Query 031796
Match_columns 153
No_of_seqs 126 out of 1536
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 08:22:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031796.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031796hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zj6_A ADP-ribosylation factor 100.0 4.6E-31 1.6E-35 179.0 17.0 145 1-146 1-145 (187)
2 1moz_A ARL1, ADP-ribosylation 100.0 6.1E-31 2.1E-35 177.4 15.8 149 1-149 1-150 (183)
3 2x77_A ADP-ribosylation factor 100.0 2.7E-31 9.3E-36 180.3 14.1 149 1-149 3-154 (189)
4 2b6h_A ADP-ribosylation factor 100.0 1.3E-30 4.5E-35 177.8 14.7 143 7-149 19-161 (192)
5 1ksh_A ARF-like protein 2; sma 100.0 4.4E-30 1.5E-34 173.8 16.2 143 4-147 5-148 (186)
6 1fzq_A ADP-ribosylation factor 100.0 8.1E-30 2.8E-34 172.3 15.1 134 15-148 14-147 (181)
7 1r8s_A ADP-ribosylation factor 100.0 1.3E-29 4.5E-34 168.0 15.7 132 18-149 1-132 (164)
8 4dkx_A RAS-related protein RAB 100.0 5.3E-30 1.8E-34 178.0 13.9 135 14-149 10-154 (216)
9 1upt_A ARL1, ADP-ribosylation 100.0 3.8E-29 1.3E-33 166.7 17.4 135 15-149 5-139 (171)
10 1m2o_B GTP-binding protein SAR 100.0 1.6E-28 5.5E-33 167.1 17.2 134 13-146 19-152 (190)
11 1f6b_A SAR1; gtpases, N-termin 100.0 1.3E-28 4.5E-33 168.6 15.6 133 13-145 21-153 (198)
12 2h17_A ADP-ribosylation factor 100.0 1.3E-28 4.6E-33 166.1 15.0 135 14-148 18-152 (181)
13 1zd9_A ADP-ribosylation factor 100.0 2.3E-28 7.9E-33 165.9 16.0 135 13-147 18-153 (188)
14 4bas_A ADP-ribosylation factor 100.0 1.7E-28 5.9E-33 167.4 13.3 136 13-148 13-157 (199)
15 2h57_A ADP-ribosylation factor 100.0 1.1E-27 3.9E-32 162.6 15.7 134 14-147 18-155 (190)
16 3o47_A ADP-ribosylation factor 100.0 8.2E-28 2.8E-32 176.4 15.4 136 14-149 162-297 (329)
17 3lvq_E ARF-GAP with SH3 domain 99.9 1.9E-26 6.5E-31 177.3 17.0 137 14-150 319-455 (497)
18 3q72_A GTP-binding protein RAD 99.9 6.3E-26 2.1E-30 150.4 14.8 132 17-148 2-141 (166)
19 3oes_A GTPase rhebl1; small GT 99.9 4.5E-26 1.5E-30 156.1 14.5 135 14-148 21-164 (201)
20 3t5g_A GTP-binding protein RHE 99.9 6.1E-26 2.1E-30 152.6 14.9 135 15-149 4-147 (181)
21 3kkq_A RAS-related protein M-R 99.9 1.1E-25 3.7E-30 151.7 14.7 136 14-149 15-159 (183)
22 3bc1_A RAS-related protein RAB 99.9 5.7E-26 2E-30 153.9 12.5 135 14-148 8-162 (195)
23 2nzj_A GTP-binding protein REM 99.9 1.3E-25 4.5E-30 149.9 13.9 134 15-148 2-146 (175)
24 3ihw_A Centg3; RAS, centaurin, 99.9 1.3E-25 4.4E-30 152.1 13.8 131 13-148 16-157 (184)
25 4dsu_A GTPase KRAS, isoform 2B 99.9 2.3E-25 8E-30 150.4 14.8 134 15-148 2-143 (189)
26 1z06_A RAS-related protein RAB 99.9 2.2E-25 7.5E-30 151.2 14.6 135 14-148 17-162 (189)
27 1r2q_A RAS-related protein RAB 99.9 1.2E-25 3.9E-30 149.4 12.9 134 14-148 3-146 (170)
28 2fn4_A P23, RAS-related protei 99.9 2.6E-25 9E-30 149.1 14.4 136 13-148 5-149 (181)
29 1u8z_A RAS-related protein RAL 99.9 8.5E-26 2.9E-30 149.6 11.8 134 15-148 2-144 (168)
30 1c1y_A RAS-related protein RAP 99.9 3.3E-25 1.1E-29 146.9 14.5 132 16-147 2-143 (167)
31 1ek0_A Protein (GTP-binding pr 99.9 1.8E-25 6.1E-30 148.5 13.2 132 16-148 2-146 (170)
32 1kao_A RAP2A; GTP-binding prot 99.9 4.9E-25 1.7E-29 145.8 15.3 133 16-148 2-143 (167)
33 3q3j_B RHO-related GTP-binding 99.9 5.9E-26 2E-30 157.2 10.9 133 14-148 24-179 (214)
34 2hxs_A RAB-26, RAS-related pro 99.9 1.2E-25 4.2E-30 150.6 12.1 135 14-148 3-150 (178)
35 3tkl_A RAS-related protein RAB 99.9 3.7E-25 1.3E-29 150.5 14.5 134 15-149 14-157 (196)
36 2hup_A RAS-related protein RAB 99.9 1.3E-25 4.5E-30 154.0 12.2 130 15-145 27-166 (201)
37 1x3s_A RAS-related protein RAB 99.9 5.1E-25 1.8E-29 149.5 14.7 134 15-148 13-155 (195)
38 2g6b_A RAS-related protein RAB 99.9 2.2E-25 7.4E-30 149.6 12.6 134 14-148 7-151 (180)
39 2f7s_A C25KG, RAS-related prot 99.9 1.7E-25 5.8E-30 154.7 12.3 134 15-148 23-176 (217)
40 3tw8_B RAS-related protein RAB 99.9 6.8E-25 2.3E-29 147.1 15.0 132 15-148 7-148 (181)
41 3reg_A RHO-like small GTPase; 99.9 1.8E-25 6.1E-30 152.2 12.1 132 14-146 20-162 (194)
42 2fg5_A RAB-22B, RAS-related pr 99.9 5.1E-25 1.7E-29 149.8 14.3 137 11-148 17-163 (192)
43 1z2a_A RAS-related protein RAB 99.9 6.1E-26 2.1E-30 150.5 9.4 132 15-148 3-144 (168)
44 2fu5_C RAS-related protein RAB 99.9 1.2E-25 4.2E-30 151.4 11.1 133 15-148 6-148 (183)
45 1z0f_A RAB14, member RAS oncog 99.9 4.6E-25 1.6E-29 147.7 13.6 136 12-148 10-155 (179)
46 1zbd_A Rabphilin-3A; G protein 99.9 8.2E-25 2.8E-29 149.8 15.1 133 15-148 6-148 (203)
47 2fh5_B SR-beta, signal recogni 99.9 4E-25 1.4E-29 152.5 13.7 125 15-139 5-136 (214)
48 2efe_B Small GTP-binding prote 99.9 7.6E-25 2.6E-29 147.1 14.7 135 13-148 8-152 (181)
49 3q85_A GTP-binding protein REM 99.9 4.3E-25 1.5E-29 146.8 13.3 132 17-148 2-144 (169)
50 1z0j_A RAB-22, RAS-related pro 99.9 1E-24 3.5E-29 144.9 15.0 133 15-148 4-146 (170)
51 2gf9_A RAS-related protein RAB 99.9 8.3E-25 2.8E-29 148.3 14.7 133 15-148 20-162 (189)
52 2atv_A RERG, RAS-like estrogen 99.9 1.8E-25 6.2E-30 152.4 11.4 139 9-148 20-167 (196)
53 3c5c_A RAS-like protein 12; GD 99.9 4.8E-25 1.7E-29 149.5 13.2 135 14-149 18-163 (187)
54 2oil_A CATX-8, RAS-related pro 99.9 1.3E-24 4.4E-29 147.7 15.2 133 15-148 23-165 (193)
55 2bov_A RAla, RAS-related prote 99.9 1.1E-24 3.8E-29 149.2 14.8 136 13-148 10-154 (206)
56 1m7b_A RND3/RHOE small GTP-bin 99.9 1.4E-25 4.7E-30 151.6 10.0 117 14-132 4-125 (184)
57 2bme_A RAB4A, RAS-related prot 99.9 9.4E-25 3.2E-29 147.3 14.1 133 15-148 8-150 (186)
58 3t1o_A Gliding protein MGLA; G 99.9 4.6E-25 1.6E-29 149.9 12.5 131 13-145 10-165 (198)
59 2ew1_A RAS-related protein RAB 99.9 7.9E-25 2.7E-29 150.3 13.7 133 15-148 24-166 (201)
60 2a9k_A RAS-related protein RAL 99.9 1.1E-24 3.9E-29 146.7 14.2 135 14-148 15-158 (187)
61 1g16_A RAS-related protein SEC 99.9 4E-25 1.4E-29 146.8 11.5 132 16-148 2-142 (170)
62 1z08_A RAS-related protein RAB 99.9 3.6E-25 1.2E-29 147.2 11.2 133 15-148 4-146 (170)
63 2bcg_Y Protein YP2, GTP-bindin 99.9 1.4E-24 4.9E-29 148.9 14.5 133 15-148 6-148 (206)
64 2iwr_A Centaurin gamma 1; ANK 99.9 7.7E-25 2.6E-29 146.9 12.5 112 15-131 5-121 (178)
65 3cbq_A GTP-binding protein REM 99.9 1.2E-24 4.1E-29 148.6 13.5 135 14-148 20-165 (195)
66 3dz8_A RAS-related protein RAB 99.9 1.9E-25 6.4E-30 151.8 9.3 133 15-148 21-163 (191)
67 2a5j_A RAS-related protein RAB 99.9 1.9E-24 6.3E-29 146.9 13.8 133 15-148 19-161 (191)
68 2ce2_X GTPase HRAS; signaling 99.9 3.6E-24 1.2E-28 141.4 14.5 133 16-148 2-142 (166)
69 2yc2_C IFT27, small RAB-relate 99.9 7.5E-26 2.6E-30 155.1 6.6 134 15-148 18-168 (208)
70 3cph_A RAS-related protein SEC 99.9 3.7E-24 1.3E-28 147.4 15.0 134 14-148 17-159 (213)
71 1gwn_A RHO-related GTP-binding 99.9 3.5E-25 1.2E-29 152.5 9.7 117 14-132 25-146 (205)
72 2p5s_A RAS and EF-hand domain 99.9 2.9E-25 1E-29 151.8 9.3 137 11-148 22-174 (199)
73 3clv_A RAB5 protein, putative; 99.9 4.2E-24 1.4E-28 145.6 15.0 131 15-148 5-181 (208)
74 2y8e_A RAB-protein 6, GH09086P 99.9 3E-24 1E-28 143.7 13.8 133 15-148 12-154 (179)
75 2atx_A Small GTP binding prote 99.9 8.3E-25 2.8E-29 148.8 11.1 116 15-132 16-136 (194)
76 2erx_A GTP-binding protein DI- 99.9 2.5E-24 8.6E-29 143.1 13.1 133 16-148 2-144 (172)
77 1wms_A RAB-9, RAB9, RAS-relate 99.9 3.5E-24 1.2E-28 143.4 13.6 118 15-132 5-130 (177)
78 2o52_A RAS-related protein RAB 99.9 1.1E-24 3.7E-29 149.2 11.2 133 15-148 23-165 (200)
79 3l0i_B RAS-related protein RAB 99.9 2.9E-25 1E-29 151.8 8.3 134 15-149 31-174 (199)
80 3cpj_B GTP-binding protein YPT 99.9 2.5E-24 8.7E-29 149.7 13.1 133 15-148 11-153 (223)
81 3bwd_D RAC-like GTP-binding pr 99.9 2.2E-25 7.4E-30 149.9 7.4 129 15-145 6-154 (182)
82 3con_A GTPase NRAS; structural 99.9 4.3E-24 1.5E-28 144.7 13.3 135 14-148 18-160 (190)
83 4gzl_A RAS-related C3 botulinu 99.9 7.7E-25 2.6E-29 150.4 9.5 120 13-133 26-149 (204)
84 2gco_A H9, RHO-related GTP-bin 99.9 1.7E-24 5.8E-29 148.3 10.9 120 13-133 21-144 (201)
85 2il1_A RAB12; G-protein, GDP, 99.9 5.7E-24 2E-28 144.7 13.3 119 14-133 23-146 (192)
86 3gj0_A GTP-binding nuclear pro 99.9 9.3E-25 3.2E-29 151.5 9.4 134 13-148 11-152 (221)
87 2j1l_A RHO-related GTP-binding 99.9 1.3E-24 4.3E-29 150.4 9.9 117 15-133 32-153 (214)
88 2q3h_A RAS homolog gene family 99.9 3.2E-24 1.1E-28 146.6 11.7 117 14-132 17-138 (201)
89 1ky3_A GTP-binding protein YPT 99.9 3.6E-24 1.2E-28 143.7 11.5 119 14-132 5-132 (182)
90 2j0v_A RAC-like GTP-binding pr 99.9 5.1E-25 1.7E-29 151.8 7.2 129 15-145 7-153 (212)
91 1vg8_A RAS-related protein RAB 99.9 5.4E-24 1.8E-28 145.9 12.0 120 14-133 5-132 (207)
92 2gf0_A GTP-binding protein DI- 99.9 6.4E-24 2.2E-28 144.6 12.2 134 15-148 6-148 (199)
93 1mh1_A RAC1; GTP-binding, GTPa 99.9 2.5E-24 8.7E-29 145.0 10.1 117 15-133 3-124 (186)
94 2fv8_A H6, RHO-related GTP-bin 99.9 8.2E-24 2.8E-28 145.5 12.5 119 14-133 22-144 (207)
95 2g3y_A GTP-binding protein GEM 99.9 1.2E-23 3.9E-28 145.6 12.6 134 15-148 35-180 (211)
96 4djt_A GTP-binding nuclear pro 99.9 3.7E-24 1.3E-28 148.1 10.1 118 15-133 9-132 (218)
97 2zej_A Dardarin, leucine-rich 99.9 8.2E-25 2.8E-29 148.0 6.0 116 17-134 2-128 (184)
98 2ged_A SR-beta, signal recogni 99.9 2.5E-24 8.6E-29 146.2 8.0 126 14-144 45-182 (193)
99 3llu_A RAS-related GTP-binding 99.9 1.1E-23 3.7E-28 143.7 10.7 119 12-132 15-143 (196)
100 3r7w_A Gtpase1, GTP-binding pr 99.9 1.8E-23 6.1E-28 152.1 12.3 129 16-144 2-152 (307)
101 3r7w_B Gtpase2, GTP-binding pr 99.9 1.3E-24 4.5E-29 158.1 5.6 112 19-133 1-121 (331)
102 1nrj_B SR-beta, signal recogni 99.9 7.7E-24 2.6E-28 146.5 8.2 119 13-136 8-138 (218)
103 2cjw_A GTP-binding protein GEM 99.9 7.9E-23 2.7E-27 139.3 12.8 134 15-148 4-149 (192)
104 3th5_A RAS-related C3 botulinu 99.8 1.1E-24 3.6E-29 149.5 0.0 119 14-133 27-149 (204)
105 2lkc_A Translation initiation 99.9 7.8E-22 2.7E-26 132.0 14.0 116 13-133 4-122 (178)
106 2wji_A Ferrous iron transport 99.9 7.5E-22 2.6E-26 131.2 13.4 126 16-148 2-142 (165)
107 2f9l_A RAB11B, member RAS onco 99.9 4.6E-21 1.6E-25 131.0 14.5 133 15-148 3-145 (199)
108 2wjg_A FEOB, ferrous iron tran 99.9 3E-21 1E-25 130.4 13.2 127 15-148 5-146 (188)
109 2dyk_A GTP-binding protein; GT 99.9 1.2E-21 4.2E-26 128.9 10.4 122 18-145 2-135 (161)
110 3a1s_A Iron(II) transport prot 99.9 3.7E-21 1.3E-25 136.7 12.7 128 15-149 3-145 (258)
111 2gj8_A MNME, tRNA modification 99.9 1.9E-21 6.6E-26 130.2 9.8 116 15-132 2-129 (172)
112 2wkq_A NPH1-1, RAS-related C3 99.9 3.7E-21 1.3E-25 140.4 11.8 119 14-133 152-274 (332)
113 3iby_A Ferrous iron transport 99.9 4E-21 1.4E-25 136.4 11.6 124 18-148 2-144 (256)
114 3i8s_A Ferrous iron transport 99.9 5.9E-21 2E-25 136.8 12.3 126 16-148 2-146 (274)
115 2cxx_A Probable GTP-binding pr 99.9 2.4E-22 8.1E-27 135.8 4.4 127 18-146 2-152 (190)
116 2qu8_A Putative nucleolar GTP- 99.9 2E-20 6.8E-25 130.4 14.2 117 15-133 27-157 (228)
117 1oix_A RAS-related protein RAB 99.9 1.9E-20 6.4E-25 127.3 13.5 133 15-148 27-169 (191)
118 1wf3_A GTP-binding protein; GT 99.8 2.8E-20 9.6E-25 134.9 14.0 125 16-143 6-143 (301)
119 3iev_A GTP-binding protein ERA 99.8 3.2E-20 1.1E-24 134.9 14.2 114 14-131 7-135 (308)
120 1svi_A GTP-binding protein YSX 99.8 9.7E-21 3.3E-25 128.5 10.4 116 14-135 20-151 (195)
121 3b1v_A Ferrous iron uptake tra 99.8 7.6E-21 2.6E-25 136.0 10.1 125 16-148 2-141 (272)
122 3c5h_A Glucocorticoid receptor 99.8 7.5E-22 2.6E-26 140.0 4.0 120 14-133 16-213 (255)
123 3def_A T7I23.11 protein; chlor 99.8 2.8E-20 9.5E-25 132.4 11.6 116 15-131 34-164 (262)
124 3lxw_A GTPase IMAP family memb 99.8 8.5E-20 2.9E-24 128.9 13.5 120 13-133 17-154 (247)
125 3k53_A Ferrous iron transport 99.8 8.1E-20 2.8E-24 130.6 13.1 127 16-148 2-143 (271)
126 3pqc_A Probable GTP-binding pr 99.8 2.5E-20 8.7E-25 126.2 9.6 115 13-134 19-149 (195)
127 3dpu_A RAB family protein; roc 99.8 4E-20 1.4E-24 143.3 10.6 116 14-134 38-166 (535)
128 4dhe_A Probable GTP-binding pr 99.8 3.5E-20 1.2E-24 128.3 7.1 116 14-134 26-160 (223)
129 4fid_A G protein alpha subunit 99.8 1.4E-19 4.9E-24 132.5 10.3 86 47-132 147-242 (340)
130 3ohm_A Guanine nucleotide-bind 99.8 4.7E-19 1.6E-23 129.3 11.6 86 47-132 153-248 (327)
131 3lxx_A GTPase IMAP family memb 99.8 1.8E-19 6E-24 126.5 8.7 118 14-133 26-160 (239)
132 3gee_A MNME, tRNA modification 99.8 2.3E-19 8E-24 137.0 9.4 115 15-135 231-360 (476)
133 1cip_A Protein (guanine nucleo 99.8 6E-19 2.1E-23 130.2 10.8 85 47-131 179-273 (353)
134 1mky_A Probable GTP-binding pr 99.8 1.2E-18 4E-23 132.3 12.1 111 18-133 2-125 (439)
135 2xtp_A GTPase IMAP family memb 99.8 4.1E-18 1.4E-22 120.8 14.0 119 14-133 19-154 (260)
136 3qq5_A Small GTP-binding prote 99.8 1.9E-19 6.4E-24 135.6 7.3 128 14-148 31-173 (423)
137 1h65_A Chloroplast outer envel 99.8 1E-18 3.5E-23 124.8 10.3 118 15-133 37-169 (270)
138 2hjg_A GTP-binding protein ENG 99.8 3.5E-19 1.2E-23 135.0 7.8 112 17-133 3-126 (436)
139 1lnz_A SPO0B-associated GTP-bi 99.8 9.8E-19 3.3E-23 128.6 9.7 127 18-144 159-301 (342)
140 2hjg_A GTP-binding protein ENG 99.8 1.1E-18 3.8E-23 132.3 9.9 114 16-134 174-302 (436)
141 3sjy_A Translation initiation 99.8 1.7E-18 5.8E-23 130.1 10.7 119 13-134 4-145 (403)
142 1xzp_A Probable tRNA modificat 99.8 1.4E-18 4.9E-23 132.8 10.2 120 16-142 242-374 (482)
143 3tr5_A RF-3, peptide chain rel 99.8 7.3E-18 2.5E-22 130.2 13.6 126 15-145 11-164 (528)
144 2e87_A Hypothetical protein PH 99.8 2.1E-17 7.3E-22 122.3 14.5 118 15-134 165-296 (357)
145 1ega_A Protein (GTP-binding pr 99.8 3.4E-18 1.2E-22 123.9 9.3 112 15-132 6-130 (301)
146 2h5e_A Peptide chain release f 99.7 8.2E-18 2.8E-22 130.0 11.3 127 15-146 11-165 (529)
147 4dcu_A GTP-binding protein ENG 99.7 5E-19 1.7E-23 134.9 4.3 115 14-133 20-146 (456)
148 2xtz_A Guanine nucleotide-bind 99.7 4.4E-18 1.5E-22 125.6 8.8 74 59-132 181-264 (354)
149 3p26_A Elongation factor 1 alp 99.7 1.2E-18 4.3E-23 133.5 6.0 117 14-132 30-185 (483)
150 1zun_B Sulfate adenylate trans 99.7 2.7E-17 9.1E-22 124.6 13.0 122 8-133 15-172 (434)
151 4dcu_A GTP-binding protein ENG 99.7 5.3E-18 1.8E-22 129.2 8.9 115 15-134 193-322 (456)
152 1jny_A EF-1-alpha, elongation 99.7 6.5E-18 2.2E-22 128.0 9.3 114 15-132 4-158 (435)
153 3izq_1 HBS1P, elongation facto 99.7 3E-18 1E-22 134.4 7.6 116 15-132 165-319 (611)
154 3t5d_A Septin-7; GTP-binding p 99.7 2.3E-17 7.8E-22 118.1 11.5 114 16-134 7-160 (274)
155 3j2k_7 ERF3, eukaryotic polype 99.7 5.8E-17 2E-21 122.9 13.6 115 14-132 14-169 (439)
156 3cb4_D GTP-binding protein LEP 99.7 2.8E-17 9.7E-22 128.4 12.0 126 16-146 3-154 (599)
157 2c78_A Elongation factor TU-A; 99.7 2.6E-17 9E-22 123.7 11.3 113 15-132 9-142 (405)
158 3geh_A MNME, tRNA modification 99.7 5.9E-18 2E-22 128.9 7.8 112 15-133 222-345 (462)
159 2qpt_A EH domain-containing pr 99.7 8.2E-18 2.8E-22 130.6 8.7 123 15-141 63-241 (550)
160 1dar_A EF-G, elongation factor 99.7 4.6E-17 1.6E-21 129.4 13.1 126 15-145 10-159 (691)
161 2ywe_A GTP-binding protein LEP 99.7 6.9E-17 2.4E-21 126.1 13.1 126 15-145 4-155 (600)
162 1f60_A Elongation factor EEF1A 99.7 2.1E-17 7.2E-22 125.9 8.7 114 15-132 5-159 (458)
163 1r5b_A Eukaryotic peptide chai 99.7 8.1E-17 2.8E-21 123.0 11.5 116 13-132 39-195 (467)
164 1wb1_A Translation elongation 99.7 2.9E-17 9.9E-22 125.8 9.0 111 15-133 17-140 (482)
165 2qtf_A Protein HFLX, GTP-bindi 99.7 7.3E-17 2.5E-21 119.6 10.6 116 17-134 178-308 (364)
166 2elf_A Protein translation elo 99.7 3.7E-17 1.3E-21 121.5 9.0 101 19-130 23-125 (370)
167 1g7s_A Translation initiation 99.7 2.3E-17 7.8E-22 129.0 7.9 110 15-132 3-136 (594)
168 1s0u_A EIF-2-gamma, translatio 99.7 1.6E-16 5.4E-21 119.5 12.1 114 14-134 5-151 (408)
169 1d2e_A Elongation factor TU (E 99.7 8E-17 2.7E-21 120.8 10.3 112 16-132 2-133 (397)
170 2xex_A Elongation factor G; GT 99.7 2.1E-16 7E-21 125.7 13.1 127 14-145 7-157 (693)
171 1n0u_A EF-2, elongation factor 99.7 1.4E-16 4.9E-21 128.9 12.2 113 15-132 17-164 (842)
172 1jwy_B Dynamin A GTPase domain 99.7 1.1E-16 3.7E-21 116.3 10.4 118 15-135 22-215 (315)
173 3izy_P Translation initiation 99.7 1.9E-18 6.6E-23 133.3 1.0 114 15-133 2-119 (537)
174 1mky_A Probable GTP-binding pr 99.7 2.1E-16 7.2E-21 119.9 11.9 113 16-133 179-307 (439)
175 1kk1_A EIF2gamma; initiation o 99.7 8.6E-17 3E-21 121.0 9.6 115 13-134 6-153 (410)
176 1zo1_I IF2, translation initia 99.7 1.1E-17 3.8E-22 128.1 3.9 111 15-133 2-118 (501)
177 2aka_B Dynamin-1; fusion prote 99.7 3.9E-16 1.3E-20 112.5 11.4 116 15-134 24-208 (299)
178 2qag_A Septin-2, protein NEDD5 99.7 3.9E-17 1.3E-21 121.1 6.1 115 15-134 35-190 (361)
179 2rdo_7 EF-G, elongation factor 99.7 1E-15 3.5E-20 121.9 14.6 125 15-144 8-163 (704)
180 3t34_A Dynamin-related protein 99.7 4E-16 1.4E-20 115.6 10.9 115 16-133 33-218 (360)
181 2dy1_A Elongation factor G; tr 99.6 2.7E-15 9.3E-20 118.9 13.8 124 15-144 7-154 (665)
182 3mca_A HBS1, elongation factor 99.6 2.2E-17 7.6E-22 129.2 0.9 116 14-132 174-329 (592)
183 1azs_C GS-alpha; complex (lyas 99.6 1.3E-15 4.4E-20 113.9 9.8 85 48-132 204-298 (402)
184 2j69_A Bacterial dynamin-like 99.6 8.6E-16 2.9E-20 122.2 7.8 116 14-133 66-245 (695)
185 1zcb_A G alpha I/13; GTP-bindi 99.6 3.3E-15 1.1E-19 110.6 9.2 86 46-131 186-281 (362)
186 3avx_A Elongation factor TS, e 99.6 3.6E-15 1.2E-19 122.6 9.4 113 15-132 294-426 (1289)
187 1wxq_A GTP-binding protein; st 99.6 1.7E-15 6E-20 113.4 7.0 80 18-97 1-114 (397)
188 3vqt_A RF-3, peptide chain rel 99.6 5.5E-14 1.9E-18 109.1 13.4 126 15-145 29-182 (548)
189 1pui_A ENGB, probable GTP-bind 99.6 1.6E-14 5.5E-19 98.9 8.7 113 15-133 24-152 (210)
190 2x2e_A Dynamin-1; nitration, h 99.5 6.1E-14 2.1E-18 103.6 10.4 116 15-134 29-213 (353)
191 1jal_A YCHF protein; nucleotid 99.5 2.6E-13 8.9E-18 100.2 13.2 79 18-96 3-108 (363)
192 4a9a_A Ribosome-interacting GT 99.5 1.6E-13 5.6E-18 101.8 10.3 112 18-131 73-195 (376)
193 1udx_A The GTP-binding protein 99.5 1.6E-13 5.6E-18 103.1 9.9 115 18-133 158-284 (416)
194 2qag_C Septin-7; cell cycle, c 99.5 1.8E-13 6E-18 103.0 9.2 115 15-133 29-182 (418)
195 2qnr_A Septin-2, protein NEDD5 99.5 1.7E-13 5.9E-18 99.2 8.1 129 15-148 16-192 (301)
196 4fn5_A EF-G 1, elongation fact 99.4 3.5E-12 1.2E-16 101.8 13.5 125 15-144 11-166 (709)
197 3j25_A Tetracycline resistance 99.4 2.6E-13 8.9E-18 107.1 5.9 124 17-145 2-149 (638)
198 1u0l_A Probable GTPase ENGC; p 99.4 1.5E-13 5.2E-18 99.5 3.3 106 32-144 32-144 (301)
199 2ohf_A Protein OLA1, GTP-bindi 99.3 1.4E-12 4.8E-17 97.3 6.6 85 15-99 20-131 (396)
200 3p32_A Probable GTPase RV1496/ 99.3 1.1E-12 3.7E-17 97.0 5.7 108 15-134 77-233 (355)
201 3l82_B F-box only protein 4; T 99.3 2E-12 6.9E-17 88.2 6.3 147 5-153 4-197 (227)
202 2www_A Methylmalonic aciduria 99.3 1E-11 3.5E-16 91.6 7.3 106 16-133 73-227 (349)
203 3zvr_A Dynamin-1; hydrolase, D 99.3 5.8E-11 2E-15 94.9 11.9 116 15-134 49-233 (772)
204 1yrb_A ATP(GTP)binding protein 99.2 2.9E-11 1E-15 85.4 5.6 73 61-134 109-187 (262)
205 2dby_A GTP-binding protein; GD 99.2 6.9E-11 2.3E-15 87.7 7.7 79 18-96 2-111 (368)
206 2p67_A LAO/AO transport system 99.2 1.5E-11 5.3E-16 90.4 3.6 63 59-133 147-209 (341)
207 3l2o_B F-box only protein 4; s 99.1 2E-11 6.8E-16 87.1 3.6 84 68-153 194-282 (312)
208 2wsm_A Hydrogenase expression/ 99.1 7.6E-11 2.6E-15 81.1 6.4 107 15-133 28-169 (221)
209 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 1.1E-09 3.9E-14 81.7 9.6 82 15-96 18-127 (392)
210 3ec1_A YQEH GTPase; atnos1, at 99.0 1.5E-10 5.2E-15 86.0 3.1 113 16-134 161-290 (369)
211 2j37_W Signal recognition part 98.9 4.3E-08 1.5E-12 75.4 13.7 123 16-146 100-269 (504)
212 2qag_B Septin-6, protein NEDD5 98.9 1.1E-08 3.8E-13 77.0 10.2 114 18-137 43-195 (427)
213 3sop_A Neuronal-specific septi 98.9 1.8E-09 6.3E-14 76.9 5.6 114 17-135 2-157 (270)
214 3h2y_A GTPase family protein; 98.9 9.9E-10 3.4E-14 81.5 3.9 114 16-135 159-290 (368)
215 2qm8_A GTPase/ATPase; G protei 98.8 6.2E-09 2.1E-13 76.4 6.4 106 15-132 53-207 (337)
216 3cnl_A YLQF, putative uncharac 98.7 9.2E-09 3.2E-13 73.0 3.2 55 18-73 100-156 (262)
217 2hf9_A Probable hydrogenase ni 98.7 8.5E-08 2.9E-12 66.0 7.9 27 15-41 36-62 (226)
218 1puj_A YLQF, conserved hypothe 98.6 3.7E-08 1.3E-12 70.6 5.3 57 15-72 118-176 (282)
219 2yv5_A YJEQ protein; hydrolase 98.5 1.1E-07 3.8E-12 68.7 5.6 59 71-133 66-125 (302)
220 2v3c_C SRP54, signal recogniti 98.4 7E-07 2.4E-11 67.6 7.6 121 17-145 99-266 (432)
221 3szr_A Interferon-induced GTP- 98.4 2.8E-07 9.7E-12 72.5 5.3 24 18-41 46-69 (608)
222 1f5n_A Interferon-induced guan 98.3 7.5E-07 2.6E-11 69.7 6.1 60 14-73 35-103 (592)
223 1tq4_A IIGP1, interferon-induc 98.3 1.7E-06 5.8E-11 65.1 7.3 109 16-131 68-188 (413)
224 3dm5_A SRP54, signal recogniti 98.3 2.3E-06 7.9E-11 64.8 7.6 123 16-145 99-267 (443)
225 1j8m_F SRP54, signal recogniti 98.1 6.9E-06 2.3E-10 59.2 6.8 80 59-146 179-268 (297)
226 1bif_A 6-phosphofructo-2-kinas 98.1 3.2E-07 1.1E-11 70.1 -0.8 94 14-108 36-143 (469)
227 3kl4_A SRP54, signal recogniti 98.0 2E-05 6.9E-10 59.5 7.3 66 60-132 179-252 (433)
228 2xxa_A Signal recognition part 97.9 9.4E-05 3.2E-09 56.0 9.0 80 59-146 182-269 (433)
229 3e70_C DPA, signal recognition 97.8 6.3E-05 2.2E-09 54.9 7.1 24 16-39 128-151 (328)
230 1puj_A YLQF, conserved hypothe 97.8 1.5E-05 5.1E-10 57.0 3.3 68 65-139 3-71 (282)
231 1ye8_A Protein THEP1, hypothet 97.6 2.9E-05 1E-09 51.7 3.1 23 18-40 1-23 (178)
232 2bbw_A Adenylate kinase 4, AK4 97.6 3.3E-05 1.1E-09 53.9 3.5 33 6-38 16-48 (246)
233 4dzz_A Plasmid partitioning pr 97.6 0.0008 2.7E-08 45.1 9.3 85 60-148 75-162 (206)
234 3q5d_A Atlastin-1; G protein, 97.5 9.7E-05 3.3E-09 56.1 5.0 26 15-40 65-90 (447)
235 1kgd_A CASK, peripheral plasma 97.5 4.4E-05 1.5E-09 50.7 2.8 23 18-40 6-28 (180)
236 3h2y_A GTPase family protein; 97.5 4.5E-05 1.5E-09 56.5 3.0 58 70-134 55-112 (368)
237 3ec1_A YQEH GTPase; atnos1, at 97.5 4E-05 1.4E-09 56.8 2.6 57 70-133 57-113 (369)
238 1lvg_A Guanylate kinase, GMP k 97.5 5.3E-05 1.8E-09 51.2 2.8 22 18-39 5-26 (198)
239 3a00_A Guanylate kinase, GMP k 97.4 7.1E-05 2.4E-09 50.0 2.8 22 19-40 3-24 (186)
240 3tr0_A Guanylate kinase, GMP k 97.4 7.3E-05 2.5E-09 50.3 2.8 23 18-40 8-30 (205)
241 1znw_A Guanylate kinase, GMP k 97.4 7.9E-05 2.7E-09 50.6 2.8 24 17-40 20-43 (207)
242 1zp6_A Hypothetical protein AT 97.4 8.7E-05 3E-09 49.4 2.9 24 17-40 9-32 (191)
243 1s96_A Guanylate kinase, GMP k 97.4 8.3E-05 2.8E-09 51.2 2.8 25 16-40 15-39 (219)
244 4gp7_A Metallophosphoesterase; 97.4 8.1E-05 2.8E-09 49.1 2.6 20 19-38 11-30 (171)
245 3tau_A Guanylate kinase, GMP k 97.4 0.00013 4.3E-09 49.6 3.6 26 15-40 6-31 (208)
246 1z6g_A Guanylate kinase; struc 97.4 0.0001 3.5E-09 50.6 2.8 24 17-40 23-46 (218)
247 3ec2_A DNA replication protein 97.3 0.00017 5.9E-09 47.6 3.8 26 15-40 36-61 (180)
248 2ffh_A Protein (FFH); SRP54, s 97.3 0.00058 2E-08 51.5 6.9 80 60-146 180-266 (425)
249 3tif_A Uncharacterized ABC tra 97.3 0.00012 4.1E-09 50.9 2.9 23 18-40 32-54 (235)
250 3c8u_A Fructokinase; YP_612366 97.3 0.00014 4.7E-09 49.4 3.1 25 15-39 20-44 (208)
251 3ney_A 55 kDa erythrocyte memb 97.3 0.00013 4.3E-09 49.5 2.8 25 16-40 18-42 (197)
252 1ex7_A Guanylate kinase; subst 97.3 0.00015 5E-09 48.7 2.9 21 20-40 4-24 (186)
253 1htw_A HI0065; nucleotide-bind 97.3 0.00015 5.1E-09 47.4 2.8 24 18-41 34-57 (158)
254 3asz_A Uridine kinase; cytidin 97.3 0.00017 5.7E-09 48.9 3.1 25 15-39 4-28 (211)
255 1jbk_A CLPB protein; beta barr 97.3 0.00033 1.1E-08 46.0 4.5 34 7-40 33-66 (195)
256 2pcj_A ABC transporter, lipopr 97.3 0.00015 5.2E-09 50.0 2.8 22 19-40 32-53 (224)
257 2onk_A Molybdate/tungstate ABC 97.2 0.00019 6.5E-09 50.1 3.0 23 18-40 25-47 (240)
258 2j41_A Guanylate kinase; GMP, 97.2 0.00024 8.3E-09 47.7 3.4 24 17-40 6-29 (207)
259 1kag_A SKI, shikimate kinase I 97.2 0.00019 6.4E-09 47.0 2.8 22 18-39 5-26 (173)
260 3gfo_A Cobalt import ATP-bindi 97.2 0.00019 6.3E-09 51.2 2.9 22 19-40 36-57 (275)
261 3lw7_A Adenylate kinase relate 97.2 0.00023 7.8E-09 46.3 3.2 20 18-37 2-21 (179)
262 1b0u_A Histidine permease; ABC 97.2 0.00019 6.5E-09 50.7 2.9 22 19-40 34-55 (262)
263 1aky_A Adenylate kinase; ATP:A 97.2 0.00024 8.3E-09 48.5 3.4 25 15-39 2-26 (220)
264 2qor_A Guanylate kinase; phosp 97.2 0.00019 6.5E-09 48.5 2.8 24 16-39 11-34 (204)
265 1sgw_A Putative ABC transporte 97.2 0.0002 6.8E-09 49.1 2.9 22 19-40 37-58 (214)
266 2cbz_A Multidrug resistance-as 97.2 0.0002 6.9E-09 49.8 2.9 23 18-40 32-54 (237)
267 2bwj_A Adenylate kinase 5; pho 97.2 0.00025 8.7E-09 47.3 3.3 23 17-39 12-34 (199)
268 1uj2_A Uridine-cytidine kinase 97.2 0.00023 7.9E-09 49.7 3.2 39 1-39 3-44 (252)
269 2bdt_A BH3686; alpha-beta prot 97.2 0.00021 7.1E-09 47.6 2.8 21 19-39 4-24 (189)
270 1g6h_A High-affinity branched- 97.2 0.00021 7E-09 50.4 2.9 22 19-40 35-56 (257)
271 4g1u_C Hemin import ATP-bindin 97.2 0.00021 7.2E-09 50.6 2.9 23 18-40 38-60 (266)
272 2eyu_A Twitching motility prot 97.2 0.00022 7.4E-09 50.4 2.9 25 15-39 23-47 (261)
273 3t61_A Gluconokinase; PSI-biol 97.2 0.00025 8.5E-09 47.8 3.1 24 16-39 17-40 (202)
274 3kb2_A SPBC2 prophage-derived 97.2 0.00023 7.8E-09 46.4 2.8 21 19-39 3-23 (173)
275 2rcn_A Probable GTPase ENGC; Y 97.2 0.00025 8.5E-09 52.3 3.2 26 17-42 215-240 (358)
276 3fb4_A Adenylate kinase; psych 97.2 0.00027 9.2E-09 48.0 3.2 21 18-38 1-21 (216)
277 2pze_A Cystic fibrosis transme 97.1 0.00024 8.2E-09 49.2 2.9 22 19-40 36-57 (229)
278 1mv5_A LMRA, multidrug resista 97.1 0.00026 9E-09 49.4 3.1 23 18-40 29-51 (243)
279 2olj_A Amino acid ABC transpor 97.1 0.00023 8E-09 50.3 2.9 23 18-40 51-73 (263)
280 1ji0_A ABC transporter; ATP bi 97.1 0.00024 8.2E-09 49.5 2.9 22 19-40 34-55 (240)
281 3trf_A Shikimate kinase, SK; a 97.1 0.0003 1E-08 46.6 3.3 22 17-38 5-26 (185)
282 2ff7_A Alpha-hemolysin translo 97.1 0.00027 9.2E-09 49.5 3.2 23 18-40 36-58 (247)
283 1ly1_A Polynucleotide kinase; 97.1 0.00028 9.7E-09 46.3 3.1 22 18-39 3-24 (181)
284 3dl0_A Adenylate kinase; phosp 97.1 0.00029 9.9E-09 47.9 3.2 22 18-39 1-22 (216)
285 2d2e_A SUFC protein; ABC-ATPas 97.1 0.00026 8.9E-09 49.6 3.0 22 19-40 31-52 (250)
286 1vpl_A ABC transporter, ATP-bi 97.1 0.00025 8.6E-09 49.9 2.9 22 19-40 43-64 (256)
287 2qi9_C Vitamin B12 import ATP- 97.1 0.00026 8.8E-09 49.7 2.9 23 18-40 27-49 (249)
288 4eun_A Thermoresistant glucoki 97.1 0.00033 1.1E-08 47.2 3.3 24 16-39 28-51 (200)
289 1t9h_A YLOQ, probable GTPase E 97.1 0.0008 2.7E-08 48.6 5.5 51 80-134 82-133 (307)
290 3b85_A Phosphate starvation-in 97.1 0.00021 7.2E-09 48.8 2.3 23 18-40 23-45 (208)
291 2ghi_A Transport protein; mult 97.1 0.00028 9.4E-09 49.8 2.9 23 18-40 47-69 (260)
292 2p65_A Hypothetical protein PF 97.1 0.00042 1.4E-08 45.4 3.7 34 7-40 33-66 (187)
293 2zu0_C Probable ATP-dependent 97.1 0.00028 9.7E-09 49.9 3.0 23 18-40 47-69 (267)
294 1cke_A CK, MSSA, protein (cyti 97.1 0.00036 1.2E-08 47.6 3.4 23 17-39 5-27 (227)
295 2i3b_A HCR-ntpase, human cance 97.1 0.00026 9E-09 47.5 2.6 22 19-40 3-24 (189)
296 2ixe_A Antigen peptide transpo 97.1 0.00029 9.9E-09 50.0 2.9 22 19-40 47-68 (271)
297 2ihy_A ABC transporter, ATP-bi 97.1 0.00029 9.8E-09 50.3 2.9 23 18-40 48-70 (279)
298 3n70_A Transport activator; si 97.1 0.00077 2.6E-08 43.0 4.7 27 14-40 21-47 (145)
299 2if2_A Dephospho-COA kinase; a 97.1 0.00033 1.1E-08 47.1 3.1 22 18-39 2-23 (204)
300 2yz2_A Putative ABC transporte 97.1 0.00031 1.1E-08 49.7 2.9 22 19-40 35-56 (266)
301 3tlx_A Adenylate kinase 2; str 97.1 0.00052 1.8E-08 47.8 4.0 25 15-39 27-51 (243)
302 2nq2_C Hypothetical ABC transp 97.1 0.00031 1.1E-08 49.4 2.8 22 19-40 33-54 (253)
303 1knq_A Gluconate kinase; ALFA/ 97.1 0.00042 1.4E-08 45.5 3.3 23 17-39 8-30 (175)
304 2cdn_A Adenylate kinase; phosp 97.0 0.00048 1.6E-08 46.3 3.6 25 15-39 18-42 (201)
305 3vaa_A Shikimate kinase, SK; s 97.0 0.00043 1.5E-08 46.5 3.3 22 17-38 25-46 (199)
306 3cm0_A Adenylate kinase; ATP-b 97.0 0.00038 1.3E-08 46.1 3.0 22 17-38 4-25 (186)
307 2rhm_A Putative kinase; P-loop 97.0 0.00043 1.5E-08 46.0 3.3 23 17-39 5-27 (193)
308 1qhx_A CPT, protein (chloramph 97.0 0.00036 1.2E-08 45.8 2.9 22 18-39 4-25 (178)
309 2ehv_A Hypothetical protein PH 97.0 0.00036 1.2E-08 48.2 2.9 22 17-38 30-51 (251)
310 1kht_A Adenylate kinase; phosp 97.0 0.00043 1.5E-08 45.8 3.2 23 17-39 3-25 (192)
311 2v9p_A Replication protein E1; 97.0 0.00037 1.3E-08 50.3 3.0 25 15-39 124-148 (305)
312 1y63_A LMAJ004144AAA protein; 97.0 0.00051 1.7E-08 45.6 3.5 25 16-40 9-33 (184)
313 3lnc_A Guanylate kinase, GMP k 97.0 0.00022 7.4E-09 49.2 1.7 23 18-40 28-51 (231)
314 3tqc_A Pantothenate kinase; bi 97.0 0.00056 1.9E-08 49.7 4.0 29 10-38 85-113 (321)
315 4a74_A DNA repair and recombin 97.0 0.00035 1.2E-08 47.6 2.8 22 18-39 26-47 (231)
316 1u0l_A Probable GTPase ENGC; p 97.0 0.00035 1.2E-08 50.3 2.8 24 18-41 170-193 (301)
317 3cnl_A YLQF, putative uncharac 97.0 0.00019 6.4E-09 50.7 1.4 58 68-134 4-62 (262)
318 2pjz_A Hypothetical protein ST 97.0 0.00043 1.5E-08 48.9 3.1 24 18-41 31-54 (263)
319 3uie_A Adenylyl-sulfate kinase 97.0 0.00048 1.6E-08 46.4 3.2 25 15-39 23-47 (200)
320 1uf9_A TT1252 protein; P-loop, 97.0 0.00048 1.6E-08 46.1 3.2 27 14-40 5-31 (203)
321 3sr0_A Adenylate kinase; phosp 97.0 0.00051 1.8E-08 46.8 3.3 22 18-39 1-22 (206)
322 2jaq_A Deoxyguanosine kinase; 97.0 0.00049 1.7E-08 46.1 3.2 21 19-39 2-22 (205)
323 1t9h_A YLOQ, probable GTPase E 97.0 0.00013 4.4E-09 52.8 0.3 25 17-41 173-197 (307)
324 1jjv_A Dephospho-COA kinase; P 97.0 0.00049 1.7E-08 46.4 3.1 22 18-39 3-24 (206)
325 1nks_A Adenylate kinase; therm 97.0 0.00048 1.6E-08 45.6 3.0 21 19-39 3-23 (194)
326 2yv5_A YJEQ protein; hydrolase 97.0 0.00045 1.5E-08 49.8 3.0 22 17-38 165-186 (302)
327 1np6_A Molybdopterin-guanine d 96.9 0.00047 1.6E-08 45.7 2.8 23 18-40 7-29 (174)
328 1e4v_A Adenylate kinase; trans 96.9 0.00053 1.8E-08 46.6 3.1 22 18-39 1-22 (214)
329 2v54_A DTMP kinase, thymidylat 96.9 0.00062 2.1E-08 45.6 3.5 25 16-40 3-27 (204)
330 2x8a_A Nuclear valosin-contain 96.9 0.0009 3.1E-08 47.5 4.5 23 18-40 45-67 (274)
331 3jvv_A Twitching mobility prot 96.9 0.00058 2E-08 50.4 3.5 26 15-40 121-146 (356)
332 1zd8_A GTP:AMP phosphotransfer 96.9 0.00055 1.9E-08 47.0 3.2 23 16-38 6-28 (227)
333 2yvu_A Probable adenylyl-sulfa 96.9 0.00062 2.1E-08 45.2 3.4 25 15-39 11-35 (186)
334 3be4_A Adenylate kinase; malar 96.9 0.00059 2E-08 46.5 3.3 24 16-39 4-27 (217)
335 2jeo_A Uridine-cytidine kinase 96.9 0.00057 1.9E-08 47.5 3.3 24 16-39 24-47 (245)
336 2c95_A Adenylate kinase 1; tra 96.9 0.00064 2.2E-08 45.2 3.4 23 16-38 8-30 (196)
337 1tev_A UMP-CMP kinase; ploop, 96.9 0.00056 1.9E-08 45.4 3.1 22 17-38 3-24 (196)
338 3fvq_A Fe(3+) IONS import ATP- 96.9 0.00048 1.6E-08 50.8 2.9 23 19-41 32-54 (359)
339 1lw7_A Transcriptional regulat 96.9 0.00039 1.3E-08 51.3 2.4 24 17-40 170-193 (365)
340 2kjq_A DNAA-related protein; s 96.9 0.00037 1.3E-08 44.9 2.1 25 16-40 35-59 (149)
341 3aez_A Pantothenate kinase; tr 96.9 0.00056 1.9E-08 49.5 3.2 25 15-39 88-112 (312)
342 2bbs_A Cystic fibrosis transme 96.9 0.00054 1.8E-08 49.1 3.1 23 18-40 65-87 (290)
343 2plr_A DTMP kinase, probable t 96.9 0.00061 2.1E-08 45.8 3.2 23 17-39 4-26 (213)
344 1zak_A Adenylate kinase; ATP:A 96.9 0.00056 1.9E-08 46.7 3.0 23 16-38 4-26 (222)
345 1rz3_A Hypothetical protein rb 96.9 0.0011 3.8E-08 44.6 4.5 25 15-39 20-44 (201)
346 2qt1_A Nicotinamide riboside k 96.9 0.00068 2.3E-08 45.8 3.4 26 15-40 19-44 (207)
347 1ixz_A ATP-dependent metallopr 96.9 0.0011 3.6E-08 46.2 4.5 23 18-40 50-72 (254)
348 1nn5_A Similar to deoxythymidy 96.9 0.0007 2.4E-08 45.7 3.4 24 16-39 8-31 (215)
349 3bos_A Putative DNA replicatio 96.9 0.0011 3.9E-08 45.2 4.5 24 16-39 51-74 (242)
350 2wwf_A Thymidilate kinase, put 96.9 0.00072 2.5E-08 45.6 3.5 24 16-39 9-32 (212)
351 1sq5_A Pantothenate kinase; P- 96.9 0.00085 2.9E-08 48.4 4.0 25 15-39 78-102 (308)
352 3iij_A Coilin-interacting nucl 96.9 0.00065 2.2E-08 44.8 3.1 23 16-38 10-32 (180)
353 1z47_A CYSA, putative ABC-tran 96.9 0.00058 2E-08 50.3 3.0 23 19-41 43-65 (355)
354 1zcb_A G alpha I/13; GTP-bindi 96.9 0.00068 2.3E-08 50.1 3.3 23 15-37 31-53 (362)
355 1ukz_A Uridylate kinase; trans 96.9 0.0008 2.7E-08 45.2 3.4 24 15-38 13-36 (203)
356 3tui_C Methionine import ATP-b 96.9 0.0006 2.1E-08 50.4 3.0 22 19-40 56-77 (366)
357 1gvn_B Zeta; postsegregational 96.9 0.0007 2.4E-08 48.4 3.2 24 16-39 32-55 (287)
358 2pt5_A Shikimate kinase, SK; a 96.8 0.00075 2.6E-08 43.8 3.1 21 19-39 2-22 (168)
359 1via_A Shikimate kinase; struc 96.8 0.00059 2E-08 44.8 2.6 21 19-39 6-26 (175)
360 2yyz_A Sugar ABC transporter, 96.8 0.00063 2.2E-08 50.2 3.0 22 19-40 31-52 (359)
361 3nh6_A ATP-binding cassette SU 96.8 0.00039 1.3E-08 50.2 1.9 23 18-40 81-103 (306)
362 3rlf_A Maltose/maltodextrin im 96.8 0.00062 2.1E-08 50.6 3.0 23 19-41 31-53 (381)
363 2it1_A 362AA long hypothetical 96.8 0.00064 2.2E-08 50.2 3.0 22 19-40 31-52 (362)
364 2pt7_A CAG-ALFA; ATPase, prote 96.8 0.00067 2.3E-08 49.5 3.0 24 17-40 171-194 (330)
365 4e22_A Cytidylate kinase; P-lo 96.8 0.00093 3.2E-08 46.7 3.6 24 15-38 25-48 (252)
366 2ewv_A Twitching motility prot 96.8 0.00095 3.3E-08 49.5 3.7 25 15-39 134-158 (372)
367 1g29_1 MALK, maltose transport 96.8 0.0007 2.4E-08 50.2 3.0 23 19-41 31-53 (372)
368 2f1r_A Molybdopterin-guanine d 96.8 0.00032 1.1E-08 46.4 1.1 22 19-40 4-25 (171)
369 2gza_A Type IV secretion syste 96.8 0.00067 2.3E-08 50.1 2.9 25 16-40 174-198 (361)
370 2ze6_A Isopentenyl transferase 96.8 0.0007 2.4E-08 47.5 2.8 21 19-39 3-23 (253)
371 1p9r_A General secretion pathw 96.8 0.0011 3.9E-08 49.9 4.1 32 9-40 159-190 (418)
372 1v43_A Sugar-binding transport 96.8 0.00073 2.5E-08 50.1 3.0 22 19-40 39-60 (372)
373 2xb4_A Adenylate kinase; ATP-b 96.8 0.00088 3E-08 45.9 3.2 22 18-39 1-22 (223)
374 1rj9_A FTSY, signal recognitio 96.8 0.00074 2.5E-08 48.7 2.8 24 16-39 101-124 (304)
375 1ak2_A Adenylate kinase isoenz 96.8 0.0011 3.6E-08 45.8 3.5 25 15-39 14-38 (233)
376 3kta_A Chromosome segregation 96.8 0.00085 2.9E-08 44.2 2.9 21 19-39 28-48 (182)
377 1iy2_A ATP-dependent metallopr 96.8 0.0016 5.4E-08 46.1 4.5 22 19-40 75-96 (278)
378 3h4m_A Proteasome-activating n 96.7 0.0016 5.4E-08 46.0 4.4 26 15-40 49-74 (285)
379 1in4_A RUVB, holliday junction 96.7 0.00077 2.6E-08 49.1 2.8 23 18-40 52-74 (334)
380 2pbr_A DTMP kinase, thymidylat 96.7 0.00099 3.4E-08 44.1 3.2 21 19-39 2-22 (195)
381 1d2n_A N-ethylmaleimide-sensit 96.7 0.0014 4.9E-08 46.1 4.1 27 14-40 61-87 (272)
382 3b9q_A Chloroplast SRP recepto 96.7 0.00079 2.7E-08 48.5 2.8 22 18-39 101-122 (302)
383 2vp4_A Deoxynucleoside kinase; 96.7 0.00083 2.8E-08 46.3 2.7 26 15-40 18-43 (230)
384 1odf_A YGR205W, hypothetical 3 96.7 0.0011 3.8E-08 47.5 3.3 25 14-38 28-52 (290)
385 2oap_1 GSPE-2, type II secreti 96.7 0.00084 2.9E-08 51.8 2.9 25 16-40 259-283 (511)
386 1xjc_A MOBB protein homolog; s 96.7 0.0012 4.1E-08 43.6 3.2 23 17-39 4-26 (169)
387 1vht_A Dephospho-COA kinase; s 96.7 0.0011 3.9E-08 45.0 3.3 23 17-39 4-26 (218)
388 2vli_A Antibiotic resistance p 96.7 0.00075 2.6E-08 44.4 2.3 23 16-38 4-26 (183)
389 1lv7_A FTSH; alpha/beta domain 96.7 0.00093 3.2E-08 46.6 2.8 24 17-40 45-68 (257)
390 2pez_A Bifunctional 3'-phospho 96.7 0.0012 4E-08 43.5 3.2 24 16-39 4-27 (179)
391 3pfi_A Holliday junction ATP-d 96.7 0.0087 3E-07 43.3 8.1 26 15-40 53-78 (338)
392 3gd7_A Fusion complex of cysti 96.7 0.00095 3.2E-08 49.8 2.9 22 19-40 49-70 (390)
393 2z0h_A DTMP kinase, thymidylat 96.7 0.0012 4.1E-08 43.9 3.2 21 19-39 2-22 (197)
394 3d31_A Sulfate/molybdate ABC t 96.7 0.00058 2E-08 50.2 1.7 22 19-40 28-49 (348)
395 2w0m_A SSO2452; RECA, SSPF, un 96.7 0.001 3.5E-08 45.3 2.8 22 18-39 24-45 (235)
396 3r20_A Cytidylate kinase; stru 96.7 0.0013 4.3E-08 45.7 3.3 24 15-38 7-30 (233)
397 2p5t_B PEZT; postsegregational 96.7 0.00076 2.6E-08 47.2 2.2 25 15-39 30-54 (253)
398 2w58_A DNAI, primosome compone 96.7 0.0013 4.5E-08 44.1 3.3 23 18-40 55-77 (202)
399 1qf9_A UMP/CMP kinase, protein 96.6 0.0015 5E-08 43.2 3.4 22 18-39 7-28 (194)
400 2chg_A Replication factor C sm 96.6 0.0018 6.3E-08 43.4 3.9 21 19-39 40-60 (226)
401 1e6c_A Shikimate kinase; phosp 96.6 0.0012 4.1E-08 43.0 2.9 22 18-39 3-24 (173)
402 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.0013 4.6E-08 46.1 3.2 23 17-39 4-26 (260)
403 2iyv_A Shikimate kinase, SK; t 96.6 0.0013 4.5E-08 43.4 2.9 21 19-39 4-24 (184)
404 1zuh_A Shikimate kinase; alpha 96.6 0.0015 5.1E-08 42.5 3.1 22 18-39 8-29 (168)
405 1gtv_A TMK, thymidylate kinase 96.6 0.00048 1.6E-08 46.6 0.7 21 19-39 2-22 (214)
406 3t15_A Ribulose bisphosphate c 96.6 0.001 3.6E-08 47.5 2.5 25 15-39 34-58 (293)
407 1tue_A Replication protein E1; 96.6 0.0019 6.6E-08 44.0 3.6 23 17-39 58-80 (212)
408 1oxx_K GLCV, glucose, ABC tran 96.6 0.00058 2E-08 50.3 1.0 23 19-41 33-55 (353)
409 1f2t_A RAD50 ABC-ATPase; DNA d 96.6 0.0015 5.2E-08 42.0 2.9 19 20-38 26-44 (149)
410 2f6r_A COA synthase, bifunctio 96.5 0.0017 5.7E-08 46.3 3.4 24 15-38 73-96 (281)
411 1nij_A Hypothetical protein YJ 96.5 0.0011 3.6E-08 48.1 2.3 22 19-40 6-27 (318)
412 2npi_A Protein CLP1; CLP1-PCF1 96.5 0.0013 4.3E-08 50.2 2.8 25 16-40 137-161 (460)
413 2og2_A Putative signal recogni 96.5 0.0014 4.7E-08 48.4 2.8 23 17-39 157-179 (359)
414 4b4t_M 26S protease regulatory 96.5 0.0026 8.8E-08 48.1 4.3 32 9-40 207-238 (434)
415 3umf_A Adenylate kinase; rossm 96.5 0.0021 7E-08 44.1 3.4 21 19-39 31-51 (217)
416 3cf0_A Transitional endoplasmi 96.5 0.0028 9.5E-08 45.4 4.2 26 15-40 47-72 (301)
417 1cr0_A DNA primase/helicase; R 96.5 0.0015 5.1E-08 46.6 2.8 22 18-39 36-57 (296)
418 2qz4_A Paraplegin; AAA+, SPG7, 96.5 0.0021 7.2E-08 44.7 3.5 25 15-39 37-61 (262)
419 3co5_A Putative two-component 96.5 0.0014 5E-08 41.6 2.4 26 15-40 25-50 (143)
420 3b9p_A CG5977-PA, isoform A; A 96.5 0.0023 7.8E-08 45.5 3.6 25 16-40 53-77 (297)
421 2cvh_A DNA repair and recombin 96.5 0.0017 5.8E-08 43.9 2.8 23 17-39 20-42 (220)
422 3pxg_A Negative regulator of g 96.4 0.0028 9.6E-08 48.3 4.2 26 14-39 198-223 (468)
423 1njg_A DNA polymerase III subu 96.4 0.0017 5.9E-08 44.0 2.8 22 18-39 46-67 (250)
424 2yhs_A FTSY, cell division pro 96.4 0.0016 5.5E-08 50.0 2.8 23 17-39 293-315 (503)
425 1p5z_B DCK, deoxycytidine kina 96.4 0.0017 5.8E-08 45.6 2.8 27 13-39 20-46 (263)
426 3syl_A Protein CBBX; photosynt 96.4 0.0024 8.1E-08 45.6 3.5 25 15-39 65-89 (309)
427 1n0w_A DNA repair protein RAD5 96.4 0.0019 6.4E-08 44.4 2.8 24 16-39 23-46 (243)
428 2obl_A ESCN; ATPase, hydrolase 96.4 0.0019 6.6E-08 47.4 3.0 25 16-40 70-94 (347)
429 1yqt_A RNAse L inhibitor; ATP- 96.4 0.002 7E-08 50.0 3.2 23 18-40 48-70 (538)
430 3ozx_A RNAse L inhibitor; ATP 96.4 0.0018 6.3E-08 50.3 2.9 22 19-40 27-48 (538)
431 4b4t_L 26S protease subunit RP 96.4 0.0034 1.2E-07 47.5 4.3 33 8-40 206-238 (437)
432 1m7g_A Adenylylsulfate kinase; 96.4 0.0026 8.9E-08 43.1 3.3 25 15-39 23-47 (211)
433 4eaq_A DTMP kinase, thymidylat 96.3 0.0026 8.9E-08 43.9 3.2 24 16-39 25-48 (229)
434 4b4t_K 26S protease regulatory 96.3 0.0037 1.3E-07 47.2 4.3 27 14-40 203-229 (428)
435 1l8q_A Chromosomal replication 96.3 0.0021 7.1E-08 46.4 2.8 23 17-39 37-59 (324)
436 3nwj_A ATSK2; P loop, shikimat 96.3 0.002 6.9E-08 45.1 2.6 23 17-39 48-70 (250)
437 1ltq_A Polynucleotide kinase; 96.3 0.0025 8.4E-08 45.4 3.1 22 18-39 3-24 (301)
438 3b60_A Lipid A export ATP-bind 96.3 0.0023 7.9E-08 50.1 3.1 23 18-40 370-392 (582)
439 1a7j_A Phosphoribulokinase; tr 96.3 0.0014 4.8E-08 46.9 1.7 25 15-39 3-27 (290)
440 3euj_A Chromosome partition pr 96.3 0.0022 7.5E-08 49.1 2.8 22 18-39 30-51 (483)
441 1sxj_E Activator 1 40 kDa subu 96.2 0.0037 1.3E-07 45.5 3.8 21 19-39 38-58 (354)
442 3j16_B RLI1P; ribosome recycli 96.2 0.0024 8.3E-08 50.3 3.0 23 18-40 104-126 (608)
443 3te6_A Regulatory protein SIR3 96.2 0.0021 7.2E-08 46.7 2.4 28 13-40 41-68 (318)
444 2grj_A Dephospho-COA kinase; T 96.2 0.003 1E-07 42.5 3.0 25 15-39 10-34 (192)
445 2qgz_A Helicase loader, putati 96.2 0.0055 1.9E-07 44.2 4.6 23 17-39 152-174 (308)
446 4b4t_J 26S protease regulatory 96.2 0.0035 1.2E-07 46.9 3.6 33 8-40 173-205 (405)
447 3b5x_A Lipid A export ATP-bind 96.2 0.0027 9.2E-08 49.7 3.1 23 18-40 370-392 (582)
448 1sxj_D Activator 1 41 kDa subu 96.2 0.0049 1.7E-07 44.6 4.3 23 18-40 59-81 (353)
449 1q3t_A Cytidylate kinase; nucl 96.2 0.0037 1.3E-07 43.1 3.5 25 15-39 14-38 (236)
450 1svm_A Large T antigen; AAA+ f 96.2 0.0034 1.2E-07 46.6 3.4 25 15-39 167-191 (377)
451 1nlf_A Regulatory protein REPA 96.2 0.0027 9.2E-08 44.9 2.8 22 18-39 31-52 (279)
452 3qf7_A RAD50; ABC-ATPase, ATPa 96.2 0.0028 9.5E-08 46.8 2.9 19 20-38 26-44 (365)
453 2qby_A CDC6 homolog 1, cell di 96.2 0.0027 9.1E-08 46.4 2.8 26 15-40 43-68 (386)
454 1ofh_A ATP-dependent HSL prote 96.2 0.0028 9.7E-08 45.0 2.8 24 16-39 49-72 (310)
455 2dpy_A FLII, flagellum-specifi 96.2 0.0029 1E-07 47.9 3.0 25 16-40 156-180 (438)
456 4a82_A Cystic fibrosis transme 96.2 0.0023 7.9E-08 50.1 2.5 23 18-40 368-390 (578)
457 3bk7_A ABC transporter ATP-bin 96.1 0.0032 1.1E-07 49.6 3.1 23 18-40 118-140 (607)
458 3ea0_A ATPase, para family; al 96.1 0.057 2E-06 36.9 9.2 85 61-149 119-203 (245)
459 3crm_A TRNA delta(2)-isopenten 96.1 0.0038 1.3E-07 45.4 3.3 22 18-39 6-27 (323)
460 2yl4_A ATP-binding cassette SU 96.1 0.0025 8.5E-08 50.1 2.4 23 18-40 371-393 (595)
461 2qmh_A HPR kinase/phosphorylas 96.1 0.0036 1.2E-07 42.4 2.9 25 16-40 33-57 (205)
462 1fnn_A CDC6P, cell division co 96.1 0.0046 1.6E-07 45.3 3.7 22 19-40 46-67 (389)
463 3ozx_A RNAse L inhibitor; ATP 96.1 0.0032 1.1E-07 49.0 2.9 23 19-41 296-318 (538)
464 3qf4_B Uncharacterized ABC tra 96.1 0.0028 9.5E-08 49.8 2.6 23 18-40 382-404 (598)
465 1sxj_C Activator 1 40 kDa subu 96.1 0.0055 1.9E-07 44.5 3.9 22 19-40 48-69 (340)
466 3eie_A Vacuolar protein sortin 96.1 0.0045 1.5E-07 44.7 3.5 24 17-40 51-74 (322)
467 2bjv_A PSP operon transcriptio 96.1 0.0071 2.4E-07 42.3 4.4 26 15-40 27-52 (265)
468 3qf4_A ABC transporter, ATP-bi 96.0 0.0031 1.1E-07 49.4 2.7 23 18-40 370-392 (587)
469 1xwi_A SKD1 protein; VPS4B, AA 96.0 0.0046 1.6E-07 44.8 3.4 24 17-40 45-68 (322)
470 1yqt_A RNAse L inhibitor; ATP- 96.0 0.004 1.4E-07 48.4 3.2 24 18-41 313-336 (538)
471 3bk7_A ABC transporter ATP-bin 96.0 0.0036 1.2E-07 49.3 3.0 24 18-41 383-406 (607)
472 1azs_C GS-alpha; complex (lyas 96.0 0.0042 1.4E-07 46.5 3.2 24 15-38 38-61 (402)
473 3qks_A DNA double-strand break 96.0 0.0042 1.4E-07 42.0 2.9 19 20-38 26-44 (203)
474 2r62_A Cell division protease 96.0 0.0019 6.6E-08 45.2 1.3 23 17-39 44-66 (268)
475 2dr3_A UPF0273 protein PH0284; 96.0 0.004 1.4E-07 42.7 2.9 21 18-38 24-44 (247)
476 4fcw_A Chaperone protein CLPB; 96.0 0.0047 1.6E-07 44.0 3.3 23 18-40 48-70 (311)
477 4b4t_I 26S protease regulatory 96.0 0.0072 2.5E-07 45.6 4.3 32 9-40 208-239 (437)
478 2px0_A Flagellar biosynthesis 96.0 0.0055 1.9E-07 44.0 3.5 124 16-146 104-268 (296)
479 2ga8_A Hypothetical 39.9 kDa p 96.0 0.0083 2.8E-07 44.2 4.5 25 15-39 22-46 (359)
480 3ake_A Cytidylate kinase; CMP 96.0 0.0049 1.7E-07 41.2 3.1 21 19-39 4-24 (208)
481 2ce7_A Cell division protein F 95.9 0.0076 2.6E-07 46.1 4.3 24 17-40 49-72 (476)
482 3uk6_A RUVB-like 2; hexameric 95.9 0.008 2.7E-07 43.9 4.3 22 18-39 71-92 (368)
483 3d8b_A Fidgetin-like protein 1 95.9 0.0062 2.1E-07 44.7 3.7 26 15-40 115-140 (357)
484 1um8_A ATP-dependent CLP prote 95.9 0.0053 1.8E-07 45.2 3.3 24 16-39 71-94 (376)
485 1c9k_A COBU, adenosylcobinamid 95.9 0.0051 1.8E-07 40.9 2.9 21 20-40 2-22 (180)
486 2v1u_A Cell division control p 95.9 0.0039 1.3E-07 45.6 2.6 26 15-40 42-67 (387)
487 3d3q_A TRNA delta(2)-isopenten 95.9 0.0048 1.6E-07 45.2 3.0 22 18-39 8-29 (340)
488 3pxi_A Negative regulator of g 95.9 0.0072 2.5E-07 48.7 4.2 33 7-39 191-223 (758)
489 1r6b_X CLPA protein; AAA+, N-t 95.9 0.0082 2.8E-07 48.4 4.6 33 7-39 197-229 (758)
490 4b4t_H 26S protease regulatory 95.9 0.0064 2.2E-07 46.3 3.7 32 9-40 235-266 (467)
491 3j16_B RLI1P; ribosome recycli 95.9 0.0046 1.6E-07 48.8 3.0 22 20-41 381-402 (608)
492 3a8t_A Adenylate isopentenyltr 95.9 0.0065 2.2E-07 44.4 3.6 22 18-39 41-62 (339)
493 2qby_B CDC6 homolog 3, cell di 95.8 0.0075 2.6E-07 44.2 3.9 25 16-40 44-68 (384)
494 1pzn_A RAD51, DNA repair and r 95.8 0.0048 1.6E-07 45.3 2.8 25 16-40 130-154 (349)
495 3zvl_A Bifunctional polynucleo 95.8 0.0069 2.4E-07 45.5 3.7 24 16-39 257-280 (416)
496 2z4s_A Chromosomal replication 95.8 0.0047 1.6E-07 46.7 2.8 23 17-39 130-152 (440)
497 3gmt_A Adenylate kinase; ssgci 95.8 0.0063 2.1E-07 42.1 3.2 24 16-39 7-30 (230)
498 3end_A Light-independent proto 95.8 0.082 2.8E-06 37.7 9.2 85 60-148 156-241 (307)
499 3exa_A TRNA delta(2)-isopenten 95.8 0.0055 1.9E-07 44.4 2.9 23 18-40 4-26 (322)
500 1vma_A Cell division protein F 95.8 0.0052 1.8E-07 44.3 2.8 22 18-39 105-126 (306)
No 1
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=4.6e-31 Score=178.98 Aligned_cols=145 Identities=49% Similarity=0.861 Sum_probs=124.0
Q ss_pred CchhHHHHHhhhcccCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHH
Q 031796 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (153)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 80 (153)
||..++++++ .+..+.+||+++|++|||||||++++.++.+....+|.+.....+...+..+.+|||||++++...+..
T Consensus 1 m~~~~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 79 (187)
T 1zj6_A 1 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNT 79 (187)
T ss_dssp -CHHHHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHH
T ss_pred CchHHHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 7888888888 778899999999999999999999999888776677888777788888999999999999999999999
Q ss_pred hhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCCC
Q 031796 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 146 (153)
Q Consensus 81 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~~ 146 (153)
+++++|++++|+|+++++++.....|+..+.......+.|+++|+||+|+.++...+++.+.++..
T Consensus 80 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~ 145 (187)
T 1zj6_A 80 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLT 145 (187)
T ss_dssp HHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGG
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChh
Confidence 999999999999999999999999999988776445689999999999998877777777766654
No 2
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=6.1e-31 Score=177.39 Aligned_cols=149 Identities=59% Similarity=1.032 Sum_probs=127.7
Q ss_pred CchhHHHHHhhhcc-cCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHH
Q 031796 1 MGLSFTKLFSRLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 79 (153)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 79 (153)
||..+++.++..+. ++.+||+++|++|+|||||++++.++.+....+|.+.....+...+..+.+||+||++++...+.
T Consensus 1 mg~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 80 (183)
T 1moz_A 1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWR 80 (183)
T ss_dssp -CHHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGG
T ss_pred CchHHHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence 88889999998887 88999999999999999999999988876667888887788888889999999999999999999
Q ss_pred HhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCCCccc
Q 031796 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR 149 (153)
Q Consensus 80 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~~~~~ 149 (153)
.+++++|++++|+|+++++++.....++..++......+.|+++|+||+|+.++...+++.+.++...+.
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~ 150 (183)
T 1moz_A 81 CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELK 150 (183)
T ss_dssp GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCC
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCccccc
Confidence 9999999999999999999999999999988776555789999999999998887778888877765443
No 3
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.97 E-value=2.7e-31 Score=180.28 Aligned_cols=149 Identities=56% Similarity=0.991 Sum_probs=127.8
Q ss_pred CchhHHHHHh--hhcc-cCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCCCCchhc
Q 031796 1 MGLSFTKLFS--RLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (153)
Q Consensus 1 ~~~~~~~~~~--~~~~-~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 77 (153)
|+..++++++ +.+. ++.+||+++|++|+|||||++++.++.+....||.+.....+......+.+|||||++++...
T Consensus 3 m~~~~~~~~~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~ 82 (189)
T 2x77_A 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPY 82 (189)
T ss_dssp ---CCSCHHHHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCC
T ss_pred hHHHHHHHHHHhhhccCCCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHH
Confidence 5555666666 5666 788999999999999999999999888877788888888888888999999999999999999
Q ss_pred HHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCCCccc
Q 031796 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR 149 (153)
Q Consensus 78 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~~~~~ 149 (153)
+..+++++|++++|+|+++++++.....++..++......+.|+++|+||+|+.+....+++.+.++.....
T Consensus 83 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 154 (189)
T 2x77_A 83 WRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIM 154 (189)
T ss_dssp CSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCC
T ss_pred HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhcc
Confidence 999999999999999999999999999999988877666789999999999999887777888877755443
No 4
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=1.3e-30 Score=177.77 Aligned_cols=143 Identities=87% Similarity=1.318 Sum_probs=122.1
Q ss_pred HHHhhhcccCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCC
Q 031796 7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (153)
Q Consensus 7 ~~~~~~~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 86 (153)
.++++.+..+.+||+++|++|||||||++++.++.+....||.+.....+......+.+||+||++++...+..+++++|
T Consensus 19 ~~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 98 (192)
T 2b6h_A 19 SLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQ 98 (192)
T ss_dssp CGGGGTTTTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCC
T ss_pred HHHHHhccCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCC
Confidence 45667777889999999999999999999999988877778888888888888999999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCCCccc
Q 031796 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR 149 (153)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~~~~~ 149 (153)
++++|+|+++++++.....++..++......+.|+++|+||+|+.+....+++.+.++.....
T Consensus 99 ~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~ 161 (192)
T 2b6h_A 99 GLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLR 161 (192)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCS
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCccccc
Confidence 999999999999999999999988776555689999999999998887778888888765443
No 5
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=4.4e-30 Score=173.82 Aligned_cols=143 Identities=47% Similarity=0.846 Sum_probs=117.7
Q ss_pred hHHHHHhhhcc-cCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhh
Q 031796 4 SFTKLFSRLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF 82 (153)
Q Consensus 4 ~~~~~~~~~~~-~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 82 (153)
.++ .+.+... .+.+||+++|++|+|||||++++.++......||.+.....+......+.+|||||++++...+..++
T Consensus 5 ~~~-~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~ 83 (186)
T 1ksh_A 5 LLT-ILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYF 83 (186)
T ss_dssp -------------CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGC
T ss_pred hhH-HHHhhcccCCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHh
Confidence 444 4455555 67899999999999999999999988855667888888888888899999999999999999999999
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCCCc
Q 031796 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS 147 (153)
Q Consensus 83 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~~~ 147 (153)
+++|++++|+|+++++++.....|+..++......+.|+++|+||+|+.++...+++.+.+++..
T Consensus 84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 148 (186)
T 1ksh_A 84 ESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDS 148 (186)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGG
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhh
Confidence 99999999999999999999999999888765557899999999999998877777877776543
No 6
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=8.1e-30 Score=172.32 Aligned_cols=134 Identities=49% Similarity=0.843 Sum_probs=118.4
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEEC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (153)
.+.++|+++|++|||||||++++.+..+....||.+.....+...+..+.+|||||++.+...+..+++++|++++|+|+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~ 93 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDS 93 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEET
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEEC
Confidence 57899999999999999999999998776667788877778888899999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCCCcc
Q 031796 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 148 (153)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~~~~ 148 (153)
++++++.....|+..++......+.|+++|+||+|+.++...+++.+.+++...
T Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~ 147 (181)
T 1fzq_A 94 ADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTI 147 (181)
T ss_dssp TCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGC
T ss_pred cCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhc
Confidence 999999999999988877655578999999999999988777788887765443
No 7
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=1.3e-29 Score=167.97 Aligned_cols=132 Identities=96% Similarity=1.392 Sum_probs=117.5
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCc
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 97 (153)
+||+++|++|+|||||++++.++.+....||.+.....+......+.+||+||++++...+..+++++|++++|+|++++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 80 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999988887777888877778888889999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCCCccc
Q 031796 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR 149 (153)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~~~~~ 149 (153)
+++.....|+..++......+.|+++|+||+|+.++...+++.+.++.....
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 132 (164)
T 1r8s_A 81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR 132 (164)
T ss_dssp GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCS
T ss_pred HHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCccccc
Confidence 9999999999988776555789999999999998877778888887765443
No 8
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.97 E-value=5.3e-30 Score=177.95 Aligned_cols=135 Identities=18% Similarity=0.408 Sum_probs=106.3
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEEEE--EEE--cCeEEEEEEcCCCCCchhcHHHhhcCCCEE
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 88 (153)
+.+.+||+++|++|||||||+++|..+.|... .||++.++.. +.. ..+++.+|||+|+++|..++..+++.++++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 45679999999999999999999999988744 6777766543 222 347899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCccc
Q 031796 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSLR 149 (153)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~~ 149 (153)
++|||++++++|..+..|+..+.... .+++|++|||||+|+.+.. +++++++++++.+++
T Consensus 90 ilv~di~~~~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e 154 (216)
T 4dkx_A 90 VVVYDITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIE 154 (216)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred EEEeecchhHHHHHHHHHHHHHHHhc-CCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEE
Confidence 99999999999999999998875432 3679999999999997643 467789999988764
No 9
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=3.8e-29 Score=166.67 Aligned_cols=135 Identities=61% Similarity=1.059 Sum_probs=120.4
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEEC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (153)
.+.+||+++|++|+|||||++++.++.+....||.+.....+......+.+|||||++.+...+..+++++|++++|+|+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 84 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDS 84 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEET
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEEC
Confidence 56799999999999999999999998887778888888888888899999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCCCccc
Q 031796 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR 149 (153)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~~~~~ 149 (153)
++++++.....++..++......+.|+++|+||+|+.+....+++.+.++...+.
T Consensus 85 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 139 (171)
T 1upt_A 85 CDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALK 139 (171)
T ss_dssp TCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCT
T ss_pred CCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhcc
Confidence 9999999999999988876555689999999999999887777888777655443
No 10
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.96 E-value=1.6e-28 Score=167.14 Aligned_cols=134 Identities=41% Similarity=0.670 Sum_probs=115.8
Q ss_pred cccCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEE
Q 031796 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (153)
...+.+||+++|++|||||||++++.++.+....+|.+.....+...+..+.+|||||++.++..+..+++++|++++|+
T Consensus 19 ~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 98 (190)
T 1m2o_B 19 LWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLV 98 (190)
T ss_dssp -----CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEE
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEE
Confidence 34667899999999999999999999988877778888888888888899999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCCC
Q 031796 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 146 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~~ 146 (153)
|+++++++.....|+..++......+.|+++|+||+|+.++...+++.+.++..
T Consensus 99 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~ 152 (190)
T 1m2o_B 99 DAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLL 152 (190)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCS
T ss_pred ECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCc
Confidence 999999999999999988776555689999999999998877777787776643
No 11
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.96 E-value=1.3e-28 Score=168.65 Aligned_cols=133 Identities=31% Similarity=0.660 Sum_probs=108.8
Q ss_pred cccCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEE
Q 031796 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (153)
...+.+||+++|++|||||||++++.++++....||.+.....+...+..+.+|||||++.++..+..+++++|++++|+
T Consensus 21 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 100 (198)
T 1f6b_A 21 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLV 100 (198)
T ss_dssp CTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEE
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEE
Confidence 45678999999999999999999999988776677777777788888899999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCC
Q 031796 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL 145 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~ 145 (153)
|++++++|.....|+..++......+.|+++|+||+|+.++...+++.+.++.
T Consensus 101 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~ 153 (198)
T 1f6b_A 101 DCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGL 153 (198)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTC
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCc
Confidence 99999999999999998877655568999999999999887677777776654
No 12
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.96 E-value=1.3e-28 Score=166.08 Aligned_cols=135 Identities=49% Similarity=0.837 Sum_probs=117.0
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEE
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (153)
..+.+||+++|++|+|||||++++.+..+....+|.+.....+...+..+.+||+||++++...+..+++++|++++|+|
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 97 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVD 97 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEE
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 35679999999999999999999999988666777777777888888999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCCCcc
Q 031796 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 148 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~~~~ 148 (153)
+++.+++.....++..++......+.|+++|+||+|+.+....+++.+.+++..+
T Consensus 98 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~ 152 (181)
T 2h17_A 98 STDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSI 152 (181)
T ss_dssp TTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGC
T ss_pred CCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccc
Confidence 9999999999999998877654568999999999999887777778777765444
No 13
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.96 E-value=2.3e-28 Score=165.91 Aligned_cols=135 Identities=33% Similarity=0.744 Sum_probs=118.6
Q ss_pred cccCccEEEEEcCCCCCHHHHHHhHhcCCcc-cccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEE
Q 031796 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 91 (153)
..++.+||+++|++|+|||||++++.+..+. ...+|.+..+..+......+.+||+||++++...+..+++++|++++|
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 97 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM 97 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEE
Confidence 3466799999999999999999999988876 457788888888888899999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCCCc
Q 031796 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS 147 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~~~ 147 (153)
+|+++++++.....|+..++......+.|+++|+||+|+......+++.+.++...
T Consensus 98 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~ 153 (188)
T 1zd9_A 98 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSA 153 (188)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGG
T ss_pred EECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhh
Confidence 99999999999999999887765556899999999999988777777887776543
No 14
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.96 E-value=1.7e-28 Score=167.36 Aligned_cols=136 Identities=40% Similarity=0.697 Sum_probs=115.3
Q ss_pred cccCccEEEEEcCCCCCHHHHHHhHhcCCcccc--cCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEE
Q 031796 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 90 (153)
......||+++|.+|||||||++++.+..+... .+|.+.....++.....+.+|||||++++...+..+++++|++++
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 92 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIF 92 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEE
Confidence 346779999999999999999999999987753 788888888888899999999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCC-------CCceEEEEEeCCCccCCCCHhHHHHHhCCCcc
Q 031796 91 VVDSNDRDRVVEARDELHRMLNEDEL-------RDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 148 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~-------~~~pii~v~~K~Dl~~~~~~~~~~~~~~~~~~ 148 (153)
|||+++.++|.....|+..++..... .+.|+++|+||+|+......+++.+.+++..+
T Consensus 93 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~ 157 (199)
T 4bas_A 93 VVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTL 157 (199)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHH
T ss_pred EEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhh
Confidence 99999999999999999988765322 37899999999999988888888887775443
No 15
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.96 E-value=1.1e-27 Score=162.60 Aligned_cols=134 Identities=43% Similarity=0.768 Sum_probs=113.7
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCC-cc-cccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEE
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGE-IV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~-~~-~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 91 (153)
..+.+||+++|++|+|||||++++.+.. +. ...+|.+.....+...+..+.+|||||++++...+..+++++|++++|
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 97 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFV 97 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 4667999999999999999999999887 33 456788888788888889999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCC--CCceEEEEEeCCCccCCCCHhHHHHHhCCCc
Q 031796 92 VDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLGLHS 147 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~--~~~pii~v~~K~Dl~~~~~~~~~~~~~~~~~ 147 (153)
+|+++.+++.....++..++..... .+.|+++|+||+|+.++...+++.+.+++..
T Consensus 98 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 155 (190)
T 2h57_A 98 IDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLEN 155 (190)
T ss_dssp EETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGG
T ss_pred EECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhh
Confidence 9999999999999999888776544 5799999999999988777777776665433
No 16
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.96 E-value=8.2e-28 Score=176.41 Aligned_cols=136 Identities=96% Similarity=1.377 Sum_probs=119.4
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEE
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (153)
..+.+||+++|.+|+|||||++++.+..+....||.+.....++.....+.+|||||++.+...+..+++.+|++++|||
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D 241 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 241 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEE
T ss_pred ccCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 35678999999999999999999999988877789999999999999999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCCCccc
Q 031796 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR 149 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~~~~~ 149 (153)
++++++|.....++..++......++|+++|+||+|+.+....+++.+.++.....
T Consensus 242 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~ 297 (329)
T 3o47_A 242 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR 297 (329)
T ss_dssp TTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCC
T ss_pred CCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhh
Confidence 99999999999999999887766789999999999999988888999998877643
No 17
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.95 E-value=1.9e-26 Score=177.28 Aligned_cols=137 Identities=74% Similarity=1.222 Sum_probs=124.3
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEE
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (153)
..+.+||+++|.+++|||||++++.+..+....+|.+.....++..++.+.+|||||++.+...+..+++++|++++|||
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D 398 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD 398 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEE
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEE
Confidence 35679999999999999999999999988888899999999999999999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHHhCCCcccc
Q 031796 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ 150 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~~~~~~~ 150 (153)
++++++|.....++..++......++|+++|+||+|+.+....+++.+.++......
T Consensus 399 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 455 (497)
T 3lvq_E 399 CADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRD 455 (497)
T ss_dssp TTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCS
T ss_pred CcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhc
Confidence 999999999999999998876667899999999999998888888888888765443
No 18
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.94 E-value=6.3e-26 Score=150.44 Aligned_cols=132 Identities=17% Similarity=0.198 Sum_probs=84.5
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEE-EEE--EcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEE
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (153)
.+||+++|++|+|||||++++.+.......++.+.... .+. .....+.+||+||++.+...+..+++.+|++++|||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS 81 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEE
Confidence 58999999999999999999988766544443333322 222 344689999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+++++++.....|+..+.......+.|+++|+||+|+.+.. ..+++++..+.+.+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 141 (166)
T 3q72_A 82 VTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFI 141 (166)
T ss_dssp TTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEE
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEE
Confidence 99999999999999988776556789999999999997543 23456666666554
No 19
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.94 E-value=4.5e-26 Score=156.09 Aligned_cols=135 Identities=16% Similarity=0.252 Sum_probs=104.9
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEE---EEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV---ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~---~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
..+.+||+++|.+|+|||||++++.+..+... .+|.+..+ .......+.+.+|||||++++...+..+++.+|+++
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 100 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV 100 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence 35679999999999999999999999887643 45555433 223345688999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|||+++++++..+..|+..+.......++|+++|+||+|+.... ...++++..+..++
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 164 (201)
T 3oes_A 101 LVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFM 164 (201)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEE
Confidence 999999999999999999888776555689999999999997543 24567777777655
No 20
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.94 E-value=6.1e-26 Score=152.65 Aligned_cols=135 Identities=18% Similarity=0.264 Sum_probs=106.2
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEE-EEEEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCEEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~-~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 90 (153)
.+.+||+++|++|+|||||++++.++.+... .+|.+... ..+...+ +.+.+||+||++++...+..+++.+|++++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 83 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 83 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEE
Confidence 4579999999999999999999998776643 45555443 3334444 688999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCccc
Q 031796 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSLR 149 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~~ 149 (153)
|||+++++++..+..|+..+.......+.|+++|+||+|+.... +.+++++.++.++++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 147 (181)
T 3t5g_A 84 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLE 147 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEE
Confidence 99999999999999988887666555689999999999996432 355677777776553
No 21
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.94 E-value=1.1e-25 Score=151.68 Aligned_cols=136 Identities=19% Similarity=0.302 Sum_probs=108.2
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEE-EEEEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~-~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
..+.+||+++|++|+|||||++++.+..+... .++....+ ......+ +.+.+||+||++.+...+..+++++|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 94 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 94 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 45679999999999999999999998876633 45554443 2233333 56778999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCccc
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSLR 149 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~~ 149 (153)
+|||+++++++..+..|+..+.......+.|+++|+||+|+.+.. +.+++++.++.+++.
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 159 (183)
T 3kkq_A 95 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIE 159 (183)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEE
Confidence 999999999999999888887654444689999999999997532 356677788876653
No 22
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.94 E-value=5.7e-26 Score=153.90 Aligned_cols=135 Identities=22% Similarity=0.468 Sum_probs=108.4
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEE---EEEEc-----------CeEEEEEEcCCCCCchhcH
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE---TVEYK-----------NISFTVWDVGGQDKIRPLW 78 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~---~~~~~-----------~~~~~i~D~~g~~~~~~~~ 78 (153)
....+||+++|++|+|||||++++.+..+.. ..+|.+.++. .+... ...+.+||+||++.+...+
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 4567999999999999999999999887653 3566665554 33333 4689999999999999999
Q ss_pred HHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 79 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
..+++++|++++|+|++++.++..+..|+..+.......+.|+++|+||+|+.... ..+++++..+...+
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYF 162 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEE
T ss_pred HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEE
Confidence 99999999999999999999999988888877655444679999999999997632 24556667776554
No 23
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.94 E-value=1.3e-25 Score=149.95 Aligned_cols=134 Identities=14% Similarity=0.141 Sum_probs=94.2
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeE--EEEEEEcC--eEEEEEEcCCCCC--chhcHHHhhcCCCEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKN--ISFTVWDVGGQDK--IRPLWRHYFQNTQGL 88 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~D~~g~~~--~~~~~~~~~~~~~~~ 88 (153)
.+.+||+++|++|+|||||++++.+..+....++.+.+ ...+...+ +.+.+||+||++. +......+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 45789999999999999999999998876444444433 33344443 5889999999987 566677888999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCC-----HhHHHHHhCCCcc
Q 031796 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-----AAEITDKLGLHSL 148 (153)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~-----~~~~~~~~~~~~~ 148 (153)
++|||++++.++..+..|+..+.......+.|+++|+||+|+.+... ...+++..+..++
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 146 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFI 146 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEE
Confidence 99999999999999988888776554445799999999999976432 3345566665544
No 24
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.94 E-value=1.3e-25 Score=152.08 Aligned_cols=131 Identities=15% Similarity=0.265 Sum_probs=102.5
Q ss_pred cccCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEEEEEEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
.+.+.+||+++|++|||||||++++.++.+... .+|.+.....+...+ +.+.+|||+|++.+. +++.+|+++
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i 90 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV 90 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEE
Confidence 456789999999999999999999999887643 455443334455554 678889999999877 778899999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccC----CC---CHhHHHHHhC-CCcc
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN----AM---NAAEITDKLG-LHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~----~~---~~~~~~~~~~-~~~~ 148 (153)
+|||++++.+|..+..|+..+.......+.|+++|+||+|+.. .. +..++++.++ ..++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~ 157 (184)
T 3ihw_A 91 FVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYY 157 (184)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEE
Confidence 9999999999999998888886654446799999999999942 11 3456777776 4443
No 25
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.94 E-value=2.3e-25 Score=150.44 Aligned_cols=134 Identities=20% Similarity=0.375 Sum_probs=104.1
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeE-EEEEEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCEEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN-VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~-~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 90 (153)
++.+||+++|++|+|||||++++.+..+... .+|.... ...+...+ ..+.+||+||++++...+..+++.+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 4679999999999999999999998886643 3333322 23333333 568889999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC----CHhHHHHHhCCCcc
Q 031796 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSL 148 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~----~~~~~~~~~~~~~~ 148 (153)
|||+++..++..+..|+..+.......+.|+++|+||+|+.... ..+++++.++.+.+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 143 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFI 143 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEE
Confidence 99999999999999988887765555689999999999997543 35566777776655
No 26
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.94 E-value=2.2e-25 Score=151.16 Aligned_cols=135 Identities=24% Similarity=0.435 Sum_probs=107.0
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeE--EEEEEEcC--eEEEEEEcCCCCCch-hcHHHhhcCCCE
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIR-PLWRHYFQNTQG 87 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~D~~g~~~~~-~~~~~~~~~~~~ 87 (153)
..+.+||+++|++|+|||||++++.+..+.. ..++.+.+ ...+...+ ..+.+||+||++++. ..+..+++++|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 4567999999999999999999999887763 34555433 33444444 789999999999998 888999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+++|+|++++.++..+..|+..+.......+.|+++|+||+|+.+.. ..+++++..+..++
T Consensus 97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 162 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLF 162 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEE
Confidence 99999999999999998888877665445689999999999997542 24556666776554
No 27
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.94 E-value=1.2e-25 Score=149.36 Aligned_cols=134 Identities=23% Similarity=0.423 Sum_probs=105.0
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEE--EEEEEc--CeEEEEEEcCCCCCchhcHHHhhcCCCEE
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 88 (153)
..+.+||+++|++|+|||||++++.++.+... .++.+... ..+... ...+.+||+||++++...+..+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 35679999999999999999999998876643 45554443 333333 57899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
++|+|++++.++.....|+..+.... .+++|+++|+||+|+.++. +..++++..+..++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 146 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFM 146 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEE
Confidence 99999999999999888887765432 3579999999999997532 24445556665544
No 28
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.93 E-value=2.6e-25 Score=149.11 Aligned_cols=136 Identities=18% Similarity=0.310 Sum_probs=107.5
Q ss_pred cccCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEEE-EEEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCEE
Q 031796 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE-TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (153)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~~-~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 88 (153)
...+.+||+++|++|+|||||++++.+..+... .+|++..+. .+...+ ..+.+||+||++++...+..+++++|++
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 346679999999999999999999999876643 455554443 334443 6899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
++|||+++..++..+..|+..++......+.|+++|+||+|+.... ....+++..+...+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 149 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYF 149 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEE
Confidence 9999999999999999888887655444679999999999997642 24445555565444
No 29
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.93 E-value=8.5e-26 Score=149.62 Aligned_cols=134 Identities=20% Similarity=0.359 Sum_probs=102.7
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEEE-EEEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCEEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE-TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~~-~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 90 (153)
.+.+||+++|++|+|||||++++.+..+... .+|...... .+...+ +.+.+||+||++++...+..+++.+|++++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 4568999999999999999999998876533 444444332 233333 689999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
|+|+++++++.....|+..+.......+.|+++|+||+|+.+.. +..++++..+.+.+
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 144 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYV 144 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEE
Confidence 99999999999998888887665444579999999999997642 24445566665544
No 30
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.93 E-value=3.3e-25 Score=146.89 Aligned_cols=132 Identities=19% Similarity=0.346 Sum_probs=102.9
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEEE-EEE--cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEE
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~~-~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 91 (153)
+.+||+++|++|+|||||++++.++.+.. ..+|.+..... +.. ....+.+||+||++++...+..+++++|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999887763 34555544332 222 346899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHh-CCCc
Q 031796 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKL-GLHS 147 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~-~~~~ 147 (153)
+|++++.++.....|+..+.......+.|+++|+||+|+.++. ...++++.+ +...
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 143 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAF 143 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEE
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcE
Confidence 9999999999988888777654334679999999999997643 234455555 4433
No 31
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.93 E-value=1.8e-25 Score=148.45 Aligned_cols=132 Identities=22% Similarity=0.480 Sum_probs=104.4
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEE--EEEEEc--CeEEEEEEcCCCCCchhcHHHhhcCCCEEEE
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 90 (153)
+.+||+++|++|+|||||++++.+..+.. ..++.+.+. ..+... ...+.+||+||++++...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 35899999999999999999999888653 355555443 334443 3689999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC---C-----CHhHHHHHhCCCcc
Q 031796 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA---M-----NAAEITDKLGLHSL 148 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~---~-----~~~~~~~~~~~~~~ 148 (153)
|+|++++.++.....|+..+.... ..+.|+++|+||+|+... . ..+++++..+...+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~ 146 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFF 146 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEE
T ss_pred EEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEE
Confidence 999999999999988887765432 357999999999999754 1 24455666666544
No 32
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.93 E-value=4.9e-25 Score=145.78 Aligned_cols=133 Identities=17% Similarity=0.351 Sum_probs=105.4
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeE-EEEEEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCEEEEE
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN-VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~-~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 91 (153)
+.+||+++|++|+|||||++++.++.+... .++.... ...+...+ ..+.+||+||++++...+..+++++|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 468999999999999999999998876633 3443322 23334443 5699999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|++++.++..+..|+..+.......+.|+++|+||+|+.+.. ...++++..+.+.+
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 143 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFM 143 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEE
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEE
Confidence 9999999999999888887765444689999999999987543 24556667776654
No 33
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.93 E-value=5.9e-26 Score=157.20 Aligned_cols=133 Identities=20% Similarity=0.314 Sum_probs=103.7
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEEE---EEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
....+||+++|++|||||||++++.++.+... .+|.+..+. .+....+.+.+|||+|++++...+..+++++|+++
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 103 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 103 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE
Confidence 35679999999999999999999999887644 566665543 22334578999999999999999999999999999
Q ss_pred EEEECCCcccHHH-HHHHHHHHHcCCCCCCceEEEEEeCCCccCC--------------C---CHhHHHHHhCC-Ccc
Q 031796 90 FVVDSNDRDRVVE-ARDELHRMLNEDELRDAVLLVFANKQDLPNA--------------M---NAAEITDKLGL-HSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~--------------~---~~~~~~~~~~~-~~~ 148 (153)
+|||+++++++.. +..|+..+... .++.|+++|+||+|+.++ . +..++++.++. .++
T Consensus 104 ~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 179 (214)
T 3q3j_B 104 LCFDISRPETVDSALKKWRTEILDY--CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYL 179 (214)
T ss_dssp EEEETTCTHHHHHHHTHHHHHHHHH--CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEE
Confidence 9999999999998 56665555433 257999999999999752 2 35667788887 444
No 34
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.93 E-value=1.2e-25 Score=150.60 Aligned_cols=135 Identities=21% Similarity=0.353 Sum_probs=104.6
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCcee--eEEEEEEEcC---eEEEEEEcCCCCCchhcHHHhhcCCCE
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN---ISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~--~~~~~~~~~~---~~~~i~D~~g~~~~~~~~~~~~~~~~~ 87 (153)
..+.+||+++|++|+|||||++++.+..+.. ..+|.+ .....+...+ ..+.+||+||++.+...+..+++++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 3567999999999999999999999887653 345554 4445555554 799999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCC--CCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 88 LIFVVDSNDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+++|+|+++++++..+..|+..+..... ...+|+++|+||+|+.+.. ...++++..+.+.+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 150 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSH 150 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEE
Confidence 9999999999999888877766543210 1234589999999997632 34556677776554
No 35
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.93 E-value=3.7e-25 Score=150.46 Aligned_cols=134 Identities=26% Similarity=0.497 Sum_probs=107.3
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeE--EEEEEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
...+||+++|++|+|||||++++.+..+.. ..++.+.+ ...+...+ +.+.+||+||++.+...+..+++.+|+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 456899999999999999999999987663 34554433 34455555 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCccc
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSLR 149 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~~ 149 (153)
+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ..+++++.++.+++.
T Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 157 (196)
T 3tkl_A 94 VVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLE 157 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEE
Confidence 999999999999988887766443 23579999999999997653 355677777776553
No 36
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.93 E-value=1.3e-25 Score=153.97 Aligned_cols=130 Identities=22% Similarity=0.462 Sum_probs=100.7
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeE--EEEEEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
.+.+||+++|++|+|||||++++.+..+.. ..+|.+.+ ...+...+ +.+.+||+||++++...+..+++++|+++
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 556999999999999999999999888753 34565543 34455544 69999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCC
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGL 145 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~ 145 (153)
+|||+++++++..+..|+..+.... ..++|+++|+||+|+.+.. +..++++..+.
T Consensus 107 lv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~ 166 (201)
T 2hup_A 107 LAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDI 166 (201)
T ss_dssp EEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHHHcCC
Confidence 9999999999999888877765432 3579999999999997632 34566777776
No 37
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=5.1e-25 Score=149.54 Aligned_cols=134 Identities=25% Similarity=0.439 Sum_probs=106.4
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEE--EEEEEc--CeEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
.+.+||+++|++|+|||||++++.+..+.. ..++.+.+. ..+... ...+.+|||||++.+...+..+++++|+++
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 456899999999999999999999987663 355555443 333433 478999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC----CHhHHHHHhCCCcc
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~----~~~~~~~~~~~~~~ 148 (153)
+|+|++++.++..+..|+..+.......+.|+++|+||+|+.... ...++++..+..++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 155 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFI 155 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEE
Confidence 999999999999998888887665445689999999999996432 24455666665544
No 38
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=2.2e-25 Score=149.62 Aligned_cols=134 Identities=21% Similarity=0.482 Sum_probs=99.0
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCcc--cccCceeeEEEE--EEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCE
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVET--VEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~--~~~~t~~~~~~~--~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~ 87 (153)
....+||+++|++|+|||||++++.+..+. ...++.+.++.. +...+ +.+.+||+||++.+...+..+++++|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 356799999999999999999999998874 345666655543 33443 689999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.... ...++++..+...+
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 151 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFM 151 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEE
Confidence 999999999999988888877765432 2579999999999997643 24556667776554
No 39
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.93 E-value=1.7e-25 Score=154.74 Aligned_cols=134 Identities=25% Similarity=0.534 Sum_probs=106.3
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEE--EEEEc------------CeEEEEEEcCCCCCchhcHH
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK------------NISFTVWDVGGQDKIRPLWR 79 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~--~~~~~------------~~~~~i~D~~g~~~~~~~~~ 79 (153)
.+.+||+++|++|+|||||++++.+..+.. ..+|.+.++. .+... ...+.+|||||++++...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 556999999999999999999999887753 3455554443 23222 57899999999999999999
Q ss_pred HhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 80 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
.+++++|++++|||+++..++..+..|+..+.......+.|+++|+||+|+.... ..+++++..++.++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 176 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYF 176 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEE
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEE
Confidence 9999999999999999999999988887766554434689999999999997642 24556667776654
No 40
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.93 E-value=6.8e-25 Score=147.09 Aligned_cols=132 Identities=25% Similarity=0.536 Sum_probs=105.4
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcc-cccCceeeE--EEEEEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
...+||+++|++|+|||||++++.+..+. ...++.+.. ...+...+ ..+.+||+||++.+...+..+++++|+++
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 86 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI 86 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence 56699999999999999999999988766 334555443 34555555 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|+|++++.++..+..|+..+.... .+.|+++|+||+|+.... ....+++..+.+.+
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 148 (181)
T 3tw8_B 87 VVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLF 148 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEE
Confidence 9999999999999988887775532 579999999999987643 24556666676654
No 41
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.93 E-value=1.8e-25 Score=152.18 Aligned_cols=132 Identities=24% Similarity=0.424 Sum_probs=103.0
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEEEE-EEE--cCeEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~~~-~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
..+.+||+++|++|+|||||++++.+..+... .+|.+..+.. +.. ..+.+.+|||||++++...+..+++++|+++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 99 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL 99 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence 35669999999999999999999999887633 5565555433 233 3367899999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC----C---CHhHHHHHhCCC
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----M---NAAEITDKLGLH 146 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~----~---~~~~~~~~~~~~ 146 (153)
+|||++++.++..+...|...+... ..+.|+++|+||+|+.+. . +..++++.++..
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (194)
T 3reg_A 100 LCFAVNNRTSFDNISTKWEPEIKHY-IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCV 162 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH-CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCC
Confidence 9999999999999755555444432 257999999999999743 1 355677777776
No 42
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=5.1e-25 Score=149.84 Aligned_cols=137 Identities=22% Similarity=0.392 Sum_probs=105.5
Q ss_pred hhcccCccEEEEEcCCCCCHHHHHHhHhcCCcc-cccCceeeEEEEE--EE--cCeEEEEEEcCCCCCchhcHHHhhcCC
Q 031796 11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETV--EY--KNISFTVWDVGGQDKIRPLWRHYFQNT 85 (153)
Q Consensus 11 ~~~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~-~~~~t~~~~~~~~--~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (153)
.....+.+||+++|++|+|||||++++.+..+. ...++.+.+.... .. ....+.+||+||++++...+..+++++
T Consensus 17 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 96 (192)
T 2fg5_A 17 RGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGS 96 (192)
T ss_dssp ----CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTC
T ss_pred ccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccC
Confidence 334467799999999999999999999998865 3456665554332 22 447899999999999999999999999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 86 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
|++++|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+.. +..++++..+...+
T Consensus 97 d~iilV~d~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 163 (192)
T 2fg5_A 97 AAAVIVYDITKQDSFYTLKKWVKELKEH-GPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVV 163 (192)
T ss_dssp SEEEEEEETTCTHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEE
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEE
Confidence 9999999999999999998887776443 23579999999999997532 24556666665544
No 43
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.93 E-value=6.1e-26 Score=150.54 Aligned_cols=132 Identities=20% Similarity=0.412 Sum_probs=104.2
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEE--EEEEEc--CeEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
.+.+||+++|++|+|||||++++.+..+.. ..+|.+.+. ..+... ...+.+||+||++++...+..+++++|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 457999999999999999999999887653 355554433 334433 468999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|+|++++.++.....|+..+.... .+.|+++|+||+|+.+.. +.+++++..+...+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 144 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFY 144 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEE
Confidence 9999999999988888877765433 578999999999997532 24556666776554
No 44
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.93 E-value=1.2e-25 Score=151.39 Aligned_cols=133 Identities=21% Similarity=0.476 Sum_probs=82.0
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEE--EEEEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
...+||+++|++|+|||||++++.+..+.. ..+|.+.++ ..+...+ ..+.+||+||++++...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 456999999999999999999999887653 355655444 3444544 78999999999999998899999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+.. +.+++++..+...+
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 148 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFM 148 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEE
Confidence 999999999999988887776543 23579999999999997642 24566777776654
No 45
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.93 E-value=4.6e-25 Score=147.67 Aligned_cols=136 Identities=23% Similarity=0.394 Sum_probs=105.2
Q ss_pred hcccCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEE--EEEEEc--CeEEEEEEcCCCCCchhcHHHhhcCCC
Q 031796 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (153)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~ 86 (153)
....+.+||+++|++|+|||||++++.+..+... .++.+.+. ..+... ...+.+||+||++++...+..+++++|
T Consensus 10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (179)
T 1z0f_A 10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (179)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence 3345679999999999999999999998886543 44544333 333443 468999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
++++|+|+++..++..+..|+..+... ...+.|+++|+||+|+.++. +..++++..+...+
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 155 (179)
T 1z0f_A 90 GALMVYDITRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFL 155 (179)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEEEeCcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEE
Confidence 999999999999998888887766443 22579999999999997532 24556666666544
No 46
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.93 E-value=8.2e-25 Score=149.78 Aligned_cols=133 Identities=21% Similarity=0.466 Sum_probs=105.8
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEE--EEEEc--CeEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
...+||+++|++|+|||||++++.+..+.. ..++.+.++. .+... ...+.+||+||++.+...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 456899999999999999999999988753 3555554443 33333 468999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ...++++.+++..+
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 148 (203)
T 1zbd_A 86 LMYDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFF 148 (203)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEE
Confidence 999999999999888887776442 23578999999999997643 24567777776554
No 47
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.93 E-value=4e-25 Score=152.55 Aligned_cols=125 Identities=27% Similarity=0.361 Sum_probs=99.1
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEc---CeEEEEEEcCCCCCchh-cHHHhhcCCCEEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK---NISFTVWDVGGQDKIRP-LWRHYFQNTQGLIF 90 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~i~ 90 (153)
.+.+||+++|++|+|||||++++.+..+....+++......+... ...+.+|||||++.+.. .+..+++.+|++++
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~ 84 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVF 84 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEE
Confidence 567999999999999999999999988876666666666666665 68999999999999987 78888999999999
Q ss_pred EEECCCcc-cHHHHHHHHHHHHcC--CCCCCceEEEEEeCCCccCCCCHhHH
Q 031796 91 VVDSNDRD-RVVEARDELHRMLNE--DELRDAVLLVFANKQDLPNAMNAAEI 139 (153)
Q Consensus 91 v~d~~~~~-s~~~~~~~~~~~~~~--~~~~~~pii~v~~K~Dl~~~~~~~~~ 139 (153)
|||+++.. ++.....+|...+.. ....+.|+++|+||+|+......+++
T Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 136 (214)
T 2fh5_B 85 VVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLI 136 (214)
T ss_dssp EEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHH
T ss_pred EEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHH
Confidence 99999854 466677777766433 12357899999999999877654433
No 48
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.93 E-value=7.6e-25 Score=147.09 Aligned_cols=135 Identities=21% Similarity=0.399 Sum_probs=105.1
Q ss_pred cccCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEE--EEEEEc--CeEEEEEEcCCCCCchhcHHHhhcCCCE
Q 031796 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (153)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 87 (153)
.....+||+++|++|+|||||++++.+..+... .++.+... ..+... ...+.+||+||++++...+..+++++|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 346679999999999999999999998877643 34544333 333333 4689999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+++|+|++++.++.....|+..+.... .++.|+++|+||+|+.+.. +.+++++..+...+
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 152 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFM 152 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEE
Confidence 999999999999999888887775532 3579999999999996542 24456666666544
No 49
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.93 E-value=4.3e-25 Score=146.78 Aligned_cols=132 Identities=17% Similarity=0.247 Sum_probs=94.1
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCCcccc---cCceeeEEEEEEEcC--eEEEEEEcCCCCCchh-cHHHhhcCCCEEEE
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYKN--ISFTVWDVGGQDKIRP-LWRHYFQNTQGLIF 90 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~~~~~---~~t~~~~~~~~~~~~--~~~~i~D~~g~~~~~~-~~~~~~~~~~~~i~ 90 (153)
.+||+++|++|||||||++++.+...... .++.......+...+ +.+.+||+||++.+.. .+..+++++|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 47999999999999999999987654421 223333333444443 6889999999998876 66777899999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
|||+++++++..+..|+..+.......+.|+++|+||+|+.+.. ..+++++..+.+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 144 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHI 144 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEE
Confidence 99999999999999999988776555689999999999997432 24556777776555
No 50
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.93 E-value=1e-24 Score=144.85 Aligned_cols=133 Identities=22% Similarity=0.425 Sum_probs=104.3
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEE--EEEEEc--CeEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
.+.+||+++|++|+|||||++++.+..+.. ..++.+... ..+... ...+.+||+||++++...+..+++++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 456999999999999999999999988653 355555443 333433 378999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|+|++++.++.....|+..+.. ...+..|+++|+||+|+.+.. ...++++..+.+.+
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 146 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQ-HGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFV 146 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHH-HSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHH-hCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEE
Confidence 99999999999988877776644 234689999999999997643 24455566665544
No 51
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.93 E-value=8.3e-25 Score=148.30 Aligned_cols=133 Identities=21% Similarity=0.481 Sum_probs=105.6
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEE--EEEEc--CeEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
...+||+++|++|+|||||++++.+..+.. ..++.+.++. .+... ...+.+||+||++.+...+..+++++|+++
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 99 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL 99 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence 456899999999999999999999988753 3455554443 33333 468999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|||++++.++..+..|+..+... ...+.|+++|+||+|+.... ..+++++.+++..+
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (189)
T 2gf9_A 100 LMYDIANQESFAAVQDWATQIKTY-SWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFF 162 (189)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEE
Confidence 999999999998888877766443 23579999999999997642 34567777776554
No 52
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=1.8e-25 Score=152.43 Aligned_cols=139 Identities=17% Similarity=0.277 Sum_probs=104.3
Q ss_pred HhhhcccCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEEE-EEEEc--CeEEEEEEcCCCCCchhcHHHhhcC
Q 031796 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQN 84 (153)
Q Consensus 9 ~~~~~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~~-~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~ 84 (153)
++.-...+.+||+++|++|+|||||++++.+..+... .+|.+..+. .+... ...+.+||+||++. ...+..+++.
T Consensus 20 ~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~ 98 (196)
T 2atv_A 20 FQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRW 98 (196)
T ss_dssp -------CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHH
T ss_pred hhccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhcc
Confidence 3333446789999999999999999999999887633 455554442 23333 46899999999998 7778889999
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 85 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|++++|||+++++++..+..|+..+.......+.|+++|+||+|+.... +..++++.++..++
T Consensus 99 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 167 (196)
T 2atv_A 99 GEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFY 167 (196)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEE
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEE
Confidence 99999999999999999988887776554334689999999999997632 24556667776554
No 53
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.93 E-value=4.8e-25 Score=149.51 Aligned_cols=135 Identities=16% Similarity=0.252 Sum_probs=101.4
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEE-EEEE--cCeEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
..+.+||+++|++|||||||++++.+..+.. ..+|.+..+. .... ..+.+.+|||||++.+... ..+++.+|+++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i 96 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL 96 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence 3567999999999999999999999988764 3556654432 2233 3478999999999988875 67899999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCC--CCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCccc
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSLR 149 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~~ 149 (153)
+|||+++++++..+..|+..+..... ..+.|+++|+||+|+.+.. +..++++.++..+++
T Consensus 97 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 163 (187)
T 3c5c_A 97 VVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFE 163 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEE
Confidence 99999999999999888877654321 1478999999999997532 355677788876553
No 54
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.93 E-value=1.3e-24 Score=147.74 Aligned_cols=133 Identities=23% Similarity=0.415 Sum_probs=104.8
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEE--EEEE--cCeEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
.+.+||+++|++|+|||||++++.+..+.. ..++.+.... .+.. ....+.+||+||++++...+..+++++|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 456999999999999999999999988763 3455554443 2333 3478999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|+|++++.++..+..|+..+... ...+.|+++|+||+|+.... ...++++..+...+
T Consensus 103 ~v~D~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
T 2oil_A 103 LVFDLTKHQTYAVVERWLKELYDH-AEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFL 165 (193)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHTT-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEE
Confidence 999999999998888888777553 33679999999999997642 24455556665443
No 55
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.93 E-value=1.1e-24 Score=149.15 Aligned_cols=136 Identities=19% Similarity=0.346 Sum_probs=107.5
Q ss_pred cccCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEE-EEEEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCEE
Q 031796 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (153)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~-~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 88 (153)
...+.+||+++|++|||||||++++.+..+... .+|.+... ..+...+ +.+.+||+||++++...+..+++.+|++
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 89 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 89 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence 345679999999999999999999998876543 44444333 3344443 5899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
++|||+++.+++..+..|+..+.......+.|+++|+||+|+.+.. +..++++..+.+++
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 154 (206)
T 2bov_A 90 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYV 154 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEE
Confidence 9999999999999998888887665444589999999999997642 24456666666554
No 56
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.93 E-value=1.4e-25 Score=151.62 Aligned_cols=117 Identities=17% Similarity=0.272 Sum_probs=92.4
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEE-EEEE--cCeEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
....+||+++|++|+|||||++++.+..+.. ..+|.+..+. .+.. ..+.+.+||+||++.+...+..+++++|+++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 3567999999999999999999999988764 3555554442 2222 3478999999999999999999999999999
Q ss_pred EEEECCCcccHHHHH-HHHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 90 FVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
+|||+++++++..+. .|+..+... .++.|+++|+||+|+.+
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRT 125 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGG
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhc
Confidence 999999999999884 454444322 25799999999999974
No 57
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.93 E-value=9.4e-25 Score=147.32 Aligned_cols=133 Identities=21% Similarity=0.386 Sum_probs=104.8
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEE--EEEEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
.+.+||+++|++|+|||||++++.+..+.. ..++.+.+. ..+...+ ..+.+||+||++.+...+..+++++|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 456999999999999999999999888763 355555443 3444444 68999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|+|++++.++..+..|+..+... ...+.|+++|+||+|+.... +..++++..+..++
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 150 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARML-ASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFL 150 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEE
Confidence 999999999999888887765432 22579999999999997532 24455666665544
No 58
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.93 E-value=4.6e-25 Score=149.90 Aligned_cols=131 Identities=23% Similarity=0.291 Sum_probs=98.0
Q ss_pred cccCccEEEEEcCCCCCHHHHHHhHhcCCcccc-----------cCceeeEEEEE-----EEcCeEEEEEEcCCCCCchh
Q 031796 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----------IPTIGFNVETV-----EYKNISFTVWDVGGQDKIRP 76 (153)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-----------~~t~~~~~~~~-----~~~~~~~~i~D~~g~~~~~~ 76 (153)
.....+||+++|++|||||||++.+.+...... .+|.+.++... +...+.+.+|||||++.+..
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 346679999999999999999976665433221 23444444322 22346899999999999999
Q ss_pred cHHHhhcCCCEEEEEEECC------CcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhH---HHHHhCC
Q 031796 77 LWRHYFQNTQGLIFVVDSN------DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE---ITDKLGL 145 (153)
Q Consensus 77 ~~~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~---~~~~~~~ 145 (153)
.+..+++++|++++|||++ +.+++..+..|+..+. ....+.|+++|+||+|+.++...++ +++..+.
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~--~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~ 165 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG--LTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGK 165 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT--CCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCC
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc--cccCCCCEEEEEEchhcccccCHHHHHHHHHhcCC
Confidence 9999999999999999999 5567777777777662 2346899999999999987765444 4444455
No 59
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=7.9e-25 Score=150.29 Aligned_cols=133 Identities=22% Similarity=0.402 Sum_probs=105.2
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEE--EEEEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
.+.+||+++|++|+|||||++++.+..+.. ..+|.+.++ ..+...+ +.+.+|||||++++...+..+++++|+++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 456899999999999999999999887763 355655444 3444444 68999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ..+++++..+..++
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 166 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYL 166 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEE
Confidence 999999999999888887766432 23579999999999997532 24456666676554
No 60
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.93 E-value=1.1e-24 Score=146.72 Aligned_cols=135 Identities=19% Similarity=0.356 Sum_probs=105.6
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEE-EEEEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~-~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
..+.+||+++|++|+|||||++++.+..+... .++..... ..+...+ +.+.+||+||++++...+..+++.+|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 94 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence 35679999999999999999999998887643 34444333 2334443 68999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|||++++.++.....|+..+.......+.|+++|+||+|+.+.. +..++++..+...+
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 158 (187)
T 2a9k_A 95 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYV 158 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEE
Confidence 999999999999998888887665444579999999999997642 24456666666544
No 61
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.93 E-value=4e-25 Score=146.84 Aligned_cols=132 Identities=24% Similarity=0.508 Sum_probs=100.9
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEE--EEEEEc--CeEEEEEEcCCCCCchhcHHHhhcCCCEEEE
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 90 (153)
..+||+++|++|+|||||++++.+..+.. ..++.+.++ ..+... .+.+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 45899999999999999999999888753 345555443 334433 3689999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC----CHhHHHHHhCCCcc
Q 031796 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSL 148 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~----~~~~~~~~~~~~~~ 148 (153)
|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.... ..+++++..+.+.+
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 142 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFI 142 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEE
Confidence 999999999988888877765432 2578999999999995432 24556777776654
No 62
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.93 E-value=3.6e-25 Score=147.19 Aligned_cols=133 Identities=20% Similarity=0.420 Sum_probs=98.0
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEE--EEEE--cCeEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
.+.+||+++|++|+|||||++++.+..+.. ..++.+.++. .+.. ..+.+.+||+||++++...+..+++++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 567999999999999999999999887653 4556555443 3333 3368999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|+|+++..++..+..|+..+... ...+.|+++|+||+|+.++. +.+++++..+...+
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 146 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHY 146 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEE
Confidence 999999999999888877765332 22478999999999997632 34556666666554
No 63
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.93 E-value=1.4e-24 Score=148.94 Aligned_cols=133 Identities=25% Similarity=0.449 Sum_probs=105.7
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEE--EEEEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
...+||+++|++|+|||||++++.+..+.. ..++.+.++ ..+...+ +.+.+|||||++.+...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 456899999999999999999999988763 345555443 3444444 68999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.. ...++++..+++.+
T Consensus 86 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 148 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFL 148 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEE
Confidence 9999999999999888877664432 3579999999999997643 24456666676654
No 64
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.92 E-value=7.7e-25 Score=146.90 Aligned_cols=112 Identities=13% Similarity=0.183 Sum_probs=88.9
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEE-EEEEEc--CeEEEEEEcCCCCCchhcHHHhhcCCCEEEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 91 (153)
.+.+||+++|++|||||||++++.++.+....||.+..+ ..+... .+.+.+|||||+++ ..+++++|++++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv 79 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFV 79 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEE
Confidence 467999999999999999999999988876666655443 233333 36899999999987 4678899999999
Q ss_pred EECCCcccHHHHHHHHHHH--HcCCCCCCceEEEEEeCCCcc
Q 031796 92 VDSNDRDRVVEARDELHRM--LNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~--~~~~~~~~~pii~v~~K~Dl~ 131 (153)
||+++++++..+..|+..+ .......++|+++|+||+|+.
T Consensus 80 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 80 FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred EECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9999999999988864333 233333679999999999994
No 65
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.92 E-value=1.2e-24 Score=148.62 Aligned_cols=135 Identities=17% Similarity=0.255 Sum_probs=100.3
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCcc-cccCcee--eEEEEEEEc--CeEEEEEEcCCCCCchh-cHHHhhcCCCE
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYK--NISFTVWDVGGQDKIRP-LWRHYFQNTQG 87 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~-~~~~t~~--~~~~~~~~~--~~~~~i~D~~g~~~~~~-~~~~~~~~~~~ 87 (153)
....+||+++|++|||||||++++.+.... ...+++. .....+... .+.+.+||++|++.+.. .+..+++.+|+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~ 99 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA 99 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence 356699999999999999999999754332 2223322 222333333 46889999999998765 77888999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+++|||++++++|..+..|+..+.......++|+++|+||+|+.... +.+++++.++..++
T Consensus 100 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~ 165 (195)
T 3cbq_A 100 FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHI 165 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEE
Confidence 99999999999999999998877654333579999999999997542 24556666666554
No 66
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=1.9e-25 Score=151.79 Aligned_cols=133 Identities=20% Similarity=0.466 Sum_probs=105.2
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEE--EEEE--EcCeEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~--~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
...+||+++|++|+|||||++++.+..+... .++.+.+. ..+. ...+.+.+||+||++.+...+..+++++|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 5669999999999999999999998876532 34443332 3333 35689999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|||++++.++..+..|+..+.. ....+.|+++|+||+|+.+.. ..+++++..++.++
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 163 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKT-YSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFF 163 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHH-hcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEE
Confidence 99999999999988887776644 233589999999999997542 24557777777655
No 67
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.92 E-value=1.9e-24 Score=146.87 Aligned_cols=133 Identities=21% Similarity=0.399 Sum_probs=103.3
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeE--EEEEEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
...+||+++|++|+|||||++++.+..+.. ..++.+.+ ...+...+ +.+.+||+||++++...+..+++++|+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 556899999999999999999999887653 34444433 33444444 68999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|+|+++.+++..+..|+..+... ...+.|+++|+||+|+.... +.+++++..+..++
T Consensus 99 ~v~d~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 161 (191)
T 2a5j_A 99 LVYDITRRETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFM 161 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEE
Confidence 999999999999988887776543 23579999999999997532 24556666676554
No 68
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.92 E-value=3.6e-24 Score=141.37 Aligned_cols=133 Identities=19% Similarity=0.356 Sum_probs=103.6
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEE-EEEEEc--CeEEEEEEcCCCCCchhcHHHhhcCCCEEEEE
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~-~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 91 (153)
+.+||+++|++|+|||||++++.+..+... .++..... ..+... .+.+.+||+||++++...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 357999999999999999999998876533 34443332 233333 36789999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC----CHhHHHHHhCCCcc
Q 031796 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSL 148 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~----~~~~~~~~~~~~~~ 148 (153)
+|+++..++.....|+..+.......+.|+++|+||+|+.... ..+++++..+.+.+
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 142 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYI 142 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEE
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEE
Confidence 9999999999888887776554333579999999999987632 34566677776654
No 69
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.92 E-value=7.5e-26 Score=155.09 Aligned_cols=134 Identities=18% Similarity=0.256 Sum_probs=80.1
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcC--Ccc-cccCceeeE--EEEEEEc----CeEEEEEEcCCCCCchhcHHHhhcCC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLG--EIV-TTIPTIGFN--VETVEYK----NISFTVWDVGGQDKIRPLWRHYFQNT 85 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~--~~~-~~~~t~~~~--~~~~~~~----~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (153)
...+||+++|++|+|||||++++.+. .+. ...+|++.+ ...+... ...+.+||+||++.+...+..+++++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 46689999999999999999999988 665 335566533 3445544 56899999999999999999999999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHHcCCC--CCCceEEEEEeCCCccC-C--C---CHhHHHHHhCCCcc
Q 031796 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPN-A--M---NAAEITDKLGLHSL 148 (153)
Q Consensus 86 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~pii~v~~K~Dl~~-~--~---~~~~~~~~~~~~~~ 148 (153)
|++++|||++++.++..+..|+..+..... ..+.|+++|+||+|+.. . . +..++++.++...+
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~ 168 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFF 168 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEE
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEE
Confidence 999999999999999999888877755332 25799999999999976 2 2 34566667776544
No 70
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=3.7e-24 Score=147.35 Aligned_cols=134 Identities=24% Similarity=0.505 Sum_probs=104.2
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCcc-cccCceeeE--EEEEEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCEE
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 88 (153)
....++|+++|++|+|||||++++.+..+. ...++.+.+ ...+...+ +.+.+|||||++.+...+..+++.+|++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 356799999999999999999999988765 334555433 34455555 7899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC----CHhHHHHHhCCCcc
Q 031796 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSL 148 (153)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~----~~~~~~~~~~~~~~ 148 (153)
++|||++++.++..+..|+..+.... ..+.|+++|+||+|+.... ...++++.++++.+
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 159 (213)
T 3cph_A 97 ILVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFI 159 (213)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEE
Confidence 99999999999988888777665432 2478999999999995432 24556677776655
No 71
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.92 E-value=3.5e-25 Score=152.48 Aligned_cols=117 Identities=17% Similarity=0.292 Sum_probs=93.0
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEEE-EEEE--cCeEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
....+||+++|++|||||||++++.+..+... .+|.+..+. .+.. ..+.+.+|||||++.+...+..+++++|+++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 104 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 104 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence 35679999999999999999999999887643 556554442 2222 3478999999999999999999999999999
Q ss_pred EEEECCCcccHHHH-HHHHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 90 FVVDSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 90 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
+|||+++++++..+ ..|+..+... .++.|+++|+||+|+..
T Consensus 105 lv~D~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 105 ICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRT 146 (205)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGG
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEechhhcc
Confidence 99999999999988 4554444332 24799999999999974
No 72
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.92 E-value=2.9e-25 Score=151.80 Aligned_cols=137 Identities=19% Similarity=0.399 Sum_probs=96.5
Q ss_pred hhcccCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEE--EEEEEcC--eEEEEEEcCCCCCchhcHHHhhcCC
Q 031796 11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNT 85 (153)
Q Consensus 11 ~~~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (153)
.....+.+||+++|++|+|||||++++.+..+.. ..++.+.++ ..+...+ ..+.+||+||++++...+..+++++
T Consensus 22 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 101 (199)
T 2p5s_A 22 SFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKA 101 (199)
T ss_dssp ------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHC
T ss_pred CcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhC
Confidence 3344667999999999999999999999887653 345544332 3344433 6799999999999999999999999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccC------C--C---CHhHHHHHhCCCcc
Q 031796 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN------A--M---NAAEITDKLGLHSL 148 (153)
Q Consensus 86 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~------~--~---~~~~~~~~~~~~~~ 148 (153)
|++++|||++++.++..+..|+..+.. ....+.|+++|+||+|+.+ . . ..+++++..+..++
T Consensus 102 d~iilv~d~~~~~s~~~~~~~~~~i~~-~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 174 (199)
T 2p5s_A 102 DGVLLLYDVTCEKSFLNIREWVDMIED-AAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFC 174 (199)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHH-HC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEE
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHH-hcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEE
Confidence 999999999999999988877765533 2235789999999999962 1 1 24456666676554
No 73
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.92 E-value=4.2e-24 Score=145.63 Aligned_cols=131 Identities=21% Similarity=0.398 Sum_probs=101.9
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEE--EEEEcC-------------------------------
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYKN------------------------------- 60 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~--~~~~~~------------------------------- 60 (153)
...+||+++|++|+|||||++++.+..+.. ..+|.+..+. .+...+
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 467999999999999999999999987763 3455554433 233222
Q ss_pred --------eEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 61 --------ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 61 --------~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
..+.+||+||++.+...+..+++.+|++++|+|++++.++..+..|+..+.... ..|+++|+||+|+..
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D~~~ 161 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKIDKNK 161 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTTCC-
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCCccc
Confidence 789999999999999999999999999999999999999999888888776542 399999999999432
Q ss_pred -CC---CHhHHHHHhCCCcc
Q 031796 133 -AM---NAAEITDKLGLHSL 148 (153)
Q Consensus 133 -~~---~~~~~~~~~~~~~~ 148 (153)
.. +..++++..+...+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~ 181 (208)
T 3clv_A 162 FQVDILEVQKYAQDNNLLFI 181 (208)
T ss_dssp CCSCHHHHHHHHHHTTCEEE
T ss_pred ccCCHHHHHHHHHHcCCcEE
Confidence 22 24455666666544
No 74
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.92 E-value=3e-24 Score=143.68 Aligned_cols=133 Identities=18% Similarity=0.417 Sum_probs=104.2
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEE--EEEEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
.+.+||+++|++|+|||||++++.+..+.. ..++.+.+. ..+...+ ..+.+|||||++.+...+..+++++|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 456999999999999999999999887663 345555443 3444444 68999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ...++++..+.+.+
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 154 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFI 154 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEE
Confidence 9999999999998888887765432 2579999999999997543 23445556665544
No 75
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=8.3e-25 Score=148.78 Aligned_cols=116 Identities=16% Similarity=0.222 Sum_probs=93.8
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEE-EEEEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCEEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~-~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 90 (153)
.+.+||+++|++|+|||||++++.+..+... .+|.+..+ ..+...+ +.+.+||+||++++...+..+++++|++++
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 95 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI 95 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEE
Confidence 4668999999999999999999998877643 45554333 2333333 789999999999999999999999999999
Q ss_pred EEECCCcccHHHHH-HHHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 91 VVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
|||+++++++.... .|+..+... .++.|+++|+||+|+..
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~ 136 (194)
T 2atx_A 96 CFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRD 136 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhcc
Confidence 99999999999887 455544332 24799999999999975
No 76
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=2.5e-24 Score=143.10 Aligned_cols=133 Identities=14% Similarity=0.269 Sum_probs=100.5
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEEE-EEE--cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEE
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~~-~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 91 (153)
+.+||+++|++|+|||||++++.+..+.. ..++.+..... ... ....+.+|||||++++...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 46899999999999999999999887653 34454444332 222 236799999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCC-CCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 92 VDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|++++.++.....++..+.... ...+.|+++|+||+|+.... ....+++..+.+.+
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 144 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFM 144 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEE
Confidence 99999999988887776654321 22478999999999997543 23445566665544
No 77
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.92 E-value=3.5e-24 Score=143.38 Aligned_cols=118 Identities=16% Similarity=0.408 Sum_probs=94.9
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEE--EEEEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
.+.+||+++|++|+|||||++++.+..+.. ..++.+.+. ..+...+ +.+.+||+||++.+...+..+++++|+++
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 84 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL 84 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEE
Confidence 556999999999999999999999887653 355655544 3444444 68999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcC---CCCCCceEEEEEeCCCccC
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNE---DELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~pii~v~~K~Dl~~ 132 (153)
+|+|+++..++..+..|+..+... ....+.|+++|+||+|+..
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 130 (177)
T 1wms_A 85 LTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE 130 (177)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccc
Confidence 999999999998887777766432 1235789999999999974
No 78
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.92 E-value=1.1e-24 Score=149.19 Aligned_cols=133 Identities=22% Similarity=0.380 Sum_probs=98.5
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeE--EEEEEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
.+.+||+++|++|+|||||++++.+..+.. ..++.+.+ ...+...+ ..+.+||+||++.+...+..+++++|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 556999999999999999999999887653 34554433 34444444 78999999999999888999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.... +..++++..+..++
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 165 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFL 165 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHT-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEE
Confidence 9999999999999888887764432 2579999999999997532 24456666665544
No 79
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.92 E-value=2.9e-25 Score=151.81 Aligned_cols=134 Identities=27% Similarity=0.521 Sum_probs=102.6
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCcee--eEEEEEEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~--~~~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
...+||+++|++|+|||||++++.+..+... .++.+ .....+...+ +.+.+|||||++.+...+..+++++|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 4569999999999999999999998876532 34433 4444555555 68999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC-----CCHhHHHHHhCCCccc
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLR 149 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~-----~~~~~~~~~~~~~~~~ 149 (153)
+|||+++..++..+..|+..+... ...+.|+++|+||+|+... ...+++++.++.+.+.
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 174 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLE 174 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHSC-C-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-ccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEE
Confidence 999999999999998887776443 3357999999999999753 3567788888877653
No 80
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.5e-24 Score=149.66 Aligned_cols=133 Identities=20% Similarity=0.366 Sum_probs=100.4
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcc-cccCceeeE--EEEEEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
...+||+++|++|+|||||++++.+..+. ...++.+.+ ...+...+ +.+.+|||||++++...+..+++.+|+++
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 45699999999999999999999998876 334555533 33445554 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.... +..++++..+..++
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 153 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFT 153 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEE
Confidence 9999999999999888877764432 3578999999999997532 24456666666554
No 81
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.92 E-value=2.2e-25 Score=149.88 Aligned_cols=129 Identities=18% Similarity=0.294 Sum_probs=90.9
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEEE---EEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 90 (153)
.+.+||+++|++|+|||||++++.+..+... .+|.+..+. ......+.+.+|||||++++...+..+++++|++++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 85 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence 5679999999999999999999998876533 444432221 233345678899999999999999999999999999
Q ss_pred EEECCCcccHHHHHH-HHHHHHcCCCCCCceEEEEEeCCCccCCC---------------CHhHHHHHhCC
Q 031796 91 VVDSNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPNAM---------------NAAEITDKLGL 145 (153)
Q Consensus 91 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~pii~v~~K~Dl~~~~---------------~~~~~~~~~~~ 145 (153)
|||++++.++..+.. |+..+... . ++.|+++|+||+|+.+.. +..++++.++.
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 154 (182)
T 3bwd_D 86 AFSLISKASYENVSKKWIPELKHY-A-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGA 154 (182)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH-C-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCC
Confidence 999999999998874 44444332 1 479999999999986542 23566777775
No 82
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.92 E-value=4.3e-24 Score=144.72 Aligned_cols=135 Identities=20% Similarity=0.354 Sum_probs=94.3
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEE-EEEEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~-~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
..+.+||+++|.+|||||||++++.++.+... .++..... ..+...+ +.+.+||+||++++...+..+++.+|+++
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 35668999999999999999999998876533 34443332 2333333 67999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC----CHhHHHHHhCCCcc
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~----~~~~~~~~~~~~~~ 148 (153)
+|+|+++..++..+..|+..+.......+.|+++|+||+|+.... +.+++++.+++..+
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 160 (190)
T 3con_A 98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFI 160 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEE
Confidence 999999999999888877766543333578999999999987532 35567777776654
No 83
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.92 E-value=7.7e-25 Score=150.45 Aligned_cols=120 Identities=19% Similarity=0.300 Sum_probs=91.9
Q ss_pred cccCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEE-EEEEE--cCeEEEEEEcCCCCCchhcHHHhhcCCCEE
Q 031796 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (153)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~-~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 88 (153)
...+.+||+++|.+|+|||||++++.++.+... .++..... ..+.. ..+.+.+|||||++++...+..+++++|++
T Consensus 26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 346789999999999999999999998877633 44443332 22222 346777999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
++|||++++.++......|...+.... .+.|+++|+||+|+...
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~ 149 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 149 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccc
Confidence 999999999999998744444444322 57999999999999764
No 84
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.92 E-value=1.7e-24 Score=148.29 Aligned_cols=120 Identities=19% Similarity=0.357 Sum_probs=94.4
Q ss_pred cccCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEE-EEEEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCEE
Q 031796 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (153)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~-~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 88 (153)
+....+||+++|++|+|||||++++.+..+... .+|.+..+ ..+...+ +.+.+||+||++++...+..+++++|++
T Consensus 21 m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (201)
T 2gco_A 21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (201)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence 456679999999999999999999998877633 44544333 2334433 6899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
++|||+++++++......|...+... .++.|+++|+||+|+...
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 101 LMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRQD 144 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECGGGTTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEecHHhhcC
Confidence 99999999999998854444443332 247899999999999754
No 85
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.92 E-value=5.7e-24 Score=144.69 Aligned_cols=119 Identities=23% Similarity=0.479 Sum_probs=92.0
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeE--EEEEEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCEE
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 88 (153)
....+||+++|++|+|||||++++.+..+.. ..++.+.+ ...+...+ +.+.+||+||++++...+..+++++|++
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i 102 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI 102 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 3556899999999999999999999887653 34454433 34444444 6899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
++|+|+++..++..+..|+..+.. ....+.|+++|+||+|+...
T Consensus 103 ilV~D~~~~~s~~~~~~~~~~i~~-~~~~~~piilV~NK~Dl~~~ 146 (192)
T 2il1_A 103 ILVYDITKKETFDDLPKWMKMIDK-YASEDAELLLVGNKLDCETD 146 (192)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECGGGGGG
T ss_pred EEEEECcCHHHHHHHHHHHHHHHH-hcCCCCcEEEEEECcccccc
Confidence 999999999999888777655433 23357999999999999764
No 86
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.91 E-value=9.3e-25 Score=151.54 Aligned_cols=134 Identities=22% Similarity=0.364 Sum_probs=104.7
Q ss_pred cccCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEEEE--EE--cCeEEEEEEcCCCCCchhcHHHhhcCCCE
Q 031796 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETV--EY--KNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (153)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~~~--~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 87 (153)
.....+||+++|.+|||||||+++++.+.+.. ..++.+.+.... .. ..+.+.+|||||++.+...+..+++++|+
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 90 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC 90 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence 34667999999999999999999977665442 345554444332 22 34789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC---CHhHHHHHhCCCcc
Q 031796 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSL 148 (153)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~---~~~~~~~~~~~~~~ 148 (153)
+++|||+++..++..+..|+..+.... .+.|+++|+||+|+.+.. ...++++..+..++
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 152 (221)
T 3gj0_A 91 AIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYY 152 (221)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccHHHHHHHHHcCCEEE
Confidence 999999999999999988888776542 478999999999997643 24456666666554
No 87
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.91 E-value=1.3e-24 Score=150.37 Aligned_cols=117 Identities=19% Similarity=0.343 Sum_probs=75.1
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEE-EEEEEc--CeEEEEEEcCCCCCchhcHHHhhcCCCEEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~-~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 90 (153)
.+.+||+++|++|+|||||++++.+..+... .+|....+ ..+... .+.+.+|||||++++...+..+++++|++++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 4669999999999999999999998876533 44444332 223333 3689999999999999999999999999999
Q ss_pred EEECCCcccHHHHHH-HHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 91 VVDSNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 91 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
|||++++.++..+.. |+..+... ..+.|+++|+||+|+...
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~ 153 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTDLRKD 153 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECGGGGSC
T ss_pred EEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhhcc
Confidence 999999999998874 44444332 247899999999999764
No 88
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.91 E-value=3.2e-24 Score=146.58 Aligned_cols=117 Identities=19% Similarity=0.266 Sum_probs=88.2
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEEE-EEEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE-TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~~-~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
..+.+||+++|++|+|||||++++.+..+... .+|+...+. .+...+ +.+.+||+||++++...+..+++++|+++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 96 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFL 96 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEE
Confidence 46679999999999999999999998876643 455544332 334444 57889999999999999999999999999
Q ss_pred EEEECCCcccHHHHH-HHHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 90 FVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
+|||+++++++..+. .|+..+.... ++.|+++|+||+|+..
T Consensus 97 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 97 LCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLRE 138 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGG
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhh
Confidence 999999999999887 4554443322 4799999999999975
No 89
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.91 E-value=3.6e-24 Score=143.65 Aligned_cols=119 Identities=18% Similarity=0.342 Sum_probs=84.0
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEE--EEEEEc---CeEEEEEEcCCCCCchhcHHHhhcCCCE
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK---NISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~--~~~~~~---~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 87 (153)
..+.+||+++|++|+|||||++++.+..+.. ..++.+.+. ..+... ...+.+||+||++.+...+..+++++|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 3567999999999999999999999887653 344544333 333332 4789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCC---CCCCceEEEEEeCCCccC
Q 031796 88 LIFVVDSNDRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~pii~v~~K~Dl~~ 132 (153)
+++|+|++++.++..+..|+..+.... ...+.|+++|+||+|+..
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 132 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE 132 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCG
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccc
Confidence 999999999999998888877665422 235789999999999954
No 90
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.91 E-value=5.1e-25 Score=151.82 Aligned_cols=129 Identities=19% Similarity=0.292 Sum_probs=98.4
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEEE-EEEE--cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 90 (153)
.+.+||+++|++|+|||||++++.+..+... .+|.+..+. .+.. ..+.+.+|||||++++...+..+++++|++++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il 86 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 86 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence 4669999999999999999999998887633 455544332 2333 33789999999999999999999999999999
Q ss_pred EEECCCcccHHHHH-HHHHHHHcCCCCCCceEEEEEeCCCccCCC-------------CHhHHHHHhCC
Q 031796 91 VVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAM-------------NAAEITDKLGL 145 (153)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-------------~~~~~~~~~~~ 145 (153)
|||+++++++..+. .|+..+... . ++.|+++|+||+|+.+.. +.+++++.++.
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 153 (212)
T 2j0v_A 87 AFSLISKASYENVLKKWMPELRRF-A-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGA 153 (212)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH-C-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCC
Confidence 99999999999887 454444332 1 479999999999997532 24556777775
No 91
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.91 E-value=5.4e-24 Score=145.93 Aligned_cols=120 Identities=19% Similarity=0.350 Sum_probs=95.5
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEE--EEEEc--CeEEEEEEcCCCCCchhcHHHhhcCCCEE
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 88 (153)
....+||+++|++|+|||||++++.+..+.. ..++.+.+.. .+... .+.+.+||+||++.+...+..+++++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 3567999999999999999999999987653 3455554443 33333 37899999999999999989999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCC---CCCCceEEEEEeCCCccCC
Q 031796 89 IFVVDSNDRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~pii~v~~K~Dl~~~ 133 (153)
++|+|++++.++..+..|+..+.... ...+.|+++|+||+|+...
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR 132 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCccc
Confidence 99999999999988887777665432 1247899999999999743
No 92
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=6.4e-24 Score=144.63 Aligned_cols=134 Identities=15% Similarity=0.275 Sum_probs=101.9
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEEE-EEE--cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~~-~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 90 (153)
...++|+++|++|+|||||++++.+..+.. ..++.+..+.. +.. ....+.+|||||++.+...+..+++.+|++++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL 85 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence 567999999999999999999999887653 34554443322 222 33689999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCC-CCCCceEEEEEeCCCccCCC----CHhHHHHHhCCCcc
Q 031796 91 VVDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSL 148 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~pii~v~~K~Dl~~~~----~~~~~~~~~~~~~~ 148 (153)
|||++++.++..+..++..+.... ...+.|+++|+||+|+.... ...++++.++..++
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 148 (199)
T 2gf0_A 86 VFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFM 148 (199)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEE
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEE
Confidence 999999999988877765543321 12468999999999997532 23455666665544
No 93
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.91 E-value=2.5e-24 Score=144.98 Aligned_cols=117 Identities=19% Similarity=0.277 Sum_probs=92.0
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEE-EEEEEc--CeEEEEEEcCCCCCchhcHHHhhcCCCEEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~-~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 90 (153)
.+.+||+++|++|+|||||++++.+..+... .+|..... ..+... .+.+.+||+||++++...+..+++++|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 4578999999999999999999998876533 44444332 223333 3678899999999999999999999999999
Q ss_pred EEECCCcccHHHHHH-HHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 91 VVDSNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 91 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
|||++++.++..... |+..+... . ++.|+++|+||+|+...
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~piilv~nK~Dl~~~ 124 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHH-C-PNTPIILVGTKLDLRDD 124 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH-S-TTSCEEEEEECHHHHTC
T ss_pred EEECCChhhHHHHHHHHHHHHHHh-C-CCCCEEEEeEccccccc
Confidence 999999999998874 44444332 1 37899999999999753
No 94
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=8.2e-24 Score=145.47 Aligned_cols=119 Identities=20% Similarity=0.355 Sum_probs=91.2
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEE-EEEEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~-~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
....+||+++|++|+|||||++++.+..+... .+|.+... ..+...+ +.+.+|||||++++...+..+++++|+++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 35678999999999999999999999887633 44544443 2233443 68999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
+|||+++++++......|...+... .++.|+++|+||+|+...
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHF-CPNVPIILVANKKDLRSD 144 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECGGGGGC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEchhhhcc
Confidence 9999999999988854444433332 247899999999999754
No 95
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=1.2e-23 Score=145.57 Aligned_cols=134 Identities=15% Similarity=0.187 Sum_probs=97.6
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCC--cccccCceeeE--EEEEEEcC--eEEEEEEcCCCCC-chhcHHHhhcCCCE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIGFN--VETVEYKN--ISFTVWDVGGQDK-IRPLWRHYFQNTQG 87 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~--~~~~~~t~~~~--~~~~~~~~--~~~~i~D~~g~~~-~~~~~~~~~~~~~~ 87 (153)
...+||+++|++|||||||+++|.+.. +....++++.+ ...+...+ +.+.+|||+|++. +......+++.+|+
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 455899999999999999999998644 33333444333 23344443 5778999999886 45566777889999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC--C---HhHHHHHhCCCcc
Q 031796 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--N---AAEITDKLGLHSL 148 (153)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~--~---~~~~~~~~~~~~~ 148 (153)
+++|||+++.++|..+..|+..+.......++|+++|+||+|+.... . .+.+++.++..++
T Consensus 115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~ 180 (211)
T 2g3y_A 115 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFI 180 (211)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEE
Confidence 99999999999999998888776543333579999999999997532 2 3345666666554
No 96
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.91 E-value=3.7e-24 Score=148.07 Aligned_cols=118 Identities=26% Similarity=0.382 Sum_probs=93.7
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEEEEEEE--c-C--eEEEEEEcCCCCCchhcHHHhhcCCCEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEY--K-N--ISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~~~~~~--~-~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 88 (153)
...+||+++|.+|+|||||++++.+..+... .++.+........ . + +.+.+|||||++.+...+..+++++|++
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA 88 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence 5679999999999999999999998876533 4555544443332 1 1 7899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
++|+|+++..++..+..|+..+... ...+.|+++|+||+|+.+.
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~ 132 (218)
T 4djt_A 89 ILFFDVTSRITCQNLARWVKEFQAV-VGNEAPIVVCANKIDIKNR 132 (218)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-HCSSSCEEEEEECTTCC--
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccc
Confidence 9999999999998888777766433 2245899999999999764
No 97
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.91 E-value=8.2e-25 Score=147.95 Aligned_cols=116 Identities=19% Similarity=0.365 Sum_probs=88.5
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcC--Ccc-cccCceeeEEEEEE-------EcCeEEEEEEcCCCCCchhcHHHhhcCCC
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLG--EIV-TTIPTIGFNVETVE-------YKNISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~--~~~-~~~~t~~~~~~~~~-------~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 86 (153)
.+||+++|++|||||||++++.+. .+. .+.+|.+.++.... ...+.+.+|||+|++++...+..++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999985 343 34567666654433 24678999999999999988899999999
Q ss_pred EEEEEEECCCc-ccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 87 GLIFVVDSNDR-DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 87 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
++++|||+++. .++..+..|+..+.... ++.|+++|+||+|+.++.
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~ 128 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEK 128 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHH
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccch
Confidence 99999999987 57888888887765432 478999999999997643
No 98
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.5e-24 Score=146.19 Aligned_cols=126 Identities=27% Similarity=0.388 Sum_probs=97.4
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCcccc----cCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcC----C
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN----T 85 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~----~ 85 (153)
..+.++|+++|++|||||||++++.+..+... .++... ......+.+|||||++.+...+..++++ +
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 119 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-----DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 119 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee-----eecCCeEEEEECCCCchHHHHHHHHHHhhcccC
Confidence 36679999999999999999999998875432 222221 2256789999999999998888777776 8
Q ss_pred CEEEEEEECC-CcccHHHHHHHHHHHHcCC---CCCCceEEEEEeCCCccCCCCHhHHHHHhC
Q 031796 86 QGLIFVVDSN-DRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPNAMNAAEITDKLG 144 (153)
Q Consensus 86 ~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~pii~v~~K~Dl~~~~~~~~~~~~~~ 144 (153)
|++++|+|++ +.+++.....|+..++... ...+.|+++|+||+|+.......++.+.+.
T Consensus 120 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~ 182 (193)
T 2ged_A 120 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALE 182 (193)
T ss_dssp EEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHH
T ss_pred CEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHH
Confidence 9999999999 8889999888888776432 225799999999999998877776666553
No 99
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.90 E-value=1.1e-23 Score=143.73 Aligned_cols=119 Identities=22% Similarity=0.305 Sum_probs=86.5
Q ss_pred hcccCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeE----EEEEE-EcCeEEEEEEcCCCCCchhcH---HHhhc
Q 031796 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN----VETVE-YKNISFTVWDVGGQDKIRPLW---RHYFQ 83 (153)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~----~~~~~-~~~~~~~i~D~~g~~~~~~~~---~~~~~ 83 (153)
...++.+||+++|++|||||||++++.+............. ...+. ...+.+.+||+||+++|.... ..+++
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 94 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR 94 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence 34577899999999999999999988775433221111111 11122 355899999999999987776 88999
Q ss_pred CCCEEEEEEECCCc--ccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 84 NTQGLIFVVDSNDR--DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 84 ~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
++|++++|||+++. +++..+..|+...... ..+.|+++|+||+|+..
T Consensus 95 ~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~ 143 (196)
T 3llu_A 95 GTGALIYVIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLS 143 (196)
T ss_dssp TCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSC
T ss_pred cCCEEEEEEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCc
Confidence 99999999999987 6667777777765322 25899999999999865
No 100
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.90 E-value=1.8e-23 Score=152.07 Aligned_cols=129 Identities=23% Similarity=0.328 Sum_probs=101.1
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCC--cc--cccCceeeEEEEEEE-cCeEEEEEEcCCCCCc-----hhcHHHhhcCC
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGE--IV--TTIPTIGFNVETVEY-KNISFTVWDVGGQDKI-----RPLWRHYFQNT 85 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~--~~--~~~~t~~~~~~~~~~-~~~~~~i~D~~g~~~~-----~~~~~~~~~~~ 85 (153)
..+||+++|++|||||||++++.++. +. ...+|.+.....+.. ..+.+.+|||||++.+ ...+..+++++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 45899999999999999999998873 32 345688888877775 5789999999999988 67888899999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHHcC-CCCCCceEEEEEeCCCccCC-----------CCHhHHHHHhC
Q 031796 86 QGLIFVVDSNDRDRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNA-----------MNAAEITDKLG 144 (153)
Q Consensus 86 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~pii~v~~K~Dl~~~-----------~~~~~~~~~~~ 144 (153)
|++++|||+++++++..+..|...+... ...+++|+++|+||+|+.+. .+.+++++.+|
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g 152 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFG 152 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcC
Confidence 9999999999999998886653322110 11257999999999999762 23456666766
No 101
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.90 E-value=1.3e-24 Score=158.06 Aligned_cols=112 Identities=20% Similarity=0.216 Sum_probs=85.7
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCCccc----ccCceeeEEEEEEEcCeEEEEEEcCCCCCchh---cHHHhhcCCCEEEEE
Q 031796 19 RILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEYKNISFTVWDVGGQDKIRP---LWRHYFQNTQGLIFV 91 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~~~~i~v 91 (153)
||+++|+.||||||+++++.++.++. ..||.+.+...+. ..+++++|||+||++|.. .+..++++++++++|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV 79 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV 79 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence 68999999999999999887664432 3578887776653 458999999999999964 468899999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcC--CCCCCceEEEEEeCCCccCC
Q 031796 92 VDSNDRDRVVEARDELHRMLNE--DELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~--~~~~~~pii~v~~K~Dl~~~ 133 (153)
||+++. +.+...||...+.. ...+++|++++|||+|+..+
T Consensus 80 ~Ditd~--~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 80 IDSQDE--YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSE 121 (331)
T ss_dssp CCCSSC--TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCS
T ss_pred EECCch--HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCch
Confidence 999987 33334444333221 11357999999999999764
No 102
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.90 E-value=7.7e-24 Score=146.47 Aligned_cols=119 Identities=24% Similarity=0.329 Sum_probs=95.3
Q ss_pred cccCccEEEEEcCCCCCHHHHHHhHhcCCccc----ccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcC----
Q 031796 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN---- 84 (153)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~---- 84 (153)
...+.++|+++|++|+|||||++++.+..+.. ..++....+ ....+.+||+||++.++..+..+++.
T Consensus 8 ~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 82 (218)
T 1nrj_B 8 QKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-----DGSGVTLVDFPGHVKLRYKLSDYLKTRAKF 82 (218)
T ss_dssp --CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-----GGSSCEEEECCCCGGGTHHHHHHHHHHGGG
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-----eCceEEEEECCCcHHHHHHHHHHHHhcccc
Confidence 34677999999999999999999999887653 233333222 56789999999999998888888887
Q ss_pred CCEEEEEEECC-CcccHHHHHHHHHHHHcCC---CCCCceEEEEEeCCCccCCCCH
Q 031796 85 TQGLIFVVDSN-DRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPNAMNA 136 (153)
Q Consensus 85 ~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~pii~v~~K~Dl~~~~~~ 136 (153)
+|++++|+|++ +++++.....|+..++... ...++|+++|+||+|+..+...
T Consensus 83 ~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 138 (218)
T 1nrj_B 83 VKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP 138 (218)
T ss_dssp EEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCH
Confidence 89999999999 8889998888888876532 2257999999999999876653
No 103
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.90 E-value=7.9e-23 Score=139.26 Aligned_cols=134 Identities=15% Similarity=0.186 Sum_probs=93.5
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCC--cccccCceeeEE--EEEEEcC--eEEEEEEcCCCCC-chhcHHHhhcCCCE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDK-IRPLWRHYFQNTQG 87 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~--~~~~~~t~~~~~--~~~~~~~--~~~~i~D~~g~~~-~~~~~~~~~~~~~~ 87 (153)
...+||+++|++|||||||+++|.+.. +....++++.+. ..+...+ +.+.+|||+|++. +......+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 456899999999999999999998643 333333333322 3344443 5778999999876 45566778889999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC--C---HhHHHHHhCCCcc
Q 031796 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--N---AAEITDKLGLHSL 148 (153)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~--~---~~~~~~~~~~~~~ 148 (153)
+++|||+++.++|.....|+..+.......+.|+++|+||+|+.... . ...++...+..++
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 149 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFI 149 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceE
Confidence 99999999999999998887766543223578999999999997532 1 2345555665544
No 104
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.81 E-value=1.1e-24 Score=149.49 Aligned_cols=119 Identities=19% Similarity=0.292 Sum_probs=93.0
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEE---EEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV---ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~---~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
..+.+||+++|++|+|||||++++.+..+... .+|..... .......+.+.+|||||++++...+..+++++|+++
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 36779999999999999999999998776533 33433222 123344577889999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
+|||++++.++......|...+.... ++.|+++|+||+|+...
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~ 149 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 149 (204)
Confidence 99999999999888744444434322 37999999999999753
No 105
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.88 E-value=7.8e-22 Score=131.98 Aligned_cols=116 Identities=20% Similarity=0.251 Sum_probs=88.8
Q ss_pred cccCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cC--ceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
...+.++|+++|++|+|||||++++.+..+... .+ +.......+...+..+.+|||||++++...+..+++.+|+++
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 346789999999999999999999998876532 23 333444566777889999999999999988888899999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
+|+|+++....... ..+..... .++|+++|+||+|+...
T Consensus 84 ~v~d~~~~~~~~~~-~~l~~~~~----~~~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 84 LVVAADDGVMPQTV-EAINHAKA----ANVPIIVAINKMDKPEA 122 (178)
T ss_dssp EEEETTCCCCHHHH-HHHHHHGG----GSCCEEEEEETTTSSCS
T ss_pred EEEECCCCCcHHHH-HHHHHHHh----CCCCEEEEEECccCCcC
Confidence 99999874322222 22222221 46899999999999864
No 106
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.88 E-value=7.5e-22 Score=131.18 Aligned_cols=126 Identities=23% Similarity=0.341 Sum_probs=90.9
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCcc-cccCc--eeeEEEEEEEcCeEEEEEEcCCCCCch------hcHHHhhc--C
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPT--IGFNVETVEYKNISFTVWDVGGQDKIR------PLWRHYFQ--N 84 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~-~~~~t--~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~--~ 84 (153)
+.++++++|++|+|||||++++.+..+. ...|+ .......+...+..+.+|||||++++. .....+++ +
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 81 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence 3579999999999999999999987653 33343 333445566678899999999998874 33455554 8
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC----CCHhHHHHHhCCCcc
Q 031796 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSL 148 (153)
Q Consensus 85 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~----~~~~~~~~~~~~~~~ 148 (153)
+|++++|+|+++.++ ...|+..+.. .+.|+++|+||+|+... .+.+++++.++.+++
T Consensus 82 ~~~~i~v~D~~~~~~---~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 142 (165)
T 2wji_A 82 PDLVVNIVDATALER---NLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVV 142 (165)
T ss_dssp CSEEEEEEETTCHHH---HHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEE
T ss_pred CCEEEEEecCCchhH---hHHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHHhCCCEE
Confidence 999999999987543 3345544433 36899999999998643 246778888887655
No 107
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.87 E-value=4.6e-21 Score=130.97 Aligned_cols=133 Identities=20% Similarity=0.395 Sum_probs=100.4
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeE--EEEEEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
...++++++|++|+|||||++++.+..+.. ..+|.+.. ...+...+ +.+.+||++|++.++..+..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 456899999999999999999999987653 34554433 34455544 67889999999999888888999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|+|.++..++.....|+..+... ...+.|+++|+||+|+.+.. .+..++...++..+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~ 145 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFI 145 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEE
Confidence 999999998888877776654321 22468999999999997532 24556666665443
No 108
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.87 E-value=3e-21 Score=130.36 Aligned_cols=127 Identities=22% Similarity=0.322 Sum_probs=95.7
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcc-cccCc--eeeEEEEEEEcCeEEEEEEcCCCCCch------hcHHHhhc--
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPT--IGFNVETVEYKNISFTVWDVGGQDKIR------PLWRHYFQ-- 83 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~-~~~~t--~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~-- 83 (153)
.+.++|+++|++|+|||||++++.+..+. ...++ .......+...+..+.+|||||++.+. .....+++
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 84 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINE 84 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhcc
Confidence 35689999999999999999999987643 33443 344556677778999999999998874 34555554
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC----CCHhHHHHHhCCCcc
Q 031796 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSL 148 (153)
Q Consensus 84 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~----~~~~~~~~~~~~~~~ 148 (153)
.+|++++|+|.++ +.....|+..+.. .+.|+++|+||+|+... ...+++++.++...+
T Consensus 85 ~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 146 (188)
T 2wjg_A 85 KPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVV 146 (188)
T ss_dssp CCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEE
T ss_pred CCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeE
Confidence 5999999999765 5555556655544 47899999999998653 357788888887655
No 109
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.87 E-value=1.2e-21 Score=128.93 Aligned_cols=122 Identities=20% Similarity=0.320 Sum_probs=84.9
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcc--cccC--ceeeEEEEEEEcCeEEEEEEcCCCCC-------chhcHHHhhcCCC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDK-------IRPLWRHYFQNTQ 86 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~~~ 86 (153)
.||+++|++|+|||||++++.+..+. ...+ +.......+...+..+.+|||||+.. +...+..+++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 58999999999999999999988743 2222 33344556667788999999999887 3445567789999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-CHhHHHHHhCC
Q 031796 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGL 145 (153)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-~~~~~~~~~~~ 145 (153)
++++|+|.++..+... .++...+.. .+.|+++|+||+|+.+.. ...+++ +++.
T Consensus 82 ~~i~v~d~~~~~~~~~--~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~-~~~~ 135 (161)
T 2dyk_A 82 VVLFAVDGRAELTQAD--YEVAEYLRR---KGKPVILVATKVDDPKHELYLGPLY-GLGF 135 (161)
T ss_dssp EEEEEEESSSCCCHHH--HHHHHHHHH---HTCCEEEEEECCCSGGGGGGCGGGG-GGSS
T ss_pred EEEEEEECCCcccHhH--HHHHHHHHh---cCCCEEEEEECcccccchHhHHHHH-hCCC
Confidence 9999999987544322 233333332 468999999999997652 233333 4454
No 110
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.86 E-value=3.7e-21 Score=136.73 Aligned_cols=128 Identities=18% Similarity=0.282 Sum_probs=96.6
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcc-cccC--ceeeEEEEEEEcCeEEEEEEcCCCCCchhc------HHHhh--c
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL------WRHYF--Q 83 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~ 83 (153)
.+.++|+++|++|||||||++++.+..+. ...| |.......+...+..+.+|||||+..+... ...++ +
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 45689999999999999999999987754 3334 444455566777899999999999877642 24454 5
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC----CCHhHHHHHhCCCccc
Q 031796 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLR 149 (153)
Q Consensus 84 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~----~~~~~~~~~~~~~~~~ 149 (153)
.+|++++|+|+++.++... ++..+.. .+.|+++|+||+|+... .+.+++++.+|.+.+.
T Consensus 83 ~~d~ii~V~D~t~~~~~~~---~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~ 145 (258)
T 3a1s_A 83 DADLVILVADSVNPEQSLY---LLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVF 145 (258)
T ss_dssp CCSEEEEEEETTSCHHHHH---HHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEE
T ss_pred CCCEEEEEeCCCchhhHHH---HHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEE
Confidence 8999999999998765433 4444433 36899999999998643 3467888999887653
No 111
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.86 E-value=1.9e-21 Score=130.17 Aligned_cols=116 Identities=20% Similarity=0.282 Sum_probs=83.7
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcc--cccC--ceeeEEEEEEEcCeEEEEEEcCCCCCchhc--------HHHhh
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYF 82 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~ 82 (153)
....+|+++|++|+|||||++++.+.... ...+ +.......+...+..+.+|||||++++... ...++
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 34589999999999999999999987642 2222 333444566677788999999998764221 12357
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 83 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
+++|++++|+|+++..++.. ..|+..+... ...++|+++|+||+|+.+
T Consensus 82 ~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~ 129 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVDP-AEIWPEFIAR-LPAKLPITVVRNKADITG 129 (172)
T ss_dssp HTCSEEEEEEETTTCCCCSH-HHHCHHHHHH-SCTTCCEEEEEECHHHHC
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHHh-cccCCCEEEEEECccCCc
Confidence 89999999999998887653 3455444332 224689999999999864
No 112
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.86 E-value=3.7e-21 Score=140.41 Aligned_cols=119 Identities=19% Similarity=0.288 Sum_probs=92.5
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCceeeEE-EEEEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~~~~~-~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
....++|+++|++|+|||||++++.++.+... .+|+.... ..+...+ +.+.+|||||++.+...+..+++++|+++
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 35669999999999999999999998877533 44444333 2334443 56779999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
+|||++++.++..+...|...+.... .+.|+++|+||+|+...
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 274 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccc
Confidence 99999999999988744433333221 37899999999999653
No 113
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.86 E-value=4e-21 Score=136.37 Aligned_cols=124 Identities=18% Similarity=0.225 Sum_probs=93.8
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcc-cccC--ceeeEEEEEEEcCeEEEEEEcCCCCCchh----------cHHHhh--
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP----------LWRHYF-- 82 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~~~-- 82 (153)
.+|+++|++|||||||+|++.+.+.. ...| |.......+...+..+.+|||||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 48999999999999999999988654 3334 44455666777888999999999987754 345566
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC----CCHhHHHHHhCCCcc
Q 031796 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSL 148 (153)
Q Consensus 83 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~----~~~~~~~~~~~~~~~ 148 (153)
+++|++++|+|+++.++...+..++. . .+.|+++|+||+|+... ...+.+++.+|.+.+
T Consensus 82 ~~~d~vi~VvDas~~~~~~~l~~~l~----~---~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi 144 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHLYLTSQLF----E---LGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVI 144 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHHHHHHHHT----T---SCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEE
T ss_pred CCCCEEEEEeeCCCchhHHHHHHHHH----H---cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEE
Confidence 88999999999988655544433322 2 36899999999998654 246678888887655
No 114
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.86 E-value=5.9e-21 Score=136.77 Aligned_cols=126 Identities=21% Similarity=0.265 Sum_probs=94.7
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCcc-cccC--ceeeEEEEEEEcCeEEEEEEcCCCCCchh----------cHHHhh
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP----------LWRHYF 82 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~~~ 82 (153)
++++|+++|++|+|||||+|++.+..+. ...+ |.......+...+..+.+|||||+.++.. ....++
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 4689999999999999999999998754 3333 44455566666778999999999887662 122232
Q ss_pred --cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC----CHhHHHHHhCCCcc
Q 031796 83 --QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSL 148 (153)
Q Consensus 83 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~----~~~~~~~~~~~~~~ 148 (153)
+++|++++|+|+++.++...+..++... ++|+++|+||+|+.... ..+.+++.+|.+.+
T Consensus 82 ~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~-------~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i 146 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLERNLYLTLQLLEL-------GIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVI 146 (274)
T ss_dssp HHTCCSEEEEEEEGGGHHHHHHHHHHHHHH-------TCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEE
T ss_pred hhcCCCEEEEEecCCChHHHHHHHHHHHhc-------CCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEE
Confidence 6899999999998866655554444432 68999999999987543 46778888887655
No 115
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.85 E-value=2.4e-22 Score=135.81 Aligned_cols=127 Identities=19% Similarity=0.284 Sum_probs=89.6
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEEEEEEcCeEEEEEEcCC-----------CCCchhcHHHhhcC-
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGG-----------QDKIRPLWRHYFQN- 84 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~~~~~- 84 (153)
+||+++|++|+|||||++++.+..+.. ..|+.......+... .+.+||||| ++.+...+..++++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 79 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence 689999999999999999999987653 344444444444444 789999999 55666677777776
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHH---------HHcCCCCCCceEEEEEeCCCccCCC--CHhHHHHHhCCC
Q 031796 85 TQGLIFVVDSNDRDRVVEARDELHR---------MLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLH 146 (153)
Q Consensus 85 ~~~~i~v~d~~~~~s~~~~~~~~~~---------~~~~~~~~~~pii~v~~K~Dl~~~~--~~~~~~~~~~~~ 146 (153)
++++++|+++.+..++......|.. ........+.|+++|+||+|+.... ..+++++.++..
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVP 152 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCC
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhh
Confidence 7766666666667777766333322 1111112478999999999998753 466788888875
No 116
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.85 E-value=2e-20 Score=130.39 Aligned_cols=117 Identities=14% Similarity=0.176 Sum_probs=83.7
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCccc-cc--CceeeEEEEEEEcCeEEEEEEcCCCC------Cc---hhcHHHhh
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TI--PTIGFNVETVEYKNISFTVWDVGGQD------KI---RPLWRHYF 82 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~--~t~~~~~~~~~~~~~~~~i~D~~g~~------~~---~~~~~~~~ 82 (153)
.+.++|+++|++|||||||++++.+..+.. .. .|..............+.+|||||+. .. ......++
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 106 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALA 106 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhh
Confidence 467999999999999999999999987652 22 24445555566678899999999983 31 11223456
Q ss_pred cCCCEEEEEEECCCcccHH--HHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 83 QNTQGLIFVVDSNDRDRVV--EARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 83 ~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
+.+|++++|+|+++..++. ....++..+... ..+.|+++|+||+|+...
T Consensus 107 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~ 157 (228)
T 2qu8_A 107 HINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNM 157 (228)
T ss_dssp TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC-
T ss_pred ccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCc
Confidence 7889999999999987764 233444444332 247899999999999764
No 117
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.85 E-value=1.9e-20 Score=127.31 Aligned_cols=133 Identities=20% Similarity=0.406 Sum_probs=100.9
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcc-cccCceeeEE--EEEEEcC--eEEEEEEcCCCCCchhcHHHhhcCCCEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (153)
...++++++|++|||||||++++.+..+. .+.+|.+.++ ..+...+ +.+.+||++|++++...+..+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 34589999999999999999999998765 3455555443 4455554 56678999999999998888999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-----CHhHHHHHhCCCcc
Q 031796 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|+|.++..++..+..|+..+... ...+.|+++++||+|+.+.. .+..++.+.++..+
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~l 169 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFI 169 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEE
Confidence 999999998888877776654321 22468999999999997532 24556666665444
No 118
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.85 E-value=2.8e-20 Score=134.85 Aligned_cols=125 Identities=18% Similarity=0.155 Sum_probs=89.1
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCcc--cccC--ceeeEEEEEEEcCeEEEEEEcCCCCC--------chhcHHHhhc
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDK--------IRPLWRHYFQ 83 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~ 83 (153)
+..+|+++|.+|+|||||+|++++.++. +..| |...........+.++.+|||||..+ +......+++
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~ 85 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA 85 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHh
Confidence 4568999999999999999999998764 2222 33333344556789999999999876 3445567789
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCC-HhHHHHHh
Q 031796 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKL 143 (153)
Q Consensus 84 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~-~~~~~~~~ 143 (153)
.+|++++|+|+++..+.. ..++...+.... .+.|+++|+||+|+..... ..+..+.+
T Consensus 86 ~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~ 143 (301)
T 1wf3_A 86 DVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEEAMKAYHEL 143 (301)
T ss_dssp SCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHHHHHHHHHT
T ss_pred cCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHHHHHHHHHh
Confidence 999999999998764443 345444444321 4789999999999976543 33444443
No 119
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.85 E-value=3.2e-20 Score=134.94 Aligned_cols=114 Identities=16% Similarity=0.137 Sum_probs=89.9
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCccc--cc--CceeeEEEEEEEc-CeEEEEEEcCCCCCch----------hcH
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT--TI--PTIGFNVETVEYK-NISFTVWDVGGQDKIR----------PLW 78 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~--~~--~t~~~~~~~~~~~-~~~~~i~D~~g~~~~~----------~~~ 78 (153)
....-.|+++|.+|+|||||+|++++.++.. .. .|........... +..+.+|||||..+.. ...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~ 86 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIA 86 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHH
Confidence 4556789999999999999999999988652 22 2344444556666 8999999999987654 456
Q ss_pred HHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031796 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 79 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~ 131 (153)
..+++.+|++++|+|+++..++.....|+..+.. .+.|+++|+||+|+.
T Consensus 87 ~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 87 KQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKI 135 (308)
T ss_dssp HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGS
T ss_pred HHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCC
Confidence 6778899999999999998888776665555433 468999999999997
No 120
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.84 E-value=9.7e-21 Score=128.52 Aligned_cols=116 Identities=16% Similarity=0.179 Sum_probs=79.0
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeE--EEEEEEcCeEEEEEEcCC----------CCCchhcHHH
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYKNISFTVWDVGG----------QDKIRPLWRH 80 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~--~~~~~~~~~~~~i~D~~g----------~~~~~~~~~~ 80 (153)
....++|+++|++|+|||||++++.+..+.. ..++.+.+ ...... +.++.+||||| ++.+...+..
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-NDELHFVDVPGYGFAKVSKSEREAWGRMIET 98 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TTTEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE-CCcEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence 3567999999999999999999999887432 22222211 122222 33799999999 5666777777
Q ss_pred hhcCC---CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCC
Q 031796 81 YFQNT---QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (153)
Q Consensus 81 ~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~ 135 (153)
+++.+ |++++|+|+++..++.... +...+.. .+.|+++|+||+|+.....
T Consensus 99 ~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~---~~~p~i~v~nK~Dl~~~~~ 151 (195)
T 1svi_A 99 YITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY---YGIPVIVIATKADKIPKGK 151 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH---TTCCEEEEEECGGGSCGGG
T ss_pred HHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH---cCCCEEEEEECcccCChHH
Confidence 77777 9999999999877776542 1222222 4689999999999987654
No 121
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.84 E-value=7.6e-21 Score=136.00 Aligned_cols=125 Identities=18% Similarity=0.289 Sum_probs=90.1
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCc-ccccCceee--EEEEEEEcCeEEEEEEcCCCCCch------hcHHHhhc--C
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGF--NVETVEYKNISFTVWDVGGQDKIR------PLWRHYFQ--N 84 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~-~~~~~t~~~--~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~--~ 84 (153)
..++|+++|++|||||||++++.+... ....|.... ....+.. +..+.+|||||+..+. .....++. +
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 80 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR 80 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence 357999999999999999999998753 344443333 2333333 6789999999998875 34555665 6
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC----CCHhHHHHHhCCCcc
Q 031796 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSL 148 (153)
Q Consensus 85 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~----~~~~~~~~~~~~~~~ 148 (153)
+|++++|+|+++.++.. .++..+.. .+.|+++|+||+|+... ...+.+++.+|.+.+
T Consensus 81 ~d~vi~V~D~t~~e~~~---~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi 141 (272)
T 3b1v_A 81 ADSILNVVDATNLERNL---YLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVV 141 (272)
T ss_dssp CSEEEEEEEGGGHHHHH---HHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEE
T ss_pred CCEEEEEecCCchHhHH---HHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEE
Confidence 99999999998765443 33333333 37899999999998643 356788888887655
No 122
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.84 E-value=7.5e-22 Score=140.04 Aligned_cols=120 Identities=12% Similarity=0.143 Sum_probs=85.5
Q ss_pred ccCccEEEEEcCC---------CCCHHHHHHhHhc---CCcc-cccCce-eeEEE------------------EEEEcCe
Q 031796 14 AKKEMRILMVGLD---------AAGKTTILYKLKL---GEIV-TTIPTI-GFNVE------------------TVEYKNI 61 (153)
Q Consensus 14 ~~~~~~i~v~G~~---------~~GKSsli~~~~~---~~~~-~~~~t~-~~~~~------------------~~~~~~~ 61 (153)
....+||+++|.+ |||||||++++.+ ..+. ...+|+ +.++. .++...+
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 3566999999999 9999999999998 4443 233433 22211 1234567
Q ss_pred EEEEEE-----------------------cCCCCCchhcHHHhhc---------------------CCCEEEEEEECCCc
Q 031796 62 SFTVWD-----------------------VGGQDKIRPLWRHYFQ---------------------NTQGLIFVVDSNDR 97 (153)
Q Consensus 62 ~~~i~D-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~v~d~~~~ 97 (153)
.+.+|| ++|++++...+..+++ ++|++++|||++++
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~ 175 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG 175 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence 899999 6677777777777776 79999999999998
Q ss_pred --ccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 98 --DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 98 --~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
++|..+..|+..+.......++|+++|+||+|+...
T Consensus 176 ~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~ 213 (255)
T 3c5h_A 176 MNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVE 213 (255)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCH
T ss_pred chhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccccc
Confidence 899999888877754322357999999999999754
No 123
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.84 E-value=2.8e-20 Score=132.41 Aligned_cols=116 Identities=12% Similarity=0.118 Sum_probs=81.2
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcc--cccC--ceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhc-------
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ------- 83 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~------- 83 (153)
.+.++|+++|.+|+|||||++++++.... ...+ |.......+...+..+.+|||||++++......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~ 113 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV 113 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence 36799999999999999999999988753 2222 444555667778899999999999877655444443
Q ss_pred --CCCEEEEEEECCCcccHHHHH-HHHHHHHcCC-CCCCceEEEEEeCCCcc
Q 031796 84 --NTQGLIFVVDSNDRDRVVEAR-DELHRMLNED-ELRDAVLLVFANKQDLP 131 (153)
Q Consensus 84 --~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~-~~~~~pii~v~~K~Dl~ 131 (153)
++|++++|++++... +.... .++..+.... .....|+++|+||+|+.
T Consensus 114 ~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 114 NRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp TCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred cCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 789999999987544 33322 2222222111 11124899999999995
No 124
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.83 E-value=8.5e-20 Score=128.91 Aligned_cols=120 Identities=17% Similarity=0.210 Sum_probs=82.4
Q ss_pred cccCccEEEEEcCCCCCHHHHHHhHhcCCcccc-----cCceeeEEEEEEEcCeEEEEEEcCCC--------CCchhcHH
Q 031796 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEYKNISFTVWDVGGQ--------DKIRPLWR 79 (153)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-----~~t~~~~~~~~~~~~~~~~i~D~~g~--------~~~~~~~~ 79 (153)
.....++|+++|.+|+|||||+|++++.+.... ..|...........+..+.+|||||. +.+.....
T Consensus 17 ~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~ 96 (247)
T 3lxw_A 17 QGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERG 96 (247)
T ss_dssp ---CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHH
T ss_pred cCCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHH
Confidence 346779999999999999999999998875421 13445556677788899999999996 33333333
Q ss_pred Hhh----cCCCEEEEEEECCCcccHH-HHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 80 HYF----QNTQGLIFVVDSNDRDRVV-EARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 80 ~~~----~~~~~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
.++ +.+|++++|+|+++..... ....++..... ....+.|+++++||+|+.+.
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~-~~~~~~~iilv~nK~Dl~~~ 154 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFG-EDVLKWMVIVFTRKEDLAGG 154 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHC-GGGGGGEEEEEECGGGGTTC
T ss_pred HHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhC-hhhhccEEEEEEchHhcCCC
Confidence 333 8999999999997533222 23334444322 22236899999999999764
No 125
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.83 E-value=8.1e-20 Score=130.57 Aligned_cols=127 Identities=21% Similarity=0.252 Sum_probs=94.9
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCcc-cccC--ceeeEEEEEEEcCeEEEEEEcCCCCCchh------cHHHhh--cC
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP------LWRHYF--QN 84 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~~ 84 (153)
+.++|+++|++|+|||||++++.+..+. ...+ |.......+...+..+.+|||||+..+.. ....++ .+
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 4589999999999999999999988764 2334 44445566777888999999999988765 455555 68
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccC----CCCHhHHHHHhCCCcc
Q 031796 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN----AMNAAEITDKLGLHSL 148 (153)
Q Consensus 85 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~----~~~~~~~~~~~~~~~~ 148 (153)
+|++++|+|+++.+ ....++...... ...|+++|+||+|+.. ......+++.+|.+.+
T Consensus 82 ~d~vi~v~D~~~~~---~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~ 143 (271)
T 3k53_A 82 ADVIVDIVDSTCLM---RNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVI 143 (271)
T ss_dssp CSEEEEEEEGGGHH---HHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEE
T ss_pred CcEEEEEecCCcch---hhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEE
Confidence 99999999998753 333444444443 2389999999999753 2357788888887765
No 126
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.83 E-value=2.5e-20 Score=126.16 Aligned_cols=115 Identities=18% Similarity=0.163 Sum_probs=80.8
Q ss_pred cccCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEE-EEEEcCeEEEEEEcCC----------CCCchhcHHHh
Q 031796 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-TVEYKNISFTVWDVGG----------QDKIRPLWRHY 81 (153)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~i~D~~g----------~~~~~~~~~~~ 81 (153)
.....++|+++|++|+|||||++++.+.......++.+.... .....+.++.+||||| ++.+...+..+
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDY 98 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHH
Confidence 345678999999999999999999999875444343332221 1122345788999999 55566667777
Q ss_pred hcCC---CEEEEEEECCCcccHH--HHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 82 FQNT---QGLIFVVDSNDRDRVV--EARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 82 ~~~~---~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
++.+ |++++|+|.++..+.. .+..++.. .+.|+++|+||+|+.++.
T Consensus 99 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~-------~~~p~i~v~nK~Dl~~~~ 149 (195)
T 3pqc_A 99 FKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS-------LNIPFTIVLTKMDKVKMS 149 (195)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCEEEEEECGGGSCGG
T ss_pred HhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH-------cCCCEEEEEEChhcCChH
Confidence 7766 9999999988754432 33333332 268999999999997654
No 127
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.82 E-value=4e-20 Score=143.34 Aligned_cols=116 Identities=23% Similarity=0.344 Sum_probs=84.2
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCccc-ccCceeeEEEEEE------------EcCeEEEEEEcCCCCCchhcHHH
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVE------------YKNISFTVWDVGGQDKIRPLWRH 80 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-~~~t~~~~~~~~~------------~~~~~~~i~D~~g~~~~~~~~~~ 80 (153)
..+.+||+++|.+|||||||++++.+..+.. ..+|.+..+.+.. .....+.+||+||++.+......
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 3566999999999999999999999988753 3566666665432 12589999999999999999999
Q ss_pred hhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 81 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
+++++|++++|+|+++.+.... |+..+.... .+.|+++|+||+|+....
T Consensus 118 ~l~~~d~ii~V~D~s~~~~~~~---~~~~l~~~~--~~~pvilV~NK~Dl~~~~ 166 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTDSNKHY---WLRHIEKYG--GKSPVIVVMNKIDENPSY 166 (535)
T ss_dssp HHHSSEEEEEEECGGGGGGHHH---HHHHHHHHS--SSCCEEEEECCTTTCTTC
T ss_pred HccCCcEEEEEEeCCCchhHHH---HHHHHHHhC--CCCCEEEEEECCCccccc
Confidence 9999999999999987655433 344332221 368999999999997643
No 128
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.81 E-value=3.5e-20 Score=128.34 Aligned_cols=116 Identities=19% Similarity=0.179 Sum_probs=79.8
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCc---ccccC--ceeeEEEEEE-EcCeEEEEEEcCCCCC----------chhc
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEI---VTTIP--TIGFNVETVE-YKNISFTVWDVGGQDK----------IRPL 77 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~---~~~~~--t~~~~~~~~~-~~~~~~~i~D~~g~~~----------~~~~ 77 (153)
....++|+++|.+|+|||||++++.+... ....+ |......... ..+..+.+|||||... +...
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 35678999999999999999999998862 22222 3333333333 3457899999999533 3455
Q ss_pred HHHhhcC---CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 78 WRHYFQN---TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 78 ~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
...+++. +|++++|+|+++..+ .....+...+.. .+.|+++|+||+|+....
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~--~~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~ 160 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLT--ELDRRMIEWFAP---TGKPIHSLLTKCDKLTRQ 160 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCC--HHHHHHHHHHGG---GCCCEEEEEECGGGSCHH
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCC--HHHHHHHHHHHh---cCCCEEEEEeccccCChh
Confidence 5566665 778999999987533 222333333333 468999999999997644
No 129
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.81 E-value=1.4e-19 Score=132.49 Aligned_cols=86 Identities=31% Similarity=0.515 Sum_probs=78.3
Q ss_pred CceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECC----------CcccHHHHHHHHHHHHcCCCC
Q 031796 47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRDRVVEARDELHRMLNEDEL 116 (153)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~ 116 (153)
+|+++....+....+++.+||++|+++++..|..++++++++|+|+|++ +.+++.+...++..++.....
T Consensus 147 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~ 226 (340)
T 4fid_A 147 KTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL 226 (340)
T ss_dssp CCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred ceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence 4677777888888999999999999999999999999999999999998 778999999999999887777
Q ss_pred CCceEEEEEeCCCccC
Q 031796 117 RDAVLLVFANKQDLPN 132 (153)
Q Consensus 117 ~~~pii~v~~K~Dl~~ 132 (153)
.+.|+++++||+|+..
T Consensus 227 ~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 227 KGAVKLIFLNKMDLFE 242 (340)
T ss_dssp TTSEEEEEEECHHHHH
T ss_pred CCCeEEEEEECchhhh
Confidence 7899999999999864
No 130
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.80 E-value=4.7e-19 Score=129.28 Aligned_cols=86 Identities=27% Similarity=0.539 Sum_probs=77.2
Q ss_pred CceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECC----------CcccHHHHHHHHHHHHcCCCC
Q 031796 47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRDRVVEARDELHRMLNEDEL 116 (153)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~ 116 (153)
||+++....++...+++.+||++|+++++..|..++++++++++|+|++ +.+++.+...++..+......
T Consensus 153 ~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~ 232 (327)
T 3ohm_A 153 PTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 232 (327)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred ceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence 5677778888889999999999999999999999999999999999654 677899999999999887777
Q ss_pred CCceEEEEEeCCCccC
Q 031796 117 RDAVLLVFANKQDLPN 132 (153)
Q Consensus 117 ~~~pii~v~~K~Dl~~ 132 (153)
.+.|+++++||+|+..
T Consensus 233 ~~~~iiL~~NK~DL~~ 248 (327)
T 3ohm_A 233 QNSSVILFLNKKDLLE 248 (327)
T ss_dssp TTCEEEEEEECHHHHH
T ss_pred CCceEEEEEECchhhh
Confidence 7899999999999864
No 131
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.80 E-value=1.8e-19 Score=126.50 Aligned_cols=118 Identities=17% Similarity=0.211 Sum_probs=79.0
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCcccc-c----CceeeEEEEEEEcCeEEEEEEcCCCCC-----------chhc
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-I----PTIGFNVETVEYKNISFTVWDVGGQDK-----------IRPL 77 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~----~t~~~~~~~~~~~~~~~~i~D~~g~~~-----------~~~~ 77 (153)
....++|+++|++|+|||||++++++..+... . .|...........+..+.+|||||... +...
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~ 105 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRC 105 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence 35679999999999999999999998876422 2 244445566777889999999999542 3344
Q ss_pred HHHhhcCCCEEEEEEECCCcccHH-HHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 78 WRHYFQNTQGLIFVVDSNDRDRVV-EARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 78 ~~~~~~~~~~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
....++.+|++++|+|+++..... ....++....... ...|+++|+||+|+...
T Consensus 106 ~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~ 160 (239)
T 3lxx_A 106 ILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGD 160 (239)
T ss_dssp HHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC--
T ss_pred HHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCc
Confidence 445566789999999987654421 2222222222111 23589999999998654
No 132
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.79 E-value=2.3e-19 Score=137.03 Aligned_cols=115 Identities=22% Similarity=0.235 Sum_probs=72.2
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCc--ccccC--ceeeEEEEEEEcCeEEEEEEcCCCCCchhcH--------HHhh
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLW--------RHYF 82 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~~ 82 (153)
++.++|+++|.+|+|||||+|++.+... ....+ |.......+...+..+.+|||||+.++...+ ..++
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 4568999999999999999999998753 33333 3334446677788999999999988765443 3367
Q ss_pred cCCCEEEEEEECCCcccHHH---HHHHHHHHHcCCCCCCceEEEEEeCCCccCCCC
Q 031796 83 QNTQGLIFVVDSNDRDRVVE---ARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (153)
Q Consensus 83 ~~~~~~i~v~d~~~~~s~~~---~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~ 135 (153)
+++|++++|+|++++.++.. ...++..+ .+.|+++|+||+|+.....
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l------~~~piIvV~NK~Dl~~~~~ 360 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIRELKAAH------PAAKFLTVANKLDRAANAD 360 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHHHHHHHC------TTSEEEEEEECTTSCTTTH
T ss_pred ccCCEEEEEEECCCCcchhhhHHHHHHHHhc------CCCCEEEEEECcCCCCccc
Confidence 89999999999999877753 33333322 2689999999999986653
No 133
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.79 E-value=6e-19 Score=130.21 Aligned_cols=85 Identities=31% Similarity=0.559 Sum_probs=76.1
Q ss_pred CceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCC----------cccHHHHHHHHHHHHcCCCC
Q 031796 47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RDRVVEARDELHRMLNEDEL 116 (153)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~ 116 (153)
+|+++....+....+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+......
T Consensus 179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred ceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 45666677778888999999999999999999999999999999999998 56799999999999887666
Q ss_pred CCceEEEEEeCCCcc
Q 031796 117 RDAVLLVFANKQDLP 131 (153)
Q Consensus 117 ~~~pii~v~~K~Dl~ 131 (153)
.+.|+++++||+|+.
T Consensus 259 ~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 259 TDTSIILFLNKKDLF 273 (353)
T ss_dssp TTSEEEEEEECHHHH
T ss_pred cCCcEEEEEECcCch
Confidence 789999999999985
No 134
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.79 E-value=1.2e-18 Score=132.26 Aligned_cols=111 Identities=22% Similarity=0.251 Sum_probs=78.3
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcc--cccC--ceeeEEEEEEEcCeEEEEEEcCCCCCc---------hhcHHHhhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKI---------RPLWRHYFQN 84 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~~~ 84 (153)
.+|+++|.+|||||||+|++.+.+.. ...| |.......+.+.+..+.+|||||.+.. ...+..++++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 47999999999999999999988743 3333 444556677788899999999997752 3446678899
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 85 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
+|++++|+|+++..+... .++...++. .+.|+++|+||+|+...
T Consensus 82 ad~il~V~D~~~~~~~~d--~~i~~~l~~---~~~p~ilv~NK~D~~~~ 125 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKED--ESLADFLRK---STVDTILVANKAENLRE 125 (439)
T ss_dssp CSEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCEEEEEESCCSHHH
T ss_pred CCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEeCCCCccc
Confidence 999999999987544432 223333332 36899999999998643
No 135
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.78 E-value=4.1e-18 Score=120.83 Aligned_cols=119 Identities=15% Similarity=0.205 Sum_probs=78.8
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCC-cccc-c---CceeeEEEEEEEcCeEEEEEEcCCCCCchhc-----------
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGE-IVTT-I---PTIGFNVETVEYKNISFTVWDVGGQDKIRPL----------- 77 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~-~~~~-~---~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------- 77 (153)
..+.++|+++|.+|+|||||++++++.. +... . .|...........+..+.+|||||...+...
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999999876 3322 2 3444555667778899999999997655322
Q ss_pred HHHhhcCCCEEEEEEECCCcccHH-HHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 78 WRHYFQNTQGLIFVVDSNDRDRVV-EARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 78 ~~~~~~~~~~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
....++.+|++++|+|+++..... .+..++...... .....+++++.||+|+...
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~-~~~~~~i~vv~nK~Dl~~~ 154 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE-DAMGHTIVLFTHKEDLNGG 154 (260)
T ss_dssp HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG-GGGGGEEEEEECGGGGTTC
T ss_pred HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc-hhhccEEEEEEcccccCCc
Confidence 223678899999999998633322 233444443321 1123445555559999854
No 136
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.78 E-value=1.9e-19 Score=135.64 Aligned_cols=128 Identities=20% Similarity=0.211 Sum_probs=85.6
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCcc--ccc--CceeeEEEEEEEcCe-EEEEEEcCCCCCchhc-------HHHh
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV--TTI--PTIGFNVETVEYKNI-SFTVWDVGGQDKIRPL-------WRHY 81 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~--~~~--~t~~~~~~~~~~~~~-~~~i~D~~g~~~~~~~-------~~~~ 81 (153)
....++|+++|..++|||||++++.+..+. ... .|.......+..... .+.+|||||++++... ...+
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHH
Confidence 456789999999999999999999988753 222 244555566666654 9999999999877543 4557
Q ss_pred hcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCH---hHHHHHhCCCcc
Q 031796 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSL 148 (153)
Q Consensus 82 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~---~~~~~~~~~~~~ 148 (153)
++++|++++|+|++..+.. ..|+..+... +.|+++|+||+|+..+... +++++.++.+.+
T Consensus 111 l~~aD~vllVvD~~~~~~~---~~~l~~l~~~----~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~ 173 (423)
T 3qq5_A 111 FYRADCGILVTDSAPTPYE---DDVVNLFKEM----EIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVL 173 (423)
T ss_dssp HTSCSEEEEECSSSCCHHH---HHHHHHHHHT----TCCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCC
T ss_pred HhcCCEEEEEEeCCChHHH---HHHHHHHHhc----CCCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEE
Confidence 8899999999998433333 3333333222 7899999999999876543 333334444443
No 137
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.78 E-value=1e-18 Score=124.76 Aligned_cols=118 Identities=11% Similarity=0.060 Sum_probs=78.5
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccc--cC--ceeeEEEEEEEcCeEEEEEEcCCCCCchhcHH-------Hh--
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLWR-------HY-- 81 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~--~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-------~~-- 81 (153)
...++|+++|.+|+|||||++++++..+... .+ |.......+...+..+.+|||||..++..... .+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 3579999999999999999999998875321 11 22333445667788999999999876643221 11
Q ss_pred hcCCCEEEEEEECCCcccHHHHH-HHHHHHHcCCC-CCCceEEEEEeCCCccCC
Q 031796 82 FQNTQGLIFVVDSNDRDRVVEAR-DELHRMLNEDE-LRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 82 ~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~-~~~~pii~v~~K~Dl~~~ 133 (153)
.+.+|++++|+|++.. ++.... .++..+..... ....|+++|+||+|+...
T Consensus 117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 2478999999998653 343332 33333221100 012699999999998643
No 138
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.78 E-value=3.5e-19 Score=135.03 Aligned_cols=112 Identities=23% Similarity=0.347 Sum_probs=77.3
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCCccccc--C--ceeeEEEEEEEcCeEEEEEEcCCCC--------CchhcHHHhhcC
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTI--P--TIGFNVETVEYKNISFTVWDVGGQD--------KIRPLWRHYFQN 84 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~~~~~~--~--t~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~~ 84 (153)
..+|+++|.+|||||||+|++.+.++.... + |....+....+.+..+.+|||||++ .+...+..++++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 368999999999999999999987654222 2 3333444555567889999999986 456667788899
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 85 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
+|++++|+|+++..++.. .++...+.+ .+.|+++|+||+|+...
T Consensus 83 ad~il~vvD~~~~~~~~d--~~~~~~l~~---~~~pvilv~NK~D~~~~ 126 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAAD--EEVAKILYR---TKKPVVLAVNKLDNTEM 126 (436)
T ss_dssp CSEEEEEEETTTCSCHHH--HHHHHHHTT---CCSCEEEEEECCCC---
T ss_pred CCEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCccc
Confidence 999999999987666543 455665554 47899999999998753
No 139
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.78 E-value=9.8e-19 Score=128.63 Aligned_cols=127 Identities=24% Similarity=0.322 Sum_probs=91.7
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcc-cc--cCceeeEEEEEEEcC-eEEEEEEcCCC----CCchhcHHHh---hcCCC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKN-ISFTVWDVGGQ----DKIRPLWRHY---FQNTQ 86 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~-~~--~~t~~~~~~~~~~~~-~~~~i~D~~g~----~~~~~~~~~~---~~~~~ 86 (153)
.+|+++|.+++|||||++++.+.+.. .. ..|...+...+...+ ..+.+|||||. ..+..+...+ +++++
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 36889999999999999999887632 22 234555556666664 78999999994 3344444444 44599
Q ss_pred EEEEEEECCC---cccHHHHHHHHHHHHcCC-CCCCceEEEEEeCCCccCCC-CHhHHHHHhC
Q 031796 87 GLIFVVDSND---RDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAM-NAAEITDKLG 144 (153)
Q Consensus 87 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~-~~~~~pii~v~~K~Dl~~~~-~~~~~~~~~~ 144 (153)
++++|+|+++ .+++.....++..+.... ...+.|+++|+||+|+.... ..+++++.++
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~ 301 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLT 301 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCC
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhh
Confidence 9999999998 678888777666654432 23579999999999997643 2455666655
No 140
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.77 E-value=1.1e-18 Score=132.28 Aligned_cols=114 Identities=15% Similarity=0.199 Sum_probs=83.1
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCcc--cccC--ceeeEEEEEEEcCeEEEEEEcCCC----------CCchhcHH-H
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQ----------DKIRPLWR-H 80 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~~-~ 80 (153)
..+|++++|.+|+|||||+|++++..+. ...+ |.......+...+..+.+|||||+ +.|..... .
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 4589999999999999999999988753 3333 333333456677888999999997 33443333 4
Q ss_pred hhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 81 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
+++++|++++|+|+++..++... .++..+.. .+.|+++|+||+|+.+..
T Consensus 254 ~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~ 302 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKD 302 (436)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCC
T ss_pred HHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcc
Confidence 78899999999999998877664 34433332 478999999999998654
No 141
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.77 E-value=1.7e-18 Score=130.09 Aligned_cols=119 Identities=18% Similarity=0.104 Sum_probs=84.4
Q ss_pred cccCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEE-----------------------EEEEEcCeEEEEEEcC
Q 031796 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV-----------------------ETVEYKNISFTVWDVG 69 (153)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~-----------------------~~~~~~~~~~~i~D~~ 69 (153)
..+..++|+++|..++|||||++++.+.............. .........+.+||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 34677999999999999999999998753221100000000 0001112689999999
Q ss_pred CCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 70 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
|+++|.......++.+|++++|+|+++..++.....++...... ...|+++|+||+|+.+..
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~ 145 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKE 145 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHH
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchH
Confidence 99999999999999999999999999876565555555443222 235899999999998654
No 142
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.77 E-value=1.4e-18 Score=132.82 Aligned_cols=120 Identities=26% Similarity=0.382 Sum_probs=89.9
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCc--ccccC--ceeeEEEEEEEcCeEEEEEEcCCCC-Cchh--------cHHHhh
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQD-KIRP--------LWRHYF 82 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~-~~~~--------~~~~~~ 82 (153)
..++|+++|.+|+|||||+|++.+... ....+ |.......+...+..+.+|||||.. ++.. ....++
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 348999999999999999999998753 33333 4445556777788999999999987 6542 235678
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHHHH
Q 031796 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDK 142 (153)
Q Consensus 83 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~~~ 142 (153)
+++|++++|+|++++.++.... .+ ..+ .+.|+++|+||+|+......+++.+.
T Consensus 322 ~~aD~vl~VvD~s~~~s~~~~~-il-~~l-----~~~piivV~NK~DL~~~~~~~~~~~~ 374 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLDEEDRK-IL-ERI-----KNKRYLVVINKVDVVEKINEEEIKNK 374 (482)
T ss_dssp HHCSEEEEEEETTSCCCHHHHH-HH-HHH-----TTSSEEEEEEECSSCCCCCHHHHHHH
T ss_pred hcccEEEEEecCCCCCCHHHHH-HH-HHh-----cCCCEEEEEECcccccccCHHHHHHH
Confidence 8999999999999887775532 22 222 26799999999999866555555443
No 143
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.77 E-value=7.3e-18 Score=130.22 Aligned_cols=126 Identities=18% Similarity=0.159 Sum_probs=95.4
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcC------------------Cccc-------ccCceeeEEEEEEEcCeEEEEEEcC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLG------------------EIVT-------TIPTIGFNVETVEYKNISFTVWDVG 69 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~------------------~~~~-------~~~t~~~~~~~~~~~~~~~~i~D~~ 69 (153)
.+..+|+++|.+++|||||+++++.. .... ...|.......+.+.+..+.+||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 45689999999999999999999621 1111 1124455566778889999999999
Q ss_pred CCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCC---HhHHHHHhCC
Q 031796 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGL 145 (153)
Q Consensus 70 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~---~~~~~~~~~~ 145 (153)
|+.+|...+..+++.+|++++|+|+++..+......| ..... .++|+++|+||+|+..... .+++.+.++.
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~----~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~~ 164 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL----RHTPIMTFINKMDRDTRPSIELLDEIESILRI 164 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT----TTCCEEEEEECTTSCCSCHHHHHHHHHHHHCC
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH----cCCCEEEEEeCCCCccccHHHHHHHHHHhhCC
Confidence 9999999999999999999999999987666554433 33322 3689999999999976542 4556666665
No 144
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.76 E-value=2.1e-17 Score=122.29 Aligned_cols=118 Identities=19% Similarity=0.212 Sum_probs=87.9
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcc-cc--cCceeeEEEEEEEcCeEEEEEEcCCCCCch---------hcHHHhh
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKNISFTVWDVGGQDKIR---------PLWRHYF 82 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~-~~--~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~ 82 (153)
...++++++|.+|+|||||++++.+.... .. ..|.......+...+..+.+|||||..... .......
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 46689999999999999999999987643 11 235555566666678899999999975432 1222344
Q ss_pred cCCCEEEEEEECCCcc--cHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 83 QNTQGLIFVVDSNDRD--RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 83 ~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
..+|++++|+|+++.. ++.....++..+.... .+.|+++|+||+|+....
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~ 296 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEE 296 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHH
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChH
Confidence 5799999999998877 6777777776665432 268999999999997653
No 145
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.75 E-value=3.4e-18 Score=123.93 Aligned_cols=112 Identities=21% Similarity=0.132 Sum_probs=81.3
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCccc--ccC--ceeeEEEEEEEcCeEEEEEEcCCCC-C--------chhcHHHh
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVEYKNISFTVWDVGGQD-K--------IRPLWRHY 81 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~--~~~--t~~~~~~~~~~~~~~~~i~D~~g~~-~--------~~~~~~~~ 81 (153)
.+..+++++|++|+|||||++++.+.++.. ..+ |.......+......+.+|||||.. . +.......
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 345689999999999999999999987642 222 3333344566678899999999987 2 23334556
Q ss_pred hcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 82 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
++.+|++++|+|.++ +.....++...+.. .+.|+++++||+|+..
T Consensus 86 l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 86 IGDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQ 130 (301)
T ss_dssp CCCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCC
T ss_pred HhcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCc
Confidence 778999999999976 33333455544443 4689999999999986
No 146
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.75 E-value=8.2e-18 Score=130.02 Aligned_cols=127 Identities=21% Similarity=0.206 Sum_probs=90.9
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCC--cc----------------c---cc----CceeeEEEEEEEcCeEEEEEEcC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGE--IV----------------T---TI----PTIGFNVETVEYKNISFTVWDVG 69 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~--~~----------------~---~~----~t~~~~~~~~~~~~~~~~i~D~~ 69 (153)
.+.++|+++|.+++|||||+++++... +. . .. .|.......+.+.+..+.+||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 456899999999999999999998631 10 0 00 12222334567788999999999
Q ss_pred CCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCC---HhHHHHHhCCC
Q 031796 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLH 146 (153)
Q Consensus 70 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~---~~~~~~~~~~~ 146 (153)
|+++|......+++.+|++++|+|+++..... ....+.. ... .++|+++++||+|+..... .+++.+.++..
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~-~~~---~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~~ 165 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEV-TRL---RDTPILTFMNKLDRDIRDPMELLDEVENELKIG 165 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHH-HTT---TTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCE
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHH-HHH---cCCCEEEEEcCcCCccccHHHHHHHHHHHhCCC
Confidence 99999888888999999999999998754322 1222222 222 4789999999999987643 45666666653
No 147
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.75 E-value=5e-19 Score=134.86 Aligned_cols=115 Identities=23% Similarity=0.308 Sum_probs=80.2
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCcccccC----ceeeEEEEEEEcCeEEEEEEcCC--------CCCchhcHHHh
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP----TIGFNVETVEYKNISFTVWDVGG--------QDKIRPLWRHY 81 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~D~~g--------~~~~~~~~~~~ 81 (153)
.....+|+++|.+|||||||+|++.+.++....+ |...........+..+.+||||| ++++......+
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA 99 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 3556899999999999999999999876542222 23333444445668999999999 55667777888
Q ss_pred hcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 82 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
++++|++++|+|..+. +.....++...+.+ .+.|+++|+||+|+...
T Consensus 100 ~~~ad~il~VvD~~~~--~~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~ 146 (456)
T 4dcu_A 100 MDEADVIIFMVNGREG--VTAADEEVAKILYR---TKKPVVLAVNKLDNTEM 146 (456)
T ss_dssp HHHCSEEEEEEESSSC--SCHHHHHHHHHHTT---CCSCEEEEEECC-----
T ss_pred HhhCCEEEEEEeCCCC--CChHHHHHHHHHHH---cCCCEEEEEECccchhh
Confidence 9999999999998653 43445566666665 57899999999998753
No 148
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.74 E-value=4.4e-18 Score=125.61 Aligned_cols=74 Identities=24% Similarity=0.538 Sum_probs=65.4
Q ss_pred cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECC----------CcccHHHHHHHHHHHHcCCCCCCceEEEEEeCC
Q 031796 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128 (153)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~ 128 (153)
..+++.+|||+|+++++..+..++++++++++|||++ +.+++.+...|+..+.......+.|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 3578999999999999999999999999999999998 788999999999998876655789999999999
Q ss_pred CccC
Q 031796 129 DLPN 132 (153)
Q Consensus 129 Dl~~ 132 (153)
|+..
T Consensus 261 DL~~ 264 (354)
T 2xtz_A 261 DIFE 264 (354)
T ss_dssp HHHH
T ss_pred chhh
Confidence 9853
No 149
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.74 E-value=1.2e-18 Score=133.50 Aligned_cols=117 Identities=18% Similarity=0.138 Sum_probs=82.8
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCc--cc--------------------------------ccCceeeEEEEEEEc
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEI--VT--------------------------------TIPTIGFNVETVEYK 59 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~--~~--------------------------------~~~t~~~~~~~~~~~ 59 (153)
.+..+||+++|.+++|||||++++++... .. ...|.......++..
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 46679999999999999999999975411 00 012444455566777
Q ss_pred CeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcccHHH-----HHHHHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVE-----ARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
...+.+|||||+++|.......++.+|++++|+|+++..++.. ...+........ ...|+++|+||+|+.+
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~ 185 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVD 185 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGT
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCccc
Confidence 8899999999999999999999999999999999988643321 111222222211 2356999999999986
No 150
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.74 E-value=2.7e-17 Score=124.63 Aligned_cols=122 Identities=18% Similarity=0.090 Sum_probs=83.8
Q ss_pred HHhhhcccCccEEEEEcCCCCCHHHHHHhHhcCCc---ccc---------------------------------cCceee
Q 031796 8 LFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEI---VTT---------------------------------IPTIGF 51 (153)
Q Consensus 8 ~~~~~~~~~~~~i~v~G~~~~GKSsli~~~~~~~~---~~~---------------------------------~~t~~~ 51 (153)
++.+...+..++++++|..++|||||++++++... ... ..|...
T Consensus 15 ~l~~~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~ 94 (434)
T 1zun_B 15 YLGQHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDV 94 (434)
T ss_dssp -CCSTTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCC
T ss_pred HHhhcccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEe
Confidence 33343345568999999999999999999975431 000 012223
Q ss_pred EEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031796 52 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 52 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~ 131 (153)
.+..+......+.+|||||+++|.......++.+|++++|+|+++..... ...++...... ...|+++|+||+|+.
T Consensus 95 ~~~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~~---~~~~iIvviNK~Dl~ 170 (434)
T 1zun_B 95 AYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLL---GIKHIVVAINKMDLN 170 (434)
T ss_dssp EEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHT---TCCEEEEEEECTTTT
T ss_pred eeeEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCeEEEEEEcCcCC
Confidence 33445556789999999999999888888899999999999998754322 22222222111 124699999999998
Q ss_pred CC
Q 031796 132 NA 133 (153)
Q Consensus 132 ~~ 133 (153)
+.
T Consensus 171 ~~ 172 (434)
T 1zun_B 171 GF 172 (434)
T ss_dssp TS
T ss_pred cc
Confidence 63
No 151
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.74 E-value=5.3e-18 Score=129.18 Aligned_cols=115 Identities=16% Similarity=0.252 Sum_probs=82.4
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcc--cccCce--eeEEEEEEEcCeEEEEEEcCC----------CCCchhcHH-
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTI--GFNVETVEYKNISFTVWDVGG----------QDKIRPLWR- 79 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~--~~~~t~--~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~~- 79 (153)
...++++++|.+++|||||++++.+.... ...+++ ......+...+.++.+||||| ++.|.....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 35689999999999999999999977532 333322 233356677788999999999 666666544
Q ss_pred HhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 80 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
.+++++|++++|+|+++..+ +...++...+.. .+.|+++|+||+|+....
T Consensus 273 ~~~~~ad~~llviD~~~~~~--~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~ 322 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGII--EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKD 322 (456)
T ss_dssp HHHHHCSEEEEEEETTTCCC--HHHHHHHHHHHH---TTCEEEEEEECGGGSCCC
T ss_pred HHHhhCCEEEEEEeCCCCcC--HHHHHHHHHHHH---cCCCEEEEEEChhcCCCc
Confidence 47889999999999987433 233333433333 468999999999997643
No 152
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.74 E-value=6.5e-18 Score=128.04 Aligned_cols=114 Identities=21% Similarity=0.213 Sum_probs=81.2
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcC--Cccc--------------------------------ccCceeeEEEEEEEcC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLG--EIVT--------------------------------TIPTIGFNVETVEYKN 60 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~--~~~~--------------------------------~~~t~~~~~~~~~~~~ 60 (153)
+..++++++|..++|||||+++++.. .+.. ...|+......++...
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 45689999999999999999999764 2210 1124444455667778
Q ss_pred eEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHH-------HHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD-------ELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~-------~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
..+.+|||||+++|.......++.+|++++|+|+++ .+|..... .+...... ...|+++++||+|+.+
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM---GLDQLIVAVNKMDLTE 158 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT---TCTTCEEEEECGGGSS
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc---CCCeEEEEEEcccCCC
Confidence 899999999999999888889999999999999998 66654322 22111111 1246899999999986
No 153
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.74 E-value=3e-18 Score=134.42 Aligned_cols=116 Identities=17% Similarity=0.154 Sum_probs=83.4
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcc--c--------------------------------ccCceeeEEEEEEEcC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--T--------------------------------TIPTIGFNVETVEYKN 60 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~--~--------------------------------~~~t~~~~~~~~~~~~ 60 (153)
+..+||+++|.+++|||||++++++.... . ...|.......+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 55799999999999999999999865321 0 1124445556677788
Q ss_pred eEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcc---cH--HHHHHHHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RV--VEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~--~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
..+.+|||||+++|.......++.+|++|+|+|+++.. ++ .............. ...|+|+|+||+|+.+
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l--gi~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVD 319 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT--TCCEEEEEEECTTTTT
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc--CCCeEEEEEecccccc
Confidence 89999999999999988888999999999999998631 11 01111111122221 2346999999999986
No 154
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.74 E-value=2.3e-17 Score=118.05 Aligned_cols=114 Identities=19% Similarity=0.311 Sum_probs=73.4
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCcc-cc--------cCceeeEEEEEEEc----CeEEEEEEcCCCCC-------ch
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TT--------IPTIGFNVETVEYK----NISFTVWDVGGQDK-------IR 75 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~-~~--------~~t~~~~~~~~~~~----~~~~~i~D~~g~~~-------~~ 75 (153)
..++|+++|.+|+|||||+|++++.... .. .+|...+....... .+++.+|||||... +.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 4689999999999999999998776533 21 45555555544432 25999999999732 33
Q ss_pred hcH-------HHhhcC-------------CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 76 PLW-------RHYFQN-------------TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 76 ~~~-------~~~~~~-------------~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
... ..+++. +|+++++++.+... +......+...+.. +.|+++|+||+|+....
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~-~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG-LKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSS-CCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCC-CCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence 332 333333 78999999876532 22222333333333 68999999999987543
No 155
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.73 E-value=5.8e-17 Score=122.94 Aligned_cols=115 Identities=19% Similarity=0.208 Sum_probs=82.9
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCc--cc--------------------------------ccCceeeEEEEEEEc
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEI--VT--------------------------------TIPTIGFNVETVEYK 59 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~--~~--------------------------------~~~t~~~~~~~~~~~ 59 (153)
.+..++++++|..++|||||+++++...- .. ...|+......++..
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 35669999999999999999999954310 00 112455555667777
Q ss_pred CeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCccc---HH---HHHHHHHHHHcCCCCCCce-EEEEEeCCCccC
Q 031796 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR---VV---EARDELHRMLNEDELRDAV-LLVFANKQDLPN 132 (153)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-ii~v~~K~Dl~~ 132 (153)
+..+.+|||||+++|.......++.+|++++|+|+++... |. .....+... .. .++| +++++||+|+..
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~-~~---~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLA-KT---AGVKHLIVLINKMDDPT 169 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHH-HH---cCCCeEEEEeecCCCcc
Confidence 8899999999999998888888999999999999987532 11 111222221 11 2455 999999999964
No 156
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.73 E-value=2.8e-17 Score=128.42 Aligned_cols=126 Identities=21% Similarity=0.228 Sum_probs=86.2
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCC--cc---------cc---c----CceeeEEEEEEEc-----CeEEEEEEcCCCC
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGE--IV---------TT---I----PTIGFNVETVEYK-----NISFTVWDVGGQD 72 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~--~~---------~~---~----~t~~~~~~~~~~~-----~~~~~i~D~~g~~ 72 (153)
+.+|++++|+.++|||||+++++... +. .. . .|+......+.+. .+.+++|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 45799999999999999999997621 10 00 1 1222222344443 3789999999999
Q ss_pred CchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCC---HhHHHHHhCCC
Q 031796 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLH 146 (153)
Q Consensus 73 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~---~~~~~~~~~~~ 146 (153)
+|...+...++.+|++++|+|+++..++.....|.... . .++|+++|+||+|+.++.. .+++++.+++.
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~-~----~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~ 154 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM-E----MDLEVVPVLNKIDLPAADPERVAEEIEDIVGID 154 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH-H----TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEeeeccCcccccHHHHHHHHHHHhCCC
Confidence 99999999999999999999999877776666555443 2 3689999999999987542 34566666653
No 157
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.73 E-value=2.6e-17 Score=123.66 Aligned_cols=113 Identities=21% Similarity=0.193 Sum_probs=84.1
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcC--------Cccc------------ccCceeeEEEEEEEcCeEEEEEEcCCCCCc
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLG--------EIVT------------TIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~--------~~~~------------~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (153)
+..++|+++|..++|||||++++.+. .+.. ...|.......+......+.+|||||+++|
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 56699999999999999999999872 1110 112333444455566789999999999999
Q ss_pred hhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCce-EEEEEeCCCccC
Q 031796 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPN 132 (153)
Q Consensus 75 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-ii~v~~K~Dl~~ 132 (153)
.......++.+|++++|+|+++.... ....++..... .++| +++++||+|+..
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~----~~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ----VGVPYIVVFMNKVDMVD 142 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHH----TTCCCEEEEEECGGGCC
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCEEEEEEECccccC
Confidence 88888889999999999999876443 33334433322 2577 899999999985
No 158
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.73 E-value=5.9e-18 Score=128.88 Aligned_cols=112 Identities=16% Similarity=0.247 Sum_probs=74.2
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCc--ccccCc--eeeEEEEEEEcCeEEEEEEcCCCCCchhcHH--------Hhh
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIPT--IGFNVETVEYKNISFTVWDVGGQDKIRPLWR--------HYF 82 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~--~~~~~t--~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~--------~~~ 82 (153)
+..++|+++|++|+|||||+|++.+..+ ....++ .......+...+..+.+|||||..++..... ..+
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 3568999999999999999999988653 233332 3333356677889999999999866544332 357
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 83 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
+.+|++++|+|.+++.+... ..++..+ . ..|+++|+||+|+...
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l-~-----~~piivV~NK~Dl~~~ 345 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD-QEIYEQV-K-----HRPLILVMNKIDLVEK 345 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH-HHHHHHH-T-----TSCEEEEEECTTSSCG
T ss_pred hcCCEEEEEeccCCCCCHHH-HHHHHhc-c-----CCcEEEEEECCCCCcc
Confidence 88999999999998766544 2333332 2 3699999999999754
No 159
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.73 E-value=8.2e-18 Score=130.60 Aligned_cols=123 Identities=18% Similarity=0.228 Sum_probs=83.9
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcc----cccCceeeEEEEEEE--------------------------------
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVETVEY-------------------------------- 58 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~----~~~~t~~~~~~~~~~-------------------------------- 58 (153)
....+|+++|.+|+|||||+|++++.++. ...|++.........
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 35689999999999999999999998753 223332111110000
Q ss_pred ------cC---eEEEEEEcCCCCC-----------chhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCC
Q 031796 59 ------KN---ISFTVWDVGGQDK-----------IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD 118 (153)
Q Consensus 59 ------~~---~~~~i~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 118 (153)
.. ..+.+|||||... +......+++++|++++|+|+++.........++..+ .. ..
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l-~~---~~ 218 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGAL-RG---HE 218 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHT-TT---CG
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHH-Hh---cC
Confidence 00 2589999999764 4456677889999999999998755445555555443 22 35
Q ss_pred ceEEEEEeCCCccCCCCHhHHHH
Q 031796 119 AVLLVFANKQDLPNAMNAAEITD 141 (153)
Q Consensus 119 ~pii~v~~K~Dl~~~~~~~~~~~ 141 (153)
.|+++|+||+|+....+..++.+
T Consensus 219 ~pvilVlNK~Dl~~~~el~~~~~ 241 (550)
T 2qpt_A 219 DKIRVVLNKADMVETQQLMRVYG 241 (550)
T ss_dssp GGEEEEEECGGGSCHHHHHHHHH
T ss_pred CCEEEEEECCCccCHHHHHHHHH
Confidence 88999999999986544444433
No 160
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.73 E-value=4.6e-17 Score=129.39 Aligned_cols=126 Identities=22% Similarity=0.155 Sum_probs=92.9
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcC--Cc------------c-------cccCceeeEEEEEEEcCeEEEEEEcCCCCC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLG--EI------------V-------TTIPTIGFNVETVEYKNISFTVWDVGGQDK 73 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~--~~------------~-------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~ 73 (153)
.+.++|+++|..++|||||+++++.. .+ . ...+|+......+.+.+..+++|||||+.+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 55689999999999999999999831 11 0 112345555566777889999999999999
Q ss_pred chhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC---CHhHHHHHhCC
Q 031796 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGL 145 (153)
Q Consensus 74 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~---~~~~~~~~~~~ 145 (153)
|...+...++.+|++++|+|+++..++.....|.. ... .++|+++|+||+|+.... ..+++.+.++.
T Consensus 90 f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~----~~~p~ivviNKiD~~~~~~~~~~~~l~~~l~~ 159 (691)
T 1dar_A 90 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK----YKVPRIAFANKMDKTGADLWLVIRTMQERLGA 159 (691)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH----TTCCEEEEEECTTSTTCCHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH----cCCCEEEEEECCCcccCCHHHHHHHHHHHhCC
Confidence 99999999999999999999998777765544433 322 378999999999998654 24445555554
No 161
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.72 E-value=6.9e-17 Score=126.12 Aligned_cols=126 Identities=21% Similarity=0.254 Sum_probs=88.3
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCC--cc---------cc---c----CceeeEEEEEEEc-----CeEEEEEEcCCC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGE--IV---------TT---I----PTIGFNVETVEYK-----NISFTVWDVGGQ 71 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~--~~---------~~---~----~t~~~~~~~~~~~-----~~~~~i~D~~g~ 71 (153)
.+..+++++|..++|||||+++++... +. .. . .|+......+.+. .+.+++|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 345799999999999999999997521 11 00 0 1222222333333 378999999999
Q ss_pred CCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCC---HhHHHHHhCC
Q 031796 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGL 145 (153)
Q Consensus 72 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~---~~~~~~~~~~ 145 (153)
.+|...+...++.+|++++|+|+++..+......|.... . .++|+++|+||+|+.+... .+++++.+++
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~-~----~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~ 155 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV-E----QDLVIIPVINKIDLPSADVDRVKKQIEEVLGL 155 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH-H----TTCEEEEEEECTTSTTCCHHHHHHHHHHTSCC
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH-H----CCCCEEEEEeccCccccCHHHHHHHHHHhhCC
Confidence 999988888999999999999999887777666655543 2 3689999999999986542 2345555554
No 162
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.71 E-value=2.1e-17 Score=125.92 Aligned_cols=114 Identities=18% Similarity=0.156 Sum_probs=83.0
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcC--Cccc--------------------------------ccCceeeEEEEEEEcC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLG--EIVT--------------------------------TIPTIGFNVETVEYKN 60 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~--~~~~--------------------------------~~~t~~~~~~~~~~~~ 60 (153)
+..++|+++|..++|||||++++++. .+.. ...|+......++...
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 45689999999999999999999764 1110 1234555556677778
Q ss_pred eEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcc---cHH---HHHHHHHHHHcCCCCCCc-eEEEEEeCCCccC
Q 031796 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RVV---EARDELHRMLNEDELRDA-VLLVFANKQDLPN 132 (153)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~-pii~v~~K~Dl~~ 132 (153)
..+.+|||||+++|.......++.+|++++|+|+++.. +|. .....+... .. .++ ++++|+||+|+.+
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~-~~---~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA-FT---LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-HH---TTCCEEEEEEECGGGGT
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHH-HH---cCCCeEEEEEEcccccc
Confidence 89999999999999988888999999999999998642 121 122222222 11 245 4999999999984
No 163
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.71 E-value=8.1e-17 Score=122.99 Aligned_cols=116 Identities=17% Similarity=0.196 Sum_probs=69.6
Q ss_pred cccCccEEEEEcCCCCCHHHHHHhHhcC--Ccc--------------------------------cccCceeeEEEEEEE
Q 031796 13 FAKKEMRILMVGLDAAGKTTILYKLKLG--EIV--------------------------------TTIPTIGFNVETVEY 58 (153)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~~~~~--~~~--------------------------------~~~~t~~~~~~~~~~ 58 (153)
..+..++|+++|..++|||||+++++.. .+. ....|+......+..
T Consensus 39 ~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~ 118 (467)
T 1r5b_A 39 YGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET 118 (467)
T ss_dssp SCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC
T ss_pred cCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec
Confidence 3466799999999999999999999642 110 011244444445666
Q ss_pred cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcc---cHH---HHHHHHHHHHcCCCCCCce-EEEEEeCCCcc
Q 031796 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RVV---EARDELHRMLNEDELRDAV-LLVFANKQDLP 131 (153)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-ii~v~~K~Dl~ 131 (153)
.+..+.+|||||+++|.......++.+|++++|+|+++.. +|. .....+..... .++| +++++||+|+.
T Consensus 119 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~----~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 119 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART----QGINHLVVVINKMDEP 194 (467)
T ss_dssp SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH----TTCSSEEEEEECTTST
T ss_pred CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH----cCCCEEEEEEECccCC
Confidence 7789999999999999888888899999999999998752 221 11111121111 3566 99999999996
Q ss_pred C
Q 031796 132 N 132 (153)
Q Consensus 132 ~ 132 (153)
.
T Consensus 195 ~ 195 (467)
T 1r5b_A 195 S 195 (467)
T ss_dssp T
T ss_pred C
Confidence 4
No 164
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.71 E-value=2.9e-17 Score=125.83 Aligned_cols=111 Identities=18% Similarity=0.140 Sum_probs=81.6
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCC----c---c-cc--cCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGE----I---V-TT--IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN 84 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~----~---~-~~--~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 84 (153)
.+.++++++|..++|||||++++.+.. . . +. ..|....+..+...+..+.+|||||+++|.......++.
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~ 96 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI 96 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhh
Confidence 456899999999999999999998876 1 1 11 124455555667788999999999999998888888999
Q ss_pred CCEEEEEEECCCc---ccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 85 TQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 85 ~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
+|++++|+|+++. ++...+. .+.. .++|+++|+||+|+.++
T Consensus 97 aD~~ilVvda~~g~~~qt~e~l~-----~~~~---~~ip~IvviNK~Dl~~~ 140 (482)
T 1wb1_A 97 IDLALIVVDAKEGPKTQTGEHML-----ILDH---FNIPIIVVITKSDNAGT 140 (482)
T ss_dssp CCEEEEEEETTTCSCHHHHHHHH-----HHHH---TTCCBCEEEECTTSSCH
T ss_pred CCEEEEEEecCCCccHHHHHHHH-----HHHH---cCCCEEEEEECCCcccc
Confidence 9999999999873 3333222 1111 35788999999999864
No 165
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.71 E-value=7.3e-17 Score=119.64 Aligned_cols=116 Identities=21% Similarity=0.172 Sum_probs=78.3
Q ss_pred ccE-EEEEcCCCCCHHHHHHhHhcCCccc---ccCceeeEEEEEEEcCeEEEEEEcCCCCC---------chhcHHHhhc
Q 031796 17 EMR-ILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGFNVETVEYKNISFTVWDVGGQDK---------IRPLWRHYFQ 83 (153)
Q Consensus 17 ~~~-i~v~G~~~~GKSsli~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~~ 83 (153)
.++ ++++|++|+|||||+|++.+..... ..+|.+.....+...+..+.+|||+|... +... ...+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~t-l~~~~ 256 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVT-LSEAK 256 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHH-HHGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHH-HHHHH
Confidence 355 9999999999999999999876531 13455556667777788999999999632 2222 23468
Q ss_pred CCCEEEEEEECCCcc--cHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 84 NTQGLIFVVDSNDRD--RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 84 ~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
.+|.+++|+|++++. ....... +...+......+.|+++|+||+|+....
T Consensus 257 ~aD~il~VvD~s~~~~~~~~~~~~-~~~~L~~l~~~~~p~ilV~NK~Dl~~~~ 308 (364)
T 2qtf_A 257 YSDALILVIDSTFSENLLIETLQS-SFEILREIGVSGKPILVTLNKIDKINGD 308 (364)
T ss_dssp GSSEEEEEEETTSCHHHHHHHHHH-HHHHHHHHTCCSCCEEEEEECGGGCCSC
T ss_pred hCCEEEEEEECCCCcchHHHHHHH-HHHHHHHhCcCCCCEEEEEECCCCCCch
Confidence 899999999998875 3333322 2233332223578999999999997643
No 166
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.71 E-value=3.7e-17 Score=121.51 Aligned_cols=101 Identities=6% Similarity=0.038 Sum_probs=77.5
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcc
Q 031796 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 98 (153)
+++++|..++|||||++++. ....|+......++..+..+.+|||||+++|.......++.+|++++|+| + ..
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-----~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~-~g 95 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-----KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-P-QG 95 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-----EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T-TC
T ss_pred EEEEECCCCCCHHHHHHHHH-----hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-C-CC
Confidence 99999999999999999998 22344555556666777899999999999998877888899999999999 4 33
Q ss_pred cHHHHHHHHHHHHcCCCCCCceE-EEEEe-CCCc
Q 031796 99 RVVEARDELHRMLNEDELRDAVL-LVFAN-KQDL 130 (153)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~pi-i~v~~-K~Dl 130 (153)
.......++..... .++|. ++++| |+|+
T Consensus 96 ~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 96 LDAHTGECIIALDL----LGFKHGIIALTRSDST 125 (370)
T ss_dssp CCHHHHHHHHHHHH----TTCCEEEEEECCGGGS
T ss_pred CcHHHHHHHHHHHH----cCCCeEEEEEEeccCC
Confidence 34444444443322 24566 88888 9999
No 167
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.70 E-value=2.3e-17 Score=128.96 Aligned_cols=110 Identities=18% Similarity=0.156 Sum_probs=80.2
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccccC-----ceeeEEEEEE----------------EcCeEEEEEEcCCCCC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIGFNVETVE----------------YKNISFTVWDVGGQDK 73 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~-----t~~~~~~~~~----------------~~~~~~~i~D~~g~~~ 73 (153)
.+..+|+++|..++|||||++++.+..+....+ +.+....... .....+.+|||||++.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 467899999999999999999998765432221 2222222111 1112699999999999
Q ss_pred chhcHHHhhcCCCEEEEEEECCC---cccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 74 IRPLWRHYFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 74 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
|...+...++.+|++++|+|+++ ++++..+.. + .. .++|+++++||+|+..
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l-~~---~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----L-RM---YRTPFVVAANKIDRIH 136 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----H-HH---TTCCEEEEEECGGGST
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----H-HH---cCCeEEEEeccccccc
Confidence 99988888899999999999998 555544431 1 11 4689999999999964
No 168
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.70 E-value=1.6e-16 Score=119.54 Aligned_cols=114 Identities=20% Similarity=0.179 Sum_probs=77.9
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCc---c-cccC--ceeeEEEEEEE---------------c--------CeEEE
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEI---V-TTIP--TIGFNVETVEY---------------K--------NISFT 64 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~---~-~~~~--t~~~~~~~~~~---------------~--------~~~~~ 64 (153)
.+..++|+++|..++|||||++++.+... . ...+ |....+..... . ...+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 35679999999999999999999985432 1 1122 44433322221 0 16899
Q ss_pred EEEcCCCCCchhcHHHhhcCCCEEEEEEECCCc----ccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 65 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
+|||||+++|.......+..+|++++|+|+++. ++...+.. +. .+ ...|+++++||+|+.+..
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~-~~-~l-----~~~~iivv~NK~Dl~~~~ 151 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA-LE-IL-----GIDKIIIVQNKIDLVDEK 151 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH-HH-HT-----TCCCEEEEEECTTSSCTT
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH-HH-Hc-----CCCeEEEEEEccCCCCHH
Confidence 999999999887777777889999999999854 33333321 11 11 235799999999998654
No 169
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.70 E-value=8e-17 Score=120.77 Aligned_cols=112 Identities=18% Similarity=0.098 Sum_probs=80.9
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCC-------ccc------------ccCceeeEEEEEEEcCeEEEEEEcCCCCCchh
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGE-------IVT------------TIPTIGFNVETVEYKNISFTVWDVGGQDKIRP 76 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~-------~~~------------~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 76 (153)
..+||+++|..++|||||++++.+.. +.. ...|+......+......+.+|||||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 46899999999999999999998631 110 01233333344555668999999999999988
Q ss_pred cHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCce-EEEEEeCCCccC
Q 031796 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPN 132 (153)
Q Consensus 77 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-ii~v~~K~Dl~~ 132 (153)
.....++.+|++++|+|+++....... ..+... .. .++| +++++||+|+.+
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l~~~-~~---~~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTR-EHLLLA-RQ---IGVEHVVVYVNKADAVQ 133 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHH-HH---TTCCCEEEEEECGGGCS
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHH-HHHHHH-HH---cCCCeEEEEEECcccCC
Confidence 888889999999999999875433322 222222 21 2577 789999999975
No 170
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.70 E-value=2.1e-16 Score=125.72 Aligned_cols=127 Identities=20% Similarity=0.157 Sum_probs=92.6
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhc--CCcc------------c-------ccCceeeEEEEEEEcCeEEEEEEcCCCC
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKL--GEIV------------T-------TIPTIGFNVETVEYKNISFTVWDVGGQD 72 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~--~~~~------------~-------~~~t~~~~~~~~~~~~~~~~i~D~~g~~ 72 (153)
..+..+|+++|.+++|||||+++++. ..+. . ...|+......+.+.+..+.+|||||+.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence 35668999999999999999999984 2211 0 1123344445677788999999999999
Q ss_pred CchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCC---HhHHHHHhCC
Q 031796 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGL 145 (153)
Q Consensus 73 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~---~~~~~~~~~~ 145 (153)
++...+...++.+|++++|+|+++..+......| ..... .+.|+++|+||+|+..... .+++.+.++.
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~-~~~~~----~~~p~ilviNK~Dl~~~~~~~~~~~l~~~l~~ 157 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVW-RQATT----YGVPRIVFVNKMDKLGANFEYSVSTLHDRLQA 157 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCCEEEEEECTTSTTCCHHHHHHHHHHHHCC
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHH-HHHHH----cCCCEEEEEECCCccccchHHHHHHHHHHhCC
Confidence 9998889999999999999999987766555443 33333 3689999999999987542 3445555543
No 171
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.70 E-value=1.4e-16 Score=128.90 Aligned_cols=113 Identities=18% Similarity=0.095 Sum_probs=85.5
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCC------------cccc-------cCceeeEEEEEEEc----------------
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGE------------IVTT-------IPTIGFNVETVEYK---------------- 59 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~------------~~~~-------~~t~~~~~~~~~~~---------------- 59 (153)
.+.+||+++|..++|||||+++++... +... ..|+......+.+.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 456899999999999999999997641 1110 11333333344443
Q ss_pred CeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccC
Q 031796 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~ 132 (153)
+..+++|||||+.+|...+..+++.+|++++|+|+++..++.....|.. ... .++|+++|+||+|+..
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~~----~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQ-ALG----ERIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHH-HHH----TTCEEEEEEECHHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HHH----cCCCeEEEEECCCcch
Confidence 6789999999999999999999999999999999999877776554433 333 3689999999999874
No 172
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.70 E-value=1.1e-16 Score=116.32 Aligned_cols=118 Identities=19% Similarity=0.235 Sum_probs=75.7
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccc-------cCceeeEEE---------------------------------
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-------IPTIGFNVE--------------------------------- 54 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-------~~t~~~~~~--------------------------------- 54 (153)
....+|+++|.+|+|||||+|++++..+.+. .|+.-....
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 3557999999999999999999999876211 110000000
Q ss_pred -----------------------EEEEcCeEEEEEEcCCCCC-------------chhcHHHhhcCCCEEEEEEECCCcc
Q 031796 55 -----------------------TVEYKNISFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIFVVDSNDRD 98 (153)
Q Consensus 55 -----------------------~~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~ 98 (153)
........+.+|||||... +......+++++|++++|+|.++..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 0111235799999999754 3455677889999999999974432
Q ss_pred cHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCC
Q 031796 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (153)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~ 135 (153)
........+...+.. .+.|+++|+||+|+.....
T Consensus 182 ~~~~~~~~i~~~~~~---~~~~~i~v~NK~Dl~~~~~ 215 (315)
T 1jwy_B 182 LANSDALQLAKEVDP---EGKRTIGVITKLDLMDKGT 215 (315)
T ss_dssp STTCSHHHHHHHHCS---SCSSEEEEEECTTSSCSSC
T ss_pred hhhhHHHHHHHHhCC---CCCcEEEEEcCcccCCcch
Confidence 111111122333333 4689999999999976543
No 173
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.69 E-value=1.9e-18 Score=133.30 Aligned_cols=114 Identities=19% Similarity=0.192 Sum_probs=83.9
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCc--eeeEEEEEEE-cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPT--IGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t--~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 90 (153)
.+..+|+++|.+++|||||++++.+..+... .++ ..+....+.. .+..+.+|||||++.|...+...++.+|++++
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 3568999999999999999999987665422 222 2222223333 34589999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
|+|+++......... +..... .++|+++++||+|+.+.
T Consensus 82 VVDa~dg~~~qt~e~-l~~~~~----~~vPiIVViNKiDl~~~ 119 (537)
T 3izy_P 82 VVAADDGVMKQTVES-IQHAKD----AHVPIVLAINKCDKAEA 119 (537)
T ss_dssp ECBSSSCCCHHHHHH-HHHHHT----TTCCEEECCBSGGGTTT
T ss_pred EEECCCCccHHHHHH-HHHHHH----cCCcEEEEEeccccccc
Confidence 999988655443332 222222 36899999999999753
No 174
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.69 E-value=2.1e-16 Score=119.87 Aligned_cols=113 Identities=18% Similarity=0.231 Sum_probs=78.1
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCcc--cccC--ceeeEEEEEEEcCeEEEEEEcCCCCCchh-----------c-HH
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP-----------L-WR 79 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~-~~ 79 (153)
..++++++|++|||||||+|++.+.... ...+ |.......+...+..+.+|||+|..+... . ..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 3589999999999999999999987642 3333 22333456677788999999999743321 1 13
Q ss_pred HhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 80 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
..++.+|++++|+|+++..+.... ++...+.. .+.|+++|+||+|+...
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~---~~~~~ilv~NK~Dl~~~ 307 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQDQ--RMAGLMER---RGRASVVVFNKWDLVVH 307 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH---TTCEEEEEEECGGGSTT
T ss_pred HHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECccCCCc
Confidence 467889999999999876665432 23333332 46899999999999754
No 175
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.69 E-value=8.6e-17 Score=121.03 Aligned_cols=115 Identities=20% Similarity=0.180 Sum_probs=80.0
Q ss_pred cccCccEEEEEcCCCCCHHHHHHhHhcCCc---c-cccC--ceeeEEEEEEEc-----------------------CeEE
Q 031796 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEI---V-TTIP--TIGFNVETVEYK-----------------------NISF 63 (153)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~~~~~~~---~-~~~~--t~~~~~~~~~~~-----------------------~~~~ 63 (153)
..+..++|+++|..++|||||++++.+... . ...+ |....+...... ...+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 345669999999999999999999985432 1 1122 444443332220 1689
Q ss_pred EEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCc----ccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 64 ~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
.+|||||+++|.......+..+|++++|+|+++. ++...+. .+. .+ ...|+++|+||+|+.+..
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~-~~~-~~-----~~~~iivviNK~Dl~~~~ 153 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM-ALQ-II-----GQKNIIIAQNKIELVDKE 153 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH-HHH-HH-----TCCCEEEEEECGGGSCHH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH-HHH-Hc-----CCCcEEEEEECccCCCHH
Confidence 9999999999887777778889999999999854 2333332 121 11 235799999999998643
No 176
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.68 E-value=1.1e-17 Score=128.15 Aligned_cols=111 Identities=21% Similarity=0.237 Sum_probs=81.8
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccc-c--CceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-I--PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~--~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 91 (153)
.+..+|+++|+.++|||||++++.+..+... . .|.......+...+..+.+|||||++.|...+...++.+|++++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 4678999999999999999999987554321 1 122222233444567899999999999999888889999999999
Q ss_pred EECCCc---ccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 92 VDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 92 ~d~~~~---~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
+|+++. ++...+ ..... .++|+++++||+|+.+.
T Consensus 82 Vda~~g~~~qT~e~l----~~~~~----~~vPiIVviNKiDl~~~ 118 (501)
T 1zo1_I 82 VAADDGVMPQTIEAI----QHAKA----AQVPVVVAVNKIDKPEA 118 (501)
T ss_dssp EETTTBSCTTTHHHH----HHHHH----TTCCEEEEEECSSSSTT
T ss_pred eecccCccHHHHHHH----HHHHh----cCceEEEEEEecccccc
Confidence 999873 344332 22211 36899999999999753
No 177
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.68 E-value=3.9e-16 Score=112.49 Aligned_cols=116 Identities=20% Similarity=0.216 Sum_probs=76.3
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCccc-------ccCc----------------------eeeE-------------
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-------TIPT----------------------IGFN------------- 52 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-------~~~t----------------------~~~~------------- 52 (153)
....+|+++|.+|+|||||++++.+..+.+ ..|+ +...
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 456799999999999999999999987631 1122 0000
Q ss_pred ------------EEEEEE-cCeEEEEEEcCCCC-------------CchhcHHHhhcCCCEEE-EEEECCCcccHHHHHH
Q 031796 53 ------------VETVEY-KNISFTVWDVGGQD-------------KIRPLWRHYFQNTQGLI-FVVDSNDRDRVVEARD 105 (153)
Q Consensus 53 ------------~~~~~~-~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~~ 105 (153)
...+.. ....+.+|||||.. .+......++++++.++ +|+|+++..+......
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 000111 13689999999964 23456677888888776 7999876543333222
Q ss_pred HHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 106 ELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 106 ~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
++. .+.. .+.|+++|+||+|+.+..
T Consensus 184 ~~~-~~~~---~~~~~i~V~NK~Dl~~~~ 208 (299)
T 2aka_B 184 IAK-EVDP---QGQRTIGVITKLDLMDEG 208 (299)
T ss_dssp HHH-HHCT---TCSSEEEEEECGGGSCTT
T ss_pred HHH-HhCC---CCCeEEEEEEccccCCCC
Confidence 333 3332 468999999999997654
No 178
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.68 E-value=3.9e-17 Score=121.07 Aligned_cols=115 Identities=17% Similarity=0.284 Sum_probs=66.0
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcc-cc---------cCceeeEEEEEE--EcC--eEEEEEEcCCC-------CC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TT---------IPTIGFNVETVE--YKN--ISFTVWDVGGQ-------DK 73 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~-~~---------~~t~~~~~~~~~--~~~--~~~~i~D~~g~-------~~ 73 (153)
...++|+++|++|+|||||++++++.... .. .+|......... ..+ ..+.+|||||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 45689999999999999999998765422 11 134444433332 223 47999999998 66
Q ss_pred chhcHH-------HhhcCC-------------CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 74 IRPLWR-------HYFQNT-------------QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 74 ~~~~~~-------~~~~~~-------------~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
+..+.. .+++++ |+++++++.+ ..++......+...+. .++|+|+|+||+|+...
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH----NKVNIVPVIAKADTLTL 189 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC----S-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc----cCCCEEEEEECCCCCCH
Confidence 666655 555543 3455555432 3455555444444333 47899999999999764
Q ss_pred C
Q 031796 134 M 134 (153)
Q Consensus 134 ~ 134 (153)
.
T Consensus 190 ~ 190 (361)
T 2qag_A 190 K 190 (361)
T ss_dssp H
T ss_pred H
Confidence 3
No 179
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.68 E-value=1e-15 Score=121.88 Aligned_cols=125 Identities=17% Similarity=0.082 Sum_probs=89.6
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCC--cc------------c-------ccCceeeEEEEEEEcC-------eEEEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGE--IV------------T-------TIPTIGFNVETVEYKN-------ISFTVW 66 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~--~~------------~-------~~~t~~~~~~~~~~~~-------~~~~i~ 66 (153)
.+.++|+++|..++|||||+++++... +. . ...|+......+.+.+ ..+++|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 567899999999999999999996421 11 0 0123333444555555 899999
Q ss_pred EcCCCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC---CHhHHHHHh
Q 031796 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKL 143 (153)
Q Consensus 67 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~---~~~~~~~~~ 143 (153)
||||+.+|...+...++.+|++++|+|+++........ .|..... .++|+++|+||+|+.... ..+++.+.+
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~-~~~~~~~----~~ip~ilviNKiD~~~~~~~~~~~~l~~~l 162 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSET-VWRQANK----YKVPRIAFVNKMDRMGANFLKVVNQIKTRL 162 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHH-HHHHHHH----cCCCEEEEEeCCCcccccHHHHHHHHHHHh
Confidence 99999999988899999999999999998765544333 3333322 368999999999998653 233444444
Q ss_pred C
Q 031796 144 G 144 (153)
Q Consensus 144 ~ 144 (153)
+
T Consensus 163 ~ 163 (704)
T 2rdo_7 163 G 163 (704)
T ss_pred C
Confidence 4
No 180
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.67 E-value=4e-16 Score=115.57 Aligned_cols=115 Identities=17% Similarity=0.251 Sum_probs=76.1
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCcccc-cC--cee---e--------------------------------------
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IP--TIG---F-------------------------------------- 51 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~--t~~---~-------------------------------------- 51 (153)
.-.+|+|+|++|||||||++++.+..+.+. .. |.. .
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 345999999999999999999999775211 11 100 0
Q ss_pred --------------EEEEEEEcCeEEEEEEcCCCCCc-------------hhcHHHhhcCCCEEEEEEECCCcccHHHHH
Q 031796 52 --------------NVETVEYKNISFTVWDVGGQDKI-------------RPLWRHYFQNTQGLIFVVDSNDRDRVVEAR 104 (153)
Q Consensus 52 --------------~~~~~~~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 104 (153)
...........+.+|||||..++ ......+++++|++++|+|.++.+......
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~ 192 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHH
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHH
Confidence 00001112346899999998776 566778899999999999876544332222
Q ss_pred HHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 105 DELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 105 ~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
..+...+. ....|+++|+||+|+...
T Consensus 193 ~~l~~~~~---~~~~~~i~V~nK~Dl~~~ 218 (360)
T 3t34_A 193 IKISREVD---PSGDRTFGVLTKIDLMDK 218 (360)
T ss_dssp HHHHHHSC---TTCTTEEEEEECGGGCCT
T ss_pred HHHHHHhc---ccCCCEEEEEeCCccCCC
Confidence 22222222 246789999999998754
No 181
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.65 E-value=2.7e-15 Score=118.86 Aligned_cols=124 Identities=15% Similarity=0.119 Sum_probs=89.8
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcc--------------c-------ccCceeeEEEEEEEcCeEEEEEEcCCCCC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--------------T-------TIPTIGFNVETVEYKNISFTVWDVGGQDK 73 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~--------------~-------~~~t~~~~~~~~~~~~~~~~i~D~~g~~~ 73 (153)
.+..+++++|+.|+|||||++++.+.... . ...+.......+......+++|||||+++
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 45689999999999999999999843211 0 01233444556677789999999999999
Q ss_pred chhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC---CHhHHHHHhC
Q 031796 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLG 144 (153)
Q Consensus 74 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~---~~~~~~~~~~ 144 (153)
|...+...++.+|++++|+|+++...... ..++..... .++|+++|+||+|+. .. ..+++++.++
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~----~~ip~ilv~NKiD~~-~~~~~~~~~l~~~l~ 154 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER----LGLPRMVVVTKLDKG-GDYYALLEDLRSTLG 154 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH----TTCCEEEEEECGGGC-CCHHHHHHHHHHHHC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH----ccCCEEEEecCCchh-hhHHHHHHHHHHHhC
Confidence 99888999999999999999876544332 233333332 368999999999998 43 2344555555
No 182
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.64 E-value=2.2e-17 Score=129.16 Aligned_cols=116 Identities=19% Similarity=0.169 Sum_probs=61.7
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCcc----------------------------------cccCceeeEEEEEEEc
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV----------------------------------TTIPTIGFNVETVEYK 59 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~----------------------------------~~~~t~~~~~~~~~~~ 59 (153)
.+..++|+++|.+++|||||+++|+...-. ....|.......+...
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 456689999999999999999999642100 0011333333445556
Q ss_pred CeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcc---cH--HHHHHHHHHHHcCCCCCCce-EEEEEeCCCccC
Q 031796 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RV--VEARDELHRMLNEDELRDAV-LLVFANKQDLPN 132 (153)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~--~~~~~~~~~~~~~~~~~~~p-ii~v~~K~Dl~~ 132 (153)
+..+.+|||||+++|.......++.+|++|+|+|+++.. .+ ..........+.. .++| +|+|+||+|+.+
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISEIVVSVNKLDLMS 329 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCCEEEEEECGGGGT
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCeEEEEEecccccc
Confidence 678999999999999888888889999999999997532 11 1101111111111 2354 999999999976
No 183
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.63 E-value=1.3e-15 Score=113.88 Aligned_cols=85 Identities=33% Similarity=0.552 Sum_probs=77.1
Q ss_pred ceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCC----------cccHHHHHHHHHHHHcCCCCC
Q 031796 48 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RDRVVEARDELHRMLNEDELR 117 (153)
Q Consensus 48 t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~ 117 (153)
|+++....+....+.+.+|||+|+++++..|..++++++++|+|||+++ .++|.+...|+..+.......
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 5667777788888999999999999999999999999999999999999 889999999999998776667
Q ss_pred CceEEEEEeCCCccC
Q 031796 118 DAVLLVFANKQDLPN 132 (153)
Q Consensus 118 ~~pii~v~~K~Dl~~ 132 (153)
++|+++|+||+|+..
T Consensus 284 ~~piiLvgNK~DL~~ 298 (402)
T 1azs_C 284 TISVILFLNKQDLLA 298 (402)
T ss_dssp SCCEEEEEECHHHHH
T ss_pred CCeEEEEEEChhhhh
Confidence 899999999999853
No 184
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.61 E-value=8.6e-16 Score=122.21 Aligned_cols=116 Identities=21% Similarity=0.286 Sum_probs=80.1
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCccc--ccCcee-e---EE-----EEE--------------------------
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIG-F---NV-----ETV-------------------------- 56 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~--~~~t~~-~---~~-----~~~-------------------------- 56 (153)
....++|+++|.+|+|||||+|++++..... ..|++. + .+ .+.
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 3567999999999999999999999887432 233221 0 00 011
Q ss_pred --------------------EEcC----eEEEEEEcCCCCC---chhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHH
Q 031796 57 --------------------EYKN----ISFTVWDVGGQDK---IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHR 109 (153)
Q Consensus 57 --------------------~~~~----~~~~i~D~~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~ 109 (153)
.... ..+.+|||||... .......+++++|++++|+|+++..+......+ ..
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l-~~ 224 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYL-EN 224 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHH-HH
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHH-HH
Confidence 0000 3589999999544 345566788999999999999887776655443 33
Q ss_pred HHcCCCCCCceEEEEEeCCCccCC
Q 031796 110 MLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 110 ~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
.+.. ...|+++|+||+|+...
T Consensus 225 ~l~~---~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 225 YIKG---RGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp HTTT---SCCCEEEEEECGGGGGG
T ss_pred HHHh---hCCCEEEEEECcccccc
Confidence 3332 25789999999998643
No 185
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.60 E-value=3.3e-15 Score=110.62 Aligned_cols=86 Identities=30% Similarity=0.566 Sum_probs=72.0
Q ss_pred cCceeeEEEEEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCC----------cccHHHHHHHHHHHHcCCC
Q 031796 46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RDRVVEARDELHRMLNEDE 115 (153)
Q Consensus 46 ~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~ 115 (153)
.+|+++....+....+.+.+|||+|++.++..|..++++++++|+|+|+++ ..++.+...++..+.....
T Consensus 186 ~~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~ 265 (362)
T 1zcb_A 186 RPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRV 265 (362)
T ss_dssp CCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred CCccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchh
Confidence 367888888888899999999999999999999999999999999999999 7799999999999988766
Q ss_pred CCCceEEEEEeCCCcc
Q 031796 116 LRDAVLLVFANKQDLP 131 (153)
Q Consensus 116 ~~~~pii~v~~K~Dl~ 131 (153)
..+.|+|+++||+|+.
T Consensus 266 ~~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 266 FSNVSIILFLNKTDLL 281 (362)
T ss_dssp GTTSEEEEEEECHHHH
T ss_pred hCCCCEEEEEEChhhh
Confidence 6789999999999986
No 186
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.59 E-value=3.6e-15 Score=122.59 Aligned_cols=113 Identities=18% Similarity=0.139 Sum_probs=79.1
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCC-------cc--------cccCcee----eEEEEEEEcCeEEEEEEcCCCCCch
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGE-------IV--------TTIPTIG----FNVETVEYKNISFTVWDVGGQDKIR 75 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~-------~~--------~~~~t~~----~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (153)
+..++|+++|..++|||||++++.+.. +. ....+.+ .....+......+.+|||||+++|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 456899999999999999999998631 00 0011222 2223455567899999999999998
Q ss_pred hcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCce-EEEEEeCCCccC
Q 031796 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPN 132 (153)
Q Consensus 76 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-ii~v~~K~Dl~~ 132 (153)
......++.+|++++|+|+++....+ ...++..... .++| +|+++||+|+.+
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~----lgIP~IIVVINKiDLv~ 426 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQ----VGVPYIIVFLNKCDMVD 426 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHH----HTCSCEEEEEECCTTCC
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHH----cCCCeEEEEEeeccccc
Confidence 88888899999999999998753322 2223322221 2567 899999999985
No 187
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.59 E-value=1.7e-15 Score=113.39 Aligned_cols=80 Identities=30% Similarity=0.329 Sum_probs=46.7
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcc-cccC--ceeeEEEEEE---------------------Ec---CeEEEEEEcCC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVE---------------------YK---NISFTVWDVGG 70 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~-~~~~--t~~~~~~~~~---------------------~~---~~~~~i~D~~g 70 (153)
++|+++|.+|+|||||+|++.+.+.. ...| |......... .. ...+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999987632 2222 2222222211 11 36799999999
Q ss_pred CCCc----hhcHH---HhhcCCCEEEEEEECCCc
Q 031796 71 QDKI----RPLWR---HYFQNTQGLIFVVDSNDR 97 (153)
Q Consensus 71 ~~~~----~~~~~---~~~~~~~~~i~v~d~~~~ 97 (153)
.... +.... ..++++|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7542 22222 346899999999999875
No 188
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.56 E-value=5.5e-14 Score=109.15 Aligned_cols=126 Identities=17% Similarity=0.180 Sum_probs=93.3
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCC------------------cccc-------cCceeeEEEEEEEcCeEEEEEEcC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGE------------------IVTT-------IPTIGFNVETVEYKNISFTVWDVG 69 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~------------------~~~~-------~~t~~~~~~~~~~~~~~~~i~D~~ 69 (153)
.+..|+.++|..++|||||..+++... .... ..|+......+.+++..++++|||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence 456899999999999999999996210 1111 114444556788999999999999
Q ss_pred CCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC---CHhHHHHHhCC
Q 031796 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGL 145 (153)
Q Consensus 70 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~---~~~~~~~~~~~ 145 (153)
|+.+|.......++-+|++++|+|+.+.-....... |..... .++|.+++.||+|..... ..+++.+.++.
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v-~~~a~~----~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~~ 182 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKL-MDVCRM----RATPVMTFVNKMDREALHPLDVMADIEQHLQI 182 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHH-HHHHHH----TTCCEEEEEECTTSCCCCHHHHHHHHHHHHTS
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHH-HHHHHH----hCCceEEEEecccchhcchhHhhhhhhhhcCC
Confidence 999999999999999999999999987544444333 344433 379999999999988764 24556666654
No 189
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.56 E-value=1.6e-14 Score=98.88 Aligned_cols=113 Identities=19% Similarity=0.260 Sum_probs=68.8
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcc-cccCceeeEE--EEEEEcCeEEEEEEcCCCCC----------chhcHHHh
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKNISFTVWDVGGQDK----------IRPLWRHY 81 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~-~~~~t~~~~~--~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~ 81 (153)
.+..+++++|++|+|||||++++.+..+. ...++.+... ..+...+ .+.+||+||... +......+
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 102 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGEY 102 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHHHHH
Confidence 55688999999999999999999987632 2233333221 2222223 678999999753 22222334
Q ss_pred h---cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 82 F---QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 82 ~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
+ +.++++++++|+++..++... .+...+.. ..+|+++++||+|+...
T Consensus 103 ~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~---~~~~~~~v~nK~D~~s~ 152 (210)
T 1pui_A 103 LEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVD---SNIAVLVLLTKADKLAS 152 (210)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCH
T ss_pred HHhhhcccEEEEEEECCCCCchhHH--HHHHHHHH---cCCCeEEEEecccCCCc
Confidence 4 467999999999876555321 11111111 36889999999998653
No 190
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.53 E-value=6.1e-14 Score=103.60 Aligned_cols=116 Identities=21% Similarity=0.252 Sum_probs=70.4
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCccc-------ccCce----------------------eeE-------------
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-------TIPTI----------------------GFN------------- 52 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~-------~~~t~----------------------~~~------------- 52 (153)
....+|+++|.+++|||||++++.+.++.+ ..|+. ...
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 345799999999999999999999987631 11220 000
Q ss_pred ------------EEEEEE-cCeEEEEEEcCCCCC-------------chhcHHHhhcCCCEEE-EEEECCCcccHHHHHH
Q 031796 53 ------------VETVEY-KNISFTVWDVGGQDK-------------IRPLWRHYFQNTQGLI-FVVDSNDRDRVVEARD 105 (153)
Q Consensus 53 ------------~~~~~~-~~~~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~~ 105 (153)
...+.. ....+.+|||||... +......++++.+.++ +|+|++..-.-.....
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 001111 246799999999532 3445666776666554 5556543211111111
Q ss_pred HHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 106 ELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 106 ~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
+...+.. .+.|+++|+||+|+.+..
T Consensus 189 -i~~~~~~---~~~~~i~V~NK~Dl~~~~ 213 (353)
T 2x2e_A 189 -VAKEVDP---QGQRTIGVITKLDLMDEG 213 (353)
T ss_dssp -HHHHHCT---TCTTEEEEEECGGGSCTT
T ss_pred -HHHHhCc---CCCceEEEeccccccCcc
Confidence 2222232 468999999999997643
No 191
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.52 E-value=2.6e-13 Score=100.23 Aligned_cols=79 Identities=23% Similarity=0.275 Sum_probs=57.9
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcc-cccC--ceeeEEEEEEEcC-----------------eEEEEEEcCCCCCch--
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKN-----------------ISFTVWDVGGQDKIR-- 75 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~-~~~~--t~~~~~~~~~~~~-----------------~~~~i~D~~g~~~~~-- 75 (153)
++++++|.+|+|||||+|++.+.... ...| |...+...+...+ ..+.+|||||..++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 68999999999999999999987632 2222 4444444444433 579999999998763
Q ss_pred -----hcHHHhhcCCCEEEEEEECCC
Q 031796 76 -----PLWRHYFQNTQGLIFVVDSND 96 (153)
Q Consensus 76 -----~~~~~~~~~~~~~i~v~d~~~ 96 (153)
......++++|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 223456799999999999986
No 192
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.49 E-value=1.6e-13 Score=101.79 Aligned_cols=112 Identities=19% Similarity=0.154 Sum_probs=81.3
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcc-cc--cCceeeEEEEEEEcCeEEEEEEcCCCCCc-------hhcHHHhhcCCCE
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKNISFTVWDVGGQDKI-------RPLWRHYFQNTQG 87 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~-~~--~~t~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~~~~ 87 (153)
.+|.++|.|+||||||+|++++.+.. .. ..|.......+...+.++.+.||||-.+. .......++++|+
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~ 152 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNL 152 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSE
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCc
Confidence 47999999999999999999987633 33 34677778889999999999999995432 1223456789999
Q ss_pred EEEEEECCCcccH-HHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031796 88 LIFVVDSNDRDRV-VEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 88 ~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~ 131 (153)
+++|+|++++... ..+...+... .....+.|.+++.||.|..
T Consensus 153 il~vvD~~~p~~~~~~i~~EL~~~--~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 153 LFIILDVNKPLHHKQIIEKELEGV--GIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp EEEEEETTSHHHHHHHHHHHHHHT--TEEETCCCCCEEEEECSSS
T ss_pred cccccccCccHHHHHHHHHHHHHh--hHhhccCChhhhhhHhhhh
Confidence 9999999886332 2233333332 1223456788899999974
No 193
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.49 E-value=1.6e-13 Score=103.15 Aligned_cols=115 Identities=23% Similarity=0.259 Sum_probs=77.2
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcc-cc--cCceeeEEEEEEEcC-eEEEEEEcCCCCCc----hhc---HHHhhcCCC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKN-ISFTVWDVGGQDKI----RPL---WRHYFQNTQ 86 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~-~~--~~t~~~~~~~~~~~~-~~~~i~D~~g~~~~----~~~---~~~~~~~~~ 86 (153)
-.+.++|++|+|||||++++.+.... .. ..|.......+.... ..+.+||+||..+. ... ....+++++
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 35889999999999999999887432 11 123344445555554 78999999997432 111 223356799
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCC-CCCCceEEEEEeCCCccCC
Q 031796 87 GLIFVVDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~pii~v~~K~Dl~~~ 133 (153)
.+++++|++ ...+..+..+..+..... .....|.++|+||+|+...
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~ 284 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE 284 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH
Confidence 999999998 555666555544443211 1235788999999999865
No 194
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.47 E-value=1.8e-13 Score=103.02 Aligned_cols=115 Identities=17% Similarity=0.221 Sum_probs=61.8
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccc---------cCceeeEEEEE--E--EcCeEEEEEEcCCCCCch------
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT---------IPTIGFNVETV--E--YKNISFTVWDVGGQDKIR------ 75 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~---------~~t~~~~~~~~--~--~~~~~~~i~D~~g~~~~~------ 75 (153)
.-.++|+++|++|+|||||++++.+..+... .++.......+ . .....+.+||++|...+.
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 4457899999999999999999998765311 12222222111 1 122478999999976531
Q ss_pred -hc-------H-----------HHhhcCCCEEEEEEECCCc-ccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 76 -PL-------W-----------RHYFQNTQGLIFVVDSNDR-DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 76 -~~-------~-----------~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
.+ . ..+++++++.+++|+.... .++......+...+. .+.|+|+|+||+|+...
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTP 182 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccH
Confidence 11 0 1123344443444443322 244444333333333 26899999999998754
No 195
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.46 E-value=1.7e-13 Score=99.20 Aligned_cols=129 Identities=16% Similarity=0.237 Sum_probs=67.6
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcC-Cccccc---------CceeeEEEEEE----EcCeEEEEEEcCCC-------CC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLG-EIVTTI---------PTIGFNVETVE----YKNISFTVWDVGGQ-------DK 73 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~-~~~~~~---------~t~~~~~~~~~----~~~~~~~i~D~~g~-------~~ 73 (153)
.-.++|+++|++|+|||||++++.+. .++... ++.......+. .....+.+||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 45689999999999999999998775 333211 22222222222 12368999999998 55
Q ss_pred chhcHH-------HhhcC-------------CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 74 IRPLWR-------HYFQN-------------TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 74 ~~~~~~-------~~~~~-------------~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
+..... .++++ +++++++.+.+. .+++.....+...+. .+.|+++|+||.|+...
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l~----~~~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAIH----NKVNIVPVIAKADTLTL 170 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHHT----TTSCEEEEECCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHHH----hcCCEEEEEEeCCCCCH
Confidence 555544 44433 234555554332 123333222222222 35789999999999753
Q ss_pred C-------CHhHHHHHhCCCcc
Q 031796 134 M-------NAAEITDKLGLHSL 148 (153)
Q Consensus 134 ~-------~~~~~~~~~~~~~~ 148 (153)
. ...++++..++.++
T Consensus 171 ~e~~~~~~~~~~~~~~~~~~~~ 192 (301)
T 2qnr_A 171 KERERLKKRILDEIEEHNIKIY 192 (301)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHcCCeEE
Confidence 2 23445666676654
No 196
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.41 E-value=3.5e-12 Score=101.82 Aligned_cols=125 Identities=19% Similarity=0.122 Sum_probs=86.2
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCC--------------cccc---c----CceeeEEEEEEEc-------CeEEEEE
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGE--------------IVTT---I----PTIGFNVETVEYK-------NISFTVW 66 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~--------------~~~~---~----~t~~~~~~~~~~~-------~~~~~i~ 66 (153)
.+-.||.++|..++|||||..+++... +..+ + .|+......+.+. ++.++++
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 455899999999999999999986211 1110 1 1223333444443 5899999
Q ss_pred EcCCCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC---CHhHHHHHh
Q 031796 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKL 143 (153)
Q Consensus 67 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~---~~~~~~~~~ 143 (153)
||||+.+|.......++-+|++++|+|+.+.-..... ..|...... ++|.++++||+|..... ..+++.+.+
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~-~v~~~a~~~----~lp~i~~iNKiDr~~a~~~~~~~ei~~~l 165 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSE-TVWRQANKY----GVPRIVYVNKMDRQGANFLRVVEQIKKRL 165 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHH----TCCEEEEEECSSSTTCCHHHHHHHHHHHH
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHH-HHHHHHHHc----CCCeEEEEccccccCccHHHHHHHhhhhc
Confidence 9999999999999999999999999999765443333 233433333 69999999999987654 244555555
Q ss_pred C
Q 031796 144 G 144 (153)
Q Consensus 144 ~ 144 (153)
+
T Consensus 166 ~ 166 (709)
T 4fn5_A 166 G 166 (709)
T ss_dssp C
T ss_pred c
Confidence 4
No 197
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.40 E-value=2.6e-13 Score=107.12 Aligned_cols=124 Identities=20% Similarity=0.211 Sum_probs=89.6
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcC--Cc------------ccc-------cCceeeEEEEEEEcCeEEEEEEcCCCCCch
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLG--EI------------VTT-------IPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~--~~------------~~~-------~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (153)
-+||.++|..++|||||..+++.. .. ... ..|+......+.+++..++++||||+.+|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 468999999999999999998621 00 011 124444456677888999999999999999
Q ss_pred hcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCC---HhHHHHHhCC
Q 031796 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGL 145 (153)
Q Consensus 76 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~---~~~~~~~~~~ 145 (153)
......++-+|++++|+|+.+.-.... ...|..... .++|.+++.||+|.....- .+++.+.++.
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~----~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~ 149 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQAQT-RILFHALRK----MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSA 149 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHH----HTCSCEECCEECCSSSCCSHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHH----cCCCeEEEEeccccccCCHHHHHHHHHHHhCC
Confidence 999999999999999999976433322 233333333 2688999999999887653 4455555543
No 198
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.38 E-value=1.5e-13 Score=99.47 Aligned_cols=106 Identities=16% Similarity=0.069 Sum_probs=80.6
Q ss_pred HHHHhHhcCCcc--cccCceeeEEEEEEE-cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcc-cHHHHHHHH
Q 031796 32 TILYKLKLGEIV--TTIPTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDEL 107 (153)
Q Consensus 32 sli~~~~~~~~~--~~~~t~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~ 107 (153)
+++.++..+.|. .+.||++..+. ... .+.++.+||+ ++++..++..+++++|++++|||++++. ++..+..|+
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l 108 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFL 108 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHH
Confidence 577888877775 34678774443 322 2237899999 9999999999999999999999999987 688787777
Q ss_pred HHHHcCCCCCCceEEEEEeCCCccCCCC---HhHHHHHhC
Q 031796 108 HRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLG 144 (153)
Q Consensus 108 ~~~~~~~~~~~~pii~v~~K~Dl~~~~~---~~~~~~~~~ 144 (153)
..+.. .++|+++|+||+|+.+... .+++++.++
T Consensus 109 ~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~~ 144 (301)
T 1u0l_A 109 VLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIYS 144 (301)
T ss_dssp HHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHT
T ss_pred HHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHHh
Confidence 75533 4799999999999976433 445666655
No 199
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.34 E-value=1.4e-12 Score=97.27 Aligned_cols=85 Identities=22% Similarity=0.283 Sum_probs=52.1
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcc-cccC--ceeeEEEEEEEc-----------------CeEEEEEEcCCCCCc
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYK-----------------NISFTVWDVGGQDKI 74 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~-~~~~--t~~~~~~~~~~~-----------------~~~~~i~D~~g~~~~ 74 (153)
....++.++|.+|+|||||+|++.+.... ...| |...+...+... ...+.+||+||....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 45689999999999999999999987643 2222 333444444432 235999999998765
Q ss_pred hh-------cHHHhhcCCCEEEEEEECCCccc
Q 031796 75 RP-------LWRHYFQNTQGLIFVVDSNDRDR 99 (153)
Q Consensus 75 ~~-------~~~~~~~~~~~~i~v~d~~~~~s 99 (153)
.+ .+..+++++|++++|+|+++.++
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 43 45677899999999999986543
No 200
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.34 E-value=1.1e-12 Score=97.00 Aligned_cols=108 Identities=13% Similarity=0.161 Sum_probs=67.8
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcC------Ccc--cccCceee---------------------EEE-----------
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLG------EIV--TTIPTIGF---------------------NVE----------- 54 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~------~~~--~~~~t~~~---------------------~~~----------- 54 (153)
.+...|+++|.+|+||||+++++... +.. ...|.... ...
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~ 156 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGV 156 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccch
Confidence 45689999999999999999998532 100 11110000 000
Q ss_pred ---------EEEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEE
Q 031796 55 ---------TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFA 125 (153)
Q Consensus 55 ---------~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~ 125 (153)
.+...+..+.++||||... ......+.+|++++|+|....+....+. ....+.|+++|+
T Consensus 157 ~~~t~d~i~~~~~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~---------~~~~~~p~ivVl 224 (355)
T 3p32_A 157 TRATRETVVLLEAAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK---------KGVLELADIVVV 224 (355)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC---------TTSGGGCSEEEE
T ss_pred hHHHHHHHHHHhhCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH---------HhHhhcCCEEEE
Confidence 0012457899999999543 2334458899999999987554332211 112346899999
Q ss_pred eCCCccCCC
Q 031796 126 NKQDLPNAM 134 (153)
Q Consensus 126 ~K~Dl~~~~ 134 (153)
||+|+....
T Consensus 225 NK~Dl~~~~ 233 (355)
T 3p32_A 225 NKADGEHHK 233 (355)
T ss_dssp ECCCGGGHH
T ss_pred ECCCCcChh
Confidence 999997543
No 201
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.33 E-value=2e-12 Score=88.24 Aligned_cols=147 Identities=20% Similarity=0.258 Sum_probs=91.7
Q ss_pred HHHHHhhhcccCccEEEEEcCC-CCCHHHHHHhHhcCCcccc---cC-------ceeeE----------EEEE-------
Q 031796 5 FTKLFSRLFAKKEMRILMVGLD-AAGKTTILYKLKLGEIVTT---IP-------TIGFN----------VETV------- 56 (153)
Q Consensus 5 ~~~~~~~~~~~~~~~i~v~G~~-~~GKSsli~~~~~~~~~~~---~~-------t~~~~----------~~~~------- 56 (153)
+++++++.......++++.||. ..=..+++.++....-..+ .+ -.++. ..+.
T Consensus 4 ~~~~~~s~~~~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~e 83 (227)
T 3l82_B 4 VTSFLHSLIIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKE 83 (227)
T ss_dssp CCCSSSCCCCCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC----
T ss_pred HHHHHHHhccCCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHH
Confidence 4456777788899999999985 3445588888876541110 01 01111 1110
Q ss_pred ------EEc--CeEEEEEEcC------CCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHH---HHHHcCCC-CCC
Q 031796 57 ------EYK--NISFTVWDVG------GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL---HRMLNEDE-LRD 118 (153)
Q Consensus 57 ------~~~--~~~~~i~D~~------g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~-~~~ 118 (153)
+.. ..++-....| ||..++..|..|++++|++|||+|.+|.+.+. ....+ ..++.... ..+
T Consensus 84 r~~~~~~~~~~~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~g 162 (227)
T 3l82_B 84 RDRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSG 162 (227)
T ss_dssp ---------------------------------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSC
T ss_pred hhhhhhhhhhhhhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCC
Confidence 000 0123334444 78899999999999999999999999886654 44444 44444432 468
Q ss_pred ceEEEEEeCC-CccCCCCHhHHHHHhCCCccccCCC
Q 031796 119 AVLLVFANKQ-DLPNAMNAAEITDKLGLHSLRQRHW 153 (153)
Q Consensus 119 ~pii~v~~K~-Dl~~~~~~~~~~~~~~~~~~~~~~~ 153 (153)
.|++|++||. |++++..+.++++.+++..+ .|+|
T Consensus 163 apLLVlANKqqDlp~Ams~~EI~e~L~L~~l-~R~W 197 (227)
T 3l82_B 163 RPLLVLSCISQGDVKRMPCFYLAHELHLNLL-NHPW 197 (227)
T ss_dssp SCEEEEEEESSTTSCBCCHHHHHHHTTGGGG-CSCE
T ss_pred CeEEEEeCCCcCccCCCCHHHHHHHcCCcCC-CCCE
Confidence 9999999995 89999999999999999998 5887
No 202
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.26 E-value=1e-11 Score=91.60 Aligned_cols=106 Identities=13% Similarity=0.087 Sum_probs=61.9
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcC------Cc--ccccCceee--------------------EEE-----------E-
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLG------EI--VTTIPTIGF--------------------NVE-----------T- 55 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~------~~--~~~~~t~~~--------------------~~~-----------~- 55 (153)
....+.++|++|+|||||+|++.+. +. ....|+... .+. +
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t 152 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT 152 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence 3688999999999999999999852 11 011111000 000 0
Q ss_pred ---------EEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEe
Q 031796 56 ---------VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126 (153)
Q Consensus 56 ---------~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~ 126 (153)
+...+..+.++||+|.... .....+.+|.+++|+|.++......+.. .+ .+.|.++|+|
T Consensus 153 r~~~~~~~~~~~~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlN 220 (349)
T 2www_A 153 RTTNEAILLCEGAGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVT 220 (349)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEEC
T ss_pred HHHHHHHHhhccCCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEe
Confidence 0124567899999995422 2344678999999999876532221111 11 2457899999
Q ss_pred CCCccCC
Q 031796 127 KQDLPNA 133 (153)
Q Consensus 127 K~Dl~~~ 133 (153)
|+|+...
T Consensus 221 K~Dl~~~ 227 (349)
T 2www_A 221 KSDGDLI 227 (349)
T ss_dssp CCSGGGH
T ss_pred eecCCCc
Confidence 9999743
No 203
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.26 E-value=5.8e-11 Score=94.90 Aligned_cols=116 Identities=18% Similarity=0.165 Sum_probs=71.8
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccc--cC-ceee---E------------------------------------
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IP-TIGF---N------------------------------------ 52 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~--~~-t~~~---~------------------------------------ 52 (153)
....+|+|+|..++||||++|++++..+.+. .+ |... .
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 4557999999999999999999999875211 00 1000 0
Q ss_pred ------------EEEEEE-cCeEEEEEEcCCCCC-------------chhcHHHhh-cCCCEEEEEEECCCcccHHHHHH
Q 031796 53 ------------VETVEY-KNISFTVWDVGGQDK-------------IRPLWRHYF-QNTQGLIFVVDSNDRDRVVEARD 105 (153)
Q Consensus 53 ------------~~~~~~-~~~~~~i~D~~g~~~-------------~~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~ 105 (153)
...+.. ....+.++||||-.. .......++ ..+|++++|+|++....-....
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l- 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL- 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH-
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH-
Confidence 001111 123588999999543 122334444 4789999999997642222211
Q ss_pred HHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 106 ELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 106 ~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
.+...+.. .+.|+++|+||+|+....
T Consensus 208 ~ll~~L~~---~g~pvIlVlNKiDlv~~~ 233 (772)
T 3zvr_A 208 KIAKEVDP---QGQRTIGVITKLDLMDEG 233 (772)
T ss_dssp HHHHHHCT---TCSSEEEEEECTTSSCTT
T ss_pred HHHHHHHh---cCCCEEEEEeCcccCCcc
Confidence 12333333 368999999999997543
No 204
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.17 E-value=2.9e-11 Score=85.36 Aligned_cols=73 Identities=15% Similarity=0.030 Sum_probs=42.9
Q ss_pred eEEEEEEcCCCCCchhcHH------HhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 61 ISFTVWDVGGQDKIRPLWR------HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
+.+.+|||||+.+...... ..+.. +++++++|.+...+.......+..........+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 4799999999876533211 23456 8889999975443332222111111000011357899999999987543
No 205
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.17 E-value=6.9e-11 Score=87.65 Aligned_cols=79 Identities=22% Similarity=0.270 Sum_probs=54.9
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcc-cccC--ceeeEEEEEEE---------------------cCeEEEEEEcCCCCC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEY---------------------KNISFTVWDVGGQDK 73 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~-~~~~--t~~~~~~~~~~---------------------~~~~~~i~D~~g~~~ 73 (153)
++++++|.+|+|||||++++.+.... ...| |...+...... ....+.+|||||..+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 68999999999999999999875411 1111 22222222222 245799999999876
Q ss_pred ch-------hcHHHhhcCCCEEEEEEECCC
Q 031796 74 IR-------PLWRHYFQNTQGLIFVVDSND 96 (153)
Q Consensus 74 ~~-------~~~~~~~~~~~~~i~v~d~~~ 96 (153)
+. ......++++|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 42 223456799999999999975
No 206
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.15 E-value=1.5e-11 Score=90.38 Aligned_cols=63 Identities=14% Similarity=0.113 Sum_probs=40.6
Q ss_pred cCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
.+..+.++||||..+.... ..+.+|++++|+|.+..+.+..+.. . ..+.|.++|+||+|+...
T Consensus 147 ~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~------~~~~p~ivv~NK~Dl~~~ 209 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---G------LMEVADLIVINKDDGDNH 209 (341)
T ss_dssp TTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---H------HHHHCSEEEECCCCTTCH
T ss_pred cCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---h------hhcccCEEEEECCCCCCh
Confidence 3578999999997654432 4589999999999865432211100 0 014678999999999754
No 207
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.14 E-value=2e-11 Score=87.10 Aligned_cols=84 Identities=21% Similarity=0.303 Sum_probs=65.0
Q ss_pred cCCCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHH---HHHcCCC-CCCceEEEEEeC-CCccCCCCHhHHHHH
Q 031796 68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELH---RMLNEDE-LRDAVLLVFANK-QDLPNAMNAAEITDK 142 (153)
Q Consensus 68 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~---~~~~~~~-~~~~pii~v~~K-~Dl~~~~~~~~~~~~ 142 (153)
..||...+..|..|++++|++|||+|.+|.+.+. ....+. .++.... ..+.|++|++|| .|++++..+.++++.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 3578999999999999999999999999987654 333222 3333221 357899999996 699999999999999
Q ss_pred hCCCccccCCC
Q 031796 143 LGLHSLRQRHW 153 (153)
Q Consensus 143 ~~~~~~~~~~~ 153 (153)
+++..+ .|+|
T Consensus 273 L~L~~l-~r~W 282 (312)
T 3l2o_B 273 LHLNLL-NHPW 282 (312)
T ss_dssp TTGGGG-CSCE
T ss_pred cCCccC-CCcE
Confidence 999988 4777
No 208
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.14 E-value=7.6e-11 Score=81.15 Aligned_cols=107 Identities=14% Similarity=0.135 Sum_probs=63.2
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcc-------cccCce----------eeEEEEEE------------------Ec
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-------TTIPTI----------GFNVETVE------------------YK 59 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~-------~~~~t~----------~~~~~~~~------------------~~ 59 (153)
.+..+++++|.+|+|||||++++...... ...+.. +.....+. ..
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS 107 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence 45679999999999999999999764210 011100 11111111 12
Q ss_pred CeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
+..+.+|||+|+..... .+....+.+++|+|+++.... ...+ ... ...|+++|+||+|+...
T Consensus 108 ~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~~-~~~------~~~~~iiv~NK~Dl~~~ 169 (221)
T 2wsm_A 108 DCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEKH-PEI------FRVADLIVINKVALAEA 169 (221)
T ss_dssp TCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHHC-HHH------HHTCSEEEEECGGGHHH
T ss_pred CCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhhh-hhh------hhcCCEEEEecccCCcc
Confidence 45788999999521110 111256889999998765321 1111 111 14688999999999653
No 209
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.05 E-value=1.1e-09 Score=81.70 Aligned_cols=82 Identities=21% Similarity=0.320 Sum_probs=59.8
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCc-c-cccC--ceeeEEEEEEEcC-----------------eEEEEEEcCCCCC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEI-V-TTIP--TIGFNVETVEYKN-----------------ISFTVWDVGGQDK 73 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~-~-~~~~--t~~~~~~~~~~~~-----------------~~~~i~D~~g~~~ 73 (153)
....++.++|++|+|||||+|++.+... . .+.| |...+...+...+ ..+.+||+||...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 4457999999999999999999998664 2 2333 3444445555443 4689999999432
Q ss_pred -------chhcHHHhhcCCCEEEEEEECCC
Q 031796 74 -------IRPLWRHYFQNTQGLIFVVDSND 96 (153)
Q Consensus 74 -------~~~~~~~~~~~~~~~i~v~d~~~ 96 (153)
....+...++++|++++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34455667789999999999864
No 210
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.99 E-value=1.5e-10 Score=85.96 Aligned_cols=113 Identities=10% Similarity=0.113 Sum_probs=67.4
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcC-----C-cc-cccCceeeEEEEEEEcCeEEEEEEcCCCCCch--------hcHHH
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLG-----E-IV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIR--------PLWRH 80 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~-----~-~~-~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~ 80 (153)
+..+++++|.+|+|||||+|++.+. . .. ...|.+......+... ..+.++||||-.... .....
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~~ 239 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE-SGATLYDTPGIINHHQMAHFVDARDLKI 239 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS-TTCEEEECCSCCCCSSGGGGSCTTTHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC-CCeEEEeCCCcCcHHHHHHHHhHHHHHH
Confidence 3568999999999999999999876 2 21 2233222223333322 247899999954221 11222
Q ss_pred hh--cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 81 YF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 81 ~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
.+ ++.+.++++++....-.+..+.. +......+.|+++++||.|..+..
T Consensus 240 ~~~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~~~~~~~~~v~~k~d~~~~~ 290 (369)
T 3ec1_A 240 ITPKREIHPRVYQLNEGQTLFFGGLAR-----LDYIKGGRRSFVCYMANELTVHRT 290 (369)
T ss_dssp HSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEE
T ss_pred HhcccccCceEEEEcCCceEEECCEEE-----EEEccCCCceEEEEecCCcccccc
Confidence 22 67899999999732111111100 111122468999999999987543
No 211
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.90 E-value=4.3e-08 Score=75.39 Aligned_cols=123 Identities=18% Similarity=0.179 Sum_probs=70.8
Q ss_pred CccEEEEEcCCCCCHHHHHHhHh------cCCcc--cc---cCc-----------eeeEEEEE-----------------
Q 031796 16 KEMRILMVGLDAAGKTTILYKLK------LGEIV--TT---IPT-----------IGFNVETV----------------- 56 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~------~~~~~--~~---~~t-----------~~~~~~~~----------------- 56 (153)
+...|+++|.+||||||+++++. +.+.. .. .+. .++.+...
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999997 44321 10 000 00111110
Q ss_pred EEcCeEEEEEEcCCCCCchh-cHH---Hh--hcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceE-EEEEeCCC
Q 031796 57 EYKNISFTVWDVGGQDKIRP-LWR---HY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVL-LVFANKQD 129 (153)
Q Consensus 57 ~~~~~~~~i~D~~g~~~~~~-~~~---~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-i~v~~K~D 129 (153)
...+..+.++||||...... ... .. ...+|.+++|+|++...........+.. ..|+ .+|+||+|
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a~~~~~--------~~~i~gvVlNK~D 251 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKD--------KVDVASVIVTKLD 251 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHHHHHHH--------HHCCCCEEEECTT
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHHHHHHh--------hcCceEEEEeCCc
Confidence 11457899999999764321 111 11 2278999999999765432222222211 2564 88999999
Q ss_pred ccCCCC-HhHHHHHhCCC
Q 031796 130 LPNAMN-AAEITDKLGLH 146 (153)
Q Consensus 130 l~~~~~-~~~~~~~~~~~ 146 (153)
...... ...+.+.++.+
T Consensus 252 ~~~~~g~~l~~~~~~g~P 269 (504)
T 2j37_W 252 GHAKGGGALSAVAATKSP 269 (504)
T ss_dssp SCCCCTHHHHHHHHHCCC
T ss_pred cccchHHHHHHHHHhCCC
Confidence 875443 33455555543
No 212
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.90 E-value=1.1e-08 Score=77.01 Aligned_cols=114 Identities=17% Similarity=0.234 Sum_probs=61.2
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcccc-----cCceeeEEEEE--EEcC--eEEEEEEcCCCCCc--------------
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETV--EYKN--ISFTVWDVGGQDKI-------------- 74 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~~-----~~t~~~~~~~~--~~~~--~~~~i~D~~g~~~~-------------- 74 (153)
++++++|++|+|||||++.+.+..+... .+........+ .... ..+.++|++|-...
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 5699999999999999999988753211 12111111111 1122 36899999985422
Q ss_pred hhcHHHhh-------------cC--CCE-EEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHh
Q 031796 75 RPLWRHYF-------------QN--TQG-LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA 137 (153)
Q Consensus 75 ~~~~~~~~-------------~~--~~~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~ 137 (153)
...+..++ .. +|+ ++++.|.... +......+...+. .+.|+|+|.||+|.....+..
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~--l~~~Dieilk~L~----~~~~vI~Vi~KtD~Lt~~E~~ 195 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS--LKSLDLVTMKKLD----SKVNIIPIIAKADAISKSELT 195 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----CHHHHHHHHHTC----SCSEEEEEESCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC--CCHHHHHHHHHHh----hCCCEEEEEcchhccchHHHH
Confidence 11111111 11 233 5556665432 2222233333333 478999999999987654433
No 213
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.90 E-value=1.8e-09 Score=76.89 Aligned_cols=114 Identities=17% Similarity=0.255 Sum_probs=61.5
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCCcccc---------c-CceeeEEEEE--EE--cCeEEEEEEcCCCCCc-------h
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT---------I-PTIGFNVETV--EY--KNISFTVWDVGGQDKI-------R 75 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~~~~~---------~-~t~~~~~~~~--~~--~~~~~~i~D~~g~~~~-------~ 75 (153)
.++++++|++|+|||||++.+.+...+.. . .+.......+ +. -...+.++|++|-... .
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 36899999999999999999987532211 0 0111111111 11 1237899999983211 0
Q ss_pred hc-------H----HH----------hhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 76 PL-------W----RH----------YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 76 ~~-------~----~~----------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
.. . .. .+.++++.++++|.... .+......+...+.. ..++++|.+|.|.....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~-gL~~lD~~~l~~L~~----~~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGH-SLRPLDLEFMKHLSK----VVNIIPVIAKADTMTLE 156 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSS-SCCHHHHHHHHHHHT----TSEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCC-cCCHHHHHHHHHHHh----cCcEEEEEeccccCCHH
Confidence 00 0 00 11236888999995421 122222222333333 28999999999987654
Q ss_pred C
Q 031796 135 N 135 (153)
Q Consensus 135 ~ 135 (153)
+
T Consensus 157 e 157 (270)
T 3sop_A 157 E 157 (270)
T ss_dssp H
T ss_pred H
Confidence 3
No 214
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.88 E-value=9.9e-10 Score=81.53 Aligned_cols=114 Identities=8% Similarity=0.120 Sum_probs=65.2
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCC------cc--cccCceeeEEEEEEEcCeEEEEEEcCCCCCchh--------cHH
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGE------IV--TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP--------LWR 79 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~------~~--~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~ 79 (153)
...+++++|.+|+|||||+|++++.. .. ...|.+......+... ..+.++||||-..... ...
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLD-EESSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESS-SSCEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEec-CCeEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 34789999999999999999998752 11 1222111222222222 2388999999533221 111
Q ss_pred Hh--hcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCC
Q 031796 80 HY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (153)
Q Consensus 80 ~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~ 135 (153)
.. .++.+.++++++.........+.. ...+. ..+.|+++++||+|..+...
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~--~d~l~---~~~~~~~~v~nk~d~~~~~~ 290 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGLAR--FDYVS---GGRRAFTCHFSNRLTIHRTK 290 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTEE--EEEEE---SSSEEEEEEECTTSCEEEEE
T ss_pred HhccccccCceEEEEcCCCEEEEcceEE--EEEec---CCCceEEEEecCcccccccc
Confidence 22 256788999998732111111100 11112 24689999999999876543
No 215
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.83 E-value=6.2e-09 Score=76.41 Aligned_cols=106 Identities=14% Similarity=0.164 Sum_probs=61.9
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhc------CCcc--cccCceee-------------------EEEE------------
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKL------GEIV--TTIPTIGF-------------------NVET------------ 55 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~------~~~~--~~~~t~~~-------------------~~~~------------ 55 (153)
.+...+.++|++|+|||||++.+.+ ++.. ...++... ....
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~ 132 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 132 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccch
Confidence 4557899999999999999999973 2211 11110000 0000
Q ss_pred ----------EEEcCeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEE
Q 031796 56 ----------VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFA 125 (153)
Q Consensus 56 ----------~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~ 125 (153)
....+..+.++||+|..+-.. .....+|.+++++|.+..+....+... ..+.|.++++
T Consensus 133 tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~---------i~~~~~ivvl 200 (337)
T 2qm8_A 133 AAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKG---------IFELADMIAV 200 (337)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTT---------HHHHCSEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHH---------HhccccEEEE
Confidence 112467899999999764332 234789999999997643221111100 0134567778
Q ss_pred eCCCccC
Q 031796 126 NKQDLPN 132 (153)
Q Consensus 126 ~K~Dl~~ 132 (153)
||+|+..
T Consensus 201 NK~Dl~~ 207 (337)
T 2qm8_A 201 NKADDGD 207 (337)
T ss_dssp ECCSTTC
T ss_pred EchhccC
Confidence 9999753
No 216
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.68 E-value=9.2e-09 Score=72.97 Aligned_cols=55 Identities=25% Similarity=0.293 Sum_probs=35.3
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEE--EEEEEcCeEEEEEEcCCCCC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYKNISFTVWDVGGQDK 73 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~g~~~ 73 (153)
++++++|.+|+|||||+|++.+.......++.+.+. ..+. .+..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~-~~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFS-LENGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEE-CTTSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEE-eCCCEEEEECCCccc
Confidence 699999999999999999999876543322222211 1122 234789999999654
No 217
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.67 E-value=8.5e-08 Score=65.98 Aligned_cols=27 Identities=22% Similarity=0.182 Sum_probs=23.9
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~ 41 (153)
.+.++|+++|.+|||||||++++....
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 456899999999999999999998654
No 218
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.63 E-value=3.7e-08 Score=70.58 Aligned_cols=57 Identities=25% Similarity=0.390 Sum_probs=36.7
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcCCcccc--cCceeeEEEEEEEcCeEEEEEEcCCCC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQD 72 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~i~D~~g~~ 72 (153)
...++++++|.+|+|||||+|++.+.+.... .|.+......+.. +..+.++||||-.
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV-GKELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE-TTTEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe-CCCEEEEECcCcC
Confidence 4668999999999999999999998764322 2211111111222 3368999999964
No 219
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.54 E-value=1.1e-07 Score=68.70 Aligned_cols=59 Identities=19% Similarity=0.092 Sum_probs=49.3
Q ss_pred CCCchhcHHHhhcCCCEEEEEEECCCcc-cHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
++++..+...+++++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~ 125 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNE 125 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCc
Confidence 6777777778999999999999999886 88877787775533 47999999999999754
No 220
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.42 E-value=7e-07 Score=67.56 Aligned_cols=121 Identities=20% Similarity=0.199 Sum_probs=67.1
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcC------Ccc--ccc---C----------------c-----eeeE---E--EEE-EE
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLG------EIV--TTI---P----------------T-----IGFN---V--ETV-EY 58 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~------~~~--~~~---~----------------t-----~~~~---~--~~~-~~ 58 (153)
...|+++|++|+||||++..+... +.. ... + . ...+ . ..+ ..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 467999999999999999888642 110 000 0 0 0000 0 000 01
Q ss_pred cCeEEEEEEcCCCCCchhcHHH----h--hcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCc-e-EEEEEeCCCc
Q 031796 59 KNISFTVWDVGGQDKIRPLWRH----Y--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA-V-LLVFANKQDL 130 (153)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~----~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-p-ii~v~~K~Dl 130 (153)
..+.+.++||||.......... . +..+|.+++|+|+....... .....+ .. .. | ..+|.||+|.
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~~---~~~~~~-~~----~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAG---IQAKAF-KE----AVGEIGSIIVTKLDG 250 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGHH---HHHHHH-HT----TSCSCEEEEEECSSS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHHH---HHHHHH-hh----cccCCeEEEEeCCCC
Confidence 4567999999997654222111 1 12589999999986543221 112222 21 24 4 8899999998
Q ss_pred cCCCC-HhHHHHHhCC
Q 031796 131 PNAMN-AAEITDKLGL 145 (153)
Q Consensus 131 ~~~~~-~~~~~~~~~~ 145 (153)
..... ...+....+.
T Consensus 251 ~~~~g~~l~~~~~~~~ 266 (432)
T 2v3c_C 251 SAKGGGALSAVAETKA 266 (432)
T ss_dssp CSTTHHHHHHHHHSSC
T ss_pred ccchHHHHHHHHHHCC
Confidence 64322 2334455443
No 221
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.40 E-value=2.8e-07 Score=72.51 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGE 41 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~ 41 (153)
..++++|++||||||+++.+.+..
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 359999999999999999998864
No 222
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.33 E-value=7.5e-07 Score=69.71 Aligned_cols=60 Identities=20% Similarity=0.180 Sum_probs=40.3
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCcc-ccc-----CceeeEEEEE---EEcCeEEEEEEcCCCCC
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTI-----PTIGFNVETV---EYKNISFTVWDVGGQDK 73 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~-~~~-----~t~~~~~~~~---~~~~~~~~i~D~~g~~~ 73 (153)
......|+++|.+|+|||||+|++++.... ... .|.++..... ...+..+.++||||-..
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 456688999999999999999999987632 111 1222211111 12457899999999543
No 223
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.31 E-value=1.7e-06 Score=65.05 Aligned_cols=109 Identities=12% Similarity=0.156 Sum_probs=59.3
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcCCcccc-cCce-e----eEEEEEEEcC-eEEEEEEcCCCCCchhcHHHh-----hc
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTI-G----FNVETVEYKN-ISFTVWDVGGQDKIRPLWRHY-----FQ 83 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~~~~~~-~~t~-~----~~~~~~~~~~-~~~~i~D~~g~~~~~~~~~~~-----~~ 83 (153)
....+.++|++|+|||||+|.+.+...+.. ..+. + ......+... -.+.++|++|-.........+ +.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 445899999999999999999988432211 0000 0 0011112222 257899999843211222222 23
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031796 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 84 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~ 131 (153)
..+..++ ++..... .....+...+.. .+.|+++|.||.|+-
T Consensus 148 ~~~~~~~-lS~G~~~---kqrv~la~aL~~---~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 148 EYDFFII-ISATRFK---KNDIDIAKAISM---MKKEFYFVRTKVDSD 188 (413)
T ss_dssp GCSEEEE-EESSCCC---HHHHHHHHHHHH---TTCEEEEEECCHHHH
T ss_pred ccCCeEE-eCCCCcc---HHHHHHHHHHHh---cCCCeEEEEecCccc
Confidence 3455555 7765211 112222322222 257999999999864
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.29 E-value=2.3e-06 Score=64.76 Aligned_cols=123 Identities=20% Similarity=0.216 Sum_probs=68.0
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhc------CCcc--c--c-cC-----------ceeeEEEEE-----------------
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKL------GEIV--T--T-IP-----------TIGFNVETV----------------- 56 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~------~~~~--~--~-~~-----------t~~~~~~~~----------------- 56 (153)
++.-|+++|++|+||||++..+.. .+.. . + .+ ..+......
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 356789999999999999888752 2210 0 0 00 011111100
Q ss_pred EEcCeEEEEEEcCCCCCchhcHH------HhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCc
Q 031796 57 EYKNISFTVWDVGGQDKIRPLWR------HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (153)
Q Consensus 57 ~~~~~~~~i~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl 130 (153)
...++.+.++||+|........- .....+|.+++|+|++..+........+.+ . -.+..+|+||+|.
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~~---~----~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKE---A----TPIGSIIVTKLDG 251 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHH---S----CTTEEEEEECCSS
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHHh---h----CCCeEEEEECCCC
Confidence 01236899999999654322111 112357999999998765444333322222 1 2345688899998
Q ss_pred cCCCC-HhHHHHHhCC
Q 031796 131 PNAMN-AAEITDKLGL 145 (153)
Q Consensus 131 ~~~~~-~~~~~~~~~~ 145 (153)
..... ...+....++
T Consensus 252 ~~~gG~~ls~~~~~g~ 267 (443)
T 3dm5_A 252 SAKGGGALSAVAATGA 267 (443)
T ss_dssp CSSHHHHHHHHHTTCC
T ss_pred cccccHHHHHHHHHCC
Confidence 65432 2334444444
No 225
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.11 E-value=6.9e-06 Score=59.19 Aligned_cols=80 Identities=11% Similarity=0.118 Sum_probs=45.6
Q ss_pred cCeEEEEEEcCCCCC--chh-cHH-----HhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCce-EEEEEeCCC
Q 031796 59 KNISFTVWDVGGQDK--IRP-LWR-----HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQD 129 (153)
Q Consensus 59 ~~~~~~i~D~~g~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-ii~v~~K~D 129 (153)
..+.+.++||||... ... ... .....+|.+++|+|.......... ...+.. ..| ..+|.||.|
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~---~~~~~~-----~~~i~gvVlnk~D 250 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDL---ASKFNQ-----ASKIGTIIITKMD 250 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH---HHHHHH-----TCTTEEEEEECGG
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHHHH---HHHHHh-----hCCCCEEEEeCCC
Confidence 456799999999876 322 111 124478999999998643222222 222211 234 677889999
Q ss_pred ccCCCC-HhHHHHHhCCC
Q 031796 130 LPNAMN-AAEITDKLGLH 146 (153)
Q Consensus 130 l~~~~~-~~~~~~~~~~~ 146 (153)
...... ...+....+++
T Consensus 251 ~~~~~g~~~~~~~~~~~p 268 (297)
T 1j8m_F 251 GTAKGGGALSAVAATGAT 268 (297)
T ss_dssp GCTTHHHHHHHHHTTTCC
T ss_pred CCcchHHHHHHHHHHCcC
Confidence 764321 23444555443
No 226
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.08 E-value=3.2e-07 Score=70.09 Aligned_cols=94 Identities=28% Similarity=0.294 Sum_probs=54.3
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcCCcccccCceeeEEEEE----EEcCeEEEEEEcCCCC--CchhcH--------H
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETV----EYKNISFTVWDVGGQD--KIRPLW--------R 79 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~i~D~~g~~--~~~~~~--------~ 79 (153)
...+..|+++|.+|+||||+.+++...-.....++..+....+ ........+||..|.+ +.+..+ .
T Consensus 36 ~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 36 TNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3566899999999999999999986532111122222211100 0111334577888763 223222 4
Q ss_pred HhhcCCCEEEEEEECCCcccHHHHHHHHH
Q 031796 80 HYFQNTQGLIFVVDSNDRDRVVEARDELH 108 (153)
Q Consensus 80 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~ 108 (153)
.++...++.++|+|.++. +......|+.
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~ 143 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFN 143 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHH
Confidence 556667888999999987 4444444433
No 227
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.98 E-value=2e-05 Score=59.53 Aligned_cols=66 Identities=14% Similarity=0.247 Sum_probs=39.7
Q ss_pred CeEEEEEEcCCCCC--chhc----HHHh--hcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031796 60 NISFTVWDVGGQDK--IRPL----WRHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 60 ~~~~~i~D~~g~~~--~~~~----~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~ 131 (153)
+..+.++||||... .... .... .-..+.+++|+|+...+........+.+. -.+..+|.||+|..
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA-------SPIGSVIITKMDGT 251 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECGGGC
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcc-------cCCcEEEEeccccc
Confidence 46788999999654 2111 1111 12468999999987654443433333332 13467888999976
Q ss_pred C
Q 031796 132 N 132 (153)
Q Consensus 132 ~ 132 (153)
.
T Consensus 252 a 252 (433)
T 3kl4_A 252 A 252 (433)
T ss_dssp S
T ss_pred c
Confidence 3
No 228
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.85 E-value=9.4e-05 Score=55.97 Aligned_cols=80 Identities=19% Similarity=0.135 Sum_probs=45.9
Q ss_pred cCeEEEEEEcCCCCCchh-cHH-----HhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCce-EEEEEeCCCcc
Q 031796 59 KNISFTVWDVGGQDKIRP-LWR-----HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLP 131 (153)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-ii~v~~K~Dl~ 131 (153)
.++.+.++||||...... ... .....++.+++|+|+............+.. ..+ .-+|.||.|..
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~~~~f~~--------~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNE--------ALPLTGVVLTKVDGD 253 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHHHHHHHH--------HSCCCCEEEECTTSS
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHHHHHHhc--------cCCCeEEEEecCCCC
Confidence 356899999999765422 211 123467899999998754433222222211 123 34688999986
Q ss_pred CCC-CHhHHHHHhCCC
Q 031796 132 NAM-NAAEITDKLGLH 146 (153)
Q Consensus 132 ~~~-~~~~~~~~~~~~ 146 (153)
... ....+.+..+++
T Consensus 254 ~~~g~~l~i~~~~~~P 269 (433)
T 2xxa_A 254 ARGGAALSIRHITGKP 269 (433)
T ss_dssp SCCTHHHHHHHHHCCC
T ss_pred ccHHHHHHHHHHHCCC
Confidence 443 234455555543
No 229
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.80 E-value=6.3e-05 Score=54.89 Aligned_cols=24 Identities=42% Similarity=0.602 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhc
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
+.--++++|++|+||||+++.+.+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999988864
No 230
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.77 E-value=1.5e-05 Score=57.03 Aligned_cols=68 Identities=15% Similarity=0.082 Sum_probs=43.2
Q ss_pred EEEcCCCC-CchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHH
Q 031796 65 VWDVGGQD-KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI 139 (153)
Q Consensus 65 i~D~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~ 139 (153)
+-..||+. .........++++|+++.|+|+.++.+... ..+..++ .+.|.++|+||+|+......+.+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~ 71 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQW 71 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHHHHHH
Confidence 34578876 445566777899999999999998866542 1122222 36899999999999864333333
No 231
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.65 E-value=2.9e-05 Score=51.73 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.+++++|++|+|||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999888654
No 232
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.65 E-value=3.3e-05 Score=53.87 Aligned_cols=33 Identities=24% Similarity=0.457 Sum_probs=21.2
Q ss_pred HHHHhhhcccCccEEEEEcCCCCCHHHHHHhHh
Q 031796 6 TKLFSRLFAKKEMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 6 ~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~~~ 38 (153)
.+.+...+..+...++++|++||||||+++.+.
T Consensus 16 ~~~~~~~~~~~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 16 ENLYFQSMASKLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp ----------CCCEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHhcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 344444445556789999999999999999987
No 233
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.56 E-value=0.0008 Score=45.12 Aligned_cols=85 Identities=13% Similarity=0.097 Sum_probs=54.5
Q ss_pred CeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCC-CCCCceEEEEEeCCCccCC--CCH
Q 031796 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNA--MNA 136 (153)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~pii~v~~K~Dl~~~--~~~ 136 (153)
.+.+.++|+|+.. .......+..+|.+++++..+..+ ......+..+.... ..++.++.+|.|+.|.... .+.
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~~~~~~ 150 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMATMLNVL 150 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEEEEHHH
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCchHHHHH
Confidence 4689999999876 334455677899999999876443 44444444332211 1346788999999996433 234
Q ss_pred hHHHHHhCCCcc
Q 031796 137 AEITDKLGLHSL 148 (153)
Q Consensus 137 ~~~~~~~~~~~~ 148 (153)
.+..++++.+-+
T Consensus 151 ~~~l~~~~~~vl 162 (206)
T 4dzz_A 151 KESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHTCCBC
T ss_pred HHHHHHcCCcee
Confidence 555566776554
No 234
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.54 E-value=9.7e-05 Score=56.05 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=21.7
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.+..=|.|+|++++|||+|+|++++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 34455888999999999999999863
No 235
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.54 E-value=4.4e-05 Score=50.72 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.-++++|++|||||||++.+.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999998753
No 236
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.53 E-value=4.5e-05 Score=56.51 Aligned_cols=58 Identities=21% Similarity=0.190 Sum_probs=41.5
Q ss_pred CCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 70 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
.+++|...+..+.+.++++++|+|++++. ......+...+ .+.|+++|+||+|+....
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~--~~~~~~l~~~~-----~~~p~ilV~NK~DL~~~~ 112 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN--GSWLPGLHRFV-----GNNKVLLVGNKADLIPKS 112 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH--HHCCTTHHHHS-----SSSCEEEEEECGGGSCTT
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc--ccHHHHHHHHh-----CCCcEEEEEEChhcCCcc
Confidence 46788899999999999999999998753 11111222221 368999999999996543
No 237
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.51 E-value=4e-05 Score=56.79 Aligned_cols=57 Identities=21% Similarity=0.216 Sum_probs=41.6
Q ss_pred CCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 70 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
.++.|++....+.++++++++|+|++++.+ .....+...+ .+.|+++|+||+|+...
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~~~~l~~~l-----~~~piilV~NK~DLl~~ 113 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG--SFIPGLPRFA-----ADNPILLVGNKADLLPR 113 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG--GCCSSHHHHC-----TTSCEEEEEECGGGSCT
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC--chhhHHHHHh-----CCCCEEEEEEChhcCCC
Confidence 478899999988899999999999998763 1111122221 36899999999999754
No 238
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.50 E-value=5.3e-05 Score=51.18 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHhHhc
Q 031796 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~ 39 (153)
..++++|++|+||||+++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999998865
No 239
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.44 E-value=7.1e-05 Score=49.95 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHhHhcC
Q 031796 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~ 40 (153)
-++++|++|+||||+++.+.+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3789999999999999998753
No 240
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.43 E-value=7.3e-05 Score=50.32 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
--++++|++||||||+++.+.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 45889999999999999988763
No 241
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.41 E-value=7.9e-05 Score=50.57 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.--++++|++|+||||+++.+.+.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 345889999999999999988764
No 242
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.40 E-value=8.7e-05 Score=49.43 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.-.++++|++||||||+++.+.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 346899999999999999998764
No 243
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.40 E-value=8.3e-05 Score=51.17 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
+.--++++|++|+|||||++.+.+.
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3456889999999999999998764
No 244
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.39 E-value=8.1e-05 Score=49.08 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=17.2
Q ss_pred EEEEEcCCCCCHHHHHHhHh
Q 031796 19 RILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~ 38 (153)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999543
No 245
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.38 E-value=0.00013 Score=49.64 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=21.9
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.+..-++++|++|+||||+++.+...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 34556899999999999999998764
No 246
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.35 E-value=0.0001 Score=50.55 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.-.++++|++|+|||||++.+.+.
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346889999999999999988763
No 247
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.34 E-value=0.00017 Score=47.64 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=21.9
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
...-.++++|++|+|||||++.+.+.
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999888654
No 248
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.33 E-value=0.00058 Score=51.53 Aligned_cols=80 Identities=14% Similarity=0.115 Sum_probs=42.9
Q ss_pred CeEEEEEEcCCCCCchh-cHH-----HhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCC
Q 031796 60 NISFTVWDVGGQDKIRP-LWR-----HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 60 ~~~~~i~D~~g~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~ 133 (153)
.+.+.++||||...... ... ...-.++.+++|+|.............+.. . -+ ..-+|.||.|....
T Consensus 180 ~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av~~a~~f~~---~---l~-i~GVIlTKlD~~~~ 252 (425)
T 2ffh_A 180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDE---K---VG-VTGLVLTKLDGDAR 252 (425)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHH---H---TC-CCEEEEESGGGCSS
T ss_pred CCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHHHHHHHHHHh---c---CC-ceEEEEeCcCCccc
Confidence 46799999999764421 111 112257889999998643322222221211 1 11 24567899997543
Q ss_pred C-CHhHHHHHhCCC
Q 031796 134 M-NAAEITDKLGLH 146 (153)
Q Consensus 134 ~-~~~~~~~~~~~~ 146 (153)
. ....+....|.+
T Consensus 253 ~g~alsi~~~~g~P 266 (425)
T 2ffh_A 253 GGAALSARHVTGKP 266 (425)
T ss_dssp CHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHCCC
Confidence 3 233345555554
No 249
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.32 E-value=0.00012 Score=50.91 Aligned_cols=23 Identities=22% Similarity=0.275 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
=.+.++|++|+|||||++.+.+-
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 35889999999999999988764
No 250
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.31 E-value=0.00014 Score=49.38 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=21.4
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhc
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
.+...+.++|++|||||||++.+.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999988754
No 251
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.31 E-value=0.00013 Score=49.50 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
+..-++++|++|+|||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4456899999999999999998753
No 252
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.29 E-value=0.00015 Score=48.74 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHhHhcC
Q 031796 20 ILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 20 i~v~G~~~~GKSsli~~~~~~ 40 (153)
|+++||+|+||+||++++...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999998753
No 253
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.28 E-value=0.00015 Score=47.37 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGE 41 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~ 41 (153)
--+.++|+.|+|||||++.+.+.-
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 468899999999999999987653
No 254
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.27 E-value=0.00017 Score=48.89 Aligned_cols=25 Identities=36% Similarity=0.339 Sum_probs=20.8
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhc
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
.+...+.++|++||||||+++.+.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999988865
No 255
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.27 E-value=0.00033 Score=46.05 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=25.0
Q ss_pred HHHhhhcccCccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 7 ~~~~~~~~~~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.+...........+++.|++|+|||++++.+...
T Consensus 33 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 33 RTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp HHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 3333333345577999999999999999888653
No 256
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.26 E-value=0.00015 Score=49.99 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHhHhcC
Q 031796 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.+.++|++|+|||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988764
No 257
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.21 E-value=0.00019 Score=50.08 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
=.+.++|++|+|||||++.+.+-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999998765
No 258
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.21 E-value=0.00024 Score=47.75 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
...++++|++||||||+++.+.+.
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999999988664
No 259
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.21 E-value=0.00019 Score=46.99 Aligned_cols=22 Identities=41% Similarity=0.457 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHhHhc
Q 031796 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~ 39 (153)
..|+++|++||||||+.+.+.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999988865
No 260
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.21 E-value=0.00019 Score=51.15 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHhHhcC
Q 031796 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~ 40 (153)
-+.++|++|+|||||++.+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988764
No 261
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.20 E-value=0.00023 Score=46.33 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=18.3
Q ss_pred cEEEEEcCCCCCHHHHHHhH
Q 031796 18 MRILMVGLDAAGKTTILYKL 37 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~ 37 (153)
.-|+++|++||||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999988
No 262
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.20 E-value=0.00019 Score=50.71 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHhHhcC
Q 031796 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~ 40 (153)
-+.++|++|+|||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988765
No 263
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.20 E-value=0.00024 Score=48.48 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=20.9
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhc
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
++...|+++|++||||||+.+.+..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999988743
No 264
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.20 E-value=0.00019 Score=48.51 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=20.5
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhc
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
+..-++++|++||||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 445689999999999999999864
No 265
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.20 E-value=0.0002 Score=49.12 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHhHhcC
Q 031796 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.++++|++|+|||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998765
No 266
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.19 E-value=0.0002 Score=49.81 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
-.+.++|++|+|||||++.+.+-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35889999999999999988765
No 267
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.19 E-value=0.00025 Score=47.34 Aligned_cols=23 Identities=30% Similarity=0.229 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhc
Q 031796 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
...|+++|++||||||+.+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999988754
No 268
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.19 E-value=0.00023 Score=49.74 Aligned_cols=39 Identities=18% Similarity=0.137 Sum_probs=20.6
Q ss_pred CchhHHHHHhhhcc---cCccEEEEEcCCCCCHHHHHHhHhc
Q 031796 1 MGLSFTKLFSRLFA---KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 1 ~~~~~~~~~~~~~~---~~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
|++-..+.++++.. .+.+.|.+.|++||||||+.+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 3 MAGDSEQTLQNHQQPNGGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp ------------------CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cccchHHHHHHhhhccCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 33334444554444 3557899999999999999887744
No 269
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.18 E-value=0.00021 Score=47.59 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHhHhc
Q 031796 19 RILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~ 39 (153)
-++++|++|+||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999864
No 270
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.18 E-value=0.00021 Score=50.35 Aligned_cols=22 Identities=23% Similarity=0.375 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHhHhcC
Q 031796 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.+.++|++|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998764
No 271
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.17 E-value=0.00021 Score=50.60 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
=.+.++|++|+|||||++.+.+-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 34789999999999999998764
No 272
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.17 E-value=0.00022 Score=50.39 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=21.3
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhc
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
...-.++++|++||||||+++.+.+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHH
Confidence 4445789999999999999998865
No 273
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.16 E-value=0.00025 Score=47.76 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=20.3
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhc
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
....|+++|++||||||+.+.+..
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999988853
No 274
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.16 E-value=0.00023 Score=46.39 Aligned_cols=21 Identities=33% Similarity=0.357 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHhHhc
Q 031796 19 RILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~ 39 (153)
.|+++|++||||||+.+.+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998853
No 275
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.16 E-value=0.00025 Score=52.35 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCCc
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGEI 42 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~~ 42 (153)
.-.++++|++|+|||||+|.+.+...
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCEEEEECCCCccHHHHHHHHhcccc
Confidence 34789999999999999999987643
No 276
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.15 E-value=0.00027 Score=48.02 Aligned_cols=21 Identities=38% Similarity=0.559 Sum_probs=18.8
Q ss_pred cEEEEEcCCCCCHHHHHHhHh
Q 031796 18 MRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~ 38 (153)
++|+++|++||||||+.+.+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999998884
No 277
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.15 E-value=0.00024 Score=49.16 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHhHhcC
Q 031796 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.+.++|++|+|||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998765
No 278
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.15 E-value=0.00026 Score=49.38 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
-.+.++|++|+|||||++.+.+-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35889999999999999998764
No 279
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.15 E-value=0.00023 Score=50.29 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
-.+.++|++|+|||||++.+.+-
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcC
Confidence 35789999999999999988765
No 280
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.15 E-value=0.00024 Score=49.50 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHhHhcC
Q 031796 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.+.++|++|+|||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998765
No 281
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.14 E-value=0.0003 Score=46.57 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=19.6
Q ss_pred ccEEEEEcCCCCCHHHHHHhHh
Q 031796 17 EMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~ 38 (153)
...|+++|++||||||+.+.+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999998884
No 282
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.14 E-value=0.00027 Score=49.49 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
=.+.++|++|+|||||++.+.+-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999998765
No 283
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.13 E-value=0.00028 Score=46.28 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHhHhc
Q 031796 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~ 39 (153)
.-|++.|++||||||+.+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4589999999999999999875
No 284
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.13 E-value=0.00029 Score=47.89 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCCHHHHHHhHhc
Q 031796 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~ 39 (153)
++|+++|++||||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988843
No 285
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.13 E-value=0.00026 Score=49.61 Aligned_cols=22 Identities=27% Similarity=0.240 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHhHhcC
Q 031796 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.+.++|++|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999875
No 286
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.13 E-value=0.00025 Score=49.93 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHhHhcC
Q 031796 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.+.++|++|+|||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998775
No 287
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.12 E-value=0.00026 Score=49.68 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
-.+.++|++|+|||||++.+.+-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 35789999999999999988765
No 288
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.12 E-value=0.00033 Score=47.18 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=20.4
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhc
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
....++++|++||||||+++.+.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999988854
No 289
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.12 E-value=0.0008 Score=48.63 Aligned_cols=51 Identities=14% Similarity=0.062 Sum_probs=36.0
Q ss_pred HhhcCCCEEEEEEECCCccc-HHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 80 HYFQNTQGLIFVVDSNDRDR-VVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 80 ~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
..+.++|.+++|+|+.++.. ...+..++... .. .++|.++|+||+|+.+..
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~-~~---~~~~~vivlnK~DL~~~~ 133 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLV-EA---NDIQPIICITKMDLIEDQ 133 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHHH-HT---TTCEEEEEEECGGGCCCH
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEECCccCchh
Confidence 45789999999999986653 33333333332 22 478899999999998653
No 290
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.11 E-value=0.00021 Score=48.76 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
=.+.++|++|+|||||++.+.+.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999998876
No 291
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.10 E-value=0.00028 Score=49.80 Aligned_cols=23 Identities=30% Similarity=0.238 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
-.++++|++|+|||||++.+.+-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 35889999999999999998764
No 292
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.10 E-value=0.00042 Score=45.41 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=24.8
Q ss_pred HHHhhhcccCccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 7 ~~~~~~~~~~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.+...........+++.|++|+|||++++.+...
T Consensus 33 ~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 33 RAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp HHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 3333333355678999999999999999887543
No 293
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.10 E-value=0.00028 Score=49.93 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
=.+.++|++|+|||||++.+.+-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999998875
No 294
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.10 E-value=0.00036 Score=47.64 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhc
Q 031796 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
...|.++|++||||||+.+.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999988754
No 295
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.09 E-value=0.00026 Score=47.54 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHhHhcC
Q 031796 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.++++|++|+||||+++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5789999999999999888653
No 296
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.09 E-value=0.00029 Score=50.00 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHhHhcC
Q 031796 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.++++|++|+|||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998765
No 297
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.09 E-value=0.00029 Score=50.26 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
=.++++|++|+|||||++.+.+-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 35789999999999999988764
No 298
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.09 E-value=0.00077 Score=43.03 Aligned_cols=27 Identities=15% Similarity=0.203 Sum_probs=23.1
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
......+++.|++|+|||++++.+...
T Consensus 21 a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred hCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 356678999999999999999988664
No 299
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.08 E-value=0.00033 Score=47.12 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHhHhc
Q 031796 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~ 39 (153)
.+|+++|++||||||+.+.+.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999998865
No 300
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.07 E-value=0.00031 Score=49.71 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHhHhcC
Q 031796 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.+.++|++|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999988764
No 301
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.06 E-value=0.00052 Score=47.76 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=21.8
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhc
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
.+.+.|+++|++||||||+.+.+..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4668999999999999999988853
No 302
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.06 E-value=0.00031 Score=49.36 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHhHhcC
Q 031796 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.+.++|++|+|||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988765
No 303
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.06 E-value=0.00042 Score=45.46 Aligned_cols=23 Identities=13% Similarity=0.368 Sum_probs=19.6
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhc
Q 031796 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
...++++|++||||||+.+.+.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999999988753
No 304
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.05 E-value=0.00048 Score=46.31 Aligned_cols=25 Identities=40% Similarity=0.502 Sum_probs=21.4
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhc
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
.....|+++|++||||||+.+.+..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5567899999999999999988753
No 305
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.04 E-value=0.00043 Score=46.53 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=19.6
Q ss_pred ccEEEEEcCCCCCHHHHHHhHh
Q 031796 17 EMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~ 38 (153)
...|+++|++||||||+.+.+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 4579999999999999998875
No 306
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.04 E-value=0.00038 Score=46.05 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.5
Q ss_pred ccEEEEEcCCCCCHHHHHHhHh
Q 031796 17 EMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~ 38 (153)
...|+++|++||||||+.+.+.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999998885
No 307
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.04 E-value=0.00043 Score=45.98 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=19.8
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhc
Q 031796 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
...|+++|.+||||||+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999988753
No 308
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.03 E-value=0.00036 Score=45.80 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCCHHHHHHhHhc
Q 031796 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~ 39 (153)
.-|++.|++||||||+.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 309
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.03 E-value=0.00036 Score=48.22 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.0
Q ss_pred ccEEEEEcCCCCCHHHHHHhHh
Q 031796 17 EMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~ 38 (153)
.--++++|++|+|||||++.+.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 3458899999999999999876
No 310
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.03 E-value=0.00043 Score=45.81 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=19.7
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhc
Q 031796 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
...|++.|++||||||+.+.+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988743
No 311
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.03 E-value=0.00037 Score=50.35 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=21.0
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhc
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
.+.-.++++|++|+|||||++.+.+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhh
Confidence 3445789999999999999988864
No 312
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.02 E-value=0.00051 Score=45.63 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
+...|+++|++||||||+.+.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999888654
No 313
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.02 E-value=0.00022 Score=49.16 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=15.2
Q ss_pred cEEEEEcCCCCCHHHHHHhHh-cC
Q 031796 18 MRILMVGLDAAGKTTILYKLK-LG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~-~~ 40 (153)
--++++|++|+||||+++.+. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 468899999999999999988 53
No 314
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.02 E-value=0.00056 Score=49.74 Aligned_cols=29 Identities=31% Similarity=0.194 Sum_probs=22.7
Q ss_pred hhhcccCccEEEEEcCCCCCHHHHHHhHh
Q 031796 10 SRLFAKKEMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 10 ~~~~~~~~~~i~v~G~~~~GKSsli~~~~ 38 (153)
......+.+-+.++|++||||||+++.+.
T Consensus 85 ~~~~~~~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 85 GKPEPKVPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp TCCCCCCCEEEEEECCTTSSHHHHHHHHH
T ss_pred ccCCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 33334556789999999999999998774
No 315
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.02 E-value=0.00035 Score=47.64 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHhHhc
Q 031796 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~ 39 (153)
--++++|++|+|||||++.+.+
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999876
No 316
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.01 E-value=0.00035 Score=50.29 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGE 41 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~ 41 (153)
-.++++|++|+|||||++.+.+..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 468899999999999999998754
No 317
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.01 E-value=0.00019 Score=50.73 Aligned_cols=58 Identities=10% Similarity=0.117 Sum_probs=37.5
Q ss_pred cCCCCC-chhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC
Q 031796 68 VGGQDK-IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 68 ~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~ 134 (153)
.||+.. ........+.++|+++.|+|+.++.+..... +. + . +.|.++|+||+|+.+..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l-----l-~k~~iivlNK~DL~~~~ 62 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F-----S-RKETIILLNKVDIADEK 62 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C-----T-TSEEEEEEECGGGSCHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h-----c-CCCcEEEEECccCCCHH
Confidence 467653 3445567789999999999998875543211 01 1 1 68999999999998653
No 318
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.00 E-value=0.00043 Score=48.91 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGE 41 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~ 41 (153)
=.+.++|++|+|||||++.+.+..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999988764
No 319
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.99 E-value=0.00048 Score=46.36 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=20.8
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhc
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
.+..-++++|++|+||||+.+.+.+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4456789999999999999988754
No 320
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.99 E-value=0.00048 Score=46.10 Aligned_cols=27 Identities=30% Similarity=0.265 Sum_probs=22.5
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
..+...|++.|++||||||+.+.+...
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 456678999999999999999888654
No 321
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.98 E-value=0.00051 Score=46.77 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCCHHHHHHhHhc
Q 031796 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~ 39 (153)
+.|+++|+|||||+|...++..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988754
No 322
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.98 E-value=0.00049 Score=46.05 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHhHhc
Q 031796 19 RILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~ 39 (153)
.|++.|.+||||||+.+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999988754
No 323
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.97 E-value=0.00013 Score=52.76 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcCC
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~~ 41 (153)
.-.++++|++|+|||||+|.+.+..
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCEEEEECCCCCCHHHHHHHhcccc
Confidence 3579999999999999999998753
No 324
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.97 E-value=0.00049 Score=46.39 Aligned_cols=22 Identities=27% Similarity=0.170 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHhHhc
Q 031796 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~ 39 (153)
+.+.++|++||||||+.+.+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998865
No 325
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.97 E-value=0.00048 Score=45.65 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHhHhc
Q 031796 19 RILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~ 39 (153)
.|++.|++||||||+.+.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988753
No 326
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.96 E-value=0.00045 Score=49.76 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=19.9
Q ss_pred ccEEEEEcCCCCCHHHHHHhHh
Q 031796 17 EMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~ 38 (153)
...++++|++|+|||||+|.+.
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999999998
No 327
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.95 E-value=0.00047 Score=45.73 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.-++++|++|+||||+++++...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 45889999999999999998754
No 328
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.95 E-value=0.00053 Score=46.62 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCCHHHHHHhHhc
Q 031796 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~ 39 (153)
++|++.|++||||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999988753
No 329
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.95 E-value=0.00062 Score=45.64 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
+...|++.|++||||||+.+.+...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467999999999999999988654
No 330
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.95 E-value=0.0009 Score=47.47 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.-++++|++|+|||||++.+.+.
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 34999999999999999998763
No 331
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.94 E-value=0.00058 Score=50.37 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=21.6
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
...-.++++|++||||||+++.+.+.
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 34448999999999999999988653
No 332
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.94 E-value=0.00055 Score=46.96 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=19.9
Q ss_pred CccEEEEEcCCCCCHHHHHHhHh
Q 031796 16 KEMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~ 38 (153)
+...|+++|++||||||+.+.+.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 34789999999999999998875
No 333
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.94 E-value=0.00062 Score=45.16 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=21.1
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhc
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
.+...++++|.+||||||+.+.+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4557799999999999999988753
No 334
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.94 E-value=0.00059 Score=46.52 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=20.5
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhc
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
+...|+++|.+||||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 447899999999999999988743
No 335
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.94 E-value=0.00057 Score=47.53 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhc
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
+..-+.++|+.||||||+++.+.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999998865
No 336
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.93 E-value=0.00064 Score=45.22 Aligned_cols=23 Identities=35% Similarity=0.320 Sum_probs=20.2
Q ss_pred CccEEEEEcCCCCCHHHHHHhHh
Q 031796 16 KEMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~ 38 (153)
+...|+++|++||||||+.+.+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999998875
No 337
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.93 E-value=0.00056 Score=45.38 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=19.3
Q ss_pred ccEEEEEcCCCCCHHHHHHhHh
Q 031796 17 EMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~ 38 (153)
...|++.|.+||||||+.+.+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999998774
No 338
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.93 E-value=0.00048 Score=50.83 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCC
Q 031796 19 RILMVGLDAAGKTTILYKLKLGE 41 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~ 41 (153)
-+.++|++|+|||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999987753
No 339
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.92 E-value=0.00039 Score=51.31 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.-+++++|++|+|||||++.+.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999988654
No 340
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.92 E-value=0.00037 Score=44.95 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
..-.++++|++|+|||+|++.+.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999988763
No 341
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.92 E-value=0.00056 Score=49.51 Aligned_cols=25 Identities=28% Similarity=0.197 Sum_probs=21.4
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhc
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
.+..-+.++|++|||||||++.+.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4556799999999999999988765
No 342
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.92 E-value=0.00054 Score=49.11 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
-.++++|++|+|||||++.+.+-
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 35889999999999999988765
No 343
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.91 E-value=0.00061 Score=45.85 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhc
Q 031796 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
...|++.|++||||||+.+.+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999988854
No 344
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.91 E-value=0.00056 Score=46.71 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.0
Q ss_pred CccEEEEEcCCCCCHHHHHHhHh
Q 031796 16 KEMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~ 38 (153)
+...|+++|++||||||+.+.+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 44679999999999999998875
No 345
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.91 E-value=0.0011 Score=44.62 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=21.1
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhc
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
.+..-+.++|++|+||||+++.+.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4457799999999999999988754
No 346
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.91 E-value=0.00068 Score=45.76 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=21.8
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.....++++|++|+||||+.+.+.+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34467899999999999999988764
No 347
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.90 E-value=0.0011 Score=46.24 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
..++++|++|+||||+++.+.+.
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 34999999999999999988764
No 348
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.90 E-value=0.0007 Score=45.72 Aligned_cols=24 Identities=38% Similarity=0.436 Sum_probs=20.8
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhc
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
+...|++.|.+||||||+.+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988853
No 349
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.90 E-value=0.0011 Score=45.20 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhc
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
....+++.|++|+|||++++.+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999988864
No 350
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.89 E-value=0.00072 Score=45.59 Aligned_cols=24 Identities=38% Similarity=0.337 Sum_probs=20.8
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhc
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
+...|++.|.+||||||+.+.+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999988753
No 351
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.89 E-value=0.00085 Score=48.37 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=21.4
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhc
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
.+..-+.++|++||||||+++.+.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4456799999999999999988765
No 352
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.88 E-value=0.00065 Score=44.76 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=20.0
Q ss_pred CccEEEEEcCCCCCHHHHHHhHh
Q 031796 16 KEMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~ 38 (153)
+...|+++|++|+||||+.+.+.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 34579999999999999999885
No 353
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.87 E-value=0.00058 Score=50.33 Aligned_cols=23 Identities=35% Similarity=0.351 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCC
Q 031796 19 RILMVGLDAAGKTTILYKLKLGE 41 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~ 41 (153)
-+.++|++|+|||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999987653
No 354
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.86 E-value=0.00068 Score=50.10 Aligned_cols=23 Identities=30% Similarity=0.638 Sum_probs=20.9
Q ss_pred cCccEEEEEcCCCCCHHHHHHhH
Q 031796 15 KKEMRILMVGLDAAGKTTILYKL 37 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~ 37 (153)
++..||+++|.+||||||+++.+
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 56789999999999999998876
No 355
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.86 E-value=0.0008 Score=45.18 Aligned_cols=24 Identities=33% Similarity=0.295 Sum_probs=20.4
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHh
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~ 38 (153)
.+...|++.|++||||||+.+.+.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 445679999999999999998875
No 356
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.86 E-value=0.0006 Score=50.42 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHhHhcC
Q 031796 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~ 40 (153)
-+.++|++|+|||||++.+.+-
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 4789999999999999988764
No 357
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.85 E-value=0.0007 Score=48.39 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=20.5
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhc
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
...-+++.|++||||||+.+.+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999999853
No 358
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.85 E-value=0.00075 Score=43.82 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHhHhc
Q 031796 19 RILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~ 39 (153)
+|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988754
No 359
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.84 E-value=0.00059 Score=44.80 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHhHhc
Q 031796 19 RILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~ 39 (153)
+|+++|++||||||+.+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999988743
No 360
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.84 E-value=0.00063 Score=50.23 Aligned_cols=22 Identities=32% Similarity=0.313 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHhHhcC
Q 031796 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~ 40 (153)
-+.++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 4789999999999999998764
No 361
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.84 E-value=0.00039 Score=50.21 Aligned_cols=23 Identities=39% Similarity=0.371 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
-.+.++|++|+|||||++.+.+-
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTS
T ss_pred CEEEEECCCCchHHHHHHHHHcC
Confidence 46899999999999999888663
No 362
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.84 E-value=0.00062 Score=50.61 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCC
Q 031796 19 RILMVGLDAAGKTTILYKLKLGE 41 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~ 41 (153)
-+.++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999987743
No 363
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.83 E-value=0.00064 Score=50.24 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHhHhcC
Q 031796 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~ 40 (153)
-+.++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 4789999999999999998775
No 364
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.82 E-value=0.00067 Score=49.47 Aligned_cols=24 Identities=21% Similarity=0.247 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.-.++++|++|+|||||++.+.+.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999998764
No 365
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.81 E-value=0.00093 Score=46.73 Aligned_cols=24 Identities=29% Similarity=0.221 Sum_probs=21.1
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHh
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~ 38 (153)
.+...|.++|++||||||+.+.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 445689999999999999999887
No 366
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.81 E-value=0.00095 Score=49.48 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=21.2
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhc
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
...-.++++|++||||||+++.+.+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3445699999999999999998875
No 367
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.81 E-value=0.0007 Score=50.23 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCC
Q 031796 19 RILMVGLDAAGKTTILYKLKLGE 41 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~ 41 (153)
-+.++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47899999999999999987753
No 368
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.80 E-value=0.00032 Score=46.37 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHhHhcC
Q 031796 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.+.++|++|||||||++.+.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999988653
No 369
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.80 E-value=0.00067 Score=50.07 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
..-.++++|++|+||||+++.+.+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4457999999999999999998764
No 370
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.80 E-value=0.0007 Score=47.46 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHhHhc
Q 031796 19 RILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~ 39 (153)
-++++|++||||||+.+.+..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999988753
No 371
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.79 E-value=0.0011 Score=49.86 Aligned_cols=32 Identities=34% Similarity=0.458 Sum_probs=23.7
Q ss_pred HhhhcccCccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 9 ~~~~~~~~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
+........--++++|++||||||+++.+.+.
T Consensus 159 L~~l~~~~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 159 FRRLIKRPHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp HHHHHTSSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHHHHhcCCeEEEECCCCCCHHHHHHHHHhh
Confidence 33333334446899999999999999998763
No 372
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.79 E-value=0.00073 Score=50.11 Aligned_cols=22 Identities=27% Similarity=0.310 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHhHhcC
Q 031796 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~ 40 (153)
-+.++|++|+|||||++.+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 4789999999999999998764
No 373
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.77 E-value=0.00088 Score=45.92 Aligned_cols=22 Identities=36% Similarity=0.391 Sum_probs=19.0
Q ss_pred cEEEEEcCCCCCHHHHHHhHhc
Q 031796 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~ 39 (153)
+.|++.|++||||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999988753
No 374
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.77 E-value=0.00074 Score=48.74 Aligned_cols=24 Identities=42% Similarity=0.566 Sum_probs=20.4
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhc
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
+.-.++++|++||||||+++.+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 345789999999999999988863
No 375
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.76 E-value=0.0011 Score=45.77 Aligned_cols=25 Identities=36% Similarity=0.400 Sum_probs=21.3
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhc
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
.....|+++|.+||||||+.+.+..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999988753
No 376
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.76 E-value=0.00085 Score=44.25 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHhHhc
Q 031796 19 RILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~ 39 (153)
-.+++|++|+||||++..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 568899999999999998853
No 377
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.76 E-value=0.0016 Score=46.07 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHhHhcC
Q 031796 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.++++|++|+||||+++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 4999999999999999988764
No 378
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.75 E-value=0.0016 Score=46.02 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=22.2
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.....+++.|++|+|||++++.+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45677999999999999999998653
No 379
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.75 E-value=0.00077 Score=49.09 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
-.++++|++|+||||+++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999988653
No 380
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.74 E-value=0.00099 Score=44.14 Aligned_cols=21 Identities=43% Similarity=0.444 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHhHhc
Q 031796 19 RILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~ 39 (153)
.|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988854
No 381
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.74 E-value=0.0014 Score=46.06 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=22.9
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
......+++.|++|+|||++++.+...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 456678999999999999999988653
No 382
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.74 E-value=0.00079 Score=48.52 Aligned_cols=22 Identities=45% Similarity=0.599 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCCHHHHHHhHhc
Q 031796 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~ 39 (153)
--++++|++|+||||+++.+.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999988864
No 383
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.72 E-value=0.00083 Score=46.26 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=21.8
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.+..-+.+.|+.||||||+++.+.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 44467999999999999999988654
No 384
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.71 E-value=0.0011 Score=47.48 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=21.0
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHh
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~ 38 (153)
..+...|.+.|++||||||+++.+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3556789999999999999987764
No 385
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.71 E-value=0.00084 Score=51.83 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
....++++|++||||||+++.+.+.
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3445999999999999999998764
No 386
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.70 E-value=0.0012 Score=43.58 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=19.7
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhc
Q 031796 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
..-+.++|++||||||++.++..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999988864
No 387
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.70 E-value=0.0011 Score=45.00 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhc
Q 031796 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
++.|++.|.+||||||+.+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999988854
No 388
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.69 E-value=0.00075 Score=44.42 Aligned_cols=23 Identities=26% Similarity=0.216 Sum_probs=15.6
Q ss_pred CccEEEEEcCCCCCHHHHHHhHh
Q 031796 16 KEMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~ 38 (153)
+...|++.|.+||||||+.+.+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999998875
No 389
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.69 E-value=0.00093 Score=46.62 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
...++++|++|+|||++++.+.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 456999999999999999988653
No 390
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.69 E-value=0.0012 Score=43.50 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=20.4
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhc
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
+...++++|.+||||||+.+.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999988754
No 391
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.68 E-value=0.0087 Score=43.26 Aligned_cols=26 Identities=27% Similarity=0.259 Sum_probs=21.4
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.....+++.|++|+|||++++.+...
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 34457999999999999999988543
No 392
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.68 E-value=0.00095 Score=49.82 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHhHhcC
Q 031796 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.+.++|++|+|||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4889999999999999988764
No 393
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.67 E-value=0.0012 Score=43.88 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHhHhc
Q 031796 19 RILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~ 39 (153)
-|++.|++||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999988854
No 394
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.67 E-value=0.00058 Score=50.20 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHhHhcC
Q 031796 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~ 40 (153)
-+.++|++|+|||||++.+.+-
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 5789999999999999998765
No 395
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.67 E-value=0.001 Score=45.30 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCCHHHHHHhHhc
Q 031796 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~ 39 (153)
--++++|++|+|||||++.+.+
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4588899999999999988863
No 396
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.66 E-value=0.0013 Score=45.72 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=20.2
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHh
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~ 38 (153)
.+++.+.+.|++|+||||+.+.+.
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 456889999999999999998875
No 397
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.65 E-value=0.00076 Score=47.16 Aligned_cols=25 Identities=40% Similarity=0.432 Sum_probs=20.9
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhc
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
.....++++|++||||||+.+.+..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999988754
No 398
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.65 E-value=0.0013 Score=44.06 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
..+++.|++|+|||++++.+.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999887653
No 399
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.63 E-value=0.0015 Score=43.23 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCCHHHHHHhHhc
Q 031796 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~ 39 (153)
..|++.|++||||||+.+.+..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999988753
No 400
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.63 E-value=0.0018 Score=43.38 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHhHhc
Q 031796 19 RILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~ 39 (153)
.+++.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999988864
No 401
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.63 E-value=0.0012 Score=43.03 Aligned_cols=22 Identities=36% Similarity=0.404 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCCHHHHHHhHhc
Q 031796 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~ 39 (153)
..|++.|.+||||||+.+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999988753
No 402
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.61 E-value=0.0013 Score=46.10 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=19.7
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhc
Q 031796 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
...|+++|.+||||||+.+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999999988754
No 403
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.59 E-value=0.0013 Score=43.40 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHhHhc
Q 031796 19 RILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~ 39 (153)
.|+++|.+||||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999887743
No 404
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.58 E-value=0.0015 Score=42.50 Aligned_cols=22 Identities=23% Similarity=0.578 Sum_probs=19.0
Q ss_pred cEEEEEcCCCCCHHHHHHhHhc
Q 031796 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~ 39 (153)
-.|++.|.+||||||+.+.+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999988743
No 405
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.58 E-value=0.00048 Score=46.57 Aligned_cols=21 Identities=43% Similarity=0.542 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHhHhc
Q 031796 19 RILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~ 39 (153)
-|++.|++||||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999988754
No 406
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.57 E-value=0.001 Score=47.54 Aligned_cols=25 Identities=16% Similarity=0.001 Sum_probs=20.6
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhc
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
+.+.-+++.|++|+|||++++.+..
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3446688889999999999998864
No 407
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.57 E-value=0.0019 Score=43.99 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=19.3
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhc
Q 031796 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
+-.+++.||+|+|||+++.++.+
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHH
Confidence 34599999999999999877754
No 408
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.56 E-value=0.00058 Score=50.33 Aligned_cols=23 Identities=30% Similarity=0.353 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCC
Q 031796 19 RILMVGLDAAGKTTILYKLKLGE 41 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~ 41 (153)
-+.++|++|+|||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999987753
No 409
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.55 E-value=0.0015 Score=42.00 Aligned_cols=19 Identities=26% Similarity=0.574 Sum_probs=16.8
Q ss_pred EEEEcCCCCCHHHHHHhHh
Q 031796 20 ILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 20 i~v~G~~~~GKSsli~~~~ 38 (153)
.+++|+.|+||||++.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5788999999999998874
No 410
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.55 E-value=0.0017 Score=46.25 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=20.9
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHh
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~ 38 (153)
.+.+.|++.|++||||||+.+.+.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 446789999999999999998875
No 411
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.54 E-value=0.0011 Score=48.10 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHhHhcC
Q 031796 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~ 40 (153)
-++++|+.|+||||+++.+.+.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 4678899999999999999865
No 412
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.0013 Score=50.21 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
..-.++++|++|+|||||++.+.+.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 4457999999999999999988764
No 413
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.51 E-value=0.0014 Score=48.43 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=19.6
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhc
Q 031796 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
.--++++|++||||||+++.+.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 34688999999999999988864
No 414
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.50 E-value=0.0026 Score=48.14 Aligned_cols=32 Identities=22% Similarity=0.214 Sum_probs=25.3
Q ss_pred HhhhcccCccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 9 ~~~~~~~~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
|.+.--..+.-+++.||+|+|||++++++.+.
T Consensus 207 f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 207 FKDMGIRAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp HHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 34444456678999999999999999998754
No 415
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.49 E-value=0.0021 Score=44.15 Aligned_cols=21 Identities=33% Similarity=0.311 Sum_probs=17.4
Q ss_pred EEEEEcCCCCCHHHHHHhHhc
Q 031796 19 RILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~ 39 (153)
-|+++|++||||+|...++..
T Consensus 31 iI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 366789999999999887753
No 416
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.49 E-value=0.0028 Score=45.42 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=21.9
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.....+++.|++|+|||++++.+.+.
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHH
Confidence 44567999999999999999988753
No 417
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.48 E-value=0.0015 Score=46.59 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=18.8
Q ss_pred cEEEEEcCCCCCHHHHHHhHhc
Q 031796 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~ 39 (153)
--++++|++|+|||||+..+.+
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 3578999999999999988754
No 418
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.48 E-value=0.0021 Score=44.66 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=21.2
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhc
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
.....+++.|++|+|||++++.+..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3446799999999999999998865
No 419
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.47 E-value=0.0014 Score=41.65 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=22.1
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.....+++.|++|+|||++++.+...
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHh
Confidence 45678999999999999999887654
No 420
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.46 E-value=0.0023 Score=45.51 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
....+++.|++|+|||++++.+.+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4578999999999999999988653
No 421
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.45 E-value=0.0017 Score=43.88 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhc
Q 031796 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
.--++++|++|+|||||+..+..
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999876
No 422
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.44 E-value=0.0028 Score=48.34 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=22.0
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhc
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
....-+++++|++|+|||++++.+..
T Consensus 198 r~~~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 198 RRTKNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CSSSCEEEEESCTTTTTHHHHHHHHH
T ss_pred ccCCCCeEEECCCCCCHHHHHHHHHH
Confidence 35567899999999999999988754
No 423
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.44 E-value=0.0017 Score=44.02 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCCHHHHHHhHhc
Q 031796 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~ 39 (153)
--+++.|++|+|||++++.+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999988864
No 424
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.43 E-value=0.0016 Score=50.00 Aligned_cols=23 Identities=48% Similarity=0.632 Sum_probs=19.6
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhc
Q 031796 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
.--++++|++|+||||+++.+.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 34688999999999999988854
No 425
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.42 E-value=0.0017 Score=45.55 Aligned_cols=27 Identities=33% Similarity=0.295 Sum_probs=21.0
Q ss_pred cccCccEEEEEcCCCCCHHHHHHhHhc
Q 031796 13 FAKKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
...+...|++.|..||||||+++.+..
T Consensus 20 ~~~~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 20 EGTRIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp ---CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHH
Confidence 345567899999999999999988754
No 426
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.40 E-value=0.0024 Score=45.60 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=20.6
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhc
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
.....+++.|++|+|||++++.+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4456799999999999999976643
No 427
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.40 E-value=0.0019 Score=44.37 Aligned_cols=24 Identities=29% Similarity=0.195 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhc
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
..--++++|++|+|||||+..+..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 345688999999999999999876
No 428
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.40 E-value=0.0019 Score=47.41 Aligned_cols=25 Identities=28% Similarity=0.255 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
+-=++.++|++|+|||||++.+.+.
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999998875
No 429
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.38 E-value=0.002 Score=50.00 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
=.+.++|++|+|||||++.+.+.
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998774
No 430
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.37 E-value=0.0018 Score=50.27 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHhHhcC
Q 031796 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~ 40 (153)
-+.++|++|+|||||++.+.+.
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999998774
No 431
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.37 E-value=0.0034 Score=47.52 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=25.8
Q ss_pred HHhhhcccCccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 8 LFSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 8 ~~~~~~~~~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.|.+.--..+.-+++.||+|+|||++++++.+.
T Consensus 206 ~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 206 IFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp HHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 344444456678999999999999999998753
No 432
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.36 E-value=0.0026 Score=43.07 Aligned_cols=25 Identities=32% Similarity=0.607 Sum_probs=20.5
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhc
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
.+..-|+++|.+|+||||+.+.+..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3446789999999999999988754
No 433
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.33 E-value=0.0026 Score=43.87 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhc
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
+..-|++.|++||||||+++.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999988754
No 434
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.33 E-value=0.0037 Score=47.19 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=22.6
Q ss_pred ccCccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 14 AKKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 14 ~~~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
-..+.-+++.||+|+|||++++++.+.
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 345567999999999999999998753
No 435
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.32 E-value=0.0021 Score=46.40 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhc
Q 031796 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
.-.+++.|++|+|||++++.+.+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999998865
No 436
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.32 E-value=0.002 Score=45.14 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=19.9
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhc
Q 031796 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
.-.|+++|++|+||||+.+.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988753
No 437
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.30 E-value=0.0025 Score=45.45 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCCHHHHHHhHhc
Q 031796 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~ 39 (153)
.-|+++|.+||||||+.+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999998865
No 438
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.29 E-value=0.0023 Score=50.11 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
-.+.++|++|+|||||++.+.+-
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhc
Confidence 46899999999999999988764
No 439
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.29 E-value=0.0014 Score=46.89 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=17.9
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhc
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
.+.+-|.+.|++||||||+.+.+..
T Consensus 3 ~~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 3 KKHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3556799999999999999988753
No 440
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.28 E-value=0.0022 Score=49.14 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCCHHHHHHhHhc
Q 031796 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~ 39 (153)
--+.++|++|+|||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 4578999999999999998865
No 441
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.25 E-value=0.0037 Score=45.48 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHhHhc
Q 031796 19 RILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~ 39 (153)
.+++.|++|+||||+++.+.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999998866
No 442
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.25 E-value=0.0024 Score=50.31 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
=-+.++|++|+|||||++.+.+.
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCChHHHHHHHHhcC
Confidence 35889999999999999998764
No 443
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.0021 Score=46.66 Aligned_cols=28 Identities=7% Similarity=0.109 Sum_probs=23.6
Q ss_pred cccCccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 13 FAKKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
...+.-.+++.|++|+|||++++.+...
T Consensus 41 ~~~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 41 MSSQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp HTTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3567788999999999999999988653
No 444
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.24 E-value=0.003 Score=42.47 Aligned_cols=25 Identities=32% Similarity=0.291 Sum_probs=21.2
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhc
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
-..+.|.++|..||||||+.+.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999988754
No 445
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.23 E-value=0.0055 Score=44.17 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhc
Q 031796 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
...+++.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999988765
No 446
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.22 E-value=0.0035 Score=46.91 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=25.6
Q ss_pred HHhhhcccCccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 8 LFSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 8 ~~~~~~~~~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
+|.+.--..+.-+++.||+|+|||.+++++.+.
T Consensus 173 ~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 173 LFESLGIAQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp HHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred HHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 344444455678999999999999999998753
No 447
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.22 E-value=0.0027 Score=49.75 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
-.+.++|++|+|||||++.+.+-
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999988764
No 448
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.21 E-value=0.0049 Score=44.64 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
-.+++.|++|+|||++++.+...
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 34999999999999999888654
No 449
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.21 E-value=0.0037 Score=43.09 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=21.5
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhc
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
.+...|.++|++|+||||+.+.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 5567899999999999999988764
No 450
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.20 E-value=0.0034 Score=46.61 Aligned_cols=25 Identities=32% Similarity=0.223 Sum_probs=21.1
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhc
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
...-.++++|++|+||||+++.+.+
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3445789999999999999998875
No 451
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.20 E-value=0.0027 Score=44.90 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCCHHHHHHhHhc
Q 031796 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~ 39 (153)
--++++|++|+|||||+..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4588999999999999988864
No 452
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.20 E-value=0.0028 Score=46.82 Aligned_cols=19 Identities=21% Similarity=0.487 Sum_probs=17.0
Q ss_pred EEEEcCCCCCHHHHHHhHh
Q 031796 20 ILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 20 i~v~G~~~~GKSsli~~~~ 38 (153)
.+++|++|+||||+++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5589999999999999875
No 453
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.18 E-value=0.0027 Score=46.42 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=21.7
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
...-.+++.|++|+||||+++.+.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 33467999999999999999988753
No 454
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.17 E-value=0.0028 Score=45.03 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhc
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
....+++.|++|+|||++++.+..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999988864
No 455
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.17 E-value=0.0029 Score=47.90 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
+-=++.++|++|+|||||++.+.+.
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3457899999999999999988775
No 456
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.16 E-value=0.0023 Score=50.08 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
-.+.++|++|+|||||++.+.+-
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTS
T ss_pred CEEEEECCCCChHHHHHHHHhcC
Confidence 46899999999999999887654
No 457
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.13 E-value=0.0032 Score=49.60 Aligned_cols=23 Identities=35% Similarity=0.353 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
=.+.++|++|+|||||++.+.+.
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCChHHHHHHHHhCC
Confidence 46899999999999999988764
No 458
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=96.12 E-value=0.057 Score=36.91 Aligned_cols=85 Identities=15% Similarity=0.148 Sum_probs=58.7
Q ss_pred eEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCCCHhHHH
Q 031796 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEIT 140 (153)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~~~~~~~ 140 (153)
+.+.++|+|+.... .....+..+|.+++++..+ ..+.......+..+. ........+-+|.|+.+.......+++.
T Consensus 119 yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~-~~~~~~~~~~~v~N~~~~~~~~~~~~~~ 194 (245)
T 3ea0_A 119 YDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCK-EFEKPISRIEIILNRADTNSRITSDEIE 194 (245)
T ss_dssp CSEEEEEEESSCCT--THHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHH-TCSSCCSCEEEEEESTTSCTTSCHHHHH
T ss_pred CCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHH-HhCCCccceEEEEecCCCCCCCCHHHHH
Confidence 56999999986533 4445678899999999865 455555555554443 3222345688899999977666677888
Q ss_pred HHhCCCccc
Q 031796 141 DKLGLHSLR 149 (153)
Q Consensus 141 ~~~~~~~~~ 149 (153)
+.++.+-+.
T Consensus 195 ~~~~~~v~~ 203 (245)
T 3ea0_A 195 KVIGRPISK 203 (245)
T ss_dssp HHHTSCEEE
T ss_pred HHhCCCeEE
Confidence 888876553
No 459
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.12 E-value=0.0038 Score=45.37 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCCHHHHHHhHhc
Q 031796 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~ 39 (153)
..++++|++||||||+...+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988754
No 460
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.11 E-value=0.0025 Score=50.06 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
-.+.++|++|+|||||++.+.+-
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999988764
No 461
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.11 E-value=0.0036 Score=42.40 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
...-++++|++|+|||++...+...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3456899999999999999888654
No 462
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.10 E-value=0.0046 Score=45.33 Aligned_cols=22 Identities=36% Similarity=0.341 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHhHhcC
Q 031796 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.+++.|++|+||||+++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988653
No 463
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.09 E-value=0.0032 Score=48.95 Aligned_cols=23 Identities=30% Similarity=0.187 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHhHhcCC
Q 031796 19 RILMVGLDAAGKTTILYKLKLGE 41 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~~ 41 (153)
.+.++|++|+|||||++.+.+..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999987753
No 464
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.09 E-value=0.0028 Score=49.84 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
-.+.++|++|+|||||++.+.+-
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 46899999999999999988764
No 465
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.06 E-value=0.0055 Score=44.54 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHhHhcC
Q 031796 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.+++.|++|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999888653
No 466
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.06 E-value=0.0045 Score=44.73 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
...+++.|++|+|||++++.+...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 467999999999999999988653
No 467
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.06 E-value=0.0071 Score=42.27 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=22.3
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.....+++.|++|+|||++++.+...
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 44578999999999999999988654
No 468
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.05 E-value=0.0031 Score=49.44 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
-.+.++|++|+|||||++.+.+-
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999888653
No 469
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.04 E-value=0.0046 Score=44.82 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
...+++.|++|+|||++++.+...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 467999999999999999988753
No 470
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.03 E-value=0.004 Score=48.38 Aligned_cols=24 Identities=38% Similarity=0.297 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGE 41 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~ 41 (153)
=.+.++|+.|+|||||++.+.+..
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458899999999999999998753
No 471
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.03 E-value=0.0036 Score=49.34 Aligned_cols=24 Identities=38% Similarity=0.297 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcCC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLGE 41 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~~ 41 (153)
=.+.++|++|+|||||++.+.+..
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999988753
No 472
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=96.02 E-value=0.0042 Score=46.53 Aligned_cols=24 Identities=29% Similarity=0.668 Sum_probs=21.3
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHh
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~ 38 (153)
.+.+|++++|...|||||+++.+.
T Consensus 38 ~~~~klLLLG~geSGKSTi~KQmk 61 (402)
T 1azs_C 38 RATHRLLLLGAGESGKSTIVKQMR 61 (402)
T ss_dssp TTEEEEEEEESTTSSHHHHHHHHH
T ss_pred hccceEEEecCCCCchhhHHHHHH
Confidence 567999999999999999998763
No 473
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.02 E-value=0.0042 Score=41.98 Aligned_cols=19 Identities=26% Similarity=0.574 Sum_probs=16.5
Q ss_pred EEEEcCCCCCHHHHHHhHh
Q 031796 20 ILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 20 i~v~G~~~~GKSsli~~~~ 38 (153)
.+++|+.|+||||++.++.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 5678999999999998873
No 474
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.02 E-value=0.0019 Score=45.18 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=19.9
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhc
Q 031796 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
...+++.|++|+|||++++.+..
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHH
Confidence 34589999999999999998865
No 475
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.01 E-value=0.004 Score=42.73 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=17.8
Q ss_pred cEEEEEcCCCCCHHHHHHhHh
Q 031796 18 MRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~ 38 (153)
--++++|++|+|||||+..+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 457889999999999977764
No 476
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.99 E-value=0.0047 Score=44.05 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
-.+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999887653
No 477
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.99 E-value=0.0072 Score=45.62 Aligned_cols=32 Identities=16% Similarity=0.242 Sum_probs=25.1
Q ss_pred HhhhcccCccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 9 ~~~~~~~~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
|.+.-...+.-+++.||+|+|||++++++.+.
T Consensus 208 f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 208 YEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp HHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred HHhCCCCCCCCCceECCCCchHHHHHHHHHHH
Confidence 33333455678999999999999999998754
No 478
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.98 E-value=0.0055 Score=43.97 Aligned_cols=124 Identities=18% Similarity=0.216 Sum_probs=64.0
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhc------C-Ccc--c--c-cCc-----------eeeEEEEE-----------EEcCe
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKL------G-EIV--T--T-IPT-----------IGFNVETV-----------EYKNI 61 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~------~-~~~--~--~-~~t-----------~~~~~~~~-----------~~~~~ 61 (153)
+.-.++++|++|+||||++..+.. + +.. . . .+. .+...... ...+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~ 183 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY 183 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence 456799999999999999887742 1 110 0 0 000 00000000 01346
Q ss_pred EEEEEEcCCCCCchhc-H---HHhhc--CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccCCC-
Q 031796 62 SFTVWDVGGQDKIRPL-W---RHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM- 134 (153)
Q Consensus 62 ~~~i~D~~g~~~~~~~-~---~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii~v~~K~Dl~~~~- 134 (153)
.+.++||+|....... . ...+. ..+.+++|+|.+.. ...+......+ .. -+. .-+|.||.|.....
T Consensus 184 dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~-~~---l~~-~giVltk~D~~~~~g 256 (296)
T 2px0_A 184 DHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRF-SS---VPV-NQYIFTKIDETTSLG 256 (296)
T ss_dssp SEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTT-SS---SCC-CEEEEECTTTCSCCH
T ss_pred CEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHH-hc---CCC-CEEEEeCCCcccchh
Confidence 7999999997654321 1 12232 35778999987632 22232222211 11 122 34556999976432
Q ss_pred CHhHHHHHhCCC
Q 031796 135 NAAEITDKLGLH 146 (153)
Q Consensus 135 ~~~~~~~~~~~~ 146 (153)
....+....+++
T Consensus 257 ~~~~~~~~~~~p 268 (296)
T 2px0_A 257 SVFNILAESKIG 268 (296)
T ss_dssp HHHHHHHTCSCC
T ss_pred HHHHHHHHHCcC
Confidence 234455555543
No 479
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.97 E-value=0.0083 Score=44.19 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=20.4
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhc
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
....+++++|++|+||||+.+.+..
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHH
Confidence 3446799999999999999976643
No 480
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.97 E-value=0.0049 Score=41.22 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHhHhc
Q 031796 19 RILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 19 ~i~v~G~~~~GKSsli~~~~~ 39 (153)
.|.+.|++||||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988754
No 481
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.93 E-value=0.0076 Score=46.14 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 17 EMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
+..++++|++|+|||++++.+.+.
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999998763
No 482
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.93 E-value=0.008 Score=43.90 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHhHhc
Q 031796 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~ 39 (153)
..+++.|++|+|||++++.+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999988854
No 483
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.93 E-value=0.0062 Score=44.70 Aligned_cols=26 Identities=27% Similarity=0.207 Sum_probs=22.3
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.....+++.|++|+|||++++.+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999988653
No 484
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.91 E-value=0.0053 Score=45.25 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhc
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
....+++.|++|+|||++++.+..
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999988864
No 485
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.90 E-value=0.0051 Score=40.93 Aligned_cols=21 Identities=29% Similarity=0.227 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHhHhcC
Q 031796 20 ILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 20 i~v~G~~~~GKSsli~~~~~~ 40 (153)
++++|.++||||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999998754
No 486
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.90 E-value=0.0039 Score=45.59 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=21.9
Q ss_pred cCccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
...-.+++.|++|+|||++++.+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 44568999999999999999988653
No 487
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.90 E-value=0.0048 Score=45.16 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCCHHHHHHhHhc
Q 031796 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~ 39 (153)
.-|+++|++||||||+...+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 3688999999999999988754
No 488
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.89 E-value=0.0072 Score=48.72 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=24.9
Q ss_pred HHHhhhcccCccEEEEEcCCCCCHHHHHHhHhc
Q 031796 7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 7 ~~~~~~~~~~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
.+..-......-+++++|++|+|||++++.+..
T Consensus 191 ~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~ 223 (758)
T 3pxi_A 191 RVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQ 223 (758)
T ss_dssp HHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHH
T ss_pred HHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHH
Confidence 333333345667899999999999999988754
No 489
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.89 E-value=0.0082 Score=48.35 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=25.4
Q ss_pred HHHhhhcccCccEEEEEcCCCCCHHHHHHhHhc
Q 031796 7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 7 ~~~~~~~~~~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
.+.........-.++++|++|+|||++++.+..
T Consensus 197 ~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 197 RAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp HHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHH
Confidence 334444445678899999999999999988864
No 490
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.89 E-value=0.0064 Score=46.27 Aligned_cols=32 Identities=25% Similarity=0.223 Sum_probs=25.2
Q ss_pred HhhhcccCccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 9 ~~~~~~~~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
|.+.--..+.-+++.||+|+|||++++++.+.
T Consensus 235 f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 235 FATLGIDPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp HHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred HHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 34333456788999999999999999998653
No 491
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.88 E-value=0.0046 Score=48.76 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHhHhcCC
Q 031796 20 ILMVGLDAAGKTTILYKLKLGE 41 (153)
Q Consensus 20 i~v~G~~~~GKSsli~~~~~~~ 41 (153)
+.++|++|+|||||++.+.+-.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7899999999999999987753
No 492
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.88 E-value=0.0065 Score=44.44 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCCHHHHHHhHhc
Q 031796 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~ 39 (153)
.-|+|+|++|||||+|...+..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988864
No 493
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.85 E-value=0.0075 Score=44.21 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
....+++.|++|+|||++++.+...
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999888653
No 494
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.84 E-value=0.0048 Score=45.28 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhcC
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
..--+.++|++|+|||||++.+...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3345789999999999999988754
No 495
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.83 E-value=0.0069 Score=45.48 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=20.4
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhc
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
...-|+++|.+||||||+.+++..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 445688999999999999999865
No 496
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.83 E-value=0.0047 Score=46.72 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHhHhc
Q 031796 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
.-.+++.|++|+|||+|++.+.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988865
No 497
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.82 E-value=0.0063 Score=42.11 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=19.8
Q ss_pred CccEEEEEcCCCCCHHHHHHhHhc
Q 031796 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~v~G~~~~GKSsli~~~~~ 39 (153)
..+++.++|++||||||+.+++..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 458999999999999999988743
No 498
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.82 E-value=0.082 Score=37.66 Aligned_cols=85 Identities=12% Similarity=0.151 Sum_probs=54.3
Q ss_pred CeEEEEEEcCCCCCchhcHHHhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEE-EEEeCCCccCCCCHhH
Q 031796 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL-VFANKQDLPNAMNAAE 138 (153)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-~v~~K~Dl~~~~~~~~ 138 (153)
.+.+.++|+|+....... ...+..+|.++++...+ ..+.......+..+.......+.+++ +|.|+.+.. ...++
T Consensus 156 ~yD~ViiD~p~~~~~~~~-~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~--~~~~~ 231 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGGF-AAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT--DEVDR 231 (307)
T ss_dssp SCSEEEEEECCSSCCGGG-GGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC--HHHHH
T ss_pred cCCEEEEeCCCccchHHH-HHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH--HHHHH
Confidence 367899999876543322 23567899999999764 44555555544444332223456655 899999843 34667
Q ss_pred HHHHhCCCcc
Q 031796 139 ITDKLGLHSL 148 (153)
Q Consensus 139 ~~~~~~~~~~ 148 (153)
+.+.++.+.+
T Consensus 232 ~~~~~g~~v~ 241 (307)
T 3end_A 232 FCKETNFRRL 241 (307)
T ss_dssp HHHHHTCCEE
T ss_pred HHHHcCCCce
Confidence 7777876654
No 499
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.82 E-value=0.0055 Score=44.43 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCCHHHHHHhHhcC
Q 031796 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~~ 40 (153)
.-++++||+|||||++...+...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 34788999999999999888643
No 500
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.82 E-value=0.0052 Score=44.35 Aligned_cols=22 Identities=41% Similarity=0.536 Sum_probs=18.7
Q ss_pred cEEEEEcCCCCCHHHHHHhHhc
Q 031796 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~v~G~~~~GKSsli~~~~~ 39 (153)
--++++|++|+||||++..+.+
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHH
Confidence 4588999999999999987753
Done!