BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031795
(153 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GHD|A Chain A, Crystal Structure Of The Glutaryl-7-Aminocephalosporanic
Acid Acylase By Mad Phasing
Length = 171
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 5 TPQKLSTVVVYRLPVISYDSI---HSAENLLYLKNPTKTLGVREQPN 48
P +S V LPV D + H N LY+ +P +TLG + P+
Sbjct: 120 NPDDISPDVRQVLPVSGADVVAHAHRLXNFLYVASPGRTLGEGDPPD 166
>pdb|1FM2|A Chain A, The 2 Angstrom Crystal Structure Of Cephalosporin Acylase
Length = 169
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 5 TPQKLSTVVVYRLPVISYDSI---HSAENLLYLKNPTKTLGVREQPN 48
P +S V LPV D + H N LY+ +P +TLG + P+
Sbjct: 118 NPDDISPEVRQVLPVSGADVVAHAHRLXNFLYVASPGRTLGEGDPPD 164
>pdb|3JTR|A Chain A, Mutations In Cephalosporin Acylase Affecting Stability And
Autoproteolysis
Length = 169
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 5 TPQKLSTVVVYRLPVISYDSI---HSAENLLYLKNPTKTLGVREQPN 48
P +S V LPV D + H N LY+ +P +TLG + P+
Sbjct: 118 NPDDISPDVRQVLPVSGADVVAHAHRLMNFLYVASPGRTLGEGDPPD 164
>pdb|3JTQ|A Chain A, Mutations In Cephalosporin Acylase Affecting Stability And
Autoproteolysis
Length = 169
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 5 TPQKLSTVVVYRLPVISYDSI---HSAENLLYLKNPTKTLGVREQPN 48
P +S V LPV D + H N LY+ +P +TLG + P+
Sbjct: 118 NPDDISPDVRQVLPVSGADVVAHAHRLMNFLYVASPGRTLGEGDPPD 164
>pdb|2AE4|A Chain A, Glutaryl 7-Aminocephalosporanic Acid Acylase: Mutational
Study Of Activation Mechanism
Length = 166
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 5 TPQKLSTVVVYRLPVISYDSI---HSAENLLYLKNPTKTLGVREQPN 48
P +S V LPV D + H N LY+ +P +TLG + P+
Sbjct: 118 NPDDISPDVRQVLPVSGADVVAHAHRLMNFLYVASPGRTLGQGDPPD 164
>pdb|2ADV|A Chain A, Crystal Structures Of Glutaryl 7-Aminocephalosporanic Acid
Acylase: Mutational Study Of Activation Mechanism
pdb|2AE3|A Chain A, Glutaryl 7-Aminocephalosporanic Acid Acylase: Mutational
Study Of Activation Mechanism
pdb|2AE5|A Chain A, Glutaryl 7-Aminocephalosporanic Acid Acylase: Mutational
Study Of Activation Mechanism
Length = 166
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 5 TPQKLSTVVVYRLPVISYDSI---HSAENLLYLKNPTKTLGVREQPN 48
P +S V LPV D + H N LY+ +P +TLG + P+
Sbjct: 118 NPDDISPDVRQVLPVSGADVVAHAHRLMNFLYVASPGRTLGEGDPPD 164
>pdb|1KEH|A Chain A, Precursor Structure Of Cephalosporin Acylase
Length = 689
Score = 27.3 bits (59), Expect = 3.5, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 6 PQKLSTVVVYRLPVISYDSI---HSAENLLYLKNPTKTLGVREQPNSINSKTMSVAAA 60
P +S V LPV D + H N LY+ +P +TLG + P+ + S A A
Sbjct: 119 PDDISPEVRQVLPVSGADVVAHAHRLMNFLYVASPGRTLGEGDPPDLADQGANSWAVA 176
>pdb|3S8R|A Chain A, Crystal Structures Of Glutaryl 7-Aminocephalosporanic Acid
Acylase: Insight Into Autoproteolytic Activation
pdb|3S8R|B Chain B, Crystal Structures Of Glutaryl 7-Aminocephalosporanic Acid
Acylase: Insight Into Autoproteolytic Activation
Length = 697
Score = 26.9 bits (58), Expect = 4.5, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 6 PQKLSTVVVYRLPVISYDSI---HSAENLLYLKNPTKTLGVREQPNSINSKTMSVAAA 60
P +S V LPV D + H N LY+ +P +TLG + P+ + S A A
Sbjct: 119 PDDISPDVRQVLPVSGADVVAHAHRLMNFLYVASPGRTLGEGDPPDLADQGANSWAVA 176
>pdb|3O1A|A Chain A, Structure Of Oxye (Cyp165d3), A Cytochrome P450 Involved
In Teicoplanin Biosynthesis
Length = 417
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 31 LLYLKNPTKTLGVREQPNSINSKTMSVAAARSVLRSTATPRAAVSGRLAAG 81
LL + +P + +RE+P I+S T V S++ + A PR A++ AG
Sbjct: 273 LLLVTHPDQMALLREKPELIDSATEEVLRHASIVEAPA-PRVALADVRMAG 322
>pdb|3OO3|A Chain A, Crystal Structure Of The Orf6 (Cyp165d3) Monooxygenase
Involved In Teicoplanin Biosynthesis
Length = 384
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 31 LLYLKNPTKTLGVREQPNSINSKTMSVAAARSVLRSTATPRAAVSGRLAAG 81
LL + +P + +RE+P I+S T V S++ + A PR A++ AG
Sbjct: 240 LLLVTHPDQMALLREKPELIDSATEEVLRHASIVEAPA-PRVALADVRMAG 289
>pdb|2IA7|A Chain A, Crystal Structure Of Putative Tail Lysozyme (Np_952040.1)
From Geobacter Sulfurreducens At 1.44 A Resolution
Length = 134
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 38 TKTLGVREQPNSINSKTMSVAAARSVLRSTATPRAAVSGRLAAGIKPKAAPTSSPFRM 95
T TLG+ E N + + +L TA+PR A GRL I+ + T++ F +
Sbjct: 69 TTTLGLIE--NEVKEALILWEPRIELLSVTASPREAAEGRLLIDIEYRVRSTNTRFNL 124
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.125 0.351
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,775,724
Number of Sequences: 62578
Number of extensions: 111491
Number of successful extensions: 213
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 213
Number of HSP's gapped (non-prelim): 11
length of query: 153
length of database: 14,973,337
effective HSP length: 90
effective length of query: 63
effective length of database: 9,341,317
effective search space: 588502971
effective search space used: 588502971
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)