Query 031795
Match_columns 153
No_of_seqs 99 out of 113
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 08:21:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031795.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031795hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fgx_A Rbstp2171; structural g 52.1 8.9 0.0003 28.8 2.6 52 13-70 19-75 (114)
2 1ybk_A Tetrabrachion; right ha 15.7 2.7 9.2E-05 27.9 -5.2 23 13-35 11-33 (52)
3 1jb0_D Photosystem 1 reaction 8.8 1.1E+02 0.0037 23.8 1.0 27 14-40 38-64 (138)
4 3lk4_C CD2-associated protein; 6.4 1.4E+02 0.0049 17.7 0.5 13 21-33 2-14 (29)
5 1hym_B CMTI-V, hydrolyzed cucu 5.8 1.9E+02 0.0063 16.4 0.7 10 13-22 16-25 (26)
6 1oc7_A Cllulase, CEL6A, cellob 5.7 1.9E+02 0.0065 25.1 1.1 26 4-29 77-102 (364)
7 2wsc_D Photosystem I reaction 5.5 1.4E+02 0.0048 24.6 0.1 31 16-46 115-145 (212)
8 3k5i_A Phosphoribosyl-aminoimi 5.1 1.6E+02 0.0054 23.9 0.2 21 25-45 9-31 (403)
9 2brq_C Integrin beta-7 subunit 4.5 2.4E+02 0.0083 16.1 0.7 14 26-40 4-17 (31)
10 4a1x_C CP5-46-A peptide; hydro 4.1 3.4E+02 0.012 15.6 1.1 17 13-29 6-22 (26)
No 1
>3fgx_A Rbstp2171; structural genomics, PSI-2, Pro structure initiative, midwest center for structural genomic structural genomics; 2.90A {Bacillus stearothermophilus}
Probab=52.07 E-value=8.9 Score=28.84 Aligned_cols=52 Identities=23% Similarity=0.354 Sum_probs=31.0
Q ss_pred EEEeeee--eeecccccccceeeccCCCccccccccCCCcchhhhh---HHHHHHHhhhcccc
Q 031795 13 VVYRLPV--ISYDSIHSAENLLYLKNPTKTLGVREQPNSINSKTMS---VAAARSVLRSTATP 70 (153)
Q Consensus 13 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tmA---~aAaRS~lRSaasr 70 (153)
-||++-+ +.+|.-...|...|.||||.+.=-|-+ .+|| .+|++.|+..+...
T Consensus 19 k~y~v~~~t~~~dd~~e~~~~y~Fk~Pt~~~YnRyi------~t~a~~~~aAakNflmd~V~~ 75 (114)
T 3fgx_A 19 RVYEIRIEGLEYENGEEAEFVFYFTRPKVSDISRFT------KELNSKPDMAMKNLTFSCIVP 75 (114)
T ss_dssp SEEEEEECC--------CCEEEEEECCCHHHHHHHH------HHHHHCHHHHHHHHHHTTBCG
T ss_pred ceEEEEeeeecCCCCceeeEEEEecCCCHHHHHHHH------HHHhcchhHHHHHHHHHhcCc
Confidence 4788877 789999999999999999976433322 2333 57888888777653
No 2
>1ybk_A Tetrabrachion; right hand coiled coil, protein binding; HET: BEQ; 1.45A {Staphylothermus marinus} PDB: 1fe6_A
Probab=15.68 E-value=2.7 Score=27.86 Aligned_cols=23 Identities=48% Similarity=0.691 Sum_probs=19.1
Q ss_pred EEEeeeeeeecccccccceeecc
Q 031795 13 VVYRLPVISYDSIHSAENLLYLK 35 (153)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~ 35 (153)
+||||-||--|-..|..||+-|.
T Consensus 11 ivyrltviiddryeslknlitlr 33 (52)
T 1ybk_A 11 IVYRLTVIIDDRYESLKNLITLR 33 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEEEEccHHHHHHHHHhhh
Confidence 58999999988888888887654
No 3
>1jb0_D Photosystem 1 reaction centre subunit II; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.187.1.1 PDB: 3pcq_D*
Probab=8.81 E-value=1.1e+02 Score=23.80 Aligned_cols=27 Identities=22% Similarity=0.524 Sum_probs=19.0
Q ss_pred EEeeeeeeecccccccceeeccCCCcc
Q 031795 14 VYRLPVISYDSIHSAENLLYLKNPTKT 40 (153)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (153)
||-+|.=--.-.+.-||||||--...-
T Consensus 38 vFEmPTGGAA~M~~G~NLlylARKEQc 64 (138)
T 1jb0_D 38 VFEMPTAGAAVMREGENLVYFARKEQC 64 (138)
T ss_dssp EEECTTSSEEEECSEEEEEEESSHHHH
T ss_pred heecCCCchhhhccCcceeEeecHHHH
Confidence 566676555667889999998654433
No 4
>3lk4_C CD2-associated protein; CAPZ, CD2AP, actin filaments, uncapping, actin-filament regulators, protein-protein comple, actin capping, actin- binding; 1.99A {Homo sapiens}
Probab=6.39 E-value=1.4e+02 Score=17.66 Aligned_cols=13 Identities=54% Similarity=0.792 Sum_probs=9.7
Q ss_pred eecccccccceee
Q 031795 21 SYDSIHSAENLLY 33 (153)
Q Consensus 21 ~~~~~~~~~~~~~ 33 (153)
.+|+|-++|||-.
T Consensus 2 ~fd~v~sseklsh 14 (29)
T 3lk4_C 2 NFDDIASSENLLH 14 (29)
T ss_dssp CSTTSCCCCCCCC
T ss_pred ccccccccccccC
Confidence 5788888888753
No 5
>1hym_B CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=5.76 E-value=1.9e+02 Score=16.42 Aligned_cols=10 Identities=30% Similarity=0.391 Sum_probs=7.2
Q ss_pred EEEeeeeeee
Q 031795 13 VVYRLPVISY 22 (153)
Q Consensus 13 ~~~~~~~~~~ 22 (153)
+|.+.|+|.|
T Consensus 16 ~V~~~P~iG~ 25 (26)
T 1hym_B 16 LVVSPPRIGX 25 (26)
T ss_dssp EEECCSBCC-
T ss_pred cEEECCcccC
Confidence 4678999877
No 6
>1oc7_A Cllulase, CEL6A, cellobiohydrolase II; cellulose degradation, cellulase, glycoside hydrolase family 6, processive mechanism; HET: NAG BGC SGC MA3; 1.11A {Humicola insolens} SCOP: c.6.1.1 PDB: 1oc5_A* 1oc6_A* 2bvw_A* 1ocb_A* 1ocj_A* 1ocn_A* 1bvw_A* 1gz1_A*
Probab=5.75 E-value=1.9e+02 Score=25.07 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=18.0
Q ss_pred CCCcccceEEEEeeeeeeeccccccc
Q 031795 4 GTPQKLSTVVVYRLPVISYDSIHSAE 29 (153)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (153)
|.|.++-.+|||.||=-.-...+|.-
T Consensus 77 ~~~~~~~~lVvY~lP~RDC~a~aS~G 102 (364)
T 1oc7_A 77 ANPQYAAQIVVYDLPDRDCAAAASNG 102 (364)
T ss_dssp CSSCEEEEEEECCCTTCSTTSSSCCC
T ss_pred CCCCceeEEEEeCCCCCCccccccCC
Confidence 45557888999999976554544543
No 7
>2wsc_D Photosystem I reaction center subunit II, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Spinacia oleracea} PDB: 2wse_D* 2wsf_D* 2o01_D* 3lw5_D*
Probab=5.49 E-value=1.4e+02 Score=24.58 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=19.6
Q ss_pred eeeeeeecccccccceeeccCCCcccccccc
Q 031795 16 RLPVISYDSIHSAENLLYLKNPTKTLGVREQ 46 (153)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (153)
-+|.=--.-.+..||||||-....-|.+..|
T Consensus 115 EmPTGGAAiM~~G~NLLylARKEQClALgtq 145 (212)
T 2wsc_D 115 EMPTGGAAIMREGPNLLKLARKEQCLALGTR 145 (212)
T ss_dssp CTTTTCCCCCCCSSCEEECSSTTTTSHHHHT
T ss_pred ecCCCcchhhccCcchheehhHHHHHHHHHh
Confidence 3333333345778999999877766655444
No 8
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=5.15 E-value=1.6e+02 Score=23.94 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=5.7
Q ss_pred cccccceeeccC--CCccccccc
Q 031795 25 IHSAENLLYLKN--PTKTLGVRE 45 (153)
Q Consensus 25 ~~~~~~~~~~~~--~~~~~~~~~ 45 (153)
-||.|||.|+.- |.+++||-.
T Consensus 9 ~~~~~~~~~~~~mm~~~~I~ilG 31 (403)
T 3k5i_A 9 HHSSENLYFQGHMWNSRKVGVLG 31 (403)
T ss_dssp ------------CCSCCEEEEEC
T ss_pred cccccceeEeccCCCCCEEEEEC
Confidence 478999866643 357787754
No 9
>2brq_C Integrin beta-7 subunit; structural protein, cytoskeleton/complex, actin-binding, cytoskeleton, immunoglobulin like, cell adhesion; HET: GSH; 2.10A {Homo sapiens}
Probab=4.54 E-value=2.4e+02 Score=16.11 Aligned_cols=14 Identities=36% Similarity=0.487 Sum_probs=8.6
Q ss_pred ccccceeeccCCCcc
Q 031795 26 HSAENLLYLKNPTKT 40 (153)
Q Consensus 26 ~~~~~~~~~~~~~~~ 40 (153)
|..||=|| |+|+.|
T Consensus 4 ~~~~NPLY-k~attt 17 (31)
T 2brq_C 4 KQDSNPLY-KSAITT 17 (31)
T ss_pred ccCCCCce-eCCccc
Confidence 45677777 455554
No 10
>4a1x_C CP5-46-A peptide; hydrolase-peptide complex, unmodified inhibitory peptides; 1.90A {Synthetic construct} PDB: 4a1t_C
Probab=4.14 E-value=3.4e+02 Score=15.55 Aligned_cols=17 Identities=41% Similarity=0.624 Sum_probs=13.1
Q ss_pred EEEeeeeeeeccccccc
Q 031795 13 VVYRLPVISYDSIHSAE 29 (153)
Q Consensus 13 ~~~~~~~~~~~~~~~~~ 29 (153)
.||-|---.||-||--.
T Consensus 6 lvylldgpgydpihcd~ 22 (26)
T 4a1x_C 6 LVYLLDGPGYDPIHCDX 22 (26)
T ss_pred EEEEecCCCCCceeccc
Confidence 57878777899999643
Done!