BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031795
         (153 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q66613|GB_EHV2 Envelope glycoprotein B OS=Equine herpesvirus 2 (strain 86/87) GN=8
           PE=3 SV=1
          Length = 874

 Score = 30.0 bits (66), Expect = 6.1,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 60  ARSVLRSTATPRAAVSGRLAAGIKPKAAPTSSPFRMPKQNPLSQRLFRSPVELSC 114
           A+ V+  T TP A     + A   P  A    PFR+   +P    +FR P+E SC
Sbjct: 25  AQEVVAETTTPFATHRPEVVAEENP--ANPFLPFRVCGASPTGGEIFRFPLEESC 77


>sp|O64668|PSNA_ARATH Presenilin-like protein At1g08700 OS=Arabidopsis thaliana
          GN=At1g08700 PE=2 SV=1
          Length = 453

 Score = 29.3 bits (64), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 9  LSTVVVYRLPVISYDSIHSAENLLYLKNPTKTLGVREQPNSINSKTMSVAAA 60
          L  ++ Y L V S   I SA NL+Y++NP+ +  V+ + +  N+    V  A
Sbjct: 26 LVVLLTYSLSVTSDPQIRSAANLIYIENPSDSTTVKLEGSLANAIVFVVLIA 77


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.125    0.351 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,329,225
Number of Sequences: 539616
Number of extensions: 1599029
Number of successful extensions: 5270
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 5246
Number of HSP's gapped (non-prelim): 47
length of query: 153
length of database: 191,569,459
effective HSP length: 107
effective length of query: 46
effective length of database: 133,830,547
effective search space: 6156205162
effective search space used: 6156205162
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)