999999999876 55 677887766554 332 399999877665443
No 29
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=53.28 E-value=25 Score=21.91 Aligned_cols=53 Identities=13% Similarity=0.109 Sum_probs=35.3
Q ss_pred EEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCC-CCee--EEEEEcCCCCcHHHHH
Q 031794 93 LVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRP-DGTK--KAYVRLTPDYDALDVA 147 (153)
Q Consensus 93 lvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p-~g~K--KAyV~L~~d~dAldva 147 (153)
++--++...+..+|++.++. || .|..|.....+ .|.. -|||.+....+|....
T Consensus 11 ~V~nl~~~~~~~~l~~~f~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 66 (85)
T 3mdf_A 11 YVGGLAEEVDDKVLHAAFIP-FG-DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAI 66 (85)
T ss_dssp EEECCCTTCCHHHHHHHHGG-GS-CEEEEECCEETTTTEECSEEEEEESSHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHhc-cC-CEEEEEEEECCCCCccccEEEEEECCHHHHHHHH
Confidence 33445668999999999987 56 56677665442 2332 3999998776655443
No 30
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=53.18 E-value=20 Score=24.38 Aligned_cols=53 Identities=17% Similarity=0.156 Sum_probs=37.2
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHH
Q 031794 90 NNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVAN 148 (153)
Q Consensus 90 nNtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~KKAyV~L~~d~dAldvan 148 (153)
..-+|--++..++..+|++.++. || +|..|..+. +|+ |||.+....+|.....
T Consensus 17 ~~l~V~nLp~~~t~~~l~~~F~~-~G-~v~~~~i~~--~g~--afV~f~~~~~a~~Ai~ 69 (115)
T 3beg_B 17 NRVVVSGLPPSGSWQDLKDHMRE-AG-DVCYADVYR--DGT--GVVEFVRKEDMTYAVR 69 (115)
T ss_dssp CCEEEEECCSSCCTTHHHHHHGG-GS-CEEEEEECT--TSE--EEEEESSHHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEec--CCE--EEEEECCHHHHHHHHH
Confidence 34566677788999999999886 45 576776543 364 9999987666554433
No 31
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=52.65 E-value=32 Score=21.85 Aligned_cols=54 Identities=19% Similarity=0.248 Sum_probs=37.2
Q ss_pred eEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCC-Ce--eEEEEEcCCCCcHHHHH
Q 031794 92 TLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPD-GT--KKAYVRLTPDYDALDVA 147 (153)
Q Consensus 92 tlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~-g~--KKAyV~L~~d~dAldva 147 (153)
-++--++...+..+|++.++. || .|..|.....+. |. --|||++....+|....
T Consensus 18 l~v~nlp~~~t~~~l~~~f~~-~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 74 (95)
T 2cqc_A 18 LGVFGLSLYTTERDLREVFSK-YG-PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAK 74 (95)
T ss_dssp EEEESCCSSCCHHHHHHHHHT-TS-CEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHh-cC-CeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHH
Confidence 344456678999999999988 55 577777766554 22 25999998766655443
No 32
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=52.56 E-value=27 Score=21.78 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=36.9
Q ss_pred eEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCC----eeEEEEEcCCCCcHHHHHH
Q 031794 92 TLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDG----TKKAYVRLTPDYDALDVAN 148 (153)
Q Consensus 92 tlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g----~KKAyV~L~~d~dAldvan 148 (153)
-++--++...+..+|++.++. || .|..|.....++. .--|||.+....+|.....
T Consensus 7 l~V~nlp~~~t~~~l~~~F~~-~G-~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 65 (88)
T 4a8x_A 7 VHIGRLTRNVTKDHIMEIFST-YG-KIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALK 65 (88)
T ss_dssp EEEECCCTTCCHHHHHHHHHT-TS-CEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-CC-CEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHH
Confidence 344456778999999999987 55 5666666554431 2259999987766655443
No 33
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=52.23 E-value=33 Score=22.37 Aligned_cols=56 Identities=21% Similarity=0.320 Sum_probs=37.6
Q ss_pred EEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCC--CC--eeEEEEEcCCCCcHHHHHHhh
Q 031794 93 LVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRP--DG--TKKAYVRLTPDYDALDVANKI 150 (153)
Q Consensus 93 lvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p--~g--~KKAyV~L~~d~dAldvanki 150 (153)
++--++...+..+|++.+.. || .|..|..+..+ .| .--|||.+....+|......+
T Consensus 19 ~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 78 (107)
T 2cph_A 19 LVRNIPFQANQREIRELFST-FG-ELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL 78 (107)
T ss_dssp EEESCCTTCCHHHHHHHHHT-TS-CEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHH
T ss_pred EEeCCCCcCCHHHHHHHHHc-cC-CeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHh
Confidence 33345678999999999987 56 57777766542 21 124999998777766554443
No 34
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=51.82 E-value=40 Score=26.11 Aligned_cols=55 Identities=9% Similarity=0.132 Sum_probs=40.4
Q ss_pred eEEEEEecCCCHHHHHHHHHHHhCC-ceeeEEEeeCC-CCee--EEEEEcCCCCcHHHHH
Q 031794 92 TLVFIVDIRADKRKIKDAVKKMYEI-QTKKVNTLIRP-DGTK--KAYVRLTPDYDALDVA 147 (153)
Q Consensus 92 tlvF~Vd~kAnK~qIKqAvekly~V-~V~kVNTli~p-~g~K--KAyV~L~~d~dAldva 147 (153)
-||-.++..++..+|++.|+. ||+ +|..|..+... .|.- =|||.+....+|....
T Consensus 71 lfVgnL~~~~te~~L~~~F~~-~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai 129 (229)
T 3q2s_C 71 LYIGNLTWWTTDEDLTEAVHS-LGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLM 129 (229)
T ss_dssp EEEESCCTTCCHHHHHHHHHT-TTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHH-HCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHH
Confidence 455556678999999999976 676 89899887754 3332 3999999877765543
No 35
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=50.73 E-value=65 Score=22.95 Aligned_cols=68 Identities=12% Similarity=0.234 Sum_probs=43.2
Q ss_pred cchhhhhhhccCCeEEEEEec---CCCHHHHHHHHHHHhCCceeeE--EEeeC-C-CCeeEEEEEcCCCCcHHHHHHhh
Q 031794 79 TTESAMKKIEDNNTLVFIVDI---RADKRKIKDAVKKMYEIQTKKV--NTLIR-P-DGTKKAYVRLTPDYDALDVANKI 150 (153)
Q Consensus 79 ~TEkamk~~E~nNtlvF~Vd~---kAnK~qIKqAvekly~V~V~kV--NTli~-p-~g~KKAyV~L~~d~dAldvanki 150 (153)
+.+....++.. .+++|.|.- ..+|.+|+..+-++|+++..-| -.+.+ - +|.=..|... ||.+|.|.++
T Consensus 6 ~~~~~N~LL~R-ke~~~~v~H~~~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I---Yds~e~akk~ 80 (102)
T 1ywx_A 6 ISDRNNPLLQR-REIKFTVSFDAATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI---YNDEKAMATI 80 (102)
T ss_dssp EEEEEETTTTE-EEEEEEEECSSCCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE---CSCHHHHHHS
T ss_pred EEeeecCCcCc-EEEEEEEEcCCCCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE---ECCHHHHHhh
Confidence 34445556654 577886643 3589999999999999976333 22222 2 3444555544 6778888764
No 36
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.44 E-value=27 Score=23.61 Aligned_cols=53 Identities=11% Similarity=-0.002 Sum_probs=37.2
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCee--EEEEEcCCCCcHHH
Q 031794 91 NTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTK--KAYVRLTPDYDALD 145 (153)
Q Consensus 91 NtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~K--KAyV~L~~d~dAld 145 (153)
.-+|--++..++..+|++.++. || .|..|.....++|.- =|||.+....+|..
T Consensus 13 ~lfV~~Lp~~~te~~L~~~F~~-~G-~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~ 67 (103)
T 1s79_A 13 SVYIKGFPTDATLDDIKEWLED-KG-QVLNIQMRRTLHKAFKGSIFVVFDSIESAKK 67 (103)
T ss_dssp CEEEECCCTTCCHHHHHHHHHT-SS-CEEEEEEECCCTTSCCCEEEEEESSHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHhh-cC-CEEEEEEEECCCCCCccEEEEEECCHHHHHH
Confidence 3455556778999999999987 66 578888776544211 39999986655443
No 37
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=50.31 E-value=34 Score=24.21 Aligned_cols=66 Identities=11% Similarity=0.198 Sum_probs=41.3
Q ss_pred hhhhhhhccCCeEEEEEec----CCCHHHHHHHHHHHhCCceeeEEE--eeC--CCCeeEEEEEcCCCCcHHHHHHhh
Q 031794 81 ESAMKKIEDNNTLVFIVDI----RADKRKIKDAVKKMYEIQTKKVNT--LIR--PDGTKKAYVRLTPDYDALDVANKI 150 (153)
Q Consensus 81 Ekamk~~E~nNtlvF~Vd~----kAnK~qIKqAvekly~V~V~kVNT--li~--p~g~KKAyV~L~~d~dAldvanki 150 (153)
+....++.. .+++|.|.- ..+|.+|+..+-++|+++..-|=. +.+ -+|.=..|... ||.+|.|.++
T Consensus 8 ~~~N~LL~R-ke~~~~v~hp~~~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I---Yds~e~~kk~ 81 (98)
T 2g1d_A 8 KRDNPILKR-KEIKYVLKFDSSRTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI---YADKPSAMLY 81 (98)
T ss_dssp EEECSSSCE-EEEEEEEECCTTSCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE---ESHHHHHHHH
T ss_pred eeecCCcCc-EEEEEEEEeCCCCCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE---ECCHHHHHhh
Confidence 334445554 578887654 569999999999999986543311 111 12444444443 6888888875
No 38
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.43 E-value=25 Score=23.28 Aligned_cols=52 Identities=23% Similarity=0.267 Sum_probs=33.4
Q ss_pred EEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHH
Q 031794 94 VFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVA 147 (153)
Q Consensus 94 vF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~KKAyV~L~~d~dAldva 147 (153)
+--++...+..+|++.++. || .|..|.........--|||.+....+|....
T Consensus 27 V~nLp~~~t~~~l~~~F~~-~G-~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~ 78 (109)
T 1x4a_A 27 VGNLPPDIRTKDIEDVFYK-YG-AIRDIDLKNRRGGPPFAFVEFEDPRDAEDAV 78 (109)
T ss_dssp EESCCTTCCHHHHHHHHGG-GS-CEEEEEECCSSSSSCCEEEEESCHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEECCCCCcEEEEEECCHHHHHHHH
Confidence 3345668999999999988 44 4555555332222236999998776655443
No 39
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=48.96 E-value=46 Score=21.67 Aligned_cols=53 Identities=19% Similarity=0.200 Sum_probs=35.8
Q ss_pred EEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCC-Ce--eEEEEEcCCCCcHHHHH
Q 031794 93 LVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPD-GT--KKAYVRLTPDYDALDVA 147 (153)
Q Consensus 93 lvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~-g~--KKAyV~L~~d~dAldva 147 (153)
++--++..++..+|++.+.. || .|..|.....+. |. --|||.+....+|....
T Consensus 27 ~V~nlp~~~t~~~l~~~f~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 82 (106)
T 1p27_B 27 FVTGVHEEATEEDIHDKFAE-YG-EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAM 82 (106)
T ss_dssp EEECCCTTCCHHHHHHHHGG-GS-CEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHhc-cC-CeEEEEEEecCCCCceeeEEEEEECCHHHHHHHH
Confidence 33345667999999999877 45 577777765543 32 24999998776655443
No 40
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=48.15 E-value=32 Score=23.25 Aligned_cols=54 Identities=15% Similarity=0.265 Sum_probs=38.4
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCee-EEEEEcCCCCcHHHH
Q 031794 91 NTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTK-KAYVRLTPDYDALDV 146 (153)
Q Consensus 91 NtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~K-KAyV~L~~d~dAldv 146 (153)
|-||=-++..++..+|++.+.. || .|..|..+...++.| =|||.+....+|...
T Consensus 7 ~lfV~nLp~~~te~~L~~~F~~-~G-~v~~v~i~~d~~~~kg~afV~f~~~~~A~~A 61 (115)
T 4f25_A 7 NIFIKNLDKSIDNKALYDTFSA-FG-NILSCKVVCDENGSKGYGFVHFETQEAAERA 61 (115)
T ss_dssp EEEEESCCTTCCHHHHHHHHGG-GS-CEEEEEEEEETTEEEEEEEEEESCHHHHHHH
T ss_pred EEEECCCCCCCCHHHHHHHHhc-cC-CEEEEEEeecCCCCCceEEEEECCHHHHHHH
Confidence 4455557778999999999987 56 577777766554322 499999877665443
No 41
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=47.99 E-value=28 Score=23.78 Aligned_cols=52 Identities=13% Similarity=0.115 Sum_probs=35.2
Q ss_pred EEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCe--eEEEEEcCCCCcHHHHH
Q 031794 94 VFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGT--KKAYVRLTPDYDALDVA 147 (153)
Q Consensus 94 vF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~--KKAyV~L~~d~dAldva 147 (153)
+--++..++..+|++.++.+ |. |..|.......|. --|||.+....+|....
T Consensus 12 V~nLp~~~t~~~l~~~F~~~-G~-i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai 65 (116)
T 2fy1_A 12 IGGLNRETNEKMLKAVFGKH-GP-ISEVLLIKDRTSKSRGFAFITFENPADAKNAA 65 (116)
T ss_dssp EECCTTTCCHHHHHHHHHTS-SC-CSEEEEECSTTTTCCCEEEEECSSHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHhc-CC-EEEEEEEECCCCCcccEEEEEECCHHHHHHHH
Confidence 34456679999999999874 53 6677766544332 25999998776655443
No 42
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.72 E-value=33 Score=21.80 Aligned_cols=48 Identities=4% Similarity=0.159 Sum_probs=33.8
Q ss_pred EEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCe--eEEEEEcCCCCcHH
Q 031794 94 VFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGT--KKAYVRLTPDYDAL 144 (153)
Q Consensus 94 vF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~--KKAyV~L~~d~dAl 144 (153)
+--++..++..+|++.++.. .|..|..+....|. --|||.+....+|.
T Consensus 15 v~nLp~~~t~~~l~~~F~~~---~i~~v~i~~~~~g~~~g~afV~f~~~~~a~ 64 (91)
T 2dgw_A 15 LRGAPFNVTEKNVMEFLAPL---KPVAIRIVRNAHGNKTGYIFVDFSNEEEVK 64 (91)
T ss_dssp EECCCSSCCHHHHHHHHTTS---CCSEEEEEECTTSCEEEEEEEECSSHHHHH
T ss_pred EECCCCCCCHHHHHHHHhhC---CceEEEEEECCCCCCceEEEEEECCHHHHH
Confidence 33456789999999999886 56677776655542 25999998665543
No 43
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=47.51 E-value=40 Score=22.29 Aligned_cols=49 Identities=10% Similarity=0.184 Sum_probs=34.7
Q ss_pred EEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHH
Q 031794 94 VFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVA 147 (153)
Q Consensus 94 vF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~KKAyV~L~~d~dAldva 147 (153)
+--++...+..+|++.+.. || .|..|..+.. .| -|||.+....+|....
T Consensus 30 V~nl~~~~t~~~l~~~F~~-~G-~i~~v~i~~~-~g--~afV~f~~~~~a~~A~ 78 (109)
T 1x4g_A 30 CGGIASGLTDQLMRQTFSP-FG-QIMEIRVFPE-KG--YSFVRFSTHESAAHAI 78 (109)
T ss_dssp EECCSSCCCHHHHHHHHHH-HS-CEEEEEEETT-TT--EEEEEESSHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHh-cC-CeEEEEEeCC-CC--EEEEEECCHHHHHHHH
Confidence 3345567999999999987 67 5777765433 45 4999998776665544
No 44
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=47.39 E-value=14 Score=24.89 Aligned_cols=49 Identities=24% Similarity=0.268 Sum_probs=35.3
Q ss_pred EEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCee--EEEEEcCCCCcHHH
Q 031794 94 VFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTK--KAYVRLTPDYDALD 145 (153)
Q Consensus 94 vF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~K--KAyV~L~~d~dAld 145 (153)
|--++..++..+|++.++. |++ ..|..+..++|.- -|||.+....+|..
T Consensus 20 V~nLp~~~te~~l~~~F~~-~G~--~~v~i~~d~~g~~~G~afV~F~~~~~a~~ 70 (102)
T 1wez_A 20 MRGLPYRATENDIYNFFSP-LNP--MRVHIEIGPDGRVTGEADVEFATHEDAVA 70 (102)
T ss_dssp EESCCTTCCHHHHHHSSCS-CCC--SEEEEEESSSSCEEEEEEEECSSSHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHH-cCc--eEEEEEECCCCCEeeEEEEEECCHHHHHH
Confidence 3345668999999998877 673 3888777666644 49999997766543
No 45
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=47.04 E-value=49 Score=21.55 Aligned_cols=55 Identities=18% Similarity=0.280 Sum_probs=37.3
Q ss_pred CeEEEE--EecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCee--EEEEEcCCCCcHHHHH
Q 031794 91 NTLVFI--VDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTK--KAYVRLTPDYDALDVA 147 (153)
Q Consensus 91 NtlvF~--Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~K--KAyV~L~~d~dAldva 147 (153)
+.-+|+ ++...+..+|++.+.. || .|..|..+..+.|.- -|||.+....+|....
T Consensus 29 ~~~l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~ 87 (107)
T 3ulh_A 29 GGKLLVSNLDFGVSDADIQELFAE-FG-TLKKAAVHYDRSGRSLGTADVHFERKADALKAM 87 (107)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHT-TS-CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEECCCCCcceEEEEEECCHHHHHHHH
Confidence 344444 5568899999999987 45 466777766655532 5999998766655443
No 46
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.57 E-value=13 Score=25.82 Aligned_cols=48 Identities=15% Similarity=0.244 Sum_probs=34.3
Q ss_pred EEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCee--EEEEEcCCCCcHHH
Q 031794 95 FIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTK--KAYVRLTPDYDALD 145 (153)
Q Consensus 95 F~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~K--KAyV~L~~d~dAld 145 (153)
--+...++..+|++.++.+ .|..|..+..++|.- -|||.+....||..
T Consensus 22 ~nLp~~~te~dl~~~F~~~---~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~ 71 (109)
T 2dnn_A 22 HGMPFSAMENDVRDFFHGL---RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFE 71 (109)
T ss_dssp ECCCSSCCHHHHHHHTTTS---CCCEEEECCCTTCCCCSEEEEECSSHHHHHH
T ss_pred eCCCCCCCHHHHHHHhccC---CeeEEEEEECCCCCCCeEEEEEECCHHHHHH
Confidence 3355689999999999885 456777776555432 49999987666544
No 47
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.31 E-value=31 Score=22.51 Aligned_cols=50 Identities=12% Similarity=0.217 Sum_probs=34.3
Q ss_pred EEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCC-eeEEEEEcCCCCcHHHHH
Q 031794 96 IVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDG-TKKAYVRLTPDYDALDVA 147 (153)
Q Consensus 96 ~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g-~KKAyV~L~~d~dAldva 147 (153)
-++..++..+|++.++. || .|..|..+..+++ .--|||.+....+|....
T Consensus 22 nlp~~~t~~~l~~~f~~-~G-~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~ 72 (103)
T 2cq3_A 22 NIPFRFRDPDLRQMFGQ-FG-KILDVEIIFNERGSKGFGFVTFENSADADRAR 72 (103)
T ss_dssp SCCTTCCHHHHHHHGGG-TS-CEEEEEEECCTTTTCCEEEEEESCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHh-cC-CeEEEEEEecCCCCcEEEEEEECCHHHHHHHH
Confidence 34567999999998887 44 5667776655443 225999998776655443
No 48
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=45.94 E-value=43 Score=22.76 Aligned_cols=54 Identities=20% Similarity=0.273 Sum_probs=38.1
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCC-Cee--EEEEEcCCCCcHHHH
Q 031794 91 NTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPD-GTK--KAYVRLTPDYDALDV 146 (153)
Q Consensus 91 NtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~-g~K--KAyV~L~~d~dAldv 146 (153)
+-+|--++...+..++++.+++ || .|..|..+..+. |.- =|||.+....+|...
T Consensus 8 ~lfV~nL~~~~te~~L~~~F~~-~G-~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~A 64 (110)
T 3s8s_A 8 EVTFARLNDNVRETFLKDMCRK-YG-EVEEVEILLHPRTRKHLGLARVLFTSTRGAKET 64 (110)
T ss_dssp EEEEESCCTTCCHHHHHHHHTT-TS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHh-cC-CeeEEEEEECCCCCceeeEEEEEECCHHHHHHH
Confidence 3556667778999999998876 55 577888777664 322 389999876665443
No 49
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.91 E-value=40 Score=21.79 Aligned_cols=52 Identities=15% Similarity=0.144 Sum_probs=34.8
Q ss_pred EEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHHH
Q 031794 94 VFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPD-G--TKKAYVRLTPDYDALDVA 147 (153)
Q Consensus 94 vF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~-g--~KKAyV~L~~d~dAldva 147 (153)
+--++...+..+|++.++.+ | .|..|..+..+. | .--|||.+....+|....
T Consensus 17 v~nLp~~~t~~~l~~~f~~~-G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 71 (102)
T 1x5s_A 17 VGGLSFDTNEQSLEQVFSKY-G-QISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 71 (102)
T ss_dssp EESCCTTCCHHHHHHHHHHH-S-CCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHH
T ss_pred EECCCCCCCHHHHHHHHHhc-C-CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHH
Confidence 33456689999999999885 4 456666655432 1 125999998776665544
No 50
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=45.73 E-value=31 Score=22.93 Aligned_cols=50 Identities=14% Similarity=0.120 Sum_probs=34.5
Q ss_pred eEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHH
Q 031794 92 TLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVA 147 (153)
Q Consensus 92 tlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~KKAyV~L~~d~dAldva 147 (153)
-+|--++..++..+|++.+.. || +|..|..+. +| -|||.+....+|....
T Consensus 18 l~V~nLp~~~t~~~l~~~F~~-~G-~i~~~~i~~--~g--~afV~f~~~~~a~~Ai 67 (108)
T 1x4c_A 18 VVVSGLPPSGSWQDLKDHMRE-AG-DVCYADVYR--DG--TGVVEFVRKEDMTYAV 67 (108)
T ss_dssp EEEESCCSSCCHHHHHHHHGG-GS-CEEEEEEET--TT--EEEEEESSHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CEeEEEEec--CC--EEEEEECCHHHHHHHH
Confidence 444455678999999998886 55 566766543 36 4999998766654433
No 51
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=45.63 E-value=32 Score=23.28 Aligned_cols=53 Identities=19% Similarity=0.213 Sum_probs=35.0
Q ss_pred EEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHHH
Q 031794 93 LVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPD-G--TKKAYVRLTPDYDALDVA 147 (153)
Q Consensus 93 lvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~-g--~KKAyV~L~~d~dAldva 147 (153)
+|--++...+..+|++.++. || .|..|..+..+. | .--|||.+....+|....
T Consensus 26 ~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 81 (126)
T 3ex7_B 26 FVTGVHEEATEEDIHDKFAE-YG-EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAM 81 (126)
T ss_dssp EEESCCTTCCHHHHHHHHHT-TS-CEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEecCCCCccceEEEEEECCHHHHHHHH
Confidence 33445568899999999987 55 566776655431 2 125999998776655443
No 52
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.25 E-value=17 Score=23.89 Aligned_cols=47 Identities=13% Similarity=0.130 Sum_probs=33.9
Q ss_pred EecCCCHHHHHHHHHHHhCCceeeEEEeeCCC--Cee--EEEEEcCCCCcHHHH
Q 031794 97 VDIRADKRKIKDAVKKMYEIQTKKVNTLIRPD--GTK--KAYVRLTPDYDALDV 146 (153)
Q Consensus 97 Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~--g~K--KAyV~L~~d~dAldv 146 (153)
++..++..+|++.++. || |..|..+..++ |.- -|||.+....+|...
T Consensus 23 lp~~~t~~~l~~~F~~-~G--i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A 73 (104)
T 1wi8_A 23 LPYDVTEESIKEFFRG-LN--ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSA 73 (104)
T ss_dssp CCSSCCHHHHHHHTTT-SC--EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHH
T ss_pred CCCcCCHHHHHHHHHH-CC--ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHH
Confidence 5668999999999987 47 88888776553 221 499999876655443
No 53
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=45.16 E-value=31 Score=23.96 Aligned_cols=52 Identities=10% Similarity=0.073 Sum_probs=34.7
Q ss_pred eEEEEEecCCCHHHHHHHHHHHhCCceeeEEEe-eCCCCeeEEEEEcCCCCcHHHH
Q 031794 92 TLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTL-IRPDGTKKAYVRLTPDYDALDV 146 (153)
Q Consensus 92 tlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTl-i~p~g~KKAyV~L~~d~dAldv 146 (153)
-+|--++..++..++++.++. ||.+|..|... -.+.| -|||.+....+|.+.
T Consensus 31 l~VgnLp~~~te~dL~~~F~~-~G~~v~~v~i~~~~~rG--faFV~F~~~e~A~~A 83 (111)
T 2jvr_A 31 ITMKNLPEGCSWQDLKDLARE-NSLETTFSSVNTRDFDG--TGALEFPSEEILVEA 83 (111)
T ss_dssp EEEECSSCCCCHHHHHHHHHH-HTCCCSEEECSSCSSSC--CEEEEESSHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHH-hCCeeEEEEEEcCCCCC--EEEEEECCHHHHHHH
Confidence 344445668999999999987 46556566553 23446 499999876665443
No 54
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.99 E-value=21 Score=25.34 Aligned_cols=55 Identities=16% Similarity=0.198 Sum_probs=38.3
Q ss_pred CeEEEEE--ecCCCHHHHHHHHHHHhCC--ceeeEEEeeCCCCee--EEEEEcCCCCcHHH
Q 031794 91 NTLVFIV--DIRADKRKIKDAVKKMYEI--QTKKVNTLIRPDGTK--KAYVRLTPDYDALD 145 (153)
Q Consensus 91 NtlvF~V--d~kAnK~qIKqAvekly~V--~V~kVNTli~p~g~K--KAyV~L~~d~dAld 145 (153)
+..+|+- .-.++..+|++.++.+-.| .|..|..+...+|.- -|||.+....+|..
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~ 83 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQN 83 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHH
Confidence 3444543 5589999999999986555 367777776555533 49999987766544
No 55
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=44.94 E-value=43 Score=22.24 Aligned_cols=54 Identities=13% Similarity=0.146 Sum_probs=37.0
Q ss_pred eEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCC-Ce--eEEEEEcCCCCcHHHHH
Q 031794 92 TLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPD-GT--KKAYVRLTPDYDALDVA 147 (153)
Q Consensus 92 tlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~-g~--KKAyV~L~~d~dAldva 147 (153)
-++--++..++..+|++.++. || .|..|..+..+. |. --|||.+....+|....
T Consensus 28 l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 84 (114)
T 2cq4_A 28 VFCMQLAARIRPRDLEDFFSA-VG-KVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI 84 (114)
T ss_dssp EEEESCCTTCCHHHHHHHHTT-TS-CEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-CC-CEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH
Confidence 444556778999999999876 55 677777765443 21 14999998777765443
No 56
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=44.72 E-value=56 Score=23.45 Aligned_cols=64 Identities=16% Similarity=0.216 Sum_probs=41.2
Q ss_pred hhhhhccCCeEEEEEec----CCCHHHHHHHHHHHhCCceeeE--EEeeCC--CCeeEEEEEcCCCCcHHHHHHhh
Q 031794 83 AMKKIEDNNTLVFIVDI----RADKRKIKDAVKKMYEIQTKKV--NTLIRP--DGTKKAYVRLTPDYDALDVANKI 150 (153)
Q Consensus 83 amk~~E~nNtlvF~Vd~----kAnK~qIKqAvekly~V~V~kV--NTli~p--~g~KKAyV~L~~d~dAldvanki 150 (153)
...++.. .+++|.|.- ..+|.+|+..+-++|+++..-| -.+.+. +|.=..|... ||.+|.|.++
T Consensus 18 ~N~LL~R-ke~~~~v~Hpg~~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I---Yds~e~akk~ 89 (107)
T 2v94_A 18 ENKLIGR-KEIYFEIYHPGEPTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY---YYDKDRMLYI 89 (107)
T ss_dssp EETTTTE-EEEEEEEECTTSCCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE---ESSHHHHHHH
T ss_pred ecCCcCc-EEEEEEEEeCCCCCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE---ECCHHHHHhh
Confidence 3445554 578887654 4589999999999999965433 222222 3444455544 5778888765
No 57
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.72 E-value=48 Score=21.49 Aligned_cols=53 Identities=23% Similarity=0.282 Sum_probs=35.7
Q ss_pred EEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCC-Ce--eEEEEEcCCCCcHHHHHH
Q 031794 94 VFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPD-GT--KKAYVRLTPDYDALDVAN 148 (153)
Q Consensus 94 vF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~-g~--KKAyV~L~~d~dAldvan 148 (153)
+--++...+..+|++.++. || .|..|.....+. |. --|||++....+|.....
T Consensus 18 V~nLp~~~t~~~l~~~f~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 73 (103)
T 2dnm_A 18 VDNLTYRTSPDSLRRVFEK-YG-RVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEA 73 (103)
T ss_dssp EESCCTTCCHHHHHHHHTT-TS-CEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHh-cC-CEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHH
Confidence 3335668999999999887 45 466776655433 21 249999998877665544
No 58
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=44.08 E-value=33 Score=23.28 Aligned_cols=53 Identities=19% Similarity=0.277 Sum_probs=35.4
Q ss_pred eEEEE--EecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCe--eEEEEEcCCCCcHHHH
Q 031794 92 TLVFI--VDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGT--KKAYVRLTPDYDALDV 146 (153)
Q Consensus 92 tlvF~--Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~--KKAyV~L~~d~dAldv 146 (153)
+-+|+ ++...+..+|++.++. || .|..|.....+.|. --|||.+....+|...
T Consensus 36 ~~l~V~nlp~~~t~~~l~~~F~~-~G-~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~A 92 (124)
T 2kt5_A 36 AKLLVSNLDFGVSDADIQELFAE-FG-TLKKAAVDYDRSGRSLGTADVHFERRADALKA 92 (124)
T ss_dssp EEEEEESCCSSCCHHHHHHHHHT-TS-CCSEEEEECCSSSSCCSEEEEEESSHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEEECCCCCEeeEEEEEECCHHHHHHH
Confidence 44444 4567999999999988 45 46677666544332 2599999876665443
No 59
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=43.89 E-value=39 Score=20.59 Aligned_cols=36 Identities=11% Similarity=0.195 Sum_probs=31.4
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEee
Q 031794 90 NNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLI 125 (153)
Q Consensus 90 nNtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli 125 (153)
..++.+.|+...+=.++|+.++..+++.+.....+.
T Consensus 10 g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~ 45 (76)
T 3a9j_A 10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (76)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 357889999999999999999999999988877654
No 60
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=43.58 E-value=64 Score=20.83 Aligned_cols=51 Identities=24% Similarity=0.399 Sum_probs=36.1
Q ss_pred EEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCe--eEEEEEcCCCCcHHHH
Q 031794 94 VFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGT--KKAYVRLTPDYDALDV 146 (153)
Q Consensus 94 vF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~--KKAyV~L~~d~dAldv 146 (153)
+--++..++..+|++.+.. || .|..|.....+.|. --|||.+....+|...
T Consensus 14 V~nLp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A 66 (102)
T 2xs2_A 14 VGGIDVRMDETEIRSFFAR-YG-SVKEVKIITDRTGVSKGYGFVSFYNDVDVQKI 66 (102)
T ss_dssp EECCCTTCCHHHHHHHHGG-GS-CEEEEEEEECTTSCEEEEEEEEESSCCCHHHH
T ss_pred EeCCCCCCCHHHHHHHHHh-CC-CeEEEEEEECCCCCccceEEEEECCHHHHHHH
Confidence 3335668999999999877 45 56777776655543 2489999988776544
No 61
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=43.27 E-value=35 Score=22.39 Aligned_cols=50 Identities=14% Similarity=0.101 Sum_probs=34.0
Q ss_pred EEecCCCHHHHHHHHHHHhCCceeeEEEeeC------CCCeeEEEEEcCCCCcHHHHHH
Q 031794 96 IVDIRADKRKIKDAVKKMYEIQTKKVNTLIR------PDGTKKAYVRLTPDYDALDVAN 148 (153)
Q Consensus 96 ~Vd~kAnK~qIKqAvekly~V~V~kVNTli~------p~g~KKAyV~L~~d~dAldvan 148 (153)
-++...+..+|++.+..+ |-.|..|..+.. +.| -|||.+....+|.....
T Consensus 15 nLp~~~t~~~l~~~f~~~-G~~v~~v~i~~~~~~~g~~~g--~afV~f~~~~~A~~A~~ 70 (109)
T 2dis_A 15 GIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRG--FAFVEYESHRAAAMARR 70 (109)
T ss_dssp CCCTTSCHHHHHHHHHHH-STTEEEEECCSSSCTTTTTCC--EEEEEESSHHHHHHHHT
T ss_pred CCCCcCCHHHHHHHHHHh-cCCceEEEEEccCCCCCCcCc--EEEEEecCHHHHHHHHH
Confidence 345679999999999884 544777765421 224 49999987766554443
No 62
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.21 E-value=41 Score=21.85 Aligned_cols=53 Identities=13% Similarity=0.246 Sum_probs=35.4
Q ss_pred eEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCee--EEEEEcCCCCcHHHHH
Q 031794 92 TLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTK--KAYVRLTPDYDALDVA 147 (153)
Q Consensus 92 tlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~K--KAyV~L~~d~dAldva 147 (153)
-++--++...+..+|++.++. || .|..|..+.. .|.- -|||.+....+|....
T Consensus 18 l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~ 72 (103)
T 2d9p_A 18 LYVKNLDDGIDDERLRKAFSP-FG-TITSAKVMME-GGRSKGFGFVCFSSPEEATKAV 72 (103)
T ss_dssp EEEECCCTTCCHHHHHHTTTT-TS-CEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHH
Confidence 444455678999999988876 55 4777776655 3332 4999998666655443
No 63
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=43.20 E-value=32 Score=25.57 Aligned_cols=55 Identities=18% Similarity=0.265 Sum_probs=36.3
Q ss_pred CeEEEE--EecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCe--eEEEEEcCCCCcHHHHH
Q 031794 91 NTLVFI--VDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGT--KKAYVRLTPDYDALDVA 147 (153)
Q Consensus 91 NtlvF~--Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~--KKAyV~L~~d~dAldva 147 (153)
++-+|+ ++..++..+|++.+.. || .|..|.....+.|. --|||.+....+|....
T Consensus 88 ~~~l~V~nLp~~~te~~L~~~F~~-~G-~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai 146 (177)
T 2f3j_A 88 GAKLLVSNLDFGVSDADIQELFAE-FG-TLKKAAVDYDRSGRSLGTADVHFERRADALKAM 146 (177)
T ss_dssp CEEEEEECCCSCCCHHHHHHHHHH-TS-CCSEEEECCCTTSSCSCCEEEEESCHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHH
Confidence 344454 5567999999999998 55 45666665544332 24999998766655443
No 64
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.40 E-value=44 Score=21.23 Aligned_cols=51 Identities=6% Similarity=0.136 Sum_probs=34.5
Q ss_pred EEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHHH
Q 031794 95 FIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPD-G--TKKAYVRLTPDYDALDVA 147 (153)
Q Consensus 95 F~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~-g--~KKAyV~L~~d~dAldva 147 (153)
--++...+..+|++.++. || .|..|.....++ | .--|||++....+|....
T Consensus 11 ~nlp~~~t~~~l~~~f~~-~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 64 (95)
T 2dnz_A 11 GSLHFNITEDMLRGIFEP-FG-KIDNIVLMKDSDTGRSKGYGFITFSDSECARRAL 64 (95)
T ss_dssp ESCCTTCCHHHHHHHHTT-TS-CEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHh-cC-CEeEEEEeecCCCCceeeEEEEEECCHHHHHHHH
Confidence 334567999999999977 45 577777665443 1 125999998776655443
No 65
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=42.19 E-value=51 Score=22.62 Aligned_cols=52 Identities=10% Similarity=0.227 Sum_probs=36.9
Q ss_pred EEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCC-Ce--eEEEEEcCCCCcHHHHHH
Q 031794 95 FIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPD-GT--KKAYVRLTPDYDALDVAN 148 (153)
Q Consensus 95 F~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~-g~--KKAyV~L~~d~dAldvan 148 (153)
--++..++..+|++.++. || .|..|..+..++ |. --|||.+....+|.....
T Consensus 48 ~nLp~~~~~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 102 (139)
T 1u6f_A 48 NYIPTTVDEVQLRQLFER-YG-PIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIA 102 (139)
T ss_dssp ESCSTTCCHHHHHHHHHH-HS-CEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHh-cC-CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHH
Confidence 335678999999999988 45 577787776554 32 249999987766655443
No 66
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=42.12 E-value=89 Score=22.10 Aligned_cols=66 Identities=15% Similarity=0.312 Sum_probs=41.4
Q ss_pred hhhhhhhccCCeEEEEEec---CCCHHHHHHHHHHHhCCceeeE--EEeeC-C-CCeeEEEEEcCCCCcHHHHHHhh
Q 031794 81 ESAMKKIEDNNTLVFIVDI---RADKRKIKDAVKKMYEIQTKKV--NTLIR-P-DGTKKAYVRLTPDYDALDVANKI 150 (153)
Q Consensus 81 Ekamk~~E~nNtlvF~Vd~---kAnK~qIKqAvekly~V~V~kV--NTli~-p-~g~KKAyV~L~~d~dAldvanki 150 (153)
+....++.. .+++|.|.- ..+|.+|+..+-++|+++..-| -.+.+ - +|.=..|... ||.+|.|.++
T Consensus 8 ~~~N~LL~R-ke~~~~v~H~~~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I---Yds~e~akk~ 80 (101)
T 1xn9_A 8 DKKNPLLNR-RELDFIVKYEGSTPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL---YEDADRMKQV 80 (101)
T ss_dssp EEEETTTTE-EEEEEEEECSSSCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE---CSCHHHHHHH
T ss_pred eeecCCcCc-EEEEEEEEcCCCCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE---ECCHHHHHhh
Confidence 334455554 577776653 4689999999999999875332 22222 1 3444555544 6778888764
No 67
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=41.97 E-value=23 Score=25.41 Aligned_cols=54 Identities=19% Similarity=0.296 Sum_probs=36.7
Q ss_pred eEEEE--EecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCee--EEEEEcCCCCcHHHH
Q 031794 92 TLVFI--VDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTK--KAYVRLTPDYDALDV 146 (153)
Q Consensus 92 tlvF~--Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~K--KAyV~L~~d~dAldv 146 (153)
..+|+ ++..++..+|++.++.+ +|....|..+..++|.- -|||.+....+|...
T Consensus 43 ~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~A 100 (126)
T 2hgm_A 43 GFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKA 100 (126)
T ss_dssp CEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHH
Confidence 33455 56689999999999885 54322777665554321 499999988776544
No 68
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=41.95 E-value=33 Score=23.06 Aligned_cols=54 Identities=7% Similarity=0.108 Sum_probs=36.2
Q ss_pred eEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCC-Ce--eEEEEEcCCCCcHHHHH
Q 031794 92 TLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPD-GT--KKAYVRLTPDYDALDVA 147 (153)
Q Consensus 92 tlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~-g~--KKAyV~L~~d~dAldva 147 (153)
-++--++...+..+|++.++. || .|..|..+..+. |. --|||.+....+|....
T Consensus 28 lfV~nLp~~~te~~L~~~F~~-~G-~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai 84 (109)
T 2rs2_A 28 MFIGGLSWQTTQEGLREYFGQ-FG-EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL 84 (109)
T ss_dssp EEEESCCTTCCHHHHHHHHTT-TS-CEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHc-cC-CeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHH
Confidence 334446678999999999877 55 477777665443 21 14999998766655444
No 69
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=41.81 E-value=41 Score=21.97 Aligned_cols=36 Identities=11% Similarity=0.195 Sum_probs=31.7
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEee
Q 031794 90 NNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLI 125 (153)
Q Consensus 90 nNtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli 125 (153)
..++.|.|+...+=.++|+.|+..+++.+.....+.
T Consensus 11 g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~ 46 (96)
T 3k9o_B 11 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 46 (96)
T ss_dssp CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEE
Confidence 468899999999999999999999999998886653
No 70
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=41.55 E-value=1e+02 Score=23.47 Aligned_cols=61 Identities=20% Similarity=0.290 Sum_probs=39.5
Q ss_pred hhccCCeEEEEEec----CCCHHHHHHHHHHHhCCceeeE--EEeeCC--CCeeEEEEEcCCCCcHHHHHHhh
Q 031794 86 KIEDNNTLVFIVDI----RADKRKIKDAVKKMYEIQTKKV--NTLIRP--DGTKKAYVRLTPDYDALDVANKI 150 (153)
Q Consensus 86 ~~E~nNtlvF~Vd~----kAnK~qIKqAvekly~V~V~kV--NTli~p--~g~KKAyV~L~~d~dAldvanki 150 (153)
++.. .+++|.|.- ..+|.||+..+-++|+++..-| -.+.+. +|.=..|..+ ||.+|.|.++
T Consensus 15 LL~R-kE~v~dV~Hpg~aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I---YDs~e~aKk~ 83 (149)
T 2xzm_P 15 LLSR-RQLSLDVLHPDSPTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV---YDNQQYLLKY 83 (149)
T ss_dssp TTTE-EEEEEEEECSSSCSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE---ESCHHHHHHH
T ss_pred CcCC-EEEEEEEEeCCCCCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE---eCCHHHHHhh
Confidence 4443 577886654 6799999999999999865433 333222 3444555544 5668888765
No 71
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=41.24 E-value=51 Score=20.62 Aligned_cols=35 Identities=11% Similarity=0.124 Sum_probs=30.9
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEe
Q 031794 90 NNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTL 124 (153)
Q Consensus 90 nNtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTl 124 (153)
..++.|.|+...+=.++|+.++..+|+.+.....+
T Consensus 14 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~ 48 (79)
T 3phx_B 14 GRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT 48 (79)
T ss_dssp SCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEE
T ss_pred CCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEE
Confidence 46888999999999999999999999998887554
No 72
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=40.88 E-value=46 Score=20.22 Aligned_cols=36 Identities=11% Similarity=0.192 Sum_probs=31.5
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEee
Q 031794 90 NNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLI 125 (153)
Q Consensus 90 nNtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli 125 (153)
..++.+.|+...+=.++|+.++..+++.+.....+.
T Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~ 45 (76)
T 1ndd_A 10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (76)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE
Confidence 357889999999999999999999999988877654
No 73
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=40.09 E-value=42 Score=25.21 Aligned_cols=52 Identities=8% Similarity=0.003 Sum_probs=37.9
Q ss_pred EEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHH
Q 031794 94 VFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVAN 148 (153)
Q Consensus 94 vF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~KKAyV~L~~d~dAldvan 148 (153)
+.-++...+..+|++.+.. ||..|..|..+-...| -|||.+....+|.....
T Consensus 156 V~nlp~~~t~~~l~~~f~~-~G~~i~~v~i~~~~~g--~afV~f~~~~~A~~Ai~ 207 (229)
T 2adc_A 156 LSNIPPSVSEEDLKVLFSS-NGGVVKGFKFFQKDRK--MALIQMGSVEEAVQALI 207 (229)
T ss_dssp EECCCTTCCHHHHHHHHHT-TSCCEEEEEECSSSTT--CEEEEESSHHHHHHHHH
T ss_pred EeCCCccCCHHHHHHHHHH-cCCCeeEEEEEECCCc--EEEEEECCHHHHHHHHH
Confidence 3445667899999999987 4878888876543445 69999987776655444
No 74
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.02 E-value=74 Score=20.54 Aligned_cols=52 Identities=15% Similarity=0.241 Sum_probs=35.3
Q ss_pred EEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCC-Cee--EEEEEcCCCCcHHHH
Q 031794 93 LVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPD-GTK--KAYVRLTPDYDALDV 146 (153)
Q Consensus 93 lvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~-g~K--KAyV~L~~d~dAldv 146 (153)
++--++...+..+|++.+.. || .|..|..+..+. |.- -|||.+....+|...
T Consensus 19 ~v~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A 73 (103)
T 2cqg_A 19 IVLGLPWKTTEQDLKEYFST-FG-EVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKV 73 (103)
T ss_dssp EEESCCSSCCHHHHHHHHGG-GS-CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHH
T ss_pred EEEcCCCcCCHHHHHHHHHh-cC-CeEEEEEEecCCCCCccceEEEEECCHHHHHHH
Confidence 33335668999999999977 45 477777766543 322 499999876665443
No 75
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=39.21 E-value=95 Score=23.29 Aligned_cols=46 Identities=15% Similarity=0.299 Sum_probs=38.0
Q ss_pred CeEEEEE----ecCCCHHHHHHHHHHHhCCceeeEEEeeCCCC---eeEEEEEcC
Q 031794 91 NTLVFIV----DIRADKRKIKDAVKKMYEIQTKKVNTLIRPDG---TKKAYVRLT 138 (153)
Q Consensus 91 NtlvF~V----d~kAnK~qIKqAvekly~V~V~kVNTli~p~g---~KKAyV~L~ 138 (153)
+-||.-. +...+-.+|+.+|.. || +|..++....|.. .==++|++.
T Consensus 4 kI~VgnL~~~~~~~tte~~Lk~~Fs~-fG-eV~~~~li~Dp~Tg~slGfgfVef~ 56 (136)
T 2j8a_A 4 EIVVYPAQDSTTTNIQDISIKNYFKK-YG-EISHFEAFNDPNSALPLHVYLIKYA 56 (136)
T ss_dssp EEEEEESSSSCCCCCCHHHHHHHHHT-TS-CCSEEEEEECTTTCCEEEEEEEECC
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHh-cC-CeEEEEEEecCCCCceeeEEEEEEC
Confidence 4677777 889999999999995 89 9999999998862 224889998
No 76
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=39.14 E-value=38 Score=23.74 Aligned_cols=49 Identities=24% Similarity=0.276 Sum_probs=35.4
Q ss_pred EEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHH
Q 031794 94 VFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDV 146 (153)
Q Consensus 94 vF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~KKAyV~L~~d~dAldv 146 (153)
+--++...+..+|++.+.. || .|..|.....+.| -|||.+....+|...
T Consensus 78 V~nl~~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~g--~afV~f~~~~~a~~A 126 (150)
T 2i2y_A 78 VGNLGNNGNKTELERAFGY-YG-PLRSVWVARNPPG--FAFVEFEDPRDAADA 126 (150)
T ss_dssp EESCCSCCSCHHHHHHHHH-HS-CEEEEEECSSSCS--EEEEEESSHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHh-hC-CEEEEEEeeCCCc--EEEEEECCHHHHHHH
Confidence 3345678899999999988 56 5777776655556 499999876665443
No 77
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.09 E-value=40 Score=22.32 Aligned_cols=52 Identities=15% Similarity=0.293 Sum_probs=34.5
Q ss_pred EEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCee--EEEEEcCCCCcHHHH
Q 031794 93 LVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTK--KAYVRLTPDYDALDV 146 (153)
Q Consensus 93 lvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~K--KAyV~L~~d~dAldv 146 (153)
++--++...+..+|++.++. || .|..|..+..+.|.- -|||.+....+|...
T Consensus 29 ~V~nlp~~~t~~~l~~~F~~-~G-~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A 82 (114)
T 1x5o_A 29 YISNLPLSMDEQELENMLKP-FG-QVISTRILRDSSGTSRGVGFARMESTEKCEAV 82 (114)
T ss_dssp EEESCCTTCCHHHHHHTTTT-TS-CEEEEEEEECSSSCEEEEEEEEESCHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHh-cC-CEEEEEEEECCCCCcceEEEEEECCHHHHHHH
Confidence 33445678899999888876 44 477777766555432 389999866555443
No 78
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=38.54 E-value=44 Score=21.00 Aligned_cols=36 Identities=11% Similarity=0.219 Sum_probs=31.5
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEee
Q 031794 90 NNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLI 125 (153)
Q Consensus 90 nNtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli 125 (153)
..++.+.|+...+=.++|+.++..+++.+.....+.
T Consensus 13 g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~ 48 (85)
T 3n3k_B 13 GRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 48 (85)
T ss_dssp GCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE
Confidence 357889999999999999999999999998876554
No 79
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.45 E-value=49 Score=21.06 Aligned_cols=44 Identities=11% Similarity=0.313 Sum_probs=31.4
Q ss_pred EecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHH
Q 031794 97 VDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVA 147 (153)
Q Consensus 97 Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~KKAyV~L~~d~dAldva 147 (153)
++...+..+|++.++. || .|..|... .| -|||.+....+|....
T Consensus 18 Lp~~~t~~~l~~~F~~-~G-~v~~v~~~---~~--~afV~f~~~~~a~~A~ 61 (92)
T 2dgt_A 18 ISPTCTNQELRAKFEE-YG-PVIECDIV---KD--YAFVHMERAEDAVEAI 61 (92)
T ss_dssp CCSSCCHHHHHHHHHT-TS-CCCEEEEC---SS--EEEEEESCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHh-cC-CeEEEEEE---CC--EEEEEECCHHHHHHHH
Confidence 4567999999999988 55 46666554 33 6999998766655443
No 80
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=38.40 E-value=27 Score=23.40 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=40.0
Q ss_pred eEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCC-Cee--EEEEEcCCCCcHHHHH
Q 031794 92 TLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPD-GTK--KAYVRLTPDYDALDVA 147 (153)
Q Consensus 92 tlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~-g~K--KAyV~L~~d~dAldva 147 (153)
-++--.+...+..+|++.++.+=.+.+..|.....+. |.- =|||.+....+|....
T Consensus 12 lfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai 70 (95)
T 2lkz_A 12 IILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLL 70 (95)
T ss_dssp EEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHH
T ss_pred EEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHH
Confidence 3445677899999999999885456888888765443 211 3999999877665543
No 81
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.25 E-value=80 Score=20.44 Aligned_cols=48 Identities=8% Similarity=0.141 Sum_probs=34.9
Q ss_pred EecCCCHHHHHHHHHHHhCCceeeEEEeeCCC-Ce--eEEEEEcCCCCcHHHH
Q 031794 97 VDIRADKRKIKDAVKKMYEIQTKKVNTLIRPD-GT--KKAYVRLTPDYDALDV 146 (153)
Q Consensus 97 Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~-g~--KKAyV~L~~d~dAldv 146 (153)
++...+..+|++.++. || .|..|..+..+. |. --|||.+....+|...
T Consensus 24 lp~~~t~~~l~~~F~~-~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a 74 (105)
T 2dh8_A 24 LDWSTTQETLRSYFSQ-YG-EVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 74 (105)
T ss_dssp CCTTCCHHHHHHHHHT-TS-CEEEEEEEECSSSCCEEEEEEEEESSTTHHHHH
T ss_pred CCCCCCHHHHHHHHHh-cC-CeEEEEEeeCCCCCCcceEEEEEECCHHHHHHH
Confidence 4668999999999988 55 677887776543 22 2599999987775544
No 82
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=37.83 E-value=78 Score=21.50 Aligned_cols=53 Identities=9% Similarity=0.115 Sum_probs=36.9
Q ss_pred EEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCC-CCe--eEEEEEcCCCCcHHHHH
Q 031794 93 LVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRP-DGT--KKAYVRLTPDYDALDVA 147 (153)
Q Consensus 93 lvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p-~g~--KKAyV~L~~d~dAldva 147 (153)
++--++...+..+|++.++. || .|..|..+..+ .|. --|||.+....+|....
T Consensus 6 ~v~nlp~~~~~~~l~~~f~~-~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~ 61 (167)
T 1fxl_A 6 IVNYLPQNMTQEEFRSLFGS-IG-EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 61 (167)
T ss_dssp EEESCCTTCCHHHHHHHHHT-TS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred EEcCCCCCCCHHHHHHHHHh-cC-CeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHH
Confidence 34446778999999999987 55 57778777665 332 24999998766655443
No 83
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=37.82 E-value=98 Score=21.30 Aligned_cols=57 Identities=9% Similarity=0.059 Sum_probs=40.4
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCC-CCee--EEEEEcCCCCcHHHHHHh
Q 031794 91 NTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRP-DGTK--KAYVRLTPDYDALDVANK 149 (153)
Q Consensus 91 NtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p-~g~K--KAyV~L~~d~dAldvank 149 (153)
.-++--++...+..+|++.++. || .|..|..+..+ .|.- -|||++....+|......
T Consensus 96 ~l~v~nlp~~~t~~~l~~~f~~-~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (172)
T 2g4b_A 96 KLFIGGLPNYLNDDQVKELLTS-FG-PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 155 (172)
T ss_dssp CEEEECCCTTCCHHHHHHHHHT-TS-CEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHH
T ss_pred EEEEEcCCCcCCHHHHHHHHHh-cC-CceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 4455556778999999999987 55 56777776664 3433 399999988877665443
No 84
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=37.76 E-value=75 Score=19.94 Aligned_cols=49 Identities=8% Similarity=0.027 Sum_probs=32.5
Q ss_pred EecCCCHHHHHHHHHHHhCCceeeEEEeeCCCC-eeEEEEEcCCCCcHHHHH
Q 031794 97 VDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDG-TKKAYVRLTPDYDALDVA 147 (153)
Q Consensus 97 Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g-~KKAyV~L~~d~dAldva 147 (153)
++...+..+|++.++. || .|..|......+. .--|||.+....+|....
T Consensus 16 lp~~~t~~~l~~~f~~-~G-~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~ 65 (92)
T 2dgv_A 16 LPFDFTWKMLKDKFNE-CG-HVLYADIKMENGKSKGCGVVKFESPEVAERAC 65 (92)
T ss_dssp CCTTCCHHHHHHHHHT-TS-CEEEEEEEESSSCEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHh-cC-CEEEEEEEccCCCcceEEEEEECCHHHHHHHH
Confidence 5668999999999988 44 5666665543221 224999998766655443
No 85
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=37.69 E-value=66 Score=20.69 Aligned_cols=36 Identities=19% Similarity=0.337 Sum_probs=31.6
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEee
Q 031794 90 NNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLI 125 (153)
Q Consensus 90 nNtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli 125 (153)
..++.|.|+...+=.++|+.|+..+++.+.....+.
T Consensus 15 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~ 50 (90)
T 4dwf_A 15 SQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY 50 (90)
T ss_dssp CCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 468899999999999999999999999998876543
No 86
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=37.60 E-value=35 Score=22.25 Aligned_cols=46 Identities=13% Similarity=0.166 Sum_probs=33.9
Q ss_pred EecCCCHHHHHHHHHHHhCCceeeEEEeeCCC-Ce--eEEEEEcCCCCcHHH
Q 031794 97 VDIRADKRKIKDAVKKMYEIQTKKVNTLIRPD-GT--KKAYVRLTPDYDALD 145 (153)
Q Consensus 97 Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~-g~--KKAyV~L~~d~dAld 145 (153)
++...+..+|++.++.+ + |..|..+..+. |. --|||.+....+|..
T Consensus 23 Lp~~~t~~~l~~~F~~~-g--i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~ 71 (103)
T 2dng_A 23 LPFNTVQGDIDAIFKDL-S--IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKE 71 (103)
T ss_dssp CCTTCCHHHHHHHTTTS-C--EEEEEEEECSSSCSEEEEEEEEESSHHHHHH
T ss_pred CCCCCCHHHHHHHHHhC-C--ceEEEEeecCCCCccceEEEEEECCHHHHHH
Confidence 56689999999999886 6 88888876654 22 159999986655443
No 87
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=37.34 E-value=71 Score=19.56 Aligned_cols=54 Identities=17% Similarity=0.295 Sum_probs=36.5
Q ss_pred EEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCC-Ce--eEEEEEcCCCCcHHHHHH
Q 031794 93 LVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPD-GT--KKAYVRLTPDYDALDVAN 148 (153)
Q Consensus 93 lvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~-g~--KKAyV~L~~d~dAldvan 148 (153)
++--++...+..+|++.+.. || .|..|.....+. |. --|||.+....+|.....
T Consensus 5 ~V~nlp~~~t~~~l~~~f~~-~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~ 61 (83)
T 3md1_A 5 FVGDLNVNVDDETLRNAFKD-FP-SYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMD 61 (83)
T ss_dssp EEECCCTTCCHHHHHHHHTT-ST-TEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHH
Confidence 44456678899999998876 55 677777665543 32 249999987766655433
No 88
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=36.54 E-value=1.1e+02 Score=21.55 Aligned_cols=52 Identities=10% Similarity=0.043 Sum_probs=37.0
Q ss_pred EEEecCCCHHHHHHHHHHHhCCceeeEEEeeCC-CC--eeEEEEEcCCCCcHHHHHH
Q 031794 95 FIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRP-DG--TKKAYVRLTPDYDALDVAN 148 (153)
Q Consensus 95 F~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p-~g--~KKAyV~L~~d~dAldvan 148 (153)
--++...+..+|++.++. || .|..|..+..+ .| .--|||.+....+|.....
T Consensus 120 ~nl~~~~~~~~l~~~f~~-~G-~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 174 (198)
T 2yh0_A 120 GGLPNYLNDDQVKELLTS-FG-PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 174 (198)
T ss_dssp ECCCTTCCHHHHHHHHHT-BS-CEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHH-cC-CccEEEEeecCCCCCcceEEEEEECCHHHHHHHHH
Confidence 334567999999999987 55 56777777664 33 2249999998877765544
No 89
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=36.43 E-value=76 Score=19.61 Aligned_cols=50 Identities=8% Similarity=0.058 Sum_probs=35.4
Q ss_pred EEEEEecCCCHHHHHHHHHHHh---CC------ceeeEEEeeCCCCeeEEEEEcCCCCcHHH
Q 031794 93 LVFIVDIRADKRKIKDAVKKMY---EI------QTKKVNTLIRPDGTKKAYVRLTPDYDALD 145 (153)
Q Consensus 93 lvF~Vd~kAnK~qIKqAvekly---~V------~V~kVNTli~p~g~KKAyV~L~~d~dAld 145 (153)
++--++..++..+|++.++... |+ .|..|.+. ...| -|||.+....+|..
T Consensus 10 ~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~-~~kg--~afV~f~~~~~a~~ 68 (87)
T 2hzc_A 10 YVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKN--FAFLEFRSVDETTQ 68 (87)
T ss_dssp EEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC-SSSS--EEEEEESSHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec-CCCc--EEEEEcCCHHHHHH
Confidence 4444667899999999998863 65 67777765 3345 49999986655443
No 90
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=36.08 E-value=59 Score=20.33 Aligned_cols=35 Identities=11% Similarity=0.191 Sum_probs=31.1
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEe
Q 031794 90 NNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTL 124 (153)
Q Consensus 90 nNtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTl 124 (153)
..++.+.|+...+=.++|+.++..+++.+.....+
T Consensus 13 g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~ 47 (85)
T 3mtn_B 13 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 47 (85)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEE
Confidence 36889999999999999999999999999887655
No 91
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=35.61 E-value=56 Score=21.20 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=34.0
Q ss_pred EEecCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHHH
Q 031794 96 IVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPD-G--TKKAYVRLTPDYDALDVA 147 (153)
Q Consensus 96 ~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~-g--~KKAyV~L~~d~dAldva 147 (153)
-++...+..+|++.++.+ | .|..|..+..+. | .--|||.+....+|....
T Consensus 20 nlp~~~t~~~l~~~F~~~-G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~ 72 (106)
T 2dgp_A 20 QIPRNLDEKDLKPLFEEF-G-KIYELTVLKDRFTGMHKGCAFLTYCERESALKAQ 72 (106)
T ss_dssp SCCTTCCHHHHHHHHHHH-S-CCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHhc-C-CeeEEEEEecCCCCCcceEEEEEECCHHHHHHHH
Confidence 345689999999999985 4 466776655433 1 124999998766655443
No 92
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.38 E-value=89 Score=20.14 Aligned_cols=54 Identities=9% Similarity=0.154 Sum_probs=35.5
Q ss_pred CeEEEE--EecCCCHHHHHHHHHHHhCCceeeEEEeeCCCC-eeEEEEEcCCCCcHHHH
Q 031794 91 NTLVFI--VDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDG-TKKAYVRLTPDYDALDV 146 (153)
Q Consensus 91 NtlvF~--Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g-~KKAyV~L~~d~dAldv 146 (153)
+.-+|+ ++...+..+|++.++.+ | .|..|..+..+++ .--|||.+....+|...
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~-G-~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A 71 (103)
T 2cqi_A 15 PRTLYVGNLSRDVTEVLILQLFSQI-G-PCKSCKMITEHTSNDPYCFVEFYEHRDAAAA 71 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHH-S-CEEEEEEECCCCSSCCEEEEEESSHHHHHHH
T ss_pred CCEEEEeCCCccCCHHHHHHHHHhc-C-CEeEEEEEecCCCCCCEEEEEECCHHHHHHH
Confidence 344455 45679999999999874 5 4667766554332 22599999876665443
No 93
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=35.28 E-value=44 Score=24.03 Aligned_cols=51 Identities=8% Similarity=-0.014 Sum_probs=36.4
Q ss_pred EEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHH
Q 031794 95 FIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVAN 148 (153)
Q Consensus 95 F~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~KKAyV~L~~d~dAldvan 148 (153)
.-++...+..+|++.++.+ |..|..|..+-...| -|||.+....+|.....
T Consensus 126 ~nl~~~~~~~~l~~~f~~~-G~~v~~v~i~~~~~g--~afV~f~~~~~A~~A~~ 176 (198)
T 1qm9_A 126 SNIPPSVSEEDLKVLFSSN-GGVVKGFKFFQKDRK--MALIQMGSVEEAVQALI 176 (198)
T ss_dssp CCCCTTCCHHHHHHHHHHT-TSCCCEEEESSTTSS--CEEEECSSHHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHHc-CCCceEEEEEeCCCc--EEEEEeCCHHHHHHHHH
Confidence 3445678999999999884 777878776443344 69999987766655433
No 94
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=34.69 E-value=79 Score=23.62 Aligned_cols=54 Identities=11% Similarity=-0.007 Sum_probs=36.7
Q ss_pred eEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCee--EEEEEcCCCCcHHHHH
Q 031794 92 TLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTK--KAYVRLTPDYDALDVA 147 (153)
Q Consensus 92 tlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~K--KAyV~L~~d~dAldva 147 (153)
-+|--++..++..+|++.+.. || .|..|......+|.- =|||.+....+|....
T Consensus 112 l~V~nLp~~~t~~~L~~~F~~-~G-~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~ 167 (193)
T 2voo_A 112 VYIKGFPTDATLDDIKEWLED-KG-QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFV 167 (193)
T ss_dssp EEEECCCTTCCHHHHHHHHTT-SC-CEEEEEEEECTTCCEEEEEEEEESSHHHHHHHH
T ss_pred EEecCCCCcCCHHHHHHHHhc-CC-CEEEEEEEECCCCCcccEEEEEECCHHHHHHHH
Confidence 344445678999999998887 56 377777665444422 4999998776655543
No 95
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.62 E-value=59 Score=21.05 Aligned_cols=53 Identities=11% Similarity=0.023 Sum_probs=35.5
Q ss_pred EEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCC-Cee--EEEEEcCCCCcHHHHHH
Q 031794 94 VFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPD-GTK--KAYVRLTPDYDALDVAN 148 (153)
Q Consensus 94 vF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~-g~K--KAyV~L~~d~dAldvan 148 (153)
+--++..++..+|++.++. || .|..|..+..+. |.- -|||++....+|.....
T Consensus 20 V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 75 (105)
T 1x5u_A 20 VGGLDEKVSEPLLWELFLQ-AG-PVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 75 (105)
T ss_dssp EECCCTTCCHHHHHHHHHT-TS-CEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHH
Confidence 3335668999999999988 45 577777665442 211 49999987766554433
No 96
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=34.49 E-value=78 Score=20.22 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=31.1
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEe
Q 031794 90 NNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTL 124 (153)
Q Consensus 90 nNtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTl 124 (153)
..++.|.|+...+=.++|+.++..+|+.+.....+
T Consensus 27 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi 61 (88)
T 4eew_A 27 SQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLI 61 (88)
T ss_dssp SCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE
Confidence 46889999999999999999999999999887554
No 97
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=34.45 E-value=56 Score=20.70 Aligned_cols=35 Identities=11% Similarity=0.204 Sum_probs=30.7
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEe
Q 031794 90 NNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTL 124 (153)
Q Consensus 90 nNtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTl 124 (153)
..++.|.|+...+=.++|+.++..+++.+.....+
T Consensus 22 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~ 56 (88)
T 3dbh_I 22 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI 56 (88)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEE
Confidence 46889999999999999999999999998777544
No 98
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=34.41 E-value=59 Score=21.86 Aligned_cols=47 Identities=13% Similarity=0.064 Sum_probs=32.3
Q ss_pred EEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHH
Q 031794 95 FIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDV 146 (153)
Q Consensus 95 F~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~KKAyV~L~~d~dAldv 146 (153)
-.++...+..+|++.++. || .|..|... ...|+ |||.+....+|...
T Consensus 16 ~nLp~~~te~~L~~~F~~-~G-~i~~v~i~-~~~g~--afV~f~~~~~A~~A 62 (111)
T 1whx_A 16 KNLPAGTLAAEIQETFSR-FG-SLGRVLLP-EGGIT--AIVEFLEPLEARKA 62 (111)
T ss_dssp ESCCTTCCHHHHHHHHHT-TS-CEEEEECC-SSSSC--EEEEESCHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHh-cC-CEEEEEEe-CCCCE--EEEEeCCHHHHHHH
Confidence 335678999999999987 56 45555533 33454 99999876665443
No 99
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=34.37 E-value=52 Score=21.48 Aligned_cols=36 Identities=11% Similarity=0.192 Sum_probs=31.3
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEee
Q 031794 90 NNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLI 125 (153)
Q Consensus 90 nNtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli 125 (153)
..++.+.|+...+=.++|+.++..+|+.+.....+.
T Consensus 10 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 45 (88)
T 4fbj_B 10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (88)
T ss_dssp CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEE
Confidence 468899999999999999999999999988776543
No 100
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=34.29 E-value=45 Score=25.68 Aligned_cols=50 Identities=18% Similarity=0.177 Sum_probs=33.9
Q ss_pred EecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCe--eEEEEEcCCCCcHHHHH
Q 031794 97 VDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGT--KKAYVRLTPDYDALDVA 147 (153)
Q Consensus 97 Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~--KKAyV~L~~d~dAldva 147 (153)
++...+..+|++.+.. ||+.|..|..+..+.|. --|||.+....+|....
T Consensus 125 lp~~~t~~~l~~~f~~-~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~ 176 (292)
T 2ghp_A 125 FPPSYTQRNIRDLLQD-INVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCV 176 (292)
T ss_dssp CCTTCCHHHHHHHHHH-TTCCCCEEECC-------CCEEEEECSSHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH-hCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHH
Confidence 4568999999999988 78788888776544331 23999998776655443
No 101
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=34.20 E-value=59 Score=20.65 Aligned_cols=36 Identities=6% Similarity=0.117 Sum_probs=31.3
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEee
Q 031794 90 NNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLI 125 (153)
Q Consensus 90 nNtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli 125 (153)
..++.+.|+...+=.++|+.++...++.+.....+.
T Consensus 17 g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~ 52 (87)
T 1wh3_A 17 GGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEF 52 (87)
T ss_dssp TEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEE
T ss_pred CCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEE
Confidence 357889999999999999999999999988877654
No 102
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=34.19 E-value=51 Score=21.97 Aligned_cols=36 Identities=11% Similarity=0.204 Sum_probs=31.3
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEee
Q 031794 90 NNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLI 125 (153)
Q Consensus 90 nNtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli 125 (153)
..++.|.|+...+=.++|+.|+..+++.+.....+.
T Consensus 32 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 67 (98)
T 4hcn_B 32 GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 67 (98)
T ss_dssp CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEE
Confidence 468899999999999999999999999998876543
No 103
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=34.05 E-value=62 Score=24.85 Aligned_cols=52 Identities=12% Similarity=0.226 Sum_probs=38.2
Q ss_pred EEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCee--EEEEEcCCCCcHHHHHHh
Q 031794 96 IVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTK--KAYVRLTPDYDALDVANK 149 (153)
Q Consensus 96 ~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~K--KAyV~L~~d~dAldvank 149 (153)
-++...+..+|++.+.. || .|..|..+..+.|.. -|||.+....+|......
T Consensus 103 nl~~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~ 156 (261)
T 3sde_A 103 NLSPVVSNELLEQAFSQ-FG-PVEKAVVVVDDRGRATGKGFVEFAAKPPARKALER 156 (261)
T ss_dssp SCCTTCCHHHHHHHHGG-GS-CEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHh-cC-CeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 35567899999999976 67 788888777666643 489999877766555444
No 104
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=33.93 E-value=63 Score=21.01 Aligned_cols=36 Identities=8% Similarity=0.167 Sum_probs=31.5
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEee
Q 031794 90 NNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLI 125 (153)
Q Consensus 90 nNtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli 125 (153)
..++.+.|+...+=.++|+.|+..+|+.+.....+.
T Consensus 27 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 62 (91)
T 3v6c_B 27 GTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 62 (91)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEE
Confidence 468899999999999999999999999998876553
No 105
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=33.43 E-value=73 Score=19.50 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=31.3
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEee
Q 031794 90 NNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLI 125 (153)
Q Consensus 90 nNtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli 125 (153)
..++.+.|+...+=.++|+.++...|+.+.....+.
T Consensus 13 g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~ 48 (77)
T 2bwf_A 13 QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIY 48 (77)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEE
Confidence 357889999999999999999999999988877653
No 106
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.16 E-value=69 Score=21.25 Aligned_cols=52 Identities=8% Similarity=0.128 Sum_probs=34.1
Q ss_pred EEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCC-Ce--eEEEEEcCCCCcHHHH
Q 031794 93 LVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPD-GT--KKAYVRLTPDYDALDV 146 (153)
Q Consensus 93 lvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~-g~--KKAyV~L~~d~dAldv 146 (153)
++--++...+..+|++.++. || .|..|..+..+. |. --|||.+....+|...
T Consensus 21 ~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A 75 (116)
T 2cqd_A 21 FVGGLPYHTTDASLRKYFEG-FG-DIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 75 (116)
T ss_dssp EEECCCSSCCHHHHHHHHHT-TS-CEEEEEESCCSSSCCCCSEEEEEESSHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHh-CC-CeeEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 33445668999999999987 45 366776655432 11 1599999866555443
No 107
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=32.85 E-value=61 Score=23.23 Aligned_cols=49 Identities=16% Similarity=0.133 Sum_probs=34.5
Q ss_pred EEEEec-CCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHH
Q 031794 94 VFIVDI-RADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDV 146 (153)
Q Consensus 94 vF~Vd~-kAnK~qIKqAvekly~V~V~kVNTli~p~g~KKAyV~L~~d~dAldv 146 (153)
+--++. .++..+|++.++. ||- |..|..+..+.|+ |||.+....+|...
T Consensus 8 v~nlp~~~~~~~~l~~~F~~-~G~-i~~v~i~~~~~g~--afV~f~~~~~a~~A 57 (198)
T 1qm9_A 8 VSNLNPERVTPQSLFILFGV-YGD-VQRVKILFNKKEN--ALVQMADGNQAQLA 57 (198)
T ss_dssp EECCCSSSCCHHHHHHHHHT-TCC-CSEEECSTTCSSC--CEEECTTTHHHHHH
T ss_pred EeCCCcccCCHHHHHHHHHh-cCC-EEEEEEEeCCCCE--EEEEECCHHHHHHH
Confidence 333556 7899999999987 553 6777766555564 99999877665443
No 108
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=32.82 E-value=76 Score=23.74 Aligned_cols=52 Identities=15% Similarity=0.211 Sum_probs=36.5
Q ss_pred CeEEEEE--ec-CCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHH
Q 031794 91 NTLVFIV--DI-RADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDV 146 (153)
Q Consensus 91 NtlvF~V--d~-kAnK~qIKqAvekly~V~V~kVNTli~p~g~KKAyV~L~~d~dAldv 146 (153)
+.-+|+- +. .++..+|++.++. ||- |..|..+..+.|+ |||.+....+|...
T Consensus 34 ~~~l~V~nLp~~~~te~~L~~~F~~-~G~-i~~v~i~~~~~g~--afV~F~~~~~A~~A 88 (229)
T 2adc_A 34 NSVLLVSNLNPERVTPQSLFILFGV-YGD-VQRVKILFNKKEN--ALVQMADGNQAQLA 88 (229)
T ss_dssp CSEEEEESCCTTTCCHHHHHHHHHH-HTC-EEEEEECCTTSCC--EEEEESCHHHHHHH
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHh-CCC-eEEEEEEECCCCE--EEEEECCHHHHHHH
Confidence 3344554 45 7899999999987 453 7777777665565 99999876665443
No 109
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=32.68 E-value=1.1e+02 Score=21.47 Aligned_cols=52 Identities=8% Similarity=0.031 Sum_probs=37.5
Q ss_pred eEEEEEecCCCHHHHHHHHHHH---hCC------ceeeEEEeeCCCCeeEEEEEcCCCCcHHHH
Q 031794 92 TLVFIVDIRADKRKIKDAVKKM---YEI------QTKKVNTLIRPDGTKKAYVRLTPDYDALDV 146 (153)
Q Consensus 92 tlvF~Vd~kAnK~qIKqAvekl---y~V------~V~kVNTli~p~g~KKAyV~L~~d~dAldv 146 (153)
-++--++..++..+|++.++.. .|+ .|..+.+. ...|+ |||.+....+|...
T Consensus 7 l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-~~~g~--afV~F~~~~~A~~A 67 (198)
T 2yh0_A 7 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNF--AFLEFRSVDETTQA 67 (198)
T ss_dssp EEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE-TTTTE--EEEEESCSHHHHHH
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec-CCCCE--EEEEeCCHHHHHHH
Confidence 3444567789999999999986 265 67777763 44564 99999987776544
No 110
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.20 E-value=68 Score=19.87 Aligned_cols=36 Identities=11% Similarity=0.110 Sum_probs=31.0
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEee
Q 031794 90 NNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLI 125 (153)
Q Consensus 90 nNtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli 125 (153)
..++.+.|+...+=.++|+.++..+|+.+.....+.
T Consensus 17 g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~ 52 (81)
T 2dzi_A 17 GRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLF 52 (81)
T ss_dssp SCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEE
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE
Confidence 357889999999999999999999999887776654
No 111
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=31.97 E-value=84 Score=20.95 Aligned_cols=52 Identities=6% Similarity=0.194 Sum_probs=35.1
Q ss_pred EEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCC-Ce--eEEEEEcCCCCcHHHHH
Q 031794 94 VFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPD-GT--KKAYVRLTPDYDALDVA 147 (153)
Q Consensus 94 vF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~-g~--KKAyV~L~~d~dAldva 147 (153)
+--++...+..+|++.++. || .|..|.....+. |. --|||.+....+|....
T Consensus 31 V~nLp~~~te~~l~~~F~~-~G-~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai 85 (108)
T 2jrs_A 31 VGSLHFNITEDMLRGIFEP-FG-RIESIQLMMDSETGRSKGYGFITFSDSECAKKAL 85 (108)
T ss_dssp EECCCSSCCHHHHHHHHTT-TS-CEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEEcCCCCccceEEEEEECCHHHHHHHH
Confidence 3344567999999999876 55 577777765543 22 25999998776655443
No 112
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.64 E-value=22 Score=22.62 Aligned_cols=48 Identities=15% Similarity=0.073 Sum_probs=33.5
Q ss_pred EEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHH
Q 031794 93 LVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDAL 144 (153)
Q Consensus 93 lvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~KKAyV~L~~d~dAl 144 (153)
++--++...+..+|++.+.. || .|..|..+..+.|+ |||.+....+|.
T Consensus 9 ~V~nLp~~~te~~l~~~F~~-~G-~i~~v~i~~~~~g~--afV~f~~~~~a~ 56 (88)
T 1wf0_A 9 FVGRCTGDMTEDELREFFSQ-YG-DVMDVFIPKPFRAF--AFVTFADDQIAQ 56 (88)
T ss_dssp EEESCCSSSCHHHHHHHSTT-TS-CCCEEECCSSCCSC--CEEECSCHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHH-cC-CeeEEEEecCCCCE--EEEEECCHHHHH
Confidence 34446678999999998876 45 36677765544564 999998766553
No 113
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=31.47 E-value=99 Score=22.15 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=38.3
Q ss_pred eEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHHHH
Q 031794 92 TLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPD-G--TKKAYVRLTPDYDALDVAN 148 (153)
Q Consensus 92 tlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~-g--~KKAyV~L~~d~dAldvan 148 (153)
-++--++...+..+|++.++. || .|..|..+..+. | .--|||.+....+|.....
T Consensus 128 l~v~nlp~~~t~~~l~~~f~~-~G-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 185 (216)
T 2qfj_A 128 IYVASVHQDLSDDDIKSVFEA-FG-KIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVS 185 (216)
T ss_dssp EEEECCCTTCCHHHHHHHHTT-SS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred EEEeCCCCcCCHHHHHHHHhc-cC-CeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 334446668999999999987 56 677887776542 2 2259999987766655443
No 114
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=31.33 E-value=13 Score=27.04 Aligned_cols=47 Identities=21% Similarity=0.280 Sum_probs=33.5
Q ss_pred EEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCee--EEEEEcCCCCcHHH
Q 031794 96 IVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTK--KAYVRLTPDYDALD 145 (153)
Q Consensus 96 ~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~K--KAyV~L~~d~dAld 145 (153)
-+...++..+|++.++. |+ +..|..+..++|.- -|||.+....||..
T Consensus 53 nLp~~~te~dL~~~F~~-~G--i~~v~i~~d~~g~srGfaFV~F~~~e~A~~ 101 (139)
T 2hgn_A 53 GLPYKATENDIYNFFSP-LN--PVRVHIEIGPDGRVTGEADVEFATHEEAVA 101 (139)
T ss_dssp SCCTTCCHHHHHHHHCS-CC--CSEEECCCSSSSCSSCCCEEECSHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHh-cC--CeEEEEEECCCCCCceEEEEEeCCHHHHHH
Confidence 35668999999999987 67 34777776655432 39999986655443
No 115
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.91 E-value=1e+02 Score=19.76 Aligned_cols=51 Identities=10% Similarity=0.139 Sum_probs=35.2
Q ss_pred eEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHH
Q 031794 92 TLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVA 147 (153)
Q Consensus 92 tlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~KKAyV~L~~d~dAldva 147 (153)
+-+|+-....+..+|++.++. || .|..|.. ....|+ |||.+....+|....
T Consensus 16 ~~l~V~n~~~t~~~l~~~F~~-~G-~i~~v~i-~~~~g~--afV~f~~~~~a~~Ai 66 (97)
T 1x5p_A 16 NTLYVYGEDMTPTLLRGAFSP-FG-NIIDLSM-DPPRNC--AFVTYEKMESADQAV 66 (97)
T ss_dssp SEEEEECSSCCHHHHHHHHTT-TS-CEEEEEE-ETTTTE--EEEEESSHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHhh-CC-CEEEEEe-cCCCCE--EEEEECCHHHHHHHH
Confidence 445666778999999998877 45 4666655 355564 999998766655443
No 116
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.84 E-value=77 Score=22.03 Aligned_cols=52 Identities=10% Similarity=0.146 Sum_probs=36.0
Q ss_pred eEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHH
Q 031794 92 TLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVAN 148 (153)
Q Consensus 92 tlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~KKAyV~L~~d~dAldvan 148 (153)
-||=-++..++..++++.++. || +|..|..+. ..| =|||.+....+|.+...
T Consensus 19 LfV~nLp~~vte~dL~~lF~~-fG-~V~~v~i~~-~kG--faFVeF~~~~~A~~Ai~ 70 (105)
T 1sjq_A 19 IHIRKLPIDVTEGEVISLGLP-FG-KVTNLLMLK-GKN--QAFIEMNTEEAANTMVN 70 (105)
T ss_dssp EEECSCCTTSCHHHHHHHHHH-HC-CEEEEEEET-TTT--EEEEEESSHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CEEEEEEEc-CCC--EEEEEECCHHHHHHHHH
Confidence 344445667899999999987 67 577777543 335 49999987766655443
No 117
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.01 E-value=63 Score=20.75 Aligned_cols=50 Identities=8% Similarity=0.146 Sum_probs=33.8
Q ss_pred EEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHH
Q 031794 94 VFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPD-G--TKKAYVRLTPDYDALD 145 (153)
Q Consensus 94 vF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~-g--~KKAyV~L~~d~dAld 145 (153)
+--++...+..+|++.++. || .|..|..+..+. | .--|||.+....+|..
T Consensus 15 V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ 67 (99)
T 2dgs_A 15 VGGIPHNCGETELREYFKK-FG-VVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 67 (99)
T ss_dssp EESCCSSCCHHHHHHHHSS-SS-CEEEEEECCCTTTCSCCSEEEEEESSHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEeCCCCCCCCceEEEEECCHHHHHH
Confidence 3335668999999999987 55 577777665432 2 1249999986655443
No 118
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.67 E-value=1.1e+02 Score=19.63 Aligned_cols=54 Identities=13% Similarity=0.172 Sum_probs=36.5
Q ss_pred eEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHHH
Q 031794 92 TLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPD-G--TKKAYVRLTPDYDALDVA 147 (153)
Q Consensus 92 tlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~-g--~KKAyV~L~~d~dAldva 147 (153)
-++--++...+..+|++.++. || .|..|..+..+. | .--|||.+....+|....
T Consensus 11 l~V~nlp~~~~~~~l~~~f~~-~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 67 (104)
T 1p1t_A 11 VFVGNIPYEATEEQLKDIFSE-VG-PVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 67 (104)
T ss_dssp EEEESCCTTSCHHHHHHHHHT-TS-CCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHH
T ss_pred EEEeCCCCcCCHHHHHHHHHh-cC-CeeEEEEEeCCCCCccceEEEEEECCHHHHHHHH
Confidence 344446678999999999987 55 466777665542 2 235999998776655443
No 119
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=29.48 E-value=81 Score=20.75 Aligned_cols=36 Identities=11% Similarity=0.195 Sum_probs=31.1
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEee
Q 031794 90 NNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLI 125 (153)
Q Consensus 90 nNtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli 125 (153)
..++.+.|+...+=.++|+.|+..+|+.+.....+.
T Consensus 10 g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~ 45 (98)
T 1yx5_B 10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (98)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEE
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE
Confidence 357889999999999999999999999988777654
No 120
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=29.27 E-value=93 Score=21.26 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=36.9
Q ss_pred eEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCC-CCe--eEEEEEcCCCCcHHHHHH
Q 031794 92 TLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRP-DGT--KKAYVRLTPDYDALDVAN 148 (153)
Q Consensus 92 tlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p-~g~--KKAyV~L~~d~dAldvan 148 (153)
-++--++...+..+|++.++. || .|..|.....+ +|. --|||.+....+|.....
T Consensus 92 l~v~nl~~~~t~~~l~~~f~~-~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 149 (168)
T 1b7f_A 92 LYVTNLPRTITDDQLDTIFGK-YG-SIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 149 (168)
T ss_dssp EEEESCCTTCCHHHHHHHHTS-SS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHhhhc-CC-cEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHH
Confidence 344445667999999999877 45 56777766554 332 249999987766655443
No 121
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=29.11 E-value=99 Score=19.72 Aligned_cols=52 Identities=10% Similarity=0.099 Sum_probs=34.6
Q ss_pred eEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHH
Q 031794 92 TLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVAN 148 (153)
Q Consensus 92 tlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~KKAyV~L~~d~dAldvan 148 (153)
-++--++...+..+|++.++. || .|..|.... ..| -|||.+....+|.....
T Consensus 20 l~V~nlp~~~t~~~l~~~F~~-~G-~v~~v~~~~-~~g--~afV~f~~~~~A~~A~~ 71 (97)
T 1why_A 20 LWVGGLGPNTSLAALAREFDR-FG-SIRTIDHVK-GDS--FAYIQYESLDAAQAACA 71 (97)
T ss_dssp EEEECCCSSCCHHHHHHHHHT-TS-CEEEEEECS-SSC--CEEEEESSHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEeC-CCC--EEEEEECCHHHHHHHHH
Confidence 344446678999999999987 45 466665442 234 69999987766654433
No 122
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=29.10 E-value=1e+02 Score=19.65 Aligned_cols=50 Identities=10% Similarity=0.198 Sum_probs=34.0
Q ss_pred EEecCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHHH
Q 031794 96 IVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPD-G--TKKAYVRLTPDYDALDVA 147 (153)
Q Consensus 96 ~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~-g--~KKAyV~L~~d~dAldva 147 (153)
-++...+..+|++.+.. || .|..|.....+. | .--|||.+....+|....
T Consensus 9 nLp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai 61 (96)
T 2x1f_A 9 SIPYDQTEEQILDLCSN-VG-PVINLKMMFDPQTGRSKGYAFIEFRDLESSASAV 61 (96)
T ss_dssp SCCTTCCHHHHHHHHHT-TS-CEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHh-cC-CEEEEEEEeCCCCCccceEEEEEECCHHHHHHHH
Confidence 34567899999999987 45 577777665442 2 224999998776665443
No 123
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=28.51 E-value=49 Score=23.77 Aligned_cols=52 Identities=15% Similarity=0.289 Sum_probs=37.2
Q ss_pred eEEEE--EecCCCHHHHHHHHHHHhCCc--eeeEEEeeCCCCee--EEEEEcCCCCcHH
Q 031794 92 TLVFI--VDIRADKRKIKDAVKKMYEIQ--TKKVNTLIRPDGTK--KAYVRLTPDYDAL 144 (153)
Q Consensus 92 tlvF~--Vd~kAnK~qIKqAvekly~V~--V~kVNTli~p~g~K--KAyV~L~~d~dAl 144 (153)
..+|+ ++..++..+|++.++. ||.- |..|..+..++|.- -|||.+....+|.
T Consensus 45 ~~lfVgnLp~~~te~dL~~~F~~-~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~ 102 (136)
T 2hgl_A 45 FVVKLRGLPWSCSVEDVQNFLSD-CTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVK 102 (136)
T ss_dssp CEEEEESCCTTCCHHHHHHHTTT-CCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHH-hCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHH
Confidence 44454 4668999999999988 5653 77888877666533 4999998665543
No 124
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=28.44 E-value=1.1e+02 Score=20.87 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=26.6
Q ss_pred eEEEEEecCCCHHHHHHHHHHH------hCCceeeEEEe
Q 031794 92 TLVFIVDIRADKRKIKDAVKKM------YEIQTKKVNTL 124 (153)
Q Consensus 92 tlvF~Vd~kAnK~qIKqAvekl------y~V~V~kVNTl 124 (153)
-++|++++..+..|++..++++ .|-.|.++..+
T Consensus 5 E~~~Il~p~l~~e~~~~~~~~~~~~i~~~gg~i~~~e~w 43 (101)
T 1cqm_A 5 EVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVAIL 43 (101)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEee
Confidence 4689999999999999988877 46677777654
No 125
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=28.11 E-value=1e+02 Score=19.46 Aligned_cols=52 Identities=10% Similarity=0.125 Sum_probs=35.9
Q ss_pred EEEEEecCCCHHHHHHHHHHHhCC-ceeeEEEeeCCC-Cee--EEEEEcCCCCcHHH
Q 031794 93 LVFIVDIRADKRKIKDAVKKMYEI-QTKKVNTLIRPD-GTK--KAYVRLTPDYDALD 145 (153)
Q Consensus 93 lvF~Vd~kAnK~qIKqAvekly~V-~V~kVNTli~p~-g~K--KAyV~L~~d~dAld 145 (153)
++--++..++..+|++.++. ||+ +|..|..+..+. |.- =|||.+....+|..
T Consensus 5 ~V~nL~~~~t~~~l~~~F~~-~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~ 60 (90)
T 3p5t_L 5 YIGNLTWWTTDEDLTEAVHS-LGVNDILEIKFFENRANGQSKGFALVGVGSEASSKK 60 (90)
T ss_dssp EEESCCTTCCHHHHHHHHHT-TTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHH-hCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHH
Confidence 34445668899999999977 565 788888877653 322 38999986655443
No 126
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.98 E-value=68 Score=20.64 Aligned_cols=52 Identities=13% Similarity=0.116 Sum_probs=33.8
Q ss_pred EEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHHH
Q 031794 94 VFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPD-G--TKKAYVRLTPDYDALDVA 147 (153)
Q Consensus 94 vF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~-g--~KKAyV~L~~d~dAldva 147 (153)
+--++...+..+|++.++. || .|..|..+..+. | .--|||.+....+|....
T Consensus 17 V~nLp~~~t~~~l~~~f~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 71 (102)
T 2cqb_A 17 VGGLAEEVDDKVLHAAFIP-FG-DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAI 71 (102)
T ss_dssp EESCCSSCCHHHHHHHHTT-TS-CCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHhhc-cC-CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH
Confidence 3345678999999999988 44 466666554422 2 124999998766655443
No 127
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=27.82 E-value=1.4e+02 Score=19.90 Aligned_cols=54 Identities=13% Similarity=0.157 Sum_probs=37.5
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHH
Q 031794 90 NNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPD-G--TKKAYVRLTPDYDALD 145 (153)
Q Consensus 90 nNtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~-g--~KKAyV~L~~d~dAld 145 (153)
..-++--++...+..+|++.++. || .|..|..+..+. | .--|||.+....+|..
T Consensus 37 ~~l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ 93 (124)
T 2jwn_A 37 RSVYVGNVDYGSTAQDLEAHFSS-CG-SINRITILCDKFSGHPKGYAYIEFAERNSVDA 93 (124)
T ss_dssp TEEEEEEECTTCCHHHHHHHHHT-TS-CEEEEEEEEECTTSSCEEEEEEEESSHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cC-CEEEEEEEecCCCCCcccEEEEEECCHHHHHH
Confidence 34555667889999999999987 55 677777665432 2 2359999986655443
No 128
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=27.63 E-value=1e+02 Score=21.05 Aligned_cols=36 Identities=11% Similarity=0.195 Sum_probs=31.8
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEee
Q 031794 90 NNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLI 125 (153)
Q Consensus 90 nNtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli 125 (153)
..++.|.|+...+=.++|+.++..+++.+.....+.
T Consensus 45 G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 80 (111)
T 3vdz_A 45 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 80 (111)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEE
Confidence 468899999999999999999999999998876653
No 129
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=27.53 E-value=64 Score=21.51 Aligned_cols=23 Identities=4% Similarity=0.238 Sum_probs=20.1
Q ss_pred eEEEEEecCCCHHHHHHHHHHHh
Q 031794 92 TLVFIVDIRADKRKIKDAVKKMY 114 (153)
Q Consensus 92 tlvF~Vd~kAnK~qIKqAvekly 114 (153)
-++|++++..+-.|++..++++-
T Consensus 47 E~m~Il~P~l~ee~~~~~vek~~ 69 (77)
T 3zzp_A 47 EVNIVLNPNLDQSQLQNEKEIIQ 69 (77)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
Confidence 34899999999999999998864
No 130
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=27.52 E-value=1.1e+02 Score=18.95 Aligned_cols=35 Identities=14% Similarity=0.275 Sum_probs=30.9
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEe
Q 031794 90 NNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTL 124 (153)
Q Consensus 90 nNtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTl 124 (153)
..++.|.|++..+=.++|+++....|+.+.....+
T Consensus 13 g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~ 47 (79)
T 2uyz_B 13 SSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFL 47 (79)
T ss_dssp CCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEE
Confidence 46889999999999999999999999998877654
No 131
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.49 E-value=64 Score=20.45 Aligned_cols=51 Identities=8% Similarity=0.040 Sum_probs=33.9
Q ss_pred eEEEEEecCCCHHHHHHHHHHHhC-CceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHH
Q 031794 92 TLVFIVDIRADKRKIKDAVKKMYE-IQTKKVNTLIRPDGTKKAYVRLTPDYDALDVAN 148 (153)
Q Consensus 92 tlvF~Vd~kAnK~qIKqAvekly~-V~V~kVNTli~p~g~KKAyV~L~~d~dAldvan 148 (153)
-++--++...+..+|++.++.+=. +....+ ...|+ |||.+....+|.....
T Consensus 11 l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~----~~~g~--afV~f~~~~~A~~A~~ 62 (93)
T 2cqh_A 11 LYIGNLSPAVTADDLRQLFGDRKLPLAGQVL----LKSGY--AFVDYPDQNWAIRAIE 62 (93)
T ss_dssp EEEECCCTTCCHHHHHHHHHHTTCCCSSCEE----EETTE--EEECCSCHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHHcCCceEEEEE----cCCCE--EEEEECCHHHHHHHHH
Confidence 345556778999999999988544 444443 23564 9999987666554433
No 132
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=27.29 E-value=1.2e+02 Score=18.94 Aligned_cols=54 Identities=9% Similarity=0.146 Sum_probs=36.8
Q ss_pred eEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHHHH
Q 031794 92 TLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPD-G--TKKAYVRLTPDYDALDVAN 148 (153)
Q Consensus 92 tlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~-g--~KKAyV~L~~d~dAldvan 148 (153)
-++--++...+..+|++.+.. || .|..|.....+. | .--|||.+.... |.....
T Consensus 4 l~V~nLp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~ 60 (90)
T 2ki2_A 4 IYVGNLVYSATSEQVKELFSQ-FG-KVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIA 60 (90)
T ss_dssp EEEEEECTTSSHHHHTTTHHH-HT-CCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHH
T ss_pred EEECCCCCCCCHHHHHHHHHh-cC-CEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHH
Confidence 345567788999999999988 45 466666654432 2 225999998765 665544
No 133
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=27.10 E-value=78 Score=20.57 Aligned_cols=36 Identities=8% Similarity=0.151 Sum_probs=31.5
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEee
Q 031794 90 NNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLI 125 (153)
Q Consensus 90 nNtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli 125 (153)
..++.+.|+...+=.++|+.++..+++.+.....+.
T Consensus 19 G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 54 (88)
T 1sif_A 19 GKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIF 54 (88)
T ss_dssp SCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEE
Confidence 368889999999999999999999999988877654
No 134
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=26.98 E-value=1.2e+02 Score=20.34 Aligned_cols=35 Identities=14% Similarity=0.283 Sum_probs=31.1
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEee
Q 031794 91 NTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLI 125 (153)
Q Consensus 91 NtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli 125 (153)
.++.+.|+...+=.++|+.|+...|+.+.....+.
T Consensus 35 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 69 (101)
T 2klc_A 35 EKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIF 69 (101)
T ss_dssp CEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEE
Confidence 47889999999999999999999999988877654
No 135
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.69 E-value=88 Score=20.12 Aligned_cols=49 Identities=22% Similarity=0.285 Sum_probs=31.9
Q ss_pred EEecCCCHHHHH----HHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHH
Q 031794 96 IVDIRADKRKIK----DAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDV 146 (153)
Q Consensus 96 ~Vd~kAnK~qIK----qAvekly~V~V~kVNTli~p~g~KKAyV~L~~d~dAldv 146 (153)
-++...+..+++ +.++. || .|..|..+..+++.--|||++....+|...
T Consensus 16 nL~~~~~~~~l~~~l~~~F~~-~G-~v~~v~i~~~~~~rg~afV~f~~~~~A~~A 68 (96)
T 2dgx_A 16 NIDYRLSRKELQQLLQEAFAR-HG-KVKSVELSPHTDYQLKAVVQMENLQDAIGA 68 (96)
T ss_dssp SCCTTSCHHHHHHHHHHHHHH-HS-CEEEEEECSCCSTTCCEEEEESSHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhccc-cC-cEEEEEEEeCCCCCeEEEEEECCHHHHHHH
Confidence 345688999999 55554 34 577777665443322599999876665543
No 136
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.58 E-value=76 Score=22.37 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHH
Q 031794 104 RKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVAN 148 (153)
Q Consensus 104 ~qIKqAvekly~V~V~kVNTli~p~g~KKAyV~L~~d~dAldvan 148 (153)
.++.+.+.. || +|..|+... + +++|++..+.+|+...+
T Consensus 39 ~~L~~~F~~-~G-~Vilvr~v~---d--~~fVtF~d~~sAl~AI~ 76 (95)
T 1ufw_A 39 TELMQTLGS-YG-TIVLVRINQ---G--QMLVTFADSHSALSVLD 76 (95)
T ss_dssp HHHHHHHHH-HS-CCSEEEEET---T--EEEEECSCSHHHHHHHH
T ss_pred HHHHHHHHH-CC-CEEEEEEec---C--cEEEEEcChHHHHHHHh
Confidence 568888887 78 777776642 2 29999999999887655
No 137
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=25.99 E-value=99 Score=20.16 Aligned_cols=35 Identities=11% Similarity=0.293 Sum_probs=30.3
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEee
Q 031794 91 NTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLI 125 (153)
Q Consensus 91 NtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli 125 (153)
.++.|.|+...+=.++|+.|+...++.+.....+.
T Consensus 27 ~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 61 (96)
T 1wx8_A 27 DCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIF 61 (96)
T ss_dssp SEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 58889999999999999999999999887665543
No 138
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=25.98 E-value=1e+02 Score=20.21 Aligned_cols=52 Identities=17% Similarity=0.264 Sum_probs=34.0
Q ss_pred EEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHH
Q 031794 93 LVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDV 146 (153)
Q Consensus 93 lvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~KKAyV~L~~d~dAldv 146 (153)
++--++..++..+|++.+.. || .|..|.........--|||.+....+|...
T Consensus 12 ~V~nlp~~~t~~~l~~~F~~-~G-~v~~v~i~~~~~~~g~afV~f~~~~~A~~A 63 (115)
T 3lqv_A 12 YIRNLPYKITAEEMYDIFGK-YG-PIRQIRVGNTPETRGTAYVVYEDIFDAKNA 63 (115)
T ss_dssp EEESCCTTCCHHHHHHHHHT-TS-CEEEEEEECSTTTTTCEEEEESSHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEeeCCCCCcEEEEEECCHHHHHHH
Confidence 34446678899999999887 44 455666554333323599999876665443
No 139
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=25.94 E-value=1.2e+02 Score=20.32 Aligned_cols=34 Identities=9% Similarity=0.227 Sum_probs=29.9
Q ss_pred eEEEEEecCCCHHHHHHHHHHHhCCceeeEEEee
Q 031794 92 TLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLI 125 (153)
Q Consensus 92 tlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli 125 (153)
++.|.|+...+=.++|+.|+..+++.+.....+.
T Consensus 28 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 61 (106)
T 1wx7_A 28 KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF 61 (106)
T ss_dssp EEEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEE
T ss_pred cEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE
Confidence 5789999999999999999999999988877654
No 140
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=25.93 E-value=75 Score=22.09 Aligned_cols=55 Identities=18% Similarity=0.249 Sum_probs=35.9
Q ss_pred eEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHHHH
Q 031794 92 TLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPD-G--TKKAYVRLTPDYDALDVAN 148 (153)
Q Consensus 92 tlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~-g--~KKAyV~L~~d~dAldvan 148 (153)
-++--++..++..+|++.++. || .|..|..+..+. | .--|||.+....+|.....
T Consensus 49 l~V~nLp~~~te~~L~~~F~~-~G-~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~ 106 (129)
T 2kxn_B 49 LGVFGLSLYTTERDLREVFSK-YG-PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKE 106 (129)
T ss_dssp BCEETCTTSCCHHHHHHHHTT-TS-CEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHH
Confidence 344446677899999999877 45 466776654432 1 1259999987766554433
No 141
>3hvm_A Agmatine deiminase; hydrolase; 2.10A {Helicobacter pylori} SCOP: d.126.1.6 PDB: 2cmu_A
Probab=25.72 E-value=49 Score=27.98 Aligned_cols=20 Identities=15% Similarity=0.210 Sum_probs=17.5
Q ss_pred ecCCCHHHHHHHHHHHhCCc
Q 031794 98 DIRADKRKIKDAVKKMYEIQ 117 (153)
Q Consensus 98 d~kAnK~qIKqAvekly~V~ 117 (153)
++..+|.||.+.++..+|++
T Consensus 165 NP~lsk~eiE~~L~~~LGv~ 184 (330)
T 3hvm_A 165 NPHLNQNGIETMLKKELGAK 184 (330)
T ss_dssp STTSCHHHHHHHHHHHHCCS
T ss_pred CCCCCHHHHHHHHHHHhCCC
Confidence 35789999999999999983
No 142
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=25.37 E-value=1.7e+02 Score=21.02 Aligned_cols=54 Identities=7% Similarity=0.087 Sum_probs=38.5
Q ss_pred eEEEEEecCCCHHHHHHHHHHHhCC-ceeeEEEeeCCC-Cee--EEEEEcCCCCcHHHH
Q 031794 92 TLVFIVDIRADKRKIKDAVKKMYEI-QTKKVNTLIRPD-GTK--KAYVRLTPDYDALDV 146 (153)
Q Consensus 92 tlvF~Vd~kAnK~qIKqAvekly~V-~V~kVNTli~p~-g~K--KAyV~L~~d~dAldv 146 (153)
-+|--++..++..+|++.+.. ||. +|..|..+..+. |.- =|||.+....+|...
T Consensus 58 lfVgnLp~~~te~~L~~~F~~-~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~A 115 (156)
T 3n9u_C 58 VYVGSFSWWTTDQQLIQVIRS-IGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKL 115 (156)
T ss_dssp EEEECCCTTCCHHHHHHHHHH-TTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHH-HCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHH
Confidence 444456668999999999976 675 899998876643 322 399999866555443
No 143
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=25.14 E-value=33 Score=21.85 Aligned_cols=48 Identities=23% Similarity=0.216 Sum_probs=29.8
Q ss_pred EEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHH
Q 031794 93 LVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDV 146 (153)
Q Consensus 93 lvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~KKAyV~L~~d~dAldv 146 (153)
++--++...+..++++.++.. .|..|... .+.|+ |||.+....+|...
T Consensus 9 ~V~nLp~~~t~~~l~~~F~~~---~v~~~~i~-~~~g~--afV~f~~~~~a~~A 56 (88)
T 1wg1_A 9 LVKNLPQDSNCQEVHDLLKDY---DLKYCYVD-RNKRT--AFVTLLNGEQAQNA 56 (88)
T ss_dssp EEESCCSSCCHHHHHHHTCSS---CCCCEEEE-GGGTE--EEECCSCHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHhhC---CeEEEEEe-CCCcE--EEEEECCHHHHHHH
Confidence 334455678888888888775 45555442 44453 88888765554433
No 144
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.07 E-value=72 Score=21.53 Aligned_cols=48 Identities=10% Similarity=0.205 Sum_probs=32.1
Q ss_pred EEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHH
Q 031794 96 IVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVAN 148 (153)
Q Consensus 96 ~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~KKAyV~L~~d~dAldvan 148 (153)
-+...++..++++.++. || .|..|..+ ...| -|||.+....+|.....
T Consensus 22 nLp~~~te~~L~~~F~~-fG-~v~~v~i~-~~kg--~aFVef~~~~~A~~Ai~ 69 (101)
T 2cq1_A 22 KLPGEVTETEVIALGLP-FG-KVTNILML-KGKN--QAFLELATEEAAITMVN 69 (101)
T ss_dssp SCCTTCCHHHHHHTTTT-TS-CEEEEEEE-TTTT--EEEEEESSHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHh-cC-CEEEEEEE-CCCC--EEEEEECCHHHHHHHHH
Confidence 35567899999988876 56 46666443 2234 49999987766655433
No 145
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=24.76 E-value=87 Score=20.67 Aligned_cols=35 Identities=20% Similarity=0.181 Sum_probs=31.0
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEee
Q 031794 91 NTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLI 125 (153)
Q Consensus 91 NtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli 125 (153)
.++.|.|+...+=.++|+.|+...++.+.....+.
T Consensus 28 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 62 (93)
T 2l7r_A 28 ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLL 62 (93)
T ss_dssp SEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEE
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEE
Confidence 57889999999999999999999999988777654
No 146
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=24.73 E-value=1.2e+02 Score=21.28 Aligned_cols=54 Identities=13% Similarity=0.255 Sum_probs=36.6
Q ss_pred eEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCC-CCee--EEEEEcCCCCcHHHHH
Q 031794 92 TLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRP-DGTK--KAYVRLTPDYDALDVA 147 (153)
Q Consensus 92 tlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p-~g~K--KAyV~L~~d~dAldva 147 (153)
-++--++...+..+|++.++. || .|..|..+..+ .|.- -|||.+....+|....
T Consensus 107 l~V~nLp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 163 (196)
T 1l3k_A 107 IFVGGIKEDTEEHHLRDYFEQ-YG-KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163 (196)
T ss_dssp EEEECCTTTCCHHHHHHHHTT-TS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHhc-CC-CeEEEEEeecCCCCCccceEEEEECCHHHHHHHH
Confidence 334445668999999999876 55 47777777654 2322 4999998776655443
No 147
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=24.67 E-value=1.2e+02 Score=19.60 Aligned_cols=35 Identities=11% Similarity=0.130 Sum_probs=31.0
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEee
Q 031794 91 NTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLI 125 (153)
Q Consensus 91 NtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli 125 (153)
.++.+.|+...+=.++|+.|+...|+.+.....+.
T Consensus 15 ~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 49 (88)
T 2hj8_A 15 RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 49 (88)
T ss_dssp CEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEES
T ss_pred CEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEE
Confidence 68889999999999999999999999988877653
No 148
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=24.59 E-value=1.1e+02 Score=26.13 Aligned_cols=53 Identities=15% Similarity=0.295 Sum_probs=34.5
Q ss_pred EEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCC-CCee--EEEEEcCCCCcHHHHH
Q 031794 93 LVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRP-DGTK--KAYVRLTPDYDALDVA 147 (153)
Q Consensus 93 lvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p-~g~K--KAyV~L~~d~dAldva 147 (153)
||-.++..++..+|++.|.. || .|..|..+..+ .|.- -|||.+....+|....
T Consensus 106 fV~nL~~~~te~~L~~~F~~-~G-~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai 161 (437)
T 3pgw_S 106 FVARVNYDTTESKLRREFEV-YG-PIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAY 161 (437)
T ss_pred EEeCCCCCCCHHHHHHHHHH-cC-CeeEEEeeccCCCCCccceEEEeeccHHHHHHHH
Confidence 34445668999999999988 55 46667665443 2221 3999998776654433
No 149
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=24.49 E-value=91 Score=20.46 Aligned_cols=45 Identities=16% Similarity=0.277 Sum_probs=31.5
Q ss_pred EecC-CCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHH
Q 031794 97 VDIR-ADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVAN 148 (153)
Q Consensus 97 Vd~k-AnK~qIKqAvekly~V~V~kVNTli~p~g~KKAyV~L~~d~dAldvan 148 (153)
++.. .+..+|++.++. || .|..|.. +.|+ |||.+....+|.....
T Consensus 35 l~~~~~t~~~l~~~F~~-~G-~v~~v~i---~~g~--afV~f~~~~~A~~A~~ 80 (110)
T 1wf1_A 35 LNTALVKKSDVETIFSK-YG-RVAGCSV---HKGY--AFVQYSNERHARAAVL 80 (110)
T ss_dssp CCCSSCCHHHHHHHHGG-GS-CCSEEEE---ETTE--EEEECSSSHHHHHHHH
T ss_pred CCcccCCHHHHHHHHHh-CC-CeEEEEE---eCCE--EEEEECCHHHHHHHHH
Confidence 4556 899999999987 44 3444544 4564 9999988777665543
No 150
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=24.42 E-value=56 Score=22.22 Aligned_cols=48 Identities=15% Similarity=0.252 Sum_probs=34.3
Q ss_pred EecCCCHHHHHHHHHHHhCC--ceeeEEEeeCCCCee--EEEEEcCCCCcHHH
Q 031794 97 VDIRADKRKIKDAVKKMYEI--QTKKVNTLIRPDGTK--KAYVRLTPDYDALD 145 (153)
Q Consensus 97 Vd~kAnK~qIKqAvekly~V--~V~kVNTli~p~g~K--KAyV~L~~d~dAld 145 (153)
++..++..+|++.++. ||. .|..|..+..++|.- -|||.+....+|..
T Consensus 25 Lp~~~te~~l~~~F~~-~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~ 76 (118)
T 2db1_A 25 LPWSCSIEDVQNFLSD-CTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKL 76 (118)
T ss_dssp CCTTCCHHHHHHHTTT-SCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHH
T ss_pred CCCCCCHHHHHHHHHH-cCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHH
Confidence 4557999999998877 454 277888877666532 59999987655443
No 151
>3h7c_X Agmatine deiminase; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; HET: MSE 211 1PE; 1.50A {Arabidopsis thaliana} SCOP: d.126.1.6 PDB: 1vkp_A* 2q3u_A* 3h7k_A*
Probab=23.98 E-value=55 Score=28.27 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=17.5
Q ss_pred ecCCCHHHHHHHHHHHhCCc
Q 031794 98 DIRADKRKIKDAVKKMYEIQ 117 (153)
Q Consensus 98 d~kAnK~qIKqAvekly~V~ 117 (153)
++..+|.||.+.++..+|++
T Consensus 187 NP~lsk~eIE~~L~~~LGv~ 206 (383)
T 3h7c_X 187 NPHMSKEQIEEELKKYLGVQ 206 (383)
T ss_dssp CTTSCHHHHHHHHHHHHCCC
T ss_pred CCCCCHHHHHHHHHHHhCCc
Confidence 36789999999999999984
No 152
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=23.98 E-value=2.3e+02 Score=21.15 Aligned_cols=62 Identities=15% Similarity=0.274 Sum_probs=39.4
Q ss_pred hhhccCCeEEEEEec----CCCHHHHHHHHHHHhCCcee--eEEEeeCC-C-CeeEEEEEcCCCCcHHHHHHhh
Q 031794 85 KKIEDNNTLVFIVDI----RADKRKIKDAVKKMYEIQTK--KVNTLIRP-D-GTKKAYVRLTPDYDALDVANKI 150 (153)
Q Consensus 85 k~~E~nNtlvF~Vd~----kAnK~qIKqAvekly~V~V~--kVNTli~p-~-g~KKAyV~L~~d~dAldvanki 150 (153)
.++.. .+++|.|.- ..+|.||++.+-++|+++.. -|--+.+. | |.=..|... ||.+|.|.++
T Consensus 16 ~LL~R-ke~v~dV~HpG~aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I---Yds~d~akk~ 85 (135)
T 3u5c_Y 16 PLLAR-KQFVVDVLHPNRANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV---YNSVAEAKKF 85 (135)
T ss_dssp GGGTE-EEEEEEEECSSSCCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE---ESSHHHHHHH
T ss_pred cCcCc-EEEEEEEEeCCCCCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE---eCCHHHHHhc
Confidence 34544 577887753 46799999999999998643 33333322 2 333444444 5778888764
No 153
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=23.84 E-value=1.4e+02 Score=20.42 Aligned_cols=51 Identities=14% Similarity=0.141 Sum_probs=34.8
Q ss_pred CeEEEEE--ecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHH
Q 031794 91 NTLVFIV--DIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDV 146 (153)
Q Consensus 91 NtlvF~V--d~kAnK~qIKqAvekly~V~V~kVNTli~p~g~KKAyV~L~~d~dAldv 146 (153)
+..+|+- ...++..++++.++. || .|.+|..+ +..| -|||.+....+|...
T Consensus 21 s~~l~V~NLp~~~te~~L~~lF~~-fG-~V~~v~i~-~~kg--~AFVef~~~~~A~~A 73 (100)
T 3r27_A 21 SPVVHIRGLIDGVVEADLVEALQE-FG-PISYVVVM-PKKR--QALVEFEDVLGACNA 73 (100)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHGG-GS-CEEEEEEE-TTTT--EEEEEESSHHHHHHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHhc-cC-CEEEEEEE-cCCC--EEEEEECCHHHHHHH
Confidence 3444544 457899999999987 66 57777654 3445 599999876665444
No 154
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=23.72 E-value=1.4e+02 Score=20.02 Aligned_cols=34 Identities=9% Similarity=0.227 Sum_probs=30.1
Q ss_pred eEEEEEecCCCHHHHHHHHHHHhCCceeeEEEee
Q 031794 92 TLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLI 125 (153)
Q Consensus 92 tlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli 125 (153)
++.+.|+...+=.++|+.|+...|+.+.....+.
T Consensus 33 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 66 (100)
T 1yqb_A 33 KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF 66 (100)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred cEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE
Confidence 5688999999999999999999999988877654
No 155
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=22.96 E-value=1.1e+02 Score=20.45 Aligned_cols=35 Identities=6% Similarity=0.042 Sum_probs=30.4
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEee
Q 031794 91 NTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLI 125 (153)
Q Consensus 91 NtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli 125 (153)
.++.+.|+..++=.++|+.|+...++.+.....+.
T Consensus 22 ~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 56 (102)
T 1v5o_A 22 VTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVY 56 (102)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEE
Confidence 58889999999999999999999999987766543
No 156
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.68 E-value=1.2e+02 Score=19.01 Aligned_cols=54 Identities=15% Similarity=0.171 Sum_probs=34.8
Q ss_pred eEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHHH
Q 031794 92 TLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPD-G--TKKAYVRLTPDYDALDVA 147 (153)
Q Consensus 92 tlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~-g--~KKAyV~L~~d~dAldva 147 (153)
-++--++...+..+|++.++. || .|..|.....+. | .--|||.+....+|....
T Consensus 19 l~V~nlp~~~t~~~l~~~f~~-~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 75 (94)
T 2e5h_A 19 VYVSNLPFSLTNNDLYRIFSK-YG-KVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCT 75 (94)
T ss_dssp EEEESCCTTSCHHHHHHHTTT-TS-CEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHh-cC-CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHH
Confidence 344445678999999988877 45 366776654433 1 114999998766655443
No 157
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=22.68 E-value=1.6e+02 Score=18.97 Aligned_cols=54 Identities=11% Similarity=0.273 Sum_probs=35.5
Q ss_pred EEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHHHHh
Q 031794 94 VFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPD-G--TKKAYVRLTPDYDALDVANK 149 (153)
Q Consensus 94 vF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~-g--~KKAyV~L~~d~dAldvank 149 (153)
+--++...+..+|++.+.. || .|..|..+..+. | .--|||.+....+|......
T Consensus 20 V~nLp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 76 (111)
T 1x4h_A 20 IRNLSFDSEEEALGEVLQQ-FG-DLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAA 76 (111)
T ss_dssp EESCCTTCCHHHHHHHHHT-TS-CEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHH
T ss_pred EECCCCCCCHHHHHHHHHh-cC-CeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHH
Confidence 3345668999999999987 45 466676654432 1 12499999877666554443
No 158
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=22.67 E-value=95 Score=20.53 Aligned_cols=51 Identities=6% Similarity=0.042 Sum_probs=34.2
Q ss_pred EEecCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHHHH
Q 031794 96 IVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPD-G--TKKAYVRLTPDYDALDVAN 148 (153)
Q Consensus 96 ~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~-g--~KKAyV~L~~d~dAldvan 148 (153)
-++...+..+|++.++. || .|..|..+..+. | .--|||.+....+|.....
T Consensus 47 nlp~~~t~~~l~~~F~~-~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 100 (118)
T 2khc_A 47 HLPQEFTDTDLASTFLP-FG-NVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIK 100 (118)
T ss_dssp CSCTTCCHHHHHHHTTT-SC-EEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHh-cC-CEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 34567899999988876 55 466776654432 1 2259999997777655444
No 159
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=22.41 E-value=1.6e+02 Score=19.09 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=31.4
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEee
Q 031794 90 NNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLI 125 (153)
Q Consensus 90 nNtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli 125 (153)
..++.+.|+...+=.++|+.++...|+.+.....+.
T Consensus 20 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 55 (84)
T 2kk8_A 20 GSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIV 55 (84)
T ss_dssp SCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE
Confidence 368889999999999999999999999887776654
No 160
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.31 E-value=96 Score=20.51 Aligned_cols=51 Identities=4% Similarity=0.114 Sum_probs=33.8
Q ss_pred eEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCC-Ce--eEEEEEcCCCCcHH
Q 031794 92 TLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPD-GT--KKAYVRLTPDYDAL 144 (153)
Q Consensus 92 tlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~-g~--KKAyV~L~~d~dAl 144 (153)
-++--++...+..+|++.+.. || .|..|..+..+. |. --|||.+....+|.
T Consensus 30 l~V~nLp~~~te~~l~~~F~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~ 83 (116)
T 1x4b_A 30 LFIGGLSFETTEESLRNYYEQ-WG-KLTDCVVMRDPASKRSRGFGFVTFSSMAEVD 83 (116)
T ss_dssp EEEECCTTCCCHHHHHHHHTS-SC-CCSEEEEECCTTTSSCCSEEEEECSSHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CEEEEEEEECCCCCCcCceEEEEeCCHHHHH
Confidence 444556678999999998876 44 466776665443 21 15999998655543
No 161
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=22.16 E-value=24 Score=23.18 Aligned_cols=49 Identities=12% Similarity=0.072 Sum_probs=33.9
Q ss_pred EEEecCCCHHHHHHHHHHHhCCceeeEEEeeCC--CC--eeEEEEEcCCCCcHHHH
Q 031794 95 FIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRP--DG--TKKAYVRLTPDYDALDV 146 (153)
Q Consensus 95 F~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p--~g--~KKAyV~L~~d~dAldv 146 (153)
--++..++..+|++.++. || |..|.....+ .| .--|||.+....+|...
T Consensus 25 ~nLp~~~t~~~l~~~F~~-~G--i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A 77 (100)
T 2j76_E 25 GNLPYDVTEESIKEFFRG-LN--ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSA 77 (100)
T ss_dssp SCCSSCCSSSHHHHHSCS-SC--EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHh-cC--CeEEEEEecCCcCCccCeEEEEEECCHHHHHHH
Confidence 335667899999998887 57 8888876654 11 11599999876665443
No 162
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=22.12 E-value=1.3e+02 Score=22.17 Aligned_cols=54 Identities=15% Similarity=0.265 Sum_probs=37.6
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCCee-EEEEEcCCCCcHHHH
Q 031794 91 NTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTK-KAYVRLTPDYDALDV 146 (153)
Q Consensus 91 NtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g~K-KAyV~L~~d~dAldv 146 (153)
+-++--++...+..+|++.++. || .|..|..+...++.+ -|||.+....+|...
T Consensus 105 ~l~v~nl~~~~t~~~l~~~F~~-~G-~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~A 159 (213)
T 4f02_A 105 NIFIKNLDKSIDNKALYDTFSA-FG-NILSCKVVCDENGSKGYGFVHFETQEAAERA 159 (213)
T ss_dssp EEEEESCCTTCCHHHHHHHHGG-GS-CEEEEEEEEETTEEEEEEEEEESSHHHHHHH
T ss_pred cceECCcccccHHHHHHHHHhh-cC-CeEEEEeeccCCCCceEEEEEeCCHHHHHHH
Confidence 4555667778999999999987 45 566777665554322 489999876665543
No 163
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=22.04 E-value=1.6e+02 Score=20.74 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=31.0
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEee
Q 031794 91 NTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLI 125 (153)
Q Consensus 91 NtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli 125 (153)
.++.|.|+...+=.++|+.|+..+++.+.....+.
T Consensus 42 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 76 (125)
T 1j8c_A 42 EKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIF 76 (125)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEE
T ss_pred eEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEE
Confidence 57889999999999999999999999988877654
No 164
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=22.01 E-value=1e+02 Score=19.95 Aligned_cols=36 Identities=6% Similarity=0.209 Sum_probs=31.0
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEee
Q 031794 90 NNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLI 125 (153)
Q Consensus 90 nNtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli 125 (153)
..++.+.|+...+=.++|+.++...|+.+.....+.
T Consensus 21 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 56 (85)
T 2kd0_A 21 GKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIF 56 (85)
T ss_dssp TEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEE
T ss_pred CEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE
Confidence 357889999999999999999999999987777653
No 165
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=21.35 E-value=47 Score=22.91 Aligned_cols=56 Identities=11% Similarity=0.148 Sum_probs=36.5
Q ss_pred eEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCC-CCee--EEEEEcCCCCcHHHHHH
Q 031794 92 TLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRP-DGTK--KAYVRLTPDYDALDVAN 148 (153)
Q Consensus 92 tlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p-~g~K--KAyV~L~~d~dAldvan 148 (153)
-+|--++...+..+|++.++.+=.|....|..+..+ .|.- =|||.+... +|.....
T Consensus 26 lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~ 84 (131)
T 2m2b_A 26 IILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQ 84 (131)
T ss_dssp EEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHH
Confidence 334445668899999999987655544446666554 2211 399999877 7665544
No 166
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=21.27 E-value=2.3e+02 Score=21.50 Aligned_cols=54 Identities=15% Similarity=0.042 Sum_probs=38.8
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCCC-eeEEEEEcCCCCcHHHH
Q 031794 91 NTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDG-TKKAYVRLTPDYDALDV 146 (153)
Q Consensus 91 NtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~g-~KKAyV~L~~d~dAldv 146 (153)
.-++--++..++..+|++.++. || .|..|..+..++| .--|||.+....+|...
T Consensus 43 ~l~V~nLp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A 97 (292)
T 2ghp_A 43 TVLVKNLPKSYNQNKVYKYFKH-CG-PIIHVDVADSLKKNFRFARIEFARYDGALAA 97 (292)
T ss_dssp EEEEEEECTTCCHHHHHHHHGG-GS-CEEEEEEEECTTSSSEEEEEEESSHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEECCCCCcEEEEEEECCHHHHHHH
Confidence 3455567778999999999887 56 6778887765544 45799999876665443
No 167
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=21.09 E-value=1.5e+02 Score=20.10 Aligned_cols=36 Identities=11% Similarity=0.195 Sum_probs=31.4
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEee
Q 031794 90 NNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLI 125 (153)
Q Consensus 90 nNtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli 125 (153)
..++.+.|+...+=.++|+.++...++.+.....+.
T Consensus 45 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 80 (111)
T 2ojr_A 45 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 80 (111)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEE
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEE
Confidence 357889999999999999999999999988777654
No 168
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=20.94 E-value=76 Score=21.59 Aligned_cols=36 Identities=3% Similarity=0.079 Sum_probs=31.3
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEee
Q 031794 90 NNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLI 125 (153)
Q Consensus 90 nNtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli 125 (153)
..++.|.|+...+=.++|+.|+..+|+.+.....+.
T Consensus 11 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 46 (106)
T 3m62_B 11 KEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIY 46 (106)
T ss_dssp CCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEE
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE
Confidence 368889999999999999999999999988876544
No 169
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=20.44 E-value=1.5e+02 Score=18.70 Aligned_cols=35 Identities=11% Similarity=0.237 Sum_probs=30.4
Q ss_pred CeEEE-EEecCCCHHHHHHHHHHHhCCceeeEEEee
Q 031794 91 NTLVF-IVDIRADKRKIKDAVKKMYEIQTKKVNTLI 125 (153)
Q Consensus 91 NtlvF-~Vd~kAnK~qIKqAvekly~V~V~kVNTli 125 (153)
.++.+ .|+...+=.++|+.|+...++.+.....+.
T Consensus 19 ~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~ 54 (89)
T 1wy8_A 19 KTCTIEDVSRKATIEELRERVWALFDVRPECQRLFY 54 (89)
T ss_dssp CEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEE
T ss_pred ceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEE
Confidence 47889 599999999999999999999988777654
No 170
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=20.37 E-value=1.1e+02 Score=20.35 Aligned_cols=35 Identities=6% Similarity=0.134 Sum_probs=30.1
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHhCCceeeEEEe
Q 031794 90 NNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTL 124 (153)
Q Consensus 90 nNtlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTl 124 (153)
..++.+.|+..++=.++|+.|+...++.+..-..+
T Consensus 26 g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~ 60 (95)
T 1v86_A 26 KTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVM 60 (95)
T ss_dssp TEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCB
T ss_pred CEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE
Confidence 35788999999999999999999999988766554
No 171
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=20.24 E-value=1.6e+02 Score=18.06 Aligned_cols=52 Identities=17% Similarity=0.165 Sum_probs=35.6
Q ss_pred eEEEEEecCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHH
Q 031794 92 TLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPD-G--TKKAYVRLTPDYDALD 145 (153)
Q Consensus 92 tlvF~Vd~kAnK~qIKqAvekly~V~V~kVNTli~p~-g--~KKAyV~L~~d~dAld 145 (153)
-++--++...+..+|++.++. || .|..|.....+. | .--|||.+....+|..
T Consensus 9 l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ 63 (89)
T 3ucg_A 9 IYVGNVDYGATAEELEAHFHG-CG-SVNRVTILCDKFSGHPKGFAYIEFSDKESVRT 63 (89)
T ss_dssp EEEESCCTTCCHHHHHHHHGG-GC-CEEEEEEEESCSSSSCCEEEEEEESSTHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-CC-CEEEEEEEecCCCCCcceEEEEEECCHHHHHH
Confidence 344445668899999999987 55 477777765542 2 2359999987765543
Done!