RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 031794
         (153 letters)



>d1vqos1 d.12.1.1 (S:1-81) Ribosomal protein L23 {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 81

 Score =  102 bits (256), Expect = 3e-30
 Identities = 35/80 (43%), Positives = 53/80 (66%)

Query: 71  YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGT 130
           + ++K+P  TE AM  ++  N L F VD RA K ++ DAV++ Y++  ++VNT    DG 
Sbjct: 2   WDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGE 61

Query: 131 KKAYVRLTPDYDALDVANKI 150
           KKA VRL+ D DA +VA++I
Sbjct: 62  KKAVVRLSEDDDAQEVASRI 81


>d2qamt1 d.12.1.1 (T:1-93) Ribosomal protein L23 {Escherichia coli
           [TaxId: 562]}
          Length = 93

 Score = 73.2 bits (180), Expect = 1e-18
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 13/90 (14%)

Query: 66  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLI 125
            +    ++L+ P  +E A   +E +NT+V  V   A K +IK AV+K++E++ + VNTL+
Sbjct: 3   REERLLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLV 62

Query: 126 RP-------------DGTKKAYVRLTPDYD 142
                             KKAYV L    +
Sbjct: 63  VKGKVKRHGQRIGRRSDWKKAYVTLKEGQN 92


>d2j01x1 d.12.1.1 (X:3-95) Ribosomal protein L23 {Thermus
           thermophilus [TaxId: 274]}
          Length = 93

 Score = 64.3 bits (157), Expect = 4e-15
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 14/85 (16%)

Query: 71  YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRP--- 127
           Y ++  P+ +E A           F V  +A K +IK+AV+  ++++  KVNTL      
Sbjct: 3   YDVILAPVLSEKAYAGFA-EGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKK 61

Query: 128 ----------DGTKKAYVRLTPDYD 142
                        KKA V++ P   
Sbjct: 62  KRLGRYLGKRPDRKKAIVQVAPGQK 86


>d2zjrq1 d.12.1.1 (Q:2-94) Ribosomal protein L23 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 93

 Score = 64.3 bits (157), Expect = 4e-15
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 14/86 (16%)

Query: 70  HYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRP-- 127
           HY IL+ P+ +E A   +E      F V  +A K +IKDA+++ + ++   ++T+  P  
Sbjct: 2   HYDILQAPVISEKAYSAME-RGVYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGK 60

Query: 128 -----------DGTKKAYVRLTPDYD 142
                      +  KKA VRL     
Sbjct: 61  RKRVGRFIGQRNDRKKAIVRLAEGQS 86


>d2fiqa1 c.1.10.7 (A:1-420) Putative tagatose 6-phosphate kinase 1
           GatZ {Escherichia coli [TaxId: 562]}
          Length = 420

 Score = 28.3 bits (63), Expect = 0.37
 Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 33  KAKKMRTSVTFHRPKTLKKDRNPKYPRISA---PPRNKLDHYQILKYPLTTESAMKKIED 89
             +    ++  H+   + +       R+ A    P  + DH  I+ Y      A+ +  +
Sbjct: 189 HVEDAANTLRTHQKAFIARGLTEALTRVIAIVVQPGVEFDHSNIIHYQPQEAQALAQWIE 248

Query: 90  NNTLVF 95
           N  +V+
Sbjct: 249 NTRMVY 254


>d1u3da1 a.99.1.1 (A:198-497) Cryptochrome C-terminal domain {Thale
           cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 300

 Score = 26.8 bits (58), Expect = 1.2
 Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 44  HRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKK---IEDNNTLVFIVDIR 100
            + +  K D N +Y R   P  ++L    I       ES ++       +N  + IV + 
Sbjct: 222 PQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLD 281

Query: 101 ADKRKIKDAVKKMYEI 116
             K ++ +A+ +M+++
Sbjct: 282 EAKARLHEALSQMWQL 297


>d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase
           UGT71G1 {Medicago truncatula [TaxId: 3880]}
          Length = 461

 Score = 26.2 bits (56), Expect = 2.1
 Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 4/34 (11%)

Query: 9   KKGDPKAQATKVAKAVK----SGPTFKKKAKKMR 38
           +KG     A ++ K +K          KK ++M+
Sbjct: 402 RKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMK 435


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.130    0.362 

Gapped
Lambda     K      H
   0.267   0.0578    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 540,247
Number of extensions: 24122
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 19
Length of query: 153
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 75
Effective length of database: 1,336,656
Effective search space: 100249200
Effective search space used: 100249200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.0 bits)