Query 031796
Match_columns 153
No_of_seqs 126 out of 1536
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 05:28:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031796.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031796hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00223 ADP-ribosylation fact 100.0 4E-33 8.8E-38 189.9 17.0 153 1-153 1-153 (181)
2 PTZ00133 ADP-ribosylation fact 100.0 4.6E-32 1E-36 184.8 16.8 152 1-152 1-152 (182)
3 KOG0084 GTPase Rab1/YPT1, smal 100.0 1.8E-32 3.9E-37 182.4 11.5 132 15-147 7-148 (205)
4 smart00177 ARF ARF-like small 100.0 5.3E-31 1.1E-35 178.6 15.8 141 13-153 9-149 (175)
5 KOG0070 GTP-binding ADP-ribosy 100.0 1.6E-31 3.5E-36 176.6 12.6 153 1-153 1-153 (181)
6 PF00025 Arf: ADP-ribosylation 100.0 7.7E-30 1.7E-34 172.9 16.7 149 5-153 1-151 (175)
7 KOG0071 GTP-binding ADP-ribosy 100.0 5.9E-30 1.3E-34 161.9 14.3 153 1-153 1-153 (180)
8 cd04149 Arf6 Arf6 subfamily. 100.0 4.9E-30 1.1E-34 172.8 14.8 139 13-151 5-143 (168)
9 KOG0092 GTPase Rab5/YPT51 and 100.0 1.5E-30 3.1E-35 172.8 11.6 135 15-150 3-147 (200)
10 cd04150 Arf1_5_like Arf1-Arf5- 100.0 2.2E-29 4.8E-34 168.2 15.2 135 18-152 1-135 (159)
11 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 1.2E-29 2.6E-34 168.7 12.4 137 13-149 18-164 (221)
12 KOG0098 GTPase Rab2, small G p 100.0 1.8E-29 4E-34 166.7 11.8 135 15-150 4-148 (216)
13 KOG0093 GTPase Rab3, small G p 100.0 5.1E-29 1.1E-33 158.9 12.0 135 15-150 19-163 (193)
14 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 3.6E-28 7.9E-33 164.5 16.7 145 6-150 4-148 (174)
15 smart00178 SAR Sar1p-like memb 100.0 9.5E-28 2.1E-32 163.8 16.5 144 5-149 4-149 (184)
16 KOG0078 GTP-binding protein SE 100.0 2.7E-28 5.8E-33 164.5 12.0 138 13-151 8-155 (207)
17 cd04161 Arl2l1_Arl13_like Arl2 100.0 1.4E-27 3E-32 160.7 15.5 131 19-149 1-131 (167)
18 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 1.6E-27 3.5E-32 160.0 15.5 129 19-149 1-130 (164)
19 cd04154 Arl2 Arl2 subfamily. 100.0 2.2E-27 4.7E-32 160.5 15.9 134 13-146 10-143 (173)
20 cd04158 ARD1 ARD1 subfamily. 100.0 2.1E-27 4.5E-32 160.0 15.7 127 19-145 1-127 (169)
21 KOG0087 GTPase Rab11/YPT3, sma 100.0 2.4E-28 5.3E-33 164.3 10.4 135 15-150 12-156 (222)
22 KOG0073 GTP-binding ADP-ribosy 100.0 2.3E-27 5E-32 153.6 14.3 147 7-153 5-153 (185)
23 cd01875 RhoG RhoG subfamily. 100.0 6.2E-28 1.3E-32 165.7 12.3 117 16-133 2-122 (191)
24 cd04102 RabL3 RabL3 (Rab-like3 100.0 2.1E-27 4.6E-32 163.9 14.9 133 18-150 1-170 (202)
25 cd04131 Rnd Rnd subfamily. Th 100.0 7.3E-28 1.6E-32 163.6 11.4 131 17-149 1-154 (178)
26 cd04126 Rab20 Rab20 subfamily. 100.0 2.7E-27 5.8E-32 165.4 14.2 114 18-132 1-114 (220)
27 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 9.7E-28 2.1E-32 163.4 11.6 133 15-149 3-158 (182)
28 cd04151 Arl1 Arl1 subfamily. 100.0 4.9E-27 1.1E-31 156.5 14.7 130 19-148 1-130 (158)
29 cd04120 Rab12 Rab12 subfamily. 100.0 6.7E-27 1.5E-31 161.6 15.1 130 18-148 1-141 (202)
30 cd04121 Rab40 Rab40 subfamily. 100.0 4.3E-27 9.4E-32 161.1 14.0 133 15-149 4-146 (189)
31 KOG0080 GTPase Rab18, small G 100.0 7E-28 1.5E-32 155.8 9.4 135 15-149 9-153 (209)
32 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 4.4E-27 9.5E-32 159.0 12.7 133 17-149 2-143 (172)
33 cd04157 Arl6 Arl6 subfamily. 99.9 1.8E-26 3.8E-31 154.0 14.9 129 19-147 1-133 (162)
34 cd04133 Rop_like Rop subfamily 99.9 4.9E-27 1.1E-31 159.2 12.3 130 18-149 2-152 (176)
35 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 3.6E-27 7.9E-32 164.8 11.7 132 17-149 1-154 (222)
36 cd00878 Arf_Arl Arf (ADP-ribos 99.9 2.2E-26 4.7E-31 153.2 15.0 128 19-146 1-128 (158)
37 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 4.8E-27 1E-31 165.1 12.1 133 15-149 11-166 (232)
38 cd04127 Rab27A Rab27a subfamil 99.9 1.7E-26 3.6E-31 156.8 14.2 133 16-148 3-155 (180)
39 cd01874 Cdc42 Cdc42 subfamily. 99.9 1.3E-26 2.8E-31 157.1 13.5 115 18-133 2-120 (175)
40 cd04175 Rap1 Rap1 subgroup. T 99.9 1.5E-26 3.3E-31 154.8 13.5 132 17-148 1-141 (164)
41 KOG0075 GTP-binding ADP-ribosy 99.9 2.6E-27 5.6E-32 151.0 9.0 142 11-152 14-156 (186)
42 PTZ00369 Ras-like protein; Pro 99.9 1.9E-26 4.1E-31 158.0 14.1 134 15-148 3-145 (189)
43 cd04136 Rap_like Rap-like subf 99.9 2.4E-26 5.2E-31 153.5 13.9 132 17-148 1-141 (163)
44 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 4.5E-26 9.8E-31 155.4 15.1 129 16-144 2-135 (183)
45 cd00879 Sar1 Sar1 subfamily. 99.9 8.7E-26 1.9E-30 154.6 16.5 134 14-147 16-149 (190)
46 cd04155 Arl3 Arl3 subfamily. 99.9 7.7E-26 1.7E-30 152.6 16.0 139 14-152 11-149 (173)
47 cd04156 ARLTS1 ARLTS1 subfamil 99.9 4.8E-26 1E-30 151.8 14.6 130 19-148 1-131 (160)
48 cd04122 Rab14 Rab14 subfamily. 99.9 3E-26 6.4E-31 153.8 13.6 131 17-148 2-142 (166)
49 KOG0079 GTP-binding protein H- 99.9 5E-27 1.1E-31 150.0 8.8 131 18-150 9-149 (198)
50 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 3.9E-26 8.5E-31 157.8 13.9 127 18-144 1-141 (201)
51 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 4.6E-26 9.9E-31 153.7 13.1 130 19-148 2-143 (170)
52 cd04176 Rap2 Rap2 subgroup. T 99.9 1E-25 2.2E-30 150.7 14.3 132 17-148 1-141 (163)
53 PLN03071 GTP-binding nuclear p 99.9 8.4E-26 1.8E-30 158.1 14.1 132 15-148 11-150 (219)
54 cd04119 RJL RJL (RabJ-Like) su 99.9 4.5E-26 9.7E-31 152.6 12.3 131 18-148 1-145 (168)
55 cd04145 M_R_Ras_like M-Ras/R-R 99.9 6.7E-26 1.5E-30 151.5 13.0 132 17-148 2-142 (164)
56 cd04138 H_N_K_Ras_like H-Ras/N 99.9 9.5E-26 2.1E-30 150.2 13.7 132 17-148 1-140 (162)
57 cd01865 Rab3 Rab3 subfamily. 99.9 6.9E-26 1.5E-30 152.0 13.0 130 18-148 2-141 (165)
58 cd04111 Rab39 Rab39 subfamily. 99.9 1.4E-25 3E-30 156.2 14.2 132 17-148 2-144 (211)
59 cd04115 Rab33B_Rab33A Rab33B/R 99.9 1.9E-25 4.1E-30 150.6 14.3 133 17-149 2-145 (170)
60 cd04117 Rab15 Rab15 subfamily. 99.9 3E-25 6.5E-30 148.4 15.0 130 18-148 1-140 (161)
61 smart00173 RAS Ras subfamily o 99.9 1.6E-25 3.5E-30 149.7 13.6 131 18-148 1-140 (164)
62 cd00877 Ran Ran (Ras-related n 99.9 2.8E-25 6E-30 149.4 14.6 115 18-134 1-120 (166)
63 PLN00023 GTP-binding protein; 99.9 3.3E-25 7.1E-30 160.6 15.7 134 13-146 17-190 (334)
64 cd04109 Rab28 Rab28 subfamily. 99.9 2.6E-25 5.6E-30 155.3 14.7 131 18-148 1-144 (215)
65 cd01871 Rac1_like Rac1-like su 99.9 9.1E-26 2E-30 152.8 11.6 114 18-132 2-119 (174)
66 cd04106 Rab23_lke Rab23-like s 99.9 3.2E-25 7E-30 148.0 13.9 130 18-149 1-142 (162)
67 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 2.5E-25 5.5E-30 149.2 13.4 131 17-148 2-142 (166)
68 cd04159 Arl10_like Arl10-like 99.9 6.6E-25 1.4E-29 145.3 15.1 129 20-148 2-131 (159)
69 cd01867 Rab8_Rab10_Rab13_like 99.9 1.9E-25 4.1E-30 150.1 12.2 132 16-148 2-143 (167)
70 cd04128 Spg1 Spg1p. Spg1p (se 99.9 3.5E-25 7.5E-30 151.0 13.6 112 18-131 1-117 (182)
71 cd04144 Ras2 Ras2 subfamily. 99.9 1.6E-25 3.5E-30 153.5 11.8 131 19-149 1-142 (190)
72 cd04132 Rho4_like Rho4-like su 99.9 3.2E-25 7E-30 151.5 13.1 127 18-145 1-141 (187)
73 PF00071 Ras: Ras family; Int 99.9 4.5E-25 9.8E-30 147.3 13.3 130 19-149 1-140 (162)
74 cd04160 Arfrp1 Arfrp1 subfamil 99.9 5.9E-25 1.3E-29 147.4 13.9 125 19-143 1-132 (167)
75 cd04110 Rab35 Rab35 subfamily. 99.9 4.1E-25 8.9E-30 152.6 13.4 132 15-148 4-145 (199)
76 cd01864 Rab19 Rab19 subfamily. 99.9 6.5E-25 1.4E-29 147.2 13.9 130 16-146 2-141 (165)
77 cd04125 RabA_like RabA-like su 99.9 3.8E-25 8.3E-30 151.3 12.9 130 18-148 1-140 (188)
78 KOG0095 GTPase Rab30, small G 99.9 1.1E-25 2.4E-30 144.2 9.3 117 16-133 6-127 (213)
79 cd01892 Miro2 Miro2 subfamily. 99.9 1.7E-24 3.7E-29 145.9 15.1 129 15-146 2-141 (169)
80 KOG0091 GTPase Rab39, small G 99.9 9E-26 2E-30 146.4 8.3 136 15-150 6-153 (213)
81 KOG0086 GTPase Rab4, small G p 99.9 2.1E-25 4.6E-30 143.3 9.8 134 15-149 7-150 (214)
82 cd04134 Rho3 Rho3 subfamily. 99.9 5.1E-25 1.1E-29 150.9 12.2 115 18-134 1-120 (189)
83 cd01860 Rab5_related Rab5-rela 99.9 6.4E-25 1.4E-29 146.6 12.5 129 17-146 1-139 (163)
84 cd04113 Rab4 Rab4 subfamily. 99.9 1.1E-24 2.3E-29 145.4 13.4 130 18-148 1-140 (161)
85 KOG0081 GTPase Rab27, small G 99.9 7.1E-27 1.5E-31 151.0 2.6 136 16-151 8-162 (219)
86 cd04112 Rab26 Rab26 subfamily. 99.9 1.2E-24 2.5E-29 149.4 13.4 130 18-148 1-141 (191)
87 cd04124 RabL2 RabL2 subfamily. 99.9 1.8E-24 4E-29 144.6 13.9 113 18-132 1-118 (161)
88 cd01861 Rab6 Rab6 subfamily. 99.9 1.5E-24 3.3E-29 144.6 13.4 128 18-146 1-138 (161)
89 cd04140 ARHI_like ARHI subfami 99.9 1.1E-24 2.4E-29 146.1 12.7 115 18-132 2-122 (165)
90 cd01868 Rab11_like Rab11-like. 99.9 2.3E-24 4.9E-29 144.4 14.1 131 17-148 3-143 (165)
91 cd04116 Rab9 Rab9 subfamily. 99.9 1.4E-24 3.1E-29 146.1 13.1 131 15-145 3-145 (170)
92 cd01866 Rab2 Rab2 subfamily. 99.9 1.6E-24 3.4E-29 145.8 13.2 131 17-148 4-144 (168)
93 cd01863 Rab18 Rab18 subfamily. 99.9 1.3E-24 2.8E-29 145.0 12.7 131 18-148 1-140 (161)
94 smart00175 RAB Rab subfamily o 99.9 4.4E-24 9.5E-29 142.6 14.5 130 18-148 1-140 (164)
95 PLN03118 Rab family protein; P 99.9 3.2E-24 7E-29 149.3 14.3 134 15-148 12-155 (211)
96 smart00174 RHO Rho (Ras homolo 99.9 1.3E-24 2.8E-29 146.7 12.0 111 20-132 1-116 (174)
97 PLN03110 Rab GTPase; Provision 99.9 3E-24 6.5E-29 150.0 14.1 133 15-148 10-152 (216)
98 cd04130 Wrch_1 Wrch-1 subfamil 99.9 2.5E-24 5.5E-29 145.5 12.8 113 18-132 1-118 (173)
99 KOG0394 Ras-related GTPase [Ge 99.9 5.3E-25 1.2E-29 145.3 8.9 135 15-149 7-157 (210)
100 cd04101 RabL4 RabL4 (Rab-like4 99.9 7E-24 1.5E-28 141.8 14.5 114 18-133 1-122 (164)
101 KOG0072 GTP-binding ADP-ribosy 99.9 3.3E-25 7.2E-30 140.9 7.4 153 1-153 1-154 (182)
102 cd04118 Rab24 Rab24 subfamily. 99.9 5.8E-24 1.3E-28 146.0 14.1 113 18-132 1-119 (193)
103 cd04143 Rhes_like Rhes_like su 99.9 4.9E-24 1.1E-28 151.4 13.9 126 18-143 1-140 (247)
104 cd01893 Miro1 Miro1 subfamily. 99.9 4.2E-24 9.2E-29 143.5 12.8 117 18-135 1-120 (166)
105 smart00176 RAN Ran (Ras-relate 99.9 4.3E-24 9.3E-29 147.4 12.8 124 23-148 1-132 (200)
106 cd04103 Centaurin_gamma Centau 99.9 7.1E-24 1.5E-28 141.5 13.4 109 18-131 1-112 (158)
107 cd01873 RhoBTB RhoBTB subfamil 99.9 2.4E-24 5.1E-29 148.2 11.2 129 17-149 2-175 (195)
108 cd04177 RSR1 RSR1 subgroup. R 99.9 6.3E-24 1.4E-28 142.8 12.9 116 18-133 2-121 (168)
109 cd04146 RERG_RasL11_like RERG/ 99.9 3.3E-24 7.2E-29 143.7 11.1 130 19-148 1-141 (165)
110 PLN03108 Rab family protein; P 99.9 8.6E-24 1.9E-28 147.1 13.1 132 16-148 5-146 (210)
111 KOG0074 GTP-binding ADP-ribosy 99.9 5E-24 1.1E-28 135.3 10.7 139 15-153 15-154 (185)
112 cd01862 Rab7 Rab7 subfamily. 99.9 1.5E-23 3.4E-28 141.0 13.4 115 18-132 1-123 (172)
113 cd04135 Tc10 TC10 subfamily. 99.9 1.6E-23 3.4E-28 141.4 13.3 115 18-133 1-119 (174)
114 cd04148 RGK RGK subfamily. Th 99.9 3.5E-23 7.7E-28 145.0 14.5 129 18-148 1-141 (221)
115 cd04123 Rab21 Rab21 subfamily. 99.9 5.7E-23 1.2E-27 136.7 14.3 115 18-133 1-120 (162)
116 cd04142 RRP22 RRP22 subfamily. 99.9 3.8E-23 8.1E-28 142.7 13.7 116 18-133 1-131 (198)
117 cd04139 RalA_RalB RalA/RalB su 99.9 2.7E-23 6E-28 138.6 12.5 131 18-148 1-140 (164)
118 cd00157 Rho Rho (Ras homology) 99.9 3.1E-23 6.7E-28 139.4 12.2 116 18-134 1-120 (171)
119 cd01870 RhoA_like RhoA-like su 99.9 2.4E-23 5.3E-28 140.6 11.5 116 17-133 1-120 (175)
120 cd04137 RheB Rheb (Ras Homolog 99.9 3.3E-23 7.1E-28 140.7 12.0 129 18-146 2-139 (180)
121 KOG0088 GTPase Rab21, small G 99.9 2.8E-24 6.1E-29 138.9 5.7 135 15-150 11-155 (218)
122 cd00154 Rab Rab family. Rab G 99.9 1.6E-22 3.4E-27 133.7 14.0 113 18-131 1-118 (159)
123 cd04105 SR_beta Signal recogni 99.9 8.2E-23 1.8E-27 141.5 13.0 123 19-141 2-132 (203)
124 KOG0097 GTPase Rab14, small G 99.9 1.7E-23 3.7E-28 133.2 8.3 135 14-149 8-152 (215)
125 PF08477 Miro: Miro-like prote 99.9 2.4E-23 5.2E-28 132.5 9.1 109 19-129 1-119 (119)
126 cd04147 Ras_dva Ras-dva subfam 99.9 1.5E-22 3.3E-27 139.7 13.1 114 19-132 1-118 (198)
127 cd00876 Ras Ras family. The R 99.9 3.2E-22 6.8E-27 132.9 13.9 128 19-146 1-137 (160)
128 PTZ00132 GTP-binding nuclear p 99.9 3.3E-22 7.3E-27 139.5 14.3 133 13-147 5-145 (215)
129 KOG0083 GTPase Rab26/Rab37, sm 99.9 1.4E-24 3.1E-29 136.7 1.2 129 21-150 1-140 (192)
130 KOG0393 Ras-related small GTPa 99.9 1.8E-23 3.9E-28 141.5 6.5 134 15-149 2-157 (198)
131 cd04114 Rab30 Rab30 subfamily. 99.9 1.1E-21 2.3E-26 131.8 15.0 118 15-133 5-127 (169)
132 KOG0395 Ras-related GTPase [Ge 99.9 1.4E-22 3.1E-27 139.1 10.9 133 16-148 2-143 (196)
133 cd04129 Rho2 Rho2 subfamily. 99.9 1.1E-21 2.3E-26 134.3 11.4 115 17-132 1-119 (187)
134 COG1100 GTPase SAR1 and relate 99.9 7.4E-21 1.6E-25 132.8 11.7 119 17-135 5-128 (219)
135 KOG0076 GTP-binding ADP-ribosy 99.9 1.8E-21 3.8E-26 127.6 6.7 143 3-145 3-153 (197)
136 cd01898 Obg Obg subfamily. Th 99.8 3.6E-20 7.8E-25 124.4 12.8 117 19-135 2-131 (170)
137 cd01890 LepA LepA subfamily. 99.8 4E-20 8.6E-25 125.3 12.7 124 18-146 1-150 (179)
138 TIGR00450 mnmE_trmE_thdF tRNA 99.8 9.6E-20 2.1E-24 138.7 15.6 125 15-146 201-337 (442)
139 TIGR00231 small_GTP small GTP- 99.8 1.6E-19 3.5E-24 118.9 14.0 117 17-134 1-124 (161)
140 cd01891 TypA_BipA TypA (tyrosi 99.8 1.2E-19 2.6E-24 124.8 13.5 112 17-133 2-132 (194)
141 cd04171 SelB SelB subfamily. 99.8 1.3E-19 2.9E-24 120.7 12.4 109 18-133 1-119 (164)
142 cd01897 NOG NOG1 is a nucleola 99.8 2.9E-19 6.2E-24 119.9 14.0 116 18-135 1-130 (168)
143 cd01878 HflX HflX subfamily. 99.8 2.4E-19 5.2E-24 124.1 12.0 119 15-135 39-170 (204)
144 KOG4252 GTP-binding protein [S 99.8 4.5E-21 9.7E-26 126.5 2.4 132 15-148 18-159 (246)
145 cd01879 FeoB Ferrous iron tran 99.8 5.6E-19 1.2E-23 117.1 12.5 120 22-148 1-135 (158)
146 PRK15494 era GTPase Era; Provi 99.8 8.2E-19 1.8E-23 129.9 13.9 114 15-133 50-175 (339)
147 TIGR02528 EutP ethanolamine ut 99.8 1.1E-19 2.3E-24 119.0 8.1 109 19-145 2-119 (142)
148 cd00882 Ras_like_GTPase Ras-li 99.8 3.8E-19 8.3E-24 116.0 10.7 113 22-135 1-119 (157)
149 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 6.9E-19 1.5E-23 117.9 12.0 110 19-133 2-117 (168)
150 PF02421 FeoB_N: Ferrous iron 99.8 7.7E-19 1.7E-23 116.0 11.7 124 18-148 1-139 (156)
151 PRK04213 GTP-binding protein; 99.8 6E-20 1.3E-24 126.8 6.4 126 15-145 7-159 (201)
152 PRK03003 GTP-binding protein D 99.8 1.6E-18 3.5E-23 133.5 14.4 114 15-133 36-161 (472)
153 COG2229 Predicted GTPase [Gene 99.8 1.8E-18 3.8E-23 114.7 12.3 129 14-146 7-149 (187)
154 cd04164 trmE TrmE (MnmE, ThdF, 99.8 3.2E-18 6.9E-23 113.1 13.6 111 18-135 2-124 (157)
155 cd00881 GTP_translation_factor 99.8 3E-18 6.5E-23 116.7 13.8 111 19-134 1-130 (189)
156 KOG0077 Vesicle coat complex C 99.8 1.3E-19 2.8E-24 118.0 6.5 135 13-147 16-150 (193)
157 TIGR03156 GTP_HflX GTP-binding 99.8 1.4E-18 3E-23 129.0 12.6 117 16-134 188-317 (351)
158 cd01881 Obg_like The Obg-like 99.8 9.4E-19 2E-23 118.0 10.6 115 22-136 1-138 (176)
159 PRK12299 obgE GTPase CgtA; Rev 99.8 3.2E-18 6.9E-23 126.3 14.0 117 18-134 159-287 (335)
160 PF09439 SRPRB: Signal recogni 99.8 3.7E-19 8.1E-24 119.9 7.6 122 16-138 2-132 (181)
161 TIGR02729 Obg_CgtA Obg family 99.8 4.1E-18 8.9E-23 125.5 13.4 123 18-140 158-295 (329)
162 TIGR00436 era GTP-binding prot 99.8 4.8E-18 1E-22 122.4 13.3 109 19-133 2-122 (270)
163 cd01894 EngA1 EngA1 subfamily. 99.8 4.4E-18 9.6E-23 112.5 12.1 120 21-145 1-132 (157)
164 PRK05291 trmE tRNA modificatio 99.8 4.5E-18 9.7E-23 130.1 13.1 112 15-133 213-336 (449)
165 cd04169 RF3 RF3 subfamily. Pe 99.8 2.3E-17 5E-22 118.5 14.9 126 17-147 2-155 (267)
166 cd04163 Era Era subfamily. Er 99.8 1.5E-17 3.3E-22 110.6 12.6 112 16-132 2-125 (168)
167 cd01889 SelB_euk SelB subfamil 99.8 1.7E-17 3.6E-22 114.0 12.4 111 18-133 1-135 (192)
168 PRK03003 GTP-binding protein D 99.8 1.6E-17 3.5E-22 128.0 13.6 113 16-133 210-337 (472)
169 PRK00093 GTP-binding protein D 99.8 1.7E-17 3.7E-22 126.8 13.5 110 18-132 2-123 (435)
170 cd01895 EngA2 EngA2 subfamily. 99.8 6.9E-17 1.5E-21 108.3 14.3 112 17-133 2-128 (174)
171 TIGR03594 GTPase_EngA ribosome 99.7 1.9E-17 4.1E-22 126.3 12.1 122 19-145 1-134 (429)
172 TIGR03598 GTPase_YsxC ribosome 99.7 2.2E-17 4.7E-22 112.2 11.0 114 14-133 15-144 (179)
173 cd04168 TetM_like Tet(M)-like 99.7 6.6E-17 1.4E-21 114.3 13.4 122 19-145 1-146 (237)
174 COG1160 Predicted GTPases [Gen 99.7 1.4E-17 3E-22 124.3 10.3 113 18-135 4-129 (444)
175 PRK12297 obgE GTPase CgtA; Rev 99.7 7.9E-17 1.7E-21 121.8 14.5 126 19-144 160-301 (424)
176 PRK11058 GTPase HflX; Provisio 99.7 4.8E-17 1E-21 123.4 13.0 115 18-133 198-324 (426)
177 PRK00089 era GTPase Era; Revie 99.7 6.6E-17 1.4E-21 117.7 12.8 112 16-132 4-127 (292)
178 TIGR01393 lepA GTP-binding pro 99.7 8.1E-17 1.7E-21 126.7 14.1 126 16-146 2-153 (595)
179 PRK12296 obgE GTPase CgtA; Rev 99.7 7E-17 1.5E-21 123.8 13.0 117 18-134 160-300 (500)
180 TIGR03594 GTPase_EngA ribosome 99.7 1.6E-16 3.4E-21 121.3 14.1 111 16-131 171-296 (429)
181 PRK00454 engB GTP-binding prot 99.7 9.6E-17 2.1E-21 110.2 11.6 119 10-134 17-151 (196)
182 TIGR00487 IF-2 translation ini 99.7 1.7E-16 3.7E-21 124.5 14.4 114 15-133 85-202 (587)
183 PRK09554 feoB ferrous iron tra 99.7 4E-16 8.7E-21 125.6 15.0 126 16-148 2-146 (772)
184 PRK05306 infB translation init 99.7 2E-16 4.2E-21 127.1 13.1 112 14-133 287-404 (787)
185 PRK12298 obgE GTPase CgtA; Rev 99.7 2.8E-16 6.1E-21 118.1 13.1 117 19-135 161-292 (390)
186 cd04167 Snu114p Snu114p subfam 99.7 3E-16 6.6E-21 109.4 12.4 109 18-131 1-136 (213)
187 PF01926 MMR_HSR1: 50S ribosom 99.7 9.1E-16 2E-20 97.2 13.6 103 19-127 1-116 (116)
188 PTZ00099 rab6; Provisional 99.7 6.6E-17 1.4E-21 109.6 8.7 103 45-148 9-120 (176)
189 PF00009 GTP_EFTU: Elongation 99.7 2.1E-16 4.6E-21 108.2 11.3 113 15-132 1-136 (188)
190 PRK09518 bifunctional cytidyla 99.7 3.6E-16 7.8E-21 125.7 14.2 114 15-133 273-398 (712)
191 KOG3883 Ras family small GTPas 99.7 2.7E-16 5.8E-21 101.5 10.5 120 15-134 7-134 (198)
192 cd00880 Era_like Era (E. coli 99.7 7.2E-16 1.6E-20 101.5 12.5 113 22-139 1-125 (163)
193 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 2.7E-16 5.9E-21 110.2 10.7 114 19-133 1-126 (232)
194 TIGR01394 TypA_BipA GTP-bindin 99.7 6.4E-16 1.4E-20 121.5 13.8 111 18-133 2-131 (594)
195 PRK09518 bifunctional cytidyla 99.7 4.8E-16 1E-20 125.0 13.2 119 16-139 449-582 (712)
196 COG1159 Era GTPase [General fu 99.7 2.3E-16 5E-21 112.3 10.0 115 16-135 5-131 (298)
197 cd01896 DRG The developmentall 99.7 8.4E-16 1.8E-20 108.5 12.7 80 19-98 2-91 (233)
198 PRK10218 GTP-binding protein; 99.7 9.8E-16 2.1E-20 120.5 14.2 115 15-134 3-136 (607)
199 COG1084 Predicted GTPase [Gene 99.7 7.7E-16 1.7E-20 110.7 12.3 125 16-143 167-305 (346)
200 KOG1707 Predicted Ras related/ 99.7 2.5E-16 5.4E-21 120.1 10.0 123 13-135 5-132 (625)
201 cd01885 EF2 EF2 (for archaea a 99.7 9.4E-16 2E-20 107.3 12.2 109 18-131 1-138 (222)
202 PRK05433 GTP-binding protein L 99.7 1.3E-15 2.7E-20 120.1 14.3 126 15-145 5-156 (600)
203 PRK00741 prfC peptide chain re 99.7 7.1E-16 1.5E-20 119.8 12.6 128 15-147 8-163 (526)
204 PRK00093 GTP-binding protein D 99.7 2.2E-15 4.7E-20 115.3 15.0 115 15-134 171-300 (435)
205 PRK15467 ethanolamine utilizat 99.7 4.5E-16 9.7E-21 103.8 9.7 112 19-145 3-120 (158)
206 TIGR00475 selB selenocysteine- 99.7 7.9E-16 1.7E-20 121.0 12.5 109 18-134 1-119 (581)
207 cd01886 EF-G Elongation factor 99.7 2.3E-15 5E-20 108.3 13.9 124 19-147 1-148 (270)
208 TIGR00437 feoB ferrous iron tr 99.7 8.6E-16 1.9E-20 120.9 12.4 118 24-148 1-133 (591)
209 cd04170 EF-G_bact Elongation f 99.7 1.3E-15 2.9E-20 109.7 12.5 122 19-145 1-146 (268)
210 cd04166 CysN_ATPS CysN_ATPS su 99.7 8.6E-16 1.9E-20 106.8 11.1 110 19-132 1-144 (208)
211 KOG0090 Signal recognition par 99.7 5.1E-16 1.1E-20 105.4 9.2 126 17-142 38-169 (238)
212 PRK12317 elongation factor 1-a 99.7 6.9E-16 1.5E-20 117.7 11.1 117 14-132 3-153 (425)
213 cd01888 eIF2_gamma eIF2-gamma 99.7 9.2E-16 2E-20 106.3 10.4 113 18-133 1-152 (203)
214 CHL00189 infB translation init 99.7 2E-15 4.3E-20 120.5 13.6 112 14-133 241-362 (742)
215 COG0486 ThdF Predicted GTPase 99.7 2.8E-15 6E-20 112.4 13.2 115 15-135 215-341 (454)
216 TIGR00491 aIF-2 translation in 99.7 1.3E-15 2.7E-20 119.5 11.8 109 16-132 3-135 (590)
217 TIGR00483 EF-1_alpha translati 99.7 9.1E-16 2E-20 117.0 10.3 117 14-132 4-155 (426)
218 PRK13351 elongation factor G; 99.7 2.5E-15 5.3E-20 120.6 13.2 126 15-145 6-155 (687)
219 cd01850 CDC_Septin CDC/Septin. 99.6 1.9E-15 4.1E-20 109.1 10.7 111 17-132 4-157 (276)
220 KOG0096 GTPase Ran/TC4/GSP1 (n 99.6 7.9E-16 1.7E-20 102.5 7.6 117 16-134 9-130 (216)
221 TIGR00503 prfC peptide chain r 99.6 6.6E-15 1.4E-19 114.5 13.8 128 15-147 9-164 (527)
222 cd04104 p47_IIGP_like p47 (47- 99.6 1.4E-15 3.1E-20 104.9 8.8 108 17-131 1-120 (197)
223 TIGR00484 EF-G translation elo 99.6 1.4E-14 3.1E-19 116.2 14.9 128 15-147 8-159 (689)
224 PRK04004 translation initiatio 99.6 5.4E-15 1.2E-19 116.2 11.6 110 14-131 3-136 (586)
225 cd01883 EF1_alpha Eukaryotic e 99.6 6.6E-15 1.4E-19 103.1 9.9 111 19-132 1-151 (219)
226 cd01884 EF_Tu EF-Tu subfamily. 99.6 1.2E-14 2.7E-19 100.0 10.8 111 17-132 2-132 (195)
227 COG0218 Predicted GTPase [Gene 99.6 1.5E-14 3.3E-19 97.9 10.5 128 11-146 18-167 (200)
228 cd00066 G-alpha G protein alph 99.6 2.3E-14 5E-19 105.4 11.8 86 47-132 147-242 (317)
229 TIGR03680 eif2g_arch translati 99.6 1.5E-14 3.3E-19 109.7 10.1 117 15-134 2-150 (406)
230 smart00275 G_alpha G protein a 99.6 4.4E-14 9.5E-19 104.8 11.8 86 47-132 170-265 (342)
231 cd01876 YihA_EngB The YihA (En 99.6 5.5E-14 1.2E-18 93.6 11.1 108 19-134 1-126 (170)
232 KOG1673 Ras GTPases [General f 99.6 4.7E-15 1E-19 96.0 5.4 116 14-131 17-137 (205)
233 COG0370 FeoB Fe2+ transport sy 99.6 7.2E-14 1.6E-18 108.9 12.8 126 16-148 2-142 (653)
234 COG1160 Predicted GTPases [Gen 99.6 9.5E-14 2.1E-18 104.0 12.7 113 16-133 177-304 (444)
235 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 9.2E-14 2E-18 95.7 11.8 115 18-134 1-132 (196)
236 PRK04000 translation initiatio 99.6 4.9E-14 1.1E-18 107.0 10.8 118 14-134 6-155 (411)
237 TIGR00485 EF-Tu translation el 99.6 1.3E-13 2.9E-18 104.2 13.0 115 14-133 9-143 (394)
238 PLN03126 Elongation factor Tu; 99.6 8.3E-14 1.8E-18 107.2 11.9 115 14-133 78-212 (478)
239 PRK12736 elongation factor Tu; 99.5 4.7E-14 1E-18 106.6 10.4 115 14-133 9-143 (394)
240 PF10662 PduV-EutP: Ethanolami 99.5 3.7E-14 8.1E-19 92.0 8.4 97 18-131 2-102 (143)
241 PRK05124 cysN sulfate adenylyl 99.5 1.3E-13 2.7E-18 106.4 12.7 122 6-132 16-174 (474)
242 cd04165 GTPBP1_like GTPBP1-lik 99.5 1.6E-13 3.4E-18 96.4 11.2 111 19-134 1-154 (224)
243 CHL00071 tufA elongation facto 99.5 8.7E-14 1.9E-18 105.7 10.4 115 14-133 9-143 (409)
244 PRK12735 elongation factor Tu; 99.5 1.9E-13 4.2E-18 103.4 12.2 114 15-133 10-143 (396)
245 PRK12739 elongation factor G; 99.5 2.1E-13 4.5E-18 109.6 12.8 126 15-145 6-155 (691)
246 TIGR00490 aEF-2 translation el 99.5 2.1E-13 4.5E-18 109.9 12.6 113 15-132 17-152 (720)
247 KOG1489 Predicted GTP-binding 99.5 1.3E-13 2.9E-18 98.8 10.0 127 18-144 197-340 (366)
248 PRK05506 bifunctional sulfate 99.5 1.4E-13 3.1E-18 109.6 11.1 124 5-132 12-171 (632)
249 PRK10512 selenocysteinyl-tRNA- 99.5 4.3E-13 9.4E-18 106.1 13.4 110 19-133 2-119 (614)
250 KOG4423 GTP-binding protein-li 99.5 3.5E-16 7.5E-21 104.0 -4.7 117 17-133 25-150 (229)
251 KOG1423 Ras-like GTPase ERA [C 99.5 8.2E-14 1.8E-18 99.6 6.9 116 14-133 69-200 (379)
252 TIGR02034 CysN sulfate adenyly 99.5 2.6E-13 5.7E-18 102.9 10.0 111 18-132 1-147 (406)
253 TIGR00991 3a0901s02IAP34 GTP-b 99.5 2.9E-12 6.2E-17 93.0 14.8 115 15-131 36-166 (313)
254 cd01853 Toc34_like Toc34-like 99.5 2.6E-12 5.5E-17 91.5 14.4 117 14-132 28-163 (249)
255 PRK00049 elongation factor Tu; 99.5 3.6E-13 7.8E-18 101.9 10.4 114 14-132 9-142 (396)
256 PLN03127 Elongation factor Tu; 99.5 9.5E-13 2.1E-17 100.8 12.7 114 14-132 58-191 (447)
257 PRK00007 elongation factor G; 99.5 1.8E-12 3.8E-17 104.3 13.5 127 14-145 7-157 (693)
258 PF04548 AIG1: AIG1 family; I 99.5 1.6E-12 3.5E-17 90.6 11.1 119 18-138 1-136 (212)
259 COG3596 Predicted GTPase [Gene 99.4 5.3E-13 1.2E-17 94.2 7.5 116 14-133 36-163 (296)
260 PRK12740 elongation factor G; 99.4 3E-12 6.4E-17 102.8 12.4 118 23-145 1-142 (668)
261 COG1163 DRG Predicted GTPase [ 99.4 1E-12 2.2E-17 94.7 8.6 82 18-99 64-155 (365)
262 KOG1191 Mitochondrial GTPase [ 99.4 3.3E-12 7.2E-17 96.3 11.2 119 15-133 266-404 (531)
263 PLN00043 elongation factor 1-a 99.4 3.2E-12 6.9E-17 98.0 10.3 113 14-131 4-158 (447)
264 PLN00116 translation elongatio 99.4 1.1E-11 2.3E-16 101.6 12.5 120 5-131 9-163 (843)
265 PTZ00141 elongation factor 1- 99.4 9E-12 2E-16 95.5 11.1 114 14-131 4-158 (446)
266 PTZ00416 elongation factor 2; 99.4 8.9E-12 1.9E-16 101.9 11.6 112 15-131 17-157 (836)
267 KOG0082 G-protein alpha subuni 99.3 9.9E-12 2.1E-16 91.4 10.0 87 47-133 181-277 (354)
268 COG0536 Obg Predicted GTPase [ 99.3 1.6E-11 3.5E-16 89.1 9.9 122 20-143 162-301 (369)
269 cd01882 BMS1 Bms1. Bms1 is an 99.3 2.7E-11 5.9E-16 85.2 10.9 111 14-133 36-148 (225)
270 COG2262 HflX GTPases [General 99.3 3.1E-11 6.8E-16 89.5 11.5 119 15-135 190-321 (411)
271 PF00735 Septin: Septin; Inte 99.3 1.3E-11 2.9E-16 89.3 9.2 114 17-136 4-160 (281)
272 PRK07560 elongation factor EF- 99.3 3.7E-11 7.9E-16 97.3 12.1 113 15-132 18-153 (731)
273 KOG1954 Endocytosis/signaling 99.3 3.4E-11 7.4E-16 88.4 10.6 123 14-143 55-233 (532)
274 KOG3886 GTP-binding protein [S 99.3 9E-12 1.9E-16 86.0 6.9 117 16-134 3-132 (295)
275 PF00350 Dynamin_N: Dynamin fa 99.3 5.6E-11 1.2E-15 79.7 10.1 63 62-128 102-168 (168)
276 KOG0462 Elongation factor-type 99.3 1E-10 2.2E-15 89.5 12.0 115 15-134 58-193 (650)
277 PF05049 IIGP: Interferon-indu 99.3 8.4E-12 1.8E-16 92.8 6.0 110 14-130 32-153 (376)
278 COG0481 LepA Membrane GTPase L 99.3 5.6E-11 1.2E-15 89.6 10.3 128 15-147 7-160 (603)
279 COG5256 TEF1 Translation elong 99.3 1.1E-10 2.4E-15 86.7 11.3 114 14-132 4-159 (428)
280 COG0532 InfB Translation initi 99.2 4.3E-11 9.2E-16 91.3 8.8 118 16-142 4-130 (509)
281 KOG1707 Predicted Ras related/ 99.2 1.9E-10 4.1E-15 88.5 11.8 131 12-147 420-560 (625)
282 cd01899 Ygr210 Ygr210 subfamil 99.2 4.4E-11 9.5E-16 87.9 8.2 77 20-96 1-111 (318)
283 KOG1532 GTPase XAB1, interacts 99.2 1.1E-10 2.3E-15 82.8 9.5 80 61-143 116-206 (366)
284 smart00010 small_GTPase Small 99.2 5.8E-11 1.3E-15 75.4 7.5 89 18-132 1-91 (124)
285 COG0480 FusA Translation elong 99.2 3.7E-10 8.1E-15 90.2 13.3 127 14-145 7-158 (697)
286 PRK09602 translation-associate 99.2 3.6E-10 7.9E-15 85.4 11.4 78 18-95 2-113 (396)
287 PF03029 ATP_bind_1: Conserved 99.2 2.7E-11 5.9E-16 85.7 4.6 68 62-133 92-171 (238)
288 COG4108 PrfC Peptide chain rel 99.2 4.8E-10 1E-14 83.9 11.2 129 15-148 10-166 (528)
289 PTZ00327 eukaryotic translatio 99.2 2.6E-10 5.7E-15 87.5 9.6 117 13-133 30-186 (460)
290 PRK13768 GTPase; Provisional 99.2 6.3E-11 1.4E-15 84.7 5.9 79 62-141 98-185 (253)
291 KOG1145 Mitochondrial translat 99.1 3.6E-10 7.8E-15 86.6 9.5 122 15-143 151-277 (683)
292 TIGR00993 3a0901s04IAP86 chlor 99.1 1.8E-09 4E-14 85.0 13.3 115 16-132 117-250 (763)
293 KOG1490 GTP-binding protein CR 99.1 1.5E-10 3.3E-15 87.8 6.0 118 15-134 166-297 (620)
294 COG2895 CysN GTPases - Sulfate 99.1 7.1E-10 1.5E-14 81.1 9.2 126 15-147 4-177 (431)
295 TIGR02836 spore_IV_A stage IV 99.1 1.4E-09 3.1E-14 81.6 11.0 128 16-146 16-211 (492)
296 COG1217 TypA Predicted membran 99.1 7.8E-10 1.7E-14 83.4 9.4 114 16-134 4-136 (603)
297 PRK09866 hypothetical protein; 99.1 3.4E-09 7.4E-14 83.4 12.7 68 62-132 231-303 (741)
298 smart00053 DYNc Dynamin, GTPas 99.1 4.3E-09 9.3E-14 74.5 11.5 68 61-133 125-207 (240)
299 PTZ00258 GTP-binding protein; 99.1 2.7E-09 5.8E-14 80.3 10.6 81 15-95 19-126 (390)
300 COG5019 CDC3 Septin family pro 99.0 1.9E-09 4.1E-14 79.2 9.1 117 15-136 21-180 (373)
301 cd01900 YchF YchF subfamily. 99.0 1.4E-09 3E-14 78.4 7.3 76 20-95 1-103 (274)
302 PRK09601 GTP-binding protein Y 99.0 3.9E-09 8.5E-14 78.6 8.6 78 18-95 3-107 (364)
303 PRK14845 translation initiatio 99.0 3E-09 6.5E-14 88.2 8.7 97 28-132 472-592 (1049)
304 KOG0468 U5 snRNP-specific prot 98.9 7.4E-09 1.6E-13 81.2 9.6 112 15-131 126-262 (971)
305 KOG2655 Septin family protein 98.9 7.6E-09 1.6E-13 76.4 9.2 117 17-138 21-178 (366)
306 cd04178 Nucleostemin_like Nucl 98.9 9.5E-09 2.1E-13 69.4 7.1 55 15-70 115-171 (172)
307 cd01858 NGP_1 NGP-1. Autoanti 98.9 1.2E-08 2.6E-13 67.8 7.5 55 16-70 101-156 (157)
308 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 8E-09 1.7E-13 67.5 6.4 52 19-71 85-138 (141)
309 COG5192 BMS1 GTP-binding prote 98.8 2.1E-08 4.5E-13 77.7 8.0 115 15-136 67-181 (1077)
310 KOG3887 Predicted small GTPase 98.8 2.7E-08 5.8E-13 69.6 7.8 114 17-133 27-150 (347)
311 COG4917 EutP Ethanolamine util 98.8 1.2E-08 2.6E-13 64.2 5.1 112 18-145 2-120 (148)
312 KOG3905 Dynein light intermedi 98.8 1.1E-07 2.4E-12 69.3 9.7 83 16-100 51-143 (473)
313 COG0012 Predicted GTPase, prob 98.7 8.3E-08 1.8E-12 71.0 8.7 79 17-95 2-108 (372)
314 KOG0099 G protein subunit Galp 98.7 4.5E-08 9.7E-13 69.3 7.0 85 48-132 189-283 (379)
315 KOG1547 Septin CDC10 and relat 98.7 6.6E-08 1.4E-12 67.7 7.4 119 17-140 46-206 (336)
316 cd01859 MJ1464 MJ1464. This f 98.7 5.9E-08 1.3E-12 64.4 6.9 56 15-70 99-155 (156)
317 cd01856 YlqF YlqF. Proteins o 98.7 4.9E-08 1.1E-12 65.9 6.5 56 15-71 113-170 (171)
318 KOG1486 GTP-binding protein DR 98.7 2.2E-07 4.8E-12 65.5 9.5 96 15-110 60-166 (364)
319 PF00503 G-alpha: G-protein al 98.7 9.7E-08 2.1E-12 72.4 8.3 86 47-132 221-317 (389)
320 KOG0458 Elongation factor 1 al 98.7 8.7E-08 1.9E-12 74.1 7.8 118 12-132 172-329 (603)
321 cd01855 YqeH YqeH. YqeH is an 98.7 4.5E-08 9.8E-13 67.1 5.7 54 16-70 126-189 (190)
322 KOG0085 G protein subunit Galp 98.7 1.1E-08 2.3E-13 71.2 2.2 87 47-133 185-281 (359)
323 PRK09435 membrane ATPase/prote 98.7 6.6E-08 1.4E-12 71.5 6.4 63 60-134 148-210 (332)
324 PRK09563 rbgA GTPase YlqF; Rev 98.7 9.4E-08 2E-12 69.7 7.1 57 15-72 119-177 (287)
325 KOG1144 Translation initiation 98.7 7.1E-08 1.5E-12 76.6 6.7 109 15-131 473-605 (1064)
326 TIGR03596 GTPase_YlqF ribosome 98.7 7.6E-08 1.7E-12 69.8 6.4 56 15-71 116-173 (276)
327 COG1161 Predicted GTPases [Gen 98.6 1.2E-07 2.6E-12 70.1 6.9 62 10-71 125-187 (322)
328 TIGR00092 GTP-binding protein 98.6 3.6E-07 7.8E-12 68.3 9.2 78 18-95 3-108 (368)
329 KOG1491 Predicted GTP-binding 98.6 1.7E-07 3.6E-12 68.5 7.0 81 15-95 18-125 (391)
330 KOG0464 Elongation factor G [T 98.6 3E-08 6.6E-13 74.3 2.7 128 16-148 36-187 (753)
331 cd01849 YlqF_related_GTPase Yl 98.6 4.2E-07 9.1E-12 60.3 7.4 54 14-70 97-154 (155)
332 TIGR00750 lao LAO/AO transport 98.6 1.1E-06 2.4E-11 64.5 10.2 64 60-135 126-189 (300)
333 COG0050 TufB GTPases - transla 98.6 4.4E-07 9.6E-12 65.3 7.7 129 15-147 10-165 (394)
334 PF05783 DLIC: Dynein light in 98.5 1.5E-06 3.3E-11 67.1 10.7 84 15-100 23-116 (472)
335 TIGR00157 ribosome small subun 98.5 3.7E-07 8.1E-12 65.1 6.6 58 72-133 24-82 (245)
336 KOG0467 Translation elongation 98.5 2.2E-07 4.7E-12 73.9 5.5 110 15-129 7-135 (887)
337 cd01851 GBP Guanylate-binding 98.5 5E-06 1.1E-10 58.6 11.8 84 16-99 6-106 (224)
338 TIGR03348 VI_IcmF type VI secr 98.5 5.2E-07 1.1E-11 76.8 7.5 110 20-131 114-256 (1169)
339 KOG2486 Predicted GTPase [Gene 98.5 1.1E-06 2.4E-11 62.8 7.6 114 15-133 134-263 (320)
340 COG3276 SelB Selenocysteine-sp 98.4 3.6E-06 7.8E-11 63.6 10.3 118 19-140 2-125 (447)
341 cd03112 CobW_like The function 98.4 1.5E-06 3.3E-11 57.9 6.9 63 61-130 87-158 (158)
342 KOG0410 Predicted GTP binding 98.4 7.3E-07 1.6E-11 65.0 5.2 115 17-133 178-309 (410)
343 KOG0461 Selenocysteine-specifi 98.4 5.2E-06 1.1E-10 61.2 9.3 111 15-131 5-135 (522)
344 PF03193 DUF258: Protein of un 98.3 7E-07 1.5E-11 59.4 4.2 24 18-41 36-59 (161)
345 PRK12288 GTPase RsgA; Reviewed 98.3 1.8E-06 3.9E-11 64.5 6.9 53 19-74 207-270 (347)
346 KOG3859 Septins (P-loop GTPase 98.3 6.9E-07 1.5E-11 63.9 4.4 118 16-138 41-196 (406)
347 PRK12289 GTPase RsgA; Reviewed 98.3 1.6E-06 3.6E-11 64.8 6.3 23 19-41 174-196 (352)
348 TIGR00157 ribosome small subun 98.3 3E-06 6.5E-11 60.5 6.9 63 5-74 111-184 (245)
349 KOG0448 Mitofusin 1 GTPase, in 98.3 1.4E-05 3E-10 63.3 10.8 119 9-133 101-276 (749)
350 KOG0447 Dynamin-like GTP bindi 98.2 2.7E-05 5.9E-10 60.7 10.8 79 62-143 413-506 (980)
351 KOG0705 GTPase-activating prot 98.2 1.8E-06 3.9E-11 66.8 4.2 112 15-131 28-142 (749)
352 TIGR01425 SRP54_euk signal rec 98.2 3.5E-05 7.6E-10 59.0 10.9 109 17-132 100-253 (429)
353 TIGR03597 GTPase_YqeH ribosome 98.2 3.7E-06 7.9E-11 63.2 5.5 55 17-72 154-215 (360)
354 COG1618 Predicted nucleotide k 98.2 2.3E-05 5E-10 51.9 8.2 25 15-39 3-27 (179)
355 COG1703 ArgK Putative periplas 98.2 1.2E-05 2.5E-10 58.3 7.4 75 61-147 144-219 (323)
356 PRK13796 GTPase YqeH; Provisio 98.1 9.2E-06 2E-10 61.2 6.8 55 16-71 159-220 (365)
357 cd01854 YjeQ_engC YjeQ/EngC. 98.1 1.2E-05 2.6E-10 58.7 7.0 25 18-42 162-186 (287)
358 PRK14722 flhF flagellar biosyn 98.1 8.4E-05 1.8E-09 56.0 11.6 118 16-133 136-296 (374)
359 PF03308 ArgK: ArgK protein; 98.1 4.9E-06 1.1E-10 59.2 4.6 108 15-134 27-183 (266)
360 PF00448 SRP54: SRP54-type pro 98.1 5.8E-05 1.3E-09 52.1 9.7 66 61-133 84-155 (196)
361 PRK10416 signal recognition pa 98.1 8.3E-05 1.8E-09 55.1 10.8 24 16-39 113-136 (318)
362 COG1162 Predicted GTPases [Gen 98.1 6.5E-06 1.4E-10 59.8 4.7 22 19-40 166-187 (301)
363 KOG1534 Putative transcription 98.1 4.8E-06 1.1E-10 57.4 3.6 23 17-39 3-25 (273)
364 KOG0465 Mitochondrial elongati 98.1 1.3E-05 2.8E-10 62.8 6.3 115 15-134 37-172 (721)
365 PRK14974 cell division protein 98.0 0.00012 2.7E-09 54.5 11.1 67 60-133 222-294 (336)
366 cd03115 SRP The signal recogni 98.0 0.00022 4.8E-09 48.0 11.5 80 60-146 82-168 (173)
367 TIGR00064 ftsY signal recognit 98.0 0.00024 5.3E-09 51.5 12.3 80 59-145 153-245 (272)
368 PRK00098 GTPase RsgA; Reviewed 98.0 1.5E-05 3.2E-10 58.5 5.4 26 17-42 164-189 (298)
369 PF05621 TniB: Bacterial TniB 98.0 9.2E-05 2E-09 54.0 9.1 112 5-128 49-190 (302)
370 PF09547 Spore_IV_A: Stage IV 98.0 0.00012 2.7E-09 55.6 9.7 23 17-39 17-39 (492)
371 COG3523 IcmF Type VI protein s 97.9 2.5E-05 5.3E-10 66.0 6.2 111 20-132 128-270 (1188)
372 cd00009 AAA The AAA+ (ATPases 97.9 0.00033 7.3E-09 44.9 10.5 35 6-40 8-42 (151)
373 PF02492 cobW: CobW/HypB/UreG, 97.9 4.9E-05 1.1E-09 51.6 6.3 68 61-134 85-157 (178)
374 COG5257 GCD11 Translation init 97.9 2.6E-05 5.6E-10 57.1 5.0 119 15-136 8-158 (415)
375 PF13401 AAA_22: AAA domain; P 97.9 1.8E-05 3.9E-10 50.6 3.7 97 17-127 4-125 (131)
376 cd01983 Fer4_NifH The Fer4_Nif 97.9 0.00024 5.3E-09 42.5 8.6 97 20-126 2-99 (99)
377 cd01857 HSR1_MMR1 HSR1/MMR1. 97.9 2.8E-05 6.1E-10 50.7 4.6 51 79-134 6-58 (141)
378 KOG1424 Predicted GTP-binding 97.8 1.9E-05 4.2E-10 60.8 4.0 55 17-72 314-370 (562)
379 PRK12289 GTPase RsgA; Reviewed 97.8 4.8E-05 1E-09 57.0 6.1 58 80-141 85-143 (352)
380 KOG1533 Predicted GTPase [Gene 97.8 3.1E-05 6.8E-10 54.3 4.7 69 61-133 97-178 (290)
381 PRK00771 signal recognition pa 97.8 0.00057 1.2E-08 52.7 11.5 23 16-38 94-116 (437)
382 PRK11889 flhF flagellar biosyn 97.8 0.00013 2.9E-09 55.3 7.8 23 16-38 240-262 (436)
383 KOG1487 GTP-binding protein DR 97.8 9E-05 1.9E-09 52.9 6.4 86 19-104 61-156 (358)
384 cd01858 NGP_1 NGP-1. Autoanti 97.8 3E-05 6.5E-10 51.5 4.0 60 80-142 4-63 (157)
385 COG5258 GTPBP1 GTPase [General 97.8 0.00017 3.7E-09 54.1 8.1 118 14-136 114-273 (527)
386 KOG0460 Mitochondrial translat 97.8 0.00017 3.6E-09 53.4 7.7 129 15-147 52-207 (449)
387 KOG4273 Uncharacterized conser 97.8 0.00016 3.4E-09 51.4 7.3 110 18-132 5-123 (418)
388 KOG1143 Predicted translation 97.8 0.0001 2.2E-09 55.1 6.5 116 17-137 167-322 (591)
389 COG0523 Putative GTPases (G3E 97.7 0.00045 9.9E-09 51.2 9.6 74 61-140 85-167 (323)
390 PRK13695 putative NTPase; Prov 97.7 0.00017 3.7E-09 48.7 6.9 22 18-39 1-22 (174)
391 PRK14721 flhF flagellar biosyn 97.7 0.00023 5.1E-09 54.5 8.3 24 16-39 190-213 (420)
392 PF06858 NOG1: Nucleolar GTP-b 97.7 4.9E-05 1.1E-09 41.5 3.2 44 84-129 13-58 (58)
393 cd01855 YqeH YqeH. YqeH is an 97.7 5.3E-05 1.2E-09 51.8 4.2 53 74-133 24-76 (190)
394 PRK12727 flagellar biosynthesi 97.7 0.00058 1.3E-08 53.6 10.0 111 16-133 349-499 (559)
395 COG1419 FlhF Flagellar GTP-bin 97.7 0.0004 8.7E-09 52.5 8.8 111 16-133 202-353 (407)
396 cd02038 FleN-like FleN is a me 97.7 0.00041 8.9E-09 45.1 7.8 106 21-131 4-110 (139)
397 cd01854 YjeQ_engC YjeQ/EngC. 97.7 0.0001 2.2E-09 53.8 5.4 50 80-133 74-124 (287)
398 PRK05703 flhF flagellar biosyn 97.7 0.00099 2.1E-08 51.3 10.8 67 60-133 299-372 (424)
399 PRK10867 signal recognition pa 97.6 0.0014 3.1E-08 50.5 11.2 21 17-37 100-120 (433)
400 PRK11537 putative GTP-binding 97.6 0.0003 6.5E-09 52.1 7.3 66 61-133 91-165 (318)
401 cd01859 MJ1464 MJ1464. This f 97.6 7.8E-05 1.7E-09 49.3 3.8 54 75-133 3-56 (156)
402 PRK08118 topology modulation p 97.6 5.3E-05 1.2E-09 50.9 3.0 23 18-40 2-24 (167)
403 cd02042 ParA ParA and ParB of 97.6 0.00072 1.6E-08 41.5 7.9 81 20-108 2-84 (104)
404 PRK00098 GTPase RsgA; Reviewed 97.6 9.9E-05 2.1E-09 54.2 4.5 47 81-131 77-124 (298)
405 TIGR02475 CobW cobalamin biosy 97.6 0.00039 8.3E-09 52.1 7.7 36 61-96 93-135 (341)
406 TIGR00959 ffh signal recogniti 97.6 0.0018 4E-08 49.8 11.5 79 61-146 183-268 (428)
407 PRK12723 flagellar biosynthesi 97.6 0.0026 5.7E-08 48.4 12.1 22 17-38 174-195 (388)
408 PF13207 AAA_17: AAA domain; P 97.6 6.4E-05 1.4E-09 47.4 3.1 22 19-40 1-22 (121)
409 PRK14723 flhF flagellar biosyn 97.6 0.00097 2.1E-08 54.5 10.3 22 18-39 186-207 (767)
410 PF13555 AAA_29: P-loop contai 97.6 7.7E-05 1.7E-09 41.6 2.9 20 19-38 25-44 (62)
411 COG0563 Adk Adenylate kinase a 97.6 6.2E-05 1.3E-09 51.1 3.0 23 18-40 1-23 (178)
412 PF13671 AAA_33: AAA domain; P 97.6 6.9E-05 1.5E-09 48.6 2.9 20 20-39 2-21 (143)
413 PF05673 DUF815: Protein of un 97.5 0.00089 1.9E-08 47.5 8.4 29 12-40 47-75 (249)
414 PRK07261 topology modulation p 97.5 7.9E-05 1.7E-09 50.3 3.1 22 18-39 1-22 (171)
415 PRK12724 flagellar biosynthesi 97.5 0.00083 1.8E-08 51.4 8.6 23 17-39 223-245 (432)
416 KOG2423 Nucleolar GTPase [Gene 97.5 6.3E-05 1.4E-09 56.6 2.5 68 4-72 294-363 (572)
417 KOG0469 Elongation factor 2 [T 97.5 0.00099 2.1E-08 51.8 8.5 112 15-131 17-163 (842)
418 PRK12726 flagellar biosynthesi 97.5 0.00098 2.1E-08 50.4 8.3 23 16-38 205-227 (407)
419 COG1126 GlnQ ABC-type polar am 97.5 0.00013 2.8E-09 50.7 3.3 24 18-41 29-52 (240)
420 PF05729 NACHT: NACHT domain 97.5 0.0011 2.5E-08 43.7 7.9 21 20-40 3-23 (166)
421 PF03266 NTPase_1: NTPase; In 97.5 0.00032 7E-09 47.2 5.1 22 19-40 1-22 (168)
422 KOG3929 Uncharacterized conser 97.4 0.00019 4.1E-09 51.2 3.8 90 8-99 36-134 (363)
423 PF00005 ABC_tran: ABC transpo 97.4 0.00015 3.3E-09 46.8 3.1 26 16-41 10-35 (137)
424 PRK06995 flhF flagellar biosyn 97.4 0.0017 3.6E-08 50.7 9.1 22 18-39 257-278 (484)
425 PF13521 AAA_28: AAA domain; P 97.4 9.6E-05 2.1E-09 49.3 2.1 22 19-40 1-22 (163)
426 PRK00411 cdc6 cell division co 97.4 0.0012 2.7E-08 50.1 8.3 27 14-40 52-78 (394)
427 PRK06731 flhF flagellar biosyn 97.4 0.0017 3.8E-08 47.0 8.4 23 17-39 75-97 (270)
428 KOG2484 GTPase [General functi 97.4 0.00011 2.3E-09 55.2 2.2 56 15-71 250-307 (435)
429 cd02019 NK Nucleoside/nucleoti 97.4 0.0002 4.4E-09 40.9 2.8 21 20-40 2-22 (69)
430 COG1136 SalX ABC-type antimicr 97.4 0.00017 3.7E-09 50.6 2.9 22 19-40 33-54 (226)
431 COG1116 TauB ABC-type nitrate/ 97.3 0.00018 4E-09 50.9 2.9 22 20-41 32-53 (248)
432 PRK12288 GTPase RsgA; Reviewed 97.3 0.0009 2E-08 50.2 6.7 49 82-134 118-166 (347)
433 cd01849 YlqF_related_GTPase Yl 97.3 0.0004 8.7E-09 46.0 4.3 44 86-134 1-45 (155)
434 PF00004 AAA: ATPase family as 97.3 0.00021 4.5E-09 45.5 2.8 21 20-40 1-21 (132)
435 cd01120 RecA-like_NTPases RecA 97.3 0.0018 4E-08 42.4 7.5 21 20-40 2-22 (165)
436 PRK06217 hypothetical protein; 97.3 0.00022 4.8E-09 48.6 3.0 23 18-40 2-24 (183)
437 smart00382 AAA ATPases associa 97.3 0.00029 6.3E-09 44.7 3.4 25 17-41 2-26 (148)
438 cd02036 MinD Bacterial cell di 97.3 0.0071 1.5E-07 40.6 10.2 80 62-147 64-146 (179)
439 PRK05480 uridine/cytidine kina 97.3 0.00027 5.9E-09 49.1 3.3 27 13-39 2-28 (209)
440 PRK10078 ribose 1,5-bisphospho 97.3 0.00025 5.5E-09 48.4 3.1 22 19-40 4-25 (186)
441 PF00437 T2SE: Type II/IV secr 97.3 0.00027 5.9E-09 51.0 3.4 26 15-40 125-150 (270)
442 PF13191 AAA_16: AAA ATPase do 97.3 0.00023 4.9E-09 48.1 2.9 29 11-39 18-46 (185)
443 cd03111 CpaE_like This protein 97.3 0.0023 5.1E-08 39.6 7.1 99 24-127 7-106 (106)
444 PF04665 Pox_A32: Poxvirus A32 97.3 0.00029 6.4E-09 50.0 3.3 27 14-40 10-36 (241)
445 COG1120 FepC ABC-type cobalami 97.3 0.00024 5.1E-09 50.9 2.9 21 19-39 30-50 (258)
446 cd01130 VirB11-like_ATPase Typ 97.3 0.00052 1.1E-08 46.9 4.4 33 7-40 16-48 (186)
447 TIGR01618 phage_P_loop phage n 97.3 0.00096 2.1E-08 46.8 5.8 25 15-39 10-34 (220)
448 TIGR00101 ureG urease accessor 97.2 0.00029 6.4E-09 48.7 3.1 24 17-40 1-24 (199)
449 cd00071 GMPK Guanosine monopho 97.2 0.0003 6.4E-09 45.8 2.9 21 20-40 2-22 (137)
450 PHA00729 NTP-binding motif con 97.2 0.00046 1E-08 48.5 4.0 33 8-40 8-40 (226)
451 TIGR02322 phosphon_PhnN phosph 97.2 0.00028 6.1E-09 47.7 2.8 22 19-40 3-24 (179)
452 cd01129 PulE-GspE PulE/GspE Th 97.2 0.0044 9.6E-08 44.8 8.9 32 9-40 72-103 (264)
453 COG1117 PstB ABC-type phosphat 97.2 0.0003 6.4E-09 49.0 2.7 20 18-37 34-53 (253)
454 TIGR03263 guanyl_kin guanylate 97.2 0.00034 7.3E-09 47.3 2.9 22 19-40 3-24 (180)
455 PF13238 AAA_18: AAA domain; P 97.2 0.00035 7.5E-09 44.3 2.8 21 20-40 1-21 (129)
456 KOG2485 Conserved ATP/GTP bind 97.2 0.00065 1.4E-08 49.6 4.3 57 15-71 141-206 (335)
457 PRK13833 conjugal transfer pro 97.2 0.0019 4.1E-08 48.0 6.8 25 16-40 143-167 (323)
458 PRK03839 putative kinase; Prov 97.2 0.0004 8.7E-09 47.1 3.1 22 19-40 2-23 (180)
459 PF07728 AAA_5: AAA domain (dy 97.2 0.00044 9.6E-09 44.8 3.1 21 19-39 1-21 (139)
460 COG3839 MalK ABC-type sugar tr 97.1 0.00035 7.6E-09 51.9 2.9 22 20-41 32-53 (338)
461 PRK14530 adenylate kinase; Pro 97.1 0.00047 1E-08 48.1 3.3 21 18-38 4-24 (215)
462 COG1121 ZnuC ABC-type Mn/Zn tr 97.1 0.00038 8.3E-09 49.7 2.9 21 19-39 32-52 (254)
463 cd03238 ABC_UvrA The excision 97.1 0.00045 9.7E-09 46.9 3.1 24 15-38 19-42 (176)
464 PRK13851 type IV secretion sys 97.1 0.00042 9.2E-09 51.8 3.1 26 15-40 160-185 (344)
465 PF01637 Arch_ATPase: Archaeal 97.1 0.00063 1.4E-08 47.4 3.9 36 6-41 9-44 (234)
466 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.1 0.00045 9.8E-09 48.2 3.1 23 18-40 31-53 (218)
467 cd00820 PEPCK_HprK Phosphoenol 97.1 0.00045 9.8E-09 42.9 2.7 21 18-38 16-36 (107)
468 PF03205 MobB: Molybdopterin g 97.1 0.00044 9.6E-09 45.2 2.8 22 19-40 2-23 (140)
469 PRK14532 adenylate kinase; Pro 97.1 0.00048 1E-08 47.0 3.1 22 18-39 1-22 (188)
470 cd03116 MobB Molybdenum is an 97.1 0.00043 9.3E-09 46.2 2.7 21 19-39 3-23 (159)
471 PRK14738 gmk guanylate kinase; 97.1 0.00058 1.3E-08 47.5 3.4 26 15-40 11-36 (206)
472 cd02023 UMPK Uridine monophosp 97.1 0.00044 9.5E-09 47.6 2.8 20 20-39 2-21 (198)
473 cd03222 ABC_RNaseL_inhibitor T 97.1 0.00048 1E-08 46.8 2.9 25 16-40 24-48 (177)
474 PRK14531 adenylate kinase; Pro 97.1 0.00055 1.2E-08 46.6 3.1 22 18-39 3-24 (183)
475 TIGR01360 aden_kin_iso1 adenyl 97.1 0.00049 1.1E-08 46.7 2.8 21 18-38 4-24 (188)
476 cd03226 ABC_cobalt_CbiO_domain 97.1 0.00054 1.2E-08 47.4 3.1 23 18-40 27-49 (205)
477 TIGR01166 cbiO cobalt transpor 97.1 0.0005 1.1E-08 47.0 2.9 23 18-40 19-41 (190)
478 cd01131 PilT Pilus retraction 97.1 0.00048 1E-08 47.6 2.8 21 20-40 4-24 (198)
479 cd03225 ABC_cobalt_CbiO_domain 97.1 0.00049 1.1E-08 47.8 2.9 23 18-40 28-50 (211)
480 TIGR00235 udk uridine kinase. 97.1 0.00057 1.2E-08 47.5 3.2 25 15-39 4-28 (207)
481 PTZ00088 adenylate kinase 1; P 97.1 0.0006 1.3E-08 48.2 3.3 24 16-39 5-28 (229)
482 KOG0780 Signal recognition par 97.1 0.0014 3E-08 49.4 5.2 51 59-109 182-238 (483)
483 cd04178 Nucleostemin_like Nucl 97.1 0.00057 1.2E-08 46.2 3.0 52 86-142 1-54 (172)
484 TIGR02673 FtsE cell division A 97.1 0.00058 1.3E-08 47.5 3.1 23 18-40 29-51 (214)
485 TIGR00960 3a0501s02 Type II (G 97.1 0.00057 1.2E-08 47.6 3.1 23 18-40 30-52 (216)
486 cd03292 ABC_FtsE_transporter F 97.0 0.00059 1.3E-08 47.4 3.1 23 18-40 28-50 (214)
487 cd03269 ABC_putative_ATPase Th 97.0 0.0006 1.3E-08 47.3 3.1 23 18-40 27-49 (210)
488 cd03262 ABC_HisP_GlnQ_permease 97.0 0.0006 1.3E-08 47.4 3.1 24 18-41 27-50 (213)
489 cd03261 ABC_Org_Solvent_Resist 97.0 0.00059 1.3E-08 48.2 3.1 23 18-40 27-49 (235)
490 PF13479 AAA_24: AAA domain 97.0 0.00052 1.1E-08 47.9 2.8 23 15-37 1-23 (213)
491 cd03110 Fer4_NifH_child This p 97.0 0.0085 1.8E-07 40.5 8.7 84 59-149 91-176 (179)
492 PRK04195 replication factor C 97.0 0.00074 1.6E-08 52.9 3.9 24 17-40 39-62 (482)
493 TIGR00554 panK_bact pantothena 97.0 0.00094 2E-08 48.8 4.2 31 8-38 53-83 (290)
494 cd03264 ABC_drug_resistance_li 97.0 0.00056 1.2E-08 47.5 2.9 22 19-40 27-48 (211)
495 PRK13949 shikimate kinase; Pro 97.0 0.0006 1.3E-08 45.9 3.0 21 19-39 3-23 (169)
496 PRK14737 gmk guanylate kinase; 97.0 0.0006 1.3E-08 46.7 2.9 23 18-40 5-27 (186)
497 PRK01889 GTPase RsgA; Reviewed 97.0 0.00066 1.4E-08 51.1 3.4 52 19-70 197-256 (356)
498 cd03259 ABC_Carb_Solutes_like 97.0 0.00064 1.4E-08 47.3 3.1 23 18-40 27-49 (213)
499 cd03293 ABC_NrtD_SsuB_transpor 97.0 0.00057 1.2E-08 47.8 2.9 24 18-41 31-54 (220)
500 TIGR03608 L_ocin_972_ABC putat 97.0 0.00065 1.4E-08 47.0 3.1 23 18-40 25-47 (206)
No 1
>PLN00223 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=4e-33 Score=189.89 Aligned_cols=153 Identities=100% Similarity=1.461 Sum_probs=136.3
Q ss_pred CchhHHHHHhhhcccCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHH
Q 031796 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (153)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 80 (153)
||..++.+++..++.+.+||+++|+.+||||||++++..+.+..+.||.+.+...++...+.+.+||+||+++++..+..
T Consensus 1 m~~~~~~~~~~~~~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~ 80 (181)
T PLN00223 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
T ss_pred CchHHHHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHH
Confidence 78778888887778888999999999999999999998887777778888888888888899999999999999999999
Q ss_pred hhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCCCccccCCC
Q 031796 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153 (153)
Q Consensus 81 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~ 153 (153)
+++++|++++|||+++.+++.+...++...+.....+++|+++|+||+|+++..+.+++++.+++..+..+.|
T Consensus 81 ~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~ 153 (181)
T PLN00223 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153 (181)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCce
Confidence 9999999999999999999999988888887765556899999999999998888899999999887655543
No 2
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=4.6e-32 Score=184.85 Aligned_cols=152 Identities=80% Similarity=1.266 Sum_probs=133.8
Q ss_pred CchhHHHHHhhhcccCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHH
Q 031796 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (153)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 80 (153)
||..+..+++....++.+||+++|+++||||||++++..+.+..+.||.+.+...++...+.+.+||+||++++...+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~ 80 (182)
T PTZ00133 1 MGLWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRH 80 (182)
T ss_pred CchHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 77778888888888889999999999999999999998877777778888888778888899999999999999999999
Q ss_pred hhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCCCccccCC
Q 031796 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH 152 (153)
Q Consensus 81 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~~~~~~~~ 152 (153)
+++++|++++|+|+++++++.....++...+......++|+++|+||.|+++.....++++.+++..+.+++
T Consensus 81 ~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~ 152 (182)
T PTZ00133 81 YYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRN 152 (182)
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCc
Confidence 999999999999999999999998888888765444578999999999998877778888999887665544
No 3
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-32 Score=182.44 Aligned_cols=132 Identities=26% Similarity=0.493 Sum_probs=115.6
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEEE----EEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~~----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
...+||+++|++|||||+|+.||.++.|+. +..|+++++.. +++..+++++|||+||++|+++..++++++|++|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 567999999999999999999999999984 46788887754 3345689999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC-----CCHhHHHHHhCCCc
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHS 147 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~-----~~~~~~~~~~~~~~ 147 (153)
+|||+++.+||..+..|+.++-+ ....+.|.++||||+|+.++ +++++++.+.+.+.
T Consensus 87 ~vyDiT~~~SF~~v~~Wi~Ei~~-~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~ 148 (205)
T KOG0084|consen 87 FVYDITKQESFNNVKRWIQEIDR-YASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPI 148 (205)
T ss_pred EEEEcccHHHhhhHHHHHHHhhh-hccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcc
Confidence 99999999999999999998844 44567899999999999865 35778999999883
No 4
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.98 E-value=5.3e-31 Score=178.58 Aligned_cols=141 Identities=89% Similarity=1.363 Sum_probs=123.3
Q ss_pred cccCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEE
Q 031796 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (153)
.+.+.+||+++|++|||||||++++..+.+..+.||.+.....+....+.+.+||+||++.+...+..+++++|++++|+
T Consensus 9 ~~~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~ 88 (175)
T smart00177 9 FGNKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVV 88 (175)
T ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEE
Confidence 44667999999999999999999998777766678888887777788899999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCCCccccCCC
Q 031796 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~ 153 (153)
|+++++++.+...++...+......++|+++|+||+|+.+....+++.+.+++....+++|
T Consensus 89 D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~ 149 (175)
T smart00177 89 DSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNW 149 (175)
T ss_pred ECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcE
Confidence 9999999999999999887665446799999999999988777888999888876655543
No 5
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.6e-31 Score=176.60 Aligned_cols=153 Identities=84% Similarity=1.314 Sum_probs=148.1
Q ss_pred CchhHHHHHhhhcccCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHH
Q 031796 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (153)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 80 (153)
||..++++++..+..++.+|+++|--++||||+++++...+...+.||++.+...+.+..+++.+||..|+++++..|..
T Consensus 1 MG~~~s~~~~~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~ 80 (181)
T KOG0070|consen 1 MGLIFSKLFSGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKH 80 (181)
T ss_pred CcchhhhhhhhccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhh
Confidence 78889999998999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred hhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCCCccccCCC
Q 031796 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153 (153)
Q Consensus 81 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~ 153 (153)
|+++.+++|||+|.+|.+.+.+....+..++.+......|+++.+||.|++++.++.++.+.+++..+..++|
T Consensus 81 Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w 153 (181)
T KOG0070|consen 81 YFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNW 153 (181)
T ss_pred hccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCc
Confidence 9999999999999999999999999999999998888999999999999999999999999999999999988
No 6
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.97 E-value=7.7e-30 Score=172.87 Aligned_cols=149 Identities=56% Similarity=1.029 Sum_probs=137.2
Q ss_pred HHHHHhhhcc-cCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhc
Q 031796 5 FTKLFSRLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ 83 (153)
Q Consensus 5 ~~~~~~~~~~-~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 83 (153)
|++++++... .+..||+++|+.+|||||+++++.........||.+.+...+...+..+.+||.+|+..++..|..+++
T Consensus 1 ~~~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~ 80 (175)
T PF00025_consen 1 FSSVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQ 80 (175)
T ss_dssp HHHHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHT
T ss_pred CHHHHHHhcccCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeecc
Confidence 4677777776 888999999999999999999999888778899999999999999999999999999999999999999
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCCCccc-cCCC
Q 031796 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-QRHW 153 (153)
Q Consensus 84 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~~~~~-~~~~ 153 (153)
++|+++||+|.++.+.+.+....+..++......+.|+++++||+|++++...+++.+.+++..+. .+.|
T Consensus 81 ~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~ 151 (175)
T PF00025_consen 81 NADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPW 151 (175)
T ss_dssp TESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCE
T ss_pred ccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCce
Confidence 999999999999999999999999999988777899999999999999999999999999999886 5543
No 7
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.9e-30 Score=161.87 Aligned_cols=153 Identities=71% Similarity=1.198 Sum_probs=147.8
Q ss_pred CchhHHHHHhhhcccCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHH
Q 031796 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (153)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 80 (153)
||-.|++.+.+.+..+.++|+.+|-.++||||++..+.-.+...+.||+++++.+++++..++++||..|++..+..|..
T Consensus 1 Mgn~~sk~~~k~f~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrh 80 (180)
T KOG0071|consen 1 MGNYMSKLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRH 80 (180)
T ss_pred CcchHHHHHHHHhCcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHh
Confidence 77788999999999999999999999999999999999888888899999999999999999999999999999999999
Q ss_pred hhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCCCccccCCC
Q 031796 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153 (153)
Q Consensus 81 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~ 153 (153)
|+....++|||+|.++.+..++....+..++++....+.|+++.+||.|++++..++++...+++..+++++|
T Consensus 81 Yy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W 153 (180)
T KOG0071|consen 81 YYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNW 153 (180)
T ss_pred hccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998
No 8
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=4.9e-30 Score=172.78 Aligned_cols=139 Identities=76% Similarity=1.237 Sum_probs=119.5
Q ss_pred cccCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEE
Q 031796 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (153)
++.+.+||+++|+++||||||++++..+.+....||.+.....+....+.+.+||+||++++...+..+++++|++++||
T Consensus 5 ~~~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~ 84 (168)
T cd04149 5 FGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV 84 (168)
T ss_pred cCCCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence 34567999999999999999999998877776678888877777778899999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCCCccccC
Q 031796 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQR 151 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~~~~~~~ 151 (153)
|++++.++.+...++...+......+.|+++|+||+|+.+....+++.+.+++..+..+
T Consensus 85 D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~ 143 (168)
T cd04149 85 DSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDR 143 (168)
T ss_pred eCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCC
Confidence 99999999999999988877654467899999999999877677778777776655443
No 9
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.5e-30 Score=172.75 Aligned_cols=135 Identities=22% Similarity=0.437 Sum_probs=118.8
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEEEEEE--E--cCeEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVE--Y--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~~~~~--~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
...+|++++|+.++|||||+.||..++|.+. .+|++-.+.+.. . ..+++.||||+|+++|.++.+.|+|+++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 4679999999999999999999999999875 788887765433 3 3489999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC-----CCHhHHHHHhCCCcccc
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLRQ 150 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~-----~~~~~~~~~~~~~~~~~ 150 (153)
+|||+++.+||...+.|+..+-++.. +++-+.+||||+|+.+. ++++.+++..|+.+|+.
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ET 147 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFET 147 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEE
Confidence 99999999999999999999866655 78889999999999873 35888999999999875
No 10
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=2.2e-29 Score=168.15 Aligned_cols=135 Identities=93% Similarity=1.381 Sum_probs=116.3
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCc
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 97 (153)
+||+++|.++||||||++++..+.+....||.+.....+....+.+.+||+||++++...+..+++++|++++|||++++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~ 80 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH
Confidence 58999999999999999999877777677888887777788889999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCCCccccCC
Q 031796 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH 152 (153)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~~~~~~~~ 152 (153)
.++.....++..++......+.|+++++||+|+.+....+++.+.+++..+.++.
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~ 135 (159)
T cd04150 81 ERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRN 135 (159)
T ss_pred HHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCC
Confidence 9999999988888765444578999999999998766666777777776554443
No 11
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.2e-29 Score=168.68 Aligned_cols=137 Identities=20% Similarity=0.406 Sum_probs=118.1
Q ss_pred cccCccEEEEEcCCCCCHHHHHHhHhcCCcc-cccCceeeEEEE--EEE--cCeEEEEEEcCCCCCchhcHHHhhcCCCE
Q 031796 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (153)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 87 (153)
...+.+|++++|+.+|||||||+||.-+.|. ++.+|+++++.. +.. ..+++++|||+|||+|+++.+.|++++.+
T Consensus 18 ~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~v 97 (221)
T KOG0094|consen 18 APLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 97 (221)
T ss_pred ccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeE
Confidence 3456699999999999999999999999887 557899988754 333 44899999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCccc
Q 031796 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSLR 149 (153)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~~ 149 (153)
+++|||+++..||.....|+...........+.+++||||.||.+.. +.+..+++++..+.+
T Consensus 98 aviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~e 164 (221)
T KOG0094|consen 98 AVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIE 164 (221)
T ss_pred EEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEE
Confidence 99999999999999999999999888776678999999999998753 456677788775543
No 12
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.8e-29 Score=166.66 Aligned_cols=135 Identities=21% Similarity=0.398 Sum_probs=119.6
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEEE----EEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~~----~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
...+|++++|+.|||||+|+.+|....|.+. ..|+++++. +++...+++++|||.|++.|++.+.++++.+.++|
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 4568999999999999999999999998754 568888874 45556799999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC-----CCHhHHHHHhCCCcccc
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLRQ 150 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~-----~~~~~~~~~~~~~~~~~ 150 (153)
+|||+++.++|..+..|+.++.++. .+++.++++|||+|+... ++.+.++++.||.+++.
T Consensus 84 LVydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmET 148 (216)
T KOG0098|consen 84 LVYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMET 148 (216)
T ss_pred EEEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehh
Confidence 9999999999999999999997664 478999999999999753 46889999999999854
No 13
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.1e-29 Score=158.88 Aligned_cols=135 Identities=20% Similarity=0.487 Sum_probs=117.1
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEEEEEEE----cCeEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
...+|++++|+..+|||||+.++.+..|... ..|.++++..-+. +.+++++|||+|+++|+.+...++++++++|
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi 98 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence 4557999999999999999999999988744 5577776643322 4489999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC-----CCHhHHHHHhCCCcccc
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLRQ 150 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~-----~~~~~~~~~~~~~~~~~ 150 (153)
++||++|.+||..++.|...+ ....+.+.|+|+||||||+.++ +....+++++|+.+|+.
T Consensus 99 LmyDitNeeSf~svqdw~tqI-ktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEt 163 (193)
T KOG0093|consen 99 LMYDITNEESFNSVQDWITQI-KTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFET 163 (193)
T ss_pred EEEecCCHHHHHHHHHHHHHh-eeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhh
Confidence 999999999999999998887 5567789999999999999865 45788999999999875
No 14
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.96 E-value=3.6e-28 Score=164.50 Aligned_cols=145 Identities=54% Similarity=0.940 Sum_probs=122.5
Q ss_pred HHHHhhhcccCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCC
Q 031796 6 TKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNT 85 (153)
Q Consensus 6 ~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (153)
.+.++.-+..+.+||+++|++++|||||++++..+.+....||.+.....+......+.+||+||++.+...+..+++++
T Consensus 4 ~~~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 83 (174)
T cd04153 4 SSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNT 83 (174)
T ss_pred hHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcC
Confidence 34444333456799999999999999999999988887777888888888888889999999999999999999999999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCCCcccc
Q 031796 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ 150 (153)
Q Consensus 86 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~~~~~~ 150 (153)
|++++|+|+++++++.....++..++......+.|+++++||+|+.+....+++.+.++.....+
T Consensus 84 d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~ 148 (174)
T cd04153 84 DAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRD 148 (174)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccC
Confidence 99999999999999988888888887665556799999999999987666777888887655443
No 15
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.96 E-value=9.5e-28 Score=163.84 Aligned_cols=144 Identities=35% Similarity=0.653 Sum_probs=123.6
Q ss_pred HHHHHhhhcc--cCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhh
Q 031796 5 FTKLFSRLFA--KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF 82 (153)
Q Consensus 5 ~~~~~~~~~~--~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 82 (153)
|.++++ ... .+.++|+++|.+|+|||||++++.+.++....||.......+...+.++.+||+||++.++..+..++
T Consensus 4 ~~~~~~-~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~ 82 (184)
T smart00178 4 FYDILA-SLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYF 82 (184)
T ss_pred HHHHHH-HhccccccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHh
Confidence 455666 443 77799999999999999999999988776556777777677777889999999999999999999999
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCCCccc
Q 031796 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR 149 (153)
Q Consensus 83 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~~~~~ 149 (153)
+++|++++|+|+++++++.....++..++......+.|+++|+||+|++.....+++++.+++....
T Consensus 83 ~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~ 149 (184)
T smart00178 83 PEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTT 149 (184)
T ss_pred CCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCccc
Confidence 9999999999999999998888888887765555679999999999999888889999999887653
No 16
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.7e-28 Score=164.47 Aligned_cols=138 Identities=22% Similarity=0.455 Sum_probs=117.7
Q ss_pred cccCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEEEE--EEE--cCeEEEEEEcCCCCCchhcHHHhhcCCCE
Q 031796 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (153)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 87 (153)
....-+|++++|+++||||+++.+|..+.|... ..|+++.+.. +.. ..+.+++|||+||++|+.+...|++.+++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 345679999999999999999999999988754 5677777643 333 44789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC-----CCHhHHHHHhCCCccccC
Q 031796 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLRQR 151 (153)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~-----~~~~~~~~~~~~~~~~~~ 151 (153)
+++|||+++..||..+..|+..+.++ .....|.++||||+|+..+ +..+.+|+++|..+++-.
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~-a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtS 155 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEH-ASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETS 155 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhh-CCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEcc
Confidence 99999999999999999977777554 4458999999999999874 358889999999998753
No 17
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.96 E-value=1.4e-27 Score=160.70 Aligned_cols=131 Identities=37% Similarity=0.630 Sum_probs=115.5
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcc
Q 031796 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 98 (153)
+|+++|++|||||||++++.+.....+.||.+.....+.....++.+||+||++.++..+..+++++|++++|||+++..
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~ 80 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD 80 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh
Confidence 48999999999999999998873335577888877788888899999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCCCccc
Q 031796 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR 149 (153)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~~~~~ 149 (153)
++.+...++..++......+.|+++|+||+|+.+.....++.+.+++..+.
T Consensus 81 s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~ 131 (167)
T cd04161 81 RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLV 131 (167)
T ss_pred HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCccccc
Confidence 999999999988766555689999999999999988888888888887764
No 18
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.96 E-value=1.6e-27 Score=159.95 Aligned_cols=129 Identities=41% Similarity=0.723 Sum_probs=111.8
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCCcc-cccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCc
Q 031796 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 97 (153)
.|+++|+.|||||||++++.+..+. ...||.+.....+.....++.+||+||++.+...+..+++++|++++|||.+++
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~ 80 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADS 80 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCH
Confidence 3789999999999999999988765 346787777777788889999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCCCccc
Q 031796 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR 149 (153)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~~~~~ 149 (153)
.++.....|+..+.... +++|+++|+||+|+..+....++.+.+++..+.
T Consensus 81 ~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~ 130 (164)
T cd04162 81 ERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIA 130 (164)
T ss_pred HHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhc
Confidence 99999988888876543 589999999999998887777777777776663
No 19
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.96 E-value=2.2e-27 Score=160.46 Aligned_cols=134 Identities=51% Similarity=0.886 Sum_probs=113.8
Q ss_pred cccCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEE
Q 031796 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (153)
...+.++++++|++|||||||++++.+..+....+|.+.....+......+.+||+||++.+...+..+++++|++++|+
T Consensus 10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVV 89 (173)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEE
Confidence 34566999999999999999999999886666677877777777777899999999999999989999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCCC
Q 031796 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 146 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~~ 146 (153)
|++++.++.....++..++......+.|+++|+||+|+.+....+++.+.+++.
T Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~ 143 (173)
T cd04154 90 DSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELD 143 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCcc
Confidence 999999999988888887765445689999999999998766666666666543
No 20
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.96 E-value=2.1e-27 Score=160.05 Aligned_cols=127 Identities=63% Similarity=1.079 Sum_probs=110.9
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcc
Q 031796 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 98 (153)
||+++|.++||||||++++.+..+..+.||.+.....++...+.+.+||+||++++...+..+++++|++++|+|.++++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~ 80 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD 80 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH
Confidence 68999999999999999999987777778888888778888899999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCC
Q 031796 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL 145 (153)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~ 145 (153)
++.+...|+..++......+.|+++|+||+|+......+++.+.+.+
T Consensus 81 s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~ 127 (169)
T cd04158 81 RVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSL 127 (169)
T ss_pred HHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCC
Confidence 99999999999887655567899999999999876666655555443
No 21
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.4e-28 Score=164.31 Aligned_cols=135 Identities=24% Similarity=0.450 Sum_probs=118.5
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcc-cccCceeeEEEE----EEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~-~~~~t~~~~~~~----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
..-+|++++|++++|||-|+.||..+.|. ...+|+++++.+ ++...++.+||||+||++|+.+...+++.+.+.+
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl 91 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 91 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence 55689999999999999999999998887 557899988865 3445689999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC-----CCHhHHHHHhCCCcccc
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLRQ 150 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~-----~~~~~~~~~~~~~~~~~ 150 (153)
+|||++...+|+.+..|+.++..+. .+++++++||||+||.+. +++..++++.++.+++-
T Consensus 92 lVYDITr~~Tfenv~rWL~ELRdha-d~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~Et 156 (222)
T KOG0087|consen 92 LVYDITRRQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLET 156 (222)
T ss_pred EEEechhHHHHHHHHHHHHHHHhcC-CCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEe
Confidence 9999999999999999999886554 479999999999999872 46888999998887753
No 22
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.96 E-value=2.3e-27 Score=153.63 Aligned_cols=147 Identities=47% Similarity=0.844 Sum_probs=132.5
Q ss_pred HHHhhhc-ccCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCC
Q 031796 7 KLFSRLF-AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNT 85 (153)
Q Consensus 7 ~~~~~~~-~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (153)
+++.... ..+.++|+++|..|+||||++++|.+.......||.+++..+...+++.+.+||..||...++.|..|+..+
T Consensus 5 silrk~k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfest 84 (185)
T KOG0073|consen 5 SILRKQKLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFEST 84 (185)
T ss_pred HHHHHHHhhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhcc
Confidence 3444333 456899999999999999999999988766779999999999999999999999999999999999999999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCCCcc-ccCCC
Q 031796 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHW 153 (153)
Q Consensus 86 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~~~~-~~~~~ 153 (153)
|++++|+|.+|+.++++-...+...+........|+++++||.|++.+.+.+++...+++..+ +.++|
T Consensus 85 dglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~ 153 (185)
T KOG0073|consen 85 DGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHW 153 (185)
T ss_pred CeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCc
Confidence 999999999999999999888888887766678999999999999999999999999999988 66665
No 23
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.95 E-value=6.2e-28 Score=165.67 Aligned_cols=117 Identities=23% Similarity=0.362 Sum_probs=96.0
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCcc-cccCceeeEEE---EEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEE
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~-~~~~t~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 91 (153)
+.+||+++|+.+||||||++++..+.|. .+.||.+..+. .++...+.+.+|||+|+++|+.++..+++++|++++|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 4589999999999999999999999886 44677765443 2333457899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
||++++++|..+...|...+... .+++|+++||||+|+.+.
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~-~~~~piilvgNK~DL~~~ 122 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHH-CPNVPILLVGTKKDLRND 122 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEeChhhhcC
Confidence 99999999999976444433332 257999999999999654
No 24
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.95 E-value=2.1e-27 Score=163.88 Aligned_cols=133 Identities=22% Similarity=0.375 Sum_probs=108.5
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEE--EEEE-------cCeEEEEEEcCCCCCchhcHHHhhcCCCE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY-------KNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~--~~~~-------~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 87 (153)
+||+++|+.+||||||++++.++.+.. +.+|++..+. .+.. ..+.+.+||++|+++|...+..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999988764 4567664432 2332 34789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCC------------------CCCCceEEEEEeCCCccCCC---------CHhHHH
Q 031796 88 LIFVVDSNDRDRVVEARDELHRMLNED------------------ELRDAVLLVFANKQDLPNAM---------NAAEIT 140 (153)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~------------------~~~~~pii~v~~K~Dl~~~~---------~~~~~~ 140 (153)
+++|||++++++|..+..|+..+.... ...++|+++||||+|+.++. ....++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999988886531 12479999999999996542 244678
Q ss_pred HHhCCCcccc
Q 031796 141 DKLGLHSLRQ 150 (153)
Q Consensus 141 ~~~~~~~~~~ 150 (153)
+++|++.+..
T Consensus 161 ~~~~~~~i~~ 170 (202)
T cd04102 161 EQGNAEEINL 170 (202)
T ss_pred HhcCCceEEE
Confidence 8899887654
No 25
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=7.3e-28 Score=163.59 Aligned_cols=131 Identities=18% Similarity=0.277 Sum_probs=104.0
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEE-EE--EEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEE
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~-~~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (153)
++||+++|+.|||||||++++.++.+.. +.||.+..+. .+ ....+++.+|||+|++.|......+++++|++++||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 4799999999999999999999988874 4566654442 22 234478999999999999999999999999999999
Q ss_pred ECCCcccHHHH-HHHHHHHHcCCCCCCceEEEEEeCCCccCC-----------------CCHhHHHHHhCC-Cccc
Q 031796 93 DSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNA-----------------MNAAEITDKLGL-HSLR 149 (153)
Q Consensus 93 d~~~~~s~~~~-~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~-----------------~~~~~~~~~~~~-~~~~ 149 (153)
|++++++|..+ ..|+..+... .++.|+++||||+|+... +++++++++++. .+++
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~--~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E 154 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEF--CPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLE 154 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHH--CCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEE
Confidence 99999999996 5665555433 257999999999998531 246778888886 4543
No 26
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.95 E-value=2.7e-27 Score=165.36 Aligned_cols=114 Identities=20% Similarity=0.392 Sum_probs=101.8
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCc
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 97 (153)
+||+++|.+++|||||++++.++++....+|.+..+.......+.+.+|||+|++.+...+..+++++|++++|||++++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~ 80 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNV 80 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999999987777888877766666778999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
++|..+..||..+.+. ...++|+++||||+|+.+
T Consensus 81 ~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 81 QSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred HHHHHHHHHHHHHHHh-cCCCCcEEEEEECccccc
Confidence 9999999999887654 335799999999999965
No 27
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.95 E-value=9.7e-28 Score=163.45 Aligned_cols=133 Identities=16% Similarity=0.293 Sum_probs=106.3
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEE-E--EEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~-~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 90 (153)
...+||+++|+.|||||||++++..+.+.. +.||.+..+. . ++...+.+.+|||+|+++|..++..+++++|++++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 456899999999999999999999998864 4566654442 2 23345789999999999999999999999999999
Q ss_pred EEECCCcccHHHH-HHHHHHHHcCCCCCCceEEEEEeCCCccCC-----------------CCHhHHHHHhCC-Cccc
Q 031796 91 VVDSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNA-----------------MNAAEITDKLGL-HSLR 149 (153)
Q Consensus 91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~-----------------~~~~~~~~~~~~-~~~~ 149 (153)
|||++++++|..+ ..|+..+... .++.|+++||||+|+.+. ++.++++++.+. .+++
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E 158 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIE 158 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEE
Confidence 9999999999997 5665555432 257999999999998641 247778888885 5554
No 28
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.95 E-value=4.9e-27 Score=156.49 Aligned_cols=130 Identities=68% Similarity=1.154 Sum_probs=110.0
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcc
Q 031796 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 98 (153)
||+++|++++|||||++++..+.+....||.+.+...++.....+.+||+||++.+...+..+++.+|++++|+|++++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 80 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD 80 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence 68999999999999999998887776677877777777788899999999999999999999999999999999999988
Q ss_pred cHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCCCcc
Q 031796 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 148 (153)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~~~~ 148 (153)
++.....++...++.....+.|+++|+||+|+.++....++.+.++...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~ 130 (158)
T cd04151 81 RLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSEL 130 (158)
T ss_pred HHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCcccc
Confidence 88777777777666544457999999999999876666677777665443
No 29
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.95 E-value=6.7e-27 Score=161.56 Aligned_cols=130 Identities=20% Similarity=0.476 Sum_probs=102.5
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEE--EEEEEc--CeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (153)
+.|+++|+.|||||||++++..+.|... .+|.+..+ ..+... .+.+.+|||+|+++|..++..+++++|++++||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 4689999999999999999999888653 45665444 344444 488999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHh-CCCcc
Q 031796 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKL-GLHSL 148 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~-~~~~~ 148 (153)
|++++++|..+..|+..+ ......++|+++||||+|+.... +.++++++. +..++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i-~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~ 141 (202)
T cd04120 81 DITKKETFDDLPKWMKMI-DKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFC 141 (202)
T ss_pred ECcCHHHHHHHHHHHHHH-HHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEE
Confidence 999999999998877654 44344679999999999996432 234455553 44444
No 30
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.95 E-value=4.3e-27 Score=161.06 Aligned_cols=133 Identities=20% Similarity=0.348 Sum_probs=107.8
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEE--EEEEEc--CeEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
...+||+++|+.|||||||++++.+..+... .++.+.++ ..+... .+.+.+||++|+++|..++..+++++|+++
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 3569999999999999999999998877643 34544443 334433 378999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC-----CCHhHHHHHhCCCccc
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLR 149 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~-----~~~~~~~~~~~~~~~~ 149 (153)
+|||++++.+|..+..|+..+.... ++.|+++||||+|+.+. ++.+++++..+..+++
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e 146 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFE 146 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEE
Confidence 9999999999999998888875542 58999999999999753 2456777777776653
No 31
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=7e-28 Score=155.78 Aligned_cols=135 Identities=24% Similarity=0.427 Sum_probs=113.5
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccccC-ceeeEEE----EEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVE----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~-t~~~~~~----~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
...+||+++|++|+|||||+.+|....|.+..| |++.++. .+++..+++.+|||+||++|+.+.++|++.+.++|
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI 88 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII 88 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence 456999999999999999999999998887655 4776654 34556789999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC-----CCHhHHHHHhCCCccc
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLR 149 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~-----~~~~~~~~~~~~~~~~ 149 (153)
+|||++.+++|..+..|+.++-.....+++..++||||+|...+ ++...++++.+..+++
T Consensus 89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE 153 (209)
T KOG0080|consen 89 LVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIE 153 (209)
T ss_pred EEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEE
Confidence 99999999999999888888766667788999999999997643 3455677776665553
No 32
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.95 E-value=4.4e-27 Score=158.97 Aligned_cols=133 Identities=19% Similarity=0.290 Sum_probs=105.3
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEE-EEEE--cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEE
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (153)
.+||+++|.+|||||||++++..+++.. ..||.+..+. .+.. ..+.+.+||+||++++..++..+++.+|++++||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 4799999999999999999999988863 4566654332 2333 3478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCccc
Q 031796 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSLR 149 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~~ 149 (153)
|++++++|..+..|+..+.+.....++|+++|+||+|+.+.. +..++++..+.++++
T Consensus 82 d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e 143 (172)
T cd04141 82 SVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFE 143 (172)
T ss_pred ECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEE
Confidence 999999999998876655443333579999999999986542 355666777766553
No 33
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.95 E-value=1.8e-26 Score=153.99 Aligned_cols=129 Identities=52% Similarity=0.855 Sum_probs=107.7
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCCc-c-cccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCC
Q 031796 19 RILMVGLDAAGKTTILYKLKLGEI-V-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 96 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~~-~-~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 96 (153)
+|+++|+++||||||++++.+... . ...||.+.....+.....++.+||+||++++...+..+++++|++++|+|+++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 80 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD 80 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence 589999999999999999998753 3 34677777777777788999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHcCCC--CCCceEEEEEeCCCccCCCCHhHHHHHhCCCc
Q 031796 97 RDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAMNAAEITDKLGLHS 147 (153)
Q Consensus 97 ~~s~~~~~~~~~~~~~~~~--~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~~~ 147 (153)
+.++.....++..+++... ..++|+++|+||+|+..+....++.+.+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~ 133 (162)
T cd04157 81 RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLEN 133 (162)
T ss_pred HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCcc
Confidence 9999888888877765432 25799999999999987766667776666543
No 34
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.95 E-value=4.9e-27 Score=159.17 Aligned_cols=130 Identities=18% Similarity=0.319 Sum_probs=103.8
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEE-EE--EEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~-~~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (153)
+|++++|+.++|||||+.++..+.|.. +.||.+..+. .+ +...+++.+|||+|+++|..++..+++++|++++|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 689999999999999999999998874 4677654432 22 2344889999999999999999999999999999999
Q ss_pred CCCcccHHHH-HHHHHHHHcCCCCCCceEEEEEeCCCccCC---------------CCHhHHHHHhCCC-ccc
Q 031796 94 SNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNA---------------MNAAEITDKLGLH-SLR 149 (153)
Q Consensus 94 ~~~~~s~~~~-~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~---------------~~~~~~~~~~~~~-~~~ 149 (153)
++++++|..+ ..|+..+.... +++|+++||||+|+.++ ++.+.+++..+.. +++
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E 152 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIE 152 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEE
Confidence 9999999998 46766654332 47999999999999643 1346677777764 443
No 35
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.95 E-value=3.6e-27 Score=164.81 Aligned_cols=132 Identities=15% Similarity=0.271 Sum_probs=105.9
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEE-EE--EEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEE
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~-~~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (153)
++||+++|+.|||||||++++..+.++. +.||....+. .+ +...+.+.+|||+|++.|...+..+++.+|++++||
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 3799999999999999999999988874 4667665543 22 334578999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC-----------------CCHhHHHHHhCC-Cccc
Q 031796 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----------------MNAAEITDKLGL-HSLR 149 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~-----------------~~~~~~~~~~~~-~~~~ 149 (153)
|++++++|..+..+|....... .++.|+++||||+|+... ++.+.+++++|. .+++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E 154 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVE 154 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEE
Confidence 9999999999977666554432 367999999999999642 236667778875 4554
No 36
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.95 E-value=2.2e-26 Score=153.17 Aligned_cols=128 Identities=74% Similarity=1.261 Sum_probs=114.2
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcc
Q 031796 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 98 (153)
||+++|.+|||||||++++.+.......+|.+.+...+......+.+||+||++.+...+..+++.+|++++|+|+++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~ 80 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE 80 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence 68999999999999999999998666778888888888888999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCCC
Q 031796 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 146 (153)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~~ 146 (153)
++.....++..+.......+.|+++|+||+|+......+++.+.++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~ 128 (158)
T cd00878 81 RIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLE 128 (158)
T ss_pred HHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChh
Confidence 999999999888776555789999999999998877777777776654
No 37
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=4.8e-27 Score=165.05 Aligned_cols=133 Identities=18% Similarity=0.303 Sum_probs=106.3
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEEE-E--EEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET-V--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~~-~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 90 (153)
...+||+++|+.|||||||+++|..+.|.. +.||.+..+.. + ....+.+.+|||+|++.|..++..+++++|++++
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl 90 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 90 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence 346899999999999999999999988874 45676655432 2 2345789999999999999999999999999999
Q ss_pred EEECCCcccHHHH-HHHHHHHHcCCCCCCceEEEEEeCCCccCC-----------------CCHhHHHHHhCCC-ccc
Q 031796 91 VVDSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNA-----------------MNAAEITDKLGLH-SLR 149 (153)
Q Consensus 91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~-----------------~~~~~~~~~~~~~-~~~ 149 (153)
|||++++++|... ..|+..+.... ++.|+++||||+|+... +++++++++.++. +|+
T Consensus 91 VyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~E 166 (232)
T cd04174 91 CFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLE 166 (232)
T ss_pred EEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEE
Confidence 9999999999985 56666554332 47899999999998631 2477888899884 553
No 38
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.95 E-value=1.7e-26 Score=156.85 Aligned_cols=133 Identities=23% Similarity=0.509 Sum_probs=107.3
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEEEE--EEE------------cCeEEEEEEcCCCCCchhcHHH
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET--VEY------------KNISFTVWDVGGQDKIRPLWRH 80 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~~~--~~~------------~~~~~~i~D~~g~~~~~~~~~~ 80 (153)
..+||+++|++|||||||++++.+..+... .+|.+.++.. +.. ..+.+.+||+||++++...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 458999999999999999999999887643 5566544432 221 2378999999999999999999
Q ss_pred hhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 81 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+++++|++++|||++++++|..+..|+..+......++.|+++|+||+|+.+.. ...+++++++.+++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 155 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYF 155 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEE
Confidence 999999999999999999999999988877655444678999999999996532 35667777776655
No 39
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.95 E-value=1.3e-26 Score=157.06 Aligned_cols=115 Identities=17% Similarity=0.267 Sum_probs=94.1
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcc-cccCceeeEEE-EEEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (153)
+|++++|+.|+|||||++++..+.+. .+.||.+..+. .+...+ +.+.+||++|++++...+..+++++|++++|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 68999999999999999999998885 44677765543 333333 789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
++++++|..+..+|...+... .++.|+++||||+|+.+.
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~-~~~~piilvgnK~Dl~~~ 120 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLRDD 120 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEECHhhhhC
Confidence 999999999976444443332 257999999999998653
No 40
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.95 E-value=1.5e-26 Score=154.84 Aligned_cols=132 Identities=20% Similarity=0.381 Sum_probs=105.4
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEE-EEEEE--cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEE
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~-~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (153)
++||+++|++|+|||||++++.++.+... .+|++..+ ..+.. ..+.+.+|||||++.+...+..+++.+|++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 47999999999999999999998877643 45544322 22333 3567889999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
|.++..+|..+..|+..+.......+.|+++|+||+|+..+. +.+++++.++.+++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 141 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFL 141 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEE
Confidence 999999999999998888765445689999999999997542 23466677766554
No 41
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.95 E-value=2.6e-27 Score=150.99 Aligned_cols=142 Identities=37% Similarity=0.743 Sum_probs=132.5
Q ss_pred hhcccCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 11 ~~~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
..+-+..+.+.++|-.++|||||++....+.+.. ..||.+++...++...+.+.+||.||+..++++|+.|.+.+++++
T Consensus 14 ~~f~k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aiv 93 (186)
T KOG0075|consen 14 NSFWKEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIV 93 (186)
T ss_pred HHHHHheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEE
Confidence 3445778999999999999999999988777764 489999999999999999999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCCCccccCC
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH 152 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~~~~~~~~ 152 (153)
||+|+++++.+......+..++.++....+|+++.|||.|++++.+..++.+++|+.++.+|+
T Consensus 94 Y~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdRE 156 (186)
T KOG0075|consen 94 YVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDRE 156 (186)
T ss_pred EEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccce
Confidence 999999999999999999999999999999999999999999999999999999999998764
No 42
>PTZ00369 Ras-like protein; Provisional
Probab=99.95 E-value=1.9e-26 Score=158.03 Aligned_cols=134 Identities=19% Similarity=0.341 Sum_probs=106.8
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEE---EEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 90 (153)
...+||+++|++|+|||||++++.++.+.. ..+|.+..+. .++...+.+.+|||||++++..++..+++.+|++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 456999999999999999999999988763 3455544432 233345688999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
|||++++++|..+..|+..+.+.....+.|+++|+||+|+.+.. ...++++.++.+++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~ 145 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFL 145 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEE
Confidence 99999999999999888877665445689999999999986542 24456666666544
No 43
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.95 E-value=2.4e-26 Score=153.49 Aligned_cols=132 Identities=18% Similarity=0.358 Sum_probs=102.5
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeE-EEEEEE--cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEE
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN-VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~-~~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (153)
.+||+++|++|||||||++++..+.+... .||.... ...+.. ....+.+|||||++++...+..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 37999999999999999999998877643 4444321 222333 3467889999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
|++++++|.....|+..+.......+.|+++|+||+|+.... ....+++.++.+++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 141 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFY 141 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEE
Confidence 999999999999888887665444679999999999996532 23345555554443
No 44
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.94 E-value=4.5e-26 Score=155.43 Aligned_cols=129 Identities=51% Similarity=0.912 Sum_probs=105.6
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEE-----cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEE
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~-----~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 90 (153)
+.+||+++|++|||||||++++....+....||.+........ ....+.+|||||++++...+..+++++|++++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999988877666776655544333 45789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhC
Q 031796 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG 144 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~ 144 (153)
|+|+++++++.....++..+.......+.|+++|+||+|+......+++.+.++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~ 135 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLA 135 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhC
Confidence 999999989988888887776544445799999999999986655555555444
No 45
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.94 E-value=8.7e-26 Score=154.64 Aligned_cols=134 Identities=39% Similarity=0.734 Sum_probs=116.0
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEE
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (153)
..+..|++++|++|||||||++++.+..+..+.||.+.....+...+..+.+||+||++.+...+..+++.+|++++|+|
T Consensus 16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D 95 (190)
T cd00879 16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVD 95 (190)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEE
Confidence 46689999999999999999999998877666777777777778888999999999999998888899999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCCCc
Q 031796 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS 147 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~~~ 147 (153)
.++.+++.....++..++......+.|+++++||+|+......+++.+.++...
T Consensus 96 ~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~ 149 (190)
T cd00879 96 AADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYG 149 (190)
T ss_pred CCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCccc
Confidence 999999988888888887765556799999999999987777777777776543
No 46
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.94 E-value=7.7e-26 Score=152.59 Aligned_cols=139 Identities=51% Similarity=0.841 Sum_probs=120.1
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEE
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (153)
..+.++++++|++|+|||||++++.+..+....+|.+.+...+...+..+.+||+||+..+...+..+++++|++++|+|
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D 90 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVID 90 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEe
Confidence 45579999999999999999999998877666777787777778888999999999999888888888999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCCCccccCC
Q 031796 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH 152 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~~~~~~~~ 152 (153)
+++..++.....++...+.......+|+++++||+|+.+....+++.+.+++..+.++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~ 149 (173)
T cd04155 91 SADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRT 149 (173)
T ss_pred CCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCe
Confidence 99988898888888877665545679999999999998877788899999888766554
No 47
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.94 E-value=4.8e-26 Score=151.76 Aligned_cols=130 Identities=51% Similarity=0.944 Sum_probs=109.7
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEE-cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCc
Q 031796 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 97 (153)
+|+++|++|||||||++++.+..+....||.+.....+.. ....+.+||+||++.+...+..+++++|++++|+|++++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~ 80 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE 80 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH
Confidence 5899999999999999999999887667777766665554 357899999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCCCcc
Q 031796 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 148 (153)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~~~~ 148 (153)
.++.....++..++......+.|+++|+||+|+.......++...+++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~ 131 (160)
T cd04156 81 ARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKY 131 (160)
T ss_pred HHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCccc
Confidence 999999888888876654468999999999999876666777766655443
No 48
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.94 E-value=3e-26 Score=153.84 Aligned_cols=131 Identities=24% Similarity=0.431 Sum_probs=104.1
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEEE--EEEE--cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEE
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 91 (153)
.+||+++|++|||||||++++.++++... .+|.+.++. .+.. ..+++.+||+||++++...+..+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 37999999999999999999999987654 445555443 2333 346899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
||++++++|..+..|+...... ..++.|+++|+||+|+..+. +..++++..+..++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 142 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFL 142 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEE
Confidence 9999999999999988876443 23578999999999997543 34556666565544
No 49
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.94 E-value=5e-27 Score=149.97 Aligned_cols=131 Identities=23% Similarity=0.481 Sum_probs=112.6
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEE--EEEE--EcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~--~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (153)
++++++|++|+|||+|+.+|....|... ..|++.++ .+++ +..+++.|||++|+++|+.+...+++..|++++||
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY 88 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 88 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence 5678999999999999999999988754 45666655 3343 45589999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC-----CCHhHHHHHhCCCcccc
Q 031796 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLRQ 150 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~-----~~~~~~~~~~~~~~~~~ 150 (153)
|.++.+||.+...|+..+-+.. ...|-++||||+|.++. +++..++..+|+..|+.
T Consensus 89 DVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FET 149 (198)
T KOG0079|consen 89 DVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFET 149 (198)
T ss_pred ECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCccceeeehHHHHHHHHhcCchheeh
Confidence 9999999999999999985543 57999999999999863 46888999999998864
No 50
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.94 E-value=3.9e-26 Score=157.84 Aligned_cols=127 Identities=23% Similarity=0.382 Sum_probs=101.8
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEE--EEEE---cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~--~~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 91 (153)
+||+++|++|||||||++++.++.+.. ..+|.+.++. .+.. ..+.+.+||+||++.+...+..+++++|++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999988764 4677765542 3333 357899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCC---CCCCceEEEEEeCCCccC--CC---CHhHHHHHhC
Q 031796 92 VDSNDRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPN--AM---NAAEITDKLG 144 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~---~~~~~pii~v~~K~Dl~~--~~---~~~~~~~~~~ 144 (153)
||++++++|..+..|+..+.... ...++|+++|+||+|+.. .. +.+++++..+
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~ 141 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENG 141 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcC
Confidence 99999999999988877654321 235789999999999963 22 3455666666
No 51
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.94 E-value=4.6e-26 Score=153.74 Aligned_cols=130 Identities=23% Similarity=0.423 Sum_probs=103.2
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEE--EEEEc--CeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEE
Q 031796 19 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (153)
||+++|++|||||||++++.++.+.. +.||.+..+. .+... ...+++|||||++++...+..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999998874 4577665553 23333 4689999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCC-------HhHHHHHhCCCcc
Q 031796 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-------AAEITDKLGLHSL 148 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~-------~~~~~~~~~~~~~ 148 (153)
+++++++..+..|+..+.+.......|+++|+||+|+..... ...++++++..++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYW 143 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEE
Confidence 999999999998888876654434678999999999864322 2245555555444
No 52
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.94 E-value=1e-25 Score=150.65 Aligned_cols=132 Identities=17% Similarity=0.365 Sum_probs=102.6
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCcee-eEEEEEEE--cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEE
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~-~~~~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (153)
++|++++|++|+|||||++++..+.+... .+|.. .....+.. ....+.+||+||++++...+..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 47999999999999999999999887644 34432 22223333 3467889999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
|++++++|.++..|+..+.......+.|+++|+||+|+.... ....+++.++.+++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 141 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFM 141 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEE
Confidence 999999999999888887665444689999999999986432 23455555555443
No 53
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.94 E-value=8.4e-26 Score=158.11 Aligned_cols=132 Identities=25% Similarity=0.381 Sum_probs=105.8
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEEEEEE----cCeEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
...+||+++|+.|||||||++++..+++.. ..+|.+.++..... ..+.+.+|||+|++++..++..+++.+|+++
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 667999999999999999999998888764 46777766554432 3479999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-CHh--HHHHHhCCCcc
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAA--EITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-~~~--~~~~~~~~~~~ 148 (153)
+|||++++++|..+..|+..+... ..+.|+++||||+|+.... ..+ ++++..+..+|
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~ 150 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYY 150 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEEchhhhhccCCHHHHHHHHhcCCEEE
Confidence 999999999999999888877543 2579999999999996532 221 44444455444
No 54
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.94 E-value=4.5e-26 Score=152.59 Aligned_cols=131 Identities=24% Similarity=0.465 Sum_probs=103.0
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEE--EEE--EcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~--~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (153)
+||+++|++|||||||++++.++++.. ..+|.+.++. .+. .....+.+|||||++.+...+..+++++|++++|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999998764 3566665543 333 33478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCC----CCCceEEEEEeCCCccCC--C---CHhHHHHHhCCCcc
Q 031796 93 DSNDRDRVVEARDELHRMLNEDE----LRDAVLLVFANKQDLPNA--M---NAAEITDKLGLHSL 148 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~----~~~~pii~v~~K~Dl~~~--~---~~~~~~~~~~~~~~ 148 (153)
|.++++++..+..|+..+..... ..+.|+++|+||+|+... . +...+++..+.+++
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 145 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYF 145 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEE
Confidence 99999999999888887765432 257999999999999732 1 23345555565444
No 55
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.94 E-value=6.7e-26 Score=151.45 Aligned_cols=132 Identities=20% Similarity=0.353 Sum_probs=103.2
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEEE-E--EEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEE
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE-T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~~-~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (153)
.+|++++|++|+|||||++++.+..+... .++....+. . +......+.+|||||++++...+..+++.+|++++||
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 47999999999999999999998876533 344432222 2 3333468999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
|+++.++|..+..|+..+.+.....+.|+++|+||+|+..+. ...++++..+.+++
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 142 (164)
T cd04145 82 SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYI 142 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEE
Confidence 999999999999988887665444689999999999997542 23455555565544
No 56
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.94 E-value=9.5e-26 Score=150.17 Aligned_cols=132 Identities=19% Similarity=0.356 Sum_probs=103.0
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEE-EEEEE--cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEE
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~-~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (153)
.+||+++|++|||||||++++.++.+... .||....+ ..+.. ....+.+||++|++++...+..+++++|++++||
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 36899999999999999999999887643 44444322 22233 3366889999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC----CHhHHHHHhCCCcc
Q 031796 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSL 148 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~----~~~~~~~~~~~~~~ 148 (153)
|+++..+|..+..|+..+.+.....+.|+++|+||+|+.+.. ...++++.++.+.+
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 140 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYI 140 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEE
Confidence 999999999998888887765445689999999999997533 23445555665544
No 57
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.94 E-value=6.9e-26 Score=151.97 Aligned_cols=130 Identities=22% Similarity=0.498 Sum_probs=103.6
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEE--EEEE--cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (153)
+||+++|++|||||||++++.+.++.. ..+|.+.++. .+.. ..+.+.+||+||++++...+..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 699999999999999999999998764 3566654442 3332 3378999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
|.++++++.++..|+..+.. ......|+++|+||+|+.... ...++++.++.+.+
T Consensus 82 d~~~~~s~~~~~~~~~~i~~-~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 141 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKT-YSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFF 141 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHH-hCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEE
Confidence 99999999999888877643 333578999999999996542 24456666666544
No 58
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.94 E-value=1.4e-25 Score=156.24 Aligned_cols=132 Identities=24% Similarity=0.537 Sum_probs=107.0
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEEEE--EEE---cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEE
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET--VEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~~~--~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 90 (153)
.+||+++|++|||||||++++.+.++... .+|.+.++.. +.. ..+.+.+||++|++.+...+..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 58999999999999999999999887643 5666655432 322 24789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
|||++++++|..+..|+..+........+|+++|+||+|+.... ...++++.++..++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 144 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYI 144 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEE
Confidence 99999999999999999888665444568899999999997532 34567777775554
No 59
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.94 E-value=1.9e-25 Score=150.56 Aligned_cols=133 Identities=24% Similarity=0.445 Sum_probs=104.9
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEE--EEEE--cCeEEEEEEcCCCCCch-hcHHHhhcCCCEEEE
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIR-PLWRHYFQNTQGLIF 90 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~~i~ 90 (153)
.+||+++|++|||||||++++....+.. +.++.+..+. .+.. ..+.+.+||++|++++. ..+..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5799999999999999999999888763 4556554443 3333 33789999999999886 567888999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCccc
Q 031796 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSLR 149 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~~ 149 (153)
|||++++++|..+..|+..+.......++|+++|+||+|+.+.. ..+++++..+.++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e 145 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFE 145 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEE
Confidence 99999999999999888877665445689999999999987543 244566666655553
No 60
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.94 E-value=3e-25 Score=148.43 Aligned_cols=130 Identities=21% Similarity=0.438 Sum_probs=104.6
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEE--EEEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCEEEEEE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~--~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (153)
+||+++|++|+|||||++++.++.+.+ +.+|.+.+.. .+...+ +.+.+||++|++++...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 589999999999999999999998864 3667765543 344443 68899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
|++++++|..+..|+..+... ...++|+++|+||.|+.++. +...+++..+.+++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 140 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEY-APEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFF 140 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEE
Confidence 999999999999888776543 23479999999999996543 35566666665544
No 61
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.94 E-value=1.6e-25 Score=149.74 Aligned_cols=131 Identities=20% Similarity=0.375 Sum_probs=101.8
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeE-EEE--EEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN-VET--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~-~~~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (153)
+||+++|++|||||||++++.+..+... .+|.... ... .....+.+.+|||||++++...+..+++.+|++++|||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 5899999999999999999998877643 3333211 122 22334789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+++++++..+..|+..+.......+.|+++|+||+|+..+. ....+++.++..++
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 140 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFL 140 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEE
Confidence 99999999998888777655444578999999999997532 23456666665544
No 62
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.94 E-value=2.8e-25 Score=149.35 Aligned_cols=115 Identities=24% Similarity=0.438 Sum_probs=96.5
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcc-cccCceeeEEEEEEE----cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (153)
+||+++|++|||||||++++..+.+. ...+|.+.+...... ..+.+.+|||+|++.+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999987765 346677666554433 3478999999999999988899999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
|+++.+++..+..|+..+.... .+.|+++|+||+|+....
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~ 120 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRK 120 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhccccc
Confidence 9999999999988888775543 279999999999997443
No 63
>PLN00023 GTP-binding protein; Provisional
Probab=99.94 E-value=3.3e-25 Score=160.61 Aligned_cols=134 Identities=22% Similarity=0.395 Sum_probs=107.3
Q ss_pred cccCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEE--EEEEE---------------cCeEEEEEEcCCCCCc
Q 031796 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY---------------KNISFTVWDVGGQDKI 74 (153)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~--~~~~~---------------~~~~~~i~D~~g~~~~ 74 (153)
.....+||+++|+.|||||||+++|.++.+.. ..+|++.++ ..+.. ..+.+.+|||+|+++|
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY 96 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence 34667999999999999999999999988764 467776654 22332 2477999999999999
Q ss_pred hhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCC-----------CCCceEEEEEeCCCccCCC---------
Q 031796 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE-----------LRDAVLLVFANKQDLPNAM--------- 134 (153)
Q Consensus 75 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~pii~v~~K~Dl~~~~--------- 134 (153)
..++..+++++|++|+|||+++.++|..+..|+..+..... ..++|+++||||+|+....
T Consensus 97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~ 176 (334)
T PLN00023 97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNL 176 (334)
T ss_pred hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccccc
Confidence 99999999999999999999999999999999888765421 1358999999999996431
Q ss_pred --CHhHHHHHhCCC
Q 031796 135 --NAAEITDKLGLH 146 (153)
Q Consensus 135 --~~~~~~~~~~~~ 146 (153)
.+++++++.|+.
T Consensus 177 ~e~a~~~A~~~g~l 190 (334)
T PLN00023 177 VDAARQWVEKQGLL 190 (334)
T ss_pred HHHHHHHHHHcCCC
Confidence 255667666644
No 64
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.94 E-value=2.6e-25 Score=155.29 Aligned_cols=131 Identities=21% Similarity=0.347 Sum_probs=104.2
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEE--EEEE---cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~--~~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 91 (153)
+|++++|++|||||||+++|.+..+.. +.+|.+.++. .+.. ..+.+.+||++|++.+...+..+++++|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 589999999999999999999988764 4567766543 3333 247899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCC--CCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 92 VDSNDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
||++++++|..+..|+..+..... ..++|+++|+||+|+.+.. ....+++.+++.++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~ 144 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESC 144 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEE
Confidence 999999999999888777654322 2457899999999997432 34566676665544
No 65
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.94 E-value=9.1e-26 Score=152.81 Aligned_cols=114 Identities=20% Similarity=0.313 Sum_probs=91.2
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEE-E--EEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~-~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (153)
+|++++|++|||||||+.++..+.+.. +.||....+. . .+...+.+.+|||+|++.+...+..+++++|++++|||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 81 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFS 81 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEE
Confidence 699999999999999999999988764 3555543221 2 22334789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
++++++|..+...|...+... .++.|+++||||+|+.+
T Consensus 82 ~~~~~sf~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~ 119 (174)
T cd01871 82 LVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRD 119 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEeeChhhcc
Confidence 999999999975444433332 25799999999999964
No 66
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.93 E-value=3.2e-25 Score=147.96 Aligned_cols=130 Identities=21% Similarity=0.430 Sum_probs=104.4
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEEE--EEE----cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--VEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~~--~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 90 (153)
+||+++|++++|||||++++.++.+.. ..+|.+.++.. +.. ..+++.+||+||++++...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999987763 35666665532 222 34789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCccc
Q 031796 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSLR 149 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~~ 149 (153)
|||+++++++..+..|+..+... ..++|+++|+||+|+..+. +..++++.++.+.++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 142 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAE--CGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFR 142 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEE
Confidence 99999999999998888776443 2579999999999986532 244567777776553
No 67
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.93 E-value=2.5e-25 Score=149.21 Aligned_cols=131 Identities=27% Similarity=0.514 Sum_probs=103.1
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEE--EEEEEc--CeEEEEEEcCCCCCchhcHHHhhcCCCEEEEE
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 91 (153)
.+|++++|++|||||||++++.++.+.. ..+|.+..+ ..+... ...+.+||+||++.+...+..+++++|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 3799999999999999999999987763 345555433 333333 46889999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
||++++++|..+..|+..+... ...+.|+++|+||+|+..+. ....+++..+.+++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~-~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 142 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFL 142 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEE
Confidence 9999999999999988876443 23578999999999986542 24556666666544
No 68
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.93 E-value=6.6e-25 Score=145.27 Aligned_cols=129 Identities=39% Similarity=0.774 Sum_probs=109.6
Q ss_pred EEEEcCCCCCHHHHHHhHhcCCcc-cccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcc
Q 031796 20 ILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (153)
Q Consensus 20 i~v~G~~~~GKSsli~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 98 (153)
|+++|++|+|||||++++.+..+. .+.||.+.....+......+.+||+||++.+...+..+++.+|++++|+|+++..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 81 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT 81 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH
Confidence 789999999999999999998776 4467777777777777799999999999999999999999999999999999998
Q ss_pred cHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCCCcc
Q 031796 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 148 (153)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~~~~ 148 (153)
++.....++..+.......+.|+++|+||+|+.+.....++.+.+++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~ 131 (159)
T cd04159 82 ALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSI 131 (159)
T ss_pred HHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccc
Confidence 89888888888876655568899999999999877666666666655433
No 69
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.93 E-value=1.9e-25 Score=150.11 Aligned_cols=132 Identities=23% Similarity=0.503 Sum_probs=104.3
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEEE--EEEEc--CeEEEEEEcCCCCCchhcHHHhhcCCCEEEE
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 90 (153)
..+||+++|++|+|||||++++.+.++... .+|.+..+. .+... .+.+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 358999999999999999999999887643 556554432 33333 3689999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
|||++++++|..+..|+..+... ...+.|+++|+||+|+.+.. +..++++..+.+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 143 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFL 143 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEE
Confidence 99999999999999888777543 23578999999999997532 23456666655544
No 70
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.93 E-value=3.5e-25 Score=150.96 Aligned_cols=112 Identities=22% Similarity=0.410 Sum_probs=94.2
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEE--EEEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCEEEEEE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~--~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (153)
+|++++|+.|||||||++++.++.+.. +.||.+.++. .+...+ +.+.+||++|+++|...+..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 589999999999999999999988874 4678776653 344443 78999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031796 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~ 131 (153)
|++++++|..+..|+..+.... ....| ++||||+|+.
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~-~~~~p-ilVgnK~Dl~ 117 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFN-KTAIP-ILVGTKYDLF 117 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCE-EEEEEchhcc
Confidence 9999999999998888775532 24567 6789999995
No 71
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.93 E-value=1.6e-25 Score=153.54 Aligned_cols=131 Identities=21% Similarity=0.328 Sum_probs=101.1
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEE-EEEE--EcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEEC
Q 031796 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~-~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (153)
||+++|.+|||||||++++.++.+... .+|.+..+ .... ...+.+.+|||||+++|...+..+++.+|++++|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 589999999999999999998887643 44544322 2222 3346799999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCC--CCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCccc
Q 031796 95 NDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSLR 149 (153)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~--~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~~ 149 (153)
++.++|..+..|+..+..... ..+.|+++|+||+|+.... ...++++.++..+++
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 142 (190)
T cd04144 81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIE 142 (190)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEE
Confidence 999999999988877654322 3578999999999996432 244566666765543
No 72
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.93 E-value=3.2e-25 Score=151.46 Aligned_cols=127 Identities=21% Similarity=0.336 Sum_probs=98.2
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEEE-EEEE---cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE-TVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~~-~~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (153)
+||+++|++|+|||||++++.++.+... .+|....+. .+.. ..+.+.+|||||++++...+..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 5899999999999999999999887643 455544432 2332 2468999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC---------CHhHHHHHhCC
Q 031796 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---------NAAEITDKLGL 145 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~---------~~~~~~~~~~~ 145 (153)
|++++++|..+...|....... .++.|+++|+||+|+.... +.+++++.++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~ 141 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHF-CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGA 141 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCC
Confidence 9999999999876444333322 2578999999999996532 34556666666
No 73
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.93 E-value=4.5e-25 Score=147.32 Aligned_cols=130 Identities=28% Similarity=0.546 Sum_probs=106.3
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEEE--EEEE--cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEE
Q 031796 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (153)
||+++|+.+||||||++++.++.+... .+|.+.+.. .+.. ..+.+.+||++|++++......+++++|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 799999999999999999999887744 556655543 3333 34789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCccc
Q 031796 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSLR 149 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~~ 149 (153)
.+++++|..+..|+..+..... .+.|++++|||.|+.+.. +.++++++.+..+++
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e 140 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFE 140 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEE
T ss_pred cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHHHHhCCEEEE
Confidence 9999999999988777654432 569999999999998632 356788888866654
No 74
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.93 E-value=5.9e-25 Score=147.42 Aligned_cols=125 Identities=41% Similarity=0.772 Sum_probs=104.6
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCCcc-------cccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEE
Q 031796 19 RILMVGLDAAGKTTILYKLKLGEIV-------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 91 (153)
+|+++|++|+|||||++++.+.... ...+|.+.+...+...+..+.+||+||++.+...+..+++.+|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 5899999999999999999764321 235677777788888889999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHh
Q 031796 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKL 143 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~ 143 (153)
+|+++.+++.....++..++......+.|+++++||+|+.......++.+.+
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~ 132 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVF 132 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHh
Confidence 9999988898888888888776555689999999999998776555544443
No 75
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.93 E-value=4.1e-25 Score=152.56 Aligned_cols=132 Identities=24% Similarity=0.509 Sum_probs=104.4
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEE--EEEEc--CeEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
...+||+++|++|||||||++++.+..+.. +.+|.+..+. .+... .+.+.+||+||++.+...+..+++++++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 346899999999999999999999988763 4566665543 33333 367899999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|||++++++|..+..|+..+.... ...|+++|+||+|+.... ...++++.++..++
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 145 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLF 145 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEE
Confidence 9999999999999998888764432 578999999999997542 23445556665544
No 76
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.93 E-value=6.5e-25 Score=147.15 Aligned_cols=130 Identities=25% Similarity=0.472 Sum_probs=103.1
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeE--EEEEEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCEEEE
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~--~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 90 (153)
..+||+++|++|+|||||++++..+.+... .++.+.+ ...+...+ ..+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 358999999999999999999998877643 4454433 33444444 688999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCC
Q 031796 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLH 146 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~ 146 (153)
|||++++.++..+..|+..+... ...++|+++|+||+|+.... ...++++..+..
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 141 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKY-GASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGML 141 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCc
Confidence 99999999999998888877543 23579999999999997542 344566666553
No 77
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.93 E-value=3.8e-25 Score=151.35 Aligned_cols=130 Identities=25% Similarity=0.463 Sum_probs=102.9
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEE--EEEE--cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (153)
+||+++|++|||||||++++.++.+.. +.+|.+.++. .+.. ..+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 589999999999999999999998864 4566664442 3333 3468899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
|++++++|..+..|+..+... .....|+++|+||+|+.+.. ....+++..+++++
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~-~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 140 (188)
T cd04125 81 DVTDQESFENLKFWINEINRY-ARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFF 140 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEE
Confidence 999999999999887776543 22458999999999997432 23456666666544
No 78
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.1e-25 Score=144.15 Aligned_cols=117 Identities=23% Similarity=0.398 Sum_probs=100.6
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEE----EEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEE
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~----~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 90 (153)
--+||+++|+.|+|||+|+++|..+-|++ ...|++..+. .+.+..+++++|||+|+++|+++..++++.+|++++
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalil 85 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEE
Confidence 34899999999999999999999988874 4567776653 344456899999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
|||++=..+|+.+..|+.++.+ +...+.--|+||||.|+.+.
T Consensus 86 vydiscqpsfdclpewlreie~-yan~kvlkilvgnk~d~~dr 127 (213)
T KOG0095|consen 86 VYDISCQPSFDCLPEWLREIEQ-YANNKVLKILVGNKIDLADR 127 (213)
T ss_pred EEecccCcchhhhHHHHHHHHH-HhhcceEEEeeccccchhhh
Confidence 9999999999999999998744 44467788999999999875
No 79
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.93 E-value=1.7e-24 Score=145.89 Aligned_cols=129 Identities=21% Similarity=0.222 Sum_probs=103.1
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcc--cccCceeeEE--EEEEEc--CeEEEEEEcCCCCCchhcHHHhhcCCCEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~--~~~~t~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 88 (153)
++.+|++++|.+|||||||++++.+..+. .+.||.+..+ ..+... ...+.+||++|++.+...+..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 45689999999999999999999998885 3456665443 233333 36889999999999999889899999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCC
Q 031796 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLH 146 (153)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~ 146 (153)
++|+|.+++.++..+..|+...... .++|+++|+||+|+.+.. +.+++++.+++.
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 141 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML---GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLP 141 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC---CCCeEEEEEEcccccccccccccCHHHHHHHcCCC
Confidence 9999999999999887777654222 479999999999996432 456788887764
No 80
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.93 E-value=9e-26 Score=146.42 Aligned_cols=136 Identities=21% Similarity=0.448 Sum_probs=115.6
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEEE--EE---EEcCeEEEEEEcCCCCCchhcHHHhhcCCCEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TV---EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~~--~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 88 (153)
-..++++++|++-+|||+|++.|..+++..- .||.+.++. .+ .+..+++++|||+||++|+++..+++++.-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 3568999999999999999999999999854 678887752 22 23458999999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCC-CCCceEEEEEeCCCccCC-----CCHhHHHHHhCCCcccc
Q 031796 89 IFVVDSNDRDRVVEARDELHRMLNEDE-LRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLRQ 150 (153)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~pii~v~~K~Dl~~~-----~~~~~~~~~~~~~~~~~ 150 (153)
++|||++|.++|+.+..|+.+...... ..++-+.+||+|+|+..+ ++++++++..|..+++.
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVET 153 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVET 153 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEe
Confidence 999999999999999999998765544 345668899999999865 45888999999988764
No 81
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.1e-25 Score=143.33 Aligned_cols=134 Identities=23% Similarity=0.395 Sum_probs=111.1
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEEEE----EEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~~~----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
..-+|++++|+.|+|||+|+++|...++... ..|+++++.. +-++.+++++|||+||++|++....+++.+.+.+
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAl 86 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 86 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceE
Confidence 3458999999999999999999999988744 6688887743 3345689999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCccc
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSLR 149 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~~ 149 (153)
+|||+++.++|.++..|+...-. ...+++-++++|||.|+..+. ++.+++++-.+.+++
T Consensus 87 LVYD~TsrdsfnaLtnWL~DaR~-lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flE 150 (214)
T KOG0086|consen 87 LVYDITSRDSFNALTNWLTDART-LASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLE 150 (214)
T ss_pred EEEeccchhhHHHHHHHHHHHHh-hCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeee
Confidence 99999999999999999998743 334788899999999998764 355666665554443
No 82
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.93 E-value=5.1e-25 Score=150.95 Aligned_cols=115 Identities=22% Similarity=0.334 Sum_probs=93.0
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEEE-EE--EEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE-TV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~~-~~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (153)
.||+++|++|||||||++++.++.+... .||....+. .+ +.....+.+||++|++.+...+..+++.+|++++|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 4899999999999999999999888643 566554442 22 2234789999999999999998889999999999999
Q ss_pred CCCcccHHHHHH-HHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 94 SNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 94 ~~~~~s~~~~~~-~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
++++++|..+.. |+..+... .++.|+++|+||+|+.+..
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~ 120 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREAR 120 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCh
Confidence 999999998875 55554432 2579999999999997653
No 83
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.93 E-value=6.4e-25 Score=146.63 Aligned_cols=129 Identities=23% Similarity=0.464 Sum_probs=102.4
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEE--EEEE--EcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEE
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~--~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 91 (153)
++|++++|++++|||||++++.++++.. ..++.+..+ ..+. .....+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 4799999999999999999999998775 455655332 2333 3447899999999999999988999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCC
Q 031796 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLH 146 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~ 146 (153)
+|+++++++.....|+..+..... +..|+++++||+|+.... ....+.+..+..
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 139 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYADENGLL 139 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHHHHcCCE
Confidence 999999999999988888765543 679999999999987422 234455555544
No 84
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.93 E-value=1.1e-24 Score=145.41 Aligned_cols=130 Identities=22% Similarity=0.443 Sum_probs=101.6
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEE--EEEE--cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (153)
+|++++|++++|||||++++.+..+.. ..++.+.++. .+.. ....+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 589999999999999999999888753 3445544433 2233 3468999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
|+++++++..+..|+..+... ..+++|+++|+||+|+.... +...+++..+..++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 140 (161)
T cd04113 81 DITNRTSFEALPTWLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFL 140 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEE
Confidence 999999999998888776432 23679999999999996532 24455666665443
No 85
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=7.1e-27 Score=151.00 Aligned_cols=136 Identities=26% Similarity=0.516 Sum_probs=116.9
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEEEEE--EE-----------cCeEEEEEEcCCCCCchhcHHHh
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETV--EY-----------KNISFTVWDVGGQDKIRPLWRHY 81 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~~~~--~~-----------~~~~~~i~D~~g~~~~~~~~~~~ 81 (153)
.-+|.+.+|++|+||||++.++..++|.+. ..|.++++... -+ ..+.+++|||+||++|+++...+
T Consensus 8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAF 87 (219)
T KOG0081|consen 8 YLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAF 87 (219)
T ss_pred HHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHH
Confidence 346889999999999999999999998765 45666665321 11 23679999999999999999999
Q ss_pred hcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCccccC
Q 031796 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSLRQR 151 (153)
Q Consensus 82 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~~~~ 151 (153)
++.+-+++++||+++.+||.++..|+.++..+....++-+|+.|||+|+.+.. ++.++++++|+++|+..
T Consensus 88 fRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETS 162 (219)
T KOG0081|consen 88 FRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETS 162 (219)
T ss_pred HHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeec
Confidence 99999999999999999999999999999888777788899999999998753 57889999999999753
No 86
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.93 E-value=1.2e-24 Score=149.38 Aligned_cols=130 Identities=21% Similarity=0.509 Sum_probs=102.1
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcc--cccCceeeEEEE--EEE--cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~--~~~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 91 (153)
+||+++|++|||||||++++.+..+. ...+|.+.++.. +.. ..+.+.+||+||++++...+..+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999999988875 335565544432 333 347899999999999999889999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC-----CCHhHHHHHhCCCcc
Q 031796 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSL 148 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~-----~~~~~~~~~~~~~~~ 148 (153)
+|+++.+++..+..|+..+... ....+|+++|+||+|+... .+.+.+++.++.+++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~ 141 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEY-AQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFM 141 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEE
Confidence 9999999999998887776543 2347899999999999632 234566666665544
No 87
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.93 E-value=1.8e-24 Score=144.57 Aligned_cols=113 Identities=20% Similarity=0.367 Sum_probs=92.4
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEEE----EEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~~----~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (153)
+||+++|++|||||||++++.+..+.+. .++...... ......+.+.+|||+|++.+...+..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999998887643 344443322 22234578999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
|.+++.++..+..|+..+... .++.|+++|+||+|+..
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~ 118 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDP 118 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCch
Confidence 999999999988887776443 24789999999999854
No 88
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.93 E-value=1.5e-24 Score=144.57 Aligned_cols=128 Identities=20% Similarity=0.422 Sum_probs=100.3
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEE--EEEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCEEEEEE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~--~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (153)
+||+++|+++||||||++++.+.++.. ..++.+.++. .+...+ ..+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 489999999999999999999988763 3555554443 333333 67999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCC
Q 031796 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLH 146 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~ 146 (153)
|++++++|..+..|+..+..... .+.|+++++||+|+.... ....+++..+..
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 138 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAM 138 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHHHHhCCE
Confidence 99999999999988888765432 369999999999994332 234444554444
No 89
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.93 E-value=1.1e-24 Score=146.09 Aligned_cols=115 Identities=16% Similarity=0.304 Sum_probs=92.9
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEEE---EEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (153)
+||+++|++|||||||++++.++.+... .||.+..+. ......+.+.+||+||++++...+..+++.+|++++|||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 7899999999999999999999887633 454443332 222344789999999999999998889999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcC--CCCCCceEEEEEeCCCccC
Q 031796 94 SNDRDRVVEARDELHRMLNE--DELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~--~~~~~~pii~v~~K~Dl~~ 132 (153)
+++.+++..+..|+..+... ...+++|+++|+||+|+..
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (165)
T cd04140 82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH 122 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence 99999999988887655332 2236799999999999975
No 90
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.93 E-value=2.3e-24 Score=144.40 Aligned_cols=131 Identities=22% Similarity=0.452 Sum_probs=102.3
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCCcc-cccCceeeEEE--EEEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCEEEEE
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 91 (153)
.+|++++|+++||||||++++.+..+. .+.|+.+.++. .+...+ ..+.+||+||++++...+..++++++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 479999999999999999999988866 34566655443 333333 6899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
||+++++++..+..|+..+.... ..+.|+++|+||+|+.... +...+++..+..++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 143 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFI 143 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEE
Confidence 99999999999998887765543 2468999999999997532 23445554444433
No 91
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.93 E-value=1.4e-24 Score=146.08 Aligned_cols=131 Identities=18% Similarity=0.367 Sum_probs=103.1
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEE--EEE--EcCeEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~--~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
...+||+++|+++||||||++++.++.+.+ ..++.+.+.. .+. ...+.+.+||+||++++...+..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 355899999999999999999999888764 3556655432 233 34468899999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCC---CCCCceEEEEEeCCCccCCC----CHhHHHHHhCC
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPNAM----NAAEITDKLGL 145 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~pii~v~~K~Dl~~~~----~~~~~~~~~~~ 145 (153)
+|||+++.+++..+..|...+.... ...++|+++|+||+|+.... +.++++++++.
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 145 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGD 145 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCC
Confidence 9999999999999988887765432 23568999999999996422 34556666653
No 92
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.93 E-value=1.6e-24 Score=145.83 Aligned_cols=131 Identities=20% Similarity=0.394 Sum_probs=102.5
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEE--EEEEEc--CeEEEEEEcCCCCCchhcHHHhhcCCCEEEEE
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 91 (153)
-+||+++|++|+|||||++++.+..+... .++.+.+. ..+... ...+.+||+||++++......+++++|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999876643 34544443 223333 36899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|+++++++..+..|+..+.... .++.|+++|+||.|+..+. +...++...++.++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 144 (168)
T cd01866 84 YDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFM 144 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEE
Confidence 99999999999998888775432 3679999999999997432 23445556665554
No 93
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.93 E-value=1.3e-24 Score=145.00 Aligned_cols=131 Identities=25% Similarity=0.463 Sum_probs=103.0
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEE--EEEE--cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (153)
+|++++|++++|||||++++.+..+.. ..++.+.++. .+.. ....+.+||+||++.+......+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999987753 4555554432 2333 3378999999999999988899999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC----CHhHHHHHhCCCcc
Q 031796 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSL 148 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~----~~~~~~~~~~~~~~ 148 (153)
|.++++++.....|+..+.......+.|+++|+||+|+.... +..++++..+++.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 140 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFI 140 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEE
Confidence 999999999988887777655555789999999999997332 34455555555443
No 94
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.92 E-value=4.4e-24 Score=142.56 Aligned_cols=130 Identities=23% Similarity=0.513 Sum_probs=101.9
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEE--EEEEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCEEEEEE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (153)
+||+++|++++|||||++++.+..+... .++.+.++ ..+...+ ..+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 5899999999999999999998876533 45555443 3344443 68999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
|++++.++..+..|+..+.... .+++|+++|+||+|+.... ..+++++..+...+
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~-~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 140 (164)
T smart00175 81 DITNRESFENLKNWLKELREYA-DPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFF 140 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEE
Confidence 9999999999888777665443 2589999999999987632 24455566665543
No 95
>PLN03118 Rab family protein; Provisional
Probab=99.92 E-value=3.2e-24 Score=149.32 Aligned_cols=134 Identities=25% Similarity=0.479 Sum_probs=104.2
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEE--EEEE--cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 90 (153)
...+||+++|++|+|||||++++.+..+....++.+.... .+.. ..+.+.+|||||++++...+..+++++|++++
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl 91 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL 91 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 4568999999999999999999998887666666665443 3333 34689999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcC-CCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 91 VVDSNDRDRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
|||++++++|..+...|...+.. ....+.|+++|+||+|+.... ...++++..+..++
T Consensus 92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~ 155 (211)
T PLN03118 92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFL 155 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEE
Confidence 99999999999998766655443 223568999999999997532 23345555555544
No 96
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.92 E-value=1.3e-24 Score=146.72 Aligned_cols=111 Identities=20% Similarity=0.334 Sum_probs=88.6
Q ss_pred EEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEEE-EEEE--cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECC
Q 031796 20 ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (153)
Q Consensus 20 i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 95 (153)
|+++|++|||||||++++.++.+... .++....+. .+.. ..+.+.+|||||++.+...+..+++.+|++++|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 58999999999999999999887643 444433332 2333 3467999999999999999999999999999999999
Q ss_pred CcccHHHHHH-HHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 96 DRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 96 ~~~s~~~~~~-~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
++++|..+.. |+..+... .++.|+++|+||+|+..
T Consensus 81 ~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~ 116 (174)
T smart00174 81 SPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLRE 116 (174)
T ss_pred CHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhh
Confidence 9999999875 44444332 25799999999999975
No 97
>PLN03110 Rab GTPase; Provisional
Probab=99.92 E-value=3e-24 Score=150.00 Aligned_cols=133 Identities=24% Similarity=0.459 Sum_probs=105.5
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcc-cccCceeeEEE--EEEE--cCeEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
...+||+++|++|||||||++++.+..+. ...+|.+.++. .+.. ..+.+.+||++|++++...+..+++.+++++
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i 89 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence 35589999999999999999999998876 44567766553 3333 3478999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|||++++++|..+..|+..+... ...++|+++|+||+|+.... ....+++..+..++
T Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~ 152 (216)
T PLN03110 90 LVYDITKRQTFDNVQRWLRELRDH-ADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFL 152 (216)
T ss_pred EEEECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEE
Confidence 999999999999998888776443 33579999999999986532 34445555555444
No 98
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.92 E-value=2.5e-24 Score=145.45 Aligned_cols=113 Identities=17% Similarity=0.275 Sum_probs=89.0
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEE--EEEEE--cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~--~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (153)
+|++++|++|+|||||++++.++.+....+++..+. ..+.. ..+.+.+||+||++++...+..+++++|++++|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 589999999999999999999888775433322222 22233 34688999999999999999889999999999999
Q ss_pred CCCcccHHHHHH-HHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 94 SNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 94 ~~~~~s~~~~~~-~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
++++++|..... |+..+... .++.|+++|+||+|+..
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~ 118 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRT 118 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhcc
Confidence 999999998864 55444332 24689999999999864
No 99
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.92 E-value=5.3e-25 Score=145.31 Aligned_cols=135 Identities=16% Similarity=0.336 Sum_probs=109.8
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEEE----EEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~~----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
+..+||+++|++|+|||||++++.+.+|.. ...|++.++.+ ++...+-+++|||+||++|.++...+++.+|+.+
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 445999999999999999999999999874 46677766643 3334478999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCC---CCCceEEEEEeCCCccCCC-------CHhHHHHHh-CCCccc
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDE---LRDAVLLVFANKQDLPNAM-------NAAEITDKL-GLHSLR 149 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~pii~v~~K~Dl~~~~-------~~~~~~~~~-~~~~~~ 149 (153)
+|||..++.+|..+..|-.+++.+.. ....|+|++|||+|+.+.. .++++++.- ..++|+
T Consensus 87 lvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfE 157 (210)
T KOG0394|consen 87 LVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFE 157 (210)
T ss_pred EEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEE
Confidence 99999999999999999999987653 2468999999999997632 355555544 344443
No 100
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.92 E-value=7e-24 Score=141.80 Aligned_cols=114 Identities=18% Similarity=0.311 Sum_probs=92.9
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC--Ccc-cccCceeeEEEE--EE---EcCeEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG--EIV-TTIPTIGFNVET--VE---YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~--~~~-~~~~t~~~~~~~--~~---~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
+||+++|++|||||||++++... .+. ...+|.+.++.. +. .....+.+||+||++.+..++..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 454 335666655432 22 23479999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
+|+|+++++++..+..|+..+.... .+.|+++|+||+|+...
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~ 122 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADK 122 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccc
Confidence 9999999999998888887765442 56899999999999654
No 101
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3.3e-25 Score=140.93 Aligned_cols=153 Identities=59% Similarity=0.989 Sum_probs=143.4
Q ss_pred CchhHHHHHhhhccc-CccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHH
Q 031796 1 MGLSFTKLFSRLFAK-KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 79 (153)
Q Consensus 1 ~~~~~~~~~~~~~~~-~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 79 (153)
|+.+++++|+..... +..+++++|-.|+||+|+..++.-.+...+.||++++..++.+..+++.+||..|+-+.+..|.
T Consensus 1 m~~g~~s~f~~L~g~e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWR 80 (182)
T KOG0072|consen 1 MGGGFSSLFKALQGPEREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWR 80 (182)
T ss_pred CCchHHHHHHHhcCCccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHH
Confidence 677899999988887 8899999999999999999998877778899999999999999999999999999999999999
Q ss_pred HhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCCCccccCCC
Q 031796 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153 (153)
Q Consensus 80 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~ 153 (153)
.++.+.|++|+|+|.+|.+........+..++++...++..+++++||.|........|....+++..+++|-|
T Consensus 81 cYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~ 154 (182)
T KOG0072|consen 81 CYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIW 154 (182)
T ss_pred HHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhhee
Confidence 99999999999999999999998889999999988888899999999999999998999999999999998866
No 102
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.92 E-value=5.8e-24 Score=145.96 Aligned_cols=113 Identities=19% Similarity=0.357 Sum_probs=93.3
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCccc--ccCceeeEEE--EEEEc--CeEEEEEEcCCCCCchhcHHHhhcCCCEEEEE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~--~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 91 (153)
+||+++|++|+|||||++++.++++.. +.+|.+..+. .+... .+.+.+||++|++++...+..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999988763 5666665442 33333 36788999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
||++++.++..+..|+..+... .++.|+++|+||+|+..
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~ 119 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIE 119 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccc
Confidence 9999999999888777766443 24789999999999864
No 103
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.92 E-value=4.9e-24 Score=151.44 Aligned_cols=126 Identities=19% Similarity=0.297 Sum_probs=98.8
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCccc-ccCcee-eEEEEEEE--cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG-FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~-~~~~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (153)
+||+++|+.|||||||++++.++.+.. +.+|+. .....+.. ..+.+.+|||+|++.|..++..++..+|++++|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 589999999999999999999888864 345553 22233333 34789999999999999888888999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcC--------CCCCCceEEEEEeCCCccC--CCCHhHHHHHh
Q 031796 94 SNDRDRVVEARDELHRMLNE--------DELRDAVLLVFANKQDLPN--AMNAAEITDKL 143 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~--------~~~~~~pii~v~~K~Dl~~--~~~~~~~~~~~ 143 (153)
+++.++|..+..|+..+... ....+.|+++|+||+|+.. +...+++.+..
T Consensus 81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~ 140 (247)
T cd04143 81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLV 140 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHH
Confidence 99999999998888877543 1235799999999999974 33455554443
No 104
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.92 E-value=4.2e-24 Score=143.46 Aligned_cols=117 Identities=15% Similarity=0.264 Sum_probs=92.0
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEE-E--EEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEEC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV-E--TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~-~--~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (153)
+|++++|.+|+|||||++++.++++....++..... . .+....+++.+|||||++.+...+..+++.+|++++|||+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 489999999999999999999988865444322221 1 2223557899999999998888777888999999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCC
Q 031796 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (153)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~ 135 (153)
+++.++..+..+|...+.... .+.|+++|+||+|+.+...
T Consensus 81 ~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~ 120 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSS 120 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccc
Confidence 999999998766655544332 4799999999999976543
No 105
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.92 E-value=4.3e-24 Score=147.39 Aligned_cols=124 Identities=24% Similarity=0.374 Sum_probs=98.6
Q ss_pred EcCCCCCHHHHHHhHhcCCccc-ccCceeeEEEEEEE----cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCc
Q 031796 23 VGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (153)
Q Consensus 23 ~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 97 (153)
+|..|||||||++++..+.+.. ..+|.+.+...... ..+++.+|||+|+++|..++..+++++|++++|||+++.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 5999999999999999888764 46777766644332 358999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-C--HhHHHHHhCCCcc
Q 031796 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-N--AAEITDKLGLHSL 148 (153)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-~--~~~~~~~~~~~~~ 148 (153)
.+|..+..|+..+.+.. .++|+++||||+|+.... . ...+++..++.++
T Consensus 81 ~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~ 132 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSITFHRKKNLQYY 132 (200)
T ss_pred HHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHHHHHHHcCCEEE
Confidence 99999988777775532 579999999999986432 1 2244555555444
No 106
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.92 E-value=7.1e-24 Score=141.46 Aligned_cols=109 Identities=15% Similarity=0.243 Sum_probs=87.1
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcccccCc-eeeEEEEEEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEEC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPT-IGFNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t-~~~~~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (153)
+||+++|+.|||||||++++..+.+....++ .+.....+...+ +.+.+||++|++. ..+++.+|++++|||+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~ 75 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSL 75 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEEC
Confidence 5899999999999999999998877654333 222223344444 7799999999975 3456889999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031796 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~ 131 (153)
+++++|.++..|+..+.......++|+++||||+|+.
T Consensus 76 ~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~ 112 (158)
T cd04103 76 ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAIS 112 (158)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhh
Confidence 9999999999988887665444679999999999985
No 107
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.92 E-value=2.4e-24 Score=148.25 Aligned_cols=129 Identities=16% Similarity=0.278 Sum_probs=95.1
Q ss_pred ccEEEEEcCCCCCHHHHHH-hHhcCCc-----c-cccCceee-E-EE-----------EEEEcCeEEEEEEcCCCCCchh
Q 031796 17 EMRILMVGLDAAGKTTILY-KLKLGEI-----V-TTIPTIGF-N-VE-----------TVEYKNISFTVWDVGGQDKIRP 76 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~-~~~~~~~-----~-~~~~t~~~-~-~~-----------~~~~~~~~~~i~D~~g~~~~~~ 76 (153)
.+||+++|+.|||||||+. ++.+..+ . ...||++. + +. .++...+.+.+|||+|++..
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4799999999999999995 6655433 2 23566642 1 11 23344589999999999753
Q ss_pred cHHHhhcCCCEEEEEEECCCcccHHHHHH-HHHHHHcCCCCCCceEEEEEeCCCccCC----------------------
Q 031796 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPNA---------------------- 133 (153)
Q Consensus 77 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~pii~v~~K~Dl~~~---------------------- 133 (153)
....+++++|++++|||++++.+|..+.. |+..+ .... ++.|+++||||+|+.+.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i-~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEI-RHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHH-HHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 44567899999999999999999999975 54444 3322 47899999999998641
Q ss_pred --CCHhHHHHHhCCCccc
Q 031796 134 --MNAAEITDKLGLHSLR 149 (153)
Q Consensus 134 --~~~~~~~~~~~~~~~~ 149 (153)
++.+++++++|..+++
T Consensus 158 ~~~e~~~~a~~~~~~~~E 175 (195)
T cd01873 158 PPETGRAVAKELGIPYYE 175 (195)
T ss_pred CHHHHHHHHHHhCCEEEE
Confidence 2467788888887664
No 108
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.92 E-value=6.3e-24 Score=142.82 Aligned_cols=116 Identities=18% Similarity=0.370 Sum_probs=95.1
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEE-EEEEE--cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~-~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (153)
+|++++|++|+|||||++++.++.+... .+|....+ ..+.. ...++.+||+||+++|..++..+++.++++++|||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~ 81 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYS 81 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEE
Confidence 6899999999999999999998887643 44544332 22233 33788999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
.++++++.....|...+.......+.|+++++||+|+...
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~ 121 (168)
T cd04177 82 VTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDD 121 (168)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcccc
Confidence 9999999999888777765444467999999999999754
No 109
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.92 E-value=3.3e-24 Score=143.70 Aligned_cols=130 Identities=17% Similarity=0.290 Sum_probs=96.3
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeE-E--EEEEEcCeEEEEEEcCCCCCc-hhcHHHhhcCCCEEEEEEE
Q 031796 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN-V--ETVEYKNISFTVWDVGGQDKI-RPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~-~--~~~~~~~~~~~i~D~~g~~~~-~~~~~~~~~~~~~~i~v~d 93 (153)
||+++|++|+|||||++++..+.+... .++.... . ..++...+.+.+||+||++.+ ......+++.+|++++|||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 589999999999999999998776533 3433211 1 223334467999999999853 4456778899999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCC-CCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 94 SNDRDRVVEARDELHRMLNEDE-LRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~-~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
++++++|..+..|+..+..... ..+.|+++|+||+|+.... +...+++.++..++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 141 (165)
T cd04146 81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFF 141 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEE
Confidence 9999999998887766554322 3579999999999986432 24566777776654
No 110
>PLN03108 Rab family protein; Provisional
Probab=99.91 E-value=8.6e-24 Score=147.11 Aligned_cols=132 Identities=20% Similarity=0.387 Sum_probs=104.5
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEE--EEEE--cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEE
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 90 (153)
..+||+++|++|+|||||++++.+..+.. ..+|.+.++. .+.. ..+.+.+||++|++.+...+..+++.+|++++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl 84 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 45899999999999999999999887764 3556655442 2333 34678999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
|||++++++|..+..|+..+.... ...+|+++|+||+|+.+.. +.++++++.+..++
T Consensus 85 v~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 146 (210)
T PLN03108 85 VYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFM 146 (210)
T ss_pred EEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEE
Confidence 999999999999988877764432 3579999999999997532 34567777776554
No 111
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.91 E-value=5e-24 Score=135.28 Aligned_cols=139 Identities=48% Similarity=0.852 Sum_probs=130.5
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcC-eEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (153)
.+.++++++|-.++|||||++.+.+.....-.||.+++...+.+.+ ..+++||..|+...+..|..|+.+.|++|||+|
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVID 94 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVID 94 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEEe
Confidence 7889999999999999999999988766666889999999999877 899999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCCCccccCCC
Q 031796 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~ 153 (153)
.+|...|+++...+.+++........|+.+..||.|+..+...++++..+++..+++|.|
T Consensus 95 S~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRsw 154 (185)
T KOG0074|consen 95 STDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSW 154 (185)
T ss_pred CCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceE
Confidence 999999999999999999888889999999999999999999999999999999999877
No 112
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.91 E-value=1.5e-23 Score=141.00 Aligned_cols=115 Identities=18% Similarity=0.379 Sum_probs=91.6
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEE--EEEEEc--CeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (153)
+||+++|++|||||||++++.+..+... .++.+.++ ..+... .+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999876533 34444433 223333 367889999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCC---CCCceEEEEEeCCCccC
Q 031796 93 DSNDRDRVVEARDELHRMLNEDE---LRDAVLLVFANKQDLPN 132 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~---~~~~pii~v~~K~Dl~~ 132 (153)
|+++++++.+...|...++.... ..+.|+++|+||+|+..
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence 99999999888777665544322 34799999999999973
No 113
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.91 E-value=1.6e-23 Score=141.42 Aligned_cols=115 Identities=18% Similarity=0.252 Sum_probs=91.7
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEE-EEEEEc--CeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~-~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (153)
+||+++|++|+|||||++++..+.+... .++....+ ..+... .+.+.+||+||++.+...+..+++++|++++|||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 5899999999999999999999887643 44443222 223333 3568899999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
.+++++|..+...|...+... .++.|+++|+||+|+.+.
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~ 119 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDD 119 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcC
Confidence 999999999876555554443 468999999999998653
No 114
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.91 E-value=3.5e-23 Score=145.04 Aligned_cols=129 Identities=18% Similarity=0.199 Sum_probs=95.8
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcc--cccCcee--eEEEEEE--EcCeEEEEEEcCCCCCchhcHHHhhc-CCCEEEE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIG--FNVETVE--YKNISFTVWDVGGQDKIRPLWRHYFQ-NTQGLIF 90 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~--~~~~t~~--~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~-~~~~~i~ 90 (153)
+||+++|++|||||||++++..+.+. ...++.+ .....+. .....+.+||+||++ ......+++ ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999887764 3334442 2223333 345789999999998 334455667 8999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
|||++++++|.....|+..+.......+.|+++|+||+|+.... ....+++.++..++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~ 141 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFI 141 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEE
Confidence 99999999999998888777554444679999999999996543 23455666665544
No 115
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.91 E-value=5.7e-23 Score=136.73 Aligned_cols=115 Identities=23% Similarity=0.442 Sum_probs=91.7
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEE--EEEEE--cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~--~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (153)
+||+++|++|+|||||++++.++.+... .++..... ..+.. ....+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 5899999999999999999998877533 33332222 22332 3367999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
|+++.+++.....|+..+..... .++|+++|+||+|+...
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~ 120 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQ 120 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccc
Confidence 99999999998887776644332 37999999999999754
No 116
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.91 E-value=3.8e-23 Score=142.65 Aligned_cols=116 Identities=20% Similarity=0.261 Sum_probs=89.7
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEE--EEEEEcC--eEEEEEEcCCCCCchhc--------HHHhhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPL--------WRHYFQN 84 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~--------~~~~~~~ 84 (153)
+||+++|.+|||||||++++.++.+.. ..||++... ..+...+ +.+.+|||||.+.+... ....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 589999999999999999999988764 456655332 2333333 78899999997654221 2344789
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHHcCC--CCCCceEEEEEeCCCccCC
Q 031796 85 TQGLIFVVDSNDRDRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 85 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~pii~v~~K~Dl~~~ 133 (153)
+|++++|||++++++|..+..|+..+.... ...++|+++|+||+|+...
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~ 131 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRH 131 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccc
Confidence 999999999999999999988888776543 2467999999999999654
No 117
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.91 E-value=2.7e-23 Score=138.62 Aligned_cols=131 Identities=19% Similarity=0.390 Sum_probs=102.6
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEE---EEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV---ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~---~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (153)
+||+++|++|+|||||++++....+... .++....+ ...+...+.+.+||+||++.+...+..+++.++++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 5899999999999999999998877633 33333222 1223344789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC--CC---HhHHHHHhCCCcc
Q 031796 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MN---AAEITDKLGLHSL 148 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~--~~---~~~~~~~~~~~~~ 148 (153)
++++.++.....|+..+.......+.|+++|+||+|+... .. ...+++.++.+++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 140 (164)
T cd04139 81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYV 140 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEE
Confidence 9999999999999998877644568999999999999762 22 2355556665544
No 118
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.91 E-value=3.1e-23 Score=139.41 Aligned_cols=116 Identities=22% Similarity=0.359 Sum_probs=91.1
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcc-cccCceeeEE-E--EEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-E--TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~-~~~~t~~~~~-~--~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (153)
+||+++|++|+|||||++++.+.++. ...++..... . ......+.+.+||+||++++.......++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999998874 3334333222 1 222345789999999999988888888899999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
++++.+|......|...+.... .+.|+++|+||+|+....
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~ 120 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDE 120 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhch
Confidence 9999999887776665544432 479999999999997654
No 119
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.90 E-value=2.4e-23 Score=140.62 Aligned_cols=116 Identities=21% Similarity=0.377 Sum_probs=91.1
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEE-EEEEE--cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEE
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (153)
+.||+++|++|||||||++++.++.+.. +.||..... ..+.. ..+.+.+|||+|++.+...+...++++|++++||
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 3689999999999999999999988764 345544332 23333 3468899999999999888888889999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
|+++.++|..+...|...+.+. ..+.|+++|+||+|+...
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~ 120 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRND 120 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhcccC
Confidence 9999999988866444443332 247899999999998653
No 120
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.90 E-value=3.3e-23 Score=140.70 Aligned_cols=129 Identities=22% Similarity=0.351 Sum_probs=101.8
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeE-EEEEEEc--CeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (153)
.||+++|++|+|||||++++.+..+.. ..|+.... ...+... .+.+.+||+||++++...+..++..++++++|||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 689999999999999999999887764 34444322 2333333 3678999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCC
Q 031796 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLH 146 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~ 146 (153)
.++..++..+..++..+++.....+.|+++++||+|+.... +...+++.++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 139 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAA 139 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCe
Confidence 99999999999999988876555678999999999987432 233455555543
No 121
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.90 E-value=2.8e-24 Score=138.92 Aligned_cols=135 Identities=21% Similarity=0.380 Sum_probs=108.6
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeE----EEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN----VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~----~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
.-++|++++|+.-+|||||+-|+...+|... ..|.... ...+......+.||||+|+++|..+-+.|++..|+++
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal 90 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL 90 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence 3468999999999999999999998887633 2222221 2223334578999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC-----CCHhHHHHHhCCCcccc
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLRQ 150 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~-----~~~~~~~~~~~~~~~~~ 150 (153)
+|||++|.+||..++.|..++... ....+.+++||||+|+..+ .+++..++.-|..+++.
T Consensus 91 LVyDITDrdSFqKVKnWV~Elr~m-lGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eT 155 (218)
T KOG0088|consen 91 LVYDITDRDSFQKVKNWVLELRTM-LGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMET 155 (218)
T ss_pred EEEeccchHHHHHHHHHHHHHHHH-hCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheec
Confidence 999999999999999999887443 3367889999999999765 35677888888877653
No 122
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.90 E-value=1.6e-22 Score=133.72 Aligned_cols=113 Identities=24% Similarity=0.501 Sum_probs=95.0
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEEEEEEE----cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (153)
+||+++|++++|||||++++.+..+... .+|.+.+...... ....+.+||+||+..+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999887754 5666665544332 3478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031796 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~ 131 (153)
|+++++++..+..|+..+.... ....|+++++||+|+.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYA-PENIPIILVGNKIDLE 118 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEccccc
Confidence 9999999999888777765543 2579999999999995
No 123
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.90 E-value=8.2e-23 Score=141.48 Aligned_cols=123 Identities=31% Similarity=0.433 Sum_probs=97.3
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEE----cCeEEEEEEcCCCCCchhcHHHhhcCC-CEEEEEEE
Q 031796 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNT-QGLIFVVD 93 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~-~~~i~v~d 93 (153)
+++++|+++||||||++++....+..+.+++..+...... ....+.+||+||+.+++..+..+++.+ +++++|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 6899999999999999999998877665555444444333 367899999999999999888899998 99999999
Q ss_pred CCCc-ccHHHHHHHHHHHHcCC--CCCCceEEEEEeCCCccCCCCHhHHHH
Q 031796 94 SNDR-DRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAMNAAEITD 141 (153)
Q Consensus 94 ~~~~-~s~~~~~~~~~~~~~~~--~~~~~pii~v~~K~Dl~~~~~~~~~~~ 141 (153)
+++. +++.....++..++... ..+.+|+++++||+|+..+...+.+.+
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~ 132 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKE 132 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHH
Confidence 9987 67888888877765432 225799999999999987655443333
No 124
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.7e-23 Score=133.16 Aligned_cols=135 Identities=23% Similarity=0.399 Sum_probs=115.3
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCccccc-CceeeEEE----EEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEE
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVE----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~-~t~~~~~~----~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 88 (153)
.+.-+|-+++|+-|+|||+|++.|...+|...- .|+++++. .+.++.+++++|||.|+++|+....++++.+.+.
T Consensus 8 ysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaaga 87 (215)
T KOG0097|consen 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 87 (215)
T ss_pred hhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence 355689999999999999999999999887654 47776654 3456779999999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCccc
Q 031796 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSLR 149 (153)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~~ 149 (153)
++|||++..+++..+..|+... +....++..++++|||.|+..+. ++.+++++-|+.+++
T Consensus 88 lmvyditrrstynhlsswl~da-r~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle 152 (215)
T KOG0097|consen 88 LMVYDITRRSTYNHLSSWLTDA-RNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLE 152 (215)
T ss_pred eEEEEehhhhhhhhHHHHHhhh-hccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEE
Confidence 9999999999999999999887 33455788899999999998764 477889988888765
No 125
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.90 E-value=2.4e-23 Score=132.45 Aligned_cols=109 Identities=25% Similarity=0.446 Sum_probs=80.9
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCCcc---cc----cCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEE
Q 031796 19 RILMVGLDAAGKTTILYKLKLGEIV---TT----IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~~~---~~----~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 91 (153)
||+|+|++|||||||++++.+..+. .. ..+..............+.+||++|++.+...+...+.++|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999988765 11 1223333333333444699999999998888877779999999999
Q ss_pred EECCCcccHHHHHHH---HHHHHcCCCCCCceEEEEEeCCC
Q 031796 92 VDSNDRDRVVEARDE---LHRMLNEDELRDAVLLVFANKQD 129 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~---~~~~~~~~~~~~~pii~v~~K~D 129 (153)
||.++++++..+..+ +..+... ..++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 999999999887544 4444321 24699999999998
No 126
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.90 E-value=1.5e-22 Score=139.66 Aligned_cols=114 Identities=18% Similarity=0.291 Sum_probs=93.9
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCCcccc-cCcee-eEEEEEEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEEC
Q 031796 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~-~~~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (153)
||+++|.+|||||||++++.+..+... .++.. .....+...+ +.+.+||+||+..+...+..+++.+|++++|||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 689999999999999999999887643 33332 2223344444 7899999999999999888899999999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
+++.++.....|+..+.......+.|+++|+||+|+..
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLE 118 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccc
Confidence 99999999988888776655446799999999999965
No 127
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.89 E-value=3.2e-22 Score=132.90 Aligned_cols=128 Identities=22% Similarity=0.394 Sum_probs=99.8
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCCcccc-cCcee-eEEEEEEEc--CeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEEC
Q 031796 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-FNVETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~-~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (153)
||+++|++|||||||++++.+..+... .++.. .....+... .+.+.+||+||++.+...+..+++.+|++++|+|.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 689999999999999999998776533 33333 122233333 47899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCC
Q 031796 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLH 146 (153)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~ 146 (153)
++++++.....++..+.........|+++|+||+|+.... ....+++..+.+
T Consensus 81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 137 (160)
T cd00876 81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCP 137 (160)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCc
Confidence 9999999999998888766544689999999999997632 234455555533
No 128
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.89 E-value=3.3e-22 Score=139.53 Aligned_cols=133 Identities=25% Similarity=0.392 Sum_probs=104.2
Q ss_pred cccCccEEEEEcCCCCCHHHHHHhHhcCCcc-cccCceeeEEEEEEE----cCeEEEEEEcCCCCCchhcHHHhhcCCCE
Q 031796 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (153)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 87 (153)
.....+|++++|++|||||||++++..+.+. ...+|.+.++..... ..+.+.+||++|++.+...+..+++.+++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 3466799999999999999999988877765 446777766655433 44799999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCC---HhHHHHHhCCCc
Q 031796 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHS 147 (153)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~---~~~~~~~~~~~~ 147 (153)
+++|||+++..+|..+..|+..+.... .++|+++++||+|+..... ...+++..++.+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 145 (215)
T PTZ00132 85 AIIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQY 145 (215)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHHHHHHcCCEE
Confidence 999999999999999988877765432 4789999999999865432 223444444443
No 129
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.89 E-value=1.4e-24 Score=136.66 Aligned_cols=129 Identities=20% Similarity=0.487 Sum_probs=107.9
Q ss_pred EEEcCCCCCHHHHHHhHhcCCcccc--cCceeeEEEE----EEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEEC
Q 031796 21 LMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (153)
Q Consensus 21 ~v~G~~~~GKSsli~~~~~~~~~~~--~~t~~~~~~~----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (153)
+++|++++|||+|+-|+..+.|... ..|.++++.. +....+++++|||+||++|++....+++.+|+.+++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 3689999999999999888776532 4577776643 333558999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC-----CCHhHHHHHhCCCcccc
Q 031796 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLRQ 150 (153)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~-----~~~~~~~~~~~~~~~~~ 150 (153)
++..||++.+.|+.++-+ +......++++|||||+.++ .+.+.+++.+|+++++.
T Consensus 81 ankasfdn~~~wlsei~e-y~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmet 140 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHE-YAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMET 140 (192)
T ss_pred ccchhHHHHHHHHHHHHH-HHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceec
Confidence 999999999999998743 33356889999999999653 46889999999998865
No 130
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.89 E-value=1.8e-23 Score=141.49 Aligned_cols=134 Identities=18% Similarity=0.316 Sum_probs=110.3
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEE---EEEE-EcCeEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV---ETVE-YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~---~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
...+|++++|+.++|||+++..+..+.|+.. .||..-++ ..+. +..+.+.+|||+||++|...++-.++++|+++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 3568999999999999999999988888844 56655333 3342 56689999999999999998888899999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC-----------------CCHhHHHHHhCCCccc
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----------------MNAAEITDKLGLHSLR 149 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~-----------------~~~~~~~~~~~~~~~~ 149 (153)
+||++.+++||.++...|.+.+.+.. ++.|+|+||+|.||++. ++..++++++|+..+-
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~ 157 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYL 157 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceee
Confidence 99999999999999888888777655 88999999999999843 2467788888865443
No 131
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.89 E-value=1.1e-21 Score=131.82 Aligned_cols=118 Identities=24% Similarity=0.432 Sum_probs=93.5
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEE--EEEEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
+..+|++++|++|+|||||++++..+.+.. ..++.+.+. ..+...+ ..+.+||+||++.+...+..+++.+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 345899999999999999999998776653 345554333 2344444 67899999999999999899999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
+|+|+++..++..+..|+..+.. ....+.|+++|+||+|+...
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~~~i~v~NK~D~~~~ 127 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQ-YANNKVITILVGNKIDLAER 127 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHH-hCCCCCeEEEEEECcccccc
Confidence 99999999999888777665432 22347999999999999754
No 132
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.89 E-value=1.4e-22 Score=139.11 Aligned_cols=133 Identities=22% Similarity=0.371 Sum_probs=111.2
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeE---EEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEE
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~---~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 91 (153)
+.+|++++|.+|+|||+++.+|....|... .||+.-. ...++.....+.|+||+|++++..+...+++.+|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 468999999999999999999999988844 5665532 234444557899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC-----CCHhHHHHHhCCCcc
Q 031796 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSL 148 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~-----~~~~~~~~~~~~~~~ 148 (153)
|++++..||+.+...+..+.+......+|+++||||+|+... ++.+.++...+..++
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~ 143 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFI 143 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEE
Confidence 999999999999999999976666677999999999999873 235566777777744
No 133
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.87 E-value=1.1e-21 Score=134.27 Aligned_cols=115 Identities=21% Similarity=0.356 Sum_probs=87.6
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEE-EEEEE--cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEE
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~-~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (153)
+.|++++|++|+|||||++++..+.+... .++....+ ..+.. ....+.+||++|++.+.......++++|+++++|
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 36899999999999999999987766533 34433222 12222 3367899999999988877777789999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
|+++.++|..+...|...+... .++.|+++|+||+|+.+
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~-~~~~piilvgnK~Dl~~ 119 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRY-CPNVPVILVGLKKDLRQ 119 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEeeChhhhh
Confidence 9999999999876444443332 24699999999999854
No 134
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.86 E-value=7.4e-21 Score=132.83 Aligned_cols=119 Identities=32% Similarity=0.467 Sum_probs=95.4
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEEEEEEE--c--CeEEEEEEcCCCCCchhcHHHhhcCCCEEEEE
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEY--K--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~~~~~~--~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 91 (153)
.+||+++|+.|+|||||++++....+... .+|....+..... . ..++.+|||+|+++++..+..++..++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 38999999999999999999999988754 4454544433222 2 46799999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCC
Q 031796 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~ 135 (153)
+|.++..++.+....|...+........|+++++||+|+.....
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~ 128 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQS 128 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchh
Confidence 99999777766666666555544335699999999999987653
No 135
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.8e-21 Score=127.57 Aligned_cols=143 Identities=40% Similarity=0.754 Sum_probs=124.2
Q ss_pred hhHHHHHhhhcccCccEEEEEcCCCCCHHHHHHhHhcCC---c-----ccccCceeeEEEEEEEcCeEEEEEEcCCCCCc
Q 031796 3 LSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGE---I-----VTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (153)
Q Consensus 3 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~~~~~~---~-----~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (153)
..++.+++.-+.+..+.++++|..++|||||+.+..... + ..-.+|.+.+..++......+.+||..|++..
T Consensus 3 tl~~gl~~~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~l 82 (197)
T KOG0076|consen 3 TLMSGLYKYMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQESL 82 (197)
T ss_pred hHHHHHHHHHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHHH
Confidence 345667777777889999999999999999998764322 1 12257889999999988999999999999999
Q ss_pred hhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCC
Q 031796 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL 145 (153)
Q Consensus 75 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~ 145 (153)
+++|..++..+|++++++|+++++.|......+............|+++.+||.|+++..+++++..-+++
T Consensus 83 rSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~ 153 (197)
T KOG0076|consen 83 RSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGL 153 (197)
T ss_pred HHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhh
Confidence 99999999999999999999999999999998888887777789999999999999999998888888774
No 136
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.85 E-value=3.6e-20 Score=124.42 Aligned_cols=117 Identities=26% Similarity=0.288 Sum_probs=82.4
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCCcc-cc--cCceeeEEEEEEEcCe-EEEEEEcCCCCC----chhcHHHh---hcCCCE
Q 031796 19 RILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKNI-SFTVWDVGGQDK----IRPLWRHY---FQNTQG 87 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~~~-~~--~~t~~~~~~~~~~~~~-~~~i~D~~g~~~----~~~~~~~~---~~~~~~ 87 (153)
+|+++|.+|+|||||++++.+.... .. ..|.......+..... .+.+|||||..+ .......+ ++.+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 5899999999999999999876532 11 2233344444555555 999999999632 22223333 456999
Q ss_pred EEEEEECCCc-ccHHHHHHHHHHHHcCC-CCCCceEEEEEeCCCccCCCC
Q 031796 88 LIFVVDSNDR-DRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAMN 135 (153)
Q Consensus 88 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~-~~~~~pii~v~~K~Dl~~~~~ 135 (153)
+++|+|+++. +++.....|...+.... .....|+++|+||+|+.....
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~ 131 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEE 131 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchh
Confidence 9999999998 78887776666554332 124689999999999976554
No 137
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.85 E-value=4e-20 Score=125.31 Aligned_cols=124 Identities=18% Similarity=0.227 Sum_probs=87.2
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCC-------cc-cccC------ceeeEE----EEE-----EEcCeEEEEEEcCCCCCc
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGE-------IV-TTIP------TIGFNV----ETV-----EYKNISFTVWDVGGQDKI 74 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~-------~~-~~~~------t~~~~~----~~~-----~~~~~~~~i~D~~g~~~~ 74 (153)
.+|+++|+.++|||||++++.+.. +. ...+ +.+... ... ....+.+.+|||||++++
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 479999999999999999998732 11 0111 111221 112 234678999999999999
Q ss_pred hhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCC---HhHHHHHhCCC
Q 031796 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLH 146 (153)
Q Consensus 75 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~---~~~~~~~~~~~ 146 (153)
...+..+++.+|++++|+|+++..++.....+... .. .++|+++|+||+|+.+... .+++++.+++.
T Consensus 81 ~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~-~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~ 150 (179)
T cd01890 81 SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLA-LE----NNLEIIPVINKIDLPSADPERVKQQIEDVLGLD 150 (179)
T ss_pred HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHH-HH----cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCC
Confidence 99999999999999999999887666555444332 22 3688999999999865432 34666666653
No 138
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.84 E-value=9.6e-20 Score=138.71 Aligned_cols=125 Identities=16% Similarity=0.179 Sum_probs=91.8
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCc--ccccCc--eeeEEEEEEEcCeEEEEEEcCCCCCchhc--------HHHhh
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIPT--IGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYF 82 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~--~~~~~t--~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~ 82 (153)
...++++++|++|+|||||+|++.+... ....|. .......+...+..+.+|||||..++... ...++
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~ 280 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAI 280 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHH
Confidence 5669999999999999999999998753 333443 33444566778889999999998765432 23567
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCCC
Q 031796 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 146 (153)
Q Consensus 83 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~~ 146 (153)
+++|++++|+|++++.++... |+..... .+.|+++|+||+|+... +.+++++.++.+
T Consensus 281 ~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-~~~~~~~~~~~~ 337 (442)
T TIGR00450 281 KQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-SLEFFVSSKVLN 337 (442)
T ss_pred hhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-chhhhhhhcCCc
Confidence 899999999999988777654 4444322 36899999999999755 344555555443
No 139
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.84 E-value=1.6e-19 Score=118.92 Aligned_cols=117 Identities=25% Similarity=0.363 Sum_probs=89.3
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCCcc-cccCceeeEEEE--EEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCEEEEE
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~~~-~~~~t~~~~~~~--~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 91 (153)
.+||+++|.+|+|||||++++.+..+. ...++....... +...+ +.+.+||+||+..+...+....++++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 379999999999999999999988854 234454444433 55556 7899999999999999988889999999999
Q ss_pred EECCCc-ccHHHHH-HHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 92 VDSNDR-DRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 92 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
+|.... .++.... .+...+.... ..+.|+++++||+|+....
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~ 124 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHA-ESNVPIILVGNKIDLRDAK 124 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhc-ccCCcEEEEEEcccCCcch
Confidence 998776 6665555 3443333322 2278999999999997643
No 140
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.84 E-value=1.2e-19 Score=124.81 Aligned_cols=112 Identities=23% Similarity=0.284 Sum_probs=82.7
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhc--CCccccc-------------C----ceeeEEEEEEEcCeEEEEEEcCCCCCchhc
Q 031796 17 EMRILMVGLDAAGKTTILYKLKL--GEIVTTI-------------P----TIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~--~~~~~~~-------------~----t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 77 (153)
..+|+++|.+++|||||++++.+ ..+.... + +.......+......+.+|||||+++|...
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 81 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGE 81 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHH
Confidence 36899999999999999999987 3333221 1 122223456667889999999999999999
Q ss_pred HHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 78 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
+..+++++|++++|+|+++.. +.....++..... .++|+++|+||+|+...
T Consensus 82 ~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~ 132 (194)
T cd01891 82 VERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDA 132 (194)
T ss_pred HHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCC
Confidence 999999999999999998632 2222333333322 36899999999999654
No 141
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.83 E-value=1.3e-19 Score=120.75 Aligned_cols=109 Identities=21% Similarity=0.116 Sum_probs=77.7
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCC---ccc---ccCceeeEEEEEEEc-CeEEEEEEcCCCCCchhcHHHhhcCCCEEEE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGE---IVT---TIPTIGFNVETVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~---~~~---~~~t~~~~~~~~~~~-~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 90 (153)
+.++++|++++|||||++++.+.. +.. ...|....+..+... ...+.+|||||++++.......++.+|++++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 368999999999999999998643 221 122444445555554 6799999999999887777777889999999
Q ss_pred EEECCC---cccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 91 VVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 91 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
|+|+++ .++...+. . +... ...|+++++||+|+...
T Consensus 81 V~d~~~~~~~~~~~~~~----~-~~~~--~~~~~ilv~NK~Dl~~~ 119 (164)
T cd04171 81 VVAADEGIMPQTREHLE----I-LELL--GIKRGLVVLTKADLVDE 119 (164)
T ss_pred EEECCCCccHhHHHHHH----H-HHHh--CCCcEEEEEECccccCH
Confidence 999976 22222221 1 1111 12489999999999764
No 142
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.83 E-value=2.9e-19 Score=119.88 Aligned_cols=116 Identities=17% Similarity=0.232 Sum_probs=80.2
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcccc---cCceeeEEEEEEEcCeEEEEEEcCCCCCch---------hcHHHhhcCC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYKNISFTVWDVGGQDKIR---------PLWRHYFQNT 85 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~~~~ 85 (153)
.+|+++|.+|+|||||++++.+..+... ..|.............++.+|||||+.... ..........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 3799999999999999999999876421 224455555566667899999999974211 1111112236
Q ss_pred CEEEEEEECCCcccH--HHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCC
Q 031796 86 QGLIFVVDSNDRDRV--VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (153)
Q Consensus 86 ~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~ 135 (153)
|++++|+|+++..++ .....++..+... ..+.|+++|+||+|+.....
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~ 130 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQLSLFEEIKPL--FKNKPVIVVLNKIDLLTFED 130 (168)
T ss_pred CcEEEEEeCCcccccchHHHHHHHHHHHhh--cCcCCeEEEEEccccCchhh
Confidence 899999999887654 4444555544322 14789999999999976543
No 143
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.82 E-value=2.4e-19 Score=124.10 Aligned_cols=119 Identities=20% Similarity=0.215 Sum_probs=82.3
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcc-c--ccCceeeEEEEEEEcC-eEEEEEEcCCCCCc---------hhcHHHh
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKN-ISFTVWDVGGQDKI---------RPLWRHY 81 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~-~--~~~t~~~~~~~~~~~~-~~~~i~D~~g~~~~---------~~~~~~~ 81 (153)
+..++|+++|++|||||||++++.+..+. . ..+|.......+...+ ..+.+|||||..+. ... ...
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~-~~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRST-LEE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHH-HHH
Confidence 44589999999999999999999987643 1 1234444444444444 38999999997432 111 123
Q ss_pred hcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCC
Q 031796 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (153)
Q Consensus 82 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~ 135 (153)
+.++|++++|+|++++.++.....+.. .+......+.|+++|+||+|+.....
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~-~l~~~~~~~~~viiV~NK~Dl~~~~~ 170 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVEK-VLKELGAEDIPMILVLNKIDLLDDEE 170 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHHH-HHHHcCcCCCCEEEEEEccccCChHH
Confidence 568999999999998877766544333 33333335689999999999976543
No 144
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.82 E-value=4.5e-21 Score=126.51 Aligned_cols=132 Identities=19% Similarity=0.360 Sum_probs=109.5
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcc-cccCceeeEEE----EEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~-~~~~t~~~~~~----~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
..-+|.+++|+.++||||++++++.+-|. .+..|++..+. .+...++...+||++|++++..+...+++.+.+-+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 45689999999999999999999988776 34557776653 24445678899999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+||+.+|..||++...|...+..+. ..+|.++|-||+|+.++. +.+.+++.+....+
T Consensus 98 LVFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~Rly 159 (246)
T KOG4252|consen 98 LVFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLY 159 (246)
T ss_pred EEEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhh
Confidence 9999999999999999999886654 589999999999998643 46666766665544
No 145
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.82 E-value=5.6e-19 Score=117.14 Aligned_cols=120 Identities=19% Similarity=0.267 Sum_probs=83.8
Q ss_pred EEcCCCCCHHHHHHhHhcCCcc-cccC--ceeeEEEEEEEcCeEEEEEEcCCCCCchh------cHHHhhc--CCCEEEE
Q 031796 22 MVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP------LWRHYFQ--NTQGLIF 90 (153)
Q Consensus 22 v~G~~~~GKSsli~~~~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~~--~~~~~i~ 90 (153)
++|.+|+|||||++++.+.... ...+ |.......+...+..+.+|||||+..+.. ....++. ++|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 5799999999999999987633 2223 44455556666778999999999887654 2455554 8999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC----CHhHHHHHhCCCcc
Q 031796 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSL 148 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~----~~~~~~~~~~~~~~ 148 (153)
|+|.++.+... .++..+.. .+.|+++|+||+|+.+.. ..+.+++.++.+.+
T Consensus 81 v~d~~~~~~~~---~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 135 (158)
T cd01879 81 VVDATNLERNL---YLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVV 135 (158)
T ss_pred EeeCCcchhHH---HHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeE
Confidence 99998765433 22222222 368999999999997643 24455566665544
No 146
>PRK15494 era GTPase Era; Provisional
Probab=99.81 E-value=8.2e-19 Score=129.91 Aligned_cols=114 Identities=16% Similarity=0.243 Sum_probs=81.1
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCccc--c--cCceeeEEEEEEEcCeEEEEEEcCCCCCc-hhcH-------HHhh
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT--T--IPTIGFNVETVEYKNISFTVWDVGGQDKI-RPLW-------RHYF 82 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~--~--~~t~~~~~~~~~~~~~~~~i~D~~g~~~~-~~~~-------~~~~ 82 (153)
.+..+|+++|.+|||||||+|++.+.++.. . .+|.......+...+.++.+|||||..+. .... ...+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 456799999999999999999999987642 1 23444445566677889999999998532 2221 1246
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 83 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
+.+|++++|+|.++ ++.....++...+.. .+.|.++|+||+|+.+.
T Consensus 130 ~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~ 175 (339)
T PRK15494 130 HSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK 175 (339)
T ss_pred hhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc
Confidence 78999999999754 455554455544433 24567889999999754
No 147
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.81 E-value=1.1e-19 Score=119.00 Aligned_cols=109 Identities=21% Similarity=0.259 Sum_probs=74.5
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCCC-----CchhcHHHhhcCCCEEEEEEE
Q 031796 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQD-----KIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~~~~~~~~~~~i~v~d 93 (153)
||+++|++|+|||||++++.+..+. ..+|...++ .. .+|||||+. .+..... .++++|++++|||
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~~~~-----~~---~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d 71 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQAVEY-----ND---GAIDTPGEYVENRRLYSALIV-TAADADVIALVQS 71 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-cccceeEEE-----cC---eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEec
Confidence 8999999999999999999887652 233333322 22 689999973 2333333 4789999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-C---HhHHHHHhCC
Q 031796 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-N---AAEITDKLGL 145 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-~---~~~~~~~~~~ 145 (153)
++++.++... .|.... ..|+++|+||+|+.... . .+++++..+.
T Consensus 72 ~~~~~s~~~~--~~~~~~------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~ 119 (142)
T TIGR02528 72 ATDPESRFPP--GFASIF------VKPVIGLVTKIDLAEADVDIERAKELLETAGA 119 (142)
T ss_pred CCCCCcCCCh--hHHHhc------cCCeEEEEEeeccCCcccCHHHHHHHHHHcCC
Confidence 9999887542 232221 23899999999996532 2 2344555554
No 148
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.81 E-value=3.8e-19 Score=116.00 Aligned_cols=113 Identities=29% Similarity=0.524 Sum_probs=88.9
Q ss_pred EEcCCCCCHHHHHHhHhcCCc-ccc-cCceeeEEEEEEEc----CeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECC
Q 031796 22 MVGLDAAGKTTILYKLKLGEI-VTT-IPTIGFNVETVEYK----NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (153)
Q Consensus 22 v~G~~~~GKSsli~~~~~~~~-~~~-~~t~~~~~~~~~~~----~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 95 (153)
++|++|+|||||++++.+... ... .++. .+....... ...+.+||+||+..+.......++.+|++++|+|.+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 579999999999999998776 322 3333 555444443 678999999999988888888899999999999999
Q ss_pred CcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCC
Q 031796 96 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (153)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~ 135 (153)
++.++.....++............|+++++||+|+.....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~ 119 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERV 119 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccc
Confidence 9988888877744444444457899999999999986654
No 149
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.81 E-value=6.9e-19 Score=117.88 Aligned_cols=110 Identities=22% Similarity=0.193 Sum_probs=80.2
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCCcccc---cCceeeEEEEEEEc---CeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEE
Q 031796 19 RILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYK---NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~~~~~---~~t~~~~~~~~~~~---~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (153)
.++++|.+|+|||||++++....+... ..|.......+... ...+.+|||||++.+...+...++.+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 489999999999999999998876543 22333333444443 678999999999999888888899999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
|+++....... ..+.. +.. .+.|+++|+||+|+...
T Consensus 82 d~~~~~~~~~~-~~~~~-~~~---~~~p~ivv~NK~Dl~~~ 117 (168)
T cd01887 82 AADDGVMPQTI-EAIKL-AKA---ANVPFIVALNKIDKPNA 117 (168)
T ss_pred ECCCCccHHHH-HHHHH-HHH---cCCCEEEEEEceecccc
Confidence 99874321111 11111 122 36899999999998754
No 150
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.81 E-value=7.7e-19 Score=115.96 Aligned_cols=124 Identities=22% Similarity=0.337 Sum_probs=86.9
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcc-cccC--ceeeEEEEEEEcCeEEEEEEcCCCCCc------hhcHHHhh--cCCC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKI------RPLWRHYF--QNTQ 86 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~------~~~~~~~~--~~~~ 86 (153)
++|+++|.++||||||+|++++.+.. .+.| |.......+...+..+.++|+||.... +.....++ .+.|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 58999999999999999999999854 3344 666667778888999999999995333 22223333 5899
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC----CHhHHHHHhCCCcc
Q 031796 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSL 148 (153)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~----~~~~~~~~~~~~~~ 148 (153)
++++|+|+++.+.-..+ ..++++ ..+|+++++||+|+.... ..+.+.+.+|.+-+
T Consensus 81 ~ii~VvDa~~l~r~l~l---~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi 139 (156)
T PF02421_consen 81 LIIVVVDATNLERNLYL---TLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVI 139 (156)
T ss_dssp EEEEEEEGGGHHHHHHH---HHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EE
T ss_pred EEEEECCCCCHHHHHHH---HHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEE
Confidence 99999999875433333 333333 369999999999987543 57889999987644
No 151
>PRK04213 GTP-binding protein; Provisional
Probab=99.81 E-value=6e-20 Score=126.82 Aligned_cols=126 Identities=24% Similarity=0.351 Sum_probs=83.3
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEEEEEEcCeEEEEEEcCC-----------CCCchhcHHHhh
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGG-----------QDKIRPLWRHYF 82 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~~~ 82 (153)
...++|+++|.+|+|||||++++.+..+.. ..|+.......+... .+.+||||| ++.++..+..++
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYI 84 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHHH
Confidence 456899999999999999999999877542 344444443344333 689999999 455555555555
Q ss_pred c----CCCEEEEEEECCCcccHH---------HHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC--CHhHHHHHhCC
Q 031796 83 Q----NTQGLIFVVDSNDRDRVV---------EARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGL 145 (153)
Q Consensus 83 ~----~~~~~i~v~d~~~~~s~~---------~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~--~~~~~~~~~~~ 145 (153)
+ .++++++|+|.++...+. .....+...+.. .++|+++|+||+|+.... ..+++++.+++
T Consensus 85 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~ 159 (201)
T PRK04213 85 EDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNRDEVLDEIAERLGL 159 (201)
T ss_pred HhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcHHHHHHHHHHHhcC
Confidence 4 357888888876532220 011112222222 368999999999997544 45667777775
No 152
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.80 E-value=1.6e-18 Score=133.52 Aligned_cols=114 Identities=21% Similarity=0.286 Sum_probs=83.3
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcc--cccC--ceeeEEEEEEEcCeEEEEEEcCCCCC--------chhcHHHhh
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDK--------IRPLWRHYF 82 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~ 82 (153)
....+|+++|.+|||||||++++.+.... ...+ |...........+..+.+|||||.+. +......++
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 34579999999999999999999987643 2233 33344455666778899999999763 333455678
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 83 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
+++|++++|+|+++..++.. ..+...+.. .+.|+++|+||+|+...
T Consensus 116 ~~aD~il~VvD~~~~~s~~~--~~i~~~l~~---~~~piilV~NK~Dl~~~ 161 (472)
T PRK03003 116 RTADAVLFVVDATVGATATD--EAVARVLRR---SGKPVILAANKVDDERG 161 (472)
T ss_pred HhCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCcc
Confidence 89999999999998765532 223333333 47899999999998654
No 153
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.80 E-value=1.8e-18 Score=114.73 Aligned_cols=129 Identities=25% Similarity=0.384 Sum_probs=103.4
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCccc----------cc---CceeeEEEEEEEcC-eEEEEEEcCCCCCchhcHH
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT----------TI---PTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLWR 79 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~----------~~---~t~~~~~~~~~~~~-~~~~i~D~~g~~~~~~~~~ 79 (153)
.....||++.|+.++||||+++++....... .. .|+..++......+ ..+.+++||||++|+.+|.
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~ 86 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWE 86 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHH
Confidence 4567899999999999999999998765311 11 35667777777666 8999999999999999999
Q ss_pred HhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCCC
Q 031796 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 146 (153)
Q Consensus 80 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~~ 146 (153)
...+.+.+.++++|.+.+..+ ....+..++.+.. .+|+++++||.|++++..++++.+-+.+.
T Consensus 87 ~l~~ga~gaivlVDss~~~~~--~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a~ppe~i~e~l~~~ 149 (187)
T COG2229 87 ILSRGAVGAIVLVDSSRPITF--HAEEIIDFLTSRN--PIPVVVAINKQDLFDALPPEKIREALKLE 149 (187)
T ss_pred HHhCCcceEEEEEecCCCcch--HHHHHHHHHhhcc--CCCEEEEeeccccCCCCCHHHHHHHHHhc
Confidence 999999999999999999888 2233344444421 29999999999999999888888776655
No 154
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.80 E-value=3.2e-18 Score=113.14 Aligned_cols=111 Identities=19% Similarity=0.242 Sum_probs=81.5
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcc--cccCc--eeeEEEEEEEcCeEEEEEEcCCCCCchhc--------HHHhhcCC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPT--IGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYFQNT 85 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~--~~~~t--~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~~ 85 (153)
++++++|++|+|||||++++.+.... ...+. .......+...+.++.+|||||...+... ....+.++
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 58999999999999999999987643 22222 22333445566789999999997665322 23466789
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCC
Q 031796 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (153)
Q Consensus 86 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~ 135 (153)
|++++|+|++++.+......+.. ....|+++|+||+|+.....
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~ 124 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSE 124 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCccc
Confidence 99999999998777665543332 24789999999999976543
No 155
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.80 E-value=3e-18 Score=116.69 Aligned_cols=111 Identities=23% Similarity=0.194 Sum_probs=83.0
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCCccccc-------------------CceeeEEEEEEEcCeEEEEEEcCCCCCchhcHH
Q 031796 19 RILMVGLDAAGKTTILYKLKLGEIVTTI-------------------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 79 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~~~~~~-------------------~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 79 (153)
+|+++|.+|+|||||++++.+....... .+..............+.+|||||...+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 4899999999999999999887654321 222333344555678999999999999988888
Q ss_pred HhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 80 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
.+++.+|++++|+|+++..+.... ..+... .. .+.|+++|+||+|+..+.
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~-~~---~~~~i~iv~nK~D~~~~~ 130 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTR-EHLRIA-RE---GGLPIIVAINKIDRVGEE 130 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHH-HHHHHH-HH---CCCCeEEEEECCCCcchh
Confidence 899999999999999876543322 222222 22 478999999999998643
No 156
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=1.3e-19 Score=118.02 Aligned_cols=135 Identities=33% Similarity=0.627 Sum_probs=121.9
Q ss_pred cccCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEE
Q 031796 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (153)
..++.-|++++|-.++|||||++.+.+.+.....||.-.+.......++++..+|..|+...+..|..++..+|++++.+
T Consensus 16 L~kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lv 95 (193)
T KOG0077|consen 16 LYKKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLV 95 (193)
T ss_pred HhccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeee
Confidence 34677899999999999999999999998888888888888888899999999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCCCc
Q 031796 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS 147 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~~~ 147 (153)
|+.+.+.|.+....+...+........|+++.+||+|.+.+.+.+++...+|+..
T Consensus 96 da~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~ 150 (193)
T KOG0077|consen 96 DAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSN 150 (193)
T ss_pred ehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHH
Confidence 9999999999999888887776678999999999999999888788877776644
No 157
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.80 E-value=1.4e-18 Score=129.03 Aligned_cols=117 Identities=22% Similarity=0.270 Sum_probs=84.9
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCcc-cc--cCceeeEEEEEEE-cCeEEEEEEcCCCCC---------chhcHHHhh
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEY-KNISFTVWDVGGQDK---------IRPLWRHYF 82 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~-~~--~~t~~~~~~~~~~-~~~~~~i~D~~g~~~---------~~~~~~~~~ 82 (153)
..++|+++|.+|+|||||+|++.+.... .. .+|.......+.. .+..+.+|||+|..+ |...+ ..+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EEV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HHH
Confidence 3489999999999999999999998643 22 3455666666666 467999999999722 22222 247
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 83 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
.++|++++|+|++++.++.....+ ...+......+.|+++|+||+|+....
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~-~~~L~~l~~~~~piIlV~NK~Dl~~~~ 317 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAV-EKVLEELGAEDIPQLLVYNKIDLLDEP 317 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHH-HHHHHHhccCCCCEEEEEEeecCCChH
Confidence 889999999999998877665433 233333333478999999999997543
No 158
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.80 E-value=9.4e-19 Score=117.99 Aligned_cols=115 Identities=24% Similarity=0.271 Sum_probs=81.5
Q ss_pred EEcCCCCCHHHHHHhHhcCCcc-cc--cCceeeEEEEEEEc-CeEEEEEEcCCCCC----chhc---HHHhhcCCCEEEE
Q 031796 22 MVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYK-NISFTVWDVGGQDK----IRPL---WRHYFQNTQGLIF 90 (153)
Q Consensus 22 v~G~~~~GKSsli~~~~~~~~~-~~--~~t~~~~~~~~~~~-~~~~~i~D~~g~~~----~~~~---~~~~~~~~~~~i~ 90 (153)
++|++|||||||++++.+.... .. ..|.......+... +..+.+|||||... .+.. ....++.+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 5899999999999999988642 21 22344444555666 78999999999632 1222 2345678999999
Q ss_pred EEECCCc------ccHHHHHHHHHHHHcCCC------CCCceEEEEEeCCCccCCCCH
Q 031796 91 VVDSNDR------DRVVEARDELHRMLNEDE------LRDAVLLVFANKQDLPNAMNA 136 (153)
Q Consensus 91 v~d~~~~------~s~~~~~~~~~~~~~~~~------~~~~pii~v~~K~Dl~~~~~~ 136 (153)
|+|+++. .++.+...+...+..... ..+.|+++|+||+|+......
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~ 138 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEEL 138 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHH
Confidence 9999987 467666666666543322 147899999999999765443
No 159
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.79 E-value=3.2e-18 Score=126.27 Aligned_cols=117 Identities=23% Similarity=0.273 Sum_probs=86.7
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcc-cc--cCceeeEEEEEEE-cCeEEEEEEcCCCCC-------chhcHHHhhcCCC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEY-KNISFTVWDVGGQDK-------IRPLWRHYFQNTQ 86 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~-~~--~~t~~~~~~~~~~-~~~~~~i~D~~g~~~-------~~~~~~~~~~~~~ 86 (153)
-.|.++|.+++|||||++++.+.+.. .. ..|.......+.. ...++.+||+||..+ ....+...+++++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~ 238 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 238 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence 45899999999999999999986532 22 3456666666766 456899999999643 2223344567899
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCC-CCCCceEEEEEeCCCccCCC
Q 031796 87 GLIFVVDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~pii~v~~K~Dl~~~~ 134 (153)
++++|+|+++.++++....|...+.... ...+.|+++|+||+|+..+.
T Consensus 239 vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~ 287 (335)
T PRK12299 239 LLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEE 287 (335)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCch
Confidence 9999999998878888877766654321 23478999999999997654
No 160
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.79 E-value=3.7e-19 Score=119.87 Aligned_cols=122 Identities=27% Similarity=0.443 Sum_probs=79.4
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEE---cCeEEEEEEcCCCCCchhcHHHh---hcCCCEEE
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY---KNISFTVWDVGGQDKIRPLWRHY---FQNTQGLI 89 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~i~D~~g~~~~~~~~~~~---~~~~~~~i 89 (153)
+.-.++++|+.|+|||+|+.++..+....+..+...+. .... ....+.+.|+||+.+.+...... .+++.+++
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---SSEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 34679999999999999999999987665544442222 2222 34579999999999988765554 78899999
Q ss_pred EEEECCC-cccHHHHHHHHHHHHcCC--CCCCceEEEEEeCCCccCCCCHhH
Q 031796 90 FVVDSND-RDRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAMNAAE 138 (153)
Q Consensus 90 ~v~d~~~-~~s~~~~~~~~~~~~~~~--~~~~~pii~v~~K~Dl~~~~~~~~ 138 (153)
||+|.+. ...+.+...++..++... ....+|+++++||.|+..+.....
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~ 132 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKK 132 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHH
T ss_pred EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHH
Confidence 9999874 445667777777766432 246799999999999987754433
No 161
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.79 E-value=4.1e-18 Score=125.52 Aligned_cols=123 Identities=22% Similarity=0.244 Sum_probs=85.8
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcc-cc--cCceeeEEEEEEEcC-eEEEEEEcCCCCCc-------hhcHHHhhcCCC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKN-ISFTVWDVGGQDKI-------RPLWRHYFQNTQ 86 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~-~~--~~t~~~~~~~~~~~~-~~~~i~D~~g~~~~-------~~~~~~~~~~~~ 86 (153)
-.|+++|.+++|||||++++.+.+.. .. ..|.......+...+ ..+.+||+||..+. ...+...+++++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad 237 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 237 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence 46899999999999999999987532 22 235555566666666 89999999997432 222334456799
Q ss_pred EEEEEEECCCc---ccHHHHHHHHHHHHcC-CCCCCceEEEEEeCCCccCCCCHhHHH
Q 031796 87 GLIFVVDSNDR---DRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAMNAAEIT 140 (153)
Q Consensus 87 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~-~~~~~~pii~v~~K~Dl~~~~~~~~~~ 140 (153)
++++|+|+++. +++.....+..++... ....+.|+++|+||+|+..+...+++.
T Consensus 238 ~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~ 295 (329)
T TIGR02729 238 VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELL 295 (329)
T ss_pred EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHH
Confidence 99999999876 5666666555544322 123478999999999997654433333
No 162
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.78 E-value=4.8e-18 Score=122.40 Aligned_cols=109 Identities=18% Similarity=0.137 Sum_probs=76.3
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCCcc--cccC-ce-eeEEEEEEEcCeEEEEEEcCCCCCchh--------cHHHhhcCCC
Q 031796 19 RILMVGLDAAGKTTILYKLKLGEIV--TTIP-TI-GFNVETVEYKNISFTVWDVGGQDKIRP--------LWRHYFQNTQ 86 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~~~--~~~~-t~-~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~~ 86 (153)
+|+++|.+|+|||||+|++.+.+.. +..+ |+ ..........+.++.+|||||...... .....++++|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 6899999999999999999998754 2222 22 222233334557899999999754311 1235578999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
++++|+|+++..+.. .++...+.. .+.|+++|+||+|+...
T Consensus 82 vvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~ 122 (270)
T TIGR00436 82 LILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFK 122 (270)
T ss_pred EEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCH
Confidence 999999998876654 233333333 36899999999999743
No 163
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.78 E-value=4.4e-18 Score=112.54 Aligned_cols=120 Identities=21% Similarity=0.265 Sum_probs=82.0
Q ss_pred EEEcCCCCCHHHHHHhHhcCCcc--cccC--ceeeEEEEEEEcCeEEEEEEcCCCCCchh--------cHHHhhcCCCEE
Q 031796 21 LMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP--------LWRHYFQNTQGL 88 (153)
Q Consensus 21 ~v~G~~~~GKSsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~~~~ 88 (153)
+++|.+|+|||||++++.+.+.. ...+ |...........+..+.+|||||...+.. .....++++|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 47899999999999999987532 2222 33344455666778999999999987644 334567889999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCC
Q 031796 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL 145 (153)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~ 145 (153)
++|+|..+..+.... ++...+.. .+.|+++|+||+|+.......+....++.
T Consensus 81 i~v~d~~~~~~~~~~--~~~~~~~~---~~~piiiv~nK~D~~~~~~~~~~~~~~~~ 132 (157)
T cd01894 81 LFVVDGREGLTPADE--EIAKYLRK---SKKPVILVVNKVDNIKEEDEAAEFYSLGF 132 (157)
T ss_pred EEEEeccccCCccHH--HHHHHHHh---cCCCEEEEEECcccCChHHHHHHHHhcCC
Confidence 999998765433322 23333333 35899999999999876543333334443
No 164
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.78 E-value=4.5e-18 Score=130.10 Aligned_cols=112 Identities=21% Similarity=0.310 Sum_probs=84.5
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCc--ccccC--ceeeEEEEEEEcCeEEEEEEcCCCCCchhc--------HHHhh
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYF 82 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~ 82 (153)
...++++++|.+|+|||||+|++.+... ....+ |.......+...+.++.+|||||..++... ....+
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 4568999999999999999999998764 33333 444445566777889999999998765432 23467
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 83 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
+++|++++|+|++++.++.....+ .. ..+.|+++|+||+|+...
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l-~~------~~~~piiiV~NK~DL~~~ 336 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEIL-EE------LKDKPVIVVLNKADLTGE 336 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHH-Hh------cCCCCcEEEEEhhhcccc
Confidence 889999999999988777644332 22 246899999999999754
No 165
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.77 E-value=2.3e-17 Score=118.50 Aligned_cols=126 Identities=21% Similarity=0.254 Sum_probs=90.1
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCC--ccc-----------------------ccCceeeEEEEEEEcCeEEEEEEcCCC
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGE--IVT-----------------------TIPTIGFNVETVEYKNISFTVWDVGGQ 71 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~--~~~-----------------------~~~t~~~~~~~~~~~~~~~~i~D~~g~ 71 (153)
..+|+++|..|+|||||+++++... ... ...+.......+++.+.++.+|||||+
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~ 81 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH 81 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence 3689999999999999999997421 000 011233444567788899999999999
Q ss_pred CCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCC---HhHHHHHhCCCc
Q 031796 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHS 147 (153)
Q Consensus 72 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~---~~~~~~~~~~~~ 147 (153)
.+|.......++.+|++++|+|+++.... ....++... .. .++|+++++||+|+..... .+++.+.++..-
T Consensus 82 ~df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~-~~---~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~~~~ 155 (267)
T cd04169 82 EDFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVC-RL---RGIPIITFINKLDREGRDPLELLDEIEEELGIDC 155 (267)
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHH-Hh---cCCCEEEEEECCccCCCCHHHHHHHHHHHHCCCc
Confidence 98887777788999999999999865322 222333322 22 3689999999999876653 456777777644
No 166
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.77 E-value=1.5e-17 Score=110.58 Aligned_cols=112 Identities=21% Similarity=0.220 Sum_probs=76.4
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCccccc---Cc-eeeEEEEEEEcCeEEEEEEcCCCCCchh--------cHHHhhc
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI---PT-IGFNVETVEYKNISFTVWDVGGQDKIRP--------LWRHYFQ 83 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~---~t-~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~ 83 (153)
...+|+++|++|+|||||++++.+.+..... .+ ..............+.+|||||...... .....+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999987654221 12 1222233344567899999999765432 2234578
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 84 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
.+|++++|+|++++ +.....++...+.. .+.|+++|+||+|+..
T Consensus 82 ~~d~i~~v~d~~~~--~~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~ 125 (168)
T cd04163 82 DVDLVLFVVDASEP--IGEGDEFILELLKK---SKTPVILVLNKIDLVK 125 (168)
T ss_pred hCCEEEEEEECCCc--cCchHHHHHHHHHH---hCCCEEEEEEchhccc
Confidence 89999999999876 22222233333332 2589999999999983
No 167
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.76 E-value=1.7e-17 Score=113.97 Aligned_cols=111 Identities=19% Similarity=0.109 Sum_probs=74.4
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCC----cc----c--ccCceeeEEEEEEEc--------------CeEEEEEEcCCCCC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGE----IV----T--TIPTIGFNVETVEYK--------------NISFTVWDVGGQDK 73 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~----~~----~--~~~t~~~~~~~~~~~--------------~~~~~i~D~~g~~~ 73 (153)
+||+++|+.++|||||++++.+.. +. + ...|.......+... ...+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 589999999999999999998631 11 1 123444444444333 67899999999976
Q ss_pred chhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 74 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
+........+.+|++++|+|+++.........+.. ... .+.|+++++||+|+...
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~--~~~---~~~~~iiv~NK~Dl~~~ 135 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVI--GEI---LCKKLIVVLNKIDLIPE 135 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHH--HHH---cCCCEEEEEECcccCCH
Confidence 54444444567899999999987543333222211 111 24699999999998743
No 168
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.76 E-value=1.6e-17 Score=128.01 Aligned_cols=113 Identities=19% Similarity=0.225 Sum_probs=81.9
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCcc--cccCce--eeEEEEEEEcCeEEEEEEcCCCC----------CchhcH-HH
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTI--GFNVETVEYKNISFTVWDVGGQD----------KIRPLW-RH 80 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~--~~~~t~--~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~-~~ 80 (153)
..++|+++|.+++|||||++++++..+. ...+.+ ......+...+..+.+|||||.. .+.... ..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 4589999999999999999999988642 333332 23334556677888999999953 222222 24
Q ss_pred hhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 81 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
+++++|++++|+|+++..++.... ++..... .+.|+++|+||+|+...
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~ 337 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDE 337 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCCh
Confidence 578999999999999887776653 3333322 46899999999999754
No 169
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.76 E-value=1.7e-17 Score=126.78 Aligned_cols=110 Identities=23% Similarity=0.343 Sum_probs=80.4
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcc--cccC--ceeeEEEEEEEcCeEEEEEEcCCCCC--------chhcHHHhhcCC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDK--------IRPLWRHYFQNT 85 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~~~ 85 (153)
.+|+++|.+|||||||++++.+.+.. ...+ |...........+..+.+|||||.+. +......+++++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 58999999999999999999987642 2222 44455566777789999999999886 233345667899
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 86 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
|++++|+|+++..+... .++...+.. .+.|+++|+||+|+.+
T Consensus 82 d~il~vvd~~~~~~~~~--~~~~~~l~~---~~~piilv~NK~D~~~ 123 (435)
T PRK00093 82 DVILFVVDGRAGLTPAD--EEIAKILRK---SNKPVILVVNKVDGPD 123 (435)
T ss_pred CEEEEEEECCCCCCHHH--HHHHHHHHH---cCCcEEEEEECccCcc
Confidence 99999999987533321 222233332 2689999999999765
No 170
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.76 E-value=6.9e-17 Score=108.27 Aligned_cols=112 Identities=21% Similarity=0.258 Sum_probs=77.2
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCCcc--cccC--ceeeEEEEEEEcCeEEEEEEcCCCCCchh-----------cHHHh
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP-----------LWRHY 81 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~~~~~ 81 (153)
.++|+++|.+|+|||||++++.+.... ...+ +.......+...+..+.+||+||..+... .....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 579999999999999999999887532 2222 22222234555667899999999754311 11234
Q ss_pred hcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 82 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
++.+|++++|+|++++.+..... .+... .. .+.|+++++||+|+...
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~~-~~~~~-~~---~~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDLR-IAGLI-LE---EGKALVIVVNKWDLVEK 128 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHHH-HHHHH-Hh---cCCCEEEEEeccccCCc
Confidence 67899999999998876654432 22222 21 35899999999999765
No 171
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.75 E-value=1.9e-17 Score=126.33 Aligned_cols=122 Identities=23% Similarity=0.306 Sum_probs=84.7
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCCcc--cccC--ceeeEEEEEEEcCeEEEEEEcCCCC--------CchhcHHHhhcCCC
Q 031796 19 RILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQD--------KIRPLWRHYFQNTQ 86 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~~~~ 86 (153)
+|+++|.+|||||||+|++.+.+.. ...+ |.........+.+..+.+|||||.. .+.......++++|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 5899999999999999999987642 2223 4445566777788899999999963 23444566788999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCC
Q 031796 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL 145 (153)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~ 145 (153)
++++|+|+.+..+.. ...+...+++ .+.|+++|+||+|+........-...+|+
T Consensus 81 ~vl~vvD~~~~~~~~--d~~i~~~l~~---~~~piilVvNK~D~~~~~~~~~~~~~lg~ 134 (429)
T TIGR03594 81 VILFVVDGREGLTPE--DEEIAKWLRK---SGKPVILVANKIDGKKEDAVAAEFYSLGF 134 (429)
T ss_pred EEEEEEeCCCCCCHH--HHHHHHHHHH---hCCCEEEEEECccCCcccccHHHHHhcCC
Confidence 999999997643332 2223333333 36899999999998765432222334454
No 172
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.75 E-value=2.2e-17 Score=112.22 Aligned_cols=114 Identities=21% Similarity=0.307 Sum_probs=74.0
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCcc-cccCceee--EEEEEEEcCeEEEEEEcCCCCC----------chhcHHH
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGF--NVETVEYKNISFTVWDVGGQDK----------IRPLWRH 80 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~-~~~~t~~~--~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~ 80 (153)
..+..+++++|.+|+|||||++++.+..+. ...++.+. ....+... -.+.+|||||... +......
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 93 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEE 93 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHHHHHH
Confidence 367799999999999999999999987632 22222221 11122222 3799999999532 2233334
Q ss_pred hhc---CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 81 YFQ---NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 81 ~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
+++ .++++++|+|.++.-+.... .+...+.. .+.|+++++||+|+..+
T Consensus 94 ~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~---~~~pviiv~nK~D~~~~ 144 (179)
T TIGR03598 94 YLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE---RGIPVLIVLTKADKLKK 144 (179)
T ss_pred HHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECcccCCH
Confidence 444 36899999999765444333 22233332 36899999999999754
No 173
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.74 E-value=6.6e-17 Score=114.34 Aligned_cols=122 Identities=21% Similarity=0.190 Sum_probs=87.9
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCCcc--------------cc-------cCceeeEEEEEEEcCeEEEEEEcCCCCCchhc
Q 031796 19 RILMVGLDAAGKTTILYKLKLGEIV--------------TT-------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~~~--------------~~-------~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 77 (153)
++.++|..|+|||||+++++...-. .. ..+.......+.+.+.++.+|||||+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999999753100 00 11333445667788899999999999999888
Q ss_pred HHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC---CHhHHHHHhCC
Q 031796 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGL 145 (153)
Q Consensus 78 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~---~~~~~~~~~~~ 145 (153)
+...++.+|++++|+|+++.... ....++... .. .++|+++++||+|+.... ..+++.+.++.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~-~~---~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~ 146 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLL-RK---LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSS 146 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHH-HH---cCCCEEEEEECccccCCCHHHHHHHHHHHHCC
Confidence 88899999999999999875433 223333333 22 368999999999998643 24445555544
No 174
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.74 E-value=1.4e-17 Score=124.34 Aligned_cols=113 Identities=23% Similarity=0.307 Sum_probs=87.6
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcc--ccc--CceeeEEEEEEEcCeEEEEEEcCCCCCc---------hhcHHHhhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTI--PTIGFNVETVEYKNISFTVWDVGGQDKI---------RPLWRHYFQN 84 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~--~~~--~t~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~~~ 84 (153)
..|+++|.++||||||+||+.+++.. ... .|.+..+....+.+..+.++||+|-+.. .......+.+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 57999999999999999999998854 333 4788888999999999999999996632 2334556788
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCC
Q 031796 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (153)
Q Consensus 85 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~ 135 (153)
||++|||+|... ........+...+.. .+.|+++|.||+|....+.
T Consensus 84 ADvilfvVD~~~--Git~~D~~ia~~Lr~---~~kpviLvvNK~D~~~~e~ 129 (444)
T COG1160 84 ADVILFVVDGRE--GITPADEEIAKILRR---SKKPVILVVNKIDNLKAEE 129 (444)
T ss_pred CCEEEEEEeCCC--CCCHHHHHHHHHHHh---cCCCEEEEEEcccCchhhh
Confidence 999999999843 344444455555553 4689999999999874443
No 175
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.74 E-value=7.9e-17 Score=121.81 Aligned_cols=126 Identities=26% Similarity=0.316 Sum_probs=85.7
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCCcc-cc--cCceeeEEEEEEEc-CeEEEEEEcCCCCC----chhc---HHHhhcCCCE
Q 031796 19 RILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYK-NISFTVWDVGGQDK----IRPL---WRHYFQNTQG 87 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~~~-~~--~~t~~~~~~~~~~~-~~~~~i~D~~g~~~----~~~~---~~~~~~~~~~ 87 (153)
.|.++|.++||||||++++.+.+.. .. ..|...+...+... ...+.+||+||..+ ...+ +...++++++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~l 239 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRV 239 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCE
Confidence 7999999999999999999987632 22 33555666666665 67899999999643 2222 2334567999
Q ss_pred EEEEEECCCc---ccHHHHHHHHHHHHcC-CCCCCceEEEEEeCCCccCCC-CHhHHHHHhC
Q 031796 88 LIFVVDSNDR---DRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAM-NAAEITDKLG 144 (153)
Q Consensus 88 ~i~v~d~~~~---~s~~~~~~~~~~~~~~-~~~~~~pii~v~~K~Dl~~~~-~~~~~~~~~~ 144 (153)
+++|+|+++. +++.....+...+... ....+.|+++|+||+|+.... ..+++++.++
T Consensus 240 lI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~ 301 (424)
T PRK12297 240 IVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLG 301 (424)
T ss_pred EEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhC
Confidence 9999999865 4555555444443221 123478999999999985432 2344555554
No 176
>PRK11058 GTPase HflX; Provisional
Probab=99.74 E-value=4.8e-17 Score=123.43 Aligned_cols=115 Identities=18% Similarity=0.245 Sum_probs=80.2
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcc-cc--cCceeeEEEEEEEcCe-EEEEEEcCCCCCc--hhcH------HHhhcCC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKNI-SFTVWDVGGQDKI--RPLW------RHYFQNT 85 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~-~~--~~t~~~~~~~~~~~~~-~~~i~D~~g~~~~--~~~~------~~~~~~~ 85 (153)
.+++++|.+|+|||||+|++.+.+.. .. ..|.......+...+. .+.+|||+|..+. ...+ ...++++
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 58999999999999999999987643 22 2344444455555553 8899999997432 2222 2335789
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 86 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
|++++|+|++++.++.....+ ..++......+.|+++|+||+|+...
T Consensus 278 DlIL~VvDaS~~~~~e~l~~v-~~iL~el~~~~~pvIiV~NKiDL~~~ 324 (426)
T PRK11058 278 TLLLHVVDAADVRVQENIEAV-NTVLEEIDAHEIPTLLVMNKIDMLDD 324 (426)
T ss_pred CEEEEEEeCCCccHHHHHHHH-HHHHHHhccCCCCEEEEEEcccCCCc
Confidence 999999999998776665322 22222222247899999999998643
No 177
>PRK00089 era GTPase Era; Reviewed
Probab=99.74 E-value=6.6e-17 Score=117.69 Aligned_cols=112 Identities=21% Similarity=0.275 Sum_probs=76.5
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCccc--ccC-ceeeEE-EEEEEcCeEEEEEEcCCCCCchh--------cHHHhhc
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT--TIP-TIGFNV-ETVEYKNISFTVWDVGGQDKIRP--------LWRHYFQ 83 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~~--~~~-t~~~~~-~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~ 83 (153)
+.-.|+++|++|+|||||+|++++.+... ..+ |+.... ......+.++.++||||...... .....+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 45679999999999999999999987542 222 222222 22333457999999999755422 2234567
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 84 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
++|++++|+|+++. +.....++...+.. .+.|+++|+||+|+..
T Consensus 84 ~~D~il~vvd~~~~--~~~~~~~i~~~l~~---~~~pvilVlNKiDl~~ 127 (292)
T PRK00089 84 DVDLVLFVVDADEK--IGPGDEFILEKLKK---VKTPVILVLNKIDLVK 127 (292)
T ss_pred cCCEEEEEEeCCCC--CChhHHHHHHHHhh---cCCCEEEEEECCcCCC
Confidence 89999999999872 22333344444332 3689999999999973
No 178
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.74 E-value=8.1e-17 Score=126.68 Aligned_cols=126 Identities=18% Similarity=0.228 Sum_probs=89.3
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCC-------cccc-c----------CceeeEEEEEEE-----cCeEEEEEEcCCCC
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGE-------IVTT-I----------PTIGFNVETVEY-----KNISFTVWDVGGQD 72 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~-------~~~~-~----------~t~~~~~~~~~~-----~~~~~~i~D~~g~~ 72 (153)
+..|++++|+.++|||||+++++... +... . .|.......+.+ ..+.+++|||||+.
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~ 81 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 81 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence 34789999999999999999998642 1111 1 122222223332 23789999999999
Q ss_pred CchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCC---HhHHHHHhCCC
Q 031796 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLH 146 (153)
Q Consensus 73 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~---~~~~~~~~~~~ 146 (153)
+|...+..+++.+|++++|+|+++..+......|+... . .++|+++|+||+|+.+... .+++++.+++.
T Consensus 82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~ 153 (595)
T TIGR01393 82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSADPERVKKEIEEVIGLD 153 (595)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCC
Confidence 99999999999999999999999876666555544432 2 3679999999999975432 24555656543
No 179
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.73 E-value=7e-17 Score=123.76 Aligned_cols=117 Identities=26% Similarity=0.291 Sum_probs=81.8
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcc-cc--cCceeeEEEEEEEcCeEEEEEEcCCCCCc----h---hcHHHhhcCCCE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKNISFTVWDVGGQDKI----R---PLWRHYFQNTQG 87 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~-~~--~~t~~~~~~~~~~~~~~~~i~D~~g~~~~----~---~~~~~~~~~~~~ 87 (153)
-+|+++|.+++|||||++++.+.+.. .. ..|.......+...+.++.+||+||..+. . ......++++|+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradv 239 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAV 239 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCE
Confidence 57999999999999999999987543 22 34666777778888889999999996421 1 122345678999
Q ss_pred EEEEEECCCc----ccHHH---HHHHHHHHHcCC-------CCCCceEEEEEeCCCccCCC
Q 031796 88 LIFVVDSNDR----DRVVE---ARDELHRMLNED-------ELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 88 ~i~v~d~~~~----~s~~~---~~~~~~~~~~~~-------~~~~~pii~v~~K~Dl~~~~ 134 (153)
+++|+|+++. +.+.. +...+..+.... .....|+++|+||+|+++..
T Consensus 240 Lv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~ 300 (500)
T PRK12296 240 LVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR 300 (500)
T ss_pred EEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH
Confidence 9999999753 23333 333333322100 23468999999999997654
No 180
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.73 E-value=1.6e-16 Score=121.31 Aligned_cols=111 Identities=20% Similarity=0.229 Sum_probs=78.9
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCcc--cccC--ceeeEEEEEEEcCeEEEEEEcCCCCCchhc-----------HHH
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL-----------WRH 80 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~~~ 80 (153)
..++++++|.+++|||||++++++.... ...+ |.......+...+..+.+|||||..+.... ...
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 4589999999999999999999987632 2222 222333445556778999999997654322 134
Q ss_pred hhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031796 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 81 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~ 131 (153)
.++.+|++++|+|+++..+..... .+..... .+.|+++|+||+|+.
T Consensus 251 ~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~----~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 251 AIERADVVLLVLDATEGITEQDLR-IAGLILE----AGKALVIVVNKWDLV 296 (429)
T ss_pred HHHhCCEEEEEEECCCCccHHHHH-HHHHHHH----cCCcEEEEEECcccC
Confidence 678999999999998776654432 2222222 368999999999997
No 181
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.73 E-value=9.6e-17 Score=110.21 Aligned_cols=119 Identities=20% Similarity=0.279 Sum_probs=76.0
Q ss_pred hhhcccCccEEEEEcCCCCCHHHHHHhHhcCCcc-cccCceeeE--EEEEEEcCeEEEEEEcCCCC----------Cchh
Q 031796 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKNISFTVWDVGGQD----------KIRP 76 (153)
Q Consensus 10 ~~~~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~-~~~~t~~~~--~~~~~~~~~~~~i~D~~g~~----------~~~~ 76 (153)
+.......++++++|++|+|||||++++.+.++. ...++.+.+ ..... .+.++.+|||||.. .+..
T Consensus 17 ~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~~~~~~ 95 (196)
T PRK00454 17 EQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE-VNDKLRLVDLPGYGYAKVSKEEKEKWQK 95 (196)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe-cCCeEEEeCCCCCCCcCCCchHHHHHHH
Confidence 3445567799999999999999999999987633 223332211 11112 24789999999953 2333
Q ss_pred cHHHhhcC---CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 77 LWRHYFQN---TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 77 ~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
....+++. ++++++++|.+++.+... .++...+.. .++|+++++||+|+.+..
T Consensus 96 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~ 151 (196)
T PRK00454 96 LIEEYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKG 151 (196)
T ss_pred HHHHHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHH
Confidence 34444554 467888899876544332 122222222 368899999999987543
No 182
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.72 E-value=1.7e-16 Score=124.47 Aligned_cols=114 Identities=18% Similarity=0.226 Sum_probs=83.3
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCccccc-C--ceeeEEEEEEEcCe-EEEEEEcCCCCCchhcHHHhhcCCCEEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-P--TIGFNVETVEYKNI-SFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~-~--t~~~~~~~~~~~~~-~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 90 (153)
.+..+|+++|..++|||||++++.+.++.... + |..+....+...+. .+.+|||||++.|..++...++.+|++++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 56789999999999999999999887765332 2 33333344454444 89999999999999998888999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
|+|+++...-... ..+... . ..++|+++++||+|+.+.
T Consensus 165 VVda~dgv~~qT~-e~i~~~-~---~~~vPiIVviNKiDl~~~ 202 (587)
T TIGR00487 165 VVAADDGVMPQTI-EAISHA-K---AANVPIIVAINKIDKPEA 202 (587)
T ss_pred EEECCCCCCHhHH-HHHHHH-H---HcCCCEEEEEECcccccC
Confidence 9998763221111 112211 1 246899999999999753
No 183
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.71 E-value=4e-16 Score=125.57 Aligned_cols=126 Identities=21% Similarity=0.267 Sum_probs=89.2
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCcc-cccC--ceeeEEEEEEEcCeEEEEEEcCCCCCchhc----------HHHhh
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL----------WRHYF 82 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~~~ 82 (153)
+.++|+++|++|||||||+|++.+.+.. .+.+ |.......+...+.++.+||+||..++... ...++
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 4578999999999999999999987543 2223 455555667777889999999998766421 12232
Q ss_pred --cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC----CHhHHHHHhCCCcc
Q 031796 83 --QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSL 148 (153)
Q Consensus 83 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~----~~~~~~~~~~~~~~ 148 (153)
.++|++++|+|.++.++.. .++.+..+ .+.|+++++||+|+.+.. +.+++++.+|.+.+
T Consensus 82 ~~~~aD~vI~VvDat~ler~l---~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVv 146 (772)
T PRK09554 82 LSGDADLLINVVDASNLERNL---YLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVI 146 (772)
T ss_pred hccCCCEEEEEecCCcchhhH---HHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEE
Confidence 4789999999998865432 23333332 368999999999986432 35567777776543
No 184
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.71 E-value=2e-16 Score=127.06 Aligned_cols=112 Identities=20% Similarity=0.239 Sum_probs=85.0
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCcccc-c--CceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEE
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-I--PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~--~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 90 (153)
..+...|+++|..++|||||++++.+.++... . .|..+....+.+.+..+.+|||||++.|..++...++.+|++++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 36778999999999999999999987765532 1 13333334556667899999999999999999888999999999
Q ss_pred EEECCCc---ccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 91 VVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 91 v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
|+|+++. ++...+ ... ...++|+|+++||+|+.+.
T Consensus 367 VVdAddGv~~qT~e~i----~~a----~~~~vPiIVviNKiDl~~a 404 (787)
T PRK05306 367 VVAADDGVMPQTIEAI----NHA----KAAGVPIIVAINKIDKPGA 404 (787)
T ss_pred EEECCCCCCHhHHHHH----HHH----HhcCCcEEEEEECcccccc
Confidence 9999873 232222 211 1246899999999999754
No 185
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.71 E-value=2.8e-16 Score=118.07 Aligned_cols=117 Identities=21% Similarity=0.236 Sum_probs=82.1
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCCcc-cc--cCceeeEEEEEEEcC-eEEEEEEcCCCCCc-------hhcHHHhhcCCCE
Q 031796 19 RILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKN-ISFTVWDVGGQDKI-------RPLWRHYFQNTQG 87 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~~~-~~--~~t~~~~~~~~~~~~-~~~~i~D~~g~~~~-------~~~~~~~~~~~~~ 87 (153)
.|.++|.+++|||||+|++.+.+.. .. ..|.......+.... ..+.++||||..+- .......++++++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radv 240 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRV 240 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCE
Confidence 6999999999999999999987642 22 235556666666654 46999999996532 1222345789999
Q ss_pred EEEEEECC---CcccHHHHHHHHHHHHcC-CCCCCceEEEEEeCCCccCCCC
Q 031796 88 LIFVVDSN---DRDRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAMN 135 (153)
Q Consensus 88 ~i~v~d~~---~~~s~~~~~~~~~~~~~~-~~~~~~pii~v~~K~Dl~~~~~ 135 (153)
+++|+|++ +.+.+.....++..+... ....+.|+++|+||+|+.....
T Consensus 241 lL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e 292 (390)
T PRK12298 241 LLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE 292 (390)
T ss_pred EEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH
Confidence 99999988 344555555555544332 1224689999999999976543
No 186
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.71 E-value=3e-16 Score=109.42 Aligned_cols=109 Identities=17% Similarity=0.143 Sum_probs=76.7
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcccc------------------cCceeeE----EEEEE-----EcCeEEEEEEcCC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVTT------------------IPTIGFN----VETVE-----YKNISFTVWDVGG 70 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~~------------------~~t~~~~----~~~~~-----~~~~~~~i~D~~g 70 (153)
.+++++|+.++|||||+++++....... ....++. ...+. .....+.+|||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 3789999999999999999976432110 0111111 11221 2247899999999
Q ss_pred CCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031796 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~ 131 (153)
+.++.......++.+|++++|+|+++..+... ..++..... .+.|+++|+||+|+.
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence 99998888888999999999999987665532 233333322 258999999999975
No 187
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.71 E-value=9.1e-16 Score=97.20 Aligned_cols=103 Identities=21% Similarity=0.305 Sum_probs=70.7
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCCcc--cc--cCceeeEEEEEEEcCeEEEEEEcCCCCCc---------hhcHHHhhcCC
Q 031796 19 RILMVGLDAAGKTTILYKLKLGEIV--TT--IPTIGFNVETVEYKNISFTVWDVGGQDKI---------RPLWRHYFQNT 85 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~~~--~~--~~t~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~~~~ 85 (153)
+|+++|.+|+|||||+|++++.+.. .. ..|.......+......+.++||||-... .......+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 6899999999999999999986432 22 22444455666778889999999996432 11233344789
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeC
Q 031796 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 127 (153)
Q Consensus 86 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K 127 (153)
|++++|+|.+++. .+....+...++ .+.|+++|.||
T Consensus 81 d~ii~vv~~~~~~--~~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNPI--TEDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSHS--HHHHHHHHHHHH----TTSEEEEEEES
T ss_pred CEEEEEEECCCCC--CHHHHHHHHHHh----cCCCEEEEEcC
Confidence 9999999977631 122222222222 47999999998
No 188
>PTZ00099 rab6; Provisional
Probab=99.71 E-value=6.6e-17 Score=109.62 Aligned_cols=103 Identities=21% Similarity=0.381 Sum_probs=79.3
Q ss_pred ccCceeeEEEE--EE--EcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCce
Q 031796 45 TIPTIGFNVET--VE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120 (153)
Q Consensus 45 ~~~t~~~~~~~--~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p 120 (153)
+.||.+.++.. +. ...+.+.+|||+|++++...+..+++.+|++++|||++++++|..+..|+..+.... ..++|
T Consensus 9 ~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~-~~~~p 87 (176)
T PTZ00099 9 YQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER-GKDVI 87 (176)
T ss_pred CCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCe
Confidence 45677766632 22 345889999999999999999999999999999999999999999998888876543 25789
Q ss_pred EEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 121 LLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 121 ii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+++|+||+|+.... +...+++.++..++
T Consensus 88 iilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~ 120 (176)
T PTZ00099 88 IALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFH 120 (176)
T ss_pred EEEEEECcccccccCCCHHHHHHHHHHcCCEEE
Confidence 99999999996432 23344555554443
No 189
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.71 E-value=2.1e-16 Score=108.18 Aligned_cols=113 Identities=25% Similarity=0.223 Sum_probs=82.9
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcc---------------------cccCceeeEEEEEE--EcCeEEEEEEcCCC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV---------------------TTIPTIGFNVETVE--YKNISFTVWDVGGQ 71 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~---------------------~~~~t~~~~~~~~~--~~~~~~~i~D~~g~ 71 (153)
++.++|+++|+.++|||||+.+++...-. ....|.......+. .....+.++|+||+
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH 80 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc
Confidence 35689999999999999999999743210 01224555566676 78899999999999
Q ss_pred CCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 72 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
.+|.......++.+|++++|+|+.+.-... ....+..... .++|+++++||+|+..
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~----~~~p~ivvlNK~D~~~ 136 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILRE----LGIPIIVVLNKMDLIE 136 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHH----TT-SEEEEEETCTSSH
T ss_pred cceeecccceecccccceeeeecccccccc-cccccccccc----cccceEEeeeeccchh
Confidence 999888888899999999999997653322 2222222222 3688999999999983
No 190
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.71 E-value=3.6e-16 Score=125.67 Aligned_cols=114 Identities=21% Similarity=0.269 Sum_probs=81.2
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcc--cccC--ceeeEEEEEEEcCeEEEEEEcCCCCC--------chhcHHHhh
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDK--------IRPLWRHYF 82 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~ 82 (153)
....+|+++|.++||||||+|++.+.+.. ...| |...........+..+.+|||||.+. +......++
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 34478999999999999999999987643 2333 23333344556678999999999763 233345567
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 83 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
+.+|++++|+|+++. +......+...+.. .+.|+++|+||+|+...
T Consensus 353 ~~aD~iL~VvDa~~~--~~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~ 398 (712)
T PRK09518 353 SLADAVVFVVDGQVG--LTSTDERIVRMLRR---AGKPVVLAVNKIDDQAS 398 (712)
T ss_pred HhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECcccccc
Confidence 899999999999753 33333344444443 47899999999998654
No 191
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.70 E-value=2.7e-16 Score=101.47 Aligned_cols=120 Identities=26% Similarity=0.392 Sum_probs=91.3
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcc---cccCcee-eEEEEEEE---cCeEEEEEEcCCCCCc-hhcHHHhhcCCC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIG-FNVETVEY---KNISFTVWDVGGQDKI-RPLWRHYFQNTQ 86 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~---~~~~t~~-~~~~~~~~---~~~~~~i~D~~g~~~~-~~~~~~~~~~~~ 86 (153)
.+..|++++|..++|||+++..+.-++-. +..||+. +....++. ....+.++||.|...+ ..+-..+++-+|
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 45689999999999999999998765533 2234433 22233332 3357999999998777 556678889999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
++++||+..+++||+.+...-..+-++.....+||++++||+|+.++.
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~ 134 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPR 134 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccch
Confidence 999999999999998876655555556666889999999999997554
No 192
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.70 E-value=7.2e-16 Score=101.47 Aligned_cols=113 Identities=26% Similarity=0.287 Sum_probs=78.4
Q ss_pred EEcCCCCCHHHHHHhHhcCCccc--ccC--ceeeEEEEEEEc-CeEEEEEEcCCCCCchh-------cHHHhhcCCCEEE
Q 031796 22 MVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVEYK-NISFTVWDVGGQDKIRP-------LWRHYFQNTQGLI 89 (153)
Q Consensus 22 v~G~~~~GKSsli~~~~~~~~~~--~~~--t~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-------~~~~~~~~~~~~i 89 (153)
++|+.|+|||||++++.+..... ..+ +........... ...+.+||+||...+.. .....++.+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 58999999999999998875441 111 222222333333 67999999999876543 3345778999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHH
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI 139 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~ 139 (153)
+|+|.++........ +...... .+.|+++|+||+|+.........
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~~~~----~~~~~ivv~nK~D~~~~~~~~~~ 125 (163)
T cd00880 81 FVVDADLRADEEEEK-LLELLRE----RGKPVLLVLNKIDLLPEEEEEEL 125 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHHHHh----cCCeEEEEEEccccCChhhHHHH
Confidence 999999877666554 2222222 47899999999999876554443
No 193
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.69 E-value=2.7e-16 Score=110.22 Aligned_cols=114 Identities=27% Similarity=0.388 Sum_probs=75.4
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCCcc-cc---cCceeeEEEEEEE-cCeEEEEEEcCCCCCch-----hcHHHhhcCCCEE
Q 031796 19 RILMVGLDAAGKTTILYKLKLGEIV-TT---IPTIGFNVETVEY-KNISFTVWDVGGQDKIR-----PLWRHYFQNTQGL 88 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~~~-~~---~~t~~~~~~~~~~-~~~~~~i~D~~g~~~~~-----~~~~~~~~~~~~~ 88 (153)
||++||+.+|||||+.+.++.+-.+ .+ .+|..++...+.. ..+.+++||+||+..+- ......++++.++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 7999999999999999888766443 12 4677777776764 45799999999997553 3467788999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcC--CCCCCceEEEEEeCCCccCC
Q 031796 89 IFVVDSNDRDRVVEARDELHRMLNE--DELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~pii~v~~K~Dl~~~ 133 (153)
|||+|+.+.+ +.+...++...+.. ...+++.+-+..||+|+..+
T Consensus 81 IyV~D~qs~~-~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~ 126 (232)
T PF04670_consen 81 IYVFDAQSDD-YDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSE 126 (232)
T ss_dssp EEEEETT-ST-CHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-H
T ss_pred EEEEEccccc-HHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCH
Confidence 9999997443 33333333333222 12378999999999998654
No 194
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.69 E-value=6.4e-16 Score=121.48 Aligned_cols=111 Identities=21% Similarity=0.244 Sum_probs=85.7
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC--Ccccc-----------------cCceeeEEEEEEEcCeEEEEEEcCCCCCchhcH
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG--EIVTT-----------------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~--~~~~~-----------------~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 78 (153)
.+|+++|..++|||||+.+++.. .+... ..|+......+.+.+.++.+|||||+.+|...+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 58999999999999999999853 12110 124445556778889999999999999999888
Q ss_pred HHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 79 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
...++.+|++++|+|+++. .......+|..... .++|+++|+||+|+.++
T Consensus 82 ~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a 131 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPSA 131 (594)
T ss_pred HHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH----CCCCEEEEEECCCCCCc
Confidence 9999999999999999763 23334445555444 36889999999998754
No 195
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.69 E-value=4.8e-16 Score=124.96 Aligned_cols=119 Identities=19% Similarity=0.257 Sum_probs=83.6
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCc--ccccC--ceeeEEEEEEEcCeEEEEEEcCCCCC----------chhc-HHH
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQDK----------IRPL-WRH 80 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~-~~~ 80 (153)
..++|+++|.++||||||++++++.+. ....+ |.......+...+..+.+|||||..+ +... ...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 358999999999999999999998874 23333 33333345566777889999999532 1111 123
Q ss_pred hhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHH
Q 031796 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI 139 (153)
Q Consensus 81 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~ 139 (153)
.++.+|++++|+|+++..++.... .+..+.. .+.|+++|+||+|+.+....+.+
T Consensus 529 ~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~ 582 (712)
T PRK09518 529 AIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRL 582 (712)
T ss_pred HhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHH
Confidence 468899999999999887776553 2333322 36899999999999765443333
No 196
>COG1159 Era GTPase [General function prediction only]
Probab=99.69 E-value=2.3e-16 Score=112.27 Aligned_cols=115 Identities=21% Similarity=0.230 Sum_probs=82.4
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCcc--cccC--ceeeEEEEEEEcCeEEEEEEcCCCCCchh--------cHHHhhc
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP--------LWRHYFQ 83 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~ 83 (153)
+.--++++|.|++|||||+|++.+.+.. +..| |...-.+.++....++.+.||||-..-+. .....+.
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~ 84 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALK 84 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence 4456899999999999999999999865 3333 33333445556678999999999543322 2344567
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCC
Q 031796 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (153)
Q Consensus 84 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~ 135 (153)
.+|+++||+|+++. +.....++.+.++. .+.|++++.||+|..+...
T Consensus 85 dvDlilfvvd~~~~--~~~~d~~il~~lk~---~~~pvil~iNKID~~~~~~ 131 (298)
T COG1159 85 DVDLILFVVDADEG--WGPGDEFILEQLKK---TKTPVILVVNKIDKVKPKT 131 (298)
T ss_pred cCcEEEEEEecccc--CCccHHHHHHHHhh---cCCCeEEEEEccccCCcHH
Confidence 89999999999763 33344444444443 4689999999999887665
No 197
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.69 E-value=8.4e-16 Score=108.52 Aligned_cols=80 Identities=21% Similarity=0.296 Sum_probs=61.6
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCCcc-cc--cCceeeEEEEEEEcCeEEEEEEcCCCCCch-------hcHHHhhcCCCEE
Q 031796 19 RILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKNISFTVWDVGGQDKIR-------PLWRHYFQNTQGL 88 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~~~-~~--~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~~~~ 88 (153)
+++++|++|+|||||++++.+.... .. ..|.......+...+..+++||+||..+.. ......++++|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 6899999999999999999987532 22 234445566677788999999999975432 1234568899999
Q ss_pred EEEEECCCcc
Q 031796 89 IFVVDSNDRD 98 (153)
Q Consensus 89 i~v~d~~~~~ 98 (153)
++|+|+++..
T Consensus 82 l~V~D~t~~~ 91 (233)
T cd01896 82 LMVLDATKPE 91 (233)
T ss_pred EEEecCCcch
Confidence 9999998765
No 198
>PRK10218 GTP-binding protein; Provisional
Probab=99.69 E-value=9.8e-16 Score=120.47 Aligned_cols=115 Identities=20% Similarity=0.202 Sum_probs=85.0
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcC--Ccccc-------------cC----ceeeEEEEEEEcCeEEEEEEcCCCCCch
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLG--EIVTT-------------IP----TIGFNVETVEYKNISFTVWDVGGQDKIR 75 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~--~~~~~-------------~~----t~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (153)
.+-.||+++|..++|||||+++++.. .+... .. |.......+.+.+.++++|||||+.+|.
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~ 82 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG 82 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH
Confidence 34579999999999999999999862 22211 11 2333345566788999999999999999
Q ss_pred hcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 76 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
..+..+++.+|++++|+|+++.... .....+..... .++|.++++||+|+.++.
T Consensus 83 ~~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~----~gip~IVviNKiD~~~a~ 136 (607)
T PRK10218 83 GEVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA----YGLKPIVVINKVDRPGAR 136 (607)
T ss_pred HHHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH----cCCCEEEEEECcCCCCCc
Confidence 9999999999999999999764222 22333333333 367889999999997654
No 199
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.69 E-value=7.7e-16 Score=110.72 Aligned_cols=125 Identities=19% Similarity=0.224 Sum_probs=89.1
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCcc-cc--cCceeeEEEEEEEcCeEEEEEEcCCCC--Cchhc------HHHhhc-
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKNISFTVWDVGGQD--KIRPL------WRHYFQ- 83 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~-~~--~~t~~~~~~~~~~~~~~~~i~D~~g~~--~~~~~------~~~~~~- 83 (153)
....+++.|.|+||||||++++.+.+.. .+ ..|-++..+.+.....+++++||||.- ..... ....++
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~h 246 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRH 246 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHH
Confidence 5588999999999999999999887643 33 346778888888899999999999942 11111 111222
Q ss_pred CCCEEEEEEECCCccc--HHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHh
Q 031796 84 NTQGLIFVVDSNDRDR--VVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKL 143 (153)
Q Consensus 84 ~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~ 143 (153)
=.++++|++|.+..+. .+.-...+.++... -..|+++|.||+|+.+.+..+++....
T Consensus 247 l~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~~ 305 (346)
T COG1084 247 LAGVILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEASV 305 (346)
T ss_pred hcCeEEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHHH
Confidence 3588999999987664 44445555555433 248999999999999777666655443
No 200
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.68 E-value=2.5e-16 Score=120.09 Aligned_cols=123 Identities=19% Similarity=0.273 Sum_probs=100.1
Q ss_pred cccCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEE---EEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV---ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~---~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
...+.++|+++|+.|+||||||-++....+++..|..-..+ ..++...+...+.|++..++-+......++++|+++
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~ 84 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC 84 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence 34678999999999999999999999998886654322221 233344566889999988877777778899999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCC--CCCceEEEEEeCCCccCCCC
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAMN 135 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~pii~v~~K~Dl~~~~~ 135 (153)
++|+.+++++++.+..+|.+.+++.. -.+.|||+||||+|......
T Consensus 85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~ 132 (625)
T KOG1707|consen 85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNEN 132 (625)
T ss_pred EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccc
Confidence 99999999999999999999988754 25799999999999986543
No 201
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.68 E-value=9.4e-16 Score=107.32 Aligned_cols=109 Identities=17% Similarity=0.127 Sum_probs=76.9
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCc--c----------cc-------cCceeeEEEEEEEc----------CeEEEEEEc
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEI--V----------TT-------IPTIGFNVETVEYK----------NISFTVWDV 68 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~--~----------~~-------~~t~~~~~~~~~~~----------~~~~~i~D~ 68 (153)
.+++++|..++|||||+.+++...- . .. ..|+........+. ...+.+|||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 4799999999999999999974321 0 00 01212112222222 678999999
Q ss_pred CCCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031796 69 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 69 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~ 131 (153)
||+++|.......++.+|++++|+|+++....... ..+..... .++|+++++||+|+.
T Consensus 81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHHH----cCCCEEEEEECCCcc
Confidence 99999999999999999999999999876544432 22233222 257899999999986
No 202
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.68 E-value=1.3e-15 Score=120.10 Aligned_cols=126 Identities=21% Similarity=0.235 Sum_probs=87.6
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCC--c-----c----cc---c----CceeeEEEEEEE-----cCeEEEEEEcCCC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGE--I-----V----TT---I----PTIGFNVETVEY-----KNISFTVWDVGGQ 71 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~--~-----~----~~---~----~t~~~~~~~~~~-----~~~~~~i~D~~g~ 71 (153)
.+..+++++|..++|||||+.+++... + . .. + .|.......+.+ ..+.+++|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 345799999999999999999997531 1 0 00 1 122222233333 3588999999999
Q ss_pred CCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCC---HhHHHHHhCC
Q 031796 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGL 145 (153)
Q Consensus 72 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~---~~~~~~~~~~ 145 (153)
.+|...+...++.+|++++|+|+++.........+... .. .++|+++|+||+|+.+... .+++.+.+++
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~-~~----~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~ 156 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLA-LE----NDLEIIPVLNKIDLPAADPERVKQEIEDVIGI 156 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHH-HH----CCCCEEEEEECCCCCcccHHHHHHHHHHHhCC
Confidence 99998899999999999999999886555444333322 22 3689999999999975432 2345555554
No 203
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.68 E-value=7.1e-16 Score=119.78 Aligned_cols=128 Identities=21% Similarity=0.256 Sum_probs=91.3
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcC--Ccc---------------c----c----cCceeeEEEEEEEcCeEEEEEEcC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLG--EIV---------------T----T----IPTIGFNVETVEYKNISFTVWDVG 69 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~--~~~---------------~----~----~~t~~~~~~~~~~~~~~~~i~D~~ 69 (153)
.+..+++++|..++|||||+++++.. ... . . ..+.......+.+.+..+++||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 46789999999999999999999631 100 0 0 012233345677788999999999
Q ss_pred CCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCC---HhHHHHHhCCC
Q 031796 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLH 146 (153)
Q Consensus 70 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~---~~~~~~~~~~~ 146 (153)
|+.+|.......++.+|++++|+|+++.... .....+... .. .++|+++++||+|+..... .+++.+.++..
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~-~~---~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~~ 162 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVC-RL---RDTPIFTFINKLDRDGREPLELLDEIEEVLGIA 162 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHH-Hh---cCCCEEEEEECCcccccCHHHHHHHHHHHhCCC
Confidence 9999988777889999999999999864322 222333322 22 4789999999999886543 35677777765
Q ss_pred c
Q 031796 147 S 147 (153)
Q Consensus 147 ~ 147 (153)
.
T Consensus 163 ~ 163 (526)
T PRK00741 163 C 163 (526)
T ss_pred C
Confidence 3
No 204
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.68 E-value=2.2e-15 Score=115.26 Aligned_cols=115 Identities=18% Similarity=0.235 Sum_probs=79.5
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcc--cccCcee--eEEEEEEEcCeEEEEEEcCCCCCchhc-----------HH
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIG--FNVETVEYKNISFTVWDVGGQDKIRPL-----------WR 79 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~--~~~~t~~--~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~~ 79 (153)
...++|+++|.+++|||||++++++.... ...+.+. .....+...+..+.+|||||....... ..
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 35699999999999999999999976532 2333222 223345567788999999996432111 12
Q ss_pred HhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 80 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
..++.+|++++|+|+++..+..... .+..... ...|+++|+||+|+.+..
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~----~~~~~ivv~NK~Dl~~~~ 300 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDLR-IAGLALE----AGRALVIVVNKWDLVDEK 300 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCcEEEEEECccCCCHH
Confidence 4678899999999998876654432 2222222 358999999999997543
No 205
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.68 E-value=4.5e-16 Score=103.84 Aligned_cols=112 Identities=24% Similarity=0.291 Sum_probs=71.0
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCCCCchhc----HHHhhcCCCEEEEEEEC
Q 031796 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL----WRHYFQNTQGLIFVVDS 94 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----~~~~~~~~~~~i~v~d~ 94 (153)
+|+++|.+++|||||++++.+.. ....++... ..... .+|||||....... ....++++|++++|+|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~-~~~~~~~~v-----~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~ 74 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY-TLARKTQAV-----EFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGA 74 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC-ccCccceEE-----EECCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeC
Confidence 79999999999999999987653 111122221 22111 36999997322211 12346899999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC--CHhHHHHHhCC
Q 031796 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGL 145 (153)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~--~~~~~~~~~~~ 145 (153)
++.+++.. .++... . ...|+++++||+|+.+.. ...++.+++++
T Consensus 75 ~~~~s~~~--~~~~~~-~----~~~~ii~v~nK~Dl~~~~~~~~~~~~~~~~~ 120 (158)
T PRK15467 75 NDPESRLP--AGLLDI-G----VSKRQIAVISKTDMPDADVAATRKLLLETGF 120 (158)
T ss_pred CCcccccC--HHHHhc-c----CCCCeEEEEEccccCcccHHHHHHHHHHcCC
Confidence 98876532 333332 1 357899999999996532 12334445553
No 206
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.68 E-value=7.9e-16 Score=120.97 Aligned_cols=109 Identities=21% Similarity=0.150 Sum_probs=81.1
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCC---cc-ccc--CceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGE---IV-TTI--PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~---~~-~~~--~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 91 (153)
+.|+++|..++|||||++++.+.. +. +.. .|....+..+...+..+.+||+||++.|.......+.++|++++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 468999999999999999998743 22 112 244445556677778999999999999988888888999999999
Q ss_pred EECCC---cccHHHHHHHHHHHHcCCCCCCce-EEEEEeCCCccCCC
Q 031796 92 VDSND---RDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAM 134 (153)
Q Consensus 92 ~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p-ii~v~~K~Dl~~~~ 134 (153)
+|+++ +++...+. .+.. .++| +++|+||+|+.+..
T Consensus 81 VDa~~G~~~qT~ehl~-----il~~---lgi~~iIVVlNK~Dlv~~~ 119 (581)
T TIGR00475 81 VDADEGVMTQTGEHLA-----VLDL---LGIPHTIVVITKADRVNEE 119 (581)
T ss_pred EECCCCCcHHHHHHHH-----HHHH---cCCCeEEEEEECCCCCCHH
Confidence 99987 33333221 1221 2466 99999999997644
No 207
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.68 E-value=2.3e-15 Score=108.30 Aligned_cols=124 Identities=20% Similarity=0.167 Sum_probs=87.7
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCC-----cc---------c-------ccCceeeEEEEEEEcCeEEEEEEcCCCCCchhc
Q 031796 19 RILMVGLDAAGKTTILYKLKLGE-----IV---------T-------TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~-----~~---------~-------~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 77 (153)
+|.++|.+++|||||+++++... .. . ...|+......+.+.+.++.++||||+.++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 58999999999999999996311 00 0 011344445667778899999999999988888
Q ss_pred HHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC---CHhHHHHHhCCCc
Q 031796 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHS 147 (153)
Q Consensus 78 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~---~~~~~~~~~~~~~ 147 (153)
+...++.+|++++|+|+.+...-. ....+... .. .++|+++++||+|+.+.. ..+++.+.++...
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~-~~---~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~ 148 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQA-DR---YNVPRIAFVNKMDRTGADFFRVVEQIREKLGANP 148 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHH-HH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCc
Confidence 888999999999999997643221 12222222 22 368999999999997643 2456666666543
No 208
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.67 E-value=8.6e-16 Score=120.92 Aligned_cols=118 Identities=16% Similarity=0.262 Sum_probs=83.1
Q ss_pred cCCCCCHHHHHHhHhcCCcc-cccCce--eeEEEEEEEcCeEEEEEEcCCCCCchhc------HHHhh--cCCCEEEEEE
Q 031796 24 GLDAAGKTTILYKLKLGEIV-TTIPTI--GFNVETVEYKNISFTVWDVGGQDKIRPL------WRHYF--QNTQGLIFVV 92 (153)
Q Consensus 24 G~~~~GKSsli~~~~~~~~~-~~~~t~--~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~~~~i~v~ 92 (153)
|++|+|||||+|++.+.+.. .+.|.+ ......++.++.++++|||||+.++... ...++ +.+|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 89999999999999988753 344433 3344556677788999999999877543 23333 3789999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC----CHhHHHHHhCCCcc
Q 031796 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSL 148 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~----~~~~~~~~~~~~~~ 148 (153)
|.++.+.. ..+..+..+ .+.|+++|+||+|+.++. +.+++++.+|.+.+
T Consensus 81 Dat~ler~---l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv 133 (591)
T TIGR00437 81 DASNLERN---LYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVV 133 (591)
T ss_pred cCCcchhh---HHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEE
Confidence 99875432 222233322 368999999999986432 35677788877654
No 209
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.67 E-value=1.3e-15 Score=109.66 Aligned_cols=122 Identities=21% Similarity=0.236 Sum_probs=85.9
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCCcc-----c----------------ccCceeeEEEEEEEcCeEEEEEEcCCCCCchhc
Q 031796 19 RILMVGLDAAGKTTILYKLKLGEIV-----T----------------TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~~~-----~----------------~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 77 (153)
+|+++|.+|+|||||+++++...-. . ...+.......+.+.+..+.+|||||+.++...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 5899999999999999998743210 0 012233344566778899999999999888777
Q ss_pred HHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC---CHhHHHHHhCC
Q 031796 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGL 145 (153)
Q Consensus 78 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~---~~~~~~~~~~~ 145 (153)
+...++.+|++++|+|+++....... ..|... .. .++|+++++||+|+.... ..+++.+.++.
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~~~~-~~---~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~ 146 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTE-KLWEFA-DE---AGIPRIIFINKMDRERADFDKTLAALQEAFGR 146 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHH-HH---cCCCEEEEEECCccCCCCHHHHHHHHHHHhCC
Confidence 88889999999999999876544322 222222 22 368999999999988653 23445555554
No 210
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.67 E-value=8.6e-16 Score=106.79 Aligned_cols=110 Identities=20% Similarity=0.135 Sum_probs=74.1
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCCcc-c---------------------------------ccCceeeEEEEEEEcCeEEE
Q 031796 19 RILMVGLDAAGKTTILYKLKLGEIV-T---------------------------------TIPTIGFNVETVEYKNISFT 64 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~~~-~---------------------------------~~~t~~~~~~~~~~~~~~~~ 64 (153)
+|+++|.+++|||||+++++...-. . ...|.......+...+.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 5899999999999999999653210 0 01133333445556778999
Q ss_pred EEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 65 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
+|||||+++|.......++.+|++++|+|+++...-. ... ...+.... ...++|+|+||+|+..
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~-~~~~~~~~--~~~~iIvviNK~D~~~ 144 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRR-HSYILSLL--GIRHVVVAVNKMDLVD 144 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHH-HHHHHHHc--CCCcEEEEEEchhccc
Confidence 9999999888666666789999999999997652211 111 11122221 1245888999999875
No 211
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=5.1e-16 Score=105.36 Aligned_cols=126 Identities=28% Similarity=0.407 Sum_probs=102.4
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhc---CCCEEEEEEE
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ---NTQGLIFVVD 93 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---~~~~~i~v~d 93 (153)
+-.++++|+.+||||+|+-.+..+....+.++...+...+....-..++.|.||+.+.+.....+++ ++-+++||+|
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVD 117 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVD 117 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEEEe
Confidence 3679999999999999999998887777777777778888887778999999999999888888887 7999999999
Q ss_pred CCCc-ccHHHHHHHHHHHHcCC--CCCCceEEEEEeCCCccCCCCHhHHHHH
Q 031796 94 SNDR-DRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAMNAAEITDK 142 (153)
Q Consensus 94 ~~~~-~s~~~~~~~~~~~~~~~--~~~~~pii~v~~K~Dl~~~~~~~~~~~~ 142 (153)
.... ........++..++... ....+|+++.+||.|+.-+..++.+.+.
T Consensus 118 Sa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~ 169 (238)
T KOG0090|consen 118 SATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQ 169 (238)
T ss_pred ccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHH
Confidence 7643 34566677777776554 4578999999999999887765554443
No 212
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.67 E-value=6.9e-16 Score=117.66 Aligned_cols=117 Identities=21% Similarity=0.202 Sum_probs=81.0
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCC--cc--------------------------------cccCceeeEEEEEEEc
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGE--IV--------------------------------TTIPTIGFNVETVEYK 59 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~--~~--------------------------------~~~~t~~~~~~~~~~~ 59 (153)
.+..++++++|..++|||||+++++... .. ....|.......++..
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 4667999999999999999999997321 00 0112455555667778
Q ss_pred CeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
+..+.+|||||+++|.......++.+|++++|+|+++...+.....+........ ...|+++++||+|+.+
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVN 153 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEcccccc
Confidence 8999999999999886655556789999999999986312222111222222221 2247999999999975
No 213
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.67 E-value=9.2e-16 Score=106.27 Aligned_cols=113 Identities=17% Similarity=0.141 Sum_probs=71.8
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcc--cc----cCceeeEEEEEEEc---------------------------C----
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIV--TT----IPTIGFNVETVEYK---------------------------N---- 60 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~--~~----~~t~~~~~~~~~~~---------------------------~---- 60 (153)
+++.++|+.|+|||||+.++.+.... .. ..+....+....+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 47899999999999999998654211 00 11111111111111 2
Q ss_pred --eEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 61 --ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 61 --~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
..+.+|||||++.+.......+..+|++++|+|++++.........+...... ...|+++|+||+|+.+.
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~ 152 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKE 152 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCH
Confidence 67999999999988777777788899999999998631111111112211111 12579999999999753
No 214
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.66 E-value=2e-15 Score=120.46 Aligned_cols=112 Identities=21% Similarity=0.274 Sum_probs=82.2
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCcccc-c--CceeeEEEE--EEE--cCeEEEEEEcCCCCCchhcHHHhhcCCC
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-I--PTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~--~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 86 (153)
..+..+|+++|..++|||||++++.+..+... . .|..+.... +.. ....+.+|||||++.|..++...++.+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 35678999999999999999999988765422 1 122222222 222 3489999999999999999998999999
Q ss_pred EEEEEEECCCc---ccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 87 GLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 87 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
++++|+|+++. +++..+ ... . ..++|+++++||+|+...
T Consensus 321 iaILVVDA~dGv~~QT~E~I----~~~-k---~~~iPiIVViNKiDl~~~ 362 (742)
T CHL00189 321 IAILIIAADDGVKPQTIEAI----NYI-Q---AANVPIIVAINKIDKANA 362 (742)
T ss_pred EEEEEEECcCCCChhhHHHH----HHH-H---hcCceEEEEEECCCcccc
Confidence 99999998764 333222 211 1 246899999999999764
No 215
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.66 E-value=2.8e-15 Score=112.39 Aligned_cols=115 Identities=18% Similarity=0.308 Sum_probs=86.5
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcc--cccC--ceeeEEEEEEEcCeEEEEEEcCCCCCchhcH--------HHhh
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLW--------RHYF 82 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~~ 82 (153)
...+|++++|.|++|||||+|.+.++... +..| |.++-...+...++++.+.||+|-.+..... ...+
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence 55689999999999999999999988743 5544 5666667889999999999999977654442 3456
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCC
Q 031796 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (153)
Q Consensus 83 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~ 135 (153)
+++|.+++|+|.+.+.+-... .+... ...+.|+++|.||.|+..+..
T Consensus 295 ~~ADlvL~v~D~~~~~~~~d~--~~~~~----~~~~~~~i~v~NK~DL~~~~~ 341 (454)
T COG0486 295 EEADLVLFVLDASQPLDKEDL--ALIEL----LPKKKPIIVVLNKADLVSKIE 341 (454)
T ss_pred HhCCEEEEEEeCCCCCchhhH--HHHHh----cccCCCEEEEEechhcccccc
Confidence 889999999999875222111 11211 124789999999999987654
No 216
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.66 E-value=1.3e-15 Score=119.52 Aligned_cols=109 Identities=21% Similarity=0.201 Sum_probs=78.0
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCcccccC-----ceeeEEEEEEE----------------cCeEEEEEEcCCCCCc
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIGFNVETVEY----------------KNISFTVWDVGGQDKI 74 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~-----t~~~~~~~~~~----------------~~~~~~i~D~~g~~~~ 74 (153)
+..-|+++|..++|||||++++.+..+....+ +.+......+. ....+.+|||||++.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 44569999999999999999999876653221 22222211111 0123889999999999
Q ss_pred hhcHHHhhcCCCEEEEEEECCC---cccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 75 RPLWRHYFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 75 ~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
..++...++.+|++++|+|+++ ++++..+. .+.. .+.|+++++||+|+..
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~-----~l~~---~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEALN-----ILRM---YKTPFVVAANKIDRIP 135 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH-----HHHH---cCCCEEEEEECCCccc
Confidence 9999989999999999999986 34443332 1122 3689999999999964
No 217
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.65 E-value=9.1e-16 Score=117.04 Aligned_cols=117 Identities=21% Similarity=0.148 Sum_probs=81.4
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcC--Cccc--------------------------------ccCceeeEEEEEEEc
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLG--EIVT--------------------------------TIPTIGFNVETVEYK 59 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~--~~~~--------------------------------~~~t~~~~~~~~~~~ 59 (153)
.+..++++++|..++|||||+.+++.. .... ...|.......+...
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 466799999999999999999999742 1110 012344445556667
Q ss_pred CeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHH-HHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
...+.+||+||+++|.......++.+|++++|+|+++.+++..... +...+.... ...|+++++||+|+.+
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVN 155 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccC
Confidence 8899999999999887666666789999999999988754321111 111121211 2357999999999974
No 218
>PRK13351 elongation factor G; Reviewed
Probab=99.65 E-value=2.5e-15 Score=120.62 Aligned_cols=126 Identities=18% Similarity=0.167 Sum_probs=93.4
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCC-------------cc--------cccCceeeEEEEEEEcCeEEEEEEcCCCCC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGE-------------IV--------TTIPTIGFNVETVEYKNISFTVWDVGGQDK 73 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~-------------~~--------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~ 73 (153)
.+.+||+++|..++|||||+++++... .. ....|+......+.+....+.+|||||+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 456899999999999999999997421 00 012345555667788899999999999999
Q ss_pred chhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC---CHhHHHHHhCC
Q 031796 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGL 145 (153)
Q Consensus 74 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~---~~~~~~~~~~~ 145 (153)
+...+...++.+|++++|+|+++........ .|... .. .++|+++++||+|+.... ..+++.+.++.
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~-~~~~~-~~---~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~ 155 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTET-VWRQA-DR---YGIPRLIFINKMDRVGADLFKVLEDIEERFGK 155 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHH-Hh---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHCC
Confidence 9888899999999999999998766554432 23332 22 368999999999998753 23445555554
No 219
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.65 E-value=1.9e-15 Score=109.13 Aligned_cols=111 Identities=15% Similarity=0.237 Sum_probs=69.8
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCCcccc-----------cCceeeEEE--EEEEcC--eEEEEEEcCCCCCchh---c-
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-----------IPTIGFNVE--TVEYKN--ISFTVWDVGGQDKIRP---L- 77 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~~~~~-----------~~t~~~~~~--~~~~~~--~~~~i~D~~g~~~~~~---~- 77 (153)
.++|+++|++|+|||||+|++++..+... .+|...... .+...+ +++.+|||||-..... .
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 58999999999999999999998876422 234444333 233334 6899999999432211 0
Q ss_pred ----------------------HHHhhc--CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 78 ----------------------WRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 78 ----------------------~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
+...+. ++|+++++++.+.. ........+...+.. .+|+++|+||+|+..
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~~----~v~vi~VinK~D~l~ 157 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLSK----RVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHhc----cCCEEEEEECCCcCC
Confidence 101222 47888888887642 222222222222222 589999999999865
No 220
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=7.9e-16 Score=102.51 Aligned_cols=117 Identities=24% Similarity=0.378 Sum_probs=101.2
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEEEEEE----cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEE
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 90 (153)
-.++++++|..|.||||++++.+-+.|.. ..+|.+.+...... ..+++..|||.|++.+.-....++=+..+.++
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 36899999999999999999999999884 47788888765433 24899999999999999998888889999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
+||.+..-++.++..|..++.... .++||++.|||.|..+..
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~ 130 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARK 130 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceeccccc
Confidence 999999989999999999887654 469999999999987654
No 221
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.64 E-value=6.6e-15 Score=114.46 Aligned_cols=128 Identities=22% Similarity=0.273 Sum_probs=88.9
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhc--CCccc-------------------c----cCceeeEEEEEEEcCeEEEEEEcC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKL--GEIVT-------------------T----IPTIGFNVETVEYKNISFTVWDVG 69 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~--~~~~~-------------------~----~~t~~~~~~~~~~~~~~~~i~D~~ 69 (153)
.+.++++++|..++|||||+++++. +.... . ..+.......+++++..+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 5678999999999999999999853 11100 0 012223345677788999999999
Q ss_pred CCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC---CHhHHHHHhCCC
Q 031796 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLH 146 (153)
Q Consensus 70 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~---~~~~~~~~~~~~ 146 (153)
|+.+|.......++.+|++++|+|+++.-. ......+. .... .++|+++++||+|+.... -.+++.+.++..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~-~~~~---~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~~ 163 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLME-VTRL---RDTPIFTFMNKLDRDIRDPLELLDEVENELKIN 163 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHH-HHHh---cCCCEEEEEECccccCCCHHHHHHHHHHHhCCC
Confidence 999888777778899999999999976411 11222332 3232 468999999999987533 245566666654
Q ss_pred c
Q 031796 147 S 147 (153)
Q Consensus 147 ~ 147 (153)
.
T Consensus 164 ~ 164 (527)
T TIGR00503 164 C 164 (527)
T ss_pred C
Confidence 3
No 222
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.64 E-value=1.4e-15 Score=104.87 Aligned_cols=108 Identities=18% Similarity=0.201 Sum_probs=68.9
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceee-----EEEEEEE-cCeEEEEEEcCCCCCchhcHHHh-----hcC
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF-----NVETVEY-KNISFTVWDVGGQDKIRPLWRHY-----FQN 84 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~-----~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~-----~~~ 84 (153)
++||+++|++|+|||||+|++.+..... ..++.+. ....+.. ....+.+||+||..........+ +.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 4789999999999999999999865432 1122221 1111111 12378999999976443322233 567
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031796 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 85 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~ 131 (153)
+|+++++.+ .++.+....+...+... ..|+++|+||+|+-
T Consensus 81 ~d~~l~v~~----~~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~ 120 (197)
T cd04104 81 YDFFIIISS----TRFSSNDVKLAKAIQCM---GKKFYFVRTKVDRD 120 (197)
T ss_pred cCEEEEEeC----CCCCHHHHHHHHHHHHh---CCCEEEEEecccch
Confidence 888888744 23555555555555442 57899999999984
No 223
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.63 E-value=1.4e-14 Score=116.17 Aligned_cols=128 Identities=20% Similarity=0.166 Sum_probs=92.2
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCC--c---cc----------------ccCceeeEEEEEEEcCeEEEEEEcCCCCC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGE--I---VT----------------TIPTIGFNVETVEYKNISFTVWDVGGQDK 73 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~--~---~~----------------~~~t~~~~~~~~~~~~~~~~i~D~~g~~~ 73 (153)
.+-.+|.++|..++|||||+++++... . .. ...|+......+.+.+.++.+|||||+.+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD 87 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence 456799999999999999999996421 1 00 01244455567778899999999999998
Q ss_pred chhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC---CHhHHHHHhCCCc
Q 031796 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHS 147 (153)
Q Consensus 74 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~---~~~~~~~~~~~~~ 147 (153)
+...+...++.+|++++|+|+++....... ..+... .. .++|+++++||+|+.... ..+++.+.++...
T Consensus 88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~-~~---~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~ 159 (689)
T TIGR00484 88 FTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQA-NR---YEVPRIAFVNKMDKTGANFLRVVNQIKQRLGANA 159 (689)
T ss_pred hhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHH-HH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCc
Confidence 887888889999999999999875444322 222322 22 368999999999998654 3455666666543
No 224
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.62 E-value=5.4e-15 Score=116.21 Aligned_cols=110 Identities=23% Similarity=0.268 Sum_probs=78.2
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCcccccC-----ceeeEEEEEEE------cC-----e-----EEEEEEcCCCC
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIGFNVETVEY------KN-----I-----SFTVWDVGGQD 72 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~-----t~~~~~~~~~~------~~-----~-----~~~i~D~~g~~ 72 (153)
..++..|+++|..++|||||++++.+.......+ +.+........ .. . .+.+|||||++
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 4567789999999999999999998765443222 22222211110 00 1 26899999999
Q ss_pred CchhcHHHhhcCCCEEEEEEECCC---cccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031796 73 KIRPLWRHYFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 73 ~~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~ 131 (153)
.|...+...++.+|++++|+|+++ ++++..+. .+.. .++|+++++||+|+.
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~-----~~~~---~~vpiIvviNK~D~~ 136 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAIN-----ILKR---RKTPFVVAANKIDRI 136 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH-----HHHH---cCCCEEEEEECcCCc
Confidence 999888888899999999999987 44444432 1122 368999999999985
No 225
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.61 E-value=6.6e-15 Score=103.13 Aligned_cols=111 Identities=22% Similarity=0.200 Sum_probs=75.6
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCC---------------------------cccc-------cCceeeEEEEEEEcCeEEE
Q 031796 19 RILMVGLDAAGKTTILYKLKLGE---------------------------IVTT-------IPTIGFNVETVEYKNISFT 64 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~---------------------------~~~~-------~~t~~~~~~~~~~~~~~~~ 64 (153)
+|+++|..++|||||+.+++... +... ..|.......+...+.++.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 58999999999999999985321 0000 1133344456677889999
Q ss_pred EEEcCCCCCchhcHHHhhcCCCEEEEEEECCCccc---H---HHHHHHHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR---V---VEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 65 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
+|||||+..+.......++.+|++++|+|+++... + ......+... ... ...|+++++||+|+..
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~iiivvNK~Dl~~ 151 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTL--GVKQLIVAVNKMDDVT 151 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHc--CCCeEEEEEEcccccc
Confidence 99999998887766777788999999999987421 1 1111222211 111 2368999999999974
No 226
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.61 E-value=1.2e-14 Score=99.97 Aligned_cols=111 Identities=21% Similarity=0.189 Sum_probs=75.5
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCC----------c--c-------cccCceeeEEEEEEEcCeEEEEEEcCCCCCchhc
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGE----------I--V-------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~----------~--~-------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 77 (153)
.+++.++|..++|||||+++++... . . ....|.......++..+..+.+.||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 4789999999999999999997531 0 0 0011333333444556678999999999888777
Q ss_pred HHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCce-EEEEEeCCCccC
Q 031796 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPN 132 (153)
Q Consensus 78 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-ii~v~~K~Dl~~ 132 (153)
....+..+|++++|+|+...-.- .....+... .. .++| +|++.||+|+..
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~-~~~~~~~~~-~~---~~~~~iIvviNK~D~~~ 132 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMP-QTREHLLLA-RQ---VGVPYIVVFLNKADMVD 132 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHH-HH---cCCCcEEEEEeCCCCCC
Confidence 77778899999999998753211 112222222 22 2455 789999999864
No 227
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.60 E-value=1.5e-14 Score=97.92 Aligned_cols=128 Identities=20% Similarity=0.301 Sum_probs=83.3
Q ss_pred hhcccCccEEEEEcCCCCCHHHHHHhHhcCC-cccc--cC--ceeeEEEEEEEcCeEEEEEEcCCC----------CCch
Q 031796 11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGE-IVTT--IP--TIGFNVETVEYKNISFTVWDVGGQ----------DKIR 75 (153)
Q Consensus 11 ~~~~~~~~~i~v~G~~~~GKSsli~~~~~~~-~~~~--~~--t~~~~~~~~~~~~~~~~i~D~~g~----------~~~~ 75 (153)
........-|+++|.++||||||+|++++++ ...+ .| |..+++..+.. .+.+.|.||- +...
T Consensus 18 ~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~---~~~lVDlPGYGyAkv~k~~~e~w~ 94 (200)
T COG0218 18 QYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD---ELRLVDLPGYGYAKVPKEVKEKWK 94 (200)
T ss_pred hCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC---cEEEEeCCCcccccCCHHHHHHHH
Confidence 3445566789999999999999999999976 2322 23 44444444433 2889999992 3334
Q ss_pred hcHHHhhc---CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCH----hHHHHHhCCC
Q 031796 76 PLWRHYFQ---NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLH 146 (153)
Q Consensus 76 ~~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~----~~~~~~~~~~ 146 (153)
.....|++ +..++++++|+... .......+.+++.. .++|+++++||+|.....+. ..+++.+++.
T Consensus 95 ~~i~~YL~~R~~L~~vvlliD~r~~--~~~~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~ 167 (200)
T COG0218 95 KLIEEYLEKRANLKGVVLLIDARHP--PKDLDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKP 167 (200)
T ss_pred HHHHHHHhhchhheEEEEEEECCCC--CcHHHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCC
Confidence 44555554 36788899998543 22323333444444 47999999999998875433 4555555443
No 228
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.59 E-value=2.3e-14 Score=105.39 Aligned_cols=86 Identities=30% Similarity=0.543 Sum_probs=73.5
Q ss_pred CceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCc----------ccHHHHHHHHHHHHcCCCC
Q 031796 47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------DRVVEARDELHRMLNEDEL 116 (153)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~ 116 (153)
||.++....+...+..+.+||++|+...+..|..++.+++++++|+|.++. ..+.+....+..++.....
T Consensus 147 ~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~ 226 (317)
T cd00066 147 KTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF 226 (317)
T ss_pred ccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc
Confidence 455666666777888999999999999999999999999999999999875 4567777788888887777
Q ss_pred CCceEEEEEeCCCccC
Q 031796 117 RDAVLLVFANKQDLPN 132 (153)
Q Consensus 117 ~~~pii~v~~K~Dl~~ 132 (153)
.+.|+++++||.|+..
T Consensus 227 ~~~pill~~NK~D~f~ 242 (317)
T cd00066 227 ANTSIILFLNKKDLFE 242 (317)
T ss_pred cCCCEEEEccChHHHH
Confidence 8899999999999764
No 229
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.58 E-value=1.5e-14 Score=109.69 Aligned_cols=117 Identities=19% Similarity=0.123 Sum_probs=75.5
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccc------cCceeeEEEEE--------------------EE------cCeE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT------IPTIGFNVETV--------------------EY------KNIS 62 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~------~~t~~~~~~~~--------------------~~------~~~~ 62 (153)
+..++|+++|..++|||||++++.+...... ..|....+..+ +. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 4678999999999999999999965422110 01222111110 00 1367
Q ss_pred EEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 63 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
+.+||+||+++|...+......+|++++|+|+++..........+..+ ... ...|+++++||+|+.+.+
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~--gi~~iIVvvNK~Dl~~~~ 150 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EII--GIKNIVIVQNKIDLVSKE 150 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHc--CCCeEEEEEEccccCCHH
Confidence 999999999999887777788899999999998642111111122211 111 124689999999997643
No 230
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.57 E-value=4.4e-14 Score=104.78 Aligned_cols=86 Identities=30% Similarity=0.531 Sum_probs=72.9
Q ss_pred CceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCc----------ccHHHHHHHHHHHHcCCCC
Q 031796 47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------DRVVEARDELHRMLNEDEL 116 (153)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~ 116 (153)
||.++....+...+..+.+||.+|+...+..|..++.++++++||+|+++. ..+.+....+..+++....
T Consensus 170 ~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~ 249 (342)
T smart00275 170 PTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWF 249 (342)
T ss_pred CccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccc
Confidence 345555556677778899999999999999999999999999999999974 3577777888888888777
Q ss_pred CCceEEEEEeCCCccC
Q 031796 117 RDAVLLVFANKQDLPN 132 (153)
Q Consensus 117 ~~~pii~v~~K~Dl~~ 132 (153)
.+.|+++++||.|+..
T Consensus 250 ~~~piil~~NK~D~~~ 265 (342)
T smart00275 250 ANTSIILFLNKIDLFE 265 (342)
T ss_pred cCCcEEEEEecHHhHH
Confidence 8999999999999864
No 231
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.57 E-value=5.5e-14 Score=93.59 Aligned_cols=108 Identities=22% Similarity=0.294 Sum_probs=67.5
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCCcc-cccCceeeE--EEEEEEcCeEEEEEEcCCCCC----------chhcHHHhhc--
Q 031796 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKNISFTVWDVGGQDK----------IRPLWRHYFQ-- 83 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~~~-~~~~t~~~~--~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~~-- 83 (153)
.|+++|++|+|||||++.+.+..+. ...++.+.. ...+... ..+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR 79 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence 4789999999999999999954433 223332222 1222222 2899999999543 2333334443
Q ss_pred -CCCEEEEEEECCCcccH--HHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 84 -NTQGLIFVVDSNDRDRV--VEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 84 -~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
+++++++++|..+..+. ..+..++.. .+.|+++++||+|+....
T Consensus 80 ~~~~~~~~v~d~~~~~~~~~~~~~~~l~~-------~~~~vi~v~nK~D~~~~~ 126 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTEIDLEMLDWLEE-------LGIPFLVVLTKADKLKKS 126 (170)
T ss_pred hhhhEEEEEEEcCcCCCHhHHHHHHHHHH-------cCCCEEEEEEchhcCChH
Confidence 46788999998765322 222333322 248999999999986443
No 232
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.57 E-value=4.7e-15 Score=96.03 Aligned_cols=116 Identities=21% Similarity=0.351 Sum_probs=93.2
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCcc-cccCceeeEEE--E--EEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEE
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~-~~~~t~~~~~~--~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 88 (153)
+.-.+|+.++|++..|||||+-.+.++.+. ....+.+++.. + +....+.+.+||..|++++..+.+.....+-++
T Consensus 17 n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaI 96 (205)
T KOG1673|consen 17 NLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAI 96 (205)
T ss_pred cceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEE
Confidence 345689999999999999999999988764 33445555542 3 334557899999999999999999888999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031796 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~ 131 (153)
+|+||.+.++++..+..|+.+.-..+ ...+| |+||||-|+.
T Consensus 97 lFmFDLt~r~TLnSi~~WY~QAr~~N-ktAiP-ilvGTKyD~f 137 (205)
T KOG1673|consen 97 LFMFDLTRRSTLNSIKEWYRQARGLN-KTAIP-ILVGTKYDLF 137 (205)
T ss_pred EEEEecCchHHHHHHHHHHHHHhccC-Cccce-EEeccchHhh
Confidence 99999999999999999999874432 23444 6789999975
No 233
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.57 E-value=7.2e-14 Score=108.89 Aligned_cols=126 Identities=19% Similarity=0.296 Sum_probs=94.8
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCcc-cccC--ceeeEEEEEEEcCeEEEEEEcCCCCCc------hhcHHHhh--cC
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKI------RPLWRHYF--QN 84 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~------~~~~~~~~--~~ 84 (153)
+..+++++|+|||||||++|++++.+.. .+-| |.......+..++..+++.|+||--+. +.....++ .+
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 4567999999999999999999998754 5544 666667778888889999999995433 22233333 35
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC----CCHhHHHHHhCCCcc
Q 031796 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSL 148 (153)
Q Consensus 85 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~----~~~~~~~~~~~~~~~ 148 (153)
.|+++.|+|+++.+.-..+.-.+.+ -+.|++++.|++|.... .+.+++.+.+|.+-.
T Consensus 82 ~D~ivnVvDAtnLeRnLyltlQLlE-------~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv 142 (653)
T COG0370 82 PDLIVNVVDATNLERNLYLTLQLLE-------LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVV 142 (653)
T ss_pred CCEEEEEcccchHHHHHHHHHHHHH-------cCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEE
Confidence 7999999999987655444433333 26889999999998764 368889999987744
No 234
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.56 E-value=9.5e-14 Score=103.99 Aligned_cols=113 Identities=18% Similarity=0.256 Sum_probs=82.8
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCcc--cccC--ceeeEEEEEEEcCeEEEEEEcCCCC----------Cchhc-HHH
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQD----------KIRPL-WRH 80 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~-~~~ 80 (153)
..+|++++|.|++|||||+|++++.... ...+ |...-...++..+.++.++||+|-. .|... ...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 4699999999999999999999998744 3333 4555556677788999999999943 22211 244
Q ss_pred hhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 81 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
.+..+|++++|+|++++ +.+....+.....+ ...++++|.||+|+.+.
T Consensus 257 aI~~a~vvllviDa~~~--~~~qD~~ia~~i~~---~g~~~vIvvNKWDl~~~ 304 (444)
T COG1160 257 AIERADVVLLVIDATEG--ISEQDLRIAGLIEE---AGRGIVIVVNKWDLVEE 304 (444)
T ss_pred HHhhcCEEEEEEECCCC--chHHHHHHHHHHHH---cCCCeEEEEEccccCCc
Confidence 57889999999999765 33333333443333 46889999999998765
No 235
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.56 E-value=9.2e-14 Score=95.73 Aligned_cols=115 Identities=17% Similarity=0.140 Sum_probs=75.0
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCccc-c----cCceeeEEEEEEEcCeEEEEEEcCCCCCchh-------c----HHHh
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVT-T----IPTIGFNVETVEYKNISFTVWDVGGQDKIRP-------L----WRHY 81 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~-~----~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~----~~~~ 81 (153)
++|+++|.+|+||||++|++++.+... . ..|...........+..+.++||||-.+... . ....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 579999999999999999999876431 1 2345555556666788999999999654321 1 1122
Q ss_pred hcCCCEEEEEEECCCcc-cHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 82 FQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 82 ~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
.+++|++++|+++.+.. .......++...+... .-.++++|.|+.|.....
T Consensus 81 ~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~--~~~~~ivv~T~~d~l~~~ 132 (196)
T cd01852 81 APGPHAFLLVVPLGRFTEEEEQAVETLQELFGEK--VLDHTIVLFTRGDDLEGG 132 (196)
T ss_pred CCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChH--hHhcEEEEEECccccCCC
Confidence 35689999999987622 1223333444333321 124688888999876543
No 236
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.55 E-value=4.9e-14 Score=106.98 Aligned_cols=118 Identities=19% Similarity=0.152 Sum_probs=73.5
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCcc--cc----cCceeeEEEEEEE--------------c------------Ce
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV--TT----IPTIGFNVETVEY--------------K------------NI 61 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~--~~----~~t~~~~~~~~~~--------------~------------~~ 61 (153)
.+..++++++|..++|||||+.++.+.... .. ..|....+..... . ..
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 356799999999999999999998653111 11 1122222111010 0 25
Q ss_pred EEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 62 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
.+.+|||||+++|..........+|++++|+|+++...-......+... ... ...|+++|+||+|+.+..
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l-~~~--~i~~iiVVlNK~Dl~~~~ 155 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMAL-DII--GIKNIVIVQNKIDLVSKE 155 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc--CCCcEEEEEEeeccccch
Confidence 7999999999888666565667789999999998642111111111111 111 124689999999997643
No 237
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.55 E-value=1.3e-13 Score=104.22 Aligned_cols=115 Identities=21% Similarity=0.181 Sum_probs=76.6
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCC-------c-----cc-------ccCceeeEEEEEEEcCeEEEEEEcCCCCCc
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGE-------I-----VT-------TIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~-------~-----~~-------~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (153)
.++.++++++|..++|||||++++++.. . .. ...|.......+......+.+|||||+++|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 4677999999999999999999997320 0 00 112333333444445678999999999988
Q ss_pred hhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCce-EEEEEeCCCccCC
Q 031796 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNA 133 (153)
Q Consensus 75 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-ii~v~~K~Dl~~~ 133 (153)
..........+|++++|+|+.+..... ....+..+ .. ..+| +|+++||+|+.+.
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~-~~---~gi~~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQ-TREHILLA-RQ---VGVPYIVVFLNKCDMVDD 143 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHH-HH---cCCCEEEEEEEecccCCH
Confidence 766666667889999999997632211 11222222 22 2455 4578999998753
No 238
>PLN03126 Elongation factor Tu; Provisional
Probab=99.55 E-value=8.3e-14 Score=107.17 Aligned_cols=115 Identities=22% Similarity=0.204 Sum_probs=79.5
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCC------cc---------ccc----CceeeEEEEEEEcCeEEEEEEcCCCCCc
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGE------IV---------TTI----PTIGFNVETVEYKNISFTVWDVGGQDKI 74 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~------~~---------~~~----~t~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (153)
.+..++++++|..++|||||++++++.. .. ..+ .|.......+...+..+.++|+||+++|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 4667999999999999999999998521 00 001 1233333445566789999999999998
Q ss_pred hhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCce-EEEEEeCCCccCC
Q 031796 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNA 133 (153)
Q Consensus 75 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-ii~v~~K~Dl~~~ 133 (153)
.......+..+|++++|+|+.+...- .....+... .. .++| ++++.||+|+.+.
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~~-qt~e~~~~~-~~---~gi~~iIvvvNK~Dl~~~ 212 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPMP-QTKEHILLA-KQ---VGVPNMVVFLNKQDQVDD 212 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHH-HH---cCCCeEEEEEecccccCH
Confidence 77767777899999999998754222 122222222 22 2566 7889999999753
No 239
>PRK12736 elongation factor Tu; Reviewed
Probab=99.55 E-value=4.7e-14 Score=106.61 Aligned_cols=115 Identities=22% Similarity=0.178 Sum_probs=77.5
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCc------------c-------cccCceeeEEEEEEEcCeEEEEEEcCCCCCc
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEI------------V-------TTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~------------~-------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (153)
.+..++++++|..++|||||++++++... . ....|.......+......+.++||||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 57789999999999999999999976310 0 0011333333334445678999999999988
Q ss_pred hhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCce-EEEEEeCCCccCC
Q 031796 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNA 133 (153)
Q Consensus 75 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-ii~v~~K~Dl~~~ 133 (153)
..........+|++++|+|+.+...-. ....+... .. .++| +|+++||+|+.+.
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~-~~---~g~~~~IvviNK~D~~~~ 143 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLA-RQ---VGVPYLVVFLNKVDLVDD 143 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHH-HH---cCCCEEEEEEEecCCcch
Confidence 666666678899999999987532111 11222222 22 2466 6789999999743
No 240
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.55 E-value=3.7e-14 Score=91.96 Aligned_cols=97 Identities=22% Similarity=0.246 Sum_probs=65.4
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCC----CCchhcHHHhhcCCCEEEEEEE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ----DKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~----~~~~~~~~~~~~~~~~~i~v~d 93 (153)
.|++++|+.|+|||||++++.+.... +..|-.+++. =.++||||. ..+.........++|.+++|.|
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~-~~KTq~i~~~--------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~d 72 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIR-YKKTQAIEYY--------DNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQD 72 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCC-cCccceeEec--------ccEEECChhheeCHHHHHHHHHHHhhCCEEEEEec
Confidence 48999999999999999999876542 2222222221 134799994 2334444555678999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031796 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~ 131 (153)
++++.+.- ...+... -+.|+|-|.||+|+.
T Consensus 73 at~~~~~~--pP~fa~~------f~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 73 ATEPRSVF--PPGFASM------FNKPVIGVITKIDLP 102 (143)
T ss_pred CCCCCccC--Cchhhcc------cCCCEEEEEECccCc
Confidence 98864321 1112222 257899999999999
No 241
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.55 E-value=1.3e-13 Score=106.35 Aligned_cols=122 Identities=18% Similarity=0.139 Sum_probs=80.6
Q ss_pred HHHHhhhcccCccEEEEEcCCCCCHHHHHHhHhcCCc--cc------------c----------------------cCce
Q 031796 6 TKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEI--VT------------T----------------------IPTI 49 (153)
Q Consensus 6 ~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~~~~~~~--~~------------~----------------------~~t~ 49 (153)
.......-.+..++++++|..++|||||+.+++...- .. . ..|+
T Consensus 16 ~~~~~~~~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTi 95 (474)
T PRK05124 16 EAYLHAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITI 95 (474)
T ss_pred HHHHhhccccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCe
Confidence 3344444457789999999999999999999974320 00 0 0123
Q ss_pred eeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcccHHH-HHHHHHHHHcCCCCCCceEEEEEeCC
Q 031796 50 GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVE-ARDELHRMLNEDELRDAVLLVFANKQ 128 (153)
Q Consensus 50 ~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~pii~v~~K~ 128 (153)
......+...+..+.++||||++.|.......+..+|++++|+|+.+.-.-.. ....+...+. ..|+++++||+
T Consensus 96 d~~~~~~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg-----~~~iIvvvNKi 170 (474)
T PRK05124 96 DVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLG-----IKHLVVAVNKM 170 (474)
T ss_pred EeeEEEeccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhC-----CCceEEEEEee
Confidence 33344455667899999999999886555555789999999999865321111 1111122211 24789999999
Q ss_pred CccC
Q 031796 129 DLPN 132 (153)
Q Consensus 129 Dl~~ 132 (153)
|+.+
T Consensus 171 D~~~ 174 (474)
T PRK05124 171 DLVD 174 (474)
T ss_pred cccc
Confidence 9874
No 242
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.53 E-value=1.6e-13 Score=96.41 Aligned_cols=111 Identities=25% Similarity=0.263 Sum_probs=71.7
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCCccccc-----------------Cc-------eeeE-----------------EEEEE
Q 031796 19 RILMVGLDAAGKTTILYKLKLGEIVTTI-----------------PT-------IGFN-----------------VETVE 57 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~~~~~~-----------------~t-------~~~~-----------------~~~~~ 57 (153)
|++++|+.++|||||++++..+.+.... .| .++. .....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 5899999999999999999865442100 00 0000 01223
Q ss_pred EcCeEEEEEEcCCCCCchhcHHHhhc--CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 58 YKNISFTVWDVGGQDKIRPLWRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 58 ~~~~~~~i~D~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
..+..+.+.|+||++.|.......+. .+|++++|+|+..... .....+...+.. .++|+++|.||+|+.+..
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~--~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~ 154 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII--GMTKEHLGLALA---LNIPVFVVVTKIDLAPAN 154 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc--HHHHHHHHHHHH---cCCCEEEEEECccccCHH
Confidence 34568999999999988655444443 6899999999865422 222222222222 357899999999986543
No 243
>CHL00071 tufA elongation factor Tu
Probab=99.53 E-value=8.7e-14 Score=105.66 Aligned_cols=115 Identities=20% Similarity=0.204 Sum_probs=77.8
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCcc---------------cc--cC--ceeeEEEEEEEcCeEEEEEEcCCCCCc
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV---------------TT--IP--TIGFNVETVEYKNISFTVWDVGGQDKI 74 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~---------------~~--~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (153)
.+..++++++|..++|||||++++++..-. .. .. |.......+...+..+.+.||||+.+|
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 467799999999999999999999864110 00 01 222222334445678899999999888
Q ss_pred hhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCce-EEEEEeCCCccCC
Q 031796 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNA 133 (153)
Q Consensus 75 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-ii~v~~K~Dl~~~ 133 (153)
.......+..+|++++|+|+.+.-. ......+.. +.. .++| +|++.||+|+.+.
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~-~~~---~g~~~iIvvvNK~D~~~~ 143 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPM-PQTKEHILL-AKQ---VGVPNIVVFLNKEDQVDD 143 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHH-HHH---cCCCEEEEEEEccCCCCH
Confidence 6666667789999999999875321 112222222 222 2567 7789999999753
No 244
>PRK12735 elongation factor Tu; Reviewed
Probab=99.53 E-value=1.9e-13 Score=103.36 Aligned_cols=114 Identities=21% Similarity=0.181 Sum_probs=75.8
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcC-------Ccc-----c-------ccCceeeEEEEEEEcCeEEEEEEcCCCCCch
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLG-------EIV-----T-------TIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~-------~~~-----~-------~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (153)
+..+++.++|..++|||||++++++. ++. . ...|.......+...+..+.++||||+++|.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 66799999999999999999999862 110 0 0112333233344456789999999998886
Q ss_pred hcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEE-EEEeCCCccCC
Q 031796 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL-VFANKQDLPNA 133 (153)
Q Consensus 76 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-~v~~K~Dl~~~ 133 (153)
......+..+|++++|+|+.+...- .....+... .. .++|.+ +++||+|+.+.
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~~-qt~e~l~~~-~~---~gi~~iivvvNK~Dl~~~ 143 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPMP-QTREHILLA-RQ---VGVPYIVVFLNKCDMVDD 143 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCch-hHHHHHHHH-HH---cCCCeEEEEEEecCCcch
Confidence 6666667889999999998763221 112222222 21 246754 67999999743
No 245
>PRK12739 elongation factor G; Reviewed
Probab=99.53 E-value=2.1e-13 Score=109.57 Aligned_cols=126 Identities=21% Similarity=0.177 Sum_probs=89.5
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcC-----Cc---c-------------cccCceeeEEEEEEEcCeEEEEEEcCCCCC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLG-----EI---V-------------TTIPTIGFNVETVEYKNISFTVWDVGGQDK 73 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~-----~~---~-------------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~ 73 (153)
.+.++|.++|..++|||||+++++.. +. . ....|+......+.+.+..+.++||||+.+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 45689999999999999999999642 11 0 011245555567778899999999999988
Q ss_pred chhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC---CHhHHHHHhCC
Q 031796 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGL 145 (153)
Q Consensus 74 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~---~~~~~~~~~~~ 145 (153)
+...+...++.+|++++|+|+.+...... ...+... .. .+.|+++++||+|+.... ..+++.+.++.
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~-~~---~~~p~iv~iNK~D~~~~~~~~~~~~i~~~l~~ 155 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQA-DK---YGVPRIVFVNKMDRIGADFFRSVEQIKDRLGA 155 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHH-HH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCC
Confidence 87778888999999999999876533221 1222222 22 358899999999998653 23445555554
No 246
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.52 E-value=2.1e-13 Score=109.93 Aligned_cols=113 Identities=21% Similarity=0.109 Sum_probs=78.5
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcC---------------Cccc----ccCceeeEEE----EEEEcCeEEEEEEcCCC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLG---------------EIVT----TIPTIGFNVE----TVEYKNISFTVWDVGGQ 71 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~---------------~~~~----~~~t~~~~~~----~~~~~~~~~~i~D~~g~ 71 (153)
.+.+||+++|+.++|||||+++++.. .+.. ...|+..... ..++.+..+.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 45689999999999999999999742 1111 0113322222 24556789999999999
Q ss_pred CCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 72 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
.+|.......++.+|++++|+|+.+.-.... ...+..... .+.|+++++||+|...
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~~----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQALK----ENVKPVLFINKVDRLI 152 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHHH----cCCCEEEEEEChhccc
Confidence 9998888888999999999999876322211 122222222 3567889999999864
No 247
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.52 E-value=1.3e-13 Score=98.83 Aligned_cols=127 Identities=28% Similarity=0.387 Sum_probs=89.5
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcc-cc--cCceeeEEEEEEEcCe-EEEEEEcCCCCCc-------hhcHHHhhcCCC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKNI-SFTVWDVGGQDKI-------RPLWRHYFQNTQ 86 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~-~~--~~t~~~~~~~~~~~~~-~~~i~D~~g~~~~-------~~~~~~~~~~~~ 86 (153)
-.+-++|-|++|||||++++...+.. .. ..|......++.+.+. .+.+-|+||--+- .......+++|+
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhc
Confidence 45789999999999999999887632 22 2344455556666554 4999999995332 233455678999
Q ss_pred EEEEEEECCCc---ccHHHHHHHHHHH-HcCCCCCCceEEEEEeCCCccCCCCH--hHHHHHhC
Q 031796 87 GLIFVVDSNDR---DRVVEARDELHRM-LNEDELRDAVLLVFANKQDLPNAMNA--AEITDKLG 144 (153)
Q Consensus 87 ~~i~v~d~~~~---~s~~~~~~~~~~~-~~~~~~~~~pii~v~~K~Dl~~~~~~--~~~~~~~~ 144 (153)
..+||+|++.. ..++.++..+.++ +.+....+.|.++|+||+|+++++.. .++++.+.
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq 340 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQ 340 (366)
T ss_pred eEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcC
Confidence 99999999988 6666665544443 23345578899999999999755432 66777665
No 248
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.52 E-value=1.4e-13 Score=109.60 Aligned_cols=124 Identities=17% Similarity=0.115 Sum_probs=82.8
Q ss_pred HHHHHhhhcccCccEEEEEcCCCCCHHHHHHhHhcCCc--cc------------c----------------------cCc
Q 031796 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEI--VT------------T----------------------IPT 48 (153)
Q Consensus 5 ~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~~~~~~~--~~------------~----------------------~~t 48 (153)
+.+.+.....+..++++++|.+++|||||+++++...- .. . ..|
T Consensus 12 ~~~~~~~~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~T 91 (632)
T PRK05506 12 ILAYLAQHERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGIT 91 (632)
T ss_pred HHHHHhhccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcC
Confidence 45666666778889999999999999999999975321 00 0 012
Q ss_pred eeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCC
Q 031796 49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128 (153)
Q Consensus 49 ~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~ 128 (153)
.......+...+.++.++||||++.|.......+..+|++++|+|+.+...-.... .+. ++... ...++++++||+
T Consensus 92 id~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e-~~~-~~~~~--~~~~iivvvNK~ 167 (632)
T PRK05506 92 IDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRR-HSF-IASLL--GIRHVVLAVNKM 167 (632)
T ss_pred ceeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHH-HHH-HHHHh--CCCeEEEEEEec
Confidence 22333445556778999999999887655555678999999999986542111111 111 11111 135789999999
Q ss_pred CccC
Q 031796 129 DLPN 132 (153)
Q Consensus 129 Dl~~ 132 (153)
|+.+
T Consensus 168 D~~~ 171 (632)
T PRK05506 168 DLVD 171 (632)
T ss_pred cccc
Confidence 9974
No 249
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.51 E-value=4.3e-13 Score=106.09 Aligned_cols=110 Identities=20% Similarity=0.111 Sum_probs=74.0
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCC---cccc---cCceeeEEEEEEE-cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEE
Q 031796 19 RILMVGLDAAGKTTILYKLKLGE---IVTT---IPTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~---~~~~---~~t~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 91 (153)
-|.++|..++|||||++++.+.. +... ..|+...+..+.. .+..+.+||+||+++|.......+..+|++++|
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLV 81 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV 81 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEE
Confidence 47899999999999999998643 2211 2344444444433 346789999999999876666778899999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCce-EEEEEeCCCccCC
Q 031796 92 VDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNA 133 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-ii~v~~K~Dl~~~ 133 (153)
+|+++.-. ........++.. .++| +++|+||+|+.++
T Consensus 82 Vda~eg~~--~qT~ehl~il~~---lgi~~iIVVlNKiDlv~~ 119 (614)
T PRK10512 82 VACDDGVM--AQTREHLAILQL---TGNPMLTVALTKADRVDE 119 (614)
T ss_pred EECCCCCc--HHHHHHHHHHHH---cCCCeEEEEEECCccCCH
Confidence 99876311 111111122222 1344 6899999999764
No 250
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.49 E-value=3.5e-16 Score=104.00 Aligned_cols=117 Identities=18% Similarity=0.321 Sum_probs=96.5
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEEE--EEEEc---CeEEEEEEcCCCCCchhcHHHhhcCCCEEEE
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVEYK---NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~~--~~~~~---~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 90 (153)
-+|++|+|..|+|||++++++..+.|... ..|++..+. ...+. -+++++||+.||+++..+...+++.+++..+
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~i 104 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFI 104 (229)
T ss_pred hhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEE
Confidence 47899999999999999999998877643 456665542 23332 2689999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCC---CCCCceEEEEEeCCCccCC
Q 031796 91 VVDSNDRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~pii~v~~K~Dl~~~ 133 (153)
|||+++..+|+....|..+..... .....|+|+..||||....
T Consensus 105 Vfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~ 150 (229)
T KOG4423|consen 105 VFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKS 150 (229)
T ss_pred EEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChH
Confidence 999999999999999888875544 3457899999999998653
No 251
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.49 E-value=8.2e-14 Score=99.56 Aligned_cols=116 Identities=18% Similarity=0.189 Sum_probs=81.5
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCcccc----cCceeeEEEEEEEcCeEEEEEEcCCCCCc------------hhc
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNISFTVWDVGGQDKI------------RPL 77 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~g~~~~------------~~~ 77 (153)
..+.+.++++|.+++|||||.|.+.+.+.... ..|+......++.....+.++||||...- .+.
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 36779999999999999999999999986532 23455556677778899999999994321 112
Q ss_pred HHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 78 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
....+.++|++++|+|+++..... .......+..+ .++|=++|.||.|...+
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l--~p~vl~~l~~y--s~ips~lvmnkid~~k~ 200 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPL--HPRVLHMLEEY--SKIPSILVMNKIDKLKQ 200 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCcc--ChHHHHHHHHH--hcCCceeeccchhcchh
Confidence 234567899999999998633221 11112222222 36889999999998754
No 252
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.49 E-value=2.6e-13 Score=102.92 Aligned_cols=111 Identities=18% Similarity=0.123 Sum_probs=74.2
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCc--cc------------c----------------------cCceeeEEEEEEEcCe
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEI--VT------------T----------------------IPTIGFNVETVEYKNI 61 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~--~~------------~----------------------~~t~~~~~~~~~~~~~ 61 (153)
++++++|..++|||||+.+++...- .. . ..|.......+...+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 5899999999999999999963210 00 0 0123344455566778
Q ss_pred EEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 62 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
++.++||||+++|.......+..+|++++|+|+.+...-..... +. +.... ...++++++||+|+.+
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~-~~-~~~~~--~~~~iivviNK~D~~~ 147 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRH-SY-IASLL--GIRHVVLAVNKMDLVD 147 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHH-HH-HHHHc--CCCcEEEEEEeccccc
Confidence 99999999999886666667889999999999865422111111 11 11111 1246899999999875
No 253
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.49 E-value=2.9e-12 Score=93.02 Aligned_cols=115 Identities=12% Similarity=0.147 Sum_probs=71.7
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcc--cccC--ceeeEEEEEEEcCeEEEEEEcCCCCCchhcH---HHhhc----
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLW---RHYFQ---- 83 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~---~~~~~---- 83 (153)
.+.++|+++|.+|+||||++|++++.+.. .... +...........+.++.++||||..+..... ...++
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~ 115 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLL 115 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhh
Confidence 56789999999999999999999987642 1111 1222223334577899999999976542221 11122
Q ss_pred --CCCEEEEEEECC--CcccH-HHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031796 84 --NTQGLIFVVDSN--DRDRV-VEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 84 --~~~~~i~v~d~~--~~~s~-~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~ 131 (153)
..|++++|..++ ..... ..+...+...+....+ .+.|++.|+.|..
T Consensus 116 ~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw--~~~IVVfTh~d~~ 166 (313)
T TIGR00991 116 GKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIW--RKSLVVLTHAQFS 166 (313)
T ss_pred cCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhh--ccEEEEEECCccC
Confidence 589999996543 22212 2333344444333222 3589999999965
No 254
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.49 E-value=2.6e-12 Score=91.48 Aligned_cols=117 Identities=10% Similarity=0.098 Sum_probs=75.0
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCcccc----cCceeeEEEEEEEcCeEEEEEEcCCCCCchh---c-------HH
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNISFTVWDVGGQDKIRP---L-------WR 79 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~-------~~ 79 (153)
....++|+++|.+|+|||||+|++++...... ..|...........+.++.++||||-.+... . ..
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~ 107 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIK 107 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHH
Confidence 36679999999999999999999999764321 2244444445556778999999999654421 1 12
Q ss_pred Hhhc--CCCEEEEEEECCCcc-cHH--HHHHHHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 80 HYFQ--NTQGLIFVVDSNDRD-RVV--EARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 80 ~~~~--~~~~~i~v~d~~~~~-s~~--~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
.++. ..|++++|..++... +.. .+...+...+.... -.++++|.||+|...
T Consensus 108 ~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i--~~~~ivV~T~~d~~~ 163 (249)
T cd01853 108 RYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSI--WRNAIVVLTHAASSP 163 (249)
T ss_pred HHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhh--HhCEEEEEeCCccCC
Confidence 2332 578888887654321 222 34444444433222 145999999999853
No 255
>PRK00049 elongation factor Tu; Reviewed
Probab=99.48 E-value=3.6e-13 Score=101.89 Aligned_cols=114 Identities=19% Similarity=0.172 Sum_probs=77.0
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCcc-------------------cccCceeeEEEEEEEcCeEEEEEEcCCCCCc
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-------------------TTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~-------------------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (153)
.+..++++++|..++|||||++++++.... ....|.......+...+..+.+.||||+.+|
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence 367799999999999999999999863100 0011333333344445678999999999888
Q ss_pred hhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEE-EEEeCCCccC
Q 031796 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL-VFANKQDLPN 132 (153)
Q Consensus 75 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-~v~~K~Dl~~ 132 (153)
.......+..+|++++|+|+.+...- .....+. .+.. .++|.+ ++.||+|+.+
T Consensus 89 ~~~~~~~~~~aD~~llVVDa~~g~~~-qt~~~~~-~~~~---~g~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 89 VKNMITGAAQMDGAILVVSAADGPMP-QTREHIL-LARQ---VGVPYIVVFLNKCDMVD 142 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCch-HHHHHHH-HHHH---cCCCEEEEEEeecCCcc
Confidence 66666677899999999998764221 1122222 2222 257765 6899999975
No 256
>PLN03127 Elongation factor Tu; Provisional
Probab=99.48 E-value=9.5e-13 Score=100.78 Aligned_cols=114 Identities=20% Similarity=0.142 Sum_probs=76.7
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcC------Cc------cc-------ccCceeeEEEEEEEcCeEEEEEEcCCCCCc
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLG------EI------VT-------TIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~------~~------~~-------~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (153)
.+..++|+++|..++|||||++++.+. .. .+ ...|.......++..+..+.+.||||+.+|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 467799999999999999999999632 10 00 011333333445556678999999999988
Q ss_pred hhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCce-EEEEEeCCCccC
Q 031796 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPN 132 (153)
Q Consensus 75 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-ii~v~~K~Dl~~ 132 (153)
-.....-...+|++++|+|+.+...- ........+.. .++| +|++.||+|+.+
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~~--qt~e~l~~~~~---~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPMP--QTKEHILLARQ---VGVPSLVVFLNKVDVVD 191 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCch--hHHHHHHHHHH---cCCCeEEEEEEeeccCC
Confidence 66655566789999999998754211 11112222222 3577 578899999975
No 257
>PRK00007 elongation factor G; Reviewed
Probab=99.46 E-value=1.8e-12 Score=104.26 Aligned_cols=127 Identities=20% Similarity=0.164 Sum_probs=87.4
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhc--CC---c---c-------------cccCceeeEEEEEEEcCeEEEEEEcCCCC
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKL--GE---I---V-------------TTIPTIGFNVETVEYKNISFTVWDVGGQD 72 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~--~~---~---~-------------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~ 72 (153)
..+-++|.++|..++|||||+++++. +. . . ....|+......+.+.+..+.+.||||+.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 34567999999999999999999963 11 0 0 01124444456677788999999999998
Q ss_pred CchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCC---HhHHHHHhCC
Q 031796 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGL 145 (153)
Q Consensus 73 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~---~~~~~~~~~~ 145 (153)
++.......++.+|++++|+|+...-.... ...+..... .++|++++.||+|+..+.. .+++.+.++.
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~----~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~ 157 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADK----YKVPRIAFVNKMDRTGADFYRVVEQIKDRLGA 157 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCC
Confidence 886667777899999999999875432222 222222222 3578899999999986542 3444445444
No 258
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.45 E-value=1.6e-12 Score=90.63 Aligned_cols=119 Identities=16% Similarity=0.158 Sum_probs=72.7
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcccc-----cCceeeEEEEEEEcCeEEEEEEcCCCCCch----hc---H----HHh
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEYKNISFTVWDVGGQDKIR----PL---W----RHY 81 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~~-----~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~----~~---~----~~~ 81 (153)
++|+++|.+|+||||++|.+++...... ..|...........+..+.++||||-.+.. .. . ...
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 5899999999999999999998874322 235556666668889999999999943211 11 1 122
Q ss_pred hcCCCEEEEEEECCCcc-cHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhH
Q 031796 82 FQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE 138 (153)
Q Consensus 82 ~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~ 138 (153)
.+..|++++|+...... .-.....++..++....+. -+++|.|..|.......++
T Consensus 81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~k--~~ivvfT~~d~~~~~~~~~ 136 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIWK--HTIVVFTHADELEDDSLED 136 (212)
T ss_dssp TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGGG--GEEEEEEEGGGGTTTTHHH
T ss_pred cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHHh--HhhHHhhhccccccccHHH
Confidence 34689999999987332 1223344555555433322 3777778887666554333
No 259
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.43 E-value=5.3e-13 Score=94.25 Aligned_cols=116 Identities=21% Similarity=0.423 Sum_probs=79.7
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCccccc---CceeeEE-EEEEEcCeEEEEEEcCCCCC-------chhcHHHhh
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---PTIGFNV-ETVEYKNISFTVWDVGGQDK-------IRPLWRHYF 82 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~---~t~~~~~-~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~ 82 (153)
.+.+.+++++|.+|+||||++|+++++...+.. .+..+.. ....+....+.+||+||-++ +++....++
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l 115 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYL 115 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHh
Confidence 578899999999999999999999975533211 1222211 12233446899999999654 677788889
Q ss_pred cCCCEEEEEEECCCcccHHHH-HHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 83 QNTQGLIFVVDSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 83 ~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
.+.|.++.+++..++. ... ...+..+.... .+.+++++.|.+|....
T Consensus 116 ~~~DLvL~l~~~~dra--L~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p 163 (296)
T COG3596 116 PKLDLVLWLIKADDRA--LGTDEDFLRDVIILG--LDKRVLFVVTQADRAEP 163 (296)
T ss_pred hhccEEEEeccCCCcc--ccCCHHHHHHHHHhc--cCceeEEEEehhhhhcc
Confidence 9999999999997653 222 22333333221 24789999999997543
No 260
>PRK12740 elongation factor G; Reviewed
Probab=99.42 E-value=3e-12 Score=102.78 Aligned_cols=118 Identities=21% Similarity=0.187 Sum_probs=84.2
Q ss_pred EcCCCCCHHHHHHhHhcCCc--------------c-------cccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHh
Q 031796 23 VGLDAAGKTTILYKLKLGEI--------------V-------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHY 81 (153)
Q Consensus 23 ~G~~~~GKSsli~~~~~~~~--------------~-------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 81 (153)
+|..++|||||+++++...- . ....|.......+.+.+..+.+|||||+.++...+...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 59999999999999953210 0 01224555556778889999999999999887777888
Q ss_pred hcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC---CHhHHHHHhCC
Q 031796 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGL 145 (153)
Q Consensus 82 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~---~~~~~~~~~~~ 145 (153)
++.+|++++|+|+++....... ..+..... .++|+++|+||+|+.... ..+++.+.++.
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~----~~~p~iiv~NK~D~~~~~~~~~~~~l~~~l~~ 142 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK----YGVPRIIFVNKMDRAGADFFRVLAQLQEKLGA 142 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHCC
Confidence 9999999999999876554433 22232222 368999999999988654 23445555554
No 261
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.42 E-value=1e-12 Score=94.65 Aligned_cols=82 Identities=22% Similarity=0.247 Sum_probs=64.8
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcc-cc--cCceeeEEEEEEEcCeEEEEEEcCCCCCc-------hhcHHHhhcCCCE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKNISFTVWDVGGQDKI-------RPLWRHYFQNTQG 87 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~-~~--~~t~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~~~~ 87 (153)
-+++++|.+++|||||++.+++.+.. .. ..|.......+.+++..+++.|+||--.- ........++||.
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADl 143 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADL 143 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCE
Confidence 57999999999999999999997643 22 34666777889999999999999984221 2334567899999
Q ss_pred EEEEEECCCccc
Q 031796 88 LIFVVDSNDRDR 99 (153)
Q Consensus 88 ~i~v~d~~~~~s 99 (153)
+++|+|.....+
T Consensus 144 IiiVld~~~~~~ 155 (365)
T COG1163 144 IIIVLDVFEDPH 155 (365)
T ss_pred EEEEEecCCChh
Confidence 999999986544
No 262
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=3.3e-12 Score=96.32 Aligned_cols=119 Identities=19% Similarity=0.281 Sum_probs=86.3
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcc--cccC--ceeeEEEEEEEcCeEEEEEEcCCCCC-chhc--------HHHh
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDK-IRPL--------WRHY 81 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~--------~~~~ 81 (153)
+..++|+++|++++|||||+|.+.+.... ++.| |.+.-...++.+++++.+.||+|-.+ -... -..-
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 56699999999999999999999988744 4433 55555677889999999999999544 1111 1234
Q ss_pred hcCCCEEEEEEEC--CCcccHHHHHHHHHHHHcC-----CCCCCceEEEEEeCCCccCC
Q 031796 82 FQNTQGLIFVVDS--NDRDRVVEARDELHRMLNE-----DELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 82 ~~~~~~~i~v~d~--~~~~s~~~~~~~~~~~~~~-----~~~~~~pii~v~~K~Dl~~~ 133 (153)
++++|++++|+|+ ++.++-..+...+...... +.+..-|++++.||.|+...
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 6789999999998 4444445555555554222 23345789999999999765
No 263
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.39 E-value=3.2e-12 Score=97.98 Aligned_cols=113 Identities=18% Similarity=0.155 Sum_probs=79.4
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCC----------c-----------------cc-------ccCceeeEEEEEEEc
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGE----------I-----------------VT-------TIPTIGFNVETVEYK 59 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~----------~-----------------~~-------~~~t~~~~~~~~~~~ 59 (153)
.+..++++++|..++|||||+.+++... + .+ ...|+......+...
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 3667999999999999999998886311 0 00 011344444556667
Q ss_pred CeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcccHH-------HHHHHHHHHHcCCCCCCc-eEEEEEeCCCcc
Q 031796 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVV-------EARDELHRMLNEDELRDA-VLLVFANKQDLP 131 (153)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~~-pii~v~~K~Dl~ 131 (153)
+..+.++|+||+++|.......+..+|++++|+|+++ ..|+ .....+... .. ..+ ++|+++||+|+.
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~-~~---~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLA-FT---LGVKQMICCCNKMDAT 158 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHH-HH---cCCCcEEEEEEcccCC
Confidence 7899999999999998888888999999999999986 2222 222222221 11 245 578899999986
No 264
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.37 E-value=1.1e-11 Score=101.56 Aligned_cols=120 Identities=18% Similarity=0.140 Sum_probs=82.0
Q ss_pred HHHHHhhhcccCccEEEEEcCCCCCHHHHHHhHhcCCc------------ccc-------cCceeeEEEEEEE-------
Q 031796 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEI------------VTT-------IPTIGFNVETVEY------- 58 (153)
Q Consensus 5 ~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~~~~~~~------------~~~-------~~t~~~~~~~~~~------- 58 (153)
+.++++. ..+.++|+++|..++|||||+.+++...- ... ..|.......+.+
T Consensus 9 ~~~~~~~--~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~ 86 (843)
T PLN00116 9 LRRIMDK--KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESL 86 (843)
T ss_pred HHHHhhC--ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccc
Confidence 3344443 35668999999999999999999974321 000 0122211222222
Q ss_pred ---------cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCC
Q 031796 59 ---------KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD 129 (153)
Q Consensus 59 ---------~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~D 129 (153)
.+..++++||||+.+|.......++.+|++++|+|+.+.-.... ...|..... .++|+++++||+|
T Consensus 87 ~~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~----~~~p~i~~iNK~D 161 (843)
T PLN00116 87 KDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMD 161 (843)
T ss_pred cccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHH----CCCCEEEEEECCc
Confidence 25788999999999998888888899999999999876533222 223333333 3689999999999
Q ss_pred cc
Q 031796 130 LP 131 (153)
Q Consensus 130 l~ 131 (153)
..
T Consensus 162 ~~ 163 (843)
T PLN00116 162 RC 163 (843)
T ss_pred cc
Confidence 87
No 265
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.36 E-value=9e-12 Score=95.51 Aligned_cols=114 Identities=20% Similarity=0.173 Sum_probs=78.1
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCC--c-------------------------cc-------ccCceeeEEEEEEEc
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGE--I-------------------------VT-------TIPTIGFNVETVEYK 59 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~--~-------------------------~~-------~~~t~~~~~~~~~~~ 59 (153)
.+..++++++|..++|||||+.+++... . .. ...|.......+...
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 4667999999999999999999886410 0 00 011344444556667
Q ss_pred CeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcc---cH---HHHHHHHHHHHcCCCCCCce-EEEEEeCCCcc
Q 031796 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RV---VEARDELHRMLNEDELRDAV-LLVFANKQDLP 131 (153)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~p-ii~v~~K~Dl~ 131 (153)
+..+.++|+||+.+|.......+..+|++++|+|+++.. .+ ......+... .. ..+| +|++.||+|..
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~-~~---~gi~~iiv~vNKmD~~ 158 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLA-FT---LGVKQMIVCINKMDDK 158 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHH-HH---cCCCeEEEEEEccccc
Confidence 789999999999999777777789999999999987532 01 1111222222 21 2444 78999999953
No 266
>PTZ00416 elongation factor 2; Provisional
Probab=99.36 E-value=8.9e-12 Score=101.88 Aligned_cols=112 Identities=20% Similarity=0.157 Sum_probs=77.9
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCc------------ccc---c----CceeeEEEEEEEc----------CeEEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEI------------VTT---I----PTIGFNVETVEYK----------NISFTV 65 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~------------~~~---~----~t~~~~~~~~~~~----------~~~~~i 65 (153)
.+..+|+++|..++|||||+++++...- ... + .|+......+.+. +..+.+
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 5567999999999999999999975321 000 0 0111111222332 567999
Q ss_pred EEcCCCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031796 66 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 66 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~ 131 (153)
.||||+.+|.......++.+|++++|+|+.+.-... ....|..... .++|++++.||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ-TETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHHH----cCCCEEEEEEChhhh
Confidence 999999999877888899999999999987643222 2233344433 358999999999987
No 267
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.35 E-value=9.9e-12 Score=91.38 Aligned_cols=87 Identities=29% Similarity=0.529 Sum_probs=74.9
Q ss_pred CceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCccc----------HHHHHHHHHHHHcCCCC
Q 031796 47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR----------VVEARDELHRMLNEDEL 116 (153)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s----------~~~~~~~~~~~~~~~~~ 116 (153)
+|+++....++..+.++.++|.+||..-+..|..++.++++++||+++++.+. ..+....+..+.++...
T Consensus 181 ~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F 260 (354)
T KOG0082|consen 181 PTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWF 260 (354)
T ss_pred CcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCccc
Confidence 57888888899999999999999999999999999999999999999886543 34445667778888888
Q ss_pred CCceEEEEEeCCCccCC
Q 031796 117 RDAVLLVFANKQDLPNA 133 (153)
Q Consensus 117 ~~~pii~v~~K~Dl~~~ 133 (153)
.+.++|+++||.|+..+
T Consensus 261 ~~tsiiLFLNK~DLFeE 277 (354)
T KOG0082|consen 261 ANTSIILFLNKKDLFEE 277 (354)
T ss_pred ccCcEEEEeecHHHHHH
Confidence 89999999999999753
No 268
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.33 E-value=1.6e-11 Score=89.13 Aligned_cols=122 Identities=27% Similarity=0.307 Sum_probs=80.8
Q ss_pred EEEEcCCCCCHHHHHHhHhcCCcc-ccc--CceeeEEEEEEE-cCeEEEEEEcCCCCCc-------hhcHHHhhcCCCEE
Q 031796 20 ILMVGLDAAGKTTILYKLKLGEIV-TTI--PTIGFNVETVEY-KNISFTVWDVGGQDKI-------RPLWRHYFQNTQGL 88 (153)
Q Consensus 20 i~v~G~~~~GKSsli~~~~~~~~~-~~~--~t~~~~~~~~~~-~~~~~~i~D~~g~~~~-------~~~~~~~~~~~~~~ 88 (153)
|-++|-|++|||||++.+.+.+.. ..+ .|.-.+...+.. ....|.+-|+||.-+- .......++++.++
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL 241 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVL 241 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhhee
Confidence 678999999999999999887632 222 244444455554 4457999999995332 23345667899999
Q ss_pred EEEEECCCccc------HHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC-CCHhHHHHHh
Q 031796 89 IFVVDSNDRDR------VVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-MNAAEITDKL 143 (153)
Q Consensus 89 i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~-~~~~~~~~~~ 143 (153)
++|+|++..+. +..+...+..+ .....+.|.++|+||+|+... +..+++++.+
T Consensus 242 ~hviD~s~~~~~dp~~~~~~i~~EL~~Y--~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l 301 (369)
T COG0536 242 LHVIDLSPIDGRDPIEDYQTIRNELEKY--SPKLAEKPRIVVLNKIDLPLDEEELEELKKAL 301 (369)
T ss_pred EEEEecCcccCCCHHHHHHHHHHHHHHh--hHHhccCceEEEEeccCCCcCHHHHHHHHHHH
Confidence 99999986542 33333333332 234467899999999996544 4444454444
No 269
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.33 E-value=2.7e-11 Score=85.19 Aligned_cols=111 Identities=14% Similarity=0.121 Sum_probs=69.6
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEE
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (153)
......++++|.+|+|||||++.+.+..-... ....+ ........+.++.++||||.. ... ....+.+|++++++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~i~i~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVllvi 111 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-PITVVTGKKRRLTFIECPNDI--NAM-IDIAKVADLVLLLI 111 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-cEEEEecCCceEEEEeCCchH--HHH-HHHHHhcCEEEEEE
Confidence 35567899999999999999999876421111 11111 112233466789999999854 222 34468899999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCce-EEEEEeCCCccCC
Q 031796 93 DSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNA 133 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p-ii~v~~K~Dl~~~ 133 (153)
|.+...... ...+...+.. .+.| +++|.||+|+.+.
T Consensus 112 Da~~~~~~~--~~~i~~~l~~---~g~p~vi~VvnK~D~~~~ 148 (225)
T cd01882 112 DASFGFEME--TFEFLNILQV---HGFPRVMGVLTHLDLFKK 148 (225)
T ss_pred ecCcCCCHH--HHHHHHHHHH---cCCCeEEEEEeccccCCc
Confidence 987543221 1222333332 2456 4569999998643
No 270
>COG2262 HflX GTPases [General function prediction only]
Probab=99.32 E-value=3.1e-11 Score=89.52 Aligned_cols=119 Identities=18% Similarity=0.244 Sum_probs=84.7
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcc-c--ccCceeeEEEEEEEc-CeEEEEEEcCCCCC---------chhcHHHh
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYK-NISFTVWDVGGQDK---------IRPLWRHY 81 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~-~--~~~t~~~~~~~~~~~-~~~~~i~D~~g~~~---------~~~~~~~~ 81 (153)
..-..|.++|-+++|||||+|++.+.... . -..|...+...+... +..+.+-||-|--+ |++.. ..
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTL-EE 268 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTL-EE 268 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHH-HH
Confidence 34478999999999999999999976544 2 245666666777766 47888889999432 23332 23
Q ss_pred hcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCC
Q 031796 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (153)
Q Consensus 82 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~ 135 (153)
...+|.++.|+|++++.....+ .....++......++|+|+|.||+|+.....
T Consensus 269 ~~~aDlllhVVDaSdp~~~~~~-~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~ 321 (411)
T COG2262 269 VKEADLLLHVVDASDPEILEKL-EAVEDVLAEIGADEIPIILVLNKIDLLEDEE 321 (411)
T ss_pred hhcCCEEEEEeecCChhHHHHH-HHHHHHHHHcCCCCCCEEEEEecccccCchh
Confidence 4679999999999998443333 3334445555556799999999999765443
No 271
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.32 E-value=1.3e-11 Score=89.27 Aligned_cols=114 Identities=17% Similarity=0.302 Sum_probs=65.5
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCCccccc-----------CceeeEEEE--EEEcC--eEEEEEEcCCCCCc-------
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTI-----------PTIGFNVET--VEYKN--ISFTVWDVGGQDKI------- 74 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~~~~~~-----------~t~~~~~~~--~~~~~--~~~~i~D~~g~~~~------- 74 (153)
.++|+|+|++|+|||||+|.+++....... .+..+.... +...+ +++.++||||-...
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 589999999999999999999987643221 223333332 22232 68999999993211
Q ss_pred h-------hcHHHhh-------------cCCCEEEEEEECCCcccHHHHH-HHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 75 R-------PLWRHYF-------------QNTQGLIFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 75 ~-------~~~~~~~-------------~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
. .....++ .++|+.+|+++.+.. ....+. ..+..+ . ...++|.|+.|.|.-..
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~Di~~mk~L-s----~~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLDIEFMKRL-S----KRVNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHHHHHHHHH-T----TTSEEEEEESTGGGS-H
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHHHHHHHHh-c----ccccEEeEEecccccCH
Confidence 0 0001111 246999999997643 222222 233333 3 25889999999998765
Q ss_pred CCH
Q 031796 134 MNA 136 (153)
Q Consensus 134 ~~~ 136 (153)
.+.
T Consensus 158 ~el 160 (281)
T PF00735_consen 158 EEL 160 (281)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 272
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.31 E-value=3.7e-11 Score=97.27 Aligned_cols=113 Identities=21% Similarity=0.132 Sum_probs=76.4
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcc------------ccc-------CceeeEEEEEEE----cCeEEEEEEcCCC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV------------TTI-------PTIGFNVETVEY----KNISFTVWDVGGQ 71 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~------------~~~-------~t~~~~~~~~~~----~~~~~~i~D~~g~ 71 (153)
.+..+|+++|..++|||||+.+++...-. +.. .|+......+.+ .+..++++||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 45678999999999999999999742100 000 112222222222 4678999999999
Q ss_pred CCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 72 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
.+|.......++.+|++++|+|+...-... ....|...... +.|.|++.||+|...
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~~----~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALRE----RVKPVLFINKVDRLI 153 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHHc----CCCeEEEEECchhhc
Confidence 999888888899999999999987542222 22223332222 457789999999864
No 273
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=3.4e-11 Score=88.38 Aligned_cols=123 Identities=19% Similarity=0.212 Sum_probs=86.0
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCcc----cccCceeeEEEEEEEcC-----------------------------
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVETVEYKN----------------------------- 60 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~----~~~~t~~~~~~~~~~~~----------------------------- 60 (153)
...+.-|+++|+.+.|||||++.++.+.++ ..+||+..-...+.+..
T Consensus 55 fd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln 134 (532)
T KOG1954|consen 55 FDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN 134 (532)
T ss_pred cccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence 355667999999999999999999998876 34566655444333211
Q ss_pred ------------eEEEEEEcCCC-----------CCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCC
Q 031796 61 ------------ISFTVWDVGGQ-----------DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR 117 (153)
Q Consensus 61 ------------~~~~i~D~~g~-----------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 117 (153)
-++.+.||||- -.|......+..++|.++++||....+--.+....+..+.. .
T Consensus 135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG----~ 210 (532)
T KOG1954|consen 135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG----H 210 (532)
T ss_pred HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC----C
Confidence 13999999993 13455677888999999999998766544445444444433 3
Q ss_pred CceEEEEEeCCCccCCCCHhHHHHHh
Q 031796 118 DAVLLVFANKQDLPNAMNAAEITDKL 143 (153)
Q Consensus 118 ~~pii~v~~K~Dl~~~~~~~~~~~~~ 143 (153)
+-.+-+|+||.|..+. ++++.-+
T Consensus 211 EdkiRVVLNKADqVdt---qqLmRVy 233 (532)
T KOG1954|consen 211 EDKIRVVLNKADQVDT---QQLMRVY 233 (532)
T ss_pred cceeEEEeccccccCH---HHHHHHH
Confidence 5678899999996554 4444443
No 274
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.30 E-value=9e-12 Score=86.03 Aligned_cols=117 Identities=23% Similarity=0.382 Sum_probs=80.3
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCc----ccccCceeeEEEEEEEcC-eEEEEEEcCCCCCc-----hhcHHHhhcCC
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEI----VTTIPTIGFNVETVEYKN-ISFTVWDVGGQDKI-----RPLWRHYFQNT 85 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~----~~~~~t~~~~~~~~~~~~-~~~~i~D~~g~~~~-----~~~~~~~~~~~ 85 (153)
...|++++|.+|+||||+-..++.+.. ....+|++++......-+ +-+.+||++|++.+ .......+++.
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 457999999999999998665553321 123456666665555444 78899999999843 33456678999
Q ss_pred CEEEEEEECCCccc---HHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 86 QGLIFVVDSNDRDR---VVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 86 ~~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
+++++|||++..+- +...+.-+..+++.. +...+.+..+|+|+....
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~S--P~AkiF~l~hKmDLv~~d 132 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNS--PEAKIFCLLHKMDLVQED 132 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcC--CcceEEEEEeechhcccc
Confidence 99999999875432 222333344444432 667789999999998653
No 275
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.28 E-value=5.6e-11 Score=79.70 Aligned_cols=63 Identities=25% Similarity=0.383 Sum_probs=42.1
Q ss_pred EEEEEEcCCCC----CchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCC
Q 031796 62 SFTVWDVGGQD----KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128 (153)
Q Consensus 62 ~~~i~D~~g~~----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~ 128 (153)
.+.++||||-. .....+..+++.+|++++|.+.+...+-.. ...+....... ...+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~-~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESD-MEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHH-HHHHHHHHTTT---CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHH-HHHHHHHhcCC---CCeEEEEEcCC
Confidence 39999999953 234667888899999999999987544333 33334333332 33489999984
No 276
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=1e-10 Score=89.46 Aligned_cols=115 Identities=17% Similarity=0.161 Sum_probs=87.8
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCc-----------cc-------ccCceeeEEEEEEEcC---eEEEEEEcCCCCC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEI-----------VT-------TIPTIGFNVETVEYKN---ISFTVWDVGGQDK 73 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~-----------~~-------~~~t~~~~~~~~~~~~---~~~~i~D~~g~~~ 73 (153)
.+-.|+.++-.-.-|||||..+++...- .. --.|+......+.+.. +.++++||||+.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 4567899999999999999999964221 00 0124445555566655 9999999999999
Q ss_pred chhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 74 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
|......-+..|+++++|+|++..-..+.....+..+.. ++.+|.|+||+|++.+.
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~-----~L~iIpVlNKIDlp~ad 193 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA-----GLAIIPVLNKIDLPSAD 193 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc-----CCeEEEeeeccCCCCCC
Confidence 999988889999999999999876555555555555433 68899999999999765
No 277
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.27 E-value=8.4e-12 Score=92.77 Aligned_cols=110 Identities=15% Similarity=0.200 Sum_probs=61.4
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCce-----eeEEEEEEEcC-eEEEEEEcCCCCCchhcHHHh-----
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTI-----GFNVETVEYKN-ISFTVWDVGGQDKIRPLWRHY----- 81 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~-----~~~~~~~~~~~-~~~~i~D~~g~~~~~~~~~~~----- 81 (153)
...+++|.|+|++|+|||||||++.+-.-.. ....+ ..+...+.... -++.+||.||..........|
T Consensus 32 ~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 32 DNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp HH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred hcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 3577999999999999999999997632211 11111 12222233333 369999999964433333333
Q ss_pred hcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCc
Q 031796 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (153)
Q Consensus 82 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl 130 (153)
+.+.|.+|++.+ +.|.....++...+++ .+.|+++|-||+|.
T Consensus 112 ~~~yD~fiii~s----~rf~~ndv~La~~i~~---~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 112 FYRYDFFIIISS----ERFTENDVQLAKEIQR---MGKKFYFVRTKVDS 153 (376)
T ss_dssp GGG-SEEEEEES----SS--HHHHHHHHHHHH---TT-EEEEEE--HHH
T ss_pred ccccCEEEEEeC----CCCchhhHHHHHHHHH---cCCcEEEEEecccc
Confidence 446788877665 3466666666665555 47899999999995
No 278
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.27 E-value=5.6e-11 Score=89.64 Aligned_cols=128 Identities=20% Similarity=0.195 Sum_probs=93.5
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcc-----------cc-------cCceeeEEEEEEE-----cCeEEEEEEcCCC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-----------TT-------IPTIGFNVETVEY-----KNISFTVWDVGGQ 71 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~-----------~~-------~~t~~~~~~~~~~-----~~~~~~i~D~~g~ 71 (153)
++-.|..++-.-.-|||||..|++...-. .+ ..|+..+...+.+ +.+.++++||||+
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 34577888999999999999999753210 01 1244444444433 4489999999999
Q ss_pred CCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC---CHhHHHHHhCCCc
Q 031796 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHS 147 (153)
Q Consensus 72 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~---~~~~~~~~~~~~~ 147 (153)
.+|.-.....+..|.+.++|+|++..-..+.+...+..+.+ +..+|.|+||+||+.+. -.+++.+-+|++.
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~-----~LeIiPViNKIDLP~Adpervk~eIe~~iGid~ 160 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-----NLEIIPVLNKIDLPAADPERVKQEIEDIIGIDA 160 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc-----CcEEEEeeecccCCCCCHHHHHHHHHHHhCCCc
Confidence 99988888889999999999999876555556555555533 67899999999999865 2556666777654
No 279
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=1.1e-10 Score=86.73 Aligned_cols=114 Identities=25% Similarity=0.269 Sum_probs=79.4
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCC--cc-------------------------c-------ccCceeeEEEEEEEc
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGE--IV-------------------------T-------TIPTIGFNVETVEYK 59 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~--~~-------------------------~-------~~~t~~~~~~~~~~~ 59 (153)
.+..++++++|...+||||++-+++-+- +. . ...|+......++..
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 3677999999999999999998886311 00 0 011344444556666
Q ss_pred CeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcc---cH-----HHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031796 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RV-----VEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~-----~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~ 131 (153)
.+.+.+.|+||+.+|-.....-..++|+.++|+|+.+.+ .| ......+...+. -..+|++.||+|+.
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-----i~~lIVavNKMD~v 158 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-----IKQLIVAVNKMDLV 158 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-----CceEEEEEEccccc
Confidence 788999999999888766666778999999999998653 11 112223333332 34588999999998
Q ss_pred C
Q 031796 132 N 132 (153)
Q Consensus 132 ~ 132 (153)
+
T Consensus 159 ~ 159 (428)
T COG5256 159 S 159 (428)
T ss_pred c
Confidence 5
No 280
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=4.3e-11 Score=91.33 Aligned_cols=118 Identities=20% Similarity=0.237 Sum_probs=84.2
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCcccccC---ceeeEEEEEEEc---CeEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIP---TIGFNVETVEYK---NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~---t~~~~~~~~~~~---~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
+..=+.+||.-..|||||+..+...+.....+ |--+--+.+... .-.+.+.|||||+.|..++..-.+-+|+++
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 45668999999999999999998776553322 222222333332 358999999999999999988888899999
Q ss_pred EEEECCCc---ccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHH
Q 031796 90 FVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDK 142 (153)
Q Consensus 90 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~ 142 (153)
+|+|+.+. ++.+++ ++....+.|++++.||+|.++.. +.....+
T Consensus 84 LVVa~dDGv~pQTiEAI--------~hak~a~vP~iVAiNKiDk~~~n-p~~v~~e 130 (509)
T COG0532 84 LVVAADDGVMPQTIEAI--------NHAKAAGVPIVVAINKIDKPEAN-PDKVKQE 130 (509)
T ss_pred EEEEccCCcchhHHHHH--------HHHHHCCCCEEEEEecccCCCCC-HHHHHHH
Confidence 99999764 222222 33334689999999999998443 3343333
No 281
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.24 E-value=1.9e-10 Score=88.49 Aligned_cols=131 Identities=18% Similarity=0.215 Sum_probs=92.0
Q ss_pred hcccCccEEEEEcCCCCCHHHHHHhHhcCCcccc-----cCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCC
Q 031796 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (153)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-----~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 86 (153)
...++-++++++|+.++|||.+++.++++.+... .+...++.....++..-+.+-|.+.. ........- ..||
T Consensus 420 ~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cD 497 (625)
T KOG1707|consen 420 QTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACD 497 (625)
T ss_pred cccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceee
Confidence 3446668999999999999999999999876532 22233333333344445566666644 222222222 6799
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC-----CCHhHHHHHhCCCc
Q 031796 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHS 147 (153)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~-----~~~~~~~~~~~~~~ 147 (153)
+++++||.+++.+|.-........... ...|+++|++|+|+... .++.+++.+++++.
T Consensus 498 v~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~ 560 (625)
T KOG1707|consen 498 VACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPP 560 (625)
T ss_pred eEEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCCC
Confidence 999999999999998776655554333 68999999999998653 35788999988764
No 282
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.24 E-value=4.4e-11 Score=87.93 Aligned_cols=77 Identities=27% Similarity=0.413 Sum_probs=53.9
Q ss_pred EEEEcCCCCCHHHHHHhHhcCCcc-------cccCceeeEEEEE-------------------E-EcCeEEEEEEcCCC-
Q 031796 20 ILMVGLDAAGKTTILYKLKLGEIV-------TTIPTIGFNVETV-------------------E-YKNISFTVWDVGGQ- 71 (153)
Q Consensus 20 i~v~G~~~~GKSsli~~~~~~~~~-------~~~~t~~~~~~~~-------------------~-~~~~~~~i~D~~g~- 71 (153)
+.++|.++||||||++++++.... +..|+.+...... . ...+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 478999999999999999987642 1233443333211 1 13368999999997
Q ss_pred ---CCchhcHHH---hhcCCCEEEEEEECCC
Q 031796 72 ---DKIRPLWRH---YFQNTQGLIFVVDSND 96 (153)
Q Consensus 72 ---~~~~~~~~~---~~~~~~~~i~v~d~~~ 96 (153)
+++..+... .++++|++++|+|++.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 444444333 5899999999999973
No 283
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.23 E-value=1.1e-10 Score=82.77 Aligned_cols=80 Identities=16% Similarity=0.210 Sum_probs=56.1
Q ss_pred eEEEEEEcCCCCCc------hhc-HHHhhcC-CCEEEEEEEC---CCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCC
Q 031796 61 ISFTVWDVGGQDKI------RPL-WRHYFQN-TQGLIFVVDS---NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD 129 (153)
Q Consensus 61 ~~~~i~D~~g~~~~------~~~-~~~~~~~-~~~~i~v~d~---~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~D 129 (153)
.+..++|||||-+. ..+ ...+... .-++++++|. +++.+|..-..+-..++.+ .+.|.|++.||+|
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk---tklp~ivvfNK~D 192 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK---TKLPFIVVFNKTD 192 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh---ccCCeEEEEeccc
Confidence 56999999998532 112 2222222 3456788885 4566788777777888877 6799999999999
Q ss_pred ccCCCCHhHHHHHh
Q 031796 130 LPNAMNAAEITDKL 143 (153)
Q Consensus 130 l~~~~~~~~~~~~~ 143 (153)
+.+..-+.+++..+
T Consensus 193 v~d~~fa~eWm~Df 206 (366)
T KOG1532|consen 193 VSDSEFALEWMTDF 206 (366)
T ss_pred ccccHHHHHHHHHH
Confidence 99887666665544
No 284
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.23 E-value=5.8e-11 Score=75.44 Aligned_cols=89 Identities=18% Similarity=0.157 Sum_probs=63.5
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCccccc--CceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVTTI--PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 95 (153)
+|++++|..|+|||+++.++....+.... +|.+ +........+.++.++.|++.+
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~~~ 57 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWRVD 57 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEEEEEEcc
Confidence 58999999999999999999766554211 2222 2233345567889999999999
Q ss_pred CcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 96 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
+.+++... |...+... ...++|.++++||.|+.+
T Consensus 58 ~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~ 91 (124)
T smart00010 58 DRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEE 91 (124)
T ss_pred CHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHh
Confidence 98888665 44433332 235789999999999854
No 285
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=3.7e-10 Score=90.19 Aligned_cols=127 Identities=19% Similarity=0.158 Sum_probs=92.2
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCC--------------cccc-------cCceeeEEEEEEEcC-eEEEEEEcCCC
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGE--------------IVTT-------IPTIGFNVETVEYKN-ISFTVWDVGGQ 71 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~--------------~~~~-------~~t~~~~~~~~~~~~-~~~~i~D~~g~ 71 (153)
..+..++.++|+..+||||+..+++-.. +.+. .-|+.....+..+.+ ..++++||||+
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 3567899999999999999999986421 1100 114444445677785 99999999999
Q ss_pred CCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC---CHhHHHHHhCC
Q 031796 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGL 145 (153)
Q Consensus 72 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~---~~~~~~~~~~~ 145 (153)
.+|.......++-+|+++.|+|+...-..+ ....|.+... .++|.+++.||+|..... ..+++.+.++.
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~Q-TEtv~rqa~~----~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~ 158 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQ-TETVWRQADK----YGVPRILFVNKMDRLGADFYLVVEQLKERLGA 158 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeec-HHHHHHHHhh----cCCCeEEEEECccccccChhhhHHHHHHHhCC
Confidence 999999999999999999999987543332 2334444434 379999999999987654 34555555543
No 286
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.19 E-value=3.6e-10 Score=85.40 Aligned_cols=78 Identities=29% Similarity=0.356 Sum_probs=54.1
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCccc-ccC--ceeeEEEEEE------------------------EcCeEEEEEEcCC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIP--TIGFNVETVE------------------------YKNISFTVWDVGG 70 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~--t~~~~~~~~~------------------------~~~~~~~i~D~~g 70 (153)
++|.++|.+++|||||+|++++.+... ..| |...+..... .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 689999999999999999999876531 222 2233332211 1236789999999
Q ss_pred CC----CchhcH---HHhhcCCCEEEEEEECC
Q 031796 71 QD----KIRPLW---RHYFQNTQGLIFVVDSN 95 (153)
Q Consensus 71 ~~----~~~~~~---~~~~~~~~~~i~v~d~~ 95 (153)
.. ....+. ...++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 43 333333 33488999999999997
No 287
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.18 E-value=2.7e-11 Score=85.74 Aligned_cols=68 Identities=21% Similarity=0.177 Sum_probs=35.2
Q ss_pred EEEEEEcCCCCCchhcHHHhh--------cCCCEEEEEEECCCcc---cHHHHHH-HHHHHHcCCCCCCceEEEEEeCCC
Q 031796 62 SFTVWDVGGQDKIRPLWRHYF--------QNTQGLIFVVDSNDRD---RVVEARD-ELHRMLNEDELRDAVLLVFANKQD 129 (153)
Q Consensus 62 ~~~i~D~~g~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~---s~~~~~~-~~~~~~~~~~~~~~pii~v~~K~D 129 (153)
.+.++|||||.++...+...- ...-++++++|..-.. .|....- -+....+ .+.|.|.|.||+|
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~----~~lP~vnvlsK~D 167 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLR----LELPHVNVLSKID 167 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHH----HTSEEEEEE--GG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhh----CCCCEEEeeeccC
Confidence 699999999987644433222 2345778999975433 3432221 1111222 3799999999999
Q ss_pred ccCC
Q 031796 130 LPNA 133 (153)
Q Consensus 130 l~~~ 133 (153)
+.++
T Consensus 168 l~~~ 171 (238)
T PF03029_consen 168 LLSK 171 (238)
T ss_dssp GS-H
T ss_pred cccc
Confidence 9874
No 288
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=4.8e-10 Score=83.92 Aligned_cols=129 Identities=22% Similarity=0.306 Sum_probs=94.1
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhc--CCc--------------cc-----cc----CceeeEEEEEEEcCeEEEEEEcC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKL--GEI--------------VT-----TI----PTIGFNVETVEYKNISFTVWDVG 69 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~--~~~--------------~~-----~~----~t~~~~~~~~~~~~~~~~i~D~~ 69 (153)
.++....++-.+.+|||||-..++- +-+ .. -+ .++.....++++.+..+++.|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 4557788999999999999988752 111 00 01 12333445678899999999999
Q ss_pred CCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC---CHhHHHHHhCCC
Q 031796 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLH 146 (153)
Q Consensus 70 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~---~~~~~~~~~~~~ 146 (153)
|+++|..-+...+..+|+.++|+|+... .+.-...+-...+ ..++||+-+.||+|..... ..+++++.+++.
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKG--iE~qT~KLfeVcr---lR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~ 164 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKG--IEPQTLKLFEVCR---LRDIPIFTFINKLDREGRDPLELLDEIEEELGIQ 164 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccC--ccHHHHHHHHHHh---hcCCceEEEeeccccccCChHHHHHHHHHHhCcc
Confidence 9999998888889999999999998653 3333333333333 3689999999999977543 477888888877
Q ss_pred cc
Q 031796 147 SL 148 (153)
Q Consensus 147 ~~ 148 (153)
..
T Consensus 165 ~~ 166 (528)
T COG4108 165 CA 166 (528)
T ss_pred ee
Confidence 54
No 289
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.16 E-value=2.6e-10 Score=87.53 Aligned_cols=117 Identities=17% Similarity=0.184 Sum_probs=74.0
Q ss_pred cccCccEEEEEcCCCCCHHHHHHhHhcCCcc--ccc----CceeeEEEEE---------------EE-------------
Q 031796 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV--TTI----PTIGFNVETV---------------EY------------- 58 (153)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~--~~~----~t~~~~~~~~---------------~~------------- 58 (153)
..+..++|.++|.-..|||||+.++.+.... ..+ -|+..-+... ..
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 3466799999999999999999999864321 001 1111111100 00
Q ss_pred -----cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcc-cHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 59 -----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 59 -----~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
....+.++|+||++.|-.....-...+|++++|+|+.+.. ..+. ...+. +.... .-.++++|.||+|+.+
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT-~ehl~-i~~~l--gi~~iIVvlNKiDlv~ 185 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQT-SEHLA-AVEIM--KLKHIIILQNKIDLVK 185 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhh-HHHHH-HHHHc--CCCcEEEEEecccccC
Confidence 0136899999999988766666678999999999998631 1111 11121 11111 1246899999999975
Q ss_pred C
Q 031796 133 A 133 (153)
Q Consensus 133 ~ 133 (153)
.
T Consensus 186 ~ 186 (460)
T PTZ00327 186 E 186 (460)
T ss_pred H
Confidence 4
No 290
>PRK13768 GTPase; Provisional
Probab=99.16 E-value=6.3e-11 Score=84.71 Aligned_cols=79 Identities=16% Similarity=0.147 Sum_probs=47.7
Q ss_pred EEEEEEcCCCCCc---hhcHHHhhc---C--CCEEEEEEECCCcccHHHHHH-HHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 62 SFTVWDVGGQDKI---RPLWRHYFQ---N--TQGLIFVVDSNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 62 ~~~i~D~~g~~~~---~~~~~~~~~---~--~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
.+.+||+||+.+. +..+..+.+ . .+++++++|++...+...... ++....... ..+.|+++|+||+|+.+
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence 6999999998664 333333333 2 789999999965443322221 211111100 13689999999999987
Q ss_pred CCCHhHHHH
Q 031796 133 AMNAAEITD 141 (153)
Q Consensus 133 ~~~~~~~~~ 141 (153)
..+.+++.+
T Consensus 177 ~~~~~~~~~ 185 (253)
T PRK13768 177 EEELERILK 185 (253)
T ss_pred chhHHHHHH
Confidence 655444433
No 291
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=3.6e-10 Score=86.58 Aligned_cols=122 Identities=21% Similarity=0.250 Sum_probs=86.1
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccccC---c--eeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP---T--IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~---t--~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
+++.=+-+||.-.-|||||+..+.+......+. | ++--...+. .+.++.+.||||+.-|..++..-.+-+|.++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvV 229 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVV 229 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEE
Confidence 456678999999999999999998776543211 2 222222333 6689999999999999999998888899999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHh
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKL 143 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~ 143 (153)
+|+.+.|.- +....+...+....+.|+|+.+||+|.+++. .+...+++
T Consensus 230 LVVAadDGV-----mpQT~EaIkhAk~A~VpiVvAinKiDkp~a~-pekv~~eL 277 (683)
T KOG1145|consen 230 LVVAADDGV-----MPQTLEAIKHAKSANVPIVVAINKIDKPGAN-PEKVKREL 277 (683)
T ss_pred EEEEccCCc-----cHhHHHHHHHHHhcCCCEEEEEeccCCCCCC-HHHHHHHH
Confidence 999987641 1111222233444689999999999988553 34444443
No 292
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.14 E-value=1.8e-09 Score=85.04 Aligned_cols=115 Identities=12% Similarity=0.114 Sum_probs=71.0
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCcc-cc---cCceeeEEEEEEEcCeEEEEEEcCCCCCch-------hc---HHHh
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TT---IPTIGFNVETVEYKNISFTVWDVGGQDKIR-------PL---WRHY 81 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~-~~---~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~---~~~~ 81 (153)
..++|+++|.+|+||||++|++++.+.. .. ..|+..........+..+.++||||-.... .. ...+
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~ 196 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF 196 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence 3478999999999999999999987632 21 123333333334467889999999965431 11 1223
Q ss_pred hc--CCCEEEEEEECCCcccHH---HHHHHHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 82 FQ--NTQGLIFVVDSNDRDRVV---EARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 82 ~~--~~~~~i~v~d~~~~~s~~---~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
+. .+|++|+|..++...... .....+..++....+. -+|||.|+.|...
T Consensus 197 Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk--~tIVVFThgD~lp 250 (763)
T TIGR00993 197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWF--NAIVTLTHAASAP 250 (763)
T ss_pred HhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHc--CEEEEEeCCccCC
Confidence 33 479999998875333221 2333344444432222 2788888888764
No 293
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.11 E-value=1.5e-10 Score=87.80 Aligned_cols=118 Identities=16% Similarity=0.201 Sum_probs=78.2
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcc-cc--cCceeeEEEEEEEcCeEEEEEEcCCCCCc----hhcHHH-----hh
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKNISFTVWDVGGQDKI----RPLWRH-----YF 82 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~-~~--~~t~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~~~-----~~ 82 (153)
.+..+++++|-+++|||||++.+...... .+ .+|...-.+.+++.-..+++.||||--+. +...+. ..
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALA 245 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALA 245 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHH
Confidence 56689999999999999999888665432 22 23455556677777889999999994221 111111 11
Q ss_pred cCCCEEEEEEECCCcccH--HHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 83 QNTQGLIFVVDSNDRDRV--VEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 83 ~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
+--.+|+|+.|++..+.+ .+-...+..+ +....+.|+|+|+||+|+...+
T Consensus 246 HLraaVLYfmDLSe~CGySva~QvkLfhsI--KpLFaNK~~IlvlNK~D~m~~e 297 (620)
T KOG1490|consen 246 HLRSAVLYFMDLSEMCGYSVAAQVKLYHSI--KPLFANKVTILVLNKIDAMRPE 297 (620)
T ss_pred HhhhhheeeeechhhhCCCHHHHHHHHHHh--HHHhcCCceEEEeecccccCcc
Confidence 112568999999987644 3333333333 2233578999999999997654
No 294
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.11 E-value=7.1e-10 Score=81.06 Aligned_cols=126 Identities=21% Similarity=0.237 Sum_probs=87.6
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcc------------------------------------cccCceeeEEEEEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV------------------------------------TTIPTIGFNVETVEY 58 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~------------------------------------~~~~t~~~~~~~~~~ 58 (153)
+..++++-+|...-||||||-|++-..-. +.-.|+.+.+..+..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 56689999999999999999998742200 011255555566666
Q ss_pred cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcccHHH---HHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-
Q 031796 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVE---ARDELHRMLNEDELRDAVLLVFANKQDLPNAM- 134 (153)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~---~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~- 134 (153)
...+|.+-||||+++|......-..-||+.++++|+- ....+ ...++..++.. .-+++..||+||.+-.
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR--~Gvl~QTrRHs~I~sLLGI-----rhvvvAVNKmDLvdy~e 156 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDAR--KGVLEQTRRHSFIASLLGI-----RHVVVAVNKMDLVDYSE 156 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecc--hhhHHHhHHHHHHHHHhCC-----cEEEEEEeeecccccCH
Confidence 7789999999999999777666678899999999983 32322 22334444332 3488889999998642
Q ss_pred --------CHhHHHHHhCCCc
Q 031796 135 --------NAAEITDKLGLHS 147 (153)
Q Consensus 135 --------~~~~~~~~~~~~~ 147 (153)
+-..+++++++..
T Consensus 157 ~~F~~I~~dy~~fa~~L~~~~ 177 (431)
T COG2895 157 EVFEAIVADYLAFAAQLGLKD 177 (431)
T ss_pred HHHHHHHHHHHHHHHHcCCCc
Confidence 2445666666554
No 295
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.11 E-value=1.4e-09 Score=81.55 Aligned_cols=128 Identities=21% Similarity=0.211 Sum_probs=78.3
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcC----Ccc-------------cc-----cCceeeEE---EE-----EEEcCeEEEE
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLG----EIV-------------TT-----IPTIGFNV---ET-----VEYKNISFTV 65 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~----~~~-------------~~-----~~t~~~~~---~~-----~~~~~~~~~i 65 (153)
-.+-|.++|+.++|||||+++|.+. ... +. ..|+...+ .. .+....++.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 3478999999999999999999887 221 11 11333333 22 2223478999
Q ss_pred EEcCCCC--------Cchh---------------------cHHHhhc-CCCEEEEEE-ECC----CcccHHHHHHHHHHH
Q 031796 66 WDVGGQD--------KIRP---------------------LWRHYFQ-NTQGLIFVV-DSN----DRDRVVEARDELHRM 110 (153)
Q Consensus 66 ~D~~g~~--------~~~~---------------------~~~~~~~-~~~~~i~v~-d~~----~~~s~~~~~~~~~~~ 110 (153)
.||+|-. +-.. -+...++ .++..++|. |.+ .++.+.+....+...
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 9999921 1111 0233445 789999888 764 123455555555555
Q ss_pred HcCCCCCCceEEEEEeCCCccCCCC---HhHHHHHhCCC
Q 031796 111 LNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLH 146 (153)
Q Consensus 111 ~~~~~~~~~pii~v~~K~Dl~~~~~---~~~~~~~~~~~ 146 (153)
++. .+.|+++|.||.|-...+. .+++.++++.+
T Consensus 176 Lk~---~~kPfiivlN~~dp~~~et~~l~~~l~eky~vp 211 (492)
T TIGR02836 176 LKE---LNKPFIILLNSTHPYHPETEALRQELEEKYDVP 211 (492)
T ss_pred HHh---cCCCEEEEEECcCCCCchhHHHHHHHHHHhCCc
Confidence 454 4799999999999432221 33555666654
No 296
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.10 E-value=7.8e-10 Score=83.42 Aligned_cols=114 Identities=21% Similarity=0.234 Sum_probs=83.5
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCC--cccc-------------c----CceeeEEEEEEEcCeEEEEEEcCCCCCchh
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGE--IVTT-------------I----PTIGFNVETVEYKNISFTVWDVGGQDKIRP 76 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~--~~~~-------------~----~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 76 (153)
.-.+|.++-...-|||||+..++.+. |... + .|+-.+-+.+.++++++++.||||+.+|.-
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 44789999999999999999998654 2111 0 133333456788999999999999999999
Q ss_pred cHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 77 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
..+..+.=+|++++++|+.+.. .-+-.-.+...+. ...+.|+|.||+|.+++.
T Consensus 84 EVERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~----~gL~PIVVvNKiDrp~Ar 136 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALA----LGLKPIVVINKIDRPDAR 136 (603)
T ss_pred hhhhhhhhcceEEEEEEcccCC-CCchhhhHHHHHH----cCCCcEEEEeCCCCCCCC
Confidence 8898999999999999987521 1111222233333 367778889999999875
No 297
>PRK09866 hypothetical protein; Provisional
Probab=99.09 E-value=3.4e-09 Score=83.35 Aligned_cols=68 Identities=16% Similarity=0.308 Sum_probs=44.2
Q ss_pred EEEEEEcCCCCCc-----hhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 62 SFTVWDVGGQDKI-----RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 62 ~~~i~D~~g~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
.+.+.||||-... .......+.++|++++|+|..+.-+... ..+...+.... ...|+++|+||+|+.+
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~-K~~PVILVVNKIDl~d 303 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVG-QSVPLYVLVNKFDQQD 303 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcC-CCCCEEEEEEcccCCC
Confidence 3788899996542 2233457889999999999876433222 22233333221 1359999999999864
No 298
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.07 E-value=4.3e-09 Score=74.49 Aligned_cols=68 Identities=18% Similarity=0.250 Sum_probs=42.1
Q ss_pred eEEEEEEcCCCCC-------------chhcHHHhhcC-CCEEEEEEECCCc-ccHHHHHHHHHHHHcCCCCCCceEEEEE
Q 031796 61 ISFTVWDVGGQDK-------------IRPLWRHYFQN-TQGLIFVVDSNDR-DRVVEARDELHRMLNEDELRDAVLLVFA 125 (153)
Q Consensus 61 ~~~~i~D~~g~~~-------------~~~~~~~~~~~-~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~pii~v~ 125 (153)
..+.++|+||-.. ...+...++++ .+.+++|+|+... .... . ..+...+.. ...|+++|+
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d-~-l~ia~~ld~---~~~rti~Vi 199 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSD-A-LKLAKEVDP---QGERTIGVI 199 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchh-H-HHHHHHHHH---cCCcEEEEE
Confidence 4699999999642 12345566774 4688999987532 2111 1 122222222 468899999
Q ss_pred eCCCccCC
Q 031796 126 NKQDLPNA 133 (153)
Q Consensus 126 ~K~Dl~~~ 133 (153)
||+|..+.
T Consensus 200 TK~D~~~~ 207 (240)
T smart00053 200 TKLDLMDE 207 (240)
T ss_pred ECCCCCCc
Confidence 99998754
No 299
>PTZ00258 GTP-binding protein; Provisional
Probab=99.05 E-value=2.7e-09 Score=80.25 Aligned_cols=81 Identities=22% Similarity=0.304 Sum_probs=57.4
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcc-cccC--ceeeEEEEEEEc-----------------CeEEEEEEcCCCCCc
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYK-----------------NISFTVWDVGGQDKI 74 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~-~~~~--t~~~~~~~~~~~-----------------~~~~~i~D~~g~~~~ 74 (153)
...++|.++|.+++|||||+|++.+.+.. .+.| |...+...+... ...+.+.|+||-..-
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 56689999999999999999999876643 2223 344555544433 235899999995421
Q ss_pred -------hhcHHHhhcCCCEEEEEEECC
Q 031796 75 -------RPLWRHYFQNTQGLIFVVDSN 95 (153)
Q Consensus 75 -------~~~~~~~~~~~~~~i~v~d~~ 95 (153)
.......++++|++++|+|+.
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 223345578899999999974
No 300
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.04 E-value=1.9e-09 Score=79.23 Aligned_cols=117 Identities=19% Similarity=0.288 Sum_probs=72.3
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccc-----------cCceeeEEEEEE--EcC--eEEEEEEcCCCCCc-----
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----------IPTIGFNVETVE--YKN--ISFTVWDVGGQDKI----- 74 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-----------~~t~~~~~~~~~--~~~--~~~~i~D~~g~~~~----- 74 (153)
.-.++|+++|+.|+|||||+|++++...... .++..+...... ..+ +++++.||||-.++
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 4568999999999999999999998753321 234444444333 233 68999999993211
Q ss_pred ---------hhcHHHhh--------------cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031796 75 ---------RPLWRHYF--------------QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 75 ---------~~~~~~~~--------------~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~ 131 (153)
......++ .++|+.||.+..+. ..+..+.-..-.-+. ..+.+|.|+.|.|..
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~ls----~~vNlIPVI~KaD~l 175 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRLS----KRVNLIPVIAKADTL 175 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHHh----cccCeeeeeeccccC
Confidence 11111121 13689999998663 233333322222222 257799999999987
Q ss_pred CCCCH
Q 031796 132 NAMNA 136 (153)
Q Consensus 132 ~~~~~ 136 (153)
...+.
T Consensus 176 T~~El 180 (373)
T COG5019 176 TDDEL 180 (373)
T ss_pred CHHHH
Confidence 65543
No 301
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.01 E-value=1.4e-09 Score=78.37 Aligned_cols=76 Identities=24% Similarity=0.225 Sum_probs=53.0
Q ss_pred EEEEcCCCCCHHHHHHhHhcCCcc-ccc--CceeeEEEEEEEcCe-----------------EEEEEEcCCCCCc-----
Q 031796 20 ILMVGLDAAGKTTILYKLKLGEIV-TTI--PTIGFNVETVEYKNI-----------------SFTVWDVGGQDKI----- 74 (153)
Q Consensus 20 i~v~G~~~~GKSsli~~~~~~~~~-~~~--~t~~~~~~~~~~~~~-----------------~~~i~D~~g~~~~----- 74 (153)
+.++|.+++|||||+|++++.+.. ... .|.......+...+. .+.++|+||-..-
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 478999999999999999987753 222 244555554444332 4899999995432
Q ss_pred --hhcHHHhhcCCCEEEEEEECC
Q 031796 75 --RPLWRHYFQNTQGLIFVVDSN 95 (153)
Q Consensus 75 --~~~~~~~~~~~~~~i~v~d~~ 95 (153)
.......++++|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 122344568899999999974
No 302
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.97 E-value=3.9e-09 Score=78.59 Aligned_cols=78 Identities=23% Similarity=0.297 Sum_probs=55.1
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcc-cccC--ceeeEEEEEEEcC-----------------eEEEEEEcCCCCCc---
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKN-----------------ISFTVWDVGGQDKI--- 74 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~-~~~~--t~~~~~~~~~~~~-----------------~~~~i~D~~g~~~~--- 74 (153)
+++.++|.+++|||||+|++++.+.. .+.| |.......+...+ ..+.+.|+||-..-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 68999999999999999999987732 2222 4444444444332 25899999995432
Q ss_pred ----hhcHHHhhcCCCEEEEEEECC
Q 031796 75 ----RPLWRHYFQNTQGLIFVVDSN 95 (153)
Q Consensus 75 ----~~~~~~~~~~~~~~i~v~d~~ 95 (153)
.......++++|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 122344578999999999984
No 303
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.97 E-value=3e-09 Score=88.21 Aligned_cols=97 Identities=20% Similarity=0.214 Sum_probs=65.3
Q ss_pred CCHHHHHHhHhcCCcccccC---ceeeEEEEEEEc------------------CeEEEEEEcCCCCCchhcHHHhhcCCC
Q 031796 28 AGKTTILYKLKLGEIVTTIP---TIGFNVETVEYK------------------NISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (153)
Q Consensus 28 ~GKSsli~~~~~~~~~~~~~---t~~~~~~~~~~~------------------~~~~~i~D~~g~~~~~~~~~~~~~~~~ 86 (153)
++||||+.++.+.......+ |-.+-...+... --.+.+|||||++.|..+.....+.+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 45999999998876543221 222211222111 013899999999999888877788899
Q ss_pred EEEEEEECCC---cccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 87 GLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 87 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
++++|+|+++ ++++..+. .+.. .++|+++|+||+|+..
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~-----~lk~---~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAIN-----ILRQ---YKTPFVVAANKIDLIP 592 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHH-----HHHH---cCCCEEEEEECCCCcc
Confidence 9999999986 33443332 2222 2579999999999853
No 304
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=7.4e-09 Score=81.17 Aligned_cols=112 Identities=17% Similarity=0.151 Sum_probs=77.5
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccccC--------------------ceeeEEEEE-----EEcCeEEEEEEcC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP--------------------TIGFNVETV-----EYKNISFTVWDVG 69 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~--------------------t~~~~~~~~-----~~~~~~~~i~D~~ 69 (153)
...+++.++|.-..|||+|+..+..+.-+...+ ++.....+. ....+-+++.|||
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 556889999999999999999887654221100 011111111 2234679999999
Q ss_pred CCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031796 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 70 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~ 131 (153)
|+..|.......++.+|++++++|+.+.-.+.. ...+....+ .+.|+++|+||+|..
T Consensus 206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhaiq----~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAIQ----NRLPIVVVINKVDRL 262 (971)
T ss_pred CcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHHHh----ccCcEEEEEehhHHH
Confidence 999998888888999999999999976544422 222222222 479999999999953
No 305
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=7.6e-09 Score=76.45 Aligned_cols=117 Identities=17% Similarity=0.298 Sum_probs=71.7
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCCcccc----------cCceeeEEEEEEE--cC--eEEEEEEcCCCCC-------c-
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT----------IPTIGFNVETVEY--KN--ISFTVWDVGGQDK-------I- 74 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~~~~~----------~~t~~~~~~~~~~--~~--~~~~i~D~~g~~~-------~- 74 (153)
.++++++|+.|.|||||+|+++...+... ..+..+....... .+ +++++.||||-.+ +
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 48999999999999999999987754422 1133444433333 23 6889999999321 1
Q ss_pred ------hhcHHHh-----------hc--CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCC
Q 031796 75 ------RPLWRHY-----------FQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (153)
Q Consensus 75 ------~~~~~~~-----------~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~ 135 (153)
.+....+ +. ++|+.+|.+..+.. .+..+.-.+-.-+. ..+.+|.|+.|.|.....+
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~----~~vNiIPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS----KKVNLIPVIAKADTLTKDE 175 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh----ccccccceeeccccCCHHH
Confidence 1111122 22 57899999986532 23333222222222 3688999999999876654
Q ss_pred HhH
Q 031796 136 AAE 138 (153)
Q Consensus 136 ~~~ 138 (153)
...
T Consensus 176 l~~ 178 (366)
T KOG2655|consen 176 LNQ 178 (366)
T ss_pred HHH
Confidence 333
No 306
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.88 E-value=9.5e-09 Score=69.41 Aligned_cols=55 Identities=22% Similarity=0.346 Sum_probs=37.8
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccccCcee--eEEEEEEEcCeEEEEEEcCC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEYKNISFTVWDVGG 70 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~i~D~~g 70 (153)
...++++++|.+++|||||+|++.+.+.....+..+ .....+.. +..+.++||||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~-~~~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL-DKKVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe-CCCEEEEECcC
Confidence 345899999999999999999999876543322222 22222222 24688999998
No 307
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.87 E-value=1.2e-08 Score=67.83 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=37.0
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEE-cCeEEEEEEcCC
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-KNISFTVWDVGG 70 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~D~~g 70 (153)
...+++++|.+|+|||||+|++.+.......++.+.+...... ..-.+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCCCEEEEECcC
Confidence 4678999999999999999999987654333322222211111 123478999998
No 308
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.87 E-value=8e-09 Score=67.53 Aligned_cols=52 Identities=23% Similarity=0.296 Sum_probs=36.8
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCCcccc--cCceeeEEEEEEEcCeEEEEEEcCCC
Q 031796 19 RILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQ 71 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~i~D~~g~ 71 (153)
+++++|.+|+||||++|++.+...... .+........+.... .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence 899999999999999999998875422 222222233333332 6799999995
No 309
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=2.1e-08 Score=77.70 Aligned_cols=115 Identities=17% Similarity=0.150 Sum_probs=75.2
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEEC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (153)
..++-+.++||+|+|||||++.+..+-...+...+.--++.+.+...++.+..+| ....++. ...+-+|.+++++|.
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp--~Dl~~mi-DvaKIaDLVlLlIdg 143 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECP--SDLHQMI-DVAKIADLVLLLIDG 143 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeCh--HHHHHHH-hHHHhhheeEEEecc
Confidence 3456688999999999999998865432222222223344556677889999999 3333333 234568999999997
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCH
Q 031796 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA 136 (153)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~ 136 (153)
. -.|.-....+..++..... +.++.|+|..|+....+.
T Consensus 144 n--fGfEMETmEFLnil~~HGm--PrvlgV~ThlDlfk~~st 181 (1077)
T COG5192 144 N--FGFEMETMEFLNILISHGM--PRVLGVVTHLDLFKNPST 181 (1077)
T ss_pred c--cCceehHHHHHHHHhhcCC--CceEEEEeecccccChHH
Confidence 4 2344334445555555432 338889999999876553
No 310
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=2.7e-08 Score=69.64 Aligned_cols=114 Identities=28% Similarity=0.401 Sum_probs=75.9
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCCcccc-----cCceeeEEEEEEEcCeEEEEEEcCCCCCch-h--cHHHhhcCCCEE
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEYKNISFTVWDVGGQDKIR-P--LWRHYFQNTQGL 88 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~~~~~-----~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~-~--~~~~~~~~~~~~ 88 (153)
+.+|+++|-..+||||+-+-.+.. ..+. +.|..+....+...-+++.+||.|||..+- . -....++.+-+.
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhk-MsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL 105 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL 105 (347)
T ss_pred CceEEEEeecccCcchhhheeeec-cCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence 356999999999999987554332 2221 112222222333345789999999997652 2 246778999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCC--CCCCceEEEEEeCCCccCC
Q 031796 89 IFVVDSNDRDRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~pii~v~~K~Dl~~~ 133 (153)
++|+|+. +.+.+....+.....+. ..+++.+-+..+|.|.-.+
T Consensus 106 ifvIDaQ--ddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsd 150 (347)
T KOG3887|consen 106 IFVIDAQ--DDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSD 150 (347)
T ss_pred EEEEech--HHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCch
Confidence 9999984 34555554454444332 4578999999999997643
No 311
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.80 E-value=1.2e-08 Score=64.21 Aligned_cols=112 Identities=19% Similarity=0.203 Sum_probs=69.1
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCC----CCchhcHHHhhcCCCEEEEEEE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ----DKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~----~~~~~~~~~~~~~~~~~i~v~d 93 (153)
.|++++|..|+|||||.+++.+.... +..|-.+++ ++ --.+||||. ..+.........++|++++|-.
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~l-ykKTQAve~-----~d--~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~ 73 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTL-YKKTQAVEF-----ND--KGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHA 73 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhh-hcccceeec-----cC--ccccCCchhhhhhhHHHHHHHHHhhccceeeeeec
Confidence 47899999999999999999876432 111222222 11 014589983 3333444556678999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCC---HhHHHHHhCC
Q 031796 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGL 145 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~---~~~~~~~~~~ 145 (153)
+.++.+--. ..+..+ ...|+|-|.+|.|+....+ .+++..+.|.
T Consensus 74 and~~s~f~--p~f~~~------~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa 120 (148)
T COG4917 74 ANDPESRFP--PGFLDI------GVKKVIGVVTKADLAEDADISLVKRWLREAGA 120 (148)
T ss_pred ccCccccCC--cccccc------cccceEEEEecccccchHhHHHHHHHHHHcCC
Confidence 988744211 111221 2455999999999995433 3444444443
No 312
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.76 E-value=1.1e-07 Score=69.29 Aligned_cols=83 Identities=19% Similarity=0.259 Sum_probs=59.3
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEc------CeEEEEEEcCCCCCchhcHHHhhcCC----
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK------NISFTVWDVGGQDKIRPLWRHYFQNT---- 85 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~------~~~~~i~D~~g~~~~~~~~~~~~~~~---- 85 (153)
..-+|+++|+.++|||||+.++-+.. ...+..+.++..+... ..++.+|-..|.-....+....+...
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e--~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae 128 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSE--TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE 128 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhccc--ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence 45789999999999999999987765 3344455555544432 25899999998876666655555433
Q ss_pred CEEEEEEECCCcccH
Q 031796 86 QGLIFVVDSNDRDRV 100 (153)
Q Consensus 86 ~~~i~v~d~~~~~s~ 100 (153)
-.+|++.|++++-.+
T Consensus 129 tlviltasms~Pw~~ 143 (473)
T KOG3905|consen 129 TLVILTASMSNPWTL 143 (473)
T ss_pred eEEEEEEecCCcHHH
Confidence 457889999998543
No 313
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=8.3e-08 Score=71.03 Aligned_cols=79 Identities=24% Similarity=0.318 Sum_probs=56.3
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCCcc-cccC--ceeeEEEEEEE------------------cCeEEEEEEcCCCC---
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEY------------------KNISFTVWDVGGQD--- 72 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~~~-~~~~--t~~~~~~~~~~------------------~~~~~~i~D~~g~~--- 72 (153)
.+++.++|-|+||||||+|+++...-. .++| |+..+...... ....+.++|++|..
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 478999999999999999999876522 2333 33333332221 12568999999943
Q ss_pred ----CchhcHHHhhcCCCEEEEEEECC
Q 031796 73 ----KIRPLWRHYFQNTQGLIFVVDSN 95 (153)
Q Consensus 73 ----~~~~~~~~~~~~~~~~i~v~d~~ 95 (153)
-........+|++|+++.|+|+.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 23555667789999999999986
No 314
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.74 E-value=4.5e-08 Score=69.29 Aligned_cols=85 Identities=32% Similarity=0.538 Sum_probs=63.9
Q ss_pred ceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcc----------cHHHHHHHHHHHHcCCCCC
Q 031796 48 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD----------RVVEARDELHRMLNEDELR 117 (153)
Q Consensus 48 t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~ 117 (153)
|+++-...+....++++++|.+||.+-+..|..++..+.++|||+.++... .+.+....+..+.+.....
T Consensus 189 TsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~ 268 (379)
T KOG0099|consen 189 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLR 268 (379)
T ss_pred ccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHh
Confidence 344444455556678999999999999999999999999999999976432 2344444455555555666
Q ss_pred CceEEEEEeCCCccC
Q 031796 118 DAVLLVFANKQDLPN 132 (153)
Q Consensus 118 ~~pii~v~~K~Dl~~ 132 (153)
.+.+|+.+||.|+..
T Consensus 269 tisvIlFLNKqDlla 283 (379)
T KOG0099|consen 269 TISVILFLNKQDLLA 283 (379)
T ss_pred hhheeEEecHHHHHH
Confidence 788999999999864
No 315
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.72 E-value=6.6e-08 Score=67.66 Aligned_cols=119 Identities=17% Similarity=0.244 Sum_probs=68.2
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCCccc----------ccCceeeEEE--EEEEcC--eEEEEEEcCCCCCc---hhc--
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGEIVT----------TIPTIGFNVE--TVEYKN--ISFTVWDVGGQDKI---RPL-- 77 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~~~~----------~~~t~~~~~~--~~~~~~--~~~~i~D~~g~~~~---~~~-- 77 (153)
.++|+|+|.+|.||||++|+++..+... ...|+.+... .+...+ +++.++||||-.+. ...
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence 5899999999999999999997654321 1124444332 333344 57889999993211 111
Q ss_pred ---------HHHh------------hc--CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 78 ---------WRHY------------FQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 78 ---------~~~~------------~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
...| +. ++|+.+|.+..+.. ++..+.-.+..-+.+ -..+|.|+-|.|--.-+
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~----vvNvvPVIakaDtlTle 200 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTE----VVNVVPVIAKADTLTLE 200 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhh----hheeeeeEeecccccHH
Confidence 1112 22 35788888877643 333322222221121 25588899999976544
Q ss_pred CHhHHH
Q 031796 135 NAAEIT 140 (153)
Q Consensus 135 ~~~~~~ 140 (153)
+..++.
T Consensus 201 Er~~Fk 206 (336)
T KOG1547|consen 201 ERSAFK 206 (336)
T ss_pred HHHHHH
Confidence 433333
No 316
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.72 E-value=5.9e-08 Score=64.37 Aligned_cols=56 Identities=25% Similarity=0.331 Sum_probs=39.6
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEE-EEEcCeEEEEEEcCC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET-VEYKNISFTVWDVGG 70 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~i~D~~g 70 (153)
....+++++|.+++||||+++++.+.......++.+.+... +...+..+.+|||||
T Consensus 99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpG 155 (156)
T cd01859 99 GKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLDTPG 155 (156)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence 35688999999999999999999976644444444433221 111234789999998
No 317
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.71 E-value=4.9e-08 Score=65.86 Aligned_cols=56 Identities=18% Similarity=0.386 Sum_probs=38.8
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccc--cCceeeEEEEEEEcCeEEEEEEcCCC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQ 71 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~i~D~~g~ 71 (153)
...++++++|.+++||||+++++.+..+... .+.+......+... ..+.++||||-
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-CCEEEEECCCC
Confidence 4457999999999999999999998776432 22222222223322 46789999994
No 318
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.70 E-value=2.2e-07 Score=65.52 Aligned_cols=96 Identities=17% Similarity=0.258 Sum_probs=66.2
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcc--cc-cCceeeEEEEEEEcCeEEEEEEcCCCCCch-------hcHHHhhcC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEYKNISFTVWDVGGQDKIR-------PLWRHYFQN 84 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~ 84 (153)
+-.-+++++|-|.+|||||+..+...+.. .+ ..|...-...+.+++..+++.|.||--+-. .......+.
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeec
Confidence 33468999999999999999998765432 22 223444456788899999999999943221 122344577
Q ss_pred CCEEEEEEECCCcccHHH-HHHHHHHH
Q 031796 85 TQGLIFVVDSNDRDRVVE-ARDELHRM 110 (153)
Q Consensus 85 ~~~~i~v~d~~~~~s~~~-~~~~~~~~ 110 (153)
+|.+++|+|++..+.-.+ +...+...
T Consensus 140 aDlilMvLDatk~e~qr~~le~ELe~v 166 (364)
T KOG1486|consen 140 ADLILMVLDATKSEDQREILEKELEAV 166 (364)
T ss_pred ccEEEEEecCCcchhHHHHHHHHHHHh
Confidence 999999999987665543 34444443
No 319
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.69 E-value=9.7e-08 Score=72.40 Aligned_cols=86 Identities=29% Similarity=0.507 Sum_probs=72.3
Q ss_pred CceeeEEEEEEE-cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcc----------cHHHHHHHHHHHHcCCC
Q 031796 47 PTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD----------RVVEARDELHRMLNEDE 115 (153)
Q Consensus 47 ~t~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~ 115 (153)
+|+++....+.. ....+.++|++|+..-+..|..++.++++++||+++++.+ .+.+....+..+.....
T Consensus 221 ~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~ 300 (389)
T PF00503_consen 221 KTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPW 300 (389)
T ss_dssp --SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGG
T ss_pred CCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcc
Confidence 467788888888 9999999999999999999999999999999999986443 36666778888888887
Q ss_pred CCCceEEEEEeCCCccC
Q 031796 116 LRDAVLLVFANKQDLPN 132 (153)
Q Consensus 116 ~~~~pii~v~~K~Dl~~ 132 (153)
..+.|++|++||.|+..
T Consensus 301 ~~~~~iil~lnK~D~f~ 317 (389)
T PF00503_consen 301 FKNTPIILFLNKIDLFE 317 (389)
T ss_dssp GTTSEEEEEEE-HHHHH
T ss_pred cccCceEEeeecHHHHH
Confidence 78999999999999753
No 320
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=8.7e-08 Score=74.11 Aligned_cols=118 Identities=22% Similarity=0.197 Sum_probs=77.6
Q ss_pred hcccCccEEEEEcCCCCCHHHHHHhHhcC--------------------Ccc--------cc------cCceeeEEEEEE
Q 031796 12 LFAKKEMRILMVGLDAAGKTTILYKLKLG--------------------EIV--------TT------IPTIGFNVETVE 57 (153)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKSsli~~~~~~--------------------~~~--------~~------~~t~~~~~~~~~ 57 (153)
...+..+.++++|...+||||+.-+++.. +.. .+ ..|..+....++
T Consensus 172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe 251 (603)
T KOG0458|consen 172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE 251 (603)
T ss_pred cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence 34456789999999999999999887531 100 00 012333334455
Q ss_pred EcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcccHHH------HHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031796 58 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVE------ARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 58 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~------~~~~~~~~~~~~~~~~~pii~v~~K~Dl~ 131 (153)
.....+++.|.||+..|-.....-...+|+.++|+|++.. .|+. -......+++.. .-..+|++.||+|+.
T Consensus 252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~-~FE~gfd~~gQtrEha~llr~L--gi~qlivaiNKmD~V 328 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTG-EFESGFDPGGQTREHALLLRSL--GISQLIVAINKMDLV 328 (603)
T ss_pred cCceeEEEecCCCccccchhhhccccccceEEEEEECCcc-hhhhccCCCCchHHHHHHHHHc--CcceEEEEeeccccc
Confidence 5667899999999988877777777889999999998742 2221 111222222222 134589999999997
Q ss_pred C
Q 031796 132 N 132 (153)
Q Consensus 132 ~ 132 (153)
+
T Consensus 329 ~ 329 (603)
T KOG0458|consen 329 S 329 (603)
T ss_pred C
Confidence 5
No 321
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.68 E-value=4.5e-08 Score=67.07 Aligned_cols=54 Identities=22% Similarity=0.351 Sum_probs=36.5
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCcc----------cccCceeeEEEEEEEcCeEEEEEEcCC
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIV----------TTIPTIGFNVETVEYKNISFTVWDVGG 70 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~----------~~~~t~~~~~~~~~~~~~~~~i~D~~g 70 (153)
+..+++++|.+|+|||||+|++.+.... ...|.+......+.... .+.++||||
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~DtPG 189 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN-GKKLYDTPG 189 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC-CCEEEeCcC
Confidence 4578999999999999999999875421 12232223333333322 578999998
No 322
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.67 E-value=1.1e-08 Score=71.24 Aligned_cols=87 Identities=29% Similarity=0.535 Sum_probs=64.6
Q ss_pred CceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCc----------ccHHHHHHHHHHHHcCCCC
Q 031796 47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------DRVVEARDELHRMLNEDEL 116 (153)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~ 116 (153)
||+++....++...+.+.+.|.+|+..-+..|..++++.-.+++++..+.. ....+....+..++.-+..
T Consensus 185 PTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF 264 (359)
T KOG0085|consen 185 PTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 264 (359)
T ss_pred CcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccc
Confidence 344554455555667789999999998889999999998888887765432 3344455556666677777
Q ss_pred CCceEEEEEeCCCccCC
Q 031796 117 RDAVLLVFANKQDLPNA 133 (153)
Q Consensus 117 ~~~pii~v~~K~Dl~~~ 133 (153)
.+.++|+.+||.|+..+
T Consensus 265 ~nssVIlFLNKkDlLEe 281 (359)
T KOG0085|consen 265 QNSSVILFLNKKDLLEE 281 (359)
T ss_pred cCCceEEEechhhhhhh
Confidence 89999999999998643
No 323
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.66 E-value=6.6e-08 Score=71.49 Aligned_cols=63 Identities=11% Similarity=0.101 Sum_probs=40.3
Q ss_pred CeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
+..+.++||+|..+-... ....+|.++++.+....+....... ..+ ++.-++|.||+|+....
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~------E~aDIiVVNKaDl~~~~ 210 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIM------ELADLIVINKADGDNKT 210 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhh------hhhheEEeehhcccchh
Confidence 467999999997643332 3567999999977433333433321 111 22348999999987654
No 324
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.66 E-value=9.4e-08 Score=69.66 Aligned_cols=57 Identities=19% Similarity=0.359 Sum_probs=39.3
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccc--cCceeeEEEEEEEcCeEEEEEEcCCCC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQD 72 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~i~D~~g~~ 72 (153)
...++++++|.++|||||++|++.+.+.... .|.+......+.. +..+.++||||-.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL-GKGLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe-CCcEEEEECCCcC
Confidence 4568999999999999999999998775433 2222222222222 2368899999964
No 325
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=7.1e-08 Score=76.58 Aligned_cols=109 Identities=22% Similarity=0.197 Sum_probs=75.3
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccc-----cCceeeEEEEEE----------------EcCeEEEEEEcCCCCC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVE----------------YKNISFTVWDVGGQDK 73 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-----~~t~~~~~~~~~----------------~~~~~~~i~D~~g~~~ 73 (153)
-++.-|+++|...+|||-|+..+.+.+...- ...++.++.... ..---+.++||||++.
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 4556699999999999999998876543311 112222221111 1112478899999999
Q ss_pred chhcHHHhhcCCCEEEEEEECCC---cccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031796 74 IRPLWRHYFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 74 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~ 131 (153)
|..++......||.+|+|+|+-. +++...+ .+++. .+.|+|+.+||+|..
T Consensus 553 FtnlRsrgsslC~~aIlvvdImhGlepqtiESi-----~lLR~---rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 553 FTNLRSRGSSLCDLAILVVDIMHGLEPQTIESI-----NLLRM---RKTPFIVALNKIDRL 605 (1064)
T ss_pred hhhhhhccccccceEEEEeehhccCCcchhHHH-----HHHHh---cCCCeEEeehhhhhh
Confidence 99999989999999999999743 3333332 22232 589999999999964
No 326
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.65 E-value=7.6e-08 Score=69.76 Aligned_cols=56 Identities=18% Similarity=0.368 Sum_probs=38.6
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccc--cCceeeEEEEEEEcCeEEEEEEcCCC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQ 71 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~i~D~~g~ 71 (153)
...++++++|.+|+|||||+|++.+.+.... .|.+......+... ..+.++||||-
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS-DGLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC-CCEEEEECCCc
Confidence 3568999999999999999999998764432 22222222223332 36789999996
No 327
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.63 E-value=1.2e-07 Score=70.13 Aligned_cols=62 Identities=19% Similarity=0.225 Sum_probs=42.3
Q ss_pred hhhcccCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEE-cCeEEEEEEcCCC
Q 031796 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-KNISFTVWDVGGQ 71 (153)
Q Consensus 10 ~~~~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~D~~g~ 71 (153)
+........++.++|-++|||||+||++.+.+.....+..+.+-..... -...+.++||||-
T Consensus 125 ~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGi 187 (322)
T COG1161 125 KKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGI 187 (322)
T ss_pred hcCCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCCeEEecCCCc
Confidence 3333455688999999999999999999998865443333333322221 2234899999994
No 328
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.62 E-value=3.6e-07 Score=68.30 Aligned_cols=78 Identities=19% Similarity=0.131 Sum_probs=57.3
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCc-c-cccC--ceeeEEEEEEEcC-----------------eEEEEEEcCCCCC---
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEI-V-TTIP--TIGFNVETVEYKN-----------------ISFTVWDVGGQDK--- 73 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~-~-~~~~--t~~~~~~~~~~~~-----------------~~~~i~D~~g~~~--- 73 (153)
+++.++|.+++|||||++.+++... . .++| |...+...+...+ ..+.+.|+||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998765 3 2222 3445554444332 3688999999543
Q ss_pred ----chhcHHHhhcCCCEEEEEEECC
Q 031796 74 ----IRPLWRHYFQNTQGLIFVVDSN 95 (153)
Q Consensus 74 ----~~~~~~~~~~~~~~~i~v~d~~ 95 (153)
........++++|+++.|+++.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 2335566789999999999985
No 329
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.61 E-value=1.7e-07 Score=68.52 Aligned_cols=81 Identities=26% Similarity=0.361 Sum_probs=59.7
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcc-cccC--ceeeEEEEEEEc-----------------CeEEEEEEcCCCCC-
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYK-----------------NISFTVWDVGGQDK- 73 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~-~~~~--t~~~~~~~~~~~-----------------~~~~~i~D~~g~~~- 73 (153)
.+++++.++|-++||||||+|.+.+.... .+.| |+..+...+... ...+.++|++|...
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 46789999999999999999999987755 3344 454444443332 14689999998533
Q ss_pred ------chhcHHHhhcCCCEEEEEEECC
Q 031796 74 ------IRPLWRHYFQNTQGLIFVVDSN 95 (153)
Q Consensus 74 ------~~~~~~~~~~~~~~~i~v~d~~ 95 (153)
......+.++.+|+++-|+++.
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEec
Confidence 3455667789999999999864
No 330
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=3e-08 Score=74.33 Aligned_cols=128 Identities=20% Similarity=0.145 Sum_probs=93.9
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCC-----------------cccc----cCceeeEEEEEEEcCeEEEEEEcCCCCCc
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGE-----------------IVTT----IPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~-----------------~~~~----~~t~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (153)
+-.+|.++....+||||.-.|++... |... ..|+......+++.+.+++++||||+.+|
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 44789999999999999988885311 0000 12344444678889999999999999999
Q ss_pred hhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC---CHhHHHHHhCCCcc
Q 031796 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSL 148 (153)
Q Consensus 75 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~---~~~~~~~~~~~~~~ 148 (153)
+-..+.+++-.|+++.|||.+..-..+.+..|-+ . ...++|-++.+||+|...+. ..+.+.+++|...+
T Consensus 116 ~leverclrvldgavav~dasagve~qtltvwrq-a----dk~~ip~~~finkmdk~~anfe~avdsi~ekl~ak~l 187 (753)
T KOG0464|consen 116 RLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ-A----DKFKIPAHCFINKMDKLAANFENAVDSIEEKLGAKAL 187 (753)
T ss_pred EEEHHHHHHHhcCeEEEEeccCCcccceeeeehh-c----cccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCCceE
Confidence 9999999999999999999876433333333322 2 23579999999999987642 46677788876544
No 331
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.56 E-value=4.2e-07 Score=60.31 Aligned_cols=54 Identities=19% Similarity=0.300 Sum_probs=37.6
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCcc--cccC--ceeeEEEEEEEcCeEEEEEEcCC
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGG 70 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g 70 (153)
.....+++++|.+++||||++|++.+.... ...+ |.......+ +..+.++||||
T Consensus 97 ~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtPG 154 (155)
T cd01849 97 LKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL---DNKIKLLDTPG 154 (155)
T ss_pred cccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe---cCCEEEEECCC
Confidence 356788999999999999999999986532 2222 333322222 24688999998
No 332
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.56 E-value=1.1e-06 Score=64.49 Aligned_cols=64 Identities=11% Similarity=0.047 Sum_probs=40.4
Q ss_pred CeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCC
Q 031796 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (153)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~ 135 (153)
++.+.+.||+|..... ......+|.++++.+.. +-.++......+ .+.|.++|+||+|+.....
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~ 189 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQGIKAGL------MEIADIYVVNKADGEGATN 189 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHHHHHHH------hhhccEEEEEcccccchhH
Confidence 5779999999854222 23466778888875532 223333333322 2467799999999986554
No 333
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=4.4e-07 Score=65.34 Aligned_cols=129 Identities=20% Similarity=0.191 Sum_probs=79.8
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcC---C-------cc--cccC-------ceeeEEEEEEEcCeEEEEEEcCCCCCch
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLG---E-------IV--TTIP-------TIGFNVETVEYKNISFTVWDVGGQDKIR 75 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~---~-------~~--~~~~-------t~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (153)
+...||..+|.-.-|||||..++... + +. ...| |+......++.....+.-.|+||+.+|-
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv 89 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence 66799999999999999998777431 1 10 1111 2222223344455677888999999885
Q ss_pred hcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC--------CHhHHHHHhCCCc
Q 031796 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--------NAAEITDKLGLHS 147 (153)
Q Consensus 76 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~--------~~~~~~~~~~~~~ 147 (153)
.....-..+.|+.|+|+.+++..--+.....+.. ++. .-.-+++++||+|+.+.. +..++..+++++.
T Consensus 90 KNMItgAaqmDgAILVVsA~dGpmPqTrEHiLla--rqv--Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~g 165 (394)
T COG0050 90 KNMITGAAQMDGAILVVAATDGPMPQTREHILLA--RQV--GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPG 165 (394)
T ss_pred HHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhh--hhc--CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCC
Confidence 5444445678999999998874322222211111 111 123478888999999753 3455556666653
No 334
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.53 E-value=1.5e-06 Score=67.13 Aligned_cols=84 Identities=19% Similarity=0.343 Sum_probs=60.5
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcC------eEEEEEEcCCCCCchhcHHHhhcCC---
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN------ISFTVWDVGGQDKIRPLWRHYFQNT--- 85 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~------~~~~i~D~~g~~~~~~~~~~~~~~~--- 85 (153)
.....|+|+|+.++|||||+.+|.+.. ...++.+.+|...+..+ .++.+|-..|...+..+....+..-
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e--~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~ 100 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIE--DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP 100 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccC--CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence 345799999999999999999986543 34456666666554422 4789999988777766665444431
Q ss_pred -CEEEEEEECCCcccH
Q 031796 86 -QGLIFVVDSNDRDRV 100 (153)
Q Consensus 86 -~~~i~v~d~~~~~s~ 100 (153)
-++++|+|.+.+..+
T Consensus 101 ~t~vvIvlDlS~PW~~ 116 (472)
T PF05783_consen 101 NTLVVIVLDLSKPWNI 116 (472)
T ss_pred ceEEEEEecCCChHHH
Confidence 457899999988654
No 335
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.51 E-value=3.7e-07 Score=65.06 Aligned_cols=58 Identities=16% Similarity=0.143 Sum_probs=48.2
Q ss_pred CCchhcHHHhhcCCCEEEEEEECCCcc-cHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 72 DKIRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 72 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
+++..+...+++++|.+++|+|++++. ++..+..|+..... .++|+++|+||+|+...
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~ 82 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDD 82 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCC
Confidence 567777778899999999999999877 88888888775532 47999999999999653
No 336
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=2.2e-07 Score=73.94 Aligned_cols=110 Identities=16% Similarity=0.160 Sum_probs=76.2
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCC------------cc---cccCceeeEEEE--EE--EcCeEEEEEEcCCCCCch
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGE------------IV---TTIPTIGFNVET--VE--YKNISFTVWDVGGQDKIR 75 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~------------~~---~~~~t~~~~~~~--~~--~~~~~~~i~D~~g~~~~~ 75 (153)
....+++++-...-|||||+..+...+ |. +.+.+.+++... +. ..++.++++|.||+.+|.
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~ 86 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS 86 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence 455789999999999999998886432 11 122344444332 22 367899999999999999
Q ss_pred hcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCC
Q 031796 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD 129 (153)
Q Consensus 76 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~D 129 (153)
+...+..+-+|++++++|+.+.-.-+. ...+.+.. ..+...++|+||+|
T Consensus 87 sevssas~l~d~alvlvdvvegv~~qt-~~vlrq~~----~~~~~~~lvinkid 135 (887)
T KOG0467|consen 87 SEVSSASRLSDGALVLVDVVEGVCSQT-YAVLRQAW----IEGLKPILVINKID 135 (887)
T ss_pred hhhhhhhhhcCCcEEEEeeccccchhH-HHHHHHHH----HccCceEEEEehhh
Confidence 999999999999999999864322111 11122211 12567899999999
No 337
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.49 E-value=5e-06 Score=58.55 Aligned_cols=84 Identities=17% Similarity=0.113 Sum_probs=53.7
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcC--Ccccc----cCceeeEEEEEEE---cCeEEEEEEcCCCCCchh------cHHH
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLG--EIVTT----IPTIGFNVETVEY---KNISFTVWDVGGQDKIRP------LWRH 80 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~--~~~~~----~~t~~~~~~~~~~---~~~~~~i~D~~g~~~~~~------~~~~ 80 (153)
+..-|.++|++++|||+|+|++++. .|... ..|.++-...... .+..+.++||+|...... ....
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence 3456889999999999999999998 55411 2244444333332 357899999999654322 1122
Q ss_pred hhcC--CCEEEEEEECCCccc
Q 031796 81 YFQN--TQGLIFVVDSNDRDR 99 (153)
Q Consensus 81 ~~~~--~~~~i~v~d~~~~~s 99 (153)
.+.. ++.+|+..+......
T Consensus 86 ~l~~llss~~i~n~~~~~~~~ 106 (224)
T cd01851 86 ALATLLSSVLIYNSWETILGD 106 (224)
T ss_pred HHHHHHhCEEEEeccCcccHH
Confidence 2233 688888887654433
No 338
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.47 E-value=5.2e-07 Score=76.79 Aligned_cols=110 Identities=19% Similarity=0.218 Sum_probs=64.0
Q ss_pred EEEEcCCCCCHHHHHHhHhcCCccccc-----CceeeE-EEEEE-EcCeEEEEEEcCCCC--------CchhcHHHhh--
Q 031796 20 ILMVGLDAAGKTTILYKLKLGEIVTTI-----PTIGFN-VETVE-YKNISFTVWDVGGQD--------KIRPLWRHYF-- 82 (153)
Q Consensus 20 i~v~G~~~~GKSsli~~~~~~~~~~~~-----~t~~~~-~~~~~-~~~~~~~i~D~~g~~--------~~~~~~~~~~-- 82 (153)
.+++|++|+||||++++- +..++-.. .+.+.. ....+ +-.-+-.++||+|.. .....|..++
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~~ 192 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLGL 192 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCCEEEEcCCCccccCCCcccccHHHHHHHHHH
Confidence 689999999999999876 55544211 111110 00111 112356789999932 1223344333
Q ss_pred -------cCCCEEEEEEECCCccc-----H----HHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031796 83 -------QNTQGLIFVVDSNDRDR-----V----VEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 83 -------~~~~~~i~v~d~~~~~s-----~----~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~ 131 (153)
+..|++|+++|+.+.-. . ..+...+.++. .......||.++.||||+.
T Consensus 193 L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~-~~lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 193 LRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELR-EQLGARFPVYLVLTKADLL 256 (1169)
T ss_pred HHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHH-HHhCCCCCEEEEEecchhh
Confidence 35899999999754321 1 22333333332 2233589999999999986
No 339
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.45 E-value=1.1e-06 Score=62.76 Aligned_cols=114 Identities=15% Similarity=0.168 Sum_probs=68.8
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEEEEEE--EcCeEEEEEEcCCC----------CCchhcHHHh
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVE--YKNISFTVWDVGGQ----------DKIRPLWRHY 81 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~~~~~--~~~~~~~i~D~~g~----------~~~~~~~~~~ 81 (153)
.+...++++|.+++|||||++.+...+.... .....-....++ .-+..+.+.|.||- .++......+
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y 213 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSY 213 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHHH
Confidence 5668999999999999999999987654311 111111112222 23357888999991 2333444444
Q ss_pred hc---CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 82 FQ---NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 82 ~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
+- +.-.+++++|++-+ +........+++.+ .+.|..+|.||||....
T Consensus 214 ~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k~ 263 (320)
T KOG2486|consen 214 LLERENLVRVFLLVDASVP--IQPTDNPEIAWLGE---NNVPMTSVFTKCDKQKK 263 (320)
T ss_pred HHhhhhhheeeeeeeccCC--CCCCChHHHHHHhh---cCCCeEEeeehhhhhhh
Confidence 43 33455667776543 22222223333333 58999999999998643
No 340
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=3.6e-06 Score=63.56 Aligned_cols=118 Identities=17% Similarity=0.047 Sum_probs=81.3
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCCcc--cc----cCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEE
Q 031796 19 RILMVGLDAAGKTTILYKLKLGEIV--TT----IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~~~--~~----~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (153)
-|...|.-.-|||||++.+.+..-. +. ..|++..+......+..+.+.|.||++++-.....-+...|..++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 4677899999999999999876432 11 23566666666667789999999999988777676778899999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHH
Q 031796 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEIT 140 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~ 140 (153)
|+++.-. ........++... .....++|+||+|..+....++..
T Consensus 82 ~~deGl~--~qtgEhL~iLdll--gi~~giivltk~D~~d~~r~e~~i 125 (447)
T COG3276 82 AADEGLM--AQTGEHLLILDLL--GIKNGIIVLTKADRVDEARIEQKI 125 (447)
T ss_pred eCccCcc--hhhHHHHHHHHhc--CCCceEEEEeccccccHHHHHHHH
Confidence 9854322 2222222222221 134479999999999765444433
No 341
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.39 E-value=1.5e-06 Score=57.92 Aligned_cols=63 Identities=17% Similarity=0.252 Sum_probs=36.4
Q ss_pred eEEEEEEcCCCCCchhcHHHh--------hcCCCEEEEEEECCCcccHHH-HHHHHHHHHcCCCCCCceEEEEEeCCCc
Q 031796 61 ISFTVWDVGGQDKIRPLWRHY--------FQNTQGLIFVVDSNDRDRVVE-ARDELHRMLNEDELRDAVLLVFANKQDL 130 (153)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~pii~v~~K~Dl 130 (153)
....+.|+||-.+-....... .-+++.+++++|+.+...... ......++ .. . =++|.||+|+
T Consensus 87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi-~~---a---d~ivlnk~dl 158 (158)
T cd03112 87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQI-AF---A---DRILLNKTDL 158 (158)
T ss_pred CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHH-HH---C---CEEEEecccC
Confidence 467888999976554443322 234789999999765333221 11122222 21 1 2668899996
No 342
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.37 E-value=7.3e-07 Score=64.98 Aligned_cols=115 Identities=19% Similarity=0.202 Sum_probs=73.7
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCCcccc---cCceeeEEEEEEEc-CeEEEEEEcCCCC---------CchhcHHHhhc
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYK-NISFTVWDVGGQD---------KIRPLWRHYFQ 83 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~i~D~~g~~---------~~~~~~~~~~~ 83 (153)
.--|.++|-+++|||||++++......+. ..|...+....... +..+.+-||-|-- .|.+. ...+.
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~AT-LeeVa 256 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQAT-LEEVA 256 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHH-HHHHh
Confidence 34589999999999999999986554432 34555555555543 3556667999942 12222 33456
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCce----EEEEEeCCCccCC
Q 031796 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV----LLVFANKQDLPNA 133 (153)
Q Consensus 84 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p----ii~v~~K~Dl~~~ 133 (153)
.+|.++.|.|++.|.--......+.- ++....+..| ++=|-||+|....
T Consensus 257 eadlllHvvDiShP~ae~q~e~Vl~v-L~~igv~~~pkl~~mieVdnkiD~e~~ 309 (410)
T KOG0410|consen 257 EADLLLHVVDISHPNAEEQRETVLHV-LNQIGVPSEPKLQNMIEVDNKIDYEED 309 (410)
T ss_pred hcceEEEEeecCCccHHHHHHHHHHH-HHhcCCCcHHHHhHHHhhccccccccc
Confidence 79999999999998655444444333 2333323233 5567788887643
No 343
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=5.2e-06 Score=61.24 Aligned_cols=111 Identities=21% Similarity=0.218 Sum_probs=65.6
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcc---cccC---ceeeEE----EEE---------EEcCeEEEEEEcCCCCCch
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV---TTIP---TIGFNV----ETV---------EYKNISFTVWDVGGQDKIR 75 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~---~~~~---t~~~~~----~~~---------~~~~~~~~i~D~~g~~~~~ 75 (153)
..++++.++|...||||||.+++..-... +..| +.++.. ..+ +...+.+.+.|+||+...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 44599999999999999999998643211 1111 122211 111 1234678999999998654
Q ss_pred hcHHHhhcCCCEEEEEEECCCcccH-HHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031796 76 PLWRHYFQNTQGLIFVVDSNDRDRV-VEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 76 ~~~~~~~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~ 131 (153)
.....-.+-.|..++|+|+...-.- .+..-.+.+.+ ....|+|.||+|.-
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~------c~klvvvinkid~l 135 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL------CKKLVVVINKIDVL 135 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh------ccceEEEEeccccc
Confidence 4444444556889999998643211 11111222222 23367777887764
No 344
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.34 E-value=7e-07 Score=59.42 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGE 41 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~ 41 (153)
-.++++|++|||||||+|++.+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 678999999999999999999874
No 345
>PRK12288 GTPase RsgA; Reviewed
Probab=98.34 E-value=1.8e-06 Score=64.48 Aligned_cols=53 Identities=15% Similarity=0.171 Sum_probs=34.3
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCCcccc--c---------CceeeEEEEEEEcCeEEEEEEcCCCCCc
Q 031796 19 RILMVGLDAAGKTTILYKLKLGEIVTT--I---------PTIGFNVETVEYKNISFTVWDVGGQDKI 74 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~~~~~--~---------~t~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (153)
.++++|.+|||||||+|++.+.....+ . .|+..+...+... ..++||||-.++
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~ 270 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREF 270 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCcc
Confidence 378999999999999999997653321 1 1223333333222 248999996654
No 346
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.34 E-value=6.9e-07 Score=63.91 Aligned_cols=118 Identities=17% Similarity=0.289 Sum_probs=74.1
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCcccc-----cCceeeEEEEEEEcC----eEEEEEEcCCC-------CCchhc--
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEYKN----ISFTVWDVGGQ-------DKIRPL-- 77 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-----~~t~~~~~~~~~~~~----~~~~i~D~~g~-------~~~~~~-- 77 (153)
=.++|+-+|++|.|||||+.+++|.++... .|+......+++.+. +++.+.||.|- ++|..+
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd 120 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD 120 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence 358999999999999999999999987633 344445444444432 68899999992 223222
Q ss_pred -----HHHhh---------------cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHh
Q 031796 78 -----WRHYF---------------QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA 137 (153)
Q Consensus 78 -----~~~~~---------------~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~ 137 (153)
...|+ .++|+.+|.+..+. -++..+....-.-+. .+..||.|+-|.|-....+..
T Consensus 121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~Ld----skVNIIPvIAKaDtisK~eL~ 195 (406)
T KOG3859|consen 121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKLD----SKVNIIPVIAKADTISKEELK 195 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHHh----hhhhhHHHHHHhhhhhHHHHH
Confidence 11111 24677788887763 345444433333223 356688888888876554433
Q ss_pred H
Q 031796 138 E 138 (153)
Q Consensus 138 ~ 138 (153)
.
T Consensus 196 ~ 196 (406)
T KOG3859|consen 196 R 196 (406)
T ss_pred H
Confidence 3
No 347
>PRK12289 GTPase RsgA; Reviewed
Probab=98.32 E-value=1.6e-06 Score=64.76 Aligned_cols=23 Identities=17% Similarity=0.340 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCC
Q 031796 19 RILMVGLDAAGKTTILYKLKLGE 41 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~ 41 (153)
.++++|++|||||||+|++.+..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcc
Confidence 48999999999999999998764
No 348
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.30 E-value=3e-06 Score=60.47 Aligned_cols=63 Identities=16% Similarity=0.195 Sum_probs=39.2
Q ss_pred HHHHHhhhcccCccEEEEEcCCCCCHHHHHHhHhcCCcccc--c---------CceeeEEEEEEEcCeEEEEEEcCCCCC
Q 031796 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT--I---------PTIGFNVETVEYKNISFTVWDVGGQDK 73 (153)
Q Consensus 5 ~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~--~---------~t~~~~~~~~~~~~~~~~i~D~~g~~~ 73 (153)
+..+++... ...++++|.+|+|||||+|++.+.....+ . .|+..+.... . .-.++||||-..
T Consensus 111 i~eLf~~l~---~~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~--~~~liDtPG~~~ 183 (245)
T TIGR00157 111 LKELIEALQ---NRISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--H--GGLIADTPGFNE 183 (245)
T ss_pred HHHHHhhhc---CCEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--C--CcEEEeCCCccc
Confidence 444554332 24789999999999999999987643211 0 2333333333 2 237899999654
Q ss_pred c
Q 031796 74 I 74 (153)
Q Consensus 74 ~ 74 (153)
+
T Consensus 184 ~ 184 (245)
T TIGR00157 184 F 184 (245)
T ss_pred c
Confidence 3
No 349
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=1.4e-05 Score=63.33 Aligned_cols=119 Identities=16% Similarity=0.330 Sum_probs=74.2
Q ss_pred HhhhcccCccEEEEEcCCCCCHHHHHHhHhcCCcccc--cCceeeEE---------------------------------
Q 031796 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNV--------------------------------- 53 (153)
Q Consensus 9 ~~~~~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~--~~t~~~~~--------------------------------- 53 (153)
..+...+...||++.|..+.||||++|+++-.+..+. .+++..-.
T Consensus 101 i~~~l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL 180 (749)
T KOG0448|consen 101 IDEVLARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHAL 180 (749)
T ss_pred HHHHHhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhc
Confidence 4455668889999999999999999999987654321 12111100
Q ss_pred -----------EEEEEc-C------eEEEEEEcCCCC---CchhcHHHhhcCCCEEEEEEECCCcccHHHHH-HHHHHHH
Q 031796 54 -----------ETVEYK-N------ISFTVWDVGGQD---KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR-DELHRML 111 (153)
Q Consensus 54 -----------~~~~~~-~------~~~~i~D~~g~~---~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~ 111 (153)
..+-+. + -.+.+.|.||-+ ...+-...+..++|++++|.++- .++.... ..+....
T Consensus 181 ~~~~~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaE--ntlt~sek~Ff~~vs 258 (749)
T KOG0448|consen 181 KPDKDLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAE--NTLTLSEKQFFHKVS 258 (749)
T ss_pred CcccccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCc--cHhHHHHHHHHHHhh
Confidence 000000 0 137788888854 34555567778999999999984 3444333 3333332
Q ss_pred cCCCCCCceEEEEEeCCCccCC
Q 031796 112 NEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 112 ~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
++ ++.+.++-||.|....
T Consensus 259 ~~----KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 259 EE----KPNIFILNNKWDASAS 276 (749)
T ss_pred cc----CCcEEEEechhhhhcc
Confidence 22 4456666788898754
No 350
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.21 E-value=2.7e-05 Score=60.73 Aligned_cols=79 Identities=16% Similarity=0.310 Sum_probs=53.8
Q ss_pred EEEEEEcCCC-------------CCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCC
Q 031796 62 SFTVWDVGGQ-------------DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128 (153)
Q Consensus 62 ~~~i~D~~g~-------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~ 128 (153)
++.+.|.||- +...++...++.+.+++|+|+.- .|.++.......++..........|+|+||.
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQD---GSVDAERSnVTDLVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQD---GSVDAERSIVTDLVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEecc---CCcchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence 5888999992 22345567889999999999863 3344444445555555555567799999999
Q ss_pred CccCC--CCHhHHHHHh
Q 031796 129 DLPNA--MNAAEITDKL 143 (153)
Q Consensus 129 Dl~~~--~~~~~~~~~~ 143 (153)
|+... .++..+.+.+
T Consensus 490 DlAEknlA~PdRI~kIl 506 (980)
T KOG0447|consen 490 DLAEKNVASPSRIQQII 506 (980)
T ss_pred chhhhccCCHHHHHHHH
Confidence 99765 3455555443
No 351
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.20 E-value=1.8e-06 Score=66.79 Aligned_cols=112 Identities=18% Similarity=0.284 Sum_probs=83.4
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeE---EEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN---VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~---~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 91 (153)
-..+|+.++|..++|||+++++++.+.+...+.+.+.. ...+..+...+.+.|-+|.. -..+...+|++|||
T Consensus 28 ipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIfv 102 (749)
T KOG0705|consen 28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVFV 102 (749)
T ss_pred cchhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCc-----hhhhhhhccceEEE
Confidence 45689999999999999999999988877554433332 34455666777778877622 23455678999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031796 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~ 131 (153)
|..-+..+|+.+.......-.......+|+++++++.-..
T Consensus 103 f~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS 142 (749)
T KOG0705|consen 103 FSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHIS 142 (749)
T ss_pred EEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhh
Confidence 9999999999988777766443345678999999886543
No 352
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.18 E-value=3.5e-05 Score=58.96 Aligned_cols=109 Identities=21% Similarity=0.150 Sum_probs=61.3
Q ss_pred ccEEEEEcCCCCCHHHHHHhHh------cCCcc--c--ccC------------ceeeEEEEEE-E---------------
Q 031796 17 EMRILMVGLDAAGKTTILYKLK------LGEIV--T--TIP------------TIGFNVETVE-Y--------------- 58 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~------~~~~~--~--~~~------------t~~~~~~~~~-~--------------- 58 (153)
+.-++++|++||||||++..+. +.+.. . +.. ..++.+.... .
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 4568999999999999988874 22210 0 000 0111111110 0
Q ss_pred -cCeEEEEEEcCCCCCchhcHHHh------hcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031796 59 -KNISFTVWDVGGQDKIRPLWRHY------FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 59 -~~~~~~i~D~~g~~~~~~~~~~~------~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~ 131 (153)
.++.+.++||+|........-.. ..+.+-+++|+|++-.+........+.+. -.+--+|+||.|..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~-------~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDS-------VDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhc-------cCCcEEEEECccCC
Confidence 24689999999976543222111 12467899999986543333332222221 23567778999975
Q ss_pred C
Q 031796 132 N 132 (153)
Q Consensus 132 ~ 132 (153)
.
T Consensus 253 a 253 (429)
T TIGR01425 253 A 253 (429)
T ss_pred C
Confidence 3
No 353
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.18 E-value=3.7e-06 Score=63.25 Aligned_cols=55 Identities=16% Similarity=0.361 Sum_probs=36.2
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCCc-----c--cccCceeeEEEEEEEcCeEEEEEEcCCCC
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGEI-----V--TTIPTIGFNVETVEYKNISFTVWDVGGQD 72 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~~-----~--~~~~t~~~~~~~~~~~~~~~~i~D~~g~~ 72 (153)
..++.++|.+|||||||+|++++... . +..|.+......+.. +-.+.++||||-.
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~-~~~~~l~DtPG~~ 215 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL-DDGHSLYDTPGII 215 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe-CCCCEEEECCCCC
Confidence 46999999999999999999987532 1 222322222333332 1235799999954
No 354
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.16 E-value=2.3e-05 Score=51.87 Aligned_cols=25 Identities=36% Similarity=0.585 Sum_probs=22.0
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhc
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
+..+|+++.|++||||||++.++.+
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHH
Confidence 4568999999999999999988864
No 355
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.16 E-value=1.2e-05 Score=58.26 Aligned_cols=75 Identities=15% Similarity=0.153 Sum_probs=46.7
Q ss_pred eEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCC-HhHH
Q 031796 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEI 139 (153)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~-~~~~ 139 (153)
+.+.|+.|.|--+-+... .+-+|.+++|.-..--+..+.++.-+.++ -=++|.||.|.+.++. ..++
T Consensus 144 ~DvIIVETVGvGQsev~I---~~~aDt~~~v~~pg~GD~~Q~iK~GimEi---------aDi~vINKaD~~~A~~a~r~l 211 (323)
T COG1703 144 YDVIIVETVGVGQSEVDI---ANMADTFLVVMIPGAGDDLQGIKAGIMEI---------ADIIVINKADRKGAEKAAREL 211 (323)
T ss_pred CCEEEEEecCCCcchhHH---hhhcceEEEEecCCCCcHHHHHHhhhhhh---------hheeeEeccChhhHHHHHHHH
Confidence 568888888755443332 34578888888765555666665544443 3488899999776543 3445
Q ss_pred HHHhCCCc
Q 031796 140 TDKLGLHS 147 (153)
Q Consensus 140 ~~~~~~~~ 147 (153)
...+.+..
T Consensus 212 ~~al~~~~ 219 (323)
T COG1703 212 RSALDLLR 219 (323)
T ss_pred HHHHHhhc
Confidence 55555443
No 356
>PRK13796 GTPase YqeH; Provisional
Probab=98.13 E-value=9.2e-06 Score=61.21 Aligned_cols=55 Identities=15% Similarity=0.330 Sum_probs=34.3
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCc-----c--cccCceeeEEEEEEEcCeEEEEEEcCCC
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEI-----V--TTIPTIGFNVETVEYKNISFTVWDVGGQ 71 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~-----~--~~~~t~~~~~~~~~~~~~~~~i~D~~g~ 71 (153)
...++.++|.+|||||||+|++..... . +..|-+......+...+ ...++||||-
T Consensus 159 ~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~-~~~l~DTPGi 220 (365)
T PRK13796 159 EGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD-GSFLYDTPGI 220 (365)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC-CcEEEECCCc
Confidence 346899999999999999999985431 1 12222222222222211 2479999995
No 357
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.12 E-value=1.2e-05 Score=58.70 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCc
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEI 42 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~ 42 (153)
..++++|++|+|||||+|++.+...
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~ 186 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLD 186 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhh
Confidence 6799999999999999999987653
No 358
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.11 E-value=8.4e-05 Score=56.01 Aligned_cols=118 Identities=15% Similarity=0.178 Sum_probs=62.3
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCccc----c-----cCc---------------eeeEEEEE-----------EEcC
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT----T-----IPT---------------IGFNVETV-----------EYKN 60 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~~----~-----~~t---------------~~~~~~~~-----------~~~~ 60 (153)
+.-.++++|++|+||||++.++...-... . ..+ .+...... ...+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 34678999999999999998885421000 0 000 01111111 1134
Q ss_pred eEEEEEEcCCCCCchhcHHHh---hc---CCCEEEEEEECCCc-ccHHHHHHHHHHHHcCCCCCC-ceEEEEEeCCCccC
Q 031796 61 ISFTVWDVGGQDKIRPLWRHY---FQ---NTQGLIFVVDSNDR-DRVVEARDELHRMLNEDELRD-AVLLVFANKQDLPN 132 (153)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~---~~---~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~-~pii~v~~K~Dl~~ 132 (153)
..+.++||+|........... +. ...-.++|++++.. +...+....+..........- .+-=+|.||.|...
T Consensus 216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~ 295 (374)
T PRK14722 216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS 295 (374)
T ss_pred CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC
Confidence 578999999976553332221 22 23456889998653 334444444444322211110 12345668888764
Q ss_pred C
Q 031796 133 A 133 (153)
Q Consensus 133 ~ 133 (153)
.
T Consensus 296 ~ 296 (374)
T PRK14722 296 N 296 (374)
T ss_pred C
Confidence 3
No 359
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.11 E-value=4.9e-06 Score=59.19 Aligned_cols=108 Identities=16% Similarity=0.214 Sum_probs=58.5
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcC------Ccc-----cccCcee------------------eEEEEEEE-------
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLG------EIV-----TTIPTIG------------------FNVETVEY------- 58 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~------~~~-----~~~~t~~------------------~~~~~~~~------- 58 (153)
.+...|.+.|++|+|||||+.++... +.. ++.|.++ .-...+-.
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 46689999999999999999888531 100 1111111 11111111
Q ss_pred -------------cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEE
Q 031796 59 -------------KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFA 125 (153)
Q Consensus 59 -------------~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~ 125 (153)
.++.+.+..|.|--+-+.. ...-+|.+++|....--+..+.++.-+.++ .=++|.
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~---I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi---------aDi~vV 174 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEVD---IADMADTVVLVLVPGLGDEIQAIKAGIMEI---------ADIFVV 174 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHHHH---HHTTSSEEEEEEESSTCCCCCTB-TTHHHH----------SEEEE
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccHHH---HHHhcCeEEEEecCCCccHHHHHhhhhhhh---------ccEEEE
Confidence 2356888888875433332 245689999999875555554444433333 347888
Q ss_pred eCCCccCCC
Q 031796 126 NKQDLPNAM 134 (153)
Q Consensus 126 ~K~Dl~~~~ 134 (153)
||.|.+.+.
T Consensus 175 NKaD~~gA~ 183 (266)
T PF03308_consen 175 NKADRPGAD 183 (266)
T ss_dssp E--SHHHHH
T ss_pred eCCChHHHH
Confidence 999976544
No 360
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.10 E-value=5.8e-05 Score=52.09 Aligned_cols=66 Identities=11% Similarity=0.089 Sum_probs=36.1
Q ss_pred eEEEEEEcCCCCCchhcH----HHhh--cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 61 ISFTVWDVGGQDKIRPLW----RHYF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~----~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
..+.++||+|........ ..+. ...+-+++|++++....-........... ++ -=++.||.|....
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~------~~-~~lIlTKlDet~~ 155 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF------GI-DGLILTKLDETAR 155 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS------ST-CEEEEESTTSSST
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc------cC-ceEEEEeecCCCC
Confidence 569999999977653321 1121 14678999999875433222221122211 11 2455799997654
No 361
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.08 E-value=8.3e-05 Score=55.05 Aligned_cols=24 Identities=46% Similarity=0.617 Sum_probs=19.9
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhc
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
...-++++|++|+||||++..+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 346788999999999999887743
No 362
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.07 E-value=6.5e-06 Score=59.77 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHhHhcC
Q 031796 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~ 40 (153)
..+++|.+|||||||+|++...
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCch
Confidence 7889999999999999999864
No 363
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.05 E-value=4.8e-06 Score=57.39 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=19.6
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhc
Q 031796 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
++-.+|+||.||||||+.+.+..
T Consensus 3 ~ya~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 3 RYAQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred ceeEEEEccCCCCcchHHHHHHH
Confidence 46689999999999999988753
No 364
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=1.3e-05 Score=62.84 Aligned_cols=115 Identities=18% Similarity=0.140 Sum_probs=81.6
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCC-----cc------------c----ccCceeeEEEEEEEcCeEEEEEEcCCCCC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGE-----IV------------T----TIPTIGFNVETVEYKNISFTVWDVGGQDK 73 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~-----~~------------~----~~~t~~~~~~~~~~~~~~~~i~D~~g~~~ 73 (153)
.+..+|-+.-...+||||+-++.+... +. + ...|+......+.+...+++++||||+.+
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 345778888899999999988875321 00 0 01133333345667789999999999999
Q ss_pred chhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 74 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
|.-..+..++-.|+.++++|....-.- .....|.+..+ .+.|.+...||+|.-.+.
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GVqs-Qt~tV~rQ~~r----y~vP~i~FiNKmDRmGa~ 172 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGVES-QTETVWRQMKR----YNVPRICFINKMDRMGAS 172 (721)
T ss_pred EEEEehhhhhhccCeEEEEEcccceeh-hhHHHHHHHHh----cCCCeEEEEehhhhcCCC
Confidence 988888889999999999997543222 22334444433 379999999999987664
No 365
>PRK14974 cell division protein FtsY; Provisional
Probab=98.04 E-value=0.00012 Score=54.48 Aligned_cols=67 Identities=19% Similarity=0.202 Sum_probs=38.2
Q ss_pred CeEEEEEEcCCCCCchhcH----HHhh--cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 60 NISFTVWDVGGQDKIRPLW----RHYF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~----~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
+..+.++||+|........ .... -+.|.+++|+|++..+........+... -.+--+|.||.|....
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~-------~~~~giIlTKlD~~~~ 294 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEA-------VGIDGVILTKVDADAK 294 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhc-------CCCCEEEEeeecCCCC
Confidence 3568999999976542221 1111 2468889999986543322222222221 1224677799998644
No 366
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.03 E-value=0.00022 Score=47.99 Aligned_cols=80 Identities=18% Similarity=0.170 Sum_probs=44.6
Q ss_pred CeEEEEEEcCCCCCchhcH----HHh--hcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 60 NISFTVWDVGGQDKIRPLW----RHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~----~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
+..+.+.|++|........ ..+ ....+.+++|+|........ .......+.. + ..-+|.||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~---~~~~~~~~~~---~-~~~viltk~D~~~~ 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAV---NQAKAFNEAL---G-ITGVILTKLDGDAR 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHH---HHHHHHHhhC---C-CCEEEEECCcCCCC
Confidence 3568899999975432211 111 12479999999986543322 2333332221 2 25677799998754
Q ss_pred CC-HhHHHHHhCCC
Q 031796 134 MN-AAEITDKLGLH 146 (153)
Q Consensus 134 ~~-~~~~~~~~~~~ 146 (153)
.. .-.+++..+++
T Consensus 155 ~g~~~~~~~~~~~p 168 (173)
T cd03115 155 GGAALSIRAVTGKP 168 (173)
T ss_pred cchhhhhHHHHCcC
Confidence 32 33355555544
No 367
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.03 E-value=0.00024 Score=51.48 Aligned_cols=80 Identities=14% Similarity=0.142 Sum_probs=44.0
Q ss_pred cCeEEEEEEcCCCCCchhcHH-------Hhhc-----CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEe
Q 031796 59 KNISFTVWDVGGQDKIRPLWR-------HYFQ-----NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126 (153)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~-------~~~~-----~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~ 126 (153)
.++.+.++||||........- ...+ ..|.+++|+|++... ..+. ....+.+.. .+--+|.|
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~-~~~~f~~~~----~~~g~IlT 225 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALE-QAKVFNEAV----GLTGIILT 225 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHH-HHHHHHhhC----CCCEEEEE
Confidence 346899999999765433321 1111 378999999987432 2221 112222211 23577889
Q ss_pred CCCccCCCC-HhHHHHHhCC
Q 031796 127 KQDLPNAMN-AAEITDKLGL 145 (153)
Q Consensus 127 K~Dl~~~~~-~~~~~~~~~~ 145 (153)
|.|...... .-.+....++
T Consensus 226 KlDe~~~~G~~l~~~~~~~~ 245 (272)
T TIGR00064 226 KLDGTAKGGIILSIAYELKL 245 (272)
T ss_pred ccCCCCCccHHHHHHHHHCc
Confidence 999865432 3334444443
No 368
>PRK00098 GTPase RsgA; Reviewed
Probab=97.99 E-value=1.5e-05 Score=58.50 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCCc
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGEI 42 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~~ 42 (153)
...++++|++|+|||||+|++.+...
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcC
Confidence 35789999999999999999987643
No 369
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.97 E-value=9.2e-05 Score=53.95 Aligned_cols=112 Identities=12% Similarity=0.106 Sum_probs=65.8
Q ss_pred HHHHHhhhcccCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCCC------------
Q 031796 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQD------------ 72 (153)
Q Consensus 5 ~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~------------ 72 (153)
+..++......+.-+++++|++|.|||+++++|.....+...+. .....+....+|...
T Consensus 49 L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~---------~~~~PVv~vq~P~~p~~~~~Y~~IL~~ 119 (302)
T PF05621_consen 49 LEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDED---------AERIPVVYVQMPPEPDERRFYSAILEA 119 (302)
T ss_pred HHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCC---------CccccEEEEecCCCCChHHHHHHHHHH
Confidence 34456655556668899999999999999999987653321110 112244455555411
Q ss_pred ------------CchhcHHHhhcCCCEEEEEEECCCc---ccHHH---HHHHHHHHHcCCCCCCceEEEEEeCC
Q 031796 73 ------------KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVE---ARDELHRMLNEDELRDAVLLVFANKQ 128 (153)
Q Consensus 73 ------------~~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~---~~~~~~~~~~~~~~~~~pii~v~~K~ 128 (153)
.........++....-++++|--.. .+..+ ....+..+-+ .-++|+|.||++-
T Consensus 120 lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~N---eL~ipiV~vGt~~ 190 (302)
T PF05621_consen 120 LGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGN---ELQIPIVGVGTRE 190 (302)
T ss_pred hCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhh---ccCCCeEEeccHH
Confidence 1123344667888999999994211 12222 2222222222 2579999999764
No 370
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.95 E-value=0.00012 Score=55.57 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhc
Q 031796 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
.+-+.|+||..+|||||++||..
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMe 39 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFME 39 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHH
Confidence 47899999999999999999964
No 371
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=2.5e-05 Score=66.02 Aligned_cols=111 Identities=18% Similarity=0.214 Sum_probs=62.9
Q ss_pred EEEEcCCCCCHHHHHHhHhcCCccccc-----CceeeEEEEEE-EcCeEEEEEEcCCCC--------CchhcHHHh----
Q 031796 20 ILMVGLDAAGKTTILYKLKLGEIVTTI-----PTIGFNVETVE-YKNISFTVWDVGGQD--------KIRPLWRHY---- 81 (153)
Q Consensus 20 i~v~G~~~~GKSsli~~~~~~~~~~~~-----~t~~~~~~~~~-~~~~~~~i~D~~g~~--------~~~~~~~~~---- 81 (153)
-+|+|++|+||||++.. .+.+|+-.. ..........+ +-.-.-.++||.|.. .-...|..+
T Consensus 128 y~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lL 206 (1188)
T COG3523 128 YMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLL 206 (1188)
T ss_pred eEEecCCCCCcchHHhc-ccccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHHH
Confidence 58899999999999854 344444111 11111111111 122466788999832 123333333
Q ss_pred -----hcCCCEEEEEEECCCcccH---------HHHHHHHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 82 -----FQNTQGLIFVVDSNDRDRV---------VEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 82 -----~~~~~~~i~v~d~~~~~s~---------~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
.+..|+|++.+|+++.-+- ..+...+.++ ...-....||++++||.|+-.
T Consensus 207 kk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El-~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 207 KKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQEL-RETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHH-HHhhccCCceEEEEecccccc
Confidence 3468999999997543221 1122223332 333335899999999999864
No 372
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.92 E-value=0.00033 Score=44.90 Aligned_cols=35 Identities=23% Similarity=0.211 Sum_probs=26.1
Q ss_pred HHHHhhhcccCccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 6 TKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 6 ~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
..+...........+++.|++|+|||++++.+.+.
T Consensus 8 ~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 8 EALREALELPPPKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 33444433445677999999999999999998765
No 373
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.89 E-value=4.9e-05 Score=51.62 Aligned_cols=68 Identities=19% Similarity=0.172 Sum_probs=40.3
Q ss_pred eEEEEEEcCCCCCchhcH--H---HhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 61 ISFTVWDVGGQDKIRPLW--R---HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~--~---~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
....++.+.|........ . ...-..+.++.|+|+.+..........+..-+... =++++||+|+..+.
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A------DvIvlnK~D~~~~~ 157 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFA------DVIVLNKIDLVSDE 157 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-------SEEEEE-GGGHHHH
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhc------CEEEEeccccCChh
Confidence 467778888865444441 1 11224689999999876543444444444444432 27888999998765
No 374
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=2.6e-05 Score=57.09 Aligned_cols=119 Identities=20% Similarity=0.140 Sum_probs=69.6
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccc----cC--ceeeEEE--------------EEEE------------cCeE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT----IP--TIGFNVE--------------TVEY------------KNIS 62 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~----~~--t~~~~~~--------------~~~~------------~~~~ 62 (153)
+...+|.++|.-.-||||+.+++.+-..... .. |+..-+. .+.. --..
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 5679999999999999999999976321100 00 1100000 0000 0135
Q ss_pred EEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCH
Q 031796 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA 136 (153)
Q Consensus 63 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~ 136 (153)
+.+.|.||++-.-+...+-..--|+.++|+++.++..--+-...+..+ .-. .-..+|++=||+|+...+.+
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Al-eIi--gik~iiIvQNKIDlV~~E~A 158 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMAL-EII--GIKNIIIVQNKIDLVSRERA 158 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHH-hhh--ccceEEEEecccceecHHHH
Confidence 788899999854333332223359999999988764332222222221 111 12458999999999876543
No 375
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.87 E-value=1.8e-05 Score=50.60 Aligned_cols=97 Identities=16% Similarity=0.191 Sum_probs=51.1
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCC------------------------C
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ------------------------D 72 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~------------------------~ 72 (153)
..-+++.|++|+|||++++++.............. .+...+.+.. .
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 73 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHP----------DVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSD 73 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCE----------EEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCC----------cEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHH
Confidence 45578999999999999999976532110000011 1111121110 1
Q ss_pred CchhcHHHhhcCCCEEEEEEECCCcc-cHHHHHHHHHHHHcCCCCCCceEEEEEeC
Q 031796 73 KIRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANK 127 (153)
Q Consensus 73 ~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~pii~v~~K 127 (153)
.........+++....++++|-.+.- + .+....+..+.+ ..++++|++|+-
T Consensus 74 ~l~~~~~~~l~~~~~~~lviDe~~~l~~-~~~l~~l~~l~~---~~~~~vvl~G~~ 125 (131)
T PF13401_consen 74 ELRSLLIDALDRRRVVLLVIDEADHLFS-DEFLEFLRSLLN---ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHHHHCTEEEEEEETTHHHHT-HHHHHHHHHHTC---SCBEEEEEEESS
T ss_pred HHHHHHHHHHHhcCCeEEEEeChHhcCC-HHHHHHHHHHHh---CCCCeEEEEECh
Confidence 11223344455566689999975542 2 333444444444 468999999876
No 376
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.87 E-value=0.00024 Score=42.51 Aligned_cols=97 Identities=20% Similarity=0.114 Sum_probs=54.7
Q ss_pred EEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCCCCchhc-HHHhhcCCCEEEEEEECCCcc
Q 031796 20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL-WRHYFQNTQGLIFVVDSNDRD 98 (153)
Q Consensus 20 i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~~~~i~v~d~~~~~ 98 (153)
+++.|..|+||||+...+...--. .+.....++ .+.+.|+++....... .......+|.++++++... .
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~ 71 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGKRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEA-L 71 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCch-h
Confidence 578899999999998777543111 111222222 7889999987644331 1344567899999998753 3
Q ss_pred cHHHHHHHHHHHHcCCCCCCceEEEEEe
Q 031796 99 RVVEARDELHRMLNEDELRDAVLLVFAN 126 (153)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~pii~v~~ 126 (153)
+....................+..++.|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 72 AVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred hHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 3333333322222222223455555543
No 377
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.87 E-value=2.8e-05 Score=50.72 Aligned_cols=51 Identities=12% Similarity=0.151 Sum_probs=35.6
Q ss_pred HHhhcCCCEEEEEEECCCcccHH--HHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 79 RHYFQNTQGLIFVVDSNDRDRVV--EARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 79 ~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
...++++|++++|+|+.++.+.. .+..++... . .+.|+++|+||+|+..+.
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~-~~k~~iivlNK~DL~~~~ 58 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----D-PRKKNILLLNKADLLTEE 58 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----c-CCCcEEEEEechhcCCHH
Confidence 44678999999999998765433 333333321 1 468999999999996543
No 378
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.84 E-value=1.9e-05 Score=60.78 Aligned_cols=55 Identities=22% Similarity=0.213 Sum_probs=39.8
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeE--EEEEEEcCeEEEEEEcCCCC
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNISFTVWDVGGQD 72 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~i~D~~g~~ 72 (153)
.+.|.++|-++|||||.||++.+++-.+-..|.+-+ +.++.. .-.+.++|+||..
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~l-s~~v~LCDCPGLV 370 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFL-SPSVCLCDCPGLV 370 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEc-CCCceecCCCCcc
Confidence 489999999999999999999999876444333322 222222 2367889999954
No 379
>PRK12289 GTPase RsgA; Reviewed
Probab=97.84 E-value=4.8e-05 Score=57.00 Aligned_cols=58 Identities=14% Similarity=0.155 Sum_probs=40.8
Q ss_pred HhhcCCCEEEEEEECCCcc-cHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHH
Q 031796 80 HYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITD 141 (153)
Q Consensus 80 ~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~ 141 (153)
..+.++|.+++|+|+.++. ....+..++... .. .++|+++|+||+|+......+.+.+
T Consensus 85 ~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a-~~---~~ip~ILVlNK~DLv~~~~~~~~~~ 143 (352)
T PRK12289 85 PPVANADQILLVFALAEPPLDPWQLSRFLVKA-ES---TGLEIVLCLNKADLVSPTEQQQWQD 143 (352)
T ss_pred hhhhcCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEchhcCChHHHHHHHH
Confidence 4578999999999998765 444555665544 22 4789999999999975543334433
No 380
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.84 E-value=3.1e-05 Score=54.28 Aligned_cols=69 Identities=17% Similarity=0.227 Sum_probs=40.0
Q ss_pred eEEEEEEcCCCCCch----hc--HHHhhcCCCEEEEEEE------CCCcccHHHHH-HHHHHHHcCCCCCCceEEEEEeC
Q 031796 61 ISFTVWDVGGQDKIR----PL--WRHYFQNTQGLIFVVD------SNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANK 127 (153)
Q Consensus 61 ~~~~i~D~~g~~~~~----~~--~~~~~~~~~~~i~v~d------~~~~~s~~~~~-~~~~~~~~~~~~~~~pii~v~~K 127 (153)
-...++|+|||.+.- +. .-..+++.+.-+.++. ++++..|.... .-+...+. -+.|-|=|+.|
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~----melphVNvlSK 172 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLH----MELPHVNVLSK 172 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHh----hcccchhhhhH
Confidence 468999999986541 11 2233444555554444 35565554332 22333333 36788889999
Q ss_pred CCccCC
Q 031796 128 QDLPNA 133 (153)
Q Consensus 128 ~Dl~~~ 133 (153)
+|+-..
T Consensus 173 ~Dl~~~ 178 (290)
T KOG1533|consen 173 ADLLKK 178 (290)
T ss_pred hHHHHh
Confidence 998653
No 381
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.81 E-value=0.00057 Score=52.73 Aligned_cols=23 Identities=48% Similarity=0.655 Sum_probs=19.7
Q ss_pred CccEEEEEcCCCCCHHHHHHhHh
Q 031796 16 KEMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~ 38 (153)
.+..++++|++|+||||.+..+.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 46789999999999999987764
No 382
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.81 E-value=0.00013 Score=55.31 Aligned_cols=23 Identities=35% Similarity=0.483 Sum_probs=20.2
Q ss_pred CccEEEEEcCCCCCHHHHHHhHh
Q 031796 16 KEMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~ 38 (153)
+...++++|++|+||||++..+.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA 262 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMA 262 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHH
Confidence 34789999999999999998885
No 383
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.80 E-value=9e-05 Score=52.85 Aligned_cols=86 Identities=19% Similarity=0.097 Sum_probs=59.7
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCCcc--cccC-ceeeEEEEEEEcCeEEEEEEcCCCCCc-------hhcHHHhhcCCCEE
Q 031796 19 RILMVGLDAAGKTTILYKLKLGEIV--TTIP-TIGFNVETVEYKNISFTVWDVGGQDKI-------RPLWRHYFQNTQGL 88 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~~~--~~~~-t~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~~~~~ 88 (153)
++-++|-+.+||||++..+.+.... +..- |.........+.+-++++.|.||--+- ........+.|+.+
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnli 140 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNLI 140 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccEE
Confidence 7899999999999999988775422 2222 222333455678889999999994221 11223345779999
Q ss_pred EEEEECCCcccHHHHH
Q 031796 89 IFVVDSNDRDRVVEAR 104 (153)
Q Consensus 89 i~v~d~~~~~s~~~~~ 104 (153)
++|+|+..+-+...+.
T Consensus 141 ~~vld~~kp~~hk~~i 156 (358)
T KOG1487|consen 141 FIVLDVLKPLSHKKII 156 (358)
T ss_pred EEEeeccCcccHHHHH
Confidence 9999998887766553
No 384
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.80 E-value=3e-05 Score=51.45 Aligned_cols=60 Identities=18% Similarity=0.189 Sum_probs=36.7
Q ss_pred HhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHH
Q 031796 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDK 142 (153)
Q Consensus 80 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~ 142 (153)
..++++|.+++|+|+.++..- ....+...+... ..+.|+++|+||+|+..+.....+.+.
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~--~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~ 63 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGT--RCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKI 63 (157)
T ss_pred HhhhhCCEEEEEEECCCCccc--cCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHH
Confidence 346889999999999876321 112222222221 235899999999999654433333333
No 385
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=97.80 E-value=0.00017 Score=54.14 Aligned_cols=118 Identities=14% Similarity=0.091 Sum_probs=74.1
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCccc-----------------ccCceeeEEEEEEE------------------
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-----------------TIPTIGFNVETVEY------------------ 58 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-----------------~~~t~~~~~~~~~~------------------ 58 (153)
.+..+.+.++|.-..||||++-.+.-++... .-.+..+.+..+-.
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 3556889999999999999987775433210 01122233322211
Q ss_pred -----cCeEEEEEEcCCCCCchhcH--HHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031796 59 -----KNISFTVWDVGGQDKIRPLW--RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 59 -----~~~~~~i~D~~g~~~~~~~~--~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~ 131 (153)
.+.-+.+.|+.|++.|-... -..-++.|-.++++.+.+--+ .+.....-+. ..-++|++++.||+|+.
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~--~~tkEHLgi~---~a~~lPviVvvTK~D~~ 268 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT--KMTKEHLGIA---LAMELPVIVVVTKIDMV 268 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc--hhhhHhhhhh---hhhcCCEEEEEEecccC
Confidence 12347888999999985443 334467899999999876432 2222222211 12479999999999998
Q ss_pred CCCCH
Q 031796 132 NAMNA 136 (153)
Q Consensus 132 ~~~~~ 136 (153)
.....
T Consensus 269 ~ddr~ 273 (527)
T COG5258 269 PDDRF 273 (527)
T ss_pred cHHHH
Confidence 76543
No 386
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=97.78 E-value=0.00017 Score=53.36 Aligned_cols=129 Identities=21% Similarity=0.233 Sum_probs=77.4
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhc-------CCcc-----cc-----cCceeeEEEEEEEcC--eEEEEEEcCCCCCch
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKL-------GEIV-----TT-----IPTIGFNVETVEYKN--ISFTVWDVGGQDKIR 75 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~-------~~~~-----~~-----~~t~~~~~~~~~~~~--~~~~i~D~~g~~~~~ 75 (153)
+...||.-+|...-|||||-.++.. .++. .. ..-+.++...+.+.. ..+.=.|+||+.+|-
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI 131 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI 131 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence 4568999999999999999776642 1111 11 112334444444433 345556999999885
Q ss_pred hcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCC--------HhHHHHHhCCCc
Q 031796 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--------AAEITDKLGLHS 147 (153)
Q Consensus 76 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~--------~~~~~~~~~~~~ 147 (153)
.....-..+-|+.|+|+.++|..=-+.-+..+.. ++.. =..+++..||.|+.++.+ ..|+..++|++.
T Consensus 132 KNMItGaaqMDGaILVVaatDG~MPQTrEHlLLA--rQVG--V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G 207 (449)
T KOG0460|consen 132 KNMITGAAQMDGAILVVAATDGPMPQTREHLLLA--RQVG--VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG 207 (449)
T ss_pred HHhhcCccccCceEEEEEcCCCCCcchHHHHHHH--HHcC--CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 5444445677999999999875322222222221 1211 234888899999996543 444445555543
No 387
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=0.00016 Score=51.39 Aligned_cols=110 Identities=15% Similarity=0.100 Sum_probs=68.3
Q ss_pred cEEEEEcCCCC--CHHHHHHhHhcCCcccc-cCceeeEEEEEEE------cCeEEEEEEcCCCCCchhcHHHhhcCCCEE
Q 031796 18 MRILMVGLDAA--GKTTILYKLKLGEIVTT-IPTIGFNVETVEY------KNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (153)
Q Consensus 18 ~~i~v~G~~~~--GKSsli~~~~~~~~~~~-~~t~~~~~~~~~~------~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 88 (153)
.-++++|.+|+ ||.++.+++....|... ......++...+. .++++.+-- --+++.-..........++
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcish--icde~~lpn~~~a~pl~a~ 82 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISH--ICDEKFLPNAEIAEPLQAF 82 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeec--ccchhccCCcccccceeeE
Confidence 45788999999 99999999987766522 2223333332222 223333322 1122222222234556889
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
++|||.+....+.+++.|+...--. .--.++.+|||.|...
T Consensus 83 vmvfdlse~s~l~alqdwl~htdin---sfdillcignkvdrvp 123 (418)
T KOG4273|consen 83 VMVFDLSEKSGLDALQDWLPHTDIN---SFDILLCIGNKVDRVP 123 (418)
T ss_pred EEEEeccchhhhHHHHhhccccccc---cchhheeccccccccc
Confidence 9999999999999999888743211 2334788999999754
No 388
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.76 E-value=0.0001 Score=55.15 Aligned_cols=116 Identities=22% Similarity=0.240 Sum_probs=68.8
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCCcc-----------------cccCceeeEEE---------EEEE------------
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGEIV-----------------TTIPTIGFNVE---------TVEY------------ 58 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~~~-----------------~~~~t~~~~~~---------~~~~------------ 58 (153)
..++.++|...+|||||+--+..+... .+-.|..+... .+++
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 378999999999999998666543321 01111111111 1111
Q ss_pred cCeEEEEEEcCCCCCchhcHHHhhc--CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCH
Q 031796 59 KNISFTVWDVGGQDKIRPLWRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA 136 (153)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~ 136 (153)
....+.++|.+|+.+|......-+. ..|..++|+++.........+ .+.-+ . .-++|+.++.+|+|+.+....
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrE-HLgl~-~---AL~iPfFvlvtK~Dl~~~~~~ 321 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTRE-HLGLI-A---ALNIPFFVLVTKMDLVDRQGL 321 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHH-HHHHH-H---HhCCCeEEEEEeeccccchhH
Confidence 1235889999999988655433332 358888888876543221111 11111 1 137999999999999987543
Q ss_pred h
Q 031796 137 A 137 (153)
Q Consensus 137 ~ 137 (153)
+
T Consensus 322 ~ 322 (591)
T KOG1143|consen 322 K 322 (591)
T ss_pred H
Confidence 3
No 389
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.74 E-value=0.00045 Score=51.20 Aligned_cols=74 Identities=18% Similarity=0.215 Sum_probs=42.2
Q ss_pred eEEEEEEcCCCCCchhcHHHhhc--------CCCEEEEEEECCCcccHHH-HHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031796 61 ISFTVWDVGGQDKIRPLWRHYFQ--------NTQGLIFVVDSNDRDRVVE-ARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~--------~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~pii~v~~K~Dl~ 131 (153)
....++.+.|-..-......+.. ..|+++-|+|+........ .......-+. .-=++|+||.|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia------~AD~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA------FADVIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH------hCcEEEEecccCC
Confidence 45677788886554333333322 3588999999866433222 2222222112 2248889999999
Q ss_pred CCCCHhHHH
Q 031796 132 NAMNAAEIT 140 (153)
Q Consensus 132 ~~~~~~~~~ 140 (153)
++...+.+.
T Consensus 159 ~~~~l~~l~ 167 (323)
T COG0523 159 DAEELEALE 167 (323)
T ss_pred CHHHHHHHH
Confidence 876543333
No 390
>PRK13695 putative NTPase; Provisional
Probab=97.73 E-value=0.00017 Score=48.68 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCCHHHHHHhHhc
Q 031796 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~ 39 (153)
++++++|++|+|||||++.+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999988643
No 391
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.73 E-value=0.00023 Score=54.47 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=20.5
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhc
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
..-.++++|++|+||||++..+.+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999987754
No 392
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.72 E-value=4.9e-05 Score=41.48 Aligned_cols=44 Identities=16% Similarity=0.283 Sum_probs=24.3
Q ss_pred CCCEEEEEEECCCcccH--HHHHHHHHHHHcCCCCCCceEEEEEeCCC
Q 031796 84 NTQGLIFVVDSNDRDRV--VEARDELHRMLNEDELRDAVLLVFANKQD 129 (153)
Q Consensus 84 ~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~pii~v~~K~D 129 (153)
=.++++|++|.+..+.+ .+-...+.++.. ...+.|+++|.||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~--~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKP--LFPNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHH--HTTTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHH--HcCCCCEEEEEeccC
Confidence 35889999999987655 332233333322 224799999999998
No 393
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.71 E-value=5.3e-05 Score=51.83 Aligned_cols=53 Identities=21% Similarity=0.080 Sum_probs=37.2
Q ss_pred chhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 74 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
+...+..+++++|++++|+|++++..- ....+. .. ..+.|+++|+||+|+...
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~--~~~~l~---~~--~~~~~~ilV~NK~Dl~~~ 76 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS--LIPRLR---LF--GGNNPVILVGNKIDLLPK 76 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc--cchhHH---Hh--cCCCcEEEEEEchhcCCC
Confidence 577788889999999999999875421 111111 11 136799999999998654
No 394
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.69 E-value=0.00058 Score=53.64 Aligned_cols=111 Identities=21% Similarity=0.289 Sum_probs=59.3
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcC--------Cc--ccccC--------------ceeeEEEEEE-----------EcC
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLG--------EI--VTTIP--------------TIGFNVETVE-----------YKN 60 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~--------~~--~~~~~--------------t~~~~~~~~~-----------~~~ 60 (153)
..-.++++|++|+||||++..+... +. ....+ ..++.+.... ..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 4568899999999999999877531 11 01100 0111111111 124
Q ss_pred eEEEEEEcCCCCCchhcHHH---hhc--CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 61 ISFTVWDVGGQDKIRPLWRH---YFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~---~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
..+.++||+|.......... .+. .....++|++.+. +...+...+..+.. ..+.-+|+||.|....
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~~ 499 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETGR 499 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCccc
Confidence 67999999997543322111 111 1234677777653 23333333333311 1356688999998543
No 395
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.69 E-value=0.0004 Score=52.53 Aligned_cols=111 Identities=14% Similarity=0.175 Sum_probs=59.4
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCc-ccccCceeeEE-----------------------EE-----------EEEcC
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV-----------------------ET-----------VEYKN 60 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~-~~~~~t~~~~~-----------------------~~-----------~~~~~ 60 (153)
+...++++||+||||||-+..+..+-. .......++-. .. .....
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 378899999999999999877654322 11111111110 00 01134
Q ss_pred eEEEEEEcCCCCCchhcH----HHhhcCC--CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 61 ISFTVWDVGGQDKIRPLW----RHYFQNT--QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~----~~~~~~~--~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
..+.+.||.|...+.... ..++..+ .-+.+|++++.. ...+...+..+-. -++ -=++.||.|....
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~----~~i-~~~I~TKlDET~s 353 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSL----FPI-DGLIFTKLDETTS 353 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhcc----CCc-ceeEEEcccccCc
Confidence 579999999987664442 3333333 334567776543 3333333333311 111 2345688886643
No 396
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.67 E-value=0.00041 Score=45.14 Aligned_cols=106 Identities=16% Similarity=0.227 Sum_probs=58.5
Q ss_pred EEEcCCCCCHHHHHHhHhcCCcccccCceeeEEE-EEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCccc
Q 031796 21 LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR 99 (153)
Q Consensus 21 ~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s 99 (153)
+.-|..|+|||++...+...-......+.-++.. ....-.+.+.++|+|+... ......+..+|.++++.+.+ ..+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~-~~s 80 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPE-PTS 80 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCC-hhH
Confidence 3457899999999655532100000000000000 0000116889999997543 33346788999999999976 344
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031796 100 VVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~ 131 (153)
+......+..+.... ...++.+|.|+.+..
T Consensus 81 ~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~~ 110 (139)
T cd02038 81 ITDAYALIKKLAKQL--RVLNFRVVVNRAESP 110 (139)
T ss_pred HHHHHHHHHHHHHhc--CCCCEEEEEeCCCCH
Confidence 444333333332221 345678999999743
No 397
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.67 E-value=0.0001 Score=53.85 Aligned_cols=50 Identities=18% Similarity=0.068 Sum_probs=40.1
Q ss_pred HhhcCCCEEEEEEECCCcc-cHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 80 HYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 80 ~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
..+.++|.+++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+...
T Consensus 74 ~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~ 124 (287)
T cd01854 74 VIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDD 124 (287)
T ss_pred eEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCCh
Confidence 3478999999999999887 77777777665533 36899999999999654
No 398
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.66 E-value=0.00099 Score=51.31 Aligned_cols=67 Identities=9% Similarity=0.147 Sum_probs=36.7
Q ss_pred CeEEEEEEcCCCCCch----hcHHHhhc---CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 60 NISFTVWDVGGQDKIR----PLWRHYFQ---NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 60 ~~~~~i~D~~g~~~~~----~~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
...+.++||+|..... .....+++ ...-+.+|++.+-. ...+...+..+ ... . +-=++.||.|...
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f-~~~---~-~~~vI~TKlDet~ 371 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHF-SRL---P-LDGLIFTKLDETS 371 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHh-CCC---C-CCEEEEecccccc
Confidence 4679999999975443 12233333 23466788887533 22333333332 111 1 2257789999865
Q ss_pred C
Q 031796 133 A 133 (153)
Q Consensus 133 ~ 133 (153)
.
T Consensus 372 ~ 372 (424)
T PRK05703 372 S 372 (424)
T ss_pred c
Confidence 4
No 399
>PRK10867 signal recognition particle protein; Provisional
Probab=97.63 E-value=0.0014 Score=50.48 Aligned_cols=21 Identities=57% Similarity=0.667 Sum_probs=17.3
Q ss_pred ccEEEEEcCCCCCHHHHHHhH
Q 031796 17 EMRILMVGLDAAGKTTILYKL 37 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~ 37 (153)
+.-++++|++|+||||++..+
T Consensus 100 p~vI~~vG~~GsGKTTtaakL 120 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKL 120 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHH
Confidence 467889999999999976554
No 400
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.62 E-value=0.0003 Score=52.14 Aligned_cols=66 Identities=17% Similarity=0.223 Sum_probs=38.0
Q ss_pred eEEEEEEcCCCCCchhcHHHhhc--------CCCEEEEEEECCCcccHHH-HHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031796 61 ISFTVWDVGGQDKIRPLWRHYFQ--------NTQGLIFVVDSNDRDRVVE-ARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~--------~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~pii~v~~K~Dl~ 131 (153)
....++++.|......+...+.. ..++++.|+|+.+...... ......++.. -=++|+||+|+.
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~-------AD~IvlnK~Dl~ 163 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY-------ADRILLTKTDVA 163 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh-------CCEEEEeccccC
Confidence 45677888987766555444322 2588999999865322111 1111122211 137888999987
Q ss_pred CC
Q 031796 132 NA 133 (153)
Q Consensus 132 ~~ 133 (153)
.+
T Consensus 164 ~~ 165 (318)
T PRK11537 164 GE 165 (318)
T ss_pred CH
Confidence 64
No 401
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.61 E-value=7.8e-05 Score=49.34 Aligned_cols=54 Identities=26% Similarity=0.342 Sum_probs=35.9
Q ss_pred hhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 75 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
+.+.....+++|++++|+|++++..... ..+...+.. .+.|+++|+||+|+..+
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~---~~~p~iiv~NK~Dl~~~ 56 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE---LGKKLLIVLNKADLVPK 56 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh---CCCcEEEEEEhHHhCCH
Confidence 3456677788999999999977543221 122222222 35799999999998643
No 402
>PRK08118 topology modulation protein; Reviewed
Probab=97.61 E-value=5.3e-05 Score=50.95 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.+|+|+|++||||||+.+.+...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999888643
No 403
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.61 E-value=0.00072 Score=41.51 Aligned_cols=81 Identities=15% Similarity=0.129 Sum_probs=48.0
Q ss_pred EEEEc-CCCCCHHHHHHhHhcCCcccccCceeeEEEEEEE-cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCc
Q 031796 20 ILMVG-LDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (153)
Q Consensus 20 i~v~G-~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 97 (153)
+.+.| ..|+||||+...+...-... +.....++. ..+.+.++|+|+...... ...+..+|.++++.+.+ .
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~-----~~~vl~~d~d~~~d~viiD~p~~~~~~~--~~~l~~ad~viv~~~~~-~ 73 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARR-----GKRVLLIDLDPQYDYIIIDTPPSLGLLT--RNALAAADLVLIPVQPS-P 73 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhC-----CCcEEEEeCCCCCCEEEEeCcCCCCHHH--HHHHHHCCEEEEeccCC-H
Confidence 45666 56999999976653221101 111111111 116789999998754332 36678899999999875 4
Q ss_pred ccHHHHHHHHH
Q 031796 98 DRVVEARDELH 108 (153)
Q Consensus 98 ~s~~~~~~~~~ 108 (153)
.++......+.
T Consensus 74 ~s~~~~~~~~~ 84 (104)
T cd02042 74 LDLDGLEKLLE 84 (104)
T ss_pred HHHHHHHHHHH
Confidence 45555554443
No 404
>PRK00098 GTPase RsgA; Reviewed
Probab=97.60 E-value=9.9e-05 Score=54.20 Aligned_cols=47 Identities=17% Similarity=0.149 Sum_probs=35.5
Q ss_pred hhcCCCEEEEEEECCCcccHHHH-HHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031796 81 YFQNTQGLIFVVDSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 81 ~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~pii~v~~K~Dl~ 131 (153)
...++|.+++|+|+.++...... ..|+... .. .++|+++|+||+|+.
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~-~~---~~ip~iIVlNK~DL~ 124 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLA-EA---NGIKPIIVLNKIDLL 124 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEhHHcC
Confidence 35889999999999888765554 4444433 33 478999999999996
No 405
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.60 E-value=0.00039 Score=52.06 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=24.9
Q ss_pred eEEEEEEcCCCCCchhcHHHhh-------cCCCEEEEEEECCC
Q 031796 61 ISFTVWDVGGQDKIRPLWRHYF-------QNTQGLIFVVDSND 96 (153)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~-------~~~~~~i~v~d~~~ 96 (153)
....++++.|......+...+. -..++++.|+|+.+
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~ 135 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPA 135 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECch
Confidence 4577888999776655544431 14688999999864
No 406
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.60 E-value=0.0018 Score=49.83 Aligned_cols=79 Identities=16% Similarity=0.133 Sum_probs=41.0
Q ss_pred eEEEEEEcCCCCCchhcHHHh------hcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 61 ISFTVWDVGGQDKIRPLWRHY------FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~------~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
+.+.++||+|........-.. .-..+.+++|+|+...+...... ..+.... + ..=+|.||.|.....
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a---~~f~~~v---~-i~giIlTKlD~~~~~ 255 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTA---KTFNERL---G-LTGVVLTKLDGDARG 255 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHH---HHHHhhC---C-CCEEEEeCccCcccc
Confidence 568999999965442221111 22468889999986543222222 2221111 1 234557898854322
Q ss_pred -CHhHHHHHhCCC
Q 031796 135 -NAAEITDKLGLH 146 (153)
Q Consensus 135 -~~~~~~~~~~~~ 146 (153)
....++...+++
T Consensus 256 G~~lsi~~~~~~P 268 (428)
T TIGR00959 256 GAALSVRSVTGKP 268 (428)
T ss_pred cHHHHHHHHHCcC
Confidence 244444544443
No 407
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.60 E-value=0.0026 Score=48.40 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=19.1
Q ss_pred ccEEEEEcCCCCCHHHHHHhHh
Q 031796 17 EMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~ 38 (153)
+..++++|++|+||||.+..+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA 195 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLA 195 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999987774
No 408
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.59 E-value=6.4e-05 Score=47.45 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHhHhcC
Q 031796 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.|++.|++||||||+.+.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998654
No 409
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.59 E-value=0.00097 Score=54.54 Aligned_cols=22 Identities=36% Similarity=0.357 Sum_probs=19.0
Q ss_pred cEEEEEcCCCCCHHHHHHhHhc
Q 031796 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~ 39 (153)
--++++|++|+||||.+..+..
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHh
Confidence 4578999999999999988764
No 410
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.58 E-value=7.7e-05 Score=41.58 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHhHh
Q 031796 19 RILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~ 38 (153)
..++.|+.|+||||++.++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999998874
No 411
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.58 E-value=6.2e-05 Score=51.15 Aligned_cols=23 Identities=48% Similarity=0.648 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.+|+++|++|+||||+.+.+...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998765
No 412
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.56 E-value=6.9e-05 Score=48.65 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHhHhc
Q 031796 20 ILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 20 i~v~G~~~~GKSsli~~~~~ 39 (153)
|+++|++||||||+++.+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999873
No 413
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.55 E-value=0.00089 Score=47.55 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=24.4
Q ss_pred hcccCccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 12 LFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.....--++++.|+.|+||||+++.+++.
T Consensus 47 l~G~pannvLL~G~rGtGKSSlVkall~~ 75 (249)
T PF05673_consen 47 LQGLPANNVLLWGARGTGKSSLVKALLNE 75 (249)
T ss_pred HcCCCCcceEEecCCCCCHHHHHHHHHHH
Confidence 33456688999999999999999998864
No 414
>PRK07261 topology modulation protein; Provisional
Probab=97.54 E-value=7.9e-05 Score=50.30 Aligned_cols=22 Identities=36% Similarity=0.658 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHhHhc
Q 031796 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~ 39 (153)
.+|+++|++|+|||||.+.+..
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999998754
No 415
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.53 E-value=0.00083 Score=51.41 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=19.3
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhc
Q 031796 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
..-++++|++||||||++.++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34588999999999999888753
No 416
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.51 E-value=6.3e-05 Score=56.56 Aligned_cols=68 Identities=18% Similarity=0.277 Sum_probs=45.8
Q ss_pred hHHHHHhhhcccCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEc--CeEEEEEEcCCCC
Q 031796 4 SFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK--NISFTVWDVGGQD 72 (153)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~D~~g~~ 72 (153)
.++++-+.+..++.+.+.++|-+++||||+||++...+.....|-.+ +...+.+- ..++-++|+||-.
T Consensus 294 llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpG-ETKVWQYItLmkrIfLIDcPGvV 363 (572)
T KOG2423|consen 294 LLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPG-ETKVWQYITLMKRIFLIDCPGVV 363 (572)
T ss_pred HHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCC-cchHHHHHHHHhceeEecCCCcc
Confidence 35556666777889999999999999999999998776543322222 22222221 1367788999943
No 417
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.00099 Score=51.84 Aligned_cols=112 Identities=18% Similarity=0.174 Sum_probs=73.7
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCC------------cccc---cCceeeEE--EE------------------EEEc
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGE------------IVTT---IPTIGFNV--ET------------------VEYK 59 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~------------~~~~---~~t~~~~~--~~------------------~~~~ 59 (153)
.+-.+.-++....-|||||-..+.... |..+ +...+++. .. -+.+
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~ 96 (842)
T KOG0469|consen 17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN 96 (842)
T ss_pred cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence 344677788889999999988875321 2211 11112221 11 1223
Q ss_pred CeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031796 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~ 131 (153)
+..++++|.||+.+|.+.....++=.|+.+.|+|+-+.-.. +.+..+.+.+.+ .+.-+++.||+|..
T Consensus 97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCV-QTETVLrQA~~E----RIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCV-QTETVLRQAIAE----RIKPVLVMNKMDRA 163 (842)
T ss_pred ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEe-chHHHHHHHHHh----hccceEEeehhhHH
Confidence 46799999999999999999899999999999998654333 223344444443 34557788999954
No 418
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.47 E-value=0.00098 Score=50.44 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=19.5
Q ss_pred CccEEEEEcCCCCCHHHHHHhHh
Q 031796 16 KEMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~ 38 (153)
....++++|+.|+||||++.++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34568899999999999988775
No 419
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.46 E-value=0.00013 Score=50.73 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGE 41 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~ 41 (153)
=.++++||+|||||||++++.+-.
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCc
Confidence 358899999999999998875543
No 420
>PF05729 NACHT: NACHT domain
Probab=97.46 E-value=0.0011 Score=43.67 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHhHhcC
Q 031796 20 ILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 20 i~v~G~~~~GKSsli~~~~~~ 40 (153)
+++.|++|+|||+++.++...
T Consensus 3 l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 789999999999999888653
No 421
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.46 E-value=0.00032 Score=47.24 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHhHhcC
Q 031796 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~ 40 (153)
++++.|++|+||||++++++..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHH
Confidence 6899999999999999998643
No 422
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=0.00019 Score=51.17 Aligned_cols=90 Identities=21% Similarity=0.221 Sum_probs=61.6
Q ss_pred HHhhhcccCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEE---EcC--eEEEEEEcCCCCCchhcHHHhh
Q 031796 8 LFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE---YKN--ISFTVWDVGGQDKIRPLWRHYF 82 (153)
Q Consensus 8 ~~~~~~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~---~~~--~~~~i~D~~g~~~~~~~~~~~~ 82 (153)
.+.+.-.+....|++.|+.+. ||+|++++.+.-....||...++.... +.. --.++|+.+|......+...-+
T Consensus 36 qL~e~~~~~E~~I~~~Gn~~~--tt~I~~~FdR~e~~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPi 113 (363)
T KOG3929|consen 36 QLAEIAEKFEFFIGSKGNGGK--TTIILRCFDRDEPPKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPI 113 (363)
T ss_pred HHHHhhccceeEEEEecCCce--eEeehhhcCcccCCCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcc
Confidence 455555677788999988765 999999988876677777777664322 111 1357899988776655544333
Q ss_pred c----CCCEEEEEEECCCccc
Q 031796 83 Q----NTQGLIFVVDSNDRDR 99 (153)
Q Consensus 83 ~----~~~~~i~v~d~~~~~s 99 (153)
. +.-++|+++|.++++.
T Consensus 114 t~~~l~~~slIL~LDls~p~~ 134 (363)
T KOG3929|consen 114 TGDTLRTFSLILVLDLSKPND 134 (363)
T ss_pred cccchhhhhheeeeecCChHH
Confidence 3 2346789999998875
No 423
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.42 E-value=0.00015 Score=46.77 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCC
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~ 41 (153)
..-.++++|++|+|||||++.+.+..
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 33568999999999999999887763
No 424
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.41 E-value=0.0017 Score=50.71 Aligned_cols=22 Identities=32% Similarity=0.303 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCCHHHHHHhHhc
Q 031796 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~ 39 (153)
.-++++|++|+||||.+..+..
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHH
Confidence 4688999999999999988864
No 425
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.40 E-value=9.6e-05 Score=49.31 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=17.3
Q ss_pred EEEEEcCCCCCHHHHHHhHhcC
Q 031796 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~ 40 (153)
||+++|.+++|||||++.+...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999998754
No 426
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.40 E-value=0.0012 Score=50.11 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=22.6
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
+.....+++.|++|+|||++++.+...
T Consensus 52 ~~~~~~~lI~G~~GtGKT~l~~~v~~~ 78 (394)
T PRK00411 52 GSRPLNVLIYGPPGTGKTTTVKKVFEE 78 (394)
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 345577999999999999999998753
No 427
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.38 E-value=0.0017 Score=46.99 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=19.7
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhc
Q 031796 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
.-+++++|++|+||||++..+..
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~ 97 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAW 97 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHH
Confidence 36999999999999999877643
No 428
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.38 E-value=0.00011 Score=55.21 Aligned_cols=56 Identities=20% Similarity=0.340 Sum_probs=39.2
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeE--EEEEEEcCeEEEEEEcCCC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNISFTVWDVGGQ 71 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~i~D~~g~ 71 (153)
++.+++.|+|-+++||||+||++..++...-.++.+++ ...+. -+..+.+.|.||-
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~-Ldk~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVK-LDKKIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhhee-ccCCceeccCCce
Confidence 67799999999999999999999988764322222222 22221 2347888999993
No 429
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.35 E-value=0.0002 Score=40.85 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHhHhcC
Q 031796 20 ILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 20 i~v~G~~~~GKSsli~~~~~~ 40 (153)
+++.|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999988754
No 430
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.35 E-value=0.00017 Score=50.64 Aligned_cols=22 Identities=32% Similarity=0.338 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHhHhcC
Q 031796 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~ 40 (153)
-+.++||+|||||||++.+-+-
T Consensus 33 ~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 3789999999999999987553
No 431
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.33 E-value=0.00018 Score=50.88 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHhHhcCC
Q 031796 20 ILMVGLDAAGKTTILYKLKLGE 41 (153)
Q Consensus 20 i~v~G~~~~GKSsli~~~~~~~ 41 (153)
+.++|++|||||||++.+.+-.
T Consensus 32 vsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999887643
No 432
>PRK12288 GTPase RsgA; Reviewed
Probab=97.32 E-value=0.0009 Score=50.20 Aligned_cols=49 Identities=16% Similarity=0.019 Sum_probs=39.0
Q ss_pred hcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 82 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
..++|.+++|++.....++..+..|+..... .++|+++|+||+|+....
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~----~~i~~VIVlNK~DL~~~~ 166 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET----LGIEPLIVLNKIDLLDDE 166 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCcH
Confidence 3568999999999877788888888775432 468999999999997543
No 433
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.32 E-value=0.0004 Score=45.97 Aligned_cols=44 Identities=20% Similarity=0.308 Sum_probs=29.6
Q ss_pred CEEEEEEECCCcccHHHHHHHHH-HHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 86 QGLIFVVDSNDRDRVVEARDELH-RMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 86 ~~~i~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
|.+++|+|+.++.+.... ++. ..+.. .+.|+++|+||+|+....
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~~---~~~p~IiVlNK~Dl~~~~ 45 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIERVLIKE---KGKKLILVLNKADLVPKE 45 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHHHHHhc---CCCCEEEEEechhcCCHH
Confidence 689999999876544322 222 22222 468999999999996543
No 434
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.32 E-value=0.00021 Score=45.52 Aligned_cols=21 Identities=38% Similarity=0.409 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHhHhcC
Q 031796 20 ILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 20 i~v~G~~~~GKSsli~~~~~~ 40 (153)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999988764
No 435
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.32 E-value=0.0018 Score=42.44 Aligned_cols=21 Identities=43% Similarity=0.659 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHhHhcC
Q 031796 20 ILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 20 i~v~G~~~~GKSsli~~~~~~ 40 (153)
+++.|++|+|||+++..+...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~ 22 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALN 22 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHH
Confidence 689999999999999888654
No 436
>PRK06217 hypothetical protein; Validated
Probab=97.30 E-value=0.00022 Score=48.57 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.+|+|+|.+||||||+.+++...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988643
No 437
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.30 E-value=0.00029 Score=44.75 Aligned_cols=25 Identities=36% Similarity=0.352 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCC
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~ 41 (153)
.-.++++|++|+||||+++.+...-
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc
Confidence 3578999999999999999987653
No 438
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.28 E-value=0.0071 Score=40.55 Aligned_cols=80 Identities=11% Similarity=0.056 Sum_probs=49.8
Q ss_pred EEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCC---HhH
Q 031796 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAE 138 (153)
Q Consensus 62 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~---~~~ 138 (153)
.+.++|+|+..... ....+..+|.++++++.+. .++......+..+... ......+|.|+.|...... .++
T Consensus 64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~~~~~~~~~~ 137 (179)
T cd02036 64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL---GIKVVGVIVNRVRPDMVEGGDMVED 137 (179)
T ss_pred CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc---CCceEEEEEeCCcccccchhhHHHH
Confidence 69999999865433 3445688999999998763 4444444433333221 2345778999998764332 245
Q ss_pred HHHHhCCCc
Q 031796 139 ITDKLGLHS 147 (153)
Q Consensus 139 ~~~~~~~~~ 147 (153)
+.+.++.+-
T Consensus 138 ~~~~~~~~v 146 (179)
T cd02036 138 IEEILGVPL 146 (179)
T ss_pred HHHHhCCCE
Confidence 666666553
No 439
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.28 E-value=0.00027 Score=49.08 Aligned_cols=27 Identities=30% Similarity=0.325 Sum_probs=23.2
Q ss_pred cccCccEEEEEcCCCCCHHHHHHhHhc
Q 031796 13 FAKKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
++.+...|.+.|++|||||||.+.+..
T Consensus 2 ~~~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 2 MMKKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 346778999999999999999988864
No 440
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.28 E-value=0.00025 Score=48.40 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHhHhcC
Q 031796 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.++++|++|+||||+++.+.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999998654
No 441
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.28 E-value=0.00027 Score=51.04 Aligned_cols=26 Identities=35% Similarity=0.415 Sum_probs=22.7
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
...-.+++.|++||||||+++.+...
T Consensus 125 ~~~~~ili~G~tGSGKTT~l~all~~ 150 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLLNALLEE 150 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCccccchHHHHHhhh
Confidence 44789999999999999999998753
No 442
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.28 E-value=0.00023 Score=48.08 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=18.1
Q ss_pred hhcccCccEEEEEcCCCCCHHHHHHhHhc
Q 031796 11 RLFAKKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 11 ~~~~~~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
.........+++.|++|+|||++++++..
T Consensus 18 ~~~~~~~~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 18 AAQSGSPRNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp GTSS-----EEE-B-TTSSHHHHHHHHHH
T ss_pred HHHcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34456668899999999999999998754
No 443
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.27 E-value=0.0023 Score=39.62 Aligned_cols=99 Identities=13% Similarity=0.081 Sum_probs=52.4
Q ss_pred cCCCCCHHHHHHhHhcCCccc-ccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcccHHH
Q 031796 24 GLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVE 102 (153)
Q Consensus 24 G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~ 102 (153)
+..|+||||....+...-... ...+.-.+.... ....+.++|+|+..... ....+..+|.++++.+.+ ..+...
T Consensus 7 ~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~--~~~D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~-~~s~~~ 81 (106)
T cd03111 7 AKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ--FGDDYVVVDLGRSLDEV--SLAALDQADRVFLVTQQD-LPSIRN 81 (106)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC--CCCCEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCC-hHHHHH
Confidence 568999999876553210000 000000000000 11278999999875433 334678899999999865 445555
Q ss_pred HHHHHHHHHcCCCCCCceEEEEEeC
Q 031796 103 ARDELHRMLNEDELRDAVLLVFANK 127 (153)
Q Consensus 103 ~~~~~~~~~~~~~~~~~pii~v~~K 127 (153)
....+..+.+........+.+|+|+
T Consensus 82 ~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 82 AKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHcCCCCcCceEEEecC
Confidence 5444444332211113456677664
No 444
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.26 E-value=0.00029 Score=49.99 Aligned_cols=27 Identities=30% Similarity=0.508 Sum_probs=23.1
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
-..+++++++|++|||||+++..++..
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 366789999999999999999888653
No 445
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.26 E-value=0.00024 Score=50.91 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHhHhc
Q 031796 19 RILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~ 39 (153)
=++++||.|||||||++.+.+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 367899999999999999876
No 446
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.26 E-value=0.00052 Score=46.91 Aligned_cols=33 Identities=27% Similarity=0.241 Sum_probs=25.2
Q ss_pred HHHhhhcccCccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 7 ~~~~~~~~~~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.++.... ...-.++++|++|+||||+++.+.+.
T Consensus 16 ~~l~~~v-~~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 16 AYLWLAV-EARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred HHHHHHH-hCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3444443 34578999999999999999988764
No 447
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.26 E-value=0.00096 Score=46.84 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=21.4
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhc
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
..+.+++++|++|+||||+++.+.+
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcCC
Confidence 4467799999999999999988754
No 448
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.24 E-value=0.00029 Score=48.72 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
++++.++|+.|+||||+++++.+.
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999988653
No 449
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.23 E-value=0.0003 Score=45.76 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHhHhcC
Q 031796 20 ILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 20 i~v~G~~~~GKSsli~~~~~~ 40 (153)
++++|++|+||||+++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 688999999999999998764
No 450
>PHA00729 NTP-binding motif containing protein
Probab=97.23 E-value=0.00046 Score=48.51 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=24.8
Q ss_pred HHhhhcccCccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 8 LFSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 8 ~~~~~~~~~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
+........-.++++.|++|+|||++..++...
T Consensus 8 ~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 8 IVSAYNNNGFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred HHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 344444445579999999999999999887543
No 451
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.22 E-value=0.00028 Score=47.72 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHhHhcC
Q 031796 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.++++|++||||||+++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999987553
No 452
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.20 E-value=0.0044 Score=44.79 Aligned_cols=32 Identities=38% Similarity=0.501 Sum_probs=24.2
Q ss_pred HhhhcccCccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 9 ~~~~~~~~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
+.+......--+++.|++|+||||+++.++..
T Consensus 72 l~~~~~~~~GlilisG~tGSGKTT~l~all~~ 103 (264)
T cd01129 72 FRKLLEKPHGIILVTGPTGSGKTTTLYSALSE 103 (264)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHHHHHHhh
Confidence 33444444556999999999999999988654
No 453
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.20 E-value=0.0003 Score=48.98 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=17.0
Q ss_pred cEEEEEcCCCCCHHHHHHhH
Q 031796 18 MRILMVGLDAAGKTTILYKL 37 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~ 37 (153)
-=..++||+|||||||++.+
T Consensus 34 ~VTAlIGPSGcGKST~LR~l 53 (253)
T COG1117 34 KVTALIGPSGCGKSTLLRCL 53 (253)
T ss_pred ceEEEECCCCcCHHHHHHHH
Confidence 33678999999999999776
No 454
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.19 E-value=0.00034 Score=47.34 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHhHhcC
Q 031796 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~ 40 (153)
-++++|++||||||+++.+...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 5789999999999999999764
No 455
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.19 E-value=0.00035 Score=44.29 Aligned_cols=21 Identities=38% Similarity=0.444 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHhHhcC
Q 031796 20 ILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 20 i~v~G~~~~GKSsli~~~~~~ 40 (153)
|++.|.+||||||+++.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999888654
No 456
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.18 E-value=0.00065 Score=49.62 Aligned_cols=57 Identities=18% Similarity=0.321 Sum_probs=36.1
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcc-------cccCceeeEEEE-EEE-cCeEEEEEEcCCC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-------TTIPTIGFNVET-VEY-KNISFTVWDVGGQ 71 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~-------~~~~t~~~~~~~-~~~-~~~~~~i~D~~g~ 71 (153)
...+++.|+|-||+|||||+|++...... ...|.....+.. +.. ..-.+.+.||||-
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCc
Confidence 46699999999999999999988654322 112222111111 222 2245788899993
No 457
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.17 E-value=0.0019 Score=47.96 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
...++++.|++||||||+++++...
T Consensus 143 ~~~nilI~G~tGSGKTTll~aL~~~ 167 (323)
T PRK13833 143 SRLNIVISGGTGSGKTTLANAVIAE 167 (323)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998764
No 458
>PRK03839 putative kinase; Provisional
Probab=97.16 E-value=0.0004 Score=47.06 Aligned_cols=22 Identities=32% Similarity=0.296 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHhHhcC
Q 031796 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~ 40 (153)
+|+++|.+||||||+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999888543
No 459
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.15 E-value=0.00044 Score=44.75 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHhHhc
Q 031796 19 RILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~ 39 (153)
.|+++|++|+|||++++.+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999987754
No 460
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.15 E-value=0.00035 Score=51.93 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHhHhcCC
Q 031796 20 ILMVGLDAAGKTTILYKLKLGE 41 (153)
Q Consensus 20 i~v~G~~~~GKSsli~~~~~~~ 41 (153)
++++||+||||||+++.+.+-.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7889999999999999887643
No 461
>PRK14530 adenylate kinase; Provisional
Probab=97.14 E-value=0.00047 Score=48.15 Aligned_cols=21 Identities=43% Similarity=0.512 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCCHHHHHHhHh
Q 031796 18 MRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~ 38 (153)
.+|+++|++||||||+.+.+.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La 24 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLA 24 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999998875
No 462
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.14 E-value=0.00038 Score=49.67 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHhHhc
Q 031796 19 RILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~ 39 (153)
-+.++||.|+|||||++.+++
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999988
No 463
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.14 E-value=0.00045 Score=46.89 Aligned_cols=24 Identities=17% Similarity=0.367 Sum_probs=20.5
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHh
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~ 38 (153)
.+.-.+.++|++|+|||||++.+.
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 344678999999999999999875
No 464
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.13 E-value=0.00042 Score=51.84 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=23.3
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
....++++.|++||||||+++.+.+.
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~ 185 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISA 185 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcc
Confidence 56789999999999999999999764
No 465
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.13 E-value=0.00063 Score=47.44 Aligned_cols=36 Identities=28% Similarity=0.274 Sum_probs=25.3
Q ss_pred HHHHhhhcccCccEEEEEcCCCCCHHHHHHhHhcCC
Q 031796 6 TKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGE 41 (153)
Q Consensus 6 ~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~~~~~~ 41 (153)
+.+.+...+....-+++.|+.|+|||||++.+....
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 334443334446778999999999999999987643
No 466
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.12 E-value=0.00045 Score=48.21 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
=.+.++|++|+|||||++.+.+.
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 45899999999999999998775
No 467
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.12 E-value=0.00045 Score=42.90 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=18.7
Q ss_pred cEEEEEcCCCCCHHHHHHhHh
Q 031796 18 MRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~ 38 (153)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 458999999999999998875
No 468
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.12 E-value=0.00044 Score=45.16 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHhHhcC
Q 031796 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.+.++|+.++|||||+..+++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988764
No 469
>PRK14532 adenylate kinase; Provisional
Probab=97.11 E-value=0.00048 Score=46.98 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCCHHHHHHhHhc
Q 031796 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~ 39 (153)
++|+++|++||||||+.+++..
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999988854
No 470
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.10 E-value=0.00043 Score=46.19 Aligned_cols=21 Identities=48% Similarity=0.525 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHhHhc
Q 031796 19 RILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~ 39 (153)
.+.++|.+|+||||+++++..
T Consensus 3 vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999875
No 471
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.09 E-value=0.00058 Score=47.47 Aligned_cols=26 Identities=19% Similarity=0.442 Sum_probs=21.7
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.+..-++++|++|+||||+++.+...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 35566889999999999999998654
No 472
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.09 E-value=0.00044 Score=47.61 Aligned_cols=20 Identities=30% Similarity=0.328 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHhHhc
Q 031796 20 ILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 20 i~v~G~~~~GKSsli~~~~~ 39 (153)
|.+.|++|||||||.+.+.+
T Consensus 2 igi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999998855
No 473
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.09 E-value=0.00048 Score=46.81 Aligned_cols=25 Identities=32% Similarity=0.259 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
..-.+.++|++|+|||||++.+.+-
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 3457889999999999999988765
No 474
>PRK14531 adenylate kinase; Provisional
Probab=97.08 E-value=0.00055 Score=46.62 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCCHHHHHHhHhc
Q 031796 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~ 39 (153)
.+|+++|++||||||+.+.+..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999887743
No 475
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.08 E-value=0.00049 Score=46.74 Aligned_cols=21 Identities=33% Similarity=0.328 Sum_probs=18.7
Q ss_pred cEEEEEcCCCCCHHHHHHhHh
Q 031796 18 MRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~ 38 (153)
.-++++|++||||||+++++.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999998886
No 476
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.07 E-value=0.00054 Score=47.42 Aligned_cols=23 Identities=35% Similarity=0.260 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
=.+.++|++|+|||||++.+.+.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999998775
No 477
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.07 E-value=0.0005 Score=47.02 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
-.+.++|++|+|||||++.+.+.
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999988775
No 478
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.07 E-value=0.00048 Score=47.59 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHhHhcC
Q 031796 20 ILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 20 i~v~G~~~~GKSsli~~~~~~ 40 (153)
+++.|++||||||+++.+...
T Consensus 4 ilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999987654
No 479
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.07 E-value=0.00049 Score=47.77 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
-.+.++|++|+|||||++.+.+.
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999998875
No 480
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.07 E-value=0.00057 Score=47.47 Aligned_cols=25 Identities=32% Similarity=0.282 Sum_probs=21.2
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhc
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
++..-+.+.|++|||||||++.+.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 4456788999999999999998864
No 481
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.06 E-value=0.0006 Score=48.22 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhc
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
..++|+++|++||||||+.+.+..
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988754
No 482
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.0014 Score=49.38 Aligned_cols=51 Identities=16% Similarity=0.277 Sum_probs=31.7
Q ss_pred cCeEEEEEEcCCCCCchhc-HHHh-----hcCCCEEEEEEECCCcccHHHHHHHHHH
Q 031796 59 KNISFTVWDVGGQDKIRPL-WRHY-----FQNTQGLIFVVDSNDRDRVVEARDELHR 109 (153)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~-~~~~-----~~~~~~~i~v~d~~~~~s~~~~~~~~~~ 109 (153)
....+.|.||+|...-... .... .-+.|-+|+|.|++--+...+....+.+
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~ 238 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKE 238 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHH
Confidence 3467999999996543222 1111 1246999999999866655554444444
No 483
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.06 E-value=0.00057 Score=46.22 Aligned_cols=52 Identities=17% Similarity=0.131 Sum_probs=32.0
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHH--HcCCCCCCceEEEEEeCCCccCCCCHhHHHHH
Q 031796 86 QGLIFVVDSNDRDRVVEARDELHRM--LNEDELRDAVLLVFANKQDLPNAMNAAEITDK 142 (153)
Q Consensus 86 ~~~i~v~d~~~~~s~~~~~~~~~~~--~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~ 142 (153)
|++++|+|+.++.+-. ...+... +.. .+.|+++|+||+|+.+.....++.+.
T Consensus 1 DvVl~VvDar~p~~~~--~~~i~~~~~l~~---~~kp~IlVlNK~DL~~~~~l~~~~~~ 54 (172)
T cd04178 1 DVILEVLDARDPLGCR--CPQVEEAVLQAG---GNKKLVLVLNKIDLVPKENVEKWLKY 54 (172)
T ss_pred CEEEEEEECCCCCCCC--CHHHHHHHHhcc---CCCCEEEEEehhhcCCHHHHHHHHHH
Confidence 7899999997753221 1122222 222 35799999999999765544444443
No 484
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.06 E-value=0.00058 Score=47.53 Aligned_cols=23 Identities=35% Similarity=0.371 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
-.+.++|++|+|||||++.+.+.
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999988775
No 485
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.05 E-value=0.00057 Score=47.65 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
=.+.++|++|+|||||++.+.+.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999998875
No 486
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.05 E-value=0.00059 Score=47.45 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
=.++++|++|+|||||++.+.+.
T Consensus 28 ~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 28 EFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35889999999999999998875
No 487
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.05 E-value=0.0006 Score=47.35 Aligned_cols=23 Identities=26% Similarity=0.173 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
=.+.++|++|+|||||++.+.+.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999875
No 488
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.04 E-value=0.0006 Score=47.39 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGE 41 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~ 41 (153)
-.++++|++|+|||||++.+.+..
T Consensus 27 ~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 27 EVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998753
No 489
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.04 E-value=0.00059 Score=48.24 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
=.+.++|++|+|||||++.+.+.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999998875
No 490
>PF13479 AAA_24: AAA domain
Probab=97.04 E-value=0.00052 Score=47.94 Aligned_cols=23 Identities=43% Similarity=0.638 Sum_probs=21.0
Q ss_pred cCccEEEEEcCCCCCHHHHHHhH
Q 031796 15 KKEMRILMVGLDAAGKTTILYKL 37 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~ 37 (153)
++.+++++.|++|+||||++..+
T Consensus 1 ~~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 1 KKPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CCceEEEEECCCCCCHHHHHHhC
Confidence 36789999999999999999887
No 491
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.04 E-value=0.0085 Score=40.46 Aligned_cols=84 Identities=11% Similarity=0.098 Sum_probs=55.6
Q ss_pred cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC--CH
Q 031796 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NA 136 (153)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~--~~ 136 (153)
..+.+.++|+|+...- .....+..+|.+++++..+ ..+.......+..+. + .+.|+.+|.||+|..... +.
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~-~---~~~~~~vV~N~~~~~~~~~~~~ 163 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPT-PSGLHDLERAVELVR-H---FGIPVGVVINKYDLNDEIAEEI 163 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHHH-H---cCCCEEEEEeCCCCCcchHHHH
Confidence 4578999999976432 3345578899999999976 345555555444332 2 246788999999976432 35
Q ss_pred hHHHHHhCCCccc
Q 031796 137 AEITDKLGLHSLR 149 (153)
Q Consensus 137 ~~~~~~~~~~~~~ 149 (153)
.++.+++|++.+.
T Consensus 164 ~~~~~~~~~~vl~ 176 (179)
T cd03110 164 EDYCEEEGIPILG 176 (179)
T ss_pred HHHHHHcCCCeEE
Confidence 5566667766543
No 492
>PRK04195 replication factor C large subunit; Provisional
Probab=97.04 E-value=0.00074 Score=52.85 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
...+++.|++|+||||+++.+.+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 567999999999999999998764
No 493
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.04 E-value=0.00094 Score=48.83 Aligned_cols=31 Identities=29% Similarity=0.202 Sum_probs=23.5
Q ss_pred HHhhhcccCccEEEEEcCCCCCHHHHHHhHh
Q 031796 8 LFSRLFAKKEMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 8 ~~~~~~~~~~~~i~v~G~~~~GKSsli~~~~ 38 (153)
++.....+.++=|.+.|++||||||+++.+.
T Consensus 53 f~~~~~~~~p~IIGIaG~~GSGKSTlar~L~ 83 (290)
T TIGR00554 53 FLGTNGAKIPYIISIAGSVAVGKSTTARILQ 83 (290)
T ss_pred HHhcccCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 3333334567889999999999999997663
No 494
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.04 E-value=0.00056 Score=47.54 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHhHhcC
Q 031796 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.++++|++|+|||||++.+.+.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999998764
No 495
>PRK13949 shikimate kinase; Provisional
Probab=97.04 E-value=0.0006 Score=45.92 Aligned_cols=21 Identities=48% Similarity=0.564 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHhHhc
Q 031796 19 RILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~ 39 (153)
+|+++|++|+||||+.+.+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999987653
No 496
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.03 E-value=0.0006 Score=46.69 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.=++++||+||||||+++++...
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 44889999999999999999765
No 497
>PRK01889 GTPase RsgA; Reviewed
Probab=97.03 E-value=0.00066 Score=51.14 Aligned_cols=52 Identities=17% Similarity=0.129 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCCcccccCce--------eeEEEEEEEcCeEEEEEEcCC
Q 031796 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTI--------GFNVETVEYKNISFTVWDVGG 70 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~--------~~~~~~~~~~~~~~~i~D~~g 70 (153)
+++++|.+|+|||||++.+.+........-. ......+..-.-...++||||
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~DtpG 256 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDTPG 256 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCCeecCCCc
No 498
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.03 E-value=0.00064 Score=47.31 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
=.+.++|++|+|||||++.+.+.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 27 EFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35889999999999999998775
No 499
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.03 E-value=0.00057 Score=47.81 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGE 41 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~ 41 (153)
-.+.++|++|+|||||++.+.+..
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999988753
No 500
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.03 E-value=0.00065 Score=46.98 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
=.+.++|++|+|||||++.+.+.
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999998875
Done!