Query 031797
Match_columns 153
No_of_seqs 117 out of 1559
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 05:29:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031797.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031797hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00223 ADP-ribosylation fact 100.0 6.3E-32 1.4E-36 182.1 16.9 153 1-153 1-153 (181)
2 PTZ00133 ADP-ribosylation fact 100.0 4E-31 8.7E-36 178.4 16.7 152 1-152 1-152 (182)
3 KOG0084 GTPase Rab1/YPT1, smal 100.0 2.5E-31 5.4E-36 175.0 11.9 131 15-146 7-147 (205)
4 smart00177 ARF ARF-like small 100.0 6.4E-30 1.4E-34 171.5 15.9 141 13-153 9-149 (175)
5 KOG0070 GTP-binding ADP-ribosy 100.0 1E-29 2.2E-34 166.1 12.6 153 1-153 1-153 (181)
6 cd04149 Arf6 Arf6 subfamily. 100.0 4.5E-29 9.7E-34 166.4 15.1 138 13-150 5-142 (168)
7 PF00025 Arf: ADP-ribosylation 100.0 9.3E-29 2E-33 165.9 16.4 149 5-153 1-151 (175)
8 cd04150 Arf1_5_like Arf1-Arf5- 100.0 1.5E-28 3.3E-33 162.5 15.2 135 18-152 1-135 (159)
9 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 1.1E-28 2.4E-33 162.2 12.6 135 15-149 20-164 (221)
10 KOG0071 GTP-binding ADP-ribosy 100.0 4.1E-28 8.8E-33 151.8 14.2 153 1-153 1-153 (180)
11 KOG0092 GTPase Rab5/YPT51 and 100.0 8.6E-29 1.9E-33 162.4 11.6 136 14-150 2-147 (200)
12 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 2.8E-27 6E-32 158.6 16.6 142 8-149 6-147 (174)
13 KOG0073 GTP-binding ADP-ribosy 100.0 1.7E-27 3.7E-32 152.5 14.1 149 5-153 4-153 (185)
14 cd04154 Arl2 Arl2 subfamily. 100.0 7.3E-27 1.6E-31 156.3 16.0 134 13-146 10-143 (173)
15 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 8.5E-27 1.8E-31 154.9 15.3 128 19-148 1-129 (164)
16 KOG0098 GTPase Rab2, small G p 100.0 2.3E-27 5E-32 154.9 12.1 135 15-150 4-148 (216)
17 cd04158 ARD1 ARD1 subfamily. 100.0 1.2E-26 2.5E-31 154.8 15.7 127 19-145 1-127 (169)
18 KOG0078 GTP-binding protein SE 100.0 4E-27 8.7E-32 157.0 13.2 137 13-150 8-154 (207)
19 smart00178 SAR Sar1p-like memb 100.0 1.8E-26 3.8E-31 156.0 16.2 135 15-149 15-149 (184)
20 KOG0093 GTPase Rab3, small G p 100.0 3.8E-27 8.2E-32 148.6 11.9 135 15-150 19-163 (193)
21 cd04161 Arl2l1_Arl13_like Arl2 100.0 1.5E-26 3.4E-31 154.0 15.6 130 19-148 1-130 (167)
22 cd04102 RabL3 RabL3 (Rab-like3 99.9 1.6E-26 3.6E-31 157.8 15.1 134 18-151 1-171 (202)
23 cd04131 Rnd Rnd subfamily. Th 99.9 6.2E-27 1.3E-31 157.4 11.7 131 17-148 1-153 (178)
24 cd04126 Rab20 Rab20 subfamily. 99.9 2.2E-26 4.7E-31 159.1 14.4 114 18-132 1-114 (220)
25 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 7.6E-27 1.6E-31 157.4 11.9 133 15-148 3-157 (182)
26 cd04151 Arl1 Arl1 subfamily. 99.9 4.1E-26 8.9E-31 150.5 14.9 129 19-147 1-129 (158)
27 cd01875 RhoG RhoG subfamily. 99.9 1.8E-26 3.9E-31 156.8 13.2 117 16-133 2-122 (191)
28 KOG0080 GTPase Rab18, small G 99.9 5.7E-27 1.2E-31 149.8 9.6 135 15-149 9-153 (209)
29 cd00878 Arf_Arl Arf (ADP-ribos 99.9 8.7E-26 1.9E-30 148.8 15.1 128 19-146 1-128 (158)
30 cd04155 Arl3 Arl3 subfamily. 99.9 1.2E-25 2.6E-30 150.2 16.0 141 13-153 10-150 (173)
31 cd04157 Arl6 Arl6 subfamily. 99.9 9.3E-26 2E-30 149.1 15.0 129 19-147 1-133 (162)
32 cd04120 Rab12 Rab12 subfamily. 99.9 8.3E-26 1.8E-30 154.5 15.1 115 18-133 1-120 (202)
33 cd04121 Rab40 Rab40 subfamily. 99.9 6.5E-26 1.4E-30 153.6 14.3 132 15-148 4-145 (189)
34 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 2.3E-26 5E-31 159.1 12.0 130 18-148 2-153 (222)
35 KOG0087 GTPase Rab11/YPT3, sma 99.9 2.4E-26 5.1E-31 153.0 11.1 135 15-150 12-156 (222)
36 cd01874 Cdc42 Cdc42 subfamily. 99.9 8E-26 1.7E-30 151.7 13.8 116 17-133 1-120 (175)
37 cd04133 Rop_like Rop subfamily 99.9 4E-26 8.6E-31 153.1 12.2 127 18-146 2-148 (176)
38 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 3.8E-26 8.1E-31 158.8 12.4 133 15-148 11-165 (232)
39 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 6.4E-26 1.4E-30 151.7 12.8 132 17-148 2-142 (172)
40 cd04175 Rap1 Rap1 subgroup. T 99.9 1.2E-25 2.7E-30 149.0 13.5 132 17-148 1-141 (164)
41 cd04136 Rap_like Rap-like subf 99.9 1.5E-25 3.3E-30 148.2 13.6 131 18-148 2-141 (163)
42 PTZ00369 Ras-like protein; Pro 99.9 1.9E-25 4.2E-30 151.5 14.1 134 15-148 3-145 (189)
43 cd04127 Rab27A Rab27a subfamil 99.9 2.4E-25 5.3E-30 149.6 14.5 133 16-148 3-155 (180)
44 cd04122 Rab14 Rab14 subfamily. 99.9 2.6E-25 5.6E-30 147.8 14.2 131 17-148 2-142 (166)
45 cd04156 ARLTS1 ARLTS1 subfamil 99.9 4.4E-25 9.5E-30 145.7 14.7 129 19-147 1-130 (160)
46 cd00879 Sar1 Sar1 subfamily. 99.9 6.9E-25 1.5E-29 148.7 15.6 133 14-146 16-148 (190)
47 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 6.7E-25 1.5E-29 148.1 15.2 128 17-144 3-135 (183)
48 PLN03071 GTP-binding nuclear p 99.9 6.2E-25 1.3E-29 152.2 14.4 136 11-148 7-150 (219)
49 cd04119 RJL RJL (RabJ-Like) su 99.9 5.1E-25 1.1E-29 146.1 13.4 131 18-148 1-145 (168)
50 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 6E-25 1.3E-29 150.4 14.0 127 18-144 1-141 (201)
51 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 8.1E-25 1.8E-29 146.1 14.1 130 19-148 2-143 (170)
52 cd04145 M_R_Ras_like M-Ras/R-R 99.9 5.4E-25 1.2E-29 145.7 13.2 132 17-148 2-142 (164)
53 cd04176 Rap2 Rap2 subgroup. T 99.9 9E-25 1.9E-29 144.7 14.2 132 17-148 1-141 (163)
54 cd01865 Rab3 Rab3 subfamily. 99.9 6.4E-25 1.4E-29 145.8 13.5 130 18-148 2-141 (165)
55 cd04115 Rab33B_Rab33A Rab33B/R 99.9 1.1E-24 2.4E-29 145.4 14.6 132 17-148 2-144 (170)
56 smart00173 RAS Ras subfamily o 99.9 9.4E-25 2E-29 144.7 13.5 131 18-148 1-140 (164)
57 cd01871 Rac1_like Rac1-like su 99.9 4.9E-25 1.1E-29 147.7 12.0 115 17-132 1-119 (174)
58 cd04159 Arl10_like Arl10-like 99.9 3E-24 6.5E-29 140.8 15.2 128 20-147 2-130 (159)
59 cd04111 Rab39 Rab39 subfamily. 99.9 1.3E-24 2.9E-29 149.7 14.1 132 17-148 2-144 (211)
60 cd01867 Rab8_Rab10_Rab13_like 99.9 1.1E-24 2.3E-29 145.0 13.1 132 16-148 2-143 (167)
61 cd04117 Rab15 Rab15 subfamily. 99.9 2.4E-24 5.1E-29 142.7 14.6 130 18-148 1-140 (161)
62 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 1.7E-24 3.6E-29 143.8 13.8 131 17-148 2-142 (166)
63 cd04132 Rho4_like Rho4-like su 99.9 1.3E-24 2.7E-29 147.1 13.3 127 18-145 1-141 (187)
64 KOG0075 GTP-binding ADP-ribosy 99.9 2E-25 4.3E-30 140.8 8.6 139 14-152 17-156 (186)
65 cd04109 Rab28 Rab28 subfamily. 99.9 2.2E-24 4.7E-29 149.1 14.7 131 18-148 1-144 (215)
66 cd04138 H_N_K_Ras_like H-Ras/N 99.9 2E-24 4.2E-29 142.5 13.7 131 18-148 2-140 (162)
67 PLN00023 GTP-binding protein; 99.9 3.9E-24 8.5E-29 153.3 16.1 137 11-147 15-191 (334)
68 cd04106 Rab23_lke Rab23-like s 99.9 1.4E-24 3E-29 143.5 12.8 129 18-148 1-141 (162)
69 cd00877 Ran Ran (Ras-related n 99.9 2.9E-24 6.3E-29 142.9 14.2 115 18-134 1-120 (166)
70 cd04160 Arfrp1 Arfrp1 subfamil 99.9 2.9E-24 6.2E-29 142.7 14.0 124 19-142 1-131 (167)
71 PF00071 Ras: Ras family; Int 99.9 1.9E-24 4E-29 143.0 13.0 130 19-149 1-140 (162)
72 cd01864 Rab19 Rab19 subfamily. 99.9 3.3E-24 7.1E-29 142.3 14.0 130 16-146 2-141 (165)
73 cd04144 Ras2 Ras2 subfamily. 99.9 1.1E-24 2.3E-29 148.0 11.8 130 19-148 1-141 (190)
74 cd04125 RabA_like RabA-like su 99.9 2.7E-24 5.8E-29 145.7 13.7 130 18-148 1-140 (188)
75 cd01892 Miro2 Miro2 subfamily. 99.9 6.6E-24 1.4E-28 141.6 15.3 129 15-146 2-141 (169)
76 cd04134 Rho3 Rho3 subfamily. 99.9 1.8E-24 3.8E-29 146.8 12.5 116 18-134 1-120 (189)
77 cd04110 Rab35 Rab35 subfamily. 99.9 3.7E-24 8.1E-29 146.3 14.0 131 16-148 5-145 (199)
78 KOG0079 GTP-binding protein H- 99.9 8.7E-25 1.9E-29 138.1 9.4 131 18-150 9-149 (198)
79 KOG0086 GTPase Rab4, small G p 99.9 1.1E-24 2.3E-29 138.5 9.6 132 16-148 8-149 (214)
80 cd01860 Rab5_related Rab5-rela 99.9 3.7E-24 8E-29 141.6 12.7 129 17-146 1-139 (163)
81 cd01866 Rab2 Rab2 subfamily. 99.9 5.4E-24 1.2E-28 141.8 13.5 132 16-148 3-144 (168)
82 cd04112 Rab26 Rab26 subfamily. 99.9 4.3E-24 9.3E-29 145.1 13.2 130 18-148 1-141 (191)
83 cd04116 Rab9 Rab9 subfamily. 99.9 9E-24 1.9E-28 140.8 14.4 131 15-145 3-145 (170)
84 cd04128 Spg1 Spg1p. Spg1p (se 99.9 6.5E-24 1.4E-28 143.2 13.8 112 18-131 1-117 (182)
85 cd04113 Rab4 Rab4 subfamily. 99.9 8.6E-24 1.9E-28 139.7 14.1 129 18-147 1-139 (161)
86 cd01868 Rab11_like Rab11-like. 99.9 1.1E-23 2.4E-28 139.7 14.3 131 16-147 2-142 (165)
87 cd01863 Rab18 Rab18 subfamily. 99.9 8.9E-24 1.9E-28 139.6 13.8 131 18-148 1-140 (161)
88 cd04124 RabL2 RabL2 subfamily. 99.9 8.5E-24 1.8E-28 140.0 13.7 128 18-147 1-135 (161)
89 cd04140 ARHI_like ARHI subfami 99.9 6.7E-24 1.5E-28 140.9 13.0 130 18-147 2-142 (165)
90 KOG0095 GTPase Rab30, small G 99.9 2.6E-24 5.6E-29 136.3 10.2 125 17-142 7-141 (213)
91 cd01861 Rab6 Rab6 subfamily. 99.9 1.2E-23 2.5E-28 138.9 13.6 114 18-132 1-119 (161)
92 PLN03110 Rab GTPase; Provision 99.9 1.4E-23 3E-28 145.2 14.4 133 15-148 10-152 (216)
93 KOG0074 GTP-binding ADP-ribosy 99.9 6.2E-24 1.4E-28 133.3 11.4 139 15-153 15-154 (185)
94 PLN03118 Rab family protein; P 99.9 1.7E-23 3.6E-28 144.3 14.2 135 14-148 11-155 (211)
95 smart00175 RAB Rab subfamily o 99.9 2.3E-23 5E-28 137.7 14.2 129 18-147 1-139 (164)
96 cd04130 Wrch_1 Wrch-1 subfamil 99.9 1.4E-23 3E-28 140.4 13.1 114 18-132 1-118 (173)
97 cd04177 RSR1 RSR1 subgroup. R 99.9 1.4E-23 3E-28 139.8 13.0 128 17-144 1-137 (168)
98 smart00174 RHO Rho (Ras homolo 99.9 1.1E-23 2.5E-28 140.8 12.2 112 20-132 1-116 (174)
99 cd04118 Rab24 Rab24 subfamily. 99.9 4.2E-23 9.1E-28 140.3 15.1 113 18-132 1-119 (193)
100 KOG0394 Ras-related GTPase [Ge 99.9 3.1E-24 6.7E-29 140.1 8.9 119 14-132 6-132 (210)
101 cd04135 Tc10 TC10 subfamily. 99.9 3.7E-23 8.1E-28 138.2 13.7 115 18-133 1-119 (174)
102 cd01893 Miro1 Miro1 subfamily. 99.9 2.9E-23 6.4E-28 138.0 12.9 117 18-135 1-120 (166)
103 cd04101 RabL4 RabL4 (Rab-like4 99.9 7E-23 1.5E-27 135.7 14.2 128 18-147 1-141 (164)
104 cd01873 RhoBTB RhoBTB subfamil 99.9 1.8E-23 4E-28 142.3 11.5 130 17-149 2-175 (195)
105 cd04143 Rhes_like Rhes_like su 99.9 5E-23 1.1E-27 144.7 13.9 125 18-142 1-139 (247)
106 smart00176 RAN Ran (Ras-relate 99.9 5.1E-23 1.1E-27 140.6 12.9 124 23-148 1-132 (200)
107 cd04139 RalA_RalB RalA/RalB su 99.9 9.9E-23 2.2E-27 134.7 13.5 131 18-148 1-140 (164)
108 cd01862 Rab7 Rab7 subfamily. 99.9 1E-22 2.2E-27 135.7 13.6 115 18-132 1-123 (172)
109 cd04146 RERG_RasL11_like RERG/ 99.9 3.3E-23 7.2E-28 137.5 11.1 130 19-148 1-141 (165)
110 KOG0091 GTPase Rab39, small G 99.9 1.3E-23 2.9E-28 134.8 8.6 136 15-150 6-153 (213)
111 PLN03108 Rab family protein; P 99.9 9.3E-23 2E-27 140.5 13.1 132 16-148 5-146 (210)
112 cd04148 RGK RGK subfamily. Th 99.9 1.9E-22 4E-27 140.0 14.6 129 18-148 1-141 (221)
113 cd04103 Centaurin_gamma Centau 99.9 2E-22 4.3E-27 133.1 14.0 109 18-131 1-112 (158)
114 cd04105 SR_beta Signal recogni 99.9 1.6E-22 3.5E-27 138.6 13.1 123 19-141 2-132 (203)
115 KOG0072 GTP-binding ADP-ribosy 99.9 1.5E-23 3.2E-28 131.9 7.0 153 1-153 1-154 (182)
116 KOG0081 GTPase Rab27, small G 99.9 1.2E-24 2.6E-29 139.1 2.0 133 18-150 10-161 (219)
117 cd04142 RRP22 RRP22 subfamily. 99.9 3E-22 6.4E-27 136.8 13.7 116 18-133 1-131 (198)
118 cd00154 Rab Rab family. Rab G 99.9 2.6E-22 5.6E-27 131.5 12.9 113 18-131 1-118 (159)
119 cd00157 Rho Rho (Ras homology) 99.9 1.9E-22 4.1E-27 134.3 12.3 116 18-134 1-120 (171)
120 cd04123 Rab21 Rab21 subfamily. 99.9 3.2E-22 6.8E-27 131.9 13.3 129 18-147 1-139 (162)
121 cd04137 RheB Rheb (Ras Homolog 99.9 2.4E-22 5.1E-27 135.1 12.7 130 18-147 2-140 (180)
122 cd00876 Ras Ras family. The R 99.9 3.5E-22 7.6E-27 131.4 13.1 129 19-147 1-138 (160)
123 cd01870 RhoA_like RhoA-like su 99.9 2E-22 4.4E-27 134.8 12.0 115 18-133 2-120 (175)
124 PF08477 Miro: Miro-like prote 99.9 9.9E-23 2.1E-27 128.4 9.2 110 19-129 1-119 (119)
125 cd04147 Ras_dva Ras-dva subfam 99.9 7.3E-22 1.6E-26 134.9 13.9 114 19-132 1-118 (198)
126 PTZ00132 GTP-binding nuclear p 99.9 1.7E-21 3.7E-26 134.6 14.1 121 11-133 3-128 (215)
127 KOG0088 GTPase Rab21, small G 99.9 9.4E-23 2E-27 130.3 6.2 135 14-149 10-154 (218)
128 cd04114 Rab30 Rab30 subfamily. 99.9 7.4E-21 1.6E-25 126.5 15.0 117 16-133 6-127 (169)
129 KOG0393 Ras-related small GTPa 99.9 3.6E-22 7.8E-27 133.7 6.8 118 15-133 2-124 (198)
130 cd04129 Rho2 Rho2 subfamily. 99.9 3.4E-21 7.4E-26 130.5 11.7 114 18-132 2-119 (187)
131 KOG0395 Ras-related GTPase [Ge 99.9 2.2E-21 4.7E-26 131.8 10.2 133 16-148 2-143 (196)
132 KOG0097 GTPase Rab14, small G 99.9 1.7E-21 3.8E-26 122.5 8.8 134 15-149 9-152 (215)
133 KOG0083 GTPase Rab26/Rab37, sm 99.9 3.3E-23 7.2E-28 129.0 0.7 128 22-150 2-140 (192)
134 COG1100 GTPase SAR1 and relate 99.9 1.8E-20 3.8E-25 129.7 12.1 118 17-134 5-127 (219)
135 KOG0076 GTP-binding ADP-ribosy 99.8 5.4E-21 1.2E-25 123.9 6.3 145 1-145 1-153 (197)
136 cd01898 Obg Obg subfamily. Th 99.8 1.4E-19 3E-24 120.4 12.6 117 19-135 2-131 (170)
137 TIGR00231 small_GTP small GTP- 99.8 3E-19 6.6E-24 116.6 13.8 118 17-134 1-124 (161)
138 cd01890 LepA LepA subfamily. 99.8 1.6E-19 3.6E-24 121.1 12.4 124 18-146 1-150 (179)
139 cd04171 SelB SelB subfamily. 99.8 2.2E-19 4.8E-24 118.6 12.3 112 18-133 1-119 (164)
140 TIGR00450 mnmE_trmE_thdF tRNA 99.8 4.4E-19 9.5E-24 133.7 15.1 125 15-146 201-337 (442)
141 cd01891 TypA_BipA TypA (tyrosi 99.8 5E-19 1.1E-23 120.5 13.5 112 17-133 2-132 (194)
142 cd01897 NOG NOG1 is a nucleola 99.8 1E-18 2.2E-23 116.1 13.9 115 19-135 2-130 (168)
143 cd01878 HflX HflX subfamily. 99.8 3.4E-19 7.4E-24 122.1 12.0 119 15-135 39-170 (204)
144 KOG4252 GTP-binding protein [S 99.8 9.6E-21 2.1E-25 123.5 2.5 133 15-149 18-160 (246)
145 PF02421 FeoB_N: Ferrous iron 99.8 9.1E-19 2E-23 114.3 11.4 124 18-148 1-139 (156)
146 cd00882 Ras_like_GTPase Ras-li 99.8 8E-19 1.7E-23 113.5 11.0 113 22-135 1-119 (157)
147 PF09439 SRPRB: Signal recogni 99.8 1.2E-19 2.6E-24 120.9 7.0 124 16-140 2-134 (181)
148 PRK15494 era GTPase Era; Provi 99.8 1.6E-18 3.5E-23 127.0 13.5 114 15-133 50-175 (339)
149 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 1.5E-18 3.2E-23 115.2 12.2 110 19-133 2-117 (168)
150 TIGR02528 EutP ethanolamine ut 99.8 3.1E-19 6.6E-24 115.7 8.2 109 19-145 2-119 (142)
151 cd01879 FeoB Ferrous iron tran 99.8 2.6E-18 5.5E-23 112.9 12.5 120 22-148 1-135 (158)
152 cd04164 trmE TrmE (MnmE, ThdF, 99.8 5.6E-18 1.2E-22 111.0 13.4 111 18-135 2-124 (157)
153 PRK03003 GTP-binding protein D 99.8 3.9E-18 8.4E-23 130.0 14.4 113 16-133 37-161 (472)
154 cd00881 GTP_translation_factor 99.8 7.5E-18 1.6E-22 113.6 13.9 111 19-134 1-130 (189)
155 cd01881 Obg_like The Obg-like 99.8 1.7E-18 3.7E-23 115.6 10.6 116 22-137 1-139 (176)
156 PRK04213 GTP-binding protein; 99.8 2.4E-19 5.2E-24 122.6 6.2 126 15-145 7-159 (201)
157 TIGR00436 era GTP-binding prot 99.8 5.5E-18 1.2E-22 120.9 13.3 109 19-133 2-122 (270)
158 cd01894 EngA1 EngA1 subfamily. 99.8 5.4E-18 1.2E-22 111.1 12.1 120 21-145 1-132 (157)
159 TIGR03156 GTP_HflX GTP-binding 99.8 4E-18 8.7E-23 125.2 12.6 117 16-134 188-317 (351)
160 cd04169 RF3 RF3 subfamily. Pe 99.8 1.2E-17 2.5E-22 118.8 13.9 126 17-147 2-155 (267)
161 PRK12299 obgE GTPase CgtA; Rev 99.8 1.1E-17 2.5E-22 122.0 14.2 117 18-134 159-287 (335)
162 COG2229 Predicted GTPase [Gene 99.8 1.4E-17 3E-22 109.2 12.3 130 13-146 6-149 (187)
163 TIGR02729 Obg_CgtA Obg family 99.8 1.6E-17 3.5E-22 121.1 13.5 122 18-139 158-294 (329)
164 cd01889 SelB_euk SelB subfamil 99.8 1.5E-17 3.2E-22 113.1 12.4 111 18-133 1-135 (192)
165 TIGR03598 GTPase_YsxC ribosome 99.8 1.1E-17 2.4E-22 112.6 11.3 115 11-133 12-144 (179)
166 cd04163 Era Era subfamily. Er 99.8 2.4E-17 5.1E-22 108.7 12.6 111 17-132 3-125 (168)
167 cd01895 EngA2 EngA2 subfamily. 99.8 4.2E-17 9E-22 108.3 13.7 112 17-133 2-128 (174)
168 PRK03003 GTP-binding protein D 99.8 1.8E-17 3.9E-22 126.4 13.3 113 16-133 210-337 (472)
169 PRK05291 trmE tRNA modificatio 99.8 1.9E-17 4.1E-22 125.4 13.0 112 15-133 213-336 (449)
170 cd04168 TetM_like Tet(M)-like 99.8 2.3E-17 5E-22 115.5 11.9 122 19-145 1-146 (237)
171 PRK00093 GTP-binding protein D 99.7 3.7E-17 8E-22 123.7 13.5 110 18-132 2-123 (435)
172 TIGR03594 GTPase_EngA ribosome 99.7 3.5E-17 7.6E-22 123.6 12.3 122 19-145 1-134 (429)
173 TIGR00487 IF-2 translation ini 99.7 3.9E-17 8.5E-22 126.7 12.3 114 14-132 84-201 (587)
174 PRK00089 era GTPase Era; Revie 99.7 9.9E-17 2.1E-21 115.6 13.0 112 16-132 4-127 (292)
175 KOG3883 Ras family small GTPas 99.7 1.1E-16 2.4E-21 102.0 11.6 121 15-135 7-135 (198)
176 TIGR03594 GTPase_EngA ribosome 99.7 1.1E-16 2.5E-21 120.8 13.8 111 16-131 171-296 (429)
177 PRK05306 infB translation init 99.7 6.9E-17 1.5E-21 128.3 12.6 115 14-133 287-404 (787)
178 PRK11058 GTPase HflX; Provisio 99.7 1.2E-16 2.6E-21 120.0 12.9 115 18-133 198-324 (426)
179 PRK12297 obgE GTPase CgtA; Rev 99.7 2.5E-16 5.4E-21 117.9 14.5 126 19-144 160-301 (424)
180 COG1159 Era GTPase [General fu 99.7 6E-17 1.3E-21 113.9 10.5 122 15-141 4-138 (298)
181 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 6.5E-17 1.4E-21 112.1 10.4 114 19-133 1-126 (232)
182 PF00009 GTP_EFTU: Elongation 99.7 5.3E-17 1.2E-21 110.0 9.6 112 16-132 2-136 (188)
183 PRK00454 engB GTP-binding prot 99.7 1.5E-16 3.2E-21 108.2 11.6 121 9-134 16-151 (196)
184 KOG0077 Vesicle coat complex C 99.7 2.2E-17 4.7E-22 106.5 6.8 132 15-146 18-149 (193)
185 COG1160 Predicted GTPases [Gen 99.7 7.3E-17 1.6E-21 119.2 10.4 112 18-134 4-128 (444)
186 TIGR01393 lepA GTP-binding pro 99.7 1.3E-16 2.9E-21 124.1 12.3 124 17-145 3-152 (595)
187 PRK12296 obgE GTPase CgtA; Rev 99.7 1.9E-16 4E-21 120.1 12.5 119 17-135 159-301 (500)
188 COG1084 Predicted GTPase [Gene 99.7 3.3E-16 7.1E-21 111.4 12.3 125 15-142 166-304 (346)
189 PF01926 MMR_HSR1: 50S ribosom 99.7 1.9E-15 4.1E-20 94.8 13.8 103 19-127 1-116 (116)
190 cd01886 EF-G Elongation factor 99.7 4.6E-16 9.9E-21 110.8 12.2 123 19-146 1-147 (270)
191 cd04167 Snu114p Snu114p subfam 99.7 5.8E-16 1.3E-20 106.9 12.4 109 18-131 1-136 (213)
192 TIGR00475 selB selenocysteine- 99.7 2.9E-16 6.4E-21 122.1 12.1 109 18-134 1-119 (581)
193 cd00880 Era_like Era (E. coli 99.7 6.7E-16 1.5E-20 100.7 12.1 113 22-139 1-125 (163)
194 PRK09518 bifunctional cytidyla 99.7 5.9E-16 1.3E-20 123.2 13.9 113 16-133 274-398 (712)
195 TIGR01394 TypA_BipA GTP-bindin 99.7 6.7E-16 1.5E-20 120.1 13.9 111 18-133 2-131 (594)
196 PRK12298 obgE GTPase CgtA; Rev 99.7 6.2E-16 1.3E-20 115.0 13.1 117 19-135 161-292 (390)
197 cd01888 eIF2_gamma eIF2-gamma 99.7 2.9E-16 6.3E-21 107.7 10.5 113 18-133 1-152 (203)
198 PRK09518 bifunctional cytidyla 99.7 4.5E-16 9.7E-21 123.8 12.9 120 16-140 449-583 (712)
199 PRK00093 GTP-binding protein D 99.7 1.1E-15 2.4E-20 115.7 14.2 121 15-140 171-306 (435)
200 PRK09554 feoB ferrous iron tra 99.7 1.2E-15 2.7E-20 121.5 15.0 126 16-148 2-146 (772)
201 KOG0090 Signal recognition par 99.7 4E-16 8.7E-21 104.7 9.8 129 15-143 36-170 (238)
202 PRK12317 elongation factor 1-a 99.7 4.2E-16 9.2E-21 117.6 11.2 117 14-132 3-153 (425)
203 PRK10218 GTP-binding protein; 99.7 1.7E-15 3.7E-20 117.9 14.8 114 15-133 3-135 (607)
204 PRK00741 prfC peptide chain re 99.7 8.9E-16 1.9E-20 118.0 12.8 128 15-147 8-163 (526)
205 CHL00189 infB translation init 99.7 1.2E-15 2.5E-20 120.5 13.6 115 14-133 241-362 (742)
206 cd04170 EF-G_bact Elongation f 99.7 1.5E-15 3.2E-20 108.3 13.0 123 19-146 1-147 (268)
207 PRK15467 ethanolamine utilizat 99.7 3.4E-16 7.4E-21 103.3 9.0 112 19-145 3-120 (158)
208 cd01885 EF2 EF2 (for archaea a 99.7 1.2E-15 2.6E-20 105.7 12.0 109 18-131 1-138 (222)
209 TIGR00491 aIF-2 translation in 99.7 6.4E-16 1.4E-20 119.9 11.5 109 16-132 3-135 (590)
210 TIGR00483 EF-1_alpha translati 99.7 5.4E-16 1.2E-20 117.1 10.7 117 14-132 4-155 (426)
211 cd04166 CysN_ATPS CysN_ATPS su 99.7 1.1E-15 2.3E-20 105.2 11.3 110 19-132 1-144 (208)
212 PRK13351 elongation factor G; 99.7 1.4E-15 3.1E-20 120.7 13.3 129 13-146 4-156 (687)
213 cd01884 EF_Tu EF-Tu subfamily. 99.7 9.5E-16 2.1E-20 104.4 10.5 111 17-132 2-132 (195)
214 PRK05433 GTP-binding protein L 99.7 3.4E-15 7.3E-20 116.5 14.3 126 15-145 5-156 (600)
215 cd01896 DRG The developmentall 99.7 2.9E-15 6.3E-20 104.7 12.4 80 19-98 2-91 (233)
216 PTZ00099 rab6; Provisional 99.7 1.4E-15 3.1E-20 102.0 9.9 87 45-132 9-99 (176)
217 KOG1707 Predicted Ras related/ 99.6 1.3E-15 2.8E-20 115.0 9.9 122 13-134 5-131 (625)
218 TIGR00437 feoB ferrous iron tr 99.6 3.4E-15 7.3E-20 116.4 12.5 118 24-148 1-133 (591)
219 TIGR00503 prfC peptide chain r 99.6 6.1E-15 1.3E-19 113.5 13.7 127 15-146 9-163 (527)
220 COG0486 ThdF Predicted GTPase 99.6 6.5E-15 1.4E-19 109.2 13.0 116 15-136 215-342 (454)
221 cd01883 EF1_alpha Eukaryotic e 99.6 2.5E-15 5.4E-20 104.2 10.2 111 19-132 1-151 (219)
222 TIGR00484 EF-G translation elo 99.6 7.5E-15 1.6E-19 116.6 14.2 128 14-146 7-158 (689)
223 COG0218 Predicted GTPase [Gene 99.6 3.9E-15 8.4E-20 99.7 10.5 133 10-148 17-169 (200)
224 cd01850 CDC_Septin CDC/Septin. 99.6 3.9E-15 8.4E-20 106.4 10.9 112 17-133 4-158 (276)
225 PRK04004 translation initiatio 99.6 4.8E-15 1E-19 115.3 11.7 110 14-131 3-136 (586)
226 cd04104 p47_IIGP_like p47 (47- 99.6 4.7E-15 1E-19 101.2 8.8 108 17-131 1-120 (197)
227 PLN03126 Elongation factor Tu; 99.6 7.9E-15 1.7E-19 111.6 10.7 114 15-133 79-212 (478)
228 COG1160 Predicted GTPases [Gen 99.6 2.2E-14 4.8E-19 106.2 12.6 122 16-142 177-315 (444)
229 KOG0096 GTPase Ran/TC4/GSP1 (n 99.6 4.7E-15 1E-19 97.7 7.8 117 16-134 9-130 (216)
230 PRK12736 elongation factor Tu; 99.6 9.5E-15 2.1E-19 109.3 10.5 115 14-133 9-143 (394)
231 TIGR03680 eif2g_arch translati 99.6 1.1E-14 2.3E-19 109.3 10.2 117 15-134 2-150 (406)
232 PRK10512 selenocysteinyl-tRNA- 99.6 2.1E-14 4.6E-19 112.3 11.9 111 19-134 2-120 (614)
233 CHL00071 tufA elongation facto 99.6 1.7E-14 3.6E-19 108.4 10.7 114 15-133 10-143 (409)
234 PRK12735 elongation factor Tu; 99.6 1.7E-14 3.7E-19 108.0 10.6 114 15-133 10-143 (396)
235 COG0370 FeoB Fe2+ transport sy 99.6 4.8E-14 1E-18 108.7 12.9 127 16-149 2-143 (653)
236 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 5.5E-14 1.2E-18 95.9 11.9 115 18-134 1-132 (196)
237 PRK12739 elongation factor G; 99.6 2.6E-14 5.5E-19 113.6 11.7 127 14-145 5-155 (691)
238 cd04165 GTPBP1_like GTPBP1-lik 99.6 4.8E-14 1E-18 98.0 11.5 111 19-134 1-154 (224)
239 TIGR00485 EF-Tu translation el 99.6 6.2E-14 1.3E-18 105.0 12.3 114 15-133 10-143 (394)
240 PRK04000 translation initiatio 99.6 4.1E-14 8.9E-19 106.3 10.9 117 15-134 7-155 (411)
241 PRK05124 cysN sulfate adenylyl 99.6 1.1E-13 2.3E-18 105.7 12.8 120 9-132 19-174 (474)
242 PRK05506 bifunctional sulfate 99.6 5.3E-14 1.2E-18 110.9 11.2 125 4-132 11-171 (632)
243 cd00066 G-alpha G protein alph 99.5 1.2E-13 2.6E-18 100.6 11.8 85 48-132 148-242 (317)
244 PLN03127 Elongation factor Tu; 99.5 8.7E-14 1.9E-18 105.3 11.3 115 14-133 58-192 (447)
245 PRK00049 elongation factor Tu; 99.5 7.4E-14 1.6E-18 104.5 10.6 114 15-133 10-143 (396)
246 KOG1673 Ras GTPases [General f 99.5 2E-14 4.4E-19 92.0 5.9 117 13-131 16-137 (205)
247 cd01876 YihA_EngB The YihA (En 99.5 2.1E-13 4.6E-18 89.9 11.2 110 19-134 1-126 (170)
248 PRK00007 elongation factor G; 99.5 1.6E-13 3.6E-18 109.0 12.3 127 14-145 7-157 (693)
249 smart00275 G_alpha G protein a 99.5 2.1E-13 4.5E-18 100.1 11.8 83 50-132 173-265 (342)
250 TIGR02034 CysN sulfate adenyly 99.5 1.3E-13 2.8E-18 103.5 10.0 111 18-132 1-147 (406)
251 TIGR00490 aEF-2 translation el 99.5 1.6E-13 3.5E-18 109.4 10.9 113 15-132 17-152 (720)
252 cd01853 Toc34_like Toc34-like 99.5 6.8E-13 1.5E-17 93.4 12.4 118 14-133 28-164 (249)
253 TIGR00991 3a0901s02IAP34 GTP-b 99.5 2.5E-12 5.4E-17 92.3 14.9 117 14-132 35-167 (313)
254 PLN00043 elongation factor 1-a 99.5 2.2E-13 4.7E-18 103.2 10.0 112 15-131 5-158 (447)
255 PF10662 PduV-EutP: Ethanolami 99.5 3.7E-13 8E-18 86.4 8.9 112 18-146 2-121 (143)
256 COG1163 DRG Predicted GTPase [ 99.5 3.1E-13 6.8E-18 96.2 9.0 85 15-99 61-155 (365)
257 KOG1489 Predicted GTP-binding 99.5 8E-13 1.7E-17 93.9 10.1 127 18-144 197-340 (366)
258 PTZ00141 elongation factor 1- 99.4 1.3E-12 2.9E-17 99.0 11.2 113 15-131 5-158 (446)
259 PF04548 AIG1: AIG1 family; I 99.4 2.4E-12 5.1E-17 88.9 11.2 122 18-141 1-139 (212)
260 KOG4423 GTP-binding protein-li 99.4 1.9E-15 4.2E-20 99.3 -4.1 116 18-133 26-150 (229)
261 COG0532 InfB Translation initi 99.4 8.7E-13 1.9E-17 99.3 9.1 115 15-134 3-123 (509)
262 PRK12740 elongation factor G; 99.4 3.3E-12 7.1E-17 101.5 12.8 119 23-146 1-143 (668)
263 PLN00116 translation elongatio 99.4 1.9E-12 4.1E-17 104.8 10.9 113 14-131 16-163 (843)
264 COG3596 Predicted GTPase [Gene 99.4 8.8E-13 1.9E-17 92.1 7.6 119 11-133 33-163 (296)
265 PTZ00416 elongation factor 2; 99.4 2.9E-12 6.2E-17 103.7 11.1 112 15-131 17-157 (836)
266 KOG1191 Mitochondrial GTPase [ 99.4 5.9E-12 1.3E-16 94.0 11.4 119 15-133 266-404 (531)
267 KOG1145 Mitochondrial translat 99.4 3E-12 6.6E-17 96.6 9.3 117 13-134 149-269 (683)
268 KOG1423 Ras-like GTPase ERA [C 99.4 4.2E-12 9.1E-17 89.9 9.4 116 14-133 69-200 (379)
269 cd01882 BMS1 Bms1. Bms1 is an 99.4 1.1E-11 2.3E-16 86.3 11.1 110 14-132 36-147 (225)
270 KOG3886 GTP-binding protein [S 99.4 1.9E-12 4.1E-17 88.3 6.6 118 16-134 3-132 (295)
271 COG0480 FusA Translation elong 99.4 1.7E-11 3.7E-16 96.7 12.3 126 14-145 7-158 (697)
272 COG0536 Obg Predicted GTPase [ 99.4 9.6E-12 2.1E-16 89.3 9.8 125 19-143 161-301 (369)
273 COG5256 TEF1 Translation elong 99.3 2.5E-11 5.5E-16 89.1 11.2 113 15-132 5-159 (428)
274 PF00735 Septin: Septin; Inte 99.3 1.9E-11 4.1E-16 87.6 10.2 121 17-142 4-166 (281)
275 PRK07560 elongation factor EF- 99.3 1.2E-11 2.7E-16 99.0 10.2 113 15-132 18-153 (731)
276 KOG0082 G-protein alpha subuni 99.3 2.4E-11 5.2E-16 88.4 10.1 87 47-133 181-277 (354)
277 PTZ00327 eukaryotic translatio 99.3 2.1E-11 4.5E-16 92.6 9.8 118 14-134 31-187 (460)
278 PF05049 IIGP: Interferon-indu 99.3 1.3E-11 2.9E-16 90.7 6.7 110 14-130 32-153 (376)
279 COG2895 CysN GTPases - Sulfate 99.3 5E-11 1.1E-15 86.0 9.0 127 15-148 4-178 (431)
280 COG2262 HflX GTPases [General 99.2 2.7E-10 5.9E-15 83.7 12.1 121 14-135 189-321 (411)
281 smart00010 small_GTPase Small 99.2 7.2E-11 1.6E-15 74.3 7.8 89 18-132 1-91 (124)
282 COG1217 TypA Predicted membran 99.2 1.1E-10 2.4E-15 87.0 9.5 114 16-134 4-136 (603)
283 KOG0462 Elongation factor-type 99.2 2.8E-10 6.1E-15 86.2 11.7 115 15-134 58-193 (650)
284 COG4108 PrfC Peptide chain rel 99.2 2E-10 4.3E-15 85.0 10.6 129 15-148 10-166 (528)
285 KOG1490 GTP-binding protein CR 99.2 2.4E-11 5.1E-16 91.1 5.0 117 14-134 165-297 (620)
286 COG0481 LepA Membrane GTPase L 99.2 2.7E-10 5.8E-15 85.1 10.0 128 15-147 7-160 (603)
287 KOG1707 Predicted Ras related/ 99.2 6.6E-10 1.4E-14 84.7 12.2 134 10-148 418-561 (625)
288 TIGR00993 3a0901s04IAP86 chlor 99.2 1.2E-09 2.6E-14 85.2 13.4 115 16-132 117-250 (763)
289 cd01899 Ygr210 Ygr210 subfamil 99.2 2E-10 4.3E-15 83.6 8.1 77 20-96 1-111 (318)
290 PF00350 Dynamin_N: Dynamin fa 99.1 7.5E-10 1.6E-14 73.5 10.2 64 61-128 101-168 (168)
291 PF03029 ATP_bind_1: Conserved 99.1 6.3E-11 1.4E-15 83.0 3.7 68 62-133 92-171 (238)
292 PRK09602 translation-associate 99.1 1.6E-09 3.5E-14 81.1 11.4 78 18-95 2-113 (396)
293 PRK13768 GTPase; Provisional 99.1 1.5E-10 3.2E-15 82.0 5.4 80 61-141 97-185 (253)
294 COG5019 CDC3 Septin family pro 99.1 1.1E-09 2.3E-14 79.6 9.5 123 15-142 21-186 (373)
295 TIGR02836 spore_IV_A stage IV 99.1 2.2E-09 4.8E-14 79.7 11.1 130 15-147 15-212 (492)
296 KOG1532 GTPase XAB1, interacts 99.1 1.4E-09 3E-14 76.4 9.2 121 11-134 13-197 (366)
297 KOG0468 U5 snRNP-specific prot 99.1 1.2E-09 2.5E-14 84.6 8.8 112 15-131 126-262 (971)
298 PTZ00258 GTP-binding protein; 99.0 1.9E-09 4.1E-14 80.2 8.7 81 15-95 19-126 (390)
299 PRK14845 translation initiatio 99.0 1.6E-09 3.4E-14 88.9 8.7 97 28-132 472-592 (1049)
300 cd01900 YchF YchF subfamily. 99.0 1.4E-09 3E-14 77.5 7.5 76 20-95 1-103 (274)
301 PRK09866 hypothetical protein; 99.0 1.2E-08 2.6E-13 79.6 12.9 69 61-132 230-303 (741)
302 KOG2655 Septin family protein 99.0 5.6E-09 1.2E-13 76.3 9.7 122 16-142 20-182 (366)
303 KOG0458 Elongation factor 1 al 99.0 5.4E-09 1.2E-13 79.8 9.8 125 15-142 175-341 (603)
304 smart00053 DYNc Dynamin, GTPas 99.0 2.6E-08 5.7E-13 69.8 11.8 69 61-133 125-207 (240)
305 PRK09601 GTP-binding protein Y 99.0 5.1E-09 1.1E-13 77.2 8.6 78 18-95 3-107 (364)
306 COG0050 TufB GTPases - transla 98.9 5.4E-09 1.2E-13 74.1 7.3 127 15-146 10-164 (394)
307 cd01858 NGP_1 NGP-1. Autoanti 98.9 7.8E-09 1.7E-13 68.1 7.3 55 15-70 100-156 (157)
308 cd04178 Nucleostemin_like Nucl 98.9 8.7E-09 1.9E-13 68.9 7.0 55 15-70 115-171 (172)
309 COG5192 BMS1 GTP-binding prote 98.9 1.2E-08 2.5E-13 78.3 8.2 120 15-141 67-187 (1077)
310 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 1.3E-08 2.9E-13 65.8 6.5 52 19-71 85-138 (141)
311 COG3276 SelB Selenocysteine-sp 98.8 3.8E-08 8.3E-13 73.2 9.2 119 19-141 2-126 (447)
312 KOG0464 Elongation factor G [T 98.8 1.5E-09 3.2E-14 80.4 1.4 130 13-147 33-186 (753)
313 KOG1486 GTP-binding protein DR 98.8 9.2E-08 2E-12 66.7 9.8 88 14-101 59-156 (364)
314 KOG3905 Dynein light intermedi 98.8 7.1E-08 1.5E-12 69.5 9.4 86 15-102 50-145 (473)
315 KOG1954 Endocytosis/signaling 98.8 6.2E-08 1.3E-12 70.9 8.7 118 16-137 57-230 (532)
316 KOG1547 Septin CDC10 and relat 98.8 7.9E-08 1.7E-12 66.5 8.6 122 17-143 46-209 (336)
317 KOG3887 Predicted small GTPase 98.8 7E-08 1.5E-12 66.9 8.1 112 18-132 28-149 (347)
318 COG4917 EutP Ethanolamine util 98.7 1.2E-08 2.6E-13 63.5 3.7 101 18-134 2-106 (148)
319 KOG1144 Translation initiation 98.7 1.2E-08 2.6E-13 80.0 4.4 109 15-131 473-605 (1064)
320 KOG0461 Selenocysteine-specifi 98.7 7.4E-08 1.6E-12 69.9 7.8 114 14-133 4-137 (522)
321 cd01859 MJ1464 MJ1464. This f 98.7 7.1E-08 1.5E-12 63.4 6.9 56 15-70 99-155 (156)
322 PF00503 G-alpha: G-protein al 98.7 1E-07 2.2E-12 71.6 8.4 86 47-132 221-317 (389)
323 PF05783 DLIC: Dynein light in 98.7 2.3E-07 5E-12 70.8 10.2 86 15-102 23-118 (472)
324 PRK09435 membrane ATPase/prote 98.7 1.4E-07 3E-12 69.1 8.5 75 59-145 147-225 (332)
325 cd01855 YqeH YqeH. YqeH is an 98.7 5.6E-08 1.2E-12 65.9 5.8 54 16-70 126-189 (190)
326 cd01856 YlqF YlqF. Proteins o 98.7 1.1E-07 2.5E-12 63.4 7.0 56 15-71 113-170 (171)
327 PRK09563 rbgA GTPase YlqF; Rev 98.6 1.3E-07 2.8E-12 68.3 7.2 56 15-71 119-176 (287)
328 COG1161 Predicted GTPases [Gen 98.6 1.2E-07 2.5E-12 69.5 6.8 61 11-71 126-187 (322)
329 KOG0467 Translation elongation 98.6 1.7E-07 3.6E-12 73.8 7.4 112 14-130 6-136 (887)
330 TIGR03596 GTPase_YlqF ribosome 98.6 1.4E-07 3E-12 67.8 6.3 56 15-71 116-173 (276)
331 KOG0099 G protein subunit Galp 98.6 2E-07 4.3E-12 65.4 6.6 84 50-133 191-284 (379)
332 TIGR00092 GTP-binding protein 98.6 7E-07 1.5E-11 66.1 9.2 78 18-95 3-108 (368)
333 cd01849 YlqF_related_GTPase Yl 98.6 2.6E-07 5.7E-12 60.7 6.2 53 15-70 98-154 (155)
334 TIGR00750 lao LAO/AO transport 98.5 1.4E-06 3.1E-11 63.3 10.3 65 59-135 125-189 (300)
335 COG0012 Predicted GTPase, prob 98.5 8.3E-07 1.8E-11 65.1 8.8 79 17-95 2-108 (372)
336 COG5257 GCD11 Translation init 98.5 2.2E-07 4.7E-12 66.9 5.7 118 15-135 8-157 (415)
337 KOG0465 Mitochondrial elongati 98.5 1.4E-07 3.1E-12 72.6 4.9 114 15-134 37-172 (721)
338 cd01851 GBP Guanylate-binding 98.5 3.5E-06 7.6E-11 58.7 11.5 85 16-100 6-107 (224)
339 TIGR03348 VI_IcmF type VI secr 98.5 4.9E-07 1.1E-11 76.2 8.4 110 20-131 114-256 (1169)
340 KOG0085 G protein subunit Galp 98.5 8E-08 1.7E-12 66.3 1.9 86 48-133 186-281 (359)
341 COG1703 ArgK Putative periplas 98.5 1E-06 2.3E-11 62.9 7.4 82 60-153 143-227 (323)
342 KOG2486 Predicted GTPase [Gene 98.4 1E-06 2.2E-11 62.2 7.2 114 14-132 133-262 (320)
343 KOG0460 Mitochondrial translat 98.4 4.6E-07 1E-11 65.7 5.5 116 16-135 53-187 (449)
344 KOG1491 Predicted GTP-binding 98.4 2.9E-06 6.2E-11 61.6 8.2 81 15-95 18-125 (391)
345 TIGR00157 ribosome small subun 98.3 1.8E-06 4E-11 60.9 6.7 58 72-133 24-82 (245)
346 cd03112 CobW_like The function 98.3 3.4E-06 7.3E-11 55.7 7.5 21 20-40 3-23 (158)
347 PRK12288 GTPase RsgA; Reviewed 98.3 1.1E-06 2.3E-11 65.0 5.6 54 19-75 207-271 (347)
348 PRK12289 GTPase RsgA; Reviewed 98.3 2E-06 4.4E-11 63.6 6.4 23 19-41 174-196 (352)
349 COG1618 Predicted nucleotide k 98.3 1.2E-05 2.5E-10 52.7 8.8 25 15-39 3-27 (179)
350 KOG0448 Mitofusin 1 GTPase, in 98.3 2E-05 4.3E-10 61.9 11.5 119 10-133 102-276 (749)
351 PF03193 DUF258: Protein of un 98.3 8.2E-07 1.8E-11 58.5 3.5 24 18-41 36-59 (161)
352 PF03308 ArgK: ArgK protein; 98.3 1.2E-06 2.7E-11 61.5 4.2 119 15-145 27-195 (266)
353 KOG3859 Septins (P-loop GTPase 98.2 1.9E-06 4.1E-11 61.1 4.8 121 17-142 42-200 (406)
354 TIGR00157 ribosome small subun 98.2 3.8E-06 8.3E-11 59.3 6.0 53 18-74 121-184 (245)
355 TIGR03597 GTPase_YqeH ribosome 98.2 3.4E-06 7.3E-11 62.8 5.5 55 17-72 154-215 (360)
356 PF00448 SRP54: SRP54-type pro 98.2 8.7E-06 1.9E-10 55.6 7.1 79 60-145 83-168 (196)
357 KOG0447 Dynamin-like GTP bindi 98.1 5.5E-05 1.2E-09 58.5 11.0 79 61-142 412-505 (980)
358 PRK13796 GTPase YqeH; Provisio 98.1 5.9E-06 1.3E-10 61.6 5.8 54 17-71 160-220 (365)
359 PF05621 TniB: Bacterial TniB 98.1 2.9E-05 6.4E-10 55.9 9.0 38 4-41 48-85 (302)
360 PRK10416 signal recognition pa 98.1 4.1E-05 8.8E-10 56.1 9.7 125 16-147 113-289 (318)
361 COG5258 GTPBP1 GTPase [General 98.1 2.3E-06 5E-11 63.1 3.2 123 14-141 114-278 (527)
362 TIGR01425 SRP54_euk signal rec 98.1 2.4E-05 5.2E-10 59.2 8.6 109 17-132 100-253 (429)
363 cd03115 SRP The signal recogni 98.1 9.3E-05 2E-09 49.4 10.4 81 60-147 82-169 (173)
364 cd01854 YjeQ_engC YjeQ/EngC. 98.1 1.5E-05 3.2E-10 57.6 6.9 57 18-75 162-227 (287)
365 TIGR00064 ftsY signal recognit 98.1 4.7E-05 1E-09 54.6 9.2 82 59-147 153-247 (272)
366 PF02492 cobW: CobW/HypB/UreG, 98.1 1.4E-05 3.1E-10 53.7 6.2 76 60-141 84-165 (178)
367 PRK00098 GTPase RsgA; Reviewed 98.0 1.5E-05 3.3E-10 57.9 6.2 25 17-41 164-188 (298)
368 KOG1534 Putative transcription 98.0 7E-06 1.5E-10 56.0 3.8 76 60-139 97-185 (273)
369 COG1162 Predicted GTPases [Gen 98.0 1.2E-05 2.7E-10 57.8 5.3 23 18-40 165-187 (301)
370 PRK14722 flhF flagellar biosyn 98.0 0.00014 3E-09 54.4 10.9 25 15-39 135-159 (374)
371 PRK14974 cell division protein 98.0 6.4E-05 1.4E-09 55.4 8.8 80 60-146 222-308 (336)
372 KOG0705 GTPase-activating prot 97.9 1E-05 2.2E-10 62.1 3.9 111 15-130 28-141 (749)
373 KOG0410 Predicted GTP binding 97.9 2.6E-05 5.6E-10 56.5 5.2 119 12-132 173-308 (410)
374 PF13401 AAA_22: AAA domain; P 97.9 1.3E-05 2.7E-10 50.9 3.2 24 17-40 4-27 (131)
375 cd00009 AAA The AAA+ (ATPases 97.9 0.00035 7.5E-09 44.4 10.0 34 7-40 9-42 (151)
376 cd01857 HSR1_MMR1 HSR1/MMR1. 97.9 2.5E-05 5.5E-10 50.4 4.5 54 79-135 6-59 (141)
377 KOG1487 GTP-binding protein DR 97.9 6.6E-05 1.4E-09 53.0 6.7 89 17-105 59-157 (358)
378 PRK11537 putative GTP-binding 97.9 0.00015 3.3E-09 53.2 8.8 67 61-133 91-165 (318)
379 cd01983 Fer4_NifH The Fer4_Nif 97.8 0.00032 6.9E-09 41.6 8.7 97 20-126 2-99 (99)
380 cd01858 NGP_1 NGP-1. Autoanti 97.8 2.6E-05 5.5E-10 51.3 4.0 59 81-142 5-63 (157)
381 KOG1143 Predicted translation 97.8 3.7E-05 7.9E-10 56.9 4.9 120 17-141 167-326 (591)
382 KOG4273 Uncharacterized conser 97.8 0.00011 2.5E-09 51.6 7.1 114 17-133 4-124 (418)
383 COG3523 IcmF Type VI protein s 97.8 5.4E-05 1.2E-09 63.4 6.4 111 20-132 128-270 (1188)
384 KOG0459 Polypeptide release fa 97.8 2.2E-05 4.8E-10 58.3 3.5 117 15-132 77-231 (501)
385 KOG1424 Predicted GTP-binding 97.8 2.8E-05 6E-10 59.3 3.9 54 17-71 314-369 (562)
386 PRK05703 flhF flagellar biosyn 97.8 0.0006 1.3E-08 52.0 10.9 80 60-146 299-386 (424)
387 COG0523 Putative GTPases (G3E 97.7 0.00035 7.5E-09 51.3 8.9 116 20-141 4-168 (323)
388 PRK12289 GTPase RsgA; Reviewed 97.7 8.3E-05 1.8E-09 55.2 5.4 58 80-141 85-143 (352)
389 PF13207 AAA_17: AAA domain; P 97.7 3.5E-05 7.6E-10 48.2 3.0 22 19-40 1-22 (121)
390 PRK08118 topology modulation p 97.7 3.6E-05 7.7E-10 51.3 3.1 22 18-39 2-23 (167)
391 cd01859 MJ1464 MJ1464. This f 97.7 5.2E-05 1.1E-09 49.7 3.8 55 74-133 2-56 (156)
392 PF06858 NOG1: Nucleolar GTP-b 97.7 8.3E-05 1.8E-09 40.1 3.8 44 84-129 13-58 (58)
393 PRK10867 signal recognition pa 97.7 0.00049 1.1E-08 52.5 9.3 80 60-146 183-269 (433)
394 TIGR02475 CobW cobalamin biosy 97.7 0.00034 7.5E-09 51.8 8.3 77 61-143 93-198 (341)
395 PRK13695 putative NTPase; Prov 97.7 0.00024 5.2E-09 47.5 6.9 22 18-39 1-22 (174)
396 PRK00771 signal recognition pa 97.7 9.2E-05 2E-09 56.4 5.3 24 15-38 93-116 (437)
397 COG0563 Adk Adenylate kinase a 97.7 4.1E-05 8.8E-10 51.5 3.1 23 18-40 1-23 (178)
398 KOG2423 Nucleolar GTPase [Gene 97.7 2.7E-05 5.9E-10 57.9 2.2 67 4-71 294-362 (572)
399 COG1419 FlhF Flagellar GTP-bin 97.7 0.00038 8.1E-09 52.2 8.1 109 16-132 202-352 (407)
400 TIGR00959 ffh signal recogniti 97.6 0.00092 2E-08 51.0 10.3 81 60-147 182-269 (428)
401 PF13671 AAA_33: AAA domain; P 97.6 4.5E-05 9.7E-10 49.1 2.9 20 20-39 2-21 (143)
402 PRK07261 topology modulation p 97.6 5E-05 1.1E-09 50.8 3.0 22 18-39 1-22 (171)
403 cd01855 YqeH YqeH. YqeH is an 97.6 8.6E-05 1.9E-09 50.3 4.2 54 74-134 24-77 (190)
404 PF13555 AAA_29: P-loop contai 97.6 6.6E-05 1.4E-09 41.4 2.9 20 19-38 25-44 (62)
405 COG1126 GlnQ ABC-type polar am 97.6 5E-05 1.1E-09 52.2 2.9 26 15-40 26-51 (240)
406 PRK00098 GTPase RsgA; Reviewed 97.6 0.00011 2.4E-09 53.4 4.6 49 81-132 77-125 (298)
407 cd02038 FleN-like FleN is a me 97.6 0.00064 1.4E-08 43.8 7.7 105 21-131 4-110 (139)
408 KOG0469 Elongation factor 2 [T 97.6 0.00024 5.1E-09 54.6 6.3 111 16-131 18-163 (842)
409 PRK12727 flagellar biosynthesi 97.6 0.00052 1.1E-08 53.4 8.2 24 16-39 349-372 (559)
410 PF05729 NACHT: NACHT domain 97.5 0.00064 1.4E-08 44.5 7.4 21 20-40 3-23 (166)
411 KOG2484 GTPase [General functi 97.5 7.9E-05 1.7E-09 55.3 3.0 57 15-71 250-307 (435)
412 PRK12724 flagellar biosynthesi 97.5 0.00066 1.4E-08 51.4 7.7 23 17-39 223-245 (432)
413 COG1136 SalX ABC-type antimicr 97.5 9.2E-05 2E-09 51.4 2.8 26 15-40 29-54 (226)
414 PRK12726 flagellar biosynthesi 97.5 0.00076 1.6E-08 50.5 7.8 24 16-39 205-228 (407)
415 PF03266 NTPase_1: NTPase; In 97.5 0.00015 3.3E-09 48.3 3.8 21 19-39 1-21 (168)
416 cd01854 YjeQ_engC YjeQ/EngC. 97.5 0.00026 5.6E-09 51.3 5.2 51 79-133 73-124 (287)
417 cd02019 NK Nucleoside/nucleoti 97.5 0.00013 2.9E-09 41.2 2.9 21 20-40 2-22 (69)
418 PF00005 ABC_tran: ABC transpo 97.5 0.00013 2.8E-09 46.7 3.1 26 15-40 9-34 (137)
419 PRK14723 flhF flagellar biosyn 97.5 0.0014 3.1E-08 53.1 9.5 23 17-39 185-207 (767)
420 COG3640 CooC CO dehydrogenase 97.5 0.00085 1.8E-08 46.8 7.1 63 81-148 152-214 (255)
421 cd02042 ParA ParA and ParB of 97.4 0.0017 3.8E-08 39.4 7.9 81 20-108 2-84 (104)
422 PF13191 AAA_16: AAA ATPase do 97.4 0.00014 2.9E-09 48.7 3.1 28 12-39 19-46 (185)
423 cd02036 MinD Bacterial cell di 97.4 0.0056 1.2E-07 40.7 10.9 81 62-148 64-147 (179)
424 smart00382 AAA ATPases associa 97.4 0.00018 3.9E-09 45.4 3.3 25 17-41 2-26 (148)
425 PRK05480 uridine/cytidine kina 97.4 0.00018 3.8E-09 49.6 3.5 26 14-39 3-28 (209)
426 PF00004 AAA: ATPase family as 97.4 0.00015 3.2E-09 45.8 2.9 21 20-40 1-21 (132)
427 PF13521 AAA_28: AAA domain; P 97.4 0.00011 2.3E-09 48.6 2.3 22 19-40 1-22 (163)
428 PF04665 Pox_A32: Poxvirus A32 97.4 0.00012 2.6E-09 51.4 2.6 30 11-40 7-36 (241)
429 PRK00411 cdc6 cell division co 97.4 0.0011 2.4E-08 49.9 7.9 26 15-40 53-78 (394)
430 PRK10078 ribose 1,5-bisphospho 97.4 0.00018 4E-09 48.6 3.2 22 19-40 4-25 (186)
431 TIGR02322 phosphon_PhnN phosph 97.4 0.00017 3.7E-09 48.3 2.9 21 19-39 3-23 (179)
432 PF03205 MobB: Molybdopterin g 97.3 0.00018 4E-09 46.5 2.8 22 19-40 2-23 (140)
433 KOG2485 Conserved ATP/GTP bind 97.3 0.00036 7.8E-09 50.4 4.5 58 14-71 140-206 (335)
434 cd00071 GMPK Guanosine monopho 97.3 0.0002 4.3E-09 46.1 2.9 21 20-40 2-22 (137)
435 PRK06217 hypothetical protein; 97.3 0.0002 4.3E-09 48.3 3.1 22 18-39 2-23 (183)
436 TIGR00101 ureG urease accessor 97.3 0.00021 4.5E-09 49.0 3.2 23 17-39 1-23 (199)
437 TIGR00235 udk uridine kinase. 97.3 0.00023 5E-09 49.0 3.3 25 15-39 4-28 (207)
438 PF13238 AAA_18: AAA domain; P 97.3 0.0002 4.4E-09 45.0 2.8 21 20-40 1-21 (129)
439 PF00437 T2SE: Type II/IV secr 97.3 0.00023 5E-09 50.9 3.4 25 15-39 125-149 (270)
440 cd01849 YlqF_related_GTPase Yl 97.3 0.00044 9.4E-09 45.3 4.4 44 86-134 1-45 (155)
441 PRK06731 flhF flagellar biosyn 97.3 0.0036 7.7E-08 44.9 9.2 123 17-146 75-240 (270)
442 COG1116 TauB ABC-type nitrate/ 97.3 0.00022 4.9E-09 49.9 2.9 26 15-40 27-52 (248)
443 cd00820 PEPCK_HprK Phosphoenol 97.3 0.00025 5.5E-09 43.6 2.8 22 17-38 15-36 (107)
444 PRK14738 gmk guanylate kinase; 97.3 0.00031 6.7E-09 48.4 3.5 25 16-40 12-36 (206)
445 TIGR03263 guanyl_kin guanylate 97.3 0.00026 5.5E-09 47.5 3.0 22 19-40 3-24 (180)
446 TIGR03596 GTPase_YlqF ribosome 97.3 0.00021 4.6E-09 51.4 2.6 59 69-134 5-64 (276)
447 PHA00729 NTP-binding motif con 97.3 0.0005 1.1E-08 47.8 4.3 31 9-39 9-39 (226)
448 PRK06547 hypothetical protein; 97.3 0.00052 1.1E-08 45.9 4.3 29 11-39 9-37 (172)
449 cd01131 PilT Pilus retraction 97.2 0.00026 5.7E-09 48.4 2.9 21 20-40 4-24 (198)
450 PRK00300 gmk guanylate kinase; 97.2 0.00036 7.8E-09 47.8 3.5 26 15-40 3-28 (205)
451 PF09547 Spore_IV_A: Stage IV 97.2 0.0062 1.3E-07 46.2 10.1 24 16-39 16-39 (492)
452 PRK03839 putative kinase; Prov 97.2 0.00031 6.6E-09 47.2 3.1 21 19-39 2-22 (180)
453 COG1120 FepC ABC-type cobalami 97.2 0.00027 5.8E-09 50.1 2.9 25 15-39 26-50 (258)
454 cd01130 VirB11-like_ATPase Typ 97.2 0.00032 6.9E-09 47.5 3.1 25 16-40 24-48 (186)
455 PRK14530 adenylate kinase; Pro 97.2 0.00035 7.5E-09 48.4 3.3 21 18-38 4-24 (215)
456 COG0194 Gmk Guanylate kinase [ 97.2 0.00031 6.7E-09 47.2 2.9 25 17-41 4-28 (191)
457 PRK14737 gmk guanylate kinase; 97.2 0.00031 6.8E-09 47.6 2.9 25 16-40 3-27 (186)
458 cd02023 UMPK Uridine monophosp 97.2 0.0003 6.5E-09 48.0 2.9 20 20-39 2-21 (198)
459 PF07728 AAA_5: AAA domain (dy 97.2 0.00035 7.5E-09 44.8 3.0 21 19-39 1-21 (139)
460 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.2 0.00034 7.4E-09 48.4 3.2 26 15-40 28-53 (218)
461 PRK08233 hypothetical protein; 97.2 0.00039 8.4E-09 46.5 3.3 23 17-39 3-25 (182)
462 cd03238 ABC_UvrA The excision 97.2 0.00041 8.9E-09 46.6 3.3 26 14-39 18-43 (176)
463 COG3840 ThiQ ABC-type thiamine 97.2 0.00037 8E-09 46.9 2.9 25 15-39 23-47 (231)
464 cd03222 ABC_RNaseL_inhibitor T 97.2 0.00038 8.2E-09 46.8 3.0 26 15-40 23-48 (177)
465 PRK14532 adenylate kinase; Pro 97.2 0.00039 8.5E-09 47.0 3.1 21 19-39 2-22 (188)
466 cd03225 ABC_cobalt_CbiO_domain 97.2 0.0004 8.7E-09 47.8 3.2 26 15-40 25-50 (211)
467 TIGR00554 panK_bact pantothena 97.2 0.00063 1.4E-08 49.3 4.2 25 13-37 58-82 (290)
468 cd03226 ABC_cobalt_CbiO_domain 97.2 0.00041 8.8E-09 47.6 3.1 26 15-40 24-49 (205)
469 COG1121 ZnuC ABC-type Mn/Zn tr 97.2 0.00036 7.9E-09 49.3 2.9 24 16-39 29-52 (254)
470 TIGR01360 aden_kin_iso1 adenyl 97.2 0.00035 7.7E-09 47.0 2.8 21 18-38 4-24 (188)
471 TIGR00960 3a0501s02 Type II (G 97.2 0.00042 9.1E-09 47.9 3.1 26 15-40 27-52 (216)
472 PRK14531 adenylate kinase; Pro 97.2 0.00044 9.5E-09 46.7 3.1 22 18-39 3-24 (183)
473 TIGR01166 cbiO cobalt transpor 97.1 0.00043 9.4E-09 46.9 3.1 26 15-40 16-41 (190)
474 TIGR00073 hypB hydrogenase acc 97.1 0.0005 1.1E-08 47.3 3.5 29 12-40 17-45 (207)
475 cd03259 ABC_Carb_Solutes_like 97.1 0.00044 9.6E-09 47.7 3.2 26 15-40 24-49 (213)
476 cd04178 Nucleostemin_like Nucl 97.1 0.00044 9.5E-09 46.3 3.0 52 86-142 1-54 (172)
477 cd03293 ABC_NrtD_SsuB_transpor 97.1 0.00044 9.6E-09 47.9 3.2 26 15-40 28-53 (220)
478 TIGR02673 FtsE cell division A 97.1 0.00045 9.7E-09 47.6 3.2 26 15-40 26-51 (214)
479 cd03261 ABC_Org_Solvent_Resist 97.1 0.00044 9.6E-09 48.4 3.2 26 15-40 24-49 (235)
480 cd03292 ABC_FtsE_transporter F 97.1 0.00046 1E-08 47.6 3.2 26 15-40 25-50 (214)
481 PRK04195 replication factor C 97.1 0.00045 9.7E-09 53.5 3.4 24 17-40 39-62 (482)
482 TIGR03608 L_ocin_972_ABC putat 97.1 0.00049 1.1E-08 47.2 3.2 25 16-40 23-47 (206)
483 cd03269 ABC_putative_ATPase Th 97.1 0.00049 1.1E-08 47.3 3.2 26 15-40 24-49 (210)
484 cd03265 ABC_DrrA DrrA is the A 97.1 0.00049 1.1E-08 47.7 3.2 26 15-40 24-49 (220)
485 cd03229 ABC_Class3 This class 97.1 0.00051 1.1E-08 46.1 3.2 26 15-40 24-49 (178)
486 PRK13851 type IV secretion sys 97.1 0.00045 9.8E-09 51.2 3.1 26 15-40 160-185 (344)
487 PRK13949 shikimate kinase; Pro 97.1 0.00049 1.1E-08 45.9 3.1 22 18-39 2-23 (169)
488 cd03264 ABC_drug_resistance_li 97.1 0.00044 9.6E-09 47.6 2.9 23 17-40 26-48 (211)
489 PTZ00088 adenylate kinase 1; P 97.1 0.00052 1.1E-08 48.0 3.3 24 16-39 5-28 (229)
490 COG3638 ABC-type phosphate/pho 97.1 0.00044 9.6E-09 48.2 2.9 23 17-39 30-52 (258)
491 cd02025 PanK Pantothenate kina 97.1 0.00041 8.8E-09 48.3 2.7 20 20-39 2-21 (220)
492 cd03258 ABC_MetN_methionine_tr 97.1 0.00049 1.1E-08 48.1 3.2 26 15-40 29-54 (233)
493 TIGR02315 ABC_phnC phosphonate 97.1 0.00049 1.1E-08 48.4 3.2 26 15-40 26-51 (243)
494 cd03262 ABC_HisP_GlnQ_permease 97.1 0.00052 1.1E-08 47.2 3.2 26 15-40 24-49 (213)
495 PF01637 Arch_ATPase: Archaeal 97.1 0.00062 1.4E-08 47.0 3.6 25 16-40 19-43 (234)
496 PRK10751 molybdopterin-guanine 97.1 0.00045 9.8E-09 46.2 2.7 24 17-40 6-29 (173)
497 cd03111 CpaE_like This protein 97.1 0.0068 1.5E-07 37.2 7.8 97 23-127 6-106 (106)
498 cd03224 ABC_TM1139_LivF_branch 97.1 0.00051 1.1E-08 47.6 3.1 26 15-40 24-49 (222)
499 cd03263 ABC_subfamily_A The AB 97.1 0.00055 1.2E-08 47.4 3.2 26 15-40 26-51 (220)
500 TIGR02211 LolD_lipo_ex lipopro 97.1 0.00056 1.2E-08 47.4 3.2 26 15-40 29-54 (221)
No 1
>PLN00223 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=6.3e-32 Score=182.12 Aligned_cols=153 Identities=99% Similarity=1.457 Sum_probs=134.3
Q ss_pred CcchHHHHHhhcccccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHh
Q 031797 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (153)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~ 80 (153)
||+.++.+.++....+.+||+++|++++|||||++++..+.+....||.+.....+...+..+.+||+||++.++..+..
T Consensus 1 m~~~~~~~~~~~~~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~ 80 (181)
T PLN00223 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
T ss_pred CchHHHHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHH
Confidence 78777777776666778999999999999999999998877777778888887778888899999999999999999999
Q ss_pred hhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCCCcccCCCC
Q 031797 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153 (153)
Q Consensus 81 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~ 153 (153)
+++++|++++|+|+++++++.....++...+.....++.|+++++||+|+.+....+++++.+++..+..|.|
T Consensus 81 ~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~ 153 (181)
T PLN00223 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153 (181)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCce
Confidence 9999999999999999999998888888877655456899999999999998888899999999887665554
No 2
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.98 E-value=4e-31 Score=178.36 Aligned_cols=152 Identities=80% Similarity=1.267 Sum_probs=131.9
Q ss_pred CcchHHHHHhhcccccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHh
Q 031797 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (153)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~ 80 (153)
||+.+.++.+.....+.+||+++|++|+|||||++++..+.+....+|.+.....+...+..+.+||+||++.++..+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~ 80 (182)
T PTZ00133 1 MGLWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRH 80 (182)
T ss_pred CchHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 78888888888888888999999999999999999998777776777888777777788899999999999999999999
Q ss_pred hhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCCCcccCCC
Q 031797 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH 152 (153)
Q Consensus 81 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~ 152 (153)
+++++|++++|+|+++++++.....++...+......+.|+++++||.|+.+.....++++.+++..+..++
T Consensus 81 ~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~ 152 (182)
T PTZ00133 81 YYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRN 152 (182)
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCc
Confidence 999999999999999999999888888887665444578999999999998777777888888887665544
No 3
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.5e-31 Score=174.97 Aligned_cols=131 Identities=26% Similarity=0.501 Sum_probs=115.1
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEEE----EEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~----~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
.+-+||+++|++|||||+|+.||..+.+.+ +..|+|+.... +..+..++++|||.|+++|+....+++|++|++|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 456999999999999999999999999885 57788887654 3346689999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc-----CCHHHHHHHhCCC
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLH 146 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~-----~~~~~~~~~~~~~ 146 (153)
+|||+++.+||..+..|+.++-. ....++|.++||||+|+.+. +++++++.+++++
T Consensus 87 ~vyDiT~~~SF~~v~~Wi~Ei~~-~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~ 147 (205)
T KOG0084|consen 87 FVYDITKQESFNNVKRWIQEIDR-YASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIP 147 (205)
T ss_pred EEEEcccHHHhhhHHHHHHHhhh-hccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCc
Confidence 99999999999999998888744 44577999999999999764 4678999999998
No 4
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=6.4e-30 Score=171.54 Aligned_cols=141 Identities=89% Similarity=1.363 Sum_probs=122.1
Q ss_pred ccccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEE
Q 031797 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 92 (153)
...+.+||+++|++|+|||||++++..+.+....||.+.....+......+.+||+||++.+...+..+++++|++++|+
T Consensus 9 ~~~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~ 88 (175)
T smart00177 9 FGNKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVV 88 (175)
T ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEE
Confidence 44667999999999999999999998777766678888777777778899999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCCCcccCCCC
Q 031797 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~ 153 (153)
|+++++++.....++...+.....++.|+++|+||.|+.+.....++.+.+++..+.+++|
T Consensus 89 D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~ 149 (175)
T smart00177 89 DSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNW 149 (175)
T ss_pred ECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcE
Confidence 9999999999999998887664446799999999999988777788888888877666554
No 5
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1e-29 Score=166.13 Aligned_cols=153 Identities=84% Similarity=1.313 Sum_probs=147.5
Q ss_pred CcchHHHHHhhcccccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHh
Q 031797 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (153)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~ 80 (153)
||..+++++......+..+|+++|--++||||++.++-.+++....||.|.+...+.+++.++++||.+|+.+++..|..
T Consensus 1 MG~~~s~~~~~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~ 80 (181)
T KOG0070|consen 1 MGLIFSKLFSGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKH 80 (181)
T ss_pred CcchhhhhhhhccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhh
Confidence 89999999999999999999999999999999999998888888899999999999999999999999999999999999
Q ss_pred hhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCCCcccCCCC
Q 031797 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153 (153)
Q Consensus 81 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~ 153 (153)
++++.+++|||+|.++.+.+.+..+.+..++........|+++++||.|++++....++.+.+++..++.|+|
T Consensus 81 Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w 153 (181)
T KOG0070|consen 81 YFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNW 153 (181)
T ss_pred hccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCc
Confidence 9999999999999999999999999999999887778999999999999999999999999999999999998
No 6
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=4.5e-29 Score=166.42 Aligned_cols=138 Identities=76% Similarity=1.234 Sum_probs=117.6
Q ss_pred ccccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEE
Q 031797 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 92 (153)
...+.++|+++|++|+|||||++++....+....+|.+.....+...+..+.+||+||++.++..+..+++++|++++|+
T Consensus 5 ~~~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~ 84 (168)
T cd04149 5 FGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV 84 (168)
T ss_pred cCCCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence 34567999999999999999999998877766677888777777778899999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCCCcccC
Q 031797 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ 150 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~~~~~~ 150 (153)
|++++.++.+...++...+.....++.|+++|+||+|+.+....+++.+.+++..+..
T Consensus 85 D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~ 142 (168)
T cd04149 85 DSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRD 142 (168)
T ss_pred eCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCC
Confidence 9999999999999888887764446789999999999987666777777776655443
No 7
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.97 E-value=9.3e-29 Score=165.85 Aligned_cols=149 Identities=56% Similarity=1.030 Sum_probs=134.8
Q ss_pred HHHHHhhccc-ccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhc
Q 031797 5 FTKLFSKLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ 83 (153)
Q Consensus 5 ~~~~~~~~~~-~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~ 83 (153)
|+++++.... .+.++|+++|+.|+||||+++++.........||.+.....+...+..+.+||.+|+..++..|..+++
T Consensus 1 ~~~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~ 80 (175)
T PF00025_consen 1 FSSVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQ 80 (175)
T ss_dssp HHHHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHT
T ss_pred CHHHHHHhcccCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeecc
Confidence 3456666655 888999999999999999999999888777889999999999999999999999999999999999999
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCCCccc-CCCC
Q 031797 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-QRHW 153 (153)
Q Consensus 84 ~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~~~~~-~~~~ 153 (153)
++++++||+|+++.+.+.+....+..++......+.|+++++||.|+.+....+++.+.+++..+. .++|
T Consensus 81 ~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~ 151 (175)
T PF00025_consen 81 NADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPW 151 (175)
T ss_dssp TESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCE
T ss_pred ccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCce
Confidence 999999999999999999999999999887666789999999999999999999999999998886 5543
No 8
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.96 E-value=1.5e-28 Score=162.49 Aligned_cols=135 Identities=93% Similarity=1.381 Sum_probs=115.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCc
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~ 97 (153)
+||+++|.+|+|||||++++..+.+....||.+.....+......+.+||+||++++...+..+++++|++++|+|++++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~ 80 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH
Confidence 48999999999999999999877777667788877777777889999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCCCcccCCC
Q 031797 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH 152 (153)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~ 152 (153)
.++.....++...+......+.|+++++||+|+.+.....++.+.+++..+.++.
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~ 135 (159)
T cd04150 81 ERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRN 135 (159)
T ss_pred HHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCC
Confidence 9999998888888765444568999999999998766667777777776655443
No 9
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.1e-28 Score=162.21 Aligned_cols=135 Identities=21% Similarity=0.419 Sum_probs=117.5
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcc-ccCCceeeEEE--EEEE--cCEEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
.+.+|++++|+.+|||||||+||..+.|. .+.+|+|+.+. ++.. ...++++|||.|+++|+.+.++|+|++.+++
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav 99 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 99 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence 45599999999999999999999999987 56889998763 4444 4589999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc-----CCHHHHHHHhCCCccc
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLR 149 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~-----~~~~~~~~~~~~~~~~ 149 (153)
+|||+++..||+....|+....++....++.|++||||.||.+. ++.+..+++++..+.+
T Consensus 100 iVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~e 164 (221)
T KOG0094|consen 100 IVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIE 164 (221)
T ss_pred EEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEE
Confidence 99999999999999999999988877566889999999999875 3566778888875543
No 10
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.1e-28 Score=151.75 Aligned_cols=153 Identities=72% Similarity=1.200 Sum_probs=147.0
Q ss_pred CcchHHHHHhhcccccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHh
Q 031797 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (153)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~ 80 (153)
||..|++.+.+....+.++++.+|-.++||||++..+.-.+.....||+|+....+.+++.++.+||.+|++..+..|..
T Consensus 1 Mgn~~sk~~~k~f~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrh 80 (180)
T KOG0071|consen 1 MGNYMSKLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRH 80 (180)
T ss_pred CcchHHHHHHHHhCcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHh
Confidence 78888899989999999999999999999999999998888888899999999999999999999999999999999999
Q ss_pred hhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCCCcccCCCC
Q 031797 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153 (153)
Q Consensus 81 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~ 153 (153)
++.+..++|||+|..+.+.+++....+.++++.......|+++.+||.|++++...+++.+.+++..+++|.|
T Consensus 81 Yy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W 153 (180)
T KOG0071|consen 81 YYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNW 153 (180)
T ss_pred hccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCcc
Confidence 9999999999999999999999999999999988888999999999999999999999999999999999998
No 11
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=8.6e-29 Score=162.43 Aligned_cols=136 Identities=23% Similarity=0.440 Sum_probs=119.3
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeEEEEE--EE--cCEEEEEEEcCCCCCchhchHhhhcCCCEE
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETV--EY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~~~~~--~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 88 (153)
....+|++++|.+++|||||+.||..++|.+. .+|+|..+.+. .. ...++.||||.|+++|+.+.+.++|+++++
T Consensus 2 ~~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AA 81 (200)
T KOG0092|consen 2 ATREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAA 81 (200)
T ss_pred CcceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEE
Confidence 35679999999999999999999999999876 78888776543 33 348999999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc-----CCHHHHHHHhCCCcccC
Q 031797 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLRQ 150 (153)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~-----~~~~~~~~~~~~~~~~~ 150 (153)
|+|||+++.+||..+..|+.++-+... +++.+.++|||+|+.+. ++++.++++.++.+++.
T Consensus 82 ivvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ET 147 (200)
T KOG0092|consen 82 IVVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFET 147 (200)
T ss_pred EEEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEE
Confidence 999999999999999999999877665 88889999999999863 46889999999988764
No 12
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.96 E-value=2.8e-27 Score=158.59 Aligned_cols=142 Identities=55% Similarity=0.954 Sum_probs=119.2
Q ss_pred HHhhcccccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCE
Q 031797 8 LFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (153)
Q Consensus 8 ~~~~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (153)
.++.....+.++|+++|++|+|||||++++..+.+....+|.+.....+...+..+.+||+||++.+...+..+++++|+
T Consensus 6 ~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 85 (174)
T cd04153 6 LWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDA 85 (174)
T ss_pred HHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCE
Confidence 33433334579999999999999999999998887777778887777788888999999999999999889999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCCCccc
Q 031797 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR 149 (153)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~~~~~ 149 (153)
+++|+|+++.+++.....++..++......+.|+++++||+|+.+....+++.+.+++....
T Consensus 86 vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~ 147 (174)
T cd04153 86 VILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIR 147 (174)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccc
Confidence 99999999998898888888888766545679999999999998766667777777765443
No 13
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.96 E-value=1.7e-27 Score=152.46 Aligned_cols=149 Identities=47% Similarity=0.835 Sum_probs=133.5
Q ss_pred HHHHHhhcccccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcC
Q 031797 5 FTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN 84 (153)
Q Consensus 5 ~~~~~~~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~ 84 (153)
++-+......++.++|+++|..|+||||++++|.+.......||.+.+..+...++..+++||.+|+..++..|..|+..
T Consensus 4 lsilrk~k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfes 83 (185)
T KOG0073|consen 4 LSILRKQKLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFES 83 (185)
T ss_pred HHHHHHHHhhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhc
Confidence 33444444467799999999999999999999999887777999999999999999999999999999999999999999
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCCCcc-cCCCC
Q 031797 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHW 153 (153)
Q Consensus 85 ~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~~~~-~~~~~ 153 (153)
+|++|+|+|.+++.++++....+..++........|+++++||.|+...-..+++...+++..+ +...|
T Consensus 84 tdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~ 153 (185)
T KOG0073|consen 84 TDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHW 153 (185)
T ss_pred cCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCc
Confidence 9999999999999999999999998888777778999999999999999899999999998888 55554
No 14
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.95 E-value=7.3e-27 Score=156.31 Aligned_cols=134 Identities=51% Similarity=0.886 Sum_probs=112.6
Q ss_pred ccccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEE
Q 031797 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 92 (153)
...+.++|+++|++|+|||||++++.+..+....+|.+.....+...+.++.+||+||++.+...+..+++++|++++|+
T Consensus 10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVV 89 (173)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEE
Confidence 34567999999999999999999999886666677777766667777899999999999998888889999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCCC
Q 031797 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 146 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~~ 146 (153)
|++++.++.....++..++......+.|+++|+||+|+.+....+++.+.++..
T Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~ 143 (173)
T cd04154 90 DSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELD 143 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCcc
Confidence 999999998888888777665445689999999999998766666666666543
No 15
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.95 E-value=8.5e-27 Score=154.86 Aligned_cols=128 Identities=41% Similarity=0.731 Sum_probs=109.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCcc-ccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCc
Q 031797 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~ 97 (153)
.|+++|++|+|||||++++.+..+. ...||.+.....+...+.++.+||+||++.+...+..+++++|++++|+|++++
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~ 80 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADS 80 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCH
Confidence 4799999999999999999988765 346777777777778889999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCCCcc
Q 031797 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 148 (153)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~~~~ 148 (153)
.++.....++..+.... +++|+++|+||+|+.+.....++.+.+++..+
T Consensus 81 ~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~ 129 (164)
T cd04162 81 ERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPI 129 (164)
T ss_pred HHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhh
Confidence 99988888887776443 68999999999999887777777777666665
No 16
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.3e-27 Score=154.95 Aligned_cols=135 Identities=21% Similarity=0.398 Sum_probs=118.7
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEE----EEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~----~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
...+|++++|+.|||||+|+.+|....|.+ ...|.|+++. .++.+..++++||+.|+++|+....++++++.++|
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 456899999999999999999999988875 4678888764 35557799999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc-----cCCHHHHHHHhCCCcccC
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN-----AMNAAEITDKLGLHSLRQ 150 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~-----~~~~~~~~~~~~~~~~~~ 150 (153)
+|||+++.++|..+..|+.++.+.. .++..+++++||+|+.. .++.+.++++.+|.+++.
T Consensus 84 LVydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmET 148 (216)
T KOG0098|consen 84 LVYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMET 148 (216)
T ss_pred EEEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehh
Confidence 9999999999999999999986654 47889999999999974 357899999999998853
No 17
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.95 E-value=1.2e-26 Score=154.84 Aligned_cols=127 Identities=63% Similarity=1.079 Sum_probs=109.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcc
Q 031797 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 98 (153)
||+++|++++|||||++++.+..+..+.+|.+.....+...+..+.+||+||+..+...+..+++++|++++|+|+++++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~ 80 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD 80 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH
Confidence 68999999999999999999987766778888777777888999999999999999989999999999999999999999
Q ss_pred cHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCC
Q 031797 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL 145 (153)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~ 145 (153)
++.+...++..++......+.|+++++||+|+.+....+++.+.+.+
T Consensus 81 s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~ 127 (169)
T cd04158 81 RVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSL 127 (169)
T ss_pred HHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCC
Confidence 99999998888876544456899999999999876666666555443
No 18
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4e-27 Score=156.99 Aligned_cols=137 Identities=24% Similarity=0.466 Sum_probs=116.9
Q ss_pred ccccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEE--EEEE--cCEEEEEEEcCCCCCchhchHhhhcCCCE
Q 031797 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (153)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (153)
...+.+||+++|.++||||+++.+|..+.+.. ...|.++.+. ++.. ...++++||+.|+++|+....+++++|.+
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 44667999999999999999999999988874 4678888764 3444 55899999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc-----CCHHHHHHHhCCCcccC
Q 031797 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLRQ 150 (153)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~-----~~~~~~~~~~~~~~~~~ 150 (153)
+++|||+++..||+++..| ...+.++....+|+++||||+|+... +..+.+|+++|+.+++.
T Consensus 88 i~LvyDitne~Sfeni~~W-~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~Et 154 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNW-IKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFET 154 (207)
T ss_pred eEEEEEccchHHHHHHHHH-HHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEc
Confidence 9999999999999999995 44556655578999999999999874 35889999999988764
No 19
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=1.8e-26 Score=155.99 Aligned_cols=135 Identities=37% Similarity=0.667 Sum_probs=117.0
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEEC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~ 94 (153)
.+.++|+++|++|+|||||++++.+..+....+|.+.....+...+.++.+||+||+..++..+..+++++|++++|+|+
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~ 94 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDA 94 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEEC
Confidence 66799999999999999999999988776556677666666777889999999999999998999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCCCccc
Q 031797 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR 149 (153)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~~~~~ 149 (153)
++++++.....++..++......+.|+++++||+|+.+....+++++.+++....
T Consensus 95 ~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~ 149 (184)
T smart00178 95 YDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTT 149 (184)
T ss_pred CcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCccc
Confidence 9999898888888877665444678999999999998887888999999887643
No 20
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.8e-27 Score=148.56 Aligned_cols=135 Identities=20% Similarity=0.483 Sum_probs=115.6
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeEEEEE----EEcCEEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETV----EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~~~~~----~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
...+|++++|++.+|||||+.++....|... ..|.|+....- ..+..++++||+.|+++|+...-.++++++++|
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi 98 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence 4467999999999999999999999988644 56777765322 225689999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc-----CCHHHHHHHhCCCcccC
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLRQ 150 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~-----~~~~~~~~~~~~~~~~~ 150 (153)
++||+++.+||..++.|...+ ....+.+.|||+++||||+.++ +....+++++|+++++.
T Consensus 99 LmyDitNeeSf~svqdw~tqI-ktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEt 163 (193)
T KOG0093|consen 99 LMYDITNEESFNSVQDWITQI-KTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFET 163 (193)
T ss_pred EEEecCCHHHHHHHHHHHHHh-eeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhh
Confidence 999999999998888877766 5568889999999999999865 46789999999988754
No 21
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.95 E-value=1.5e-26 Score=154.02 Aligned_cols=130 Identities=37% Similarity=0.640 Sum_probs=113.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcc
Q 031797 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 98 (153)
+|+++|++|+|||||++++.+.......+|.+.....+...+.++.+||+||+..++..+..+++++|++++|+|+++..
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~ 80 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD 80 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh
Confidence 48999999999999999998773335577888777777888999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCCCcc
Q 031797 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 148 (153)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~~~~ 148 (153)
++.....++..+.......+.|+++|+||.|+.+.....++.+.+++..+
T Consensus 81 s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~ 130 (167)
T cd04161 81 RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKL 130 (167)
T ss_pred HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccc
Confidence 99999888888876544467999999999999988888888888877765
No 22
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.95 E-value=1.6e-26 Score=157.76 Aligned_cols=134 Identities=22% Similarity=0.373 Sum_probs=108.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEE--EEEE-------cCEEEEEEEcCCCCCchhchHhhhcCCCE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY-------KNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~-------~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (153)
+||+++|++++|||||++++.++.+.. +.+|.+.... .+.. ....+.+||++|++.|...+..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999988764 4567764332 2322 34689999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCC------------------CCCCceEEEEEeCCCccccC---------CHHHHH
Q 031797 88 LIFVVDSNDRDRVVEARDELHRMLNED------------------ELRDAVLLVFANKQDLPNAM---------NAAEIT 140 (153)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~------------------~~~~~~iivv~~K~Dl~~~~---------~~~~~~ 140 (153)
+++|||+++++|++++..|+..+.... ...++|+++||||.|+.++. ....++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999988877775421 22579999999999996542 355778
Q ss_pred HHhCCCcccCC
Q 031797 141 DKLGLHSLRQR 151 (153)
Q Consensus 141 ~~~~~~~~~~~ 151 (153)
++++++.+...
T Consensus 161 ~~~~~~~i~~~ 171 (202)
T cd04102 161 EQGNAEEINLN 171 (202)
T ss_pred HhcCCceEEEe
Confidence 88999877543
No 23
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=6.2e-27 Score=157.41 Aligned_cols=131 Identities=19% Similarity=0.284 Sum_probs=103.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEE-EEE--EcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEE
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~--~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 92 (153)
.+||+++|++|+|||||+++|.++.+.. +.+|.+..+. .+. ....++.+||++|++.|......+++++|++++||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 3689999999999999999999988764 4666655442 223 34578999999999999989899999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc-----------------cCCHHHHHHHhCC-Ccc
Q 031797 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN-----------------AMNAAEITDKLGL-HSL 148 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~-----------------~~~~~~~~~~~~~-~~~ 148 (153)
|+++++||..+...|...+.... ++.|+++||||+|+.+ .++..++++++++ +++
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~ 153 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYL 153 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEE
Confidence 99999999997544444444433 6799999999999853 1247778888886 444
No 24
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.95 E-value=2.2e-26 Score=159.09 Aligned_cols=114 Identities=20% Similarity=0.392 Sum_probs=100.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCc
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~ 97 (153)
+||+++|.+|+|||||+++|.++++....+|.+............+.+||++|++.|...+..+++.+|++++|||++++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~ 80 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNV 80 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999999987777788776665566778899999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
++|..+..||..+... ..+++|+++|+||+|+.+
T Consensus 81 ~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 81 QSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred HHHHHHHHHHHHHHHh-cCCCCcEEEEEECccccc
Confidence 9999999988887653 336799999999999965
No 25
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.95 E-value=7.6e-27 Score=157.39 Aligned_cols=133 Identities=17% Similarity=0.299 Sum_probs=105.9
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEE-EEEE--cCEEEEEEEcCCCCCchhchHhhhcCCCEEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 90 (153)
...+||+++|++|+|||||+++|..+.+.. +.||.+..+. .+.. ...++.+||++|++.|...+..+++++|++++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 346899999999999999999999988864 4667765443 2222 45789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc-----------------CCHHHHHHHhCC-Ccc
Q 031797 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----------------MNAAEITDKLGL-HSL 148 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~-----------------~~~~~~~~~~~~-~~~ 148 (153)
|||++++.||.++...|...+.... ++.|+++|+||+|+.+. ++.+++++++++ +++
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~ 157 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYI 157 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEE
Confidence 9999999999998544444444433 67999999999998641 247788888885 554
No 26
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.95 E-value=4.1e-26 Score=150.54 Aligned_cols=129 Identities=68% Similarity=1.153 Sum_probs=107.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcc
Q 031797 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 98 (153)
||+++|++++|||||++++....+....+|.+.....++..+..+.+||+||+..+...+..+++.++++++|+|++++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 80 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD 80 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence 68999999999999999998877766677777776677778899999999999999999999999999999999999988
Q ss_pred cHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCCCc
Q 031797 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS 147 (153)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~~~ 147 (153)
++.....++...+......+.|+++++||+|+.+.....++.+.++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~ 129 (158)
T cd04151 81 RLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSE 129 (158)
T ss_pred HHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccc
Confidence 8877777777766554445799999999999987665666766665443
No 27
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.95 E-value=1.8e-26 Score=156.79 Aligned_cols=117 Identities=23% Similarity=0.357 Sum_probs=96.5
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCcc-ccCCceeeEEE---EEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEE
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~~-~~~~t~~~~~~---~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 91 (153)
..+|++++|++|+|||||+.+|..+.+. .+.+|.+..+. .++.....+.+||++|++.|+..+..+++++|++++|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 3589999999999999999999998885 45677765443 2233457899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
||+++++||+.+...|...+.... +++|+++|+||.|+.+.
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~ 122 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRND 122 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcC
Confidence 999999999999765555444332 57999999999999653
No 28
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.94 E-value=5.7e-27 Score=149.82 Aligned_cols=135 Identities=24% Similarity=0.425 Sum_probs=113.7
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccccCC-ceeeEEE----EEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVE----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~-t~~~~~~----~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
...+||+++|++|+|||||+.+|..+.|.+..+ |++..+. .+..+..++.+||+.|+++|+.+.+++++++.++|
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI 88 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII 88 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence 446999999999999999999999999887655 4776543 44557799999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc-----cCCHHHHHHHhCCCccc
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN-----AMNAAEITDKLGLHSLR 149 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~-----~~~~~~~~~~~~~~~~~ 149 (153)
+|||++..++|.++..|+.++-.....+++..++|+||+|..+ .++...++++.++.+++
T Consensus 89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE 153 (209)
T KOG0080|consen 89 LVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIE 153 (209)
T ss_pred EEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEE
Confidence 9999999999999977777776555667888899999999873 24577788887776553
No 29
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.94 E-value=8.7e-26 Score=148.84 Aligned_cols=128 Identities=74% Similarity=1.261 Sum_probs=113.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcc
Q 031797 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 98 (153)
||+++|.+|+|||||++++.+.......++.+.....+...+..+.+||+||+..+...+..+++.+|++++|+|+++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~ 80 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE 80 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence 68999999999999999999988666777888888888888999999999999999989999999999999999999999
Q ss_pred cHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCCC
Q 031797 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 146 (153)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~~ 146 (153)
++.....++..+.......+.|+++++||+|+......+++.+.++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~ 128 (158)
T cd00878 81 RIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLE 128 (158)
T ss_pred HHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChh
Confidence 999988888888776555789999999999998877777777777655
No 30
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.94 E-value=1.2e-25 Score=150.17 Aligned_cols=141 Identities=51% Similarity=0.854 Sum_probs=120.1
Q ss_pred ccccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEE
Q 031797 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 92 (153)
...+.++++++|++|+|||||++++.+..+....++.+.....+...+..+.+||+||+..+...+..+++.++++++|+
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 89 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVI 89 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEE
Confidence 34558999999999999999999999887766677778777777788899999999999888888888899999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCCCcccCCCC
Q 031797 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~ 153 (153)
|+++..++.....++..........+.|+++++||+|+.+....+++.+.+++..+.++.|
T Consensus 90 D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~ 150 (173)
T cd04155 90 DSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTW 150 (173)
T ss_pred eCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeE
Confidence 9999888888887877776654446799999999999988777888999998887766543
No 31
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.94 E-value=9.3e-26 Score=149.07 Aligned_cols=129 Identities=52% Similarity=0.851 Sum_probs=106.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCc-c-ccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCC
Q 031797 19 RILMVGLDAAGKTTILYKLKLGEI-V-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 96 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~~-~-~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~ 96 (153)
+|+++|++|+|||||++++.+... . ...+|.+.....+...+.++.+||+||+..+...+..+++++|++++|+|+++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 80 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD 80 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence 589999999999999999998753 2 34677776666667788999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHcCC--CCCCceEEEEEeCCCccccCCHHHHHHHhCCCc
Q 031797 97 RDRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS 147 (153)
Q Consensus 97 ~~s~~~~~~~~~~~~~~~--~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~~~ 147 (153)
..++.....++..+.... ...+.|+++++||+|+.+.....++.+.+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~ 133 (162)
T cd04157 81 RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLEN 133 (162)
T ss_pred HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCcc
Confidence 988887777777665532 225799999999999987766667776666543
No 32
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.94 E-value=8.3e-26 Score=154.48 Aligned_cols=115 Identities=22% Similarity=0.498 Sum_probs=95.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEE--EEEEEc--CEEEEEEEcCCCCCchhchHhhhcCCCEEEEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 92 (153)
..|+++|.+|||||||+++|..+.+.. +.+|.+..+ ..+..+ ...+.+||++|++.|...+..+++++|++++||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 368999999999999999999988865 356665543 344444 478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
|+++++||+.+..|+.. +......+.|+++|+||+|+.+.
T Consensus 81 Dvtd~~Sf~~l~~w~~~-i~~~~~~~~piilVgNK~DL~~~ 120 (202)
T cd04120 81 DITKKETFDDLPKWMKM-IDKYASEDAELLLVGNKLDCETD 120 (202)
T ss_pred ECcCHHHHHHHHHHHHH-HHHhCCCCCcEEEEEECcccccc
Confidence 99999999999876654 44444467999999999999643
No 33
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.94 E-value=6.5e-26 Score=153.64 Aligned_cols=132 Identities=20% Similarity=0.347 Sum_probs=105.7
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeEE--EEEEEc--CEEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~~--~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
...+||+++|..|+|||||+.+|..+.+... .++.+..+ ..+... ...+.+||++|++.|...+..+++++|+++
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 3569999999999999999999998877543 44555443 334443 478999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc-----CCHHHHHHHhCCCcc
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~-----~~~~~~~~~~~~~~~ 148 (153)
+|||++++.+|.++..|+..+... .++.|+++||||+|+.+. ++.++++++.+.+++
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~--~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~ 145 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEH--APGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFF 145 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEE
Confidence 999999999999998777776443 268999999999999753 345677777776655
No 34
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.94 E-value=2.3e-26 Score=159.05 Aligned_cols=130 Identities=16% Similarity=0.271 Sum_probs=105.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEE-EEE--EcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~--~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 93 (153)
+||+++|++|+|||||+++|..+.+.. +.||.+..+. .+. .....+.+||++|++.|...+..+++++|++++|||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd 81 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD 81 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence 799999999999999999999988774 5677665543 233 345789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc-----------------CCHHHHHHHhCC-Ccc
Q 031797 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----------------MNAAEITDKLGL-HSL 148 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~-----------------~~~~~~~~~~~~-~~~ 148 (153)
++++++|..+..+|...+.... ++.|+++|+||+|+.++ ++...++++++. +++
T Consensus 82 is~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~ 153 (222)
T cd04173 82 ISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYV 153 (222)
T ss_pred CCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEE
Confidence 9999999999877776655433 68999999999999642 235667777775 444
No 35
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.4e-26 Score=152.97 Aligned_cols=135 Identities=24% Similarity=0.451 Sum_probs=116.9
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcc-ccCCceeeEEEE----EEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~-~~~~t~~~~~~~----~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
.+-+|++++|++++|||-|+.||..+.|. +..+|++++..+ +..+..+.+|||+.|+++|++...++++++.+.+
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl 91 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 91 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence 44589999999999999999999999887 557789888765 3346689999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc-----CCHHHHHHHhCCCcccC
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLRQ 150 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~-----~~~~~~~~~~~~~~~~~ 150 (153)
+|||++...+|+++..|+.++.. +..+++++++||||+||.+. ++...++++.++.+++.
T Consensus 92 lVYDITr~~Tfenv~rWL~ELRd-had~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~Et 156 (222)
T KOG0087|consen 92 LVYDITRRQTFENVERWLKELRD-HADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLET 156 (222)
T ss_pred EEEechhHHHHHHHHHHHHHHHh-cCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEe
Confidence 99999999999988888877754 45589999999999999862 56889999988887754
No 36
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.94 E-value=8e-26 Score=151.65 Aligned_cols=116 Identities=17% Similarity=0.260 Sum_probs=95.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCcc-ccCCceeeEEE-EEEEcC--EEEEEEEcCCCCCchhchHhhhcCCCEEEEEE
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 92 (153)
.+|++++|++|+|||||+++|.++.+. .+.||.+..+. .+...+ .++.+||++|++.+...+..+++++|++++||
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 378999999999999999999998885 45677765443 333444 78899999999999988888999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
|+++++++.++..+|...+.... ++.|+++|+||+|+.+.
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~ 120 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 120 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhC
Confidence 99999999998765555554432 57999999999998653
No 37
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.94 E-value=4e-26 Score=153.09 Aligned_cols=127 Identities=19% Similarity=0.309 Sum_probs=101.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEE-EEE--EcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~--~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 93 (153)
+|++++|++|+|||||+.+|..+.+.. +.+|.+..+. .+. ....++.+||++|+++|......++++++++++|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 689999999999999999999998874 5677765432 222 244789999999999999999999999999999999
Q ss_pred CCCcccHHHHH-HHHHHHHcCCCCCCceEEEEEeCCCcccc---------------CCHHHHHHHhCCC
Q 031797 94 SNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNA---------------MNAAEITDKLGLH 146 (153)
Q Consensus 94 ~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~~K~Dl~~~---------------~~~~~~~~~~~~~ 146 (153)
+++++||+++. .|+..+ .... +++|+++||||+|+.++ ++...++++.+..
T Consensus 82 ~~~~~Sf~~~~~~w~~~i-~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~ 148 (176)
T cd04133 82 LISRASYENVLKKWVPEL-RHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAA 148 (176)
T ss_pred cCCHHHHHHHHHHHHHHH-HHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCC
Confidence 99999999985 455544 3332 57999999999999542 2356777777764
No 38
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.94 E-value=3.8e-26 Score=158.81 Aligned_cols=133 Identities=18% Similarity=0.288 Sum_probs=105.4
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEE-EEE--EcCEEEEEEEcCCCCCchhchHhhhcCCCEEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~--~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 90 (153)
...+||+++|++|||||||+++|.++.+.. +.||.+..+. .+. .....+.+||++|++.|......+++++|++++
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl 90 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 90 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence 456899999999999999999999988774 4667665543 222 245789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc-----------------CCHHHHHHHhCCC-cc
Q 031797 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----------------MNAAEITDKLGLH-SL 148 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~-----------------~~~~~~~~~~~~~-~~ 148 (153)
|||+++++||......|...+.... ++.|+++|+||+|+.+. ++++++++++++. ++
T Consensus 91 VyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~ 165 (232)
T cd04174 91 CFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYL 165 (232)
T ss_pred EEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEE
Confidence 9999999999986444444444332 57899999999998631 2578888888884 54
No 39
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.94 E-value=6.4e-26 Score=151.73 Aligned_cols=132 Identities=19% Similarity=0.288 Sum_probs=104.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEE-EEEEc--CEEEEEEEcCCCCCchhchHhhhcCCCEEEEEE
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 92 (153)
.+|++++|.+|+|||||++++..+.+.. ..+|.+..+. .+... ...+.+||+||++.+...+..+++.+|++++||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 5799999999999999999999988864 4566654332 33333 367999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc-----CCHHHHHHHhCCCcc
Q 031797 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSL 148 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~-----~~~~~~~~~~~~~~~ 148 (153)
|++++.|+.....|+..+......+++|+++|+||+|+.+. .+..+++++.+.+++
T Consensus 82 d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~ 142 (172)
T cd04141 82 SVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFF 142 (172)
T ss_pred ECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEE
Confidence 99999999998876544433223367999999999998653 245566667777655
No 40
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.94 E-value=1.2e-25 Score=149.02 Aligned_cols=132 Identities=20% Similarity=0.374 Sum_probs=104.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEE-EEEEEc--CEEEEEEEcCCCCCchhchHhhhcCCCEEEEEE
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 92 (153)
.+||+++|++|+|||||++++.++.+.. ..+|.+... ..+... ...+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 3799999999999999999999887654 345554332 233333 567889999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
|+++..++.....|+..+.......+.|+++++||+|+.+.. ...+++++++.+++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 141 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFL 141 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEE
Confidence 999999999998888888765445789999999999997532 24566677776554
No 41
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.94 E-value=1.5e-25 Score=148.17 Aligned_cols=131 Identities=18% Similarity=0.349 Sum_probs=101.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeE-EEEEEEc--CEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN-VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~-~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 93 (153)
+||+++|++|+|||||++++..+.+... .+|.+.. ...+... ...+.+||+||+++|...+..++++++++++|||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYS 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEE
Confidence 7999999999999999999998877543 4554422 2233333 4678899999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
++++.++.....|+..+.......+.|+++++||+|+.+.. ....+++.++.+.+
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 141 (163)
T cd04136 82 ITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFY 141 (163)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEE
Confidence 99999999888887777654444679999999999996532 23445565555443
No 42
>PTZ00369 Ras-like protein; Provisional
Probab=99.94 E-value=1.9e-25 Score=151.48 Aligned_cols=134 Identities=19% Similarity=0.341 Sum_probs=105.5
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcc-ccCCceeeEEE-E--EEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~-~~~~t~~~~~~-~--~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 90 (153)
...+||+++|++|+|||||++++.++.+. ...+|.+..+. . ++.....+.+||+||++.+...+..++++++++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 45689999999999999999999998875 34555554432 2 23344678899999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
|||+++++++.....|+..+.+.....+.|+++++||+|+.+.. +..++++..+.+.+
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~ 145 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFL 145 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEE
Confidence 99999999999998877777655444689999999999986432 24556666666544
No 43
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.94 E-value=2.4e-25 Score=149.65 Aligned_cols=133 Identities=23% Similarity=0.508 Sum_probs=106.1
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeEEE--EEEE------------cCEEEEEEEcCCCCCchhchHh
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVEY------------KNISFTVWDVGGQDKIRPLWRH 80 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~~~--~~~~------------~~~~~~i~d~~g~~~~~~~~~~ 80 (153)
+.+|++++|++|+|||||++++.+..+... .+|.+.... .+.. ....+.+||+||++.+...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 458999999999999999999999887643 556654432 2222 2378999999999999999999
Q ss_pred hhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc-----CCHHHHHHHhCCCcc
Q 031797 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSL 148 (153)
Q Consensus 81 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~-----~~~~~~~~~~~~~~~ 148 (153)
+++++|++++|||+++++++..+..|+..+......++.|+++|+||+|+.+. ....+++++++++.+
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 155 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYF 155 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEE
Confidence 99999999999999999999999887776654444467899999999999653 236677777777654
No 44
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.94 E-value=2.6e-25 Score=147.83 Aligned_cols=131 Identities=24% Similarity=0.428 Sum_probs=102.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeEEE--EEEE--cCEEEEEEEcCCCCCchhchHhhhcCCCEEEEE
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 91 (153)
.+|++++|++|+|||||++++.++.+... .+|.+.... .+.. ...++.+||+||++.+...+..++++++++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 47999999999999999999999887654 445555443 2333 346889999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
||++++.++..+..|+..... ...++.|+++|+||+|+.++. ...+++++.+++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~-~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 142 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARN-LTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFL 142 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHH-hCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEE
Confidence 999999999998888776643 233678999999999996542 34555655555443
No 45
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.94 E-value=4.4e-25 Score=145.69 Aligned_cols=129 Identities=51% Similarity=0.951 Sum_probs=106.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEE-cCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCc
Q 031797 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~ 97 (153)
+|+++|++|+|||||++++.+..+....+|.+.....+.. ....+.+||+||+..+...+..+++.+|++++|+|++++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~ 80 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE 80 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH
Confidence 5899999999999999999998877667777766555554 357899999999999988888899999999999999998
Q ss_pred ccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCCCc
Q 031797 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS 147 (153)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~~~ 147 (153)
.++.....++...+......+.|+++++||+|+.+.....++...+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~ 130 (160)
T cd04156 81 ARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKK 130 (160)
T ss_pred HHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcc
Confidence 88888888888877654446799999999999976655666766655443
No 46
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.93 E-value=6.9e-25 Score=148.71 Aligned_cols=133 Identities=39% Similarity=0.738 Sum_probs=113.8
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEE
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 93 (153)
..+..+++++|++|+|||||++++.+..+....+|.+.....+...+..+.+||+||+..+...+..++++++++++|+|
T Consensus 16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D 95 (190)
T cd00879 16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVD 95 (190)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEE
Confidence 35689999999999999999999998877666677777777777888999999999999888888889999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCCC
Q 031797 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 146 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~~ 146 (153)
+++..++.....++...+......+.|+++++||+|+.+....+++.+.++..
T Consensus 96 ~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~ 148 (190)
T cd00879 96 AADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLY 148 (190)
T ss_pred CCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcc
Confidence 99998898888888888765555679999999999998776777777777653
No 47
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.93 E-value=6.7e-25 Score=148.14 Aligned_cols=128 Identities=52% Similarity=0.916 Sum_probs=102.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEE-----cCEEEEEEEcCCCCCchhchHhhhcCCCEEEEE
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~-----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 91 (153)
.++|+++|++|+|||||++++....+....+|.+........ ....+.+||+||++.+...+..+++++|++++|
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 82 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFV 82 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEE
Confidence 589999999999999999999988777666776655443332 457899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhC
Q 031797 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG 144 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~ 144 (153)
+|+++..++.....++..+.......+.|+++++||+|+.+.....++.+.++
T Consensus 83 ~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~ 135 (183)
T cd04152 83 VDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLA 135 (183)
T ss_pred EECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhC
Confidence 99999888888777776665543345799999999999976555555554443
No 48
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.93 E-value=6.2e-25 Score=152.16 Aligned_cols=136 Identities=24% Similarity=0.353 Sum_probs=106.1
Q ss_pred hcccccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEEEEEE----cCEEEEEEEcCCCCCchhchHhhhcCC
Q 031797 11 KLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNT 85 (153)
Q Consensus 11 ~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~ 85 (153)
.......+||+++|.+|+|||||++++..+.+.. ..+|.+........ ....+.+||++|++.|...+..+++.+
T Consensus 7 ~~~~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 86 (219)
T PLN03071 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (219)
T ss_pred CCcCCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccc
Confidence 3444678999999999999999999998888764 46777765544332 347999999999999999999999999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCC---HHHHHHHhCCCcc
Q 031797 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSL 148 (153)
Q Consensus 86 ~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~---~~~~~~~~~~~~~ 148 (153)
+++++|||++++.++..+..|+..+... . ++.|+++|+||+|+.+... ...+++..+++++
T Consensus 87 ~~~ilvfD~~~~~s~~~i~~w~~~i~~~-~-~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~ 150 (219)
T PLN03071 87 QCAIIMFDVTARLTYKNVPTWHRDLCRV-C-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYY 150 (219)
T ss_pred cEEEEEEeCCCHHHHHHHHHHHHHHHHh-C-CCCcEEEEEEchhhhhccCCHHHHHHHHhcCCEEE
Confidence 9999999999999999988877666443 2 5799999999999965322 1244444555444
No 49
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.93 E-value=5.1e-25 Score=146.07 Aligned_cols=131 Identities=24% Similarity=0.454 Sum_probs=101.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEE--EEEE--cCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 92 (153)
+||+++|++|+|||||++++.+.++.. +.++.+..+. .+.. ....+.+||+||++.+...+..++++++++++|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999988764 4566665543 3333 4578999999999999988999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCC----CCCceEEEEEeCCCcccc-----CCHHHHHHHhCCCcc
Q 031797 93 DSNDRDRVVEARDELHRMLNEDE----LRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSL 148 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~----~~~~~iivv~~K~Dl~~~-----~~~~~~~~~~~~~~~ 148 (153)
|++++.++.....|+..+..... ..+.|+++|+||+|+.+. .....++++.+.+.+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 145 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYF 145 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEE
Confidence 99999999888877776654332 257999999999999732 223345555555443
No 50
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.93 E-value=6e-25 Score=150.40 Aligned_cols=127 Identities=23% Similarity=0.380 Sum_probs=100.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEE--EEEE---cCEEEEEEEcCCCCCchhchHhhhcCCCEEEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 91 (153)
+||+++|++|+|||||+++|.++.+.. ..+|.+..+. .+.. ....+.+||+||++.+...+..++++++++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999987764 4677765442 3333 357899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCC---CCCCceEEEEEeCCCccc--c---CCHHHHHHHhC
Q 031797 92 VDSNDRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPN--A---MNAAEITDKLG 144 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~iivv~~K~Dl~~--~---~~~~~~~~~~~ 144 (153)
||+++++++..+..|+..+.... ...++|+++|+||+|+.+ . .+..++++..+
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~ 141 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENG 141 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcC
Confidence 99999999999887766553321 236789999999999963 2 23556666665
No 51
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.93 E-value=8.1e-25 Score=146.14 Aligned_cols=130 Identities=23% Similarity=0.424 Sum_probs=101.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEE--EEEE--cCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEE
Q 031797 19 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 93 (153)
||+++|.+|+|||||++++.++.+.. +.+|.+..+. .+.. ....+.+||+||++.|...+..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999988864 4677765543 2333 34689999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCC-------HHHHHHHhCCCcc
Q 031797 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-------AAEITDKLGLHSL 148 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~-------~~~~~~~~~~~~~ 148 (153)
+++++++.....|+..+.......+.|+++|+||+|+.+... ...++++++.+++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYW 143 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEE
Confidence 999999999888777765544334578999999999964321 2245555555433
No 52
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.93 E-value=5.4e-25 Score=145.66 Aligned_cols=132 Identities=20% Similarity=0.356 Sum_probs=102.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeEEE-EEEE--cCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEE
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 92 (153)
.+||+++|++|+|||||++++.+..+... .++.+..+. .... ....+.+||+||++++...+..+++.+|++++|+
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 47999999999999999999998876533 444443222 2233 3367899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
|+++..++.....|+..+.+.....+.|+++++||+|+.++. ...++++..+.+.+
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 142 (164)
T cd04145 82 SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYI 142 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEE
Confidence 999999999988888777655444679999999999997542 34455555566544
No 53
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.93 E-value=9e-25 Score=144.67 Aligned_cols=132 Identities=17% Similarity=0.366 Sum_probs=102.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCcccc-CCcee-eEEEEEEEc--CEEEEEEEcCCCCCchhchHhhhcCCCEEEEEE
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-FNVETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~-~~~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 92 (153)
.+|++++|++|+|||||++++..+.+... .+|.+ .....+... ...+.+||+||+++|...+..+++++|++++|+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 47999999999999999999999887644 44443 122233333 357889999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
|++++.++.+...|+..+.......+.|+++++||+|+.+.. ....+++.++.+++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 141 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFM 141 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEE
Confidence 999999999988887777654444689999999999986432 24555555665544
No 54
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.93 E-value=6.4e-25 Score=145.82 Aligned_cols=130 Identities=22% Similarity=0.503 Sum_probs=102.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEE--EEEE--cCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 92 (153)
+|++++|++|+|||||++++.+.++.. ..+|.+..+. .+.. ....+.+||+||++.+...+..++++++++++|+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 699999999999999999999988764 4566665432 2333 3468999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
|+++++++..+..|+..+ ......+.|+++|+||+|+.+.. ...++++.++++.+
T Consensus 82 d~~~~~s~~~~~~~~~~i-~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 141 (165)
T cd01865 82 DITNEESFNAVQDWSTQI-KTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFF 141 (165)
T ss_pred ECCCHHHHHHHHHHHHHH-HHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEE
Confidence 999999999888877665 33333578999999999996542 34456666666544
No 55
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.93 E-value=1.1e-24 Score=145.37 Aligned_cols=132 Identities=24% Similarity=0.446 Sum_probs=103.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEE--EEEEc--CEEEEEEEcCCCCCch-hchHhhhcCCCEEEE
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIR-PLWRHYFQNTQGLIF 90 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~d~~g~~~~~-~~~~~~~~~~~~ii~ 90 (153)
.+||+++|++|+|||||++++....+.. ..++.+.... .+... ...+.+||++|++.+. ..+..+++.+|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5899999999999999999999887763 4556554432 33333 4789999999998886 467888899999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
|||++++.++.....|...+.......++|+++|+||+|+.+.. ...++++..+++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 144 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLF 144 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEE
Confidence 99999999999988877766555444689999999999986543 34566666666554
No 56
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.93 E-value=9.4e-25 Score=144.65 Aligned_cols=131 Identities=21% Similarity=0.388 Sum_probs=101.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeEE-EEEEE--cCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~~-~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 93 (153)
+||+++|++|+|||||++++.+..+... .++.+..+ ..+.. ....+.+||+||++++...+..+++.++++++|||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 5899999999999999999998877543 33333221 22222 34688999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+++++++.....|+..+.......+.|+++++||+|+.+.. ....+++..+.+++
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 140 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFL 140 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEE
Confidence 99999999888877776655444578999999999997532 24455666665544
No 57
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.93 E-value=4.9e-25 Score=147.70 Aligned_cols=115 Identities=20% Similarity=0.306 Sum_probs=92.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEE-EEEE--cCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEE
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 92 (153)
.+|++++|++|+|||||+.++..+.+.. +.+|.+..+. .+.. ...++.+||++|++.+...+..+++++|++++||
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 3689999999999999999999888764 4555543321 2223 4478999999999999999899999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
|++++++|.+....|...+... .++.|+++|+||+|+.+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~ 119 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRD 119 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEeeChhhcc
Confidence 9999999999876555544433 25799999999999964
No 58
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.93 E-value=3e-24 Score=140.83 Aligned_cols=128 Identities=39% Similarity=0.773 Sum_probs=107.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCcc-ccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcc
Q 031797 20 ILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (153)
Q Consensus 20 i~i~G~~~~GKtsli~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 98 (153)
|+++|++|+|||||++++.+.++. ...+|.+.....+......+.+||+||+..+...+..+++.+|++++|+|+++..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 81 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT 81 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH
Confidence 789999999999999999998776 3467777777777777799999999999999999999999999999999999988
Q ss_pred cHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCCCc
Q 031797 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS 147 (153)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~~~ 147 (153)
++.....++..+.......+.|+++++||+|+.+.....++.+.+++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~ 130 (159)
T cd04159 82 ALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKS 130 (159)
T ss_pred HHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCccc
Confidence 8888888888877655556789999999999987766666666655443
No 59
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.93 E-value=1.3e-24 Score=149.72 Aligned_cols=132 Identities=24% Similarity=0.530 Sum_probs=105.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeEEE--EEEE---cCEEEEEEEcCCCCCchhchHhhhcCCCEEEE
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~~~--~~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 90 (153)
.+||+++|++|+|||||++++.+..+... .+|.+.... .+.. ....+.+||++|++.+......+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 58999999999999999999999887643 566665543 2333 24689999999999999989999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc-----CCHHHHHHHhCCCcc
Q 031797 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSL 148 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~-----~~~~~~~~~~~~~~~ 148 (153)
|||+++++++.++..|+..+.........|+++|+||.|+.+. ....++++.++++++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 144 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYI 144 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEE
Confidence 9999999999999988887765544356889999999999753 235667777776554
No 60
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.93 E-value=1.1e-24 Score=145.03 Aligned_cols=132 Identities=23% Similarity=0.503 Sum_probs=103.4
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeEEE--EEEEc--CEEEEEEEcCCCCCchhchHhhhcCCCEEEE
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~~~--~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 90 (153)
..+||+++|++|+|||||++++.+.++... .+|.+.... .+... ...+.+||+||++.+......+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 358999999999999999999999887643 566665432 33333 3689999999999998888899999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
|||+++.+++..+..|+..+.. ....+.|+++++||+|+.+.. +...+++..+++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 143 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEE-HASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFL 143 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHH-hCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEE
Confidence 9999999999988876666543 334679999999999997532 24456666666544
No 61
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.93 E-value=2.4e-24 Score=142.65 Aligned_cols=130 Identities=21% Similarity=0.437 Sum_probs=103.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEE--EEEEcC--EEEEEEEcCCCCCchhchHhhhcCCCEEEEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 92 (153)
++|+++|++|+|||||++++.++.+.. +.+|.+.... .+...+ ..+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 589999999999999999999988764 4667765543 344443 67899999999999988899999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc-----CCHHHHHHHhCCCcc
Q 031797 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSL 148 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~-----~~~~~~~~~~~~~~~ 148 (153)
|+++++++..+..|+..+... ...+.|+++|+||.|+..+ .+...+++.++.+++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 140 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEY-APEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFF 140 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEE
Confidence 999999999998877665433 3357999999999999653 246666666666554
No 62
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.93 E-value=1.7e-24 Score=143.83 Aligned_cols=131 Identities=27% Similarity=0.514 Sum_probs=102.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEE--EEEEEc--CEEEEEEEcCCCCCchhchHhhhcCCCEEEEE
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 91 (153)
.+|++++|++|+|||||++++.++.+.. +.+|.+... ..+... ...+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 4799999999999999999999887753 345555433 333333 35789999999999999989999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
||+++++++..+..|+..+.. ...++.|+++++||.|+.+.. ....+++..+++.+
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~-~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 142 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDR-YASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFL 142 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHH-hCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEE
Confidence 999999999998887766543 233578999999999986542 34566666666544
No 63
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.93 E-value=1.3e-24 Score=147.11 Aligned_cols=127 Identities=21% Similarity=0.333 Sum_probs=98.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEE-EEEE---cCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 92 (153)
+||+++|++|+|||||++++.++.+.. +.+|.+..+. .+.. ....+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 489999999999999999999988764 3455554432 2333 2468999999999999988888999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc---------CCHHHHHHHhCC
Q 031797 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA---------MNAAEITDKLGL 145 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~---------~~~~~~~~~~~~ 145 (153)
|++++.+++.....|...+... .++.|+++|+||.|+... .+..++++..+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~ 141 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHF-CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGA 141 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCC
Confidence 9999999998876555444432 257999999999999653 234556666666
No 64
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.93 E-value=2e-25 Score=140.76 Aligned_cols=139 Identities=37% Similarity=0.748 Sum_probs=130.1
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEE
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 92 (153)
-.....+.++|-.++|||||++.+..+++.+. .||.|.....++-....+.+||.||+.+|+..|..+.+++++++||+
T Consensus 17 ~k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~V 96 (186)
T KOG0075|consen 17 WKEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVV 96 (186)
T ss_pred HHheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEe
Confidence 35578999999999999999999888777654 88999999999999999999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCCCcccCCC
Q 031797 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH 152 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~ 152 (153)
|+++++.+......+..++.+..+.++|++++|||.|+.++-....+.+++|+.++.+|+
T Consensus 97 Daad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdRE 156 (186)
T KOG0075|consen 97 DAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDRE 156 (186)
T ss_pred ecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccce
Confidence 999999999999999999999999999999999999999999999999999999998874
No 65
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.93 E-value=2.2e-24 Score=149.10 Aligned_cols=131 Identities=21% Similarity=0.347 Sum_probs=102.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEE--EEEE---cCEEEEEEEcCCCCCchhchHhhhcCCCEEEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 91 (153)
+||+++|++|+|||||+++|.+..+.. +.+|.+.... .+.. ....+.+||++|++.+...+..+++++|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 589999999999999999999888764 4667775543 3333 247899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCC--CCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 92 VDSNDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
||+++++++..+..|+..+..... ..+.|+++|+||+|+.+.. ....+++..+++.+
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~ 144 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESC 144 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEE
Confidence 999999999988876666544321 2457899999999997432 34566676665543
No 66
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.93 E-value=2e-24 Score=142.49 Aligned_cols=131 Identities=18% Similarity=0.344 Sum_probs=101.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEE-EEEEEc--CEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 93 (153)
+||+++|++|+|||||++++.++.+.. ..+|.+..+ ..+... ...+.+||++|++.+...+..++++++++++|+|
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~ 81 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 81 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999999988754 345544332 223333 3568899999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC----CHHHHHHHhCCCcc
Q 031797 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSL 148 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~----~~~~~~~~~~~~~~ 148 (153)
+++..++.....|+..+.+.....+.|+++|+||+|+.+.. ...++++.++.+.+
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 140 (162)
T cd04138 82 INSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYI 140 (162)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEE
Confidence 99999998888877777654444679999999999997532 24455555665543
No 67
>PLN00023 GTP-binding protein; Provisional
Probab=99.93 E-value=3.9e-24 Score=153.32 Aligned_cols=137 Identities=22% Similarity=0.372 Sum_probs=108.0
Q ss_pred hcccccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEE--EEEEE---------------cCEEEEEEEcCCCC
Q 031797 11 KLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY---------------KNISFTVWDVGGQD 72 (153)
Q Consensus 11 ~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~---------------~~~~~~i~d~~g~~ 72 (153)
.......+||+++|..|||||||+++|.++.+.. ..+|.+... ..+.. ....+.+||++|++
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE 94 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE 94 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence 3445677999999999999999999999988764 466776653 22332 23679999999999
Q ss_pred CchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCC-----------CCCceEEEEEeCCCcccc--------
Q 031797 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE-----------LRDAVLLVFANKQDLPNA-------- 133 (153)
Q Consensus 73 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~~iivv~~K~Dl~~~-------- 133 (153)
.|..++..++++++++|+|||+++..++.++..|+..+..... ..++|+++|+||+|+.+.
T Consensus 95 rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~ 174 (334)
T PLN00023 95 RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSG 174 (334)
T ss_pred hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccc
Confidence 9999999999999999999999999999999888777654321 135899999999999653
Q ss_pred ---CCHHHHHHHhCCCc
Q 031797 134 ---MNAAEITDKLGLHS 147 (153)
Q Consensus 134 ---~~~~~~~~~~~~~~ 147 (153)
+.+++++++.++..
T Consensus 175 ~~~e~a~~~A~~~g~l~ 191 (334)
T PLN00023 175 NLVDAARQWVEKQGLLP 191 (334)
T ss_pred ccHHHHHHHHHHcCCCc
Confidence 23567777776543
No 68
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.93 E-value=1.4e-24 Score=143.51 Aligned_cols=129 Identities=20% Similarity=0.417 Sum_probs=102.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEEE--EEE----cCEEEEEEEcCCCCCchhchHhhhcCCCEEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--VEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~--~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 90 (153)
+||+++|++|+|||||++++.++.+.. ..+|.+..+.. +.. ...++.+||+||++.+...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 489999999999999999999887763 35666655432 333 35789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
|+|+++++++.....|+..+.... .+.|+++|+||+|+..+. +..++++.++++.+
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 141 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC--GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLF 141 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEE
Confidence 999999999988877766654322 579999999999986532 34567777777655
No 69
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.92 E-value=2.9e-24 Score=142.93 Aligned_cols=115 Identities=24% Similarity=0.438 Sum_probs=94.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEEEEEE----cCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 92 (153)
+||+++|++|+|||||+++++.+.+.. ..+|.+........ ....+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 589999999999999999999877653 46677665544333 4478999999999999888888999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
|+++..++..+..|+..+.... .+.|+++|+||+|+.+..
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~ 120 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRK 120 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhccccc
Confidence 9999999998887777665443 379999999999997443
No 70
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.92 E-value=2.9e-24 Score=142.71 Aligned_cols=124 Identities=41% Similarity=0.774 Sum_probs=102.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCc-------cccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEE
Q 031797 19 RILMVGLDAAGKTTILYKLKLGEI-------VTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 91 (153)
+|+++|++|+|||||++++.+... ....+|.+.....+...+..+.+||+||+..+...+..+++.+|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 589999999999999999975422 1235677777777888899999999999999998888999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHH
Q 031797 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDK 142 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~ 142 (153)
+|+++.+++.....++..++......+.|+++++||+|+.+.....++.+.
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~ 131 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEV 131 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHH
Confidence 999988888888888888776555568999999999999876655554443
No 71
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.92 E-value=1.9e-24 Score=142.96 Aligned_cols=130 Identities=28% Similarity=0.540 Sum_probs=104.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEE--EEEE--cCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEE
Q 031797 19 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 93 (153)
||+++|++++|||||+++|.+..+.. ..+|.+.... .+.. ....+.+||++|++.+......+++++|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999988774 4566655443 3444 44689999999999999888899999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCccc
Q 031797 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSLR 149 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~~ 149 (153)
+++++|+..+..|+..+..... .+.|+++++||.|+.+.. +..+++++++.++++
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e 140 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFE 140 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEE
T ss_pred cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHHHHhCCEEEE
Confidence 9999999999966666544332 579999999999998632 367788888866653
No 72
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.92 E-value=3.3e-24 Score=142.32 Aligned_cols=130 Identities=25% Similarity=0.468 Sum_probs=101.6
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeEE--EEEEEcC--EEEEEEEcCCCCCchhchHhhhcCCCEEEE
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 90 (153)
+.+||+++|++|+|||||++++..+.+... .++.+... ..+...+ ..+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 468999999999999999999998877643 45554333 3444444 588999999999998888999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCC
Q 031797 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLH 146 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~ 146 (153)
|+|++++.++..+..|+..+... ...++|+++|+||+|+.+.. ...++++..+..
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 141 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKY-GASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGML 141 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCc
Confidence 99999999998887777666442 33679999999999997542 345666665553
No 73
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.92 E-value=1.1e-24 Score=147.99 Aligned_cols=130 Identities=21% Similarity=0.323 Sum_probs=99.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEE-EEEEEc--CEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEEC
Q 031797 19 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~ 94 (153)
||+++|.+|+|||||+++|.++.+.. ..+|.+..+ ...... ...+.+||+||+++|...+..+++++|++++|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 58999999999999999999888764 345554332 223333 35689999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCC--CCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 95 NDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~--~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
++..++..+..|+..+..... .++.|+++|+||+|+.+.. ...++++.++.+++
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 141 (190)
T cd04144 81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFI 141 (190)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEE
Confidence 999999988888776644321 3578999999999996422 24456666666544
No 74
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.92 E-value=2.7e-24 Score=145.71 Aligned_cols=130 Identities=25% Similarity=0.463 Sum_probs=101.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEE--EEEE--cCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 92 (153)
+||+++|++|+|||||+++|.++.+.. +.+|.+..+. .+.. ....+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 589999999999999999999988865 5666665432 3333 3467899999999999989999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
|+++++++..+..|+..+... ...+.|+++++||.|+.+.. ....+++..+++++
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~-~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 140 (188)
T cd04125 81 DVTDQESFENLKFWINEINRY-ARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFF 140 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEE
Confidence 999999999988876665432 23568999999999997432 34456666666544
No 75
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.92 E-value=6.6e-24 Score=141.61 Aligned_cols=129 Identities=21% Similarity=0.228 Sum_probs=102.5
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcc--ccCCceeeEE--EEEEEcC--EEEEEEEcCCCCCchhchHhhhcCCCEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~--~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~i 88 (153)
++.+|++++|.+|+|||||+++|.+..+. .+.+|.+..+ ..+...+ ..+.+||++|++.+...+..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 46799999999999999999999998875 3466666443 2334333 6789999999999988888889999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc-----CCHHHHHHHhCCC
Q 031797 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLH 146 (153)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~-----~~~~~~~~~~~~~ 146 (153)
++|+|++++.++..+..++...... .+.|+++|+||+|+.+. ...+++++.++++
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 141 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML---GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLP 141 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC---CCCeEEEEEEcccccccccccccCHHHHHHHcCCC
Confidence 9999999999998877766654222 47999999999999643 2457788887764
No 76
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.92 E-value=1.8e-24 Score=146.80 Aligned_cols=116 Identities=22% Similarity=0.318 Sum_probs=93.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEE-EEEE--cCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 93 (153)
.||+++|++|+|||||+++|.++.+.. +.+|.+..+. .+.. ....+.+||++|++.+...+..+++.++++++|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 489999999999999999999988764 3566654432 2222 34789999999999998888889999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
+++++++......|...+.... ++.|+++|+||+|+.+..
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~ 120 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREAR 120 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCh
Confidence 9999999888754444444332 579999999999997643
No 77
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.92 E-value=3.7e-24 Score=146.29 Aligned_cols=131 Identities=24% Similarity=0.512 Sum_probs=102.9
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEE--EEEEc--CEEEEEEEcCCCCCchhchHhhhcCCCEEEE
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 90 (153)
..++|+++|++|+|||||+++|.+..+.. +.+|.+.... .+... ...+.+||+||++.+...+..++++++++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 46899999999999999999999988763 4566665443 33333 3678999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
|+|+++++++..+..|+..+.... +..|+++|+||+|+.+.. ...++++.++.+++
T Consensus 85 v~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 145 (199)
T cd04110 85 VYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLF 145 (199)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEE
Confidence 999999999999888777654432 578999999999997542 24445556665544
No 78
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.92 E-value=8.7e-25 Score=138.10 Aligned_cols=131 Identities=23% Similarity=0.475 Sum_probs=111.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEE--EEE--EcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~--~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 92 (153)
++++|+|.+|+|||+|+.+|..+.|.. +..|+|.... ++. ....+++|||+.|+++|+.....++++.+++++||
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY 88 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 88 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence 578999999999999999999887764 4567776543 333 35589999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc-----CCHHHHHHHhCCCcccC
Q 031797 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLRQ 150 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~-----~~~~~~~~~~~~~~~~~ 150 (153)
|+++.+||.+...|+..+-+. + +.+|-++||||.|.++. .++..++.++++..++.
T Consensus 89 DVTn~ESF~Nv~rWLeei~~n-c-dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FET 149 (198)
T KOG0079|consen 89 DVTNGESFNNVKRWLEEIRNN-C-DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFET 149 (198)
T ss_pred ECcchhhhHhHHHHHHHHHhc-C-ccccceecccCCCCccceeeehHHHHHHHHhcCchheeh
Confidence 999999999999998887443 3 58999999999999754 56889999999988864
No 79
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.1e-24 Score=138.47 Aligned_cols=132 Identities=23% Similarity=0.396 Sum_probs=109.3
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeEEE--EEE--EcCEEEEEEEcCCCCCchhchHhhhcCCCEEEE
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~~~--~~~--~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 90 (153)
.-+|++++|+.|+|||+|+++|...++... ..|+++++. .++ .+..+++|||+.|+++|+.....+++++.+.++
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlL 87 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL 87 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEE
Confidence 348999999999999999999999998754 567887754 333 366899999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
|+|+++.++|.++..|+...- -...+++.|++++||.|+.++. ++.+++++-.+..+
T Consensus 88 VYD~TsrdsfnaLtnWL~DaR-~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~fl 149 (214)
T KOG0086|consen 88 VYDITSRDSFNALTNWLTDAR-TLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFL 149 (214)
T ss_pred EEeccchhhHHHHHHHHHHHH-hhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeee
Confidence 999999999999999988763 3344788899999999998764 35566666555433
No 80
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.92 E-value=3.7e-24 Score=141.60 Aligned_cols=129 Identities=23% Similarity=0.465 Sum_probs=101.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEE--EEEEE--cCEEEEEEEcCCCCCchhchHhhhcCCCEEEEE
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 91 (153)
.+|++++|++|+|||||++++.+.++.. ..++.+... ..+.. ....+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 4799999999999999999999998765 455555332 23333 447899999999999988888899999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc-----CCHHHHHHHhCCC
Q 031797 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLH 146 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~-----~~~~~~~~~~~~~ 146 (153)
+|+++++++.....|+..+.... .+..|+++++||+|+.+. .....+.+..+++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 139 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNA-SPNIIIALVGNKADLESKRQVSTEEAQEYADENGLL 139 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCE
Confidence 99999999988887777765543 368999999999998732 2344455555543
No 81
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.92 E-value=5.4e-24 Score=141.80 Aligned_cols=132 Identities=20% Similarity=0.385 Sum_probs=101.7
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeEE--EEEEEc--CEEEEEEEcCCCCCchhchHhhhcCCCEEEE
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~~--~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 90 (153)
..+|++++|++|+|||||++++.+..+... .++.+... ..+... ...+.+||+||++++......+++.+|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 358999999999999999999998876543 44555443 223333 4689999999999998888899999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
|+|++++.++..+..|+..+... ..++.|+++|+||.|+.+.. ....++++.+++.+
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 144 (168)
T cd01866 83 VYDITRRETFNHLTSWLEDARQH-SNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFM 144 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEE
Confidence 99999999999888877766443 33689999999999997432 23445555555544
No 82
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.92 E-value=4.3e-24 Score=145.11 Aligned_cols=130 Identities=21% Similarity=0.508 Sum_probs=101.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCcc--ccCCceeeEEEE--EEE--cCEEEEEEEcCCCCCchhchHhhhcCCCEEEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~--~~~~t~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 91 (153)
+||+++|++|+|||||++++.++.+. ...+|.+..... +.. ....+.+||+||++.+...+..+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999999988875 345565544432 333 346899999999999988888899999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc-----CCHHHHHHHhCCCcc
Q 031797 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSL 148 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~-----~~~~~~~~~~~~~~~ 148 (153)
+|+++.+++.++..|+..+.. ....+.|+++++||+|+... .+...+++.++.+++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~-~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~ 141 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKE-YAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFM 141 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHH-hCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEE
Confidence 999999999888877665543 33357899999999999632 235566666666544
No 83
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.92 E-value=9e-24 Score=140.82 Aligned_cols=131 Identities=18% Similarity=0.372 Sum_probs=102.6
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEE--EEEE--cCEEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
...+||+++|++|+|||||++++.++.+.+ ..++.+.... .+.. ....+.+||+||++.+...+..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 456999999999999999999999888764 3556665432 2333 4467899999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCC---CCCCceEEEEEeCCCcccc----CCHHHHHHHhCC
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPNA----MNAAEITDKLGL 145 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~iivv~~K~Dl~~~----~~~~~~~~~~~~ 145 (153)
+|||+++++++.....|...+.... ...+.|+++++||+|+... .+..+++++.+.
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 145 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGD 145 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCC
Confidence 9999999999998887776665432 2257899999999999643 235556666653
No 84
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.92 E-value=6.5e-24 Score=143.21 Aligned_cols=112 Identities=22% Similarity=0.406 Sum_probs=92.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEE--EEEEcC--EEEEEEEcCCCCCchhchHhhhcCCCEEEEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 92 (153)
+|++++|++|+|||||+++|.++.+.. +.+|.+.... .+...+ ..+.+||++|++.|...+..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 589999999999999999999988874 5778776553 344444 68999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031797 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~ 131 (153)
|+++++++.++..|+..+... .....| ++|+||+|+.
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~-~~~~~p-ilVgnK~Dl~ 117 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGF-NKTAIP-ILVGTKYDLF 117 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHh-CCCCCE-EEEEEchhcc
Confidence 999999999988877766443 224567 5789999995
No 85
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.92 E-value=8.6e-24 Score=139.69 Aligned_cols=129 Identities=22% Similarity=0.433 Sum_probs=99.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEE--EEEE--cCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 92 (153)
+|++++|++|+|||||++++.+..+.. ..++.+.... .+.. ...++.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 589999999999999999999888653 3555554433 2333 3368899999999999888899999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCc
Q 031797 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHS 147 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~ 147 (153)
|++++.++..+..|+..... ...++.|+++++||.|+.... +...+++..+++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~-~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 139 (161)
T cd04113 81 DITNRTSFEALPTWLSDARA-LASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLF 139 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHH-hCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEE
Confidence 99999999888877765532 334789999999999996432 3455566665443
No 86
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.92 E-value=1.1e-23 Score=139.71 Aligned_cols=131 Identities=22% Similarity=0.441 Sum_probs=101.1
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCcc-ccCCceeeEEE--EEEEcC--EEEEEEEcCCCCCchhchHhhhcCCCEEEE
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 90 (153)
..+|++++|++|+|||||++++.+..+. ...++.+..+. .+...+ ..+.+||+||++.+......+++.++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 3579999999999999999999988865 34566655433 344433 579999999999999888999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCc
Q 031797 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHS 147 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~ 147 (153)
|+|++++.++.....|+..+... ...+.|+++|+||.|+.+.. +...++++.+++.
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 142 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSF 142 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEE
Confidence 99999999998888777665443 33468999999999997532 2345555444443
No 87
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.92 E-value=8.9e-24 Score=139.57 Aligned_cols=131 Identities=25% Similarity=0.463 Sum_probs=101.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEE--EEEE--cCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 92 (153)
+|++++|++|+|||||++++.+..+.. ..++.+..+. .+.. ....+.+||+||++.+......+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999887753 4555554432 2233 3468999999999999888888999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc----CCHHHHHHHhCCCcc
Q 031797 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSL 148 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~----~~~~~~~~~~~~~~~ 148 (153)
|++++.++.....|+..+.......+.|+++++||+|+... .+..+++++.+++.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 140 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFI 140 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEE
Confidence 99999999988887666655444578999999999999733 234555665565543
No 88
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.92 E-value=8.5e-24 Score=139.97 Aligned_cols=128 Identities=20% Similarity=0.348 Sum_probs=96.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeEEE--E--EEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~~~--~--~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 92 (153)
+||+++|++|+|||||++++.+..+.+. .++.+.... . +......+.+||++|++.|...+..+++.+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999998877643 344443322 2 2234568899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC--CHHHHHHHhCCCc
Q 031797 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHS 147 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~--~~~~~~~~~~~~~ 147 (153)
|++++.++.....|+..+... .++.|+++++||+|+.... ...++++..+.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~ 135 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSVTQKKFNFAEKHNLPL 135 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhHHHHHHHHHHHcCCeE
Confidence 999999998887776665432 2578999999999985432 2234444444443
No 89
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.92 E-value=6.7e-24 Score=140.91 Aligned_cols=130 Identities=15% Similarity=0.258 Sum_probs=98.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEE---EEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~---~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 93 (153)
+||+++|++|+|||||++++.++.+.. ..++.+..+. ........+.+||+||++++......+++.++++++|||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 789999999999999999999988753 3455443332 222345789999999999999888888999999999999
Q ss_pred CCCcccHHHHHHHHHHHHc--CCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCc
Q 031797 94 SNDRDRVVEARDELHRMLN--EDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHS 147 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~--~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~ 147 (153)
+++.+++.....|+..+.. ....++.|+++|+||+|+.+.. ....++...++++
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~ 142 (165)
T cd04140 82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAF 142 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcE
Confidence 9999999888877654432 2223679999999999996532 2233445555444
No 90
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.6e-24 Score=136.29 Aligned_cols=125 Identities=22% Similarity=0.390 Sum_probs=103.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCcc-ccCCceeeEEE----EEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEE
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~~~-~~~~t~~~~~~----~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 91 (153)
-+||+++|+.|+|||+|+++|..+-|+ ....|++..+. .++..+.++++||+.|+++|+....++++.+++++++
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv 86 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence 379999999999999999999998876 45778887653 3344668999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHH
Q 031797 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDK 142 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~ 142 (153)
+|++...+|.-+.+|+.++-. ....++--|+|+||.|+.+.. ..+++.+.
T Consensus 87 ydiscqpsfdclpewlreie~-yan~kvlkilvgnk~d~~drrevp~qigeefs~~ 141 (213)
T KOG0095|consen 87 YDISCQPSFDCLPEWLREIEQ-YANNKVLKILVGNKIDLADRREVPQQIGEEFSEA 141 (213)
T ss_pred EecccCcchhhhHHHHHHHHH-HhhcceEEEeeccccchhhhhhhhHHHHHHHHHh
Confidence 999999999888888877644 334667789999999998753 24455544
No 91
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.92 E-value=1.2e-23 Score=138.93 Aligned_cols=114 Identities=22% Similarity=0.477 Sum_probs=93.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEE--EEEEEcC--EEEEEEEcCCCCCchhchHhhhcCCCEEEEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 92 (153)
+||+++|++|+|||||++++.+.++.. ..++.+..+ ..+...+ ..+.+||+||+..+...+..+++.+|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 489999999999999999999887653 355555443 3344433 57999999999999988899999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
|+++++++.....|+..+..... .+.|+++++||+|+.+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~ 119 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSD 119 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccc
Confidence 99999999998888777655432 4799999999999943
No 92
>PLN03110 Rab GTPase; Provisional
Probab=99.92 E-value=1.4e-23 Score=145.16 Aligned_cols=133 Identities=23% Similarity=0.454 Sum_probs=104.6
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcc-ccCCceeeEEE--EEEEc--CEEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
...+||+++|++|+|||||+++|.+..+. ...+|.+.... .+... ...+.+||++|++++...+..+++.+++++
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i 89 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence 35689999999999999999999988876 44667766543 33333 368999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|||++++.++..+..|+..+.. ....++|+++++||+|+.+.. ....+++..+++.+
T Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~-~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~ 152 (216)
T PLN03110 90 LVYDITKRQTFDNVQRWLRELRD-HADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFL 152 (216)
T ss_pred EEEECCChHHHHHHHHHHHHHHH-hCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEE
Confidence 99999999999888877766543 333579999999999986432 34455555555544
No 93
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.92 E-value=6.2e-24 Score=133.25 Aligned_cols=139 Identities=48% Similarity=0.852 Sum_probs=129.9
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcC-EEEEEEEcCCCCCchhchHhhhcCCCEEEEEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 93 (153)
.+.++++.+|-.++|||||+..+.+.....-.||.++....+...+ .++.+||.+|+...+..|..|+.++|++|||+|
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVID 94 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVID 94 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEEe
Confidence 7789999999999999999999987776667889999999998876 899999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCCCcccCCCC
Q 031797 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~ 153 (153)
.++...|+++...+-+++.+.....+|+.+..||.|+..+...++++.++++.-+++|.|
T Consensus 95 S~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRsw 154 (185)
T KOG0074|consen 95 STDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSW 154 (185)
T ss_pred CCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceE
Confidence 999999999988888888888888999999999999999999999999999999999987
No 94
>PLN03118 Rab family protein; Provisional
Probab=99.91 E-value=1.7e-23 Score=144.29 Aligned_cols=135 Identities=24% Similarity=0.452 Sum_probs=104.5
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEE--EEEEc--CEEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
....+||+++|++|+|||||++++.+..+....++.+.... .+... ...+.+||+||++.+...+..+++.+|+++
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v 90 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII 90 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 34568999999999999999999998887666666665442 33333 368899999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCC-CCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|||+++++++..+...|...+... ...+.|+++|+||+|+.... ....++++.+++++
T Consensus 91 lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~ 155 (211)
T PLN03118 91 LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFL 155 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEE
Confidence 9999999999999888776655432 23468999999999996432 23445555555443
No 95
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.91 E-value=2.3e-23 Score=137.75 Aligned_cols=129 Identities=23% Similarity=0.512 Sum_probs=99.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeEE--EEEEEcC--EEEEEEEcCCCCCchhchHhhhcCCCEEEEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 92 (153)
+||+++|++|+|||||++++.+..+... .++.+... ..+...+ .++.+||+||++.+......+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 5899999999999999999998876533 45555443 3344443 68999999999999988999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCc
Q 031797 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHS 147 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~ 147 (153)
|++++.+++.+..|+..+... ..++.|+++++||+|+.... ...++.++.+++.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~-~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 139 (164)
T smart00175 81 DITNRESFENLKNWLKELREY-ADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPF 139 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeE
Confidence 999999998888766555433 23689999999999987532 3445556566553
No 96
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.91 E-value=1.4e-23 Score=140.42 Aligned_cols=114 Identities=18% Similarity=0.270 Sum_probs=89.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeE-EEEEEEc--CEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN-VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~-~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 93 (153)
+|++++|++|+|||||++++.++.+... .+|.... ...+... ...+.+||+||++.+...+..+++++|++++|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 5899999999999999999998877654 4443211 1233333 3688999999999999888889999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
++++.+++.....|...+... .++.|+++++||+|+..
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~ 118 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKH-NPKAPIILVGTQADLRT 118 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhhcc
Confidence 999999998865455444432 25789999999999864
No 97
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.91 E-value=1.4e-23 Score=139.78 Aligned_cols=128 Identities=17% Similarity=0.370 Sum_probs=99.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEE-EEEEE--cCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEE
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 92 (153)
.++++++|++|+|||||++++.++.+.. ..++.+..+ ..+.. ...++.+||+||++.|...+..+++.++++++|+
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 3689999999999999999999888753 345554332 22333 3468899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhC
Q 031797 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLG 144 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~ 144 (153)
|+++++++.....|...+.......+.|+++++||.|+.+.. ....+++.++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~ 137 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWG 137 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcC
Confidence 999999998888776666543334689999999999996543 2334555555
No 98
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.91 E-value=1.1e-23 Score=140.75 Aligned_cols=112 Identities=20% Similarity=0.333 Sum_probs=89.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeEEE-EEEE--cCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECC
Q 031797 20 ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (153)
Q Consensus 20 i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~ 95 (153)
|+++|++|+|||||++++.++.+... .++....+. .+.. ....+.+||+||++.+...+..+++++|++++|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 58999999999999999999887643 444443332 2333 3357999999999999888888999999999999999
Q ss_pred CcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 96 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
++++++.....|...+.... ++.|+++|+||+|+..
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~ 116 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLRE 116 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhh
Confidence 99999988765555544432 6899999999999965
No 99
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.91 E-value=4.2e-23 Score=140.31 Aligned_cols=113 Identities=19% Similarity=0.357 Sum_probs=91.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCccc--cCCceeeEEE--EEEEc--CEEEEEEEcCCCCCchhchHhhhcCCCEEEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~--~~~t~~~~~~--~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 91 (153)
+||+++|++|+|||||+++|.++.+.. +.+|.+..+. .+... ...+.+||++|++++...+..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 489999999999999999999988763 5666665432 33443 35778999999999988888899999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
||+++..++.....|+..+... .++.|+++|+||+|+.+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~ 119 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIE 119 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccc
Confidence 9999999998877766655332 25789999999999864
No 100
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.91 E-value=3.1e-24 Score=140.08 Aligned_cols=119 Identities=18% Similarity=0.378 Sum_probs=101.8
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEEE----EEEcCEEEEEEEcCCCCCchhchHhhhcCCCEE
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~----~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 88 (153)
...-+||++.|++|+|||||++++.+.+|.. +..|++....+ ++....-+++|||.|+++|..+.-.++|++|+.
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 3556999999999999999999999999874 46788766533 334557899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCC---CCceEEEEEeCCCccc
Q 031797 89 IFVVDSNDRDRVVEARDELHRMLNEDEL---RDAVLLVFANKQDLPN 132 (153)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~iivv~~K~Dl~~ 132 (153)
++|||+.++.||+.+..|-.+++.+... ..-|.|++|||+|+.+
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~ 132 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDG 132 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCC
Confidence 9999999999999999988888776432 3578999999999976
No 101
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.91 E-value=3.7e-23 Score=138.25 Aligned_cols=115 Identities=18% Similarity=0.246 Sum_probs=92.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEE-EEEEEc--CEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 93 (153)
+|++++|++|+|||||++++.++.+.. ..++....+ ..+... ...+.+||+||++.+...+..+++++|++++|+|
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 589999999999999999999988764 344443222 233333 3568899999999998888889999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
++++.++......|...+... .++.|+++++||+|+.+.
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~ 119 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDD 119 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcC
Confidence 999999998877666665544 478999999999998653
No 102
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.91 E-value=2.9e-23 Score=138.00 Aligned_cols=117 Identities=15% Similarity=0.264 Sum_probs=91.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEE-E--EEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEEC
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV-E--TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~-~--~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~ 94 (153)
.|++++|.+|+|||||++++.++.+....++..... . .+.....++.+||+||+..+...+..+++.+|++++|+|+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 489999999999999999999988765433322111 1 2233567899999999988877777778999999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCC
Q 031797 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (153)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~ 135 (153)
+++.++..+..+|...+.... ++.|+++|+||+|+.+...
T Consensus 81 ~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~ 120 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSS 120 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccc
Confidence 999999988776766655433 4799999999999976543
No 103
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.91 E-value=7e-23 Score=135.66 Aligned_cols=128 Identities=18% Similarity=0.283 Sum_probs=97.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC--Ccc-ccCCceeeEEEE--EE---EcCEEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLG--EIV-TTIPTIGFNVET--VE---YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~--~~~-~~~~t~~~~~~~--~~---~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
+|++++|++|+|||||++++.+. .+. .+.+|.+..... +. .....+.+||+||++.+...+..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 48999999999999999999864 344 345666655432 22 24479999999999999888889999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCC-----HHHHHHHhCCCc
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-----AAEITDKLGLHS 147 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~-----~~~~~~~~~~~~ 147 (153)
+|+|+++++++.....|+..+.... ++.|+++|+||+|+.+... ...+++..+.+.
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 141 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKF 141 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeE
Confidence 9999999999988777666554332 5689999999999965432 234455555443
No 104
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.91 E-value=1.8e-23 Score=142.32 Aligned_cols=130 Identities=15% Similarity=0.264 Sum_probs=95.5
Q ss_pred ccEEEEEcCCCCcHHHHHH-HHhcCCc-----c-ccCCceee-E-EE-----------EEEEcCEEEEEEEcCCCCCchh
Q 031797 17 EMRILMVGLDAAGKTTILY-KLKLGEI-----V-TTIPTIGF-N-VE-----------TVEYKNISFTVWDVGGQDKIRP 76 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~-~~~~~~~-----~-~~~~t~~~-~-~~-----------~~~~~~~~~~i~d~~g~~~~~~ 76 (153)
.+||+++|.+|+|||||+. ++.+..+ . .+.||.+. . +. .++.....+.+||++|++..
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4799999999999999995 6655433 2 33566642 1 11 12334589999999998753
Q ss_pred chHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc------------------------
Q 031797 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN------------------------ 132 (153)
Q Consensus 77 ~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~------------------------ 132 (153)
....+++++|++++|||++++.|+.++...|...+.... ++.|+++|+||+|+.+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 345578999999999999999999998765544444333 5789999999999863
Q ss_pred cCCHHHHHHHhCCCccc
Q 031797 133 AMNAAEITDKLGLHSLR 149 (153)
Q Consensus 133 ~~~~~~~~~~~~~~~~~ 149 (153)
.++.+++++++++++++
T Consensus 159 ~~e~~~~a~~~~~~~~E 175 (195)
T cd01873 159 PETGRAVAKELGIPYYE 175 (195)
T ss_pred HHHHHHHHHHhCCEEEE
Confidence 12577888888886653
No 105
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.91 E-value=5e-23 Score=144.72 Aligned_cols=125 Identities=19% Similarity=0.299 Sum_probs=97.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCccc-cCCcee-eEEEEEEEc--CEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG-FNVETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~-~~~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 93 (153)
+||+++|++|+|||||+++|.++.+.. +.+|.+ .....+... ...+.+||++|++.|...+..++..+|++++|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 589999999999999999999888764 355554 222333443 3788999999999998888888899999999999
Q ss_pred CCCcccHHHHHHHHHHHHcC--------CCCCCceEEEEEeCCCccc--cCCHHHHHHH
Q 031797 94 SNDRDRVVEARDELHRMLNE--------DELRDAVLLVFANKQDLPN--AMNAAEITDK 142 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~--------~~~~~~~iivv~~K~Dl~~--~~~~~~~~~~ 142 (153)
+++.++|+.+..|+..+... ....+.|+++|+||+|+.. ....+++.+.
T Consensus 81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~ 139 (247)
T cd04143 81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQL 139 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHH
Confidence 99999999988777776542 1235799999999999974 3344444443
No 106
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.90 E-value=5.1e-23 Score=140.55 Aligned_cols=124 Identities=24% Similarity=0.356 Sum_probs=96.8
Q ss_pred EcCCCCcHHHHHHHHhcCCccc-cCCceeeEEEEEE----EcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCc
Q 031797 23 VGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVE----YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (153)
Q Consensus 23 ~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~----~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~ 97 (153)
+|.+|+|||||++++..+.+.. +.+|.+....... ....++.+||++|++.|...+..++++++++++|||+++.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 5999999999999999888764 4677776554332 2458999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC---CHHHHHHHhCCCcc
Q 031797 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSL 148 (153)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~---~~~~~~~~~~~~~~ 148 (153)
.++..+..|+..+... . +++|+++|+||+|+.... ....+++..++.++
T Consensus 81 ~S~~~i~~w~~~i~~~-~-~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~ 132 (200)
T smart00176 81 VTYKNVPNWHRDLVRV-C-ENIPIVLCGNKVDVKDRKVKAKSITFHRKKNLQYY 132 (200)
T ss_pred HHHHHHHHHHHHHHHh-C-CCCCEEEEEECcccccccCCHHHHHHHHHcCCEEE
Confidence 9999988766656443 2 579999999999986432 12244444555443
No 107
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.90 E-value=9.9e-23 Score=134.65 Aligned_cols=131 Identities=20% Similarity=0.388 Sum_probs=102.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeEEE-EEE--EcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE-TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~~~-~~~--~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 93 (153)
+||+++|++|+|||||++++....+... .++....+. ... .....+.+||+||+..+...+..+++.++++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 5899999999999999999998876533 333332222 222 244689999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc--C---CHHHHHHHhCCCcc
Q 031797 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--M---NAAEITDKLGLHSL 148 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~--~---~~~~~~~~~~~~~~ 148 (153)
++++.++.....++..+.......+.|+++|+||+|+.+. . ....++++++++.+
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 140 (164)
T cd04139 81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYV 140 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEE
Confidence 9999999998888888876544468999999999999762 2 23456666666554
No 108
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.90 E-value=1e-22 Score=135.72 Aligned_cols=115 Identities=18% Similarity=0.379 Sum_probs=90.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeEE--EEEEEc--CEEEEEEEcCCCCCchhchHhhhcCCCEEEEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~~--~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 92 (153)
+||+++|++|+|||||++++.+..+... .++.+... ..+... ...+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 5899999999999999999998876533 34444433 233333 356789999999999988999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCC---CCCceEEEEEeCCCccc
Q 031797 93 DSNDRDRVVEARDELHRMLNEDE---LRDAVLLVFANKQDLPN 132 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~---~~~~~iivv~~K~Dl~~ 132 (153)
|++++.++.....|...++.... ..+.|+++|+||+|+.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence 99999988887776655544322 34799999999999973
No 109
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.90 E-value=3.3e-23 Score=137.49 Aligned_cols=130 Identities=17% Similarity=0.286 Sum_probs=94.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeE-EEEEEE--cCEEEEEEEcCCCCCc-hhchHhhhcCCCEEEEEEE
Q 031797 19 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEY--KNISFTVWDVGGQDKI-RPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~i~d~~g~~~~-~~~~~~~~~~~~~ii~v~d 93 (153)
||+++|++|+|||||++++....+.. +.++.... ...+.. ....+.+||+||+..+ ......+++.+|++++|+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 58999999999999999999877653 34443222 222233 4467899999999853 4456678899999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCC-CCCceEEEEEeCCCcccc-----CCHHHHHHHhCCCcc
Q 031797 94 SNDRDRVVEARDELHRMLNEDE-LRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSL 148 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~-~~~~~iivv~~K~Dl~~~-----~~~~~~~~~~~~~~~ 148 (153)
+++..++..+..|+..+..... ..+.|+++|+||+|+... .....+++.++.+++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 141 (165)
T cd04146 81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFF 141 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEE
Confidence 9999999888776655443221 357999999999998643 234566777776544
No 110
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.90 E-value=1.3e-23 Score=134.76 Aligned_cols=136 Identities=21% Similarity=0.454 Sum_probs=116.0
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeEEEE--E---EEcCEEEEEEEcCCCCCchhchHhhhcCCCEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET--V---EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~~~~--~---~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 88 (153)
...++++++|.+-+|||||++.|..+++.+- .||.+..... + .....++++||+.|+++|+....++++++-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 4678999999999999999999999999864 7888877531 2 23568999999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCceE-EEEEeCCCcccc-----CCHHHHHHHhCCCcccC
Q 031797 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVL-LVFANKQDLPNA-----MNAAEITDKLGLHSLRQ 150 (153)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i-ivv~~K~Dl~~~-----~~~~~~~~~~~~~~~~~ 150 (153)
++|||+++..||+....|+.+.......|..+| .+||+|+|+..+ ++++++++..++-+++.
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVET 153 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVET 153 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEe
Confidence 999999999999999999998876666566554 679999999754 57889999999887754
No 111
>PLN03108 Rab family protein; Provisional
Probab=99.90 E-value=9.3e-23 Score=140.47 Aligned_cols=132 Identities=20% Similarity=0.387 Sum_probs=103.3
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEE--EEEE--cCEEEEEEEcCCCCCchhchHhhhcCCCEEEE
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 90 (153)
..+||+++|++|+|||||++++.+..+.. ..+|.+.... .+.. ....+.+||++|++.+...+..+++.+|++++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl 84 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999887654 3556555432 2333 33678999999999999888899999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc-----CCHHHHHHHhCCCcc
Q 031797 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSL 148 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~-----~~~~~~~~~~~~~~~ 148 (153)
|+|++++.++..+..|+..+... ..+..|+++++||+|+.+. .+.++++++.+++++
T Consensus 85 v~D~~~~~s~~~l~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 146 (210)
T PLN03108 85 VYDITRRETFNHLASWLEDARQH-ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFM 146 (210)
T ss_pred EEECCcHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEE
Confidence 99999999999887777665433 2357999999999999653 234567777776554
No 112
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.90 E-value=1.9e-22 Score=139.96 Aligned_cols=129 Identities=18% Similarity=0.207 Sum_probs=94.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCcc--ccCCcee--eEEEEEEE--cCEEEEEEEcCCCCCchhchHhhhc-CCCEEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIG--FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQ-NTQGLIF 90 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~--~~~~t~~--~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~-~~~~ii~ 90 (153)
+||+++|++|+|||||+++|..+.+. ...++.+ .....+.. ....+.+||+||++. .....+++ ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999887764 3344443 22233333 557899999999982 23345566 8999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
|||++++.++.....++..+.......+.|+++|+||+|+.+.. +...+++..+.+++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~ 141 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFI 141 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEE
Confidence 99999999999888877666554334679999999999996542 23455555565543
No 113
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.90 E-value=2e-22 Score=133.12 Aligned_cols=109 Identities=16% Similarity=0.265 Sum_probs=86.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCccccC-CceeeEEEEEEEcC--EEEEEEEcCCCCCchhchHhhhcCCCEEEEEEEC
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~~~-~t~~~~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~ 94 (153)
+||+++|++|+|||||+.++..+.+.... ++.+.....+...+ ..+.+||++|++. ..+++.+|++++|||+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~ 75 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSL 75 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEEC
Confidence 48999999999999999999988776543 33333233444444 6799999999974 2456889999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031797 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~ 131 (153)
++++||+++..|+..+......++.|+++|+||+|+.
T Consensus 76 ~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~ 112 (158)
T cd04103 76 ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAIS 112 (158)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhh
Confidence 9999999998877777655444679999999999985
No 114
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.90 E-value=1.6e-22 Score=138.56 Aligned_cols=123 Identities=31% Similarity=0.433 Sum_probs=95.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEE----cCEEEEEEEcCCCCCchhchHhhhcCC-CEEEEEEE
Q 031797 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNT-QGLIFVVD 93 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~-~~ii~v~d 93 (153)
+|+++|++|+|||||++++....+....++.......+.. ++..+.+||+||+.+++..+..+++.+ ++++||+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 6899999999999999999998776555544444433333 367899999999999988888889998 99999999
Q ss_pred CCCc-ccHHHHHHHHHHHHcCC--CCCCceEEEEEeCCCccccCCHHHHHH
Q 031797 94 SNDR-DRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAMNAAEITD 141 (153)
Q Consensus 94 ~~~~-~s~~~~~~~~~~~~~~~--~~~~~~iivv~~K~Dl~~~~~~~~~~~ 141 (153)
+++. .++.....++..++... ..+++|+++++||+|+........+.+
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~ 132 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKE 132 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHH
Confidence 9987 67777777777665432 225899999999999987655444433
No 115
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.5e-23 Score=131.89 Aligned_cols=153 Identities=59% Similarity=0.990 Sum_probs=140.8
Q ss_pred CcchHHHHHhhcccc-cccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchH
Q 031797 1 MGLSFTKLFSKLFAK-KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 79 (153)
Q Consensus 1 ~~~~~~~~~~~~~~~-~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~ 79 (153)
|+..++.+++.+..+ +..+++++|--|+|||++..++.-++.....||.+.+..++..++.++++||..|+.+.++.|.
T Consensus 1 m~~g~~s~f~~L~g~e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWR 80 (182)
T KOG0072|consen 1 MGGGFSSLFKALQGPEREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWR 80 (182)
T ss_pred CCchHHHHHHHhcCCccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHH
Confidence 666788888888777 8899999999999999999988877778889999999999999999999999999999999999
Q ss_pred hhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCCCcccCCCC
Q 031797 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153 (153)
Q Consensus 80 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~ 153 (153)
.++.+.+++|||+|.++.+........+..++.+....+..+++++||.|........|....++++.+++|.|
T Consensus 81 cYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~ 154 (182)
T KOG0072|consen 81 CYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIW 154 (182)
T ss_pred HHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhhee
Confidence 99999999999999999998888888888888887777888999999999999999999999999999999876
No 116
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.2e-24 Score=139.09 Aligned_cols=133 Identities=27% Similarity=0.549 Sum_probs=112.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeEEEE--EEE-----------cCEEEEEEEcCCCCCchhchHhhhc
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET--VEY-----------KNISFTVWDVGGQDKIRPLWRHYFQ 83 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~~~~--~~~-----------~~~~~~i~d~~g~~~~~~~~~~~~~ 83 (153)
+|.+.+|.+|+||||++.++..++|... ..|.++.+.. +-+ ....+++||+.|+++|+.+.-.+++
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfR 89 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFR 89 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHH
Confidence 5788999999999999999998888765 5577766532 111 2367899999999999999999999
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc-----CCHHHHHHHhCCCcccC
Q 031797 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLRQ 150 (153)
Q Consensus 84 ~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~-----~~~~~~~~~~~~~~~~~ 150 (153)
++=+++++||.++.+||.+...|+..+-.+..-.+..|++++||+|+.+. ..+..+++++++|+++.
T Consensus 90 DAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfET 161 (219)
T KOG0081|consen 90 DAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFET 161 (219)
T ss_pred hhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeee
Confidence 99999999999999999999999998866655567779999999999875 35788999999999975
No 117
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.89 E-value=3e-22 Score=136.76 Aligned_cols=116 Identities=20% Similarity=0.258 Sum_probs=88.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEE--EEEEEcC--EEEEEEEcCCCCCchh--------chHhhhcC
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRP--------LWRHYFQN 84 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~--------~~~~~~~~ 84 (153)
+||+++|.+|||||||++++.++++.. +.||.+... ..+...+ .++.+||+||...+.. .....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 589999999999999999999988764 455655332 2333444 6888999999765421 12345789
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHHcCC--CCCCceEEEEEeCCCcccc
Q 031797 85 TQGLIFVVDSNDRDRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 85 ~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~iivv~~K~Dl~~~ 133 (153)
+|++++|||+++++|++....++..+.... ..+++|+++|+||+|+.+.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~ 131 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRH 131 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccc
Confidence 999999999999999998888777665543 2467999999999999653
No 118
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.89 E-value=2.6e-22 Score=131.51 Aligned_cols=113 Identities=25% Similarity=0.513 Sum_probs=93.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeEEEEE--EE--cCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETV--EY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~~~~~--~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 92 (153)
+||+++|++|+|||||++++.+..+... .+|.+...... .. ....+.+||+||+..+......+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999887654 56666655433 33 3478999999999999888999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031797 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~ 131 (153)
|+++++++.....|+..+... .....|+++++||+|+.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 81 DITNRESFENLDKWLKELKEY-APENIPIILVGNKIDLE 118 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEccccc
Confidence 999988888888866655544 22579999999999996
No 119
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.89 E-value=1.9e-22 Score=134.30 Aligned_cols=116 Identities=22% Similarity=0.351 Sum_probs=91.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCcc-ccCCceeeEE-EEEE--EcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~-~~~~t~~~~~-~~~~--~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 93 (153)
+||+++|++|+|||||++++.+..+. ...++..... ..+. .....+.+||+||++.+.......++.+|++++|+|
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999998874 3334333222 2222 235689999999999888888888899999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
++++.++......|...+.... ++.|+++|+||+|+.+..
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~ 120 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDE 120 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhch
Confidence 9999999888776666555433 479999999999997554
No 120
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.89 E-value=3.2e-22 Score=131.91 Aligned_cols=129 Identities=22% Similarity=0.424 Sum_probs=96.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeE--EEEEEE--cCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN--VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~--~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 92 (153)
+|++++|++|+|||||++++.+..+... .++.... ...+.. ....+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 5899999999999999999998876533 3333222 223333 3357999999999999888888999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCc
Q 031797 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHS 147 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~ 147 (153)
|+++.+++.....|+..+..... .+.|+++++||+|+.... ...++++..+.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 139 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKH 139 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEE
Confidence 99999999888776666544332 479999999999997532 2334455555543
No 121
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.89 E-value=2.4e-22 Score=135.14 Aligned_cols=130 Identities=22% Similarity=0.341 Sum_probs=102.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeE-EEEEEEc--CEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 93 (153)
.||+++|++|+|||||++++.+..+.. ..++.... ...+... ...+.+||+||++++...+..++..++++++|+|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 689999999999999999999887754 34444332 2333443 3578999999999999888899999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCc
Q 031797 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHS 147 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~ 147 (153)
+++..+++....++..+++.....+.|+++++||+|+.... ....+++.++.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 140 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAF 140 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeE
Confidence 99999999999988888876555678999999999997432 2344555555443
No 122
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.89 E-value=3.5e-22 Score=131.44 Aligned_cols=129 Identities=22% Similarity=0.378 Sum_probs=100.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCcccc-CCceee-EEEEEEEc--CEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEEC
Q 031797 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGF-NVETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~-~~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~ 94 (153)
||+++|++|+|||||++++.+..+... .++.+. ....+... ..++.+||+||+..+......+++++|++++|+|+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 689999999999999999998776533 333332 22234444 46899999999999988888999999999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc-----CCHHHHHHHhCCCc
Q 031797 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHS 147 (153)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~-----~~~~~~~~~~~~~~ 147 (153)
++++++.....++..+.........|+++++||+|+... +....+.++.+.+.
T Consensus 81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 138 (160)
T cd00876 81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPF 138 (160)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcE
Confidence 999999998888888876654468999999999999753 23445555555443
No 123
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.89 E-value=2e-22 Score=134.80 Aligned_cols=115 Identities=21% Similarity=0.379 Sum_probs=91.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEE-EEEEE--cCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 93 (153)
.||+++|++|+|||||++++.+..+.. +.+|.+... ..+.. ....+.+||++|++.+...+...++++|++++|+|
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~ 81 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 81 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence 689999999999999999999988764 445554332 23333 34678999999999998888788899999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
+++++++......|...+... .++.|+++++||+|+.+.
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~ 120 (175)
T cd01870 82 IDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRND 120 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhcccC
Confidence 999999988876565555432 257899999999998643
No 124
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.89 E-value=9.9e-23 Score=128.35 Aligned_cols=110 Identities=24% Similarity=0.428 Sum_probs=79.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCcc---cc----CCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEE
Q 031797 19 RILMVGLDAAGKTTILYKLKLGEIV---TT----IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~~~---~~----~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 91 (153)
||+|+|++|+|||||+++|.+.... .. ..+..............+.+||++|++.+.......+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999988765 11 1222222333333445699999999988887777778999999999
Q ss_pred EECCCcccHHHHHHH--HHHHHcCCCCCCceEEEEEeCCC
Q 031797 92 VDSNDRDRVVEARDE--LHRMLNEDELRDAVLLVFANKQD 129 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~--~~~~~~~~~~~~~~iivv~~K~D 129 (153)
||++++.++..+..+ |...+... ..++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~-~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR-DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH-SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc-CCCCCEEEEEeccC
Confidence 999999999887544 22222221 24699999999998
No 125
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.89 E-value=7.3e-22 Score=134.87 Aligned_cols=114 Identities=18% Similarity=0.291 Sum_probs=92.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCcccc-CCcee-eEEEEEEEcC--EEEEEEEcCCCCCchhchHhhhcCCCEEEEEEEC
Q 031797 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~-~~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~ 94 (153)
||+++|++|+|||||++++.+..+... .++.. .....+...+ ..+.+||+||+..+...+..+++.+|++++|+|+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 689999999999999999999877643 33332 2223344444 6899999999999988888889999999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
+++.+++....++..+.......+.|+++++||+|+..
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLE 118 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccc
Confidence 99999998888877776654446799999999999965
No 126
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.88 E-value=1.7e-21 Score=134.63 Aligned_cols=121 Identities=26% Similarity=0.440 Sum_probs=98.3
Q ss_pred hcccccccEEEEEcCCCCcHHHHHHHHhcCCcc-ccCCceeeEEEEEEE----cCEEEEEEEcCCCCCchhchHhhhcCC
Q 031797 11 KLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNT 85 (153)
Q Consensus 11 ~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~ 85 (153)
.......+|++++|++|+|||||+++++.+.+. .+.+|.+........ ....+.+||++|++.+...+..+++.+
T Consensus 3 ~~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~ 82 (215)
T PTZ00132 3 QMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKG 82 (215)
T ss_pred cccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccC
Confidence 344566799999999999999999988877765 456777766544332 457999999999999988888899999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 86 ~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
+++++|+|+++..++..+..|+..+.... .+.|+++++||+|+.+.
T Consensus 83 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~ 128 (215)
T PTZ00132 83 QCAIIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDR 128 (215)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccc
Confidence 99999999999999988887776664332 56899999999998654
No 127
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.88 E-value=9.4e-23 Score=130.34 Aligned_cols=135 Identities=21% Similarity=0.381 Sum_probs=108.7
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceee--EEEE--EEEcCEEEEEEEcCCCCCchhchHhhhcCCCEE
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGF--NVET--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~--~~~~--~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 88 (153)
....+|++++|+.=+|||||+-|+..++|... ..|... ...+ +......+.|||+.|+++|..+-+-++++++++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 35679999999999999999999998887643 223222 2223 334668999999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc-----CCHHHHHHHhCCCccc
Q 031797 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLR 149 (153)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~-----~~~~~~~~~~~~~~~~ 149 (153)
++|||+++.+||+....|..++-. .....+-+++|+||+|+..+ ++++..++.-|..+++
T Consensus 90 lLVyDITDrdSFqKVKnWV~Elr~-mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~e 154 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWVLELRT-MLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYME 154 (218)
T ss_pred EEEEeccchHHHHHHHHHHHHHHH-HhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhhee
Confidence 999999999999999999887743 33467889999999999754 4577777777776654
No 128
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.87 E-value=7.4e-21 Score=126.51 Aligned_cols=117 Identities=24% Similarity=0.447 Sum_probs=91.8
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEE--EEEEEcC--EEEEEEEcCCCCCchhchHhhhcCCCEEEE
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 90 (153)
..++++++|++|+|||||++++....+.. ..++.+... ..+...+ ..+.+||+||+..+......+++.+|++++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 45899999999999999999998776653 355555433 2344444 678999999999998888889999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
|+|+++..++.....|+..+ ......++|+++++||+|+.+.
T Consensus 86 v~d~~~~~s~~~~~~~~~~l-~~~~~~~~~~i~v~NK~D~~~~ 127 (169)
T cd04114 86 TYDITCEESFRCLPEWLREI-EQYANNKVITILVGNKIDLAER 127 (169)
T ss_pred EEECcCHHHHHHHHHHHHHH-HHhCCCCCeEEEEEECcccccc
Confidence 99999988888777665443 3333357999999999999754
No 129
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.87 E-value=3.6e-22 Score=133.66 Aligned_cols=118 Identities=19% Similarity=0.323 Sum_probs=101.7
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEE---EEEE-EcCEEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV---ETVE-YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~---~~~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
...+|++++|..++|||+++-.+..+.|++ +.||..-++ ..+. .+...+.+|||.|++.|..++...+..+|+++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 356899999999999999999998888874 466665433 2332 45578999999999999998888999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
+||++.+++|+++....|...+.+.. +++|+++||+|.||.++
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d 124 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDD 124 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhC
Confidence 99999999999999999998888877 89999999999999853
No 130
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.87 E-value=3.4e-21 Score=130.46 Aligned_cols=114 Identities=20% Similarity=0.346 Sum_probs=87.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeEE-EEEEEc--CEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~~-~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 93 (153)
.|++++|++|+|||||++++..+.+... .++....+ ..+... ...+.+||++|++.+.......++.++++++|||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~ 81 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA 81 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence 5899999999999999999987766532 33433222 223333 3568999999998887776677899999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
+++.+++......|...+.... ++.|+++|+||+|+.+
T Consensus 82 i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~ 119 (187)
T cd04129 82 VDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQ 119 (187)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhh
Confidence 9999999988765555554332 5799999999999854
No 131
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.86 E-value=2.2e-21 Score=131.82 Aligned_cols=133 Identities=20% Similarity=0.366 Sum_probs=111.3
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEE-EEEE--cCEEEEEEEcCCCCCchhchHhhhcCCCEEEEE
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 91 (153)
+.+|++++|.+|+|||+|..+|....|.. +.||.+..+. .+.. ....+.|+|++|++.+......+++.++++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 46899999999999999999999999875 4777764432 2333 447888999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc-----CCHHHHHHHhCCCcc
Q 031797 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSL 148 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~-----~~~~~~~~~~~~~~~ 148 (153)
|++++..||+.+...+..+.+......+|+++||||+|+... ++...++..++++++
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~ 143 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFI 143 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEE
Confidence 999999999999999888866555567899999999999863 346667888888844
No 132
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.7e-21 Score=122.54 Aligned_cols=134 Identities=23% Similarity=0.403 Sum_probs=113.4
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeEEE----EEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~~~----~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
+..+|.+++|.-|+|||+|++.|...+|... +.|++.++. .+..+..++++||+.|+++|+....++++++.+.+
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal 88 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 88 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence 4568999999999999999999999888754 557776653 45567799999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc-----CCHHHHHHHhCCCccc
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLR 149 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~-----~~~~~~~~~~~~~~~~ 149 (153)
+|+|++....+..+..|+... +....|+..|++++||.|+..+ +++.+++++-|+.+++
T Consensus 89 mvyditrrstynhlsswl~da-r~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle 152 (215)
T KOG0097|consen 89 MVYDITRRSTYNHLSSWLTDA-RNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLE 152 (215)
T ss_pred EEEEehhhhhhhhHHHHHhhh-hccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEE
Confidence 999999998888888888776 3445588999999999999865 3578888888877664
No 133
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.86 E-value=3.3e-23 Score=128.99 Aligned_cols=128 Identities=20% Similarity=0.480 Sum_probs=107.1
Q ss_pred EEcCCCCcHHHHHHHHhcCCccc--cCCceeeEEE----EEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECC
Q 031797 22 MVGLDAAGKTTILYKLKLGEIVT--TIPTIGFNVE----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (153)
Q Consensus 22 i~G~~~~GKtsli~~~~~~~~~~--~~~t~~~~~~----~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~ 95 (153)
++|.+++|||+|+-+|-.+.|.. ...|.++.+. .+..+..++++||+.|+++|+.....+++++|+.++++|+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 68999999999998887666652 2557777653 34456789999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc-----CCHHHHHHHhCCCcccC
Q 031797 96 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLRQ 150 (153)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~-----~~~~~~~~~~~~~~~~~ 150 (153)
+..||++.+.|+.++-.. ....+.+.+++||+|+..+ ++.+.+++.+++|+++.
T Consensus 82 nkasfdn~~~wlsei~ey-~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmet 140 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEY-AKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMET 140 (192)
T ss_pred cchhHHHHHHHHHHHHHH-HHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceec
Confidence 999999999998877443 3356778999999999653 57899999999999865
No 134
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.85 E-value=1.8e-20 Score=129.68 Aligned_cols=118 Identities=32% Similarity=0.466 Sum_probs=97.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEEEEEE--c--CEEEEEEEcCCCCCchhchHhhhcCCCEEEEE
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEY--K--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~--~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 91 (153)
.+||+++|++|+|||||++++.+..+.. ..+|.+..+..... . ..++.+||++|+++++..+..++++++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 4899999999999999999999998874 35555544433222 2 57799999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
+|.++..++.+....|...+........|+++++||+|+....
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~ 127 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQ 127 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccch
Confidence 9999877777777777766666544579999999999998764
No 135
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=5.4e-21 Score=123.86 Aligned_cols=145 Identities=40% Similarity=0.738 Sum_probs=122.8
Q ss_pred CcchHHHHHhhcccccccEEEEEcCCCCcHHHHHHHHhcCCc--------cccCCceeeEEEEEEEcCEEEEEEEcCCCC
Q 031797 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEI--------VTTIPTIGFNVETVEYKNISFTVWDVGGQD 72 (153)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~--------~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~ 72 (153)
|=..++.+++.......+.++|.|..++|||||+...-.... ..-.+|.+.+..++.....++.+||..|++
T Consensus 1 m~tl~~gl~~~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe 80 (197)
T KOG0076|consen 1 MFTLMSGLYKYMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQE 80 (197)
T ss_pred ChhHHHHHHHHHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChH
Confidence 334566777777888899999999999999999987632211 123678899999999999999999999999
Q ss_pred CchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCC
Q 031797 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL 145 (153)
Q Consensus 73 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~ 145 (153)
..+.+|..++..+|++++++|+++++.++.....+...+..-...++|+++.+||.|+.+..++.++..-++.
T Consensus 81 ~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~ 153 (197)
T KOG0076|consen 81 SLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGL 153 (197)
T ss_pred HHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhh
Confidence 9999999999999999999999999999888887777776655578999999999999999888888776663
No 136
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.83 E-value=1.4e-19 Score=120.39 Aligned_cols=117 Identities=26% Similarity=0.267 Sum_probs=80.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCcc-c--cCCceeeEEEEEEEcCE-EEEEEEcCCCCC----chhchH---hhhcCCCE
Q 031797 19 RILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNI-SFTVWDVGGQDK----IRPLWR---HYFQNTQG 87 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~~~-~--~~~t~~~~~~~~~~~~~-~~~i~d~~g~~~----~~~~~~---~~~~~~~~ 87 (153)
+|+++|.+|+|||||++++.+.+.. . ...|.......+...+. .+.+||+||... ...... ..++.+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 6899999999999999999876532 1 12233333444555555 999999999632 112222 23456999
Q ss_pred EEEEEECCCc-ccHHHHHHHHHHHHcCC-CCCCceEEEEEeCCCccccCC
Q 031797 88 LIFVVDSNDR-DRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAMN 135 (153)
Q Consensus 88 ii~v~d~~~~-~s~~~~~~~~~~~~~~~-~~~~~~iivv~~K~Dl~~~~~ 135 (153)
+++|+|+++. +++.....+...+.... ...+.|+++|+||+|+.+...
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~ 131 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEE 131 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchh
Confidence 9999999988 67777666555443321 124689999999999976544
No 137
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.83 E-value=3e-19 Score=116.56 Aligned_cols=118 Identities=25% Similarity=0.353 Sum_probs=88.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEEE--EEEcC--EEEEEEEcCCCCCchhchHhhhcCCCEEEEE
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--VEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~--~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 91 (153)
.+||+++|++|+|||||++++.+..+.. ..++.+..... +...+ ..+.+||+||+..+...+....+.++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 4799999999999999999999887542 34444444433 55556 7899999999999988888888999999999
Q ss_pred EECCCc-ccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 92 VDSNDR-DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 92 ~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
+|.... .++......+...+......+.|+++++||+|+....
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK 124 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch
Confidence 998766 5555554233333332222378999999999997643
No 138
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.83 E-value=1.6e-19 Score=121.10 Aligned_cols=124 Identities=18% Similarity=0.215 Sum_probs=86.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC--c-----c-ccCC------ceeeE----EEEE-----EEcCEEEEEEEcCCCCCc
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGE--I-----V-TTIP------TIGFN----VETV-----EYKNISFTVWDVGGQDKI 74 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~--~-----~-~~~~------t~~~~----~~~~-----~~~~~~~~i~d~~g~~~~ 74 (153)
.+|+++|++++|||||+++|++.. + . ...+ +.+.. .... ...+..+.+||+||++.+
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 379999999999999999998732 1 1 1111 11111 1122 234678999999999999
Q ss_pred hhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC---CHHHHHHHhCCC
Q 031797 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLH 146 (153)
Q Consensus 75 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~---~~~~~~~~~~~~ 146 (153)
...+..+++.+|++++|+|+++..+......+. .... .++|+++|+||+|+.+.. ...++++.++++
T Consensus 81 ~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~-~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~ 150 (179)
T cd01890 81 SYEVSRSLAACEGALLLVDATQGVEAQTLANFY-LALE----NNLEIIPVINKIDLPSADPERVKQQIEDVLGLD 150 (179)
T ss_pred HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHH-HHHH----cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCC
Confidence 888888999999999999998766555444333 2222 468899999999986532 234666666653
No 139
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.83 E-value=2.2e-19 Score=118.56 Aligned_cols=112 Identities=22% Similarity=0.159 Sum_probs=77.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC---ccc---cCCceeeEEEEEEEc-CEEEEEEEcCCCCCchhchHhhhcCCCEEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGE---IVT---TIPTIGFNVETVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~---~~~---~~~t~~~~~~~~~~~-~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 90 (153)
+.|+++|++|+|||||++++.+.. +.. ...|.+..+..+... +..+.+||+||++.+......+++++|++++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 368999999999999999998643 221 122444444455555 7799999999999887766777889999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
|+|+++... ......+. .+... ...|+++++||+|+.+.
T Consensus 81 V~d~~~~~~-~~~~~~~~-~~~~~--~~~~~ilv~NK~Dl~~~ 119 (164)
T cd04171 81 VVAADEGIM-PQTREHLE-ILELL--GIKRGLVVLTKADLVDE 119 (164)
T ss_pred EEECCCCcc-HhHHHHHH-HHHHh--CCCcEEEEEECccccCH
Confidence 999976211 11111111 11111 12489999999999764
No 140
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.82 E-value=4.4e-19 Score=133.70 Aligned_cols=125 Identities=18% Similarity=0.208 Sum_probs=91.1
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCc--cccCC--ceeeEEEEEEEcCEEEEEEEcCCCCCchhc--------hHhhh
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYF 82 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~~ 82 (153)
...++|+++|++|+|||||+|++.+... ....+ |.......+..++..+.+|||||...+... ...++
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~ 280 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAI 280 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHH
Confidence 5679999999999999999999998753 23333 334445567778899999999998655322 23567
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCCC
Q 031797 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 146 (153)
Q Consensus 83 ~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~~ 146 (153)
+.+|++++|+|++++.++... ++... .. .+.|+++|+||+|+.+. +..++++.++.+
T Consensus 281 ~~aD~il~V~D~s~~~s~~~~--~l~~~-~~---~~~piIlV~NK~Dl~~~-~~~~~~~~~~~~ 337 (442)
T TIGR00450 281 KQADLVIYVLDASQPLTKDDF--LIIDL-NK---SKKPFILVLNKIDLKIN-SLEFFVSSKVLN 337 (442)
T ss_pred hhCCEEEEEEECCCCCChhHH--HHHHH-hh---CCCCEEEEEECccCCCc-chhhhhhhcCCc
Confidence 899999999999988776554 44333 22 46899999999999755 344555555544
No 141
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.82 E-value=5e-19 Score=120.50 Aligned_cols=112 Identities=23% Similarity=0.272 Sum_probs=82.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhc--CCccccC-------------C----ceeeEEEEEEEcCEEEEEEEcCCCCCchhc
Q 031797 17 EMRILMVGLDAAGKTTILYKLKL--GEIVTTI-------------P----TIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~--~~~~~~~-------------~----t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 77 (153)
..+|+++|.+++|||||++++++ +.+.... . +.......+..+...+.+||+||++.|...
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 81 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGE 81 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHH
Confidence 35899999999999999999987 4433221 1 112223456677899999999999999989
Q ss_pred hHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 78 ~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
+..+++.+|++++|+|+++.. ......++... .. .++|+++++||+|+.+.
T Consensus 82 ~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~-~~---~~~p~iiv~NK~Dl~~~ 132 (194)
T cd01891 82 VERVLSMVDGVLLLVDASEGP-MPQTRFVLKKA-LE---LGLKPIVVINKIDRPDA 132 (194)
T ss_pred HHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHH-HH---cCCCEEEEEECCCCCCC
Confidence 999999999999999998632 22222223322 22 36899999999999653
No 142
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.82 E-value=1e-18 Score=116.10 Aligned_cols=115 Identities=17% Similarity=0.230 Sum_probs=78.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCcccc---CCceeeEEEEEEEcCEEEEEEEcCCCCCch---------hchHhhhcCCC
Q 031797 19 RILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYKNISFTVWDVGGQDKIR---------PLWRHYFQNTQ 86 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~---------~~~~~~~~~~~ 86 (153)
+|+++|++|+|||||++++.+..+... ..|.+.....+...+.++.+||+||+.... .........+|
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d 81 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRA 81 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccC
Confidence 789999999999999999998876421 224445555556677899999999974210 01111123368
Q ss_pred EEEEEEECCCcccH--HHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCC
Q 031797 87 GLIFVVDSNDRDRV--VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (153)
Q Consensus 87 ~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~ 135 (153)
++++|+|+++..++ .....++..+ .... .+.|+++++||+|+.+...
T Consensus 82 ~~l~v~d~~~~~~~~~~~~~~~~~~l-~~~~-~~~pvilv~NK~Dl~~~~~ 130 (168)
T cd01897 82 AVLFLFDPSETCGYSLEEQLSLFEEI-KPLF-KNKPVIVVLNKIDLLTFED 130 (168)
T ss_pred cEEEEEeCCcccccchHHHHHHHHHH-Hhhc-CcCCeEEEEEccccCchhh
Confidence 99999999876653 4444444433 3221 4789999999999976544
No 143
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.82 E-value=3.4e-19 Score=122.13 Aligned_cols=119 Identities=20% Similarity=0.241 Sum_probs=82.8
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc---cCCceeeEEEEEEEcCE-EEEEEEcCCCCCc---------hhchHhh
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGFNVETVEYKNI-SFTVWDVGGQDKI---------RPLWRHY 81 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~~-~~~i~d~~g~~~~---------~~~~~~~ 81 (153)
+..++|+++|++|+|||||++++.+..+.. ..+|.......+...+. .+.+||+||.... .... ..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HH
Confidence 456899999999999999999999876431 23344444444555443 8999999997321 1111 23
Q ss_pred hcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCC
Q 031797 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (153)
Q Consensus 82 ~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~ 135 (153)
+..+|++++|+|++++.++..... +...+......+.|+++|+||+|+.+...
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~-~~~~l~~~~~~~~~viiV~NK~Dl~~~~~ 170 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIET-VEKVLKELGAEDIPMILVLNKIDLLDDEE 170 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHH-HHHHHHHcCcCCCCEEEEEEccccCChHH
Confidence 568999999999998877765443 33333333335689999999999976544
No 144
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.81 E-value=9.6e-21 Score=123.50 Aligned_cols=133 Identities=20% Similarity=0.364 Sum_probs=111.7
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcc-ccCCceeeEEE----EEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~-~~~~t~~~~~~----~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
...+|++|+|+.++||+|+|++++.+-|. .+..|++.... .+...+.++.+||+.|+++|......+++++.+.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 45699999999999999999999988765 34556666543 34556788999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc-----CCHHHHHHHhCCCccc
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLR 149 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~-----~~~~~~~~~~~~~~~~ 149 (153)
+||+-++..||+...+|......+. ..+|.++|-||+|+.++ .+.+.+++.+.+..++
T Consensus 98 LVFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyR 160 (246)
T KOG4252|consen 98 LVFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYR 160 (246)
T ss_pred EEEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhh
Confidence 9999999999999999988886654 57999999999999754 4567777777776654
No 145
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.80 E-value=9.1e-19 Score=114.35 Aligned_cols=124 Identities=20% Similarity=0.276 Sum_probs=87.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCcc-cc--CCceeeEEEEEEEcCEEEEEEEcCCCCCc------hhchHhhh--cCCC
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKNISFTVWDVGGQDKI------RPLWRHYF--QNTQ 86 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~-~~--~~t~~~~~~~~~~~~~~~~i~d~~g~~~~------~~~~~~~~--~~~~ 86 (153)
++|+++|+||+|||||+|++.+.+.. .+ ..|.+.....+...+..+.++|+||--.+ +.....++ ++.|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 58999999999999999999998854 23 34667777888889999999999994222 22223333 5899
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC----CHHHHHHHhCCCcc
Q 031797 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSL 148 (153)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~----~~~~~~~~~~~~~~ 148 (153)
++++|+|+++. +........+.. .+.|+++++||+|+.... +.+.+.+.+++|.+
T Consensus 81 ~ii~VvDa~~l---~r~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi 139 (156)
T PF02421_consen 81 LIIVVVDATNL---ERNLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVI 139 (156)
T ss_dssp EEEEEEEGGGH---HHHHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EE
T ss_pred EEEEECCCCCH---HHHHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEE
Confidence 99999999863 333332333332 469999999999997653 57899999998865
No 146
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.80 E-value=8e-19 Score=113.50 Aligned_cols=113 Identities=29% Similarity=0.524 Sum_probs=88.3
Q ss_pred EEcCCCCcHHHHHHHHhcCCc-ccc-CCceeeEEEEEEEc----CEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECC
Q 031797 22 MVGLDAAGKTTILYKLKLGEI-VTT-IPTIGFNVETVEYK----NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (153)
Q Consensus 22 i~G~~~~GKtsli~~~~~~~~-~~~-~~t~~~~~~~~~~~----~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~ 95 (153)
++|++|+|||||++++.+... ... .++. ......... ...+.+||+||...+.......++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998776 322 3333 444444433 678999999999888777788889999999999999
Q ss_pred CcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCC
Q 031797 96 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (153)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~ 135 (153)
++.++.....++..........+.|+++++||+|+.....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~ 119 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERV 119 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccc
Confidence 9888888777744444444557899999999999976654
No 147
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.80 E-value=1.2e-19 Score=120.87 Aligned_cols=124 Identities=28% Similarity=0.467 Sum_probs=79.7
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEE---cCEEEEEEEcCCCCCchhchHh---hhcCCCEEE
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY---KNISFTVWDVGGQDKIRPLWRH---YFQNTQGLI 89 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~i~d~~g~~~~~~~~~~---~~~~~~~ii 89 (153)
+.-.|+++|++|+|||+|..++.++.......+..... .+.. .+..+.++|+|||.+.+..... +.+.+.++|
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---SSEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 34579999999999999999999987655544442222 2222 4568999999999998765444 378899999
Q ss_pred EEEECCC-cccHHHHHHHHHHHHcC--CCCCCceEEEEEeCCCccccCCHHHHH
Q 031797 90 FVVDSND-RDRVVEARDELHRMLNE--DELRDAVLLVFANKQDLPNAMNAAEIT 140 (153)
Q Consensus 90 ~v~d~~~-~~s~~~~~~~~~~~~~~--~~~~~~~iivv~~K~Dl~~~~~~~~~~ 140 (153)
||+|++. .....+..+++..++.. .....+|+++++||.|+........+.
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik 134 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIK 134 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHH
T ss_pred EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHH
Confidence 9999974 44566667777766543 234689999999999998765444333
No 148
>PRK15494 era GTPase Era; Provisional
Probab=99.80 E-value=1.6e-18 Score=127.00 Aligned_cols=114 Identities=16% Similarity=0.246 Sum_probs=81.7
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc----cCCceeeEEEEEEEcCEEEEEEEcCCCCC-chhc-------hHhhh
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEYKNISFTVWDVGGQDK-IRPL-------WRHYF 82 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~-~~~~-------~~~~~ 82 (153)
.+..+|+++|.+|+|||||+++|.+.++.. ..+|.......+...+..+.+|||||... +... ....+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 456799999999999999999999887642 23344444556677888999999999743 2221 11346
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 83 ~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
+++|++++|+|..+ ++.....++...+.. .+.|+++|+||+|+.+.
T Consensus 130 ~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~ 175 (339)
T PRK15494 130 HSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK 175 (339)
T ss_pred hhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc
Confidence 79999999999754 455555555555443 24567889999999754
No 149
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.80 E-value=1.5e-18 Score=115.19 Aligned_cols=110 Identities=22% Similarity=0.203 Sum_probs=80.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCcccc---CCceeeEEEEEEEc---CEEEEEEEcCCCCCchhchHhhhcCCCEEEEEE
Q 031797 19 RILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYK---NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~~~~~---~~t~~~~~~~~~~~---~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 92 (153)
.|+++|.+|+|||||++++....+... ..|.......+... +..+.+||+||+..+...+...++.+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 489999999999999999998776543 22333333344443 678999999999988888888889999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
|+++...... ...+. .+.. .+.|+++|+||+|+.+.
T Consensus 82 d~~~~~~~~~-~~~~~-~~~~---~~~p~ivv~NK~Dl~~~ 117 (168)
T cd01887 82 AADDGVMPQT-IEAIK-LAKA---ANVPFIVALNKIDKPNA 117 (168)
T ss_pred ECCCCccHHH-HHHHH-HHHH---cCCCEEEEEEceecccc
Confidence 9986432211 11111 1222 46899999999998754
No 150
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.80 E-value=3.1e-19 Score=115.67 Aligned_cols=109 Identities=22% Similarity=0.283 Sum_probs=74.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcCEEEEEEEcCCCC-----CchhchHhhhcCCCEEEEEEE
Q 031797 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQD-----KIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~-----~~~~~~~~~~~~~~~ii~v~d 93 (153)
||+++|++|+|||||++++.+..+. ..+|.+.. +.. .+||+||.. .+.... ..++++|++++|+|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~~~-----~~~---~~iDt~G~~~~~~~~~~~~~-~~~~~ad~vilv~d 71 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQAVE-----YND---GAIDTPGEYVENRRLYSALI-VTAADADVIALVQS 71 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-cccceeEE-----EcC---eeecCchhhhhhHHHHHHHH-HHhhcCCEEEEEec
Confidence 8999999999999999999887652 23333322 222 689999972 233332 34789999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-C---HHHHHHHhCC
Q 031797 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-N---AAEITDKLGL 145 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-~---~~~~~~~~~~ 145 (153)
++++.++.. ..|.... ..|+++++||+|+.+.. . ..+++++.+.
T Consensus 72 ~~~~~s~~~--~~~~~~~------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~ 119 (142)
T TIGR02528 72 ATDPESRFP--PGFASIF------VKPVIGLVTKIDLAEADVDIERAKELLETAGA 119 (142)
T ss_pred CCCCCcCCC--hhHHHhc------cCCeEEEEEeeccCCcccCHHHHHHHHHHcCC
Confidence 999888754 2233321 23899999999996532 2 2344555554
No 151
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.80 E-value=2.6e-18 Score=112.90 Aligned_cols=120 Identities=19% Similarity=0.249 Sum_probs=83.1
Q ss_pred EEcCCCCcHHHHHHHHhcCCcc-ccC--CceeeEEEEEEEcCEEEEEEEcCCCCCchh------chHhhhc--CCCEEEE
Q 031797 22 MVGLDAAGKTTILYKLKLGEIV-TTI--PTIGFNVETVEYKNISFTVWDVGGQDKIRP------LWRHYFQ--NTQGLIF 90 (153)
Q Consensus 22 i~G~~~~GKtsli~~~~~~~~~-~~~--~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~~~~--~~~~ii~ 90 (153)
++|.+|+|||||++++.+.... ... .|.......+...+..+.+||+||+..+.. ....++. .+|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 5899999999999999887533 222 244455566777778999999999876653 2444554 8999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC----CHHHHHHHhCCCcc
Q 031797 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSL 148 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~----~~~~~~~~~~~~~~ 148 (153)
|+|+++..... .++..+. . .+.|+++++||+|+.+.. ....+++.++.+.+
T Consensus 81 v~d~~~~~~~~---~~~~~~~-~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 135 (158)
T cd01879 81 VVDATNLERNL---YLTLQLL-E---LGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVV 135 (158)
T ss_pred EeeCCcchhHH---HHHHHHH-H---cCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeE
Confidence 99998754432 2222222 2 368999999999997643 34455566665543
No 152
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.79 E-value=5.6e-18 Score=110.95 Aligned_cols=111 Identities=20% Similarity=0.253 Sum_probs=81.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCcc--ccCC--ceeeEEEEEEEcCEEEEEEEcCCCCCchhc--------hHhhhcCC
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYFQNT 85 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~~~~~ 85 (153)
++|+++|++|+|||||++++.+.... ...+ +.......+...+.++.+||+||...+... ....+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 58999999999999999999987643 2222 223334455667789999999997655321 23456789
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCC
Q 031797 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (153)
Q Consensus 86 ~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~ 135 (153)
|++++|+|++++.+......+.. ..+.|+++++||+|+.+...
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~ 124 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSE 124 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCccc
Confidence 99999999998776665443332 25789999999999986544
No 153
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.79 E-value=3.9e-18 Score=130.05 Aligned_cols=113 Identities=21% Similarity=0.291 Sum_probs=83.1
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCcc--ccCC--ceeeEEEEEEEcCEEEEEEEcCCCCC--------chhchHhhhc
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDK--------IRPLWRHYFQ 83 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~~~~ 83 (153)
...+|+++|.+|||||||++++.+.... ...+ |...........+..+.+||+||.+. +......+++
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 3579999999999999999999987643 2222 33344555667788899999999763 3334556788
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 84 ~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
.+|++++|+|+++..+... ..+...+.. .+.|+++|+||+|+...
T Consensus 117 ~aD~il~VvD~~~~~s~~~--~~i~~~l~~---~~~piilV~NK~Dl~~~ 161 (472)
T PRK03003 117 TADAVLFVVDATVGATATD--EAVARVLRR---SGKPVILAANKVDDERG 161 (472)
T ss_pred hCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCcc
Confidence 9999999999987655532 333444443 57899999999998653
No 154
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.79 E-value=7.5e-18 Score=113.64 Aligned_cols=111 Identities=23% Similarity=0.210 Sum_probs=82.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCccccC-------------------CceeeEEEEEEEcCEEEEEEEcCCCCCchhchH
Q 031797 19 RILMVGLDAAGKTTILYKLKLGEIVTTI-------------------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 79 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~~~~~~-------------------~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~ 79 (153)
+|+++|.+|+|||||++++.+....... .+.......+......+.+||+||+..+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 4899999999999999999887554221 122233344556678999999999998888888
Q ss_pred hhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 80 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
.+++.+|++++|+|+.+..+.. ....+.. ... .+.|+++++||+|+..+.
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~-~~~---~~~~i~iv~nK~D~~~~~ 130 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQ-TREHLRI-ARE---GGLPIIVAINKIDRVGEE 130 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHH-HHHHHHH-HHH---CCCCeEEEEECCCCcchh
Confidence 8899999999999998654432 2222222 222 478999999999998643
No 155
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.79 E-value=1.7e-18 Score=115.63 Aligned_cols=116 Identities=23% Similarity=0.245 Sum_probs=80.4
Q ss_pred EEcCCCCcHHHHHHHHhcCCcc-c-c-CCceeeEEEEEEEc-CEEEEEEEcCCCCC----chh---chHhhhcCCCEEEE
Q 031797 22 MVGLDAAGKTTILYKLKLGEIV-T-T-IPTIGFNVETVEYK-NISFTVWDVGGQDK----IRP---LWRHYFQNTQGLIF 90 (153)
Q Consensus 22 i~G~~~~GKtsli~~~~~~~~~-~-~-~~t~~~~~~~~~~~-~~~~~i~d~~g~~~----~~~---~~~~~~~~~~~ii~ 90 (153)
++|++|+|||||++++.+.... . . ..|.......+... +.++.+||+||... .+. .+...++++|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 5899999999999999987642 1 1 23344444556666 88999999999632 111 22345788999999
Q ss_pred EEECCCc------ccHHHHHHHHHHHHcCCC------CCCceEEEEEeCCCccccCCHH
Q 031797 91 VVDSNDR------DRVVEARDELHRMLNEDE------LRDAVLLVFANKQDLPNAMNAA 137 (153)
Q Consensus 91 v~d~~~~------~s~~~~~~~~~~~~~~~~------~~~~~iivv~~K~Dl~~~~~~~ 137 (153)
|+|+++. .++.....+......... ..+.|+++|+||+|+.......
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~ 139 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELE 139 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHH
Confidence 9999887 456555555554433221 1468999999999997655433
No 156
>PRK04213 GTP-binding protein; Provisional
Probab=99.78 E-value=2.4e-19 Score=122.62 Aligned_cols=126 Identities=23% Similarity=0.337 Sum_probs=81.1
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEEEEEEcCEEEEEEEcCCC-----------CCchhchHhhh
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQ-----------DKIRPLWRHYF 82 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~d~~g~-----------~~~~~~~~~~~ 82 (153)
....+|+++|++|+|||||++++.+..+.. ..+..+.....+... .+.+||+||. +.++..+..++
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYI 84 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHHH
Confidence 456899999999999999999999877542 233333333333333 6899999993 44544444444
Q ss_pred c----CCCEEEEEEECCCcccHH---------HHHHHHHHHHcCCCCCCceEEEEEeCCCccccC--CHHHHHHHhCC
Q 031797 83 Q----NTQGLIFVVDSNDRDRVV---------EARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGL 145 (153)
Q Consensus 83 ~----~~~~ii~v~d~~~~~s~~---------~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~--~~~~~~~~~~~ 145 (153)
+ .++++++|+|.+...... .....+...+.. .++|+++|+||+|+.+.. ...++++.+++
T Consensus 85 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~ 159 (201)
T PRK04213 85 EDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNRDEVLDEIAERLGL 159 (201)
T ss_pred HhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcHHHHHHHHHHHhcC
Confidence 3 457888888876432210 011112222222 468999999999996543 45677777775
No 157
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.78 E-value=5.5e-18 Score=120.85 Aligned_cols=109 Identities=18% Similarity=0.141 Sum_probs=76.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCcc--cc-CCce-eeEEEEEEEcCEEEEEEEcCCCCCch--------hchHhhhcCCC
Q 031797 19 RILMVGLDAAGKTTILYKLKLGEIV--TT-IPTI-GFNVETVEYKNISFTVWDVGGQDKIR--------PLWRHYFQNTQ 86 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~~~--~~-~~t~-~~~~~~~~~~~~~~~i~d~~g~~~~~--------~~~~~~~~~~~ 86 (153)
+|+++|.+|+|||||+|++.+.+.. .. ..|+ ..........+..+.+|||||..... .....+++++|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 6899999999999999999998754 22 2232 22223334456789999999964321 11334678999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
++++|+|+++..+.. ..+...+.. .+.|+++|+||+|+.+.
T Consensus 82 vvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~ 122 (270)
T TIGR00436 82 LILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFK 122 (270)
T ss_pred EEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCH
Confidence 999999998766553 333444333 46899999999999754
No 158
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.78 E-value=5.4e-18 Score=111.08 Aligned_cols=120 Identities=21% Similarity=0.273 Sum_probs=82.2
Q ss_pred EEEcCCCCcHHHHHHHHhcCCcc--ccCC--ceeeEEEEEEEcCEEEEEEEcCCCCCchh--------chHhhhcCCCEE
Q 031797 21 LMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP--------LWRHYFQNTQGL 88 (153)
Q Consensus 21 ~i~G~~~~GKtsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~~~~~~~~~~i 88 (153)
+++|.+|+|||||++++.+.... ...+ |...........+..+.+||+||+..+.. .....++.+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 47999999999999999887532 2222 33344455666778999999999877543 334567889999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCC
Q 031797 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL 145 (153)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~ 145 (153)
++|+|..+..+... ..+...+.. .+.|+++|+||+|+.+.........++++
T Consensus 81 i~v~d~~~~~~~~~--~~~~~~~~~---~~~piiiv~nK~D~~~~~~~~~~~~~~~~ 132 (157)
T cd01894 81 LFVVDGREGLTPAD--EEIAKYLRK---SKKPVILVVNKVDNIKEEDEAAEFYSLGF 132 (157)
T ss_pred EEEEeccccCCccH--HHHHHHHHh---cCCCEEEEEECcccCChHHHHHHHHhcCC
Confidence 99999976443322 223333333 35899999999999876544334444444
No 159
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.78 E-value=4e-18 Score=125.24 Aligned_cols=117 Identities=22% Similarity=0.277 Sum_probs=85.1
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCcc-c--cCCceeeEEEEEEE-cCEEEEEEEcCCCCC---------chhchHhhh
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEY-KNISFTVWDVGGQDK---------IRPLWRHYF 82 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~~-~--~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~---------~~~~~~~~~ 82 (153)
..++|+++|.+|+|||||+|++.+.... . ..+|.+.....+.. .+..+.+|||+|..+ |.... ..+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EEV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HHH
Confidence 4589999999999999999999987643 1 24566666666666 467999999999721 22222 246
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 83 ~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
+++|++++|+|++++.+...... +...+......+.|+++|+||+|+.+..
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~-~~~~L~~l~~~~~piIlV~NK~Dl~~~~ 317 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEA-VEKVLEELGAEDIPQLLVYNKIDLLDEP 317 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHH-HHHHHHHhccCCCCEEEEEEeecCCChH
Confidence 78999999999998877655433 3333333333578999999999997543
No 160
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.78 E-value=1.2e-17 Score=118.79 Aligned_cols=126 Identities=21% Similarity=0.262 Sum_probs=89.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCC--ccc-----------------------cCCceeeEEEEEEEcCEEEEEEEcCCC
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGE--IVT-----------------------TIPTIGFNVETVEYKNISFTVWDVGGQ 71 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~--~~~-----------------------~~~t~~~~~~~~~~~~~~~~i~d~~g~ 71 (153)
..+|+++|++|+|||||+++++... ... ...+.......+.+++.++.+||+||+
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~ 81 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH 81 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence 3689999999999999999997421 100 011222334467778999999999999
Q ss_pred CCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCC---HHHHHHHhCCCc
Q 031797 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHS 147 (153)
Q Consensus 72 ~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~---~~~~~~~~~~~~ 147 (153)
..|.......++.+|++++|+|+++.... .....| ..... .++|+++++||+|+.+... .+++++.++.+.
T Consensus 82 ~df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~-~~~~~---~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~~~~ 155 (267)
T cd04169 82 EDFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLF-EVCRL---RGIPIITFINKLDREGRDPLELLDEIEEELGIDC 155 (267)
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHH-HHHHh---cCCCEEEEEECCccCCCCHHHHHHHHHHHHCCCc
Confidence 98877677788999999999999764322 222333 33332 4689999999999876543 567777777644
No 161
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.78 E-value=1.1e-17 Score=122.04 Aligned_cols=117 Identities=23% Similarity=0.266 Sum_probs=85.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCcc--cc-CCceeeEEEEEEE-cCEEEEEEEcCCCCC-------chhchHhhhcCCC
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEY-KNISFTVWDVGGQDK-------IRPLWRHYFQNTQ 86 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~--~~-~~t~~~~~~~~~~-~~~~~~i~d~~g~~~-------~~~~~~~~~~~~~ 86 (153)
..|.++|.+|||||||++++.+.+.. .+ ..|.......+.. ...++.+||+||... +...+...++.++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~ 238 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 238 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence 56899999999999999999876533 22 3455566666666 457899999999632 2333445667899
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCC-CCCCceEEEEEeCCCccccC
Q 031797 87 GLIFVVDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~iivv~~K~Dl~~~~ 134 (153)
++++|+|+++.++++....|...+.... ...+.|+++|+||+|+.+..
T Consensus 239 vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~ 287 (335)
T PRK12299 239 LLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEE 287 (335)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCch
Confidence 9999999998777777766655543321 12468999999999997654
No 162
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.77 E-value=1.4e-17 Score=109.23 Aligned_cols=130 Identities=25% Similarity=0.375 Sum_probs=103.9
Q ss_pred ccccccEEEEEcCCCCcHHHHHHHHhcCCcc----------cc---CCceeeEEEEEEEcC-EEEEEEEcCCCCCchhch
Q 031797 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV----------TT---IPTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLW 78 (153)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~----------~~---~~t~~~~~~~~~~~~-~~~~i~d~~g~~~~~~~~ 78 (153)
......||++.|+-++||||++..+...... .. ..|....+......+ ..+.++++|||++|...|
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMW 85 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHH
Confidence 3466789999999999999999999765421 11 145566677777766 899999999999999999
Q ss_pred HhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCCC
Q 031797 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 146 (153)
Q Consensus 79 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~~ 146 (153)
....+++.+.++++|.+.+..+ ....+.+++... ..+|+++++||.|+.+....+++++-+.++
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~--~a~~ii~f~~~~--~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~ 149 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITF--HAEEIIDFLTSR--NPIPVVVAINKQDLFDALPPEKIREALKLE 149 (187)
T ss_pred HHHhCCcceEEEEEecCCCcch--HHHHHHHHHhhc--cCCCEEEEeeccccCCCCCHHHHHHHHHhc
Confidence 9999999999999999988877 333344444442 129999999999999999888888877666
No 163
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.77 E-value=1.6e-17 Score=121.10 Aligned_cols=122 Identities=22% Similarity=0.263 Sum_probs=83.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCcc--cc-CCceeeEEEEEEEcC-EEEEEEEcCCCCC-------chhchHhhhcCCC
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEYKN-ISFTVWDVGGQDK-------IRPLWRHYFQNTQ 86 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~--~~-~~t~~~~~~~~~~~~-~~~~i~d~~g~~~-------~~~~~~~~~~~~~ 86 (153)
..|+++|.+++|||||++++.+.+.. .+ ..|.......+...+ .++.+||+||... +...+...++.++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad 237 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 237 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence 57899999999999999999876532 11 334445555566655 8999999999642 2223344566899
Q ss_pred EEEEEEECCCc---ccHHHHHHHHHHHHcC-CCCCCceEEEEEeCCCccccCCHHHH
Q 031797 87 GLIFVVDSNDR---DRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAMNAAEI 139 (153)
Q Consensus 87 ~ii~v~d~~~~---~s~~~~~~~~~~~~~~-~~~~~~~iivv~~K~Dl~~~~~~~~~ 139 (153)
++++|+|+++. ++++....+...+... ....+.|+++|+||+|+.++....++
T Consensus 238 ~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~ 294 (329)
T TIGR02729 238 VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAEL 294 (329)
T ss_pred EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHH
Confidence 99999999876 4555555444433221 12246899999999999765443333
No 164
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.77 E-value=1.5e-17 Score=113.08 Aligned_cols=111 Identities=19% Similarity=0.119 Sum_probs=74.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC----Cccc------cCCceeeEEEEEEEc--------------CEEEEEEEcCCCCC
Q 031797 18 MRILMVGLDAAGKTTILYKLKLG----EIVT------TIPTIGFNVETVEYK--------------NISFTVWDVGGQDK 73 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~----~~~~------~~~t~~~~~~~~~~~--------------~~~~~i~d~~g~~~ 73 (153)
++|+++|++++|||||++++.+. .+.. ...|.+.....+... +..+.+||+||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999873 1111 123444433333332 67999999999976
Q ss_pred chhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 74 ~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
+........+.+|++++|+|+++.........+. .... .+.|+++++||+|+...
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~ 135 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPE 135 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCH
Confidence 6444445567789999999998643333222211 1111 24699999999999753
No 165
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.76 E-value=1.1e-17 Score=112.56 Aligned_cols=115 Identities=22% Similarity=0.297 Sum_probs=75.7
Q ss_pred hcccccccEEEEEcCCCCcHHHHHHHHhcCCcc-ccCCc----eeeEEEEEEEcCEEEEEEEcCCCCC----------ch
Q 031797 11 KLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPT----IGFNVETVEYKNISFTVWDVGGQDK----------IR 75 (153)
Q Consensus 11 ~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~-~~~~t----~~~~~~~~~~~~~~~~i~d~~g~~~----------~~ 75 (153)
+.+..+..+|+++|.+|+|||||++++.+..+. ...++ ........ . ..+.+||+||... +.
T Consensus 12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~~~~~~~~ 88 (179)
T TIGR03598 12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYAKVSKEEKEKWQ 88 (179)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-CcEEEEeCCCCccccCChhHHHHHH
Confidence 445577899999999999999999999987532 22222 22222222 2 3799999999532 22
Q ss_pred hchHhhhc---CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 76 PLWRHYFQ---NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 76 ~~~~~~~~---~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
.....+++ .++++++|+|+++.-+.... .+...+.. .+.|+++++||+|+.+.
T Consensus 89 ~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~---~~~pviiv~nK~D~~~~ 144 (179)
T TIGR03598 89 KLIEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE---RGIPVLIVLTKADKLKK 144 (179)
T ss_pred HHHHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECcccCCH
Confidence 22233444 35899999999765443332 22333333 46899999999999754
No 166
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.76 E-value=2.4e-17 Score=108.68 Aligned_cols=111 Identities=20% Similarity=0.210 Sum_probs=76.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCcccc---CC-ceeeEEEEEEEcCEEEEEEEcCCCCCchh--------chHhhhcC
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT---IP-TIGFNVETVEYKNISFTVWDVGGQDKIRP--------LWRHYFQN 84 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~---~~-t~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~~~~~~~ 84 (153)
..+|+++|++|+|||||++++.+.+.... .. +.......+...+..+.+||+||...... .....+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999998764321 11 22222233445668899999999754422 23345788
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 85 ~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
+|++++|+|+++. +.....++...+.. .+.|+++++||+|+..
T Consensus 83 ~d~i~~v~d~~~~--~~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~ 125 (168)
T cd04163 83 VDLVLFVVDASEP--IGEGDEFILELLKK---SKTPVILVLNKIDLVK 125 (168)
T ss_pred CCEEEEEEECCCc--cCchHHHHHHHHHH---hCCCEEEEEEchhccc
Confidence 9999999999876 22223333333333 2689999999999983
No 167
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.76 E-value=4.2e-17 Score=108.33 Aligned_cols=112 Identities=21% Similarity=0.272 Sum_probs=77.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCcc--ccCC--ceeeEEEEEEEcCEEEEEEEcCCCCCch-----------hchHhh
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIR-----------PLWRHY 81 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~d~~g~~~~~-----------~~~~~~ 81 (153)
.++|+++|.+|+|||||++++.+.... ...+ +.......+...+..+.+||+||..... ......
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 578999999999999999999887532 1222 2223334455677789999999964331 111234
Q ss_pred hcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 82 ~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
++.+|++++|+|++++.+.... . +...... .+.|+++++||+|+.+.
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~-~-~~~~~~~---~~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDL-R-IAGLILE---EGKALVIVVNKWDLVEK 128 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHH-H-HHHHHHh---cCCCEEEEEeccccCCc
Confidence 6789999999999887665432 2 2222222 35899999999999765
No 168
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.76 E-value=1.8e-17 Score=126.40 Aligned_cols=113 Identities=20% Similarity=0.232 Sum_probs=81.7
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCcc--ccCC--ceeeEEEEEEEcCEEEEEEEcCCCC----------Cchhc-hHh
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQD----------KIRPL-WRH 80 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~d~~g~~----------~~~~~-~~~ 80 (153)
...+|+++|.+|+|||||++++++.... ...+ |.......+...+..+.+||+||.. .+... ...
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 4689999999999999999999987642 2222 3333345566778889999999952 22222 123
Q ss_pred hhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 81 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
+++.+|++++|+|+++..++.... .+... .. .+.|+++|+||+|+.+.
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~-~~~~~-~~---~~~piIiV~NK~Dl~~~ 337 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQR-VLSMV-IE---AGRALVLAFNKWDLVDE 337 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHH-HHHHH-HH---cCCCEEEEEECcccCCh
Confidence 578999999999999887776553 23332 22 46899999999999754
No 169
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.76 E-value=1.9e-17 Score=125.39 Aligned_cols=112 Identities=21% Similarity=0.307 Sum_probs=83.7
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCc--ccc--CCceeeEEEEEEEcCEEEEEEEcCCCCCchhc--------hHhhh
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTT--IPTIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYF 82 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~--~~~--~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~~ 82 (153)
...++|+++|.+|+|||||+|++.+... ... ..|.+.....+...+.++.+|||||...+... ....+
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 4568999999999999999999998763 222 23444555667778889999999998654322 22357
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 83 ~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
+.+|++++|+|++++.++.... .|.. ..+.|+++|+||+|+.+.
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~-~l~~------~~~~piiiV~NK~DL~~~ 336 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDE-ILEE------LKDKPVIVVLNKADLTGE 336 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHH-HHHh------cCCCCcEEEEEhhhcccc
Confidence 8899999999999887766432 2222 256899999999999654
No 170
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.75 E-value=2.3e-17 Score=115.45 Aligned_cols=122 Identities=22% Similarity=0.211 Sum_probs=87.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCc--------------ccc-------CCceeeEEEEEEEcCEEEEEEEcCCCCCchhc
Q 031797 19 RILMVGLDAAGKTTILYKLKLGEI--------------VTT-------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~~--------------~~~-------~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 77 (153)
+|.++|+.|+|||||+++++...- .+. ..+.......+.+++.++.+||+||+..|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 589999999999999999975310 000 11223344566778999999999999999888
Q ss_pred hHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc---CCHHHHHHHhCC
Q 031797 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA---MNAAEITDKLGL 145 (153)
Q Consensus 78 ~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~---~~~~~~~~~~~~ 145 (153)
+..+++.+|++++|+|+++.... ....+|. .+.. .+.|+++++||+|+.+. ...+++.+.++.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~-~~~~---~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~ 146 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWR-LLRK---LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSS 146 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHH-HHHH---cCCCEEEEEECccccCCCHHHHHHHHHHHHCC
Confidence 88899999999999999865332 2233333 3333 46899999999999853 345566665544
No 171
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.75 E-value=3.7e-17 Score=123.72 Aligned_cols=110 Identities=22% Similarity=0.305 Sum_probs=80.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCcc--ccC--CceeeEEEEEEEcCEEEEEEEcCCCCC--------chhchHhhhcCC
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTI--PTIGFNVETVEYKNISFTVWDVGGQDK--------IRPLWRHYFQNT 85 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~--~~~--~t~~~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~~~~~~ 85 (153)
.+|+++|.+|||||||++++.+.+.. ... .|.......+...+..+.+|||||... +......+++.+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 57999999999999999999987642 222 244455566777889999999999876 233345677899
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 86 ~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
|++++|+|+++..+.. ...+...+.. .+.|+++|+||+|+.+
T Consensus 82 d~il~vvd~~~~~~~~--~~~~~~~l~~---~~~piilv~NK~D~~~ 123 (435)
T PRK00093 82 DVILFVVDGRAGLTPA--DEEIAKILRK---SNKPVILVVNKVDGPD 123 (435)
T ss_pred CEEEEEEECCCCCCHH--HHHHHHHHHH---cCCcEEEEEECccCcc
Confidence 9999999997643332 2222333333 3689999999999765
No 172
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.74 E-value=3.5e-17 Score=123.63 Aligned_cols=122 Identities=22% Similarity=0.280 Sum_probs=84.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCcc--ccC--CceeeEEEEEEEcCEEEEEEEcCCCC--------CchhchHhhhcCCC
Q 031797 19 RILMVGLDAAGKTTILYKLKLGEIV--TTI--PTIGFNVETVEYKNISFTVWDVGGQD--------KIRPLWRHYFQNTQ 86 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~~~--~~~--~t~~~~~~~~~~~~~~~~i~d~~g~~--------~~~~~~~~~~~~~~ 86 (153)
+|+++|.+|||||||+|++.+.... ... .|...........+..+.+|||||.. .+......+++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 5899999999999999999987642 222 24445566677788899999999963 23344566788999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCC
Q 031797 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL 145 (153)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~ 145 (153)
++++|+|+.+..+.. ...+...+++ .+.|+++|+||+|+.+......-..++++
T Consensus 81 ~vl~vvD~~~~~~~~--d~~i~~~l~~---~~~piilVvNK~D~~~~~~~~~~~~~lg~ 134 (429)
T TIGR03594 81 VILFVVDGREGLTPE--DEEIAKWLRK---SGKPVILVANKIDGKKEDAVAAEFYSLGF 134 (429)
T ss_pred EEEEEEeCCCCCCHH--HHHHHHHHHH---hCCCEEEEEECccCCcccccHHHHHhcCC
Confidence 999999997643332 2333344443 46899999999998765432222334444
No 173
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.74 E-value=3.9e-17 Score=126.67 Aligned_cols=114 Identities=18% Similarity=0.229 Sum_probs=83.9
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCcccc-C--CceeeEEEEEEEcCE-EEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-I--PTIGFNVETVEYKNI-SFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~--~t~~~~~~~~~~~~~-~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
..+..+|+++|+.++|||||++++.+..+... . .|.......+...+. .+.+||||||+.|...+....+.+|+++
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 45778999999999999999999988766532 1 233333444555444 8999999999999988888889999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
+|+|+++.... .....+... . ..++|+++++||+|+.+
T Consensus 164 LVVda~dgv~~-qT~e~i~~~-~---~~~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 164 LVVAADDGVMP-QTIEAISHA-K---AANVPIIVAINKIDKPE 201 (587)
T ss_pred EEEECCCCCCH-hHHHHHHHH-H---HcCCCEEEEEECccccc
Confidence 99998753222 222222222 2 24689999999999965
No 174
>PRK00089 era GTPase Era; Reviewed
Probab=99.73 E-value=9.9e-17 Score=115.62 Aligned_cols=112 Identities=21% Similarity=0.237 Sum_probs=76.5
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCccc--c-CCceeeE-EEEEEEcCEEEEEEEcCCCCCch--------hchHhhhc
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT--T-IPTIGFN-VETVEYKNISFTVWDVGGQDKIR--------PLWRHYFQ 83 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~--~-~~t~~~~-~~~~~~~~~~~~i~d~~g~~~~~--------~~~~~~~~ 83 (153)
+.-.|+++|++|+|||||+|++++.+... . ..|+... .......+..+.++||||..... ......+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 45679999999999999999999887542 1 2222222 22233355799999999964432 22334567
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 84 ~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
.+|++++|+|+++. +.....++...+.. .+.|+++|+||+|+..
T Consensus 84 ~~D~il~vvd~~~~--~~~~~~~i~~~l~~---~~~pvilVlNKiDl~~ 127 (292)
T PRK00089 84 DVDLVLFVVDADEK--IGPGDEFILEKLKK---VKTPVILVLNKIDLVK 127 (292)
T ss_pred cCCEEEEEEeCCCC--CChhHHHHHHHHhh---cCCCEEEEEECCcCCC
Confidence 89999999999872 22333444444432 4689999999999983
No 175
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.73 E-value=1.1e-16 Score=102.02 Aligned_cols=121 Identities=25% Similarity=0.355 Sum_probs=93.1
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcc---ccCCceeeEEE-EEEE---cCEEEEEEEcCCCCCc-hhchHhhhcCCC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNVE-TVEY---KNISFTVWDVGGQDKI-RPLWRHYFQNTQ 86 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~---~~~~t~~~~~~-~~~~---~~~~~~i~d~~g~~~~-~~~~~~~~~~~~ 86 (153)
-+..|++++|..++|||+++..++.+.-. +..+|.+-.+. .++- -...+.++||.|...+ ..+-..+++-+|
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 35689999999999999999999866543 23445543332 2222 3368999999998777 566778899999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCC
Q 031797 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (153)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~ 135 (153)
++++||+..+++||+.....-..+-.......+||++++||+|+.++.+
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~ 135 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPRE 135 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchh
Confidence 9999999999999987766555555566678899999999999976543
No 176
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.73 E-value=1.1e-16 Score=120.84 Aligned_cols=111 Identities=19% Similarity=0.237 Sum_probs=79.2
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCcc--ccC--CceeeEEEEEEEcCEEEEEEEcCCCCCchhc-----------hHh
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTI--PTIGFNVETVEYKNISFTVWDVGGQDKIRPL-----------WRH 80 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~~--~~~--~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-----------~~~ 80 (153)
..++++++|.+|+|||||++++++.... ... .|.......+...+..+.+||+||....... ...
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 4589999999999999999999987532 222 2333334455567779999999997544221 134
Q ss_pred hhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031797 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 81 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~ 131 (153)
+++.+|++++|+|+++..+.... .+...... .+.|+++|+||+|+.
T Consensus 251 ~~~~ad~~ilV~D~~~~~~~~~~--~~~~~~~~---~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 251 AIERADVVLLVLDATEGITEQDL--RIAGLILE---AGKALVIVVNKWDLV 296 (429)
T ss_pred HHHhCCEEEEEEECCCCccHHHH--HHHHHHHH---cCCcEEEEEECcccC
Confidence 67899999999999876555443 22333222 468999999999997
No 177
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.73 E-value=6.9e-17 Score=128.26 Aligned_cols=115 Identities=19% Similarity=0.225 Sum_probs=85.5
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCcccc-C--CceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEE
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-I--PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~--~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 90 (153)
..+...|+++|+.++|||||+++|.+..+... . .|..+....+...+..+.+||||||+.|...+....+.+|++++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 46788999999999999999999988765432 1 13333334566677899999999999999888888999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
|+|+++.-.. .....+... . ..++|+++++||+|+.+.
T Consensus 367 VVdAddGv~~-qT~e~i~~a-~---~~~vPiIVviNKiDl~~a 404 (787)
T PRK05306 367 VVAADDGVMP-QTIEAINHA-K---AAGVPIIVAINKIDKPGA 404 (787)
T ss_pred EEECCCCCCH-hHHHHHHHH-H---hcCCcEEEEEECcccccc
Confidence 9999763211 112222222 2 246899999999999653
No 178
>PRK11058 GTPase HflX; Provisional
Probab=99.72 E-value=1.2e-16 Score=120.04 Aligned_cols=115 Identities=18% Similarity=0.252 Sum_probs=80.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCccc---cCCceeeEEEEEEEcCE-EEEEEEcCCCCCc--hhch------HhhhcCC
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGFNVETVEYKNI-SFTVWDVGGQDKI--RPLW------RHYFQNT 85 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~~-~~~i~d~~g~~~~--~~~~------~~~~~~~ 85 (153)
.+|+++|.+|+|||||+|++.+.+... ...|.+.....+...+. .+.+|||+|..+. ...+ ...++.+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 589999999999999999999876431 23455555555666553 8899999997332 1112 2235789
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 86 ~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
|++++|+|++++.+...... +...+......+.|+++|+||+|+.+.
T Consensus 278 DlIL~VvDaS~~~~~e~l~~-v~~iL~el~~~~~pvIiV~NKiDL~~~ 324 (426)
T PRK11058 278 TLLLHVVDAADVRVQENIEA-VNTVLEEIDAHEIPTLLVMNKIDMLDD 324 (426)
T ss_pred CEEEEEEeCCCccHHHHHHH-HHHHHHHhccCCCCEEEEEEcccCCCc
Confidence 99999999998876655432 222333322257899999999999653
No 179
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.72 E-value=2.5e-16 Score=117.90 Aligned_cols=126 Identities=25% Similarity=0.330 Sum_probs=84.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCcc--c-cCCceeeEEEEEEEc-CEEEEEEEcCCCCC-------chhchHhhhcCCCE
Q 031797 19 RILMVGLDAAGKTTILYKLKLGEIV--T-TIPTIGFNVETVEYK-NISFTVWDVGGQDK-------IRPLWRHYFQNTQG 87 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~~~--~-~~~t~~~~~~~~~~~-~~~~~i~d~~g~~~-------~~~~~~~~~~~~~~ 87 (153)
.|.++|.+|||||||++++.+.+.. . +..|.......+... +..+.+||+||... +...+...++.+++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~l 239 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRV 239 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCE
Confidence 8999999999999999999987632 2 233555555556665 68899999999632 12233445667999
Q ss_pred EEEEEECCCc---ccHHHHHHHHHHHHcCC-CCCCceEEEEEeCCCccccC-CHHHHHHHhC
Q 031797 88 LIFVVDSNDR---DRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAM-NAAEITDKLG 144 (153)
Q Consensus 88 ii~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~~~~iivv~~K~Dl~~~~-~~~~~~~~~~ 144 (153)
+++|+|+++. +++.+...+...+.... ...+.|+++|+||+|+.+.. ..+++++.++
T Consensus 240 lI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~ 301 (424)
T PRK12297 240 IVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLG 301 (424)
T ss_pred EEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhC
Confidence 9999999754 45555444333332211 12468999999999985432 2445555554
No 180
>COG1159 Era GTPase [General function prediction only]
Probab=99.72 E-value=6e-17 Score=113.93 Aligned_cols=122 Identities=19% Similarity=0.199 Sum_probs=87.8
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcc--cc--CCceeeEEEEEEEcCEEEEEEEcCCCCC--------chhchHhhh
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TT--IPTIGFNVETVEYKNISFTVWDVGGQDK--------IRPLWRHYF 82 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~--~~--~~t~~~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~~~ 82 (153)
.+.-.|+++|.||+|||||+|++.+.+.. +. ..|.....+.+...+..+.+.||||-.. +.......+
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 34567899999999999999999999864 22 3344455566777889999999999422 223344567
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCC-HHHHHH
Q 031797 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITD 141 (153)
Q Consensus 83 ~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~-~~~~~~ 141 (153)
.++|+++||+|+++. +.....++.+.+.. .+.|+++++||+|...+.. +..+.+
T Consensus 84 ~dvDlilfvvd~~~~--~~~~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~ 138 (298)
T COG1159 84 KDVDLILFVVDADEG--WGPGDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIA 138 (298)
T ss_pred ccCcEEEEEEecccc--CCccHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHH
Confidence 899999999999763 33344555555544 4689999999999887665 334433
No 181
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.72 E-value=6.5e-17 Score=112.11 Aligned_cols=114 Identities=26% Similarity=0.373 Sum_probs=76.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCccc----cCCceeeEEEEEEE-cCEEEEEEEcCCCCCchh-----chHhhhcCCCEE
Q 031797 19 RILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEY-KNISFTVWDVGGQDKIRP-----LWRHYFQNTQGL 88 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~~~~----~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~~~~-----~~~~~~~~~~~i 88 (153)
||+++|++++||||+.+.+.....+. -.+|..++...+.. ....+++||+||+..+.. .....++++.++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 79999999999999999888764431 24677777666764 457999999999975533 457788999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcC--CCCCCceEEEEEeCCCcccc
Q 031797 89 IFVVDSNDRDRVVEARDELHRMLNE--DELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~~iivv~~K~Dl~~~ 133 (153)
|||+|+.+.+ +.+...++...+.. ...|++.+.++++|+|+..+
T Consensus 81 IyV~D~qs~~-~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~ 126 (232)
T PF04670_consen 81 IYVFDAQSDD-YDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSE 126 (232)
T ss_dssp EEEEETT-ST-CHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-H
T ss_pred EEEEEccccc-HHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCH
Confidence 9999997443 44444444443332 13388999999999999654
No 182
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.72 E-value=5.3e-17 Score=110.04 Aligned_cols=112 Identities=26% Similarity=0.244 Sum_probs=82.9
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCcc---------------------ccCCceeeEEEEEE--EcCEEEEEEEcCCCC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEIV---------------------TTIPTIGFNVETVE--YKNISFTVWDVGGQD 72 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~~---------------------~~~~t~~~~~~~~~--~~~~~~~i~d~~g~~ 72 (153)
+.++|+++|+.++|||||+.+++...-. ....|.......+. .....+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4679999999999999999999753210 01224455566666 788999999999999
Q ss_pred CchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 73 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
.|.......++.+|++++|+|+.+.-.. .....+.. +.. .++|+++++||+|+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~-~~~---~~~p~ivvlNK~D~~~ 136 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKI-LRE---LGIPIIVVLNKMDLIE 136 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHH-HHH---TT-SEEEEEETCTSSH
T ss_pred ceeecccceecccccceeeeeccccccc-cccccccc-ccc---cccceEEeeeeccchh
Confidence 9988888889999999999999754222 22222333 333 4688999999999983
No 183
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.72 E-value=1.5e-16 Score=108.21 Aligned_cols=121 Identities=19% Similarity=0.237 Sum_probs=76.7
Q ss_pred HhhcccccccEEEEEcCCCCcHHHHHHHHhcCCcc-ccCCceeeEE-EEEEEcCEEEEEEEcCCCC----------Cchh
Q 031797 9 FSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEYKNISFTVWDVGGQD----------KIRP 76 (153)
Q Consensus 9 ~~~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~-~~~~t~~~~~-~~~~~~~~~~~i~d~~g~~----------~~~~ 76 (153)
+++.......+|+++|++|+|||||++++.+.++. ...++.+... ......+.++.+||+||.. .+..
T Consensus 16 ~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~ 95 (196)
T PRK00454 16 LEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQK 95 (196)
T ss_pred HhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHH
Confidence 35556667799999999999999999999987632 2233332211 1111124789999999953 2223
Q ss_pred chHhhhcC---CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 77 LWRHYFQN---TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 77 ~~~~~~~~---~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
....+++. ++++++|+|.+++.+... ..+...+.. .+.|+++++||+|+.+..
T Consensus 96 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~ 151 (196)
T PRK00454 96 LIEEYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKG 151 (196)
T ss_pred HHHHHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHH
Confidence 33344443 467888899876543322 222233332 468899999999997643
No 184
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=2.2e-17 Score=106.52 Aligned_cols=132 Identities=34% Similarity=0.639 Sum_probs=115.9
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEEC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~ 94 (153)
.+.-|+++.|--|+|||||++-+-.++.....||.-....+....+.+++-+|.+||..-+..|..++..+|++++.+|+
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda 97 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDA 97 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeeh
Confidence 56679999999999999999998888877788888888888889999999999999998899999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCCC
Q 031797 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 146 (153)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~~ 146 (153)
.+.+.+.+....+..++.-....++|+++.+||+|...+...+++.-.+++.
T Consensus 98 ~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~ 149 (193)
T KOG0077|consen 98 YDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLS 149 (193)
T ss_pred hhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHH
Confidence 9999998888877777765555789999999999999888777777666553
No 185
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.72 E-value=7.3e-17 Score=119.16 Aligned_cols=112 Identities=23% Similarity=0.296 Sum_probs=86.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCcc--cc--CCceeeEEEEEEEcCEEEEEEEcCCCCCc---------hhchHhhhcC
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIV--TT--IPTIGFNVETVEYKNISFTVWDVGGQDKI---------RPLWRHYFQN 84 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~--~~--~~t~~~~~~~~~~~~~~~~i~d~~g~~~~---------~~~~~~~~~~ 84 (153)
..|+++|.||||||||.||+.+.+.. .. --|.+..+....+.+.++.++||+|-+.. ..+....+.+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 57999999999999999999998754 33 34777788889999999999999996532 3335567789
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 85 ~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
||+++||+|+.. ........+...++. .+.|+++|.||+|....+
T Consensus 84 ADvilfvVD~~~--Git~~D~~ia~~Lr~---~~kpviLvvNK~D~~~~e 128 (444)
T COG1160 84 ADVILFVVDGRE--GITPADEEIAKILRR---SKKPVILVVNKIDNLKAE 128 (444)
T ss_pred CCEEEEEEeCCC--CCCHHHHHHHHHHHh---cCCCEEEEEEcccCchhh
Confidence 999999999954 334445555555554 569999999999987443
No 186
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.71 E-value=1.3e-16 Score=124.15 Aligned_cols=124 Identities=19% Similarity=0.238 Sum_probs=86.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCC-------ccc-cCC------ceeeE----EEEEEE-----cCEEEEEEEcCCCCC
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGE-------IVT-TIP------TIGFN----VETVEY-----KNISFTVWDVGGQDK 73 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~-------~~~-~~~------t~~~~----~~~~~~-----~~~~~~i~d~~g~~~ 73 (153)
..+++++|+.++|||||+++++... +.. ... +.++. ...+.+ ....+.+|||||+..
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4689999999999999999998642 111 111 11222 222322 237899999999999
Q ss_pred chhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC---CHHHHHHHhCC
Q 031797 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGL 145 (153)
Q Consensus 74 ~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~---~~~~~~~~~~~ 145 (153)
|...+..+++.+|++++|+|+++..+.+....++. ... .++|+++|+||+|+.+.. ...++++.+++
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~-~~~----~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~ 152 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYL-ALE----NDLEIIPVINKIDLPSADPERVKKEIEEVIGL 152 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHH-HHH----cCCCEEEEEECcCCCccCHHHHHHHHHHHhCC
Confidence 99888999999999999999987666655444433 222 367999999999997532 23455555554
No 187
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.71 E-value=1.9e-16 Score=120.15 Aligned_cols=119 Identities=25% Similarity=0.291 Sum_probs=81.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCcc--c-cCCceeeEEEEEEEcCEEEEEEEcCCCCC-------chhchHhhhcCCC
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGEIV--T-TIPTIGFNVETVEYKNISFTVWDVGGQDK-------IRPLWRHYFQNTQ 86 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~~~--~-~~~t~~~~~~~~~~~~~~~~i~d~~g~~~-------~~~~~~~~~~~~~ 86 (153)
...|+++|.+|+|||||++++.+.+.. . ...|.......+...+.++.+||+||... ........++.++
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhierad 238 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCA 238 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcC
Confidence 367999999999999999999886543 2 23455666777788888999999999532 1122344567899
Q ss_pred EEEEEEECCCc----ccHHHHHH---HHHHHHcCC-------CCCCceEEEEEeCCCccccCC
Q 031797 87 GLIFVVDSNDR----DRVVEARD---ELHRMLNED-------ELRDAVLLVFANKQDLPNAMN 135 (153)
Q Consensus 87 ~ii~v~d~~~~----~s~~~~~~---~~~~~~~~~-------~~~~~~iivv~~K~Dl~~~~~ 135 (153)
++++|+|+++. +.+..... .+..+.... ...+.|+++|+||+|+.+...
T Consensus 239 vLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e 301 (500)
T PRK12296 239 VLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE 301 (500)
T ss_pred EEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH
Confidence 99999999753 23333322 222221100 224689999999999976543
No 188
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.71 E-value=3.3e-16 Score=111.38 Aligned_cols=125 Identities=19% Similarity=0.213 Sum_probs=90.3
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcc--cc-CCceeeEEEEEEEcCEEEEEEEcCCCC--Cc------hhc-hHhhh
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEYKNISFTVWDVGGQD--KI------RPL-WRHYF 82 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~d~~g~~--~~------~~~-~~~~~ 82 (153)
+....++|+|.||||||||++.+.+.+.. ++ +.|.++..+.+.....+++++||||-- .. +.. ..+.-
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~ 245 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALR 245 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHH
Confidence 45689999999999999999999887643 33 457788889999999999999999931 11 111 12222
Q ss_pred cCCCEEEEEEECCCcc--cHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHH
Q 031797 83 QNTQGLIFVVDSNDRD--RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDK 142 (153)
Q Consensus 83 ~~~~~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~ 142 (153)
.=.++++|+||.+... +.+.....+..+-.. -+.|+++|+||+|..+....+++...
T Consensus 246 hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~ 304 (346)
T COG1084 246 HLAGVILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEAS 304 (346)
T ss_pred HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHH
Confidence 2358889999998544 445555555555433 23899999999999987766666544
No 189
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.70 E-value=1.9e-15 Score=94.75 Aligned_cols=103 Identities=21% Similarity=0.326 Sum_probs=71.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCcc--c--cCCceeeEEEEEEEcCEEEEEEEcCCCCCc---------hhchHhhhcCC
Q 031797 19 RILMVGLDAAGKTTILYKLKLGEIV--T--TIPTIGFNVETVEYKNISFTVWDVGGQDKI---------RPLWRHYFQNT 85 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~~~--~--~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~---------~~~~~~~~~~~ 85 (153)
+|+++|.+|+|||||+|++++.+.. . ...|....+..+...+..+.++|+||-..- .......+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 6899999999999999999986432 1 233445555667788999999999995432 11133344789
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeC
Q 031797 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 127 (153)
Q Consensus 86 ~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K 127 (153)
|++++|+|.+++ ..+....+.+.++ .+.|+++|+||
T Consensus 81 d~ii~vv~~~~~--~~~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNP--ITEDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSH--SHHHHHHHHHHHH----TTSEEEEEEES
T ss_pred CEEEEEEECCCC--CCHHHHHHHHHHh----cCCCEEEEEcC
Confidence 999999997762 1222233333332 57899999998
No 190
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.70 E-value=4.6e-16 Score=110.77 Aligned_cols=123 Identities=20% Similarity=0.172 Sum_probs=86.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC--Ccc------------c-------cCCceeeEEEEEEEcCEEEEEEEcCCCCCchhc
Q 031797 19 RILMVGLDAAGKTTILYKLKLG--EIV------------T-------TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~--~~~------------~-------~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 77 (153)
+|.++|++|+|||||+++++.. ... . ...|.......+.+++..+.++||||+..+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 5899999999999999999641 110 0 011333334566778999999999999888888
Q ss_pred hHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC---CHHHHHHHhCCC
Q 031797 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLH 146 (153)
Q Consensus 78 ~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~---~~~~~~~~~~~~ 146 (153)
+...++.+|++++|+|+.+.-.- .....+. .... .+.|+++++||+|+.+.. ...++.+.++..
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~-~t~~~~~-~~~~---~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~ 147 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEP-QTETVWR-QADR---YNVPRIAFVNKMDRTGADFFRVVEQIREKLGAN 147 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCH-HHHHHHH-HHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCC
Confidence 88899999999999999753222 1222222 2232 468999999999997542 356666666654
No 191
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.70 E-value=5.8e-16 Score=106.92 Aligned_cols=109 Identities=17% Similarity=0.143 Sum_probs=75.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCcccc------------------CCceeeE----EEEEE-----EcCEEEEEEEcCC
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVTT------------------IPTIGFN----VETVE-----YKNISFTVWDVGG 70 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~~------------------~~t~~~~----~~~~~-----~~~~~~~i~d~~g 70 (153)
.+|+++|+.++|||||+++++....... ....++. ...+. .....+.+||+||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 3689999999999999999976432110 0011111 11221 2347899999999
Q ss_pred CCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031797 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 71 ~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~ 131 (153)
+..|.......++.+|++++|+|+++..+... ..++..... .+.|+++++||+|+.
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence 99998888888999999999999986655432 223333222 358999999999975
No 192
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.70 E-value=2.9e-16 Score=122.10 Aligned_cols=109 Identities=21% Similarity=0.140 Sum_probs=81.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC---ccc-c--CCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGE---IVT-T--IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~---~~~-~--~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 91 (153)
+.|+++|+.++|||||++++.+.. +.+ . ..|.+..+..+..++..+.+||+||++.|...+...+.++|++++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 468999999999999999998743 221 1 2244444556677779999999999999988888888999999999
Q ss_pred EECCCc---ccHHHHHHHHHHHHcCCCCCCce-EEEEEeCCCccccC
Q 031797 92 VDSNDR---DRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAM 134 (153)
Q Consensus 92 ~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~-iivv~~K~Dl~~~~ 134 (153)
+|+++. ++.+.. ..+.. .++| +++++||+|+.+..
T Consensus 81 VDa~~G~~~qT~ehl-----~il~~---lgi~~iIVVlNK~Dlv~~~ 119 (581)
T TIGR00475 81 VDADEGVMTQTGEHL-----AVLDL---LGIPHTIVVITKADRVNEE 119 (581)
T ss_pred EECCCCCcHHHHHHH-----HHHHH---cCCCeEEEEEECCCCCCHH
Confidence 999862 232222 12222 3566 99999999997654
No 193
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.70 E-value=6.7e-16 Score=100.73 Aligned_cols=113 Identities=26% Similarity=0.258 Sum_probs=78.5
Q ss_pred EEcCCCCcHHHHHHHHhcCCccc--c--CCceeeEEEEEEEc-CEEEEEEEcCCCCCchh-------chHhhhcCCCEEE
Q 031797 22 MVGLDAAGKTTILYKLKLGEIVT--T--IPTIGFNVETVEYK-NISFTVWDVGGQDKIRP-------LWRHYFQNTQGLI 89 (153)
Q Consensus 22 i~G~~~~GKtsli~~~~~~~~~~--~--~~t~~~~~~~~~~~-~~~~~i~d~~g~~~~~~-------~~~~~~~~~~~ii 89 (153)
++|++|+|||||++++.+..... . ..+........... ...+.+||+||...+.. .....++.+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 58999999999999998865441 1 11223333333433 67999999999766532 3345778999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHH
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI 139 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~ 139 (153)
+|+|.++..+..... +.... .. .+.|+++++||+|+.........
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~~-~~---~~~~~ivv~nK~D~~~~~~~~~~ 125 (163)
T cd00880 81 FVVDADLRADEEEEK-LLELL-RE---RGKPVLLVLNKIDLLPEEEEEEL 125 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHHH-Hh---cCCeEEEEEEccccCChhhHHHH
Confidence 999999877665554 22222 22 57899999999999876554443
No 194
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.69 E-value=5.9e-16 Score=123.17 Aligned_cols=113 Identities=20% Similarity=0.262 Sum_probs=81.0
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCcc--ccCC--ceeeEEEEEEEcCEEEEEEEcCCCCC--------chhchHhhhc
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDK--------IRPLWRHYFQ 83 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~~~~ 83 (153)
...+|+++|.+|+|||||+|++.+.+.. ...+ |...........+..+.+|||||.+. +......+++
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 353 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVS 353 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHH
Confidence 3478999999999999999999987643 2222 22333344556778999999999753 2333455678
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 84 ~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
.+|++++|+|+++. +......+...+.. .+.|+++|+||+|+...
T Consensus 354 ~aD~iL~VvDa~~~--~~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~ 398 (712)
T PRK09518 354 LADAVVFVVDGQVG--LTSTDERIVRMLRR---AGKPVVLAVNKIDDQAS 398 (712)
T ss_pred hCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECcccccc
Confidence 99999999999753 33333444555544 57899999999998654
No 195
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.69 E-value=6.7e-16 Score=120.11 Aligned_cols=111 Identities=21% Similarity=0.244 Sum_probs=84.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC--Ccccc-----------------CCceeeEEEEEEEcCEEEEEEEcCCCCCchhch
Q 031797 18 MRILMVGLDAAGKTTILYKLKLG--EIVTT-----------------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~--~~~~~-----------------~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~ 78 (153)
.+|+++|+.++|||||+.+++.. .+... ..|.......+.+++.++.+||+||+..|....
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 48999999999999999999862 22111 123334445677889999999999999998888
Q ss_pred HhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 79 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
..+++.+|++++|+|+.+. .......+|..... .++|+++++||+|+.+.
T Consensus 82 ~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a 131 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPSA 131 (594)
T ss_pred HHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH----CCCCEEEEEECCCCCCc
Confidence 8999999999999999753 23344444444433 46899999999998654
No 196
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.69 E-value=6.2e-16 Score=115.01 Aligned_cols=117 Identities=21% Similarity=0.257 Sum_probs=80.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCcc-c--cCCceeeEEEEEEEcC-EEEEEEEcCCCCC-------chhchHhhhcCCCE
Q 031797 19 RILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKN-ISFTVWDVGGQDK-------IRPLWRHYFQNTQG 87 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~~~-~--~~~t~~~~~~~~~~~~-~~~~i~d~~g~~~-------~~~~~~~~~~~~~~ 87 (153)
.|.++|.+|||||||+|++.+.+.. . +..|.......++..+ ..+.++|+||... ........++.+++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radv 240 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRV 240 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCE
Confidence 7999999999999999999986542 1 2345555666666654 4699999999643 12223446789999
Q ss_pred EEEEEECC---CcccHHHHHHHHHHHHcC-CCCCCceEEEEEeCCCccccCC
Q 031797 88 LIFVVDSN---DRDRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAMN 135 (153)
Q Consensus 88 ii~v~d~~---~~~s~~~~~~~~~~~~~~-~~~~~~~iivv~~K~Dl~~~~~ 135 (153)
+++|+|++ +.+.+.....+...+... ....+.|+++|+||+|+.+...
T Consensus 241 lL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e 292 (390)
T PRK12298 241 LLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE 292 (390)
T ss_pred EEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH
Confidence 99999987 344555444444433321 1124689999999999976543
No 197
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.69 E-value=2.9e-16 Score=107.68 Aligned_cols=113 Identities=17% Similarity=0.148 Sum_probs=72.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCccc------cCCceeeEEEEEEEc---------------------------C----
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVT------TIPTIGFNVETVEYK---------------------------N---- 60 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~------~~~t~~~~~~~~~~~---------------------------~---- 60 (153)
++|.++|+.|+|||||+..+.+..... ...+....+..+.+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 478999999999999999986542110 011111111111110 2
Q ss_pred --EEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 61 --ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 61 --~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
..+.+||+||++.|...+...+..+|++++|+|++++.........+..+ ... ...|+++++||+|+.+.
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~-~~~--~~~~iiivvNK~Dl~~~ 152 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL-EIM--GLKHIIIVQNKIDLVKE 152 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH-HHc--CCCcEEEEEEchhccCH
Confidence 68999999999988877778888999999999998632111112222222 111 12479999999999764
No 198
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.69 E-value=4.5e-16 Score=123.83 Aligned_cols=120 Identities=18% Similarity=0.245 Sum_probs=84.0
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCcc--ccCC--ceeeEEEEEEEcCEEEEEEEcCCCCC----------chhc-hHh
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDK----------IRPL-WRH 80 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~d~~g~~~----------~~~~-~~~ 80 (153)
...+|+++|.+|+|||||++++++.+.. ...+ |.+.....+...+..+.+|||||..+ +... ...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 4589999999999999999999988642 3222 33444455667788899999999532 1111 123
Q ss_pred hhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHH
Q 031797 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEIT 140 (153)
Q Consensus 81 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~ 140 (153)
+++.+|++++|+|+++..+..... .+..... .+.|+++|+||+|+.+....+.+.
T Consensus 529 ~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~ 583 (712)
T PRK09518 529 AIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLE 583 (712)
T ss_pred HhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHH
Confidence 468899999999999877766543 2333322 468999999999997654433333
No 199
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.69 E-value=1.1e-15 Score=115.75 Aligned_cols=121 Identities=18% Similarity=0.239 Sum_probs=82.3
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcc--ccCC--ceeeEEEEEEEcCEEEEEEEcCCCCCchh-----------chH
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP-----------LWR 79 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~d~~g~~~~~~-----------~~~ 79 (153)
...++|+++|.+|+|||||++++++.... ...+ |.......+...+..+.+||+||...... ...
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 35699999999999999999999976532 2222 22333344556788899999999643211 122
Q ss_pred hhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHH
Q 031797 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEIT 140 (153)
Q Consensus 80 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~ 140 (153)
.+++.+|++++|+|+++..+.... .+...+.. .+.|+++++||+|+.+.....++.
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~--~i~~~~~~---~~~~~ivv~NK~Dl~~~~~~~~~~ 306 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDL--RIAGLALE---AGRALVIVVNKWDLVDEKTMEEFK 306 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHH---cCCcEEEEEECccCCCHHHHHHHH
Confidence 467889999999999876555433 22233222 368999999999998544333333
No 200
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.69 E-value=1.2e-15 Score=121.48 Aligned_cols=126 Identities=21% Similarity=0.233 Sum_probs=89.1
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCcc-ccC--CceeeEEEEEEEcCEEEEEEEcCCCCCchhc----------hHhh-
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTI--PTIGFNVETVEYKNISFTVWDVGGQDKIRPL----------WRHY- 81 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~~-~~~--~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~----------~~~~- 81 (153)
+.++|+++|++|+|||||+|++.+.+.. .+. .|.+.....+...+.++.++|+||..++... ...+
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 3578999999999999999999886543 222 3555555667778889999999998765421 1122
Q ss_pred -hcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC----CHHHHHHHhCCCcc
Q 031797 82 -FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSL 148 (153)
Q Consensus 82 -~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~----~~~~~~~~~~~~~~ 148 (153)
.+.+|++++|+|+++.++. ..++.. +.+ .+.|+++++||+|+.+.. +.++++++++++.+
T Consensus 82 ~~~~aD~vI~VvDat~ler~---l~l~~q-l~e---~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVv 146 (772)
T PRK09554 82 LSGDADLLINVVDASNLERN---LYLTLQ-LLE---LGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVI 146 (772)
T ss_pred hccCCCEEEEEecCCcchhh---HHHHHH-HHH---cCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEE
Confidence 2479999999999875432 223333 233 468999999999986432 35667778887654
No 201
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=4e-16 Score=104.69 Aligned_cols=129 Identities=29% Similarity=0.419 Sum_probs=101.9
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhc---CCCEEEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ---NTQGLIFV 91 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~---~~~~ii~v 91 (153)
++.-.|+++|+.++|||+|.-.+..+......++...+...+.......++.|.|||.+.+.....++. .+.+++||
T Consensus 36 s~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFV 115 (238)
T KOG0090|consen 36 SKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFV 115 (238)
T ss_pred ccCCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEE
Confidence 445789999999999999999998887666677777777778887888999999999998777666666 78999999
Q ss_pred EECCC-cccHHHHHHHHHHHHcCC--CCCCceEEEEEeCCCccccCCHHHHHHHh
Q 031797 92 VDSND-RDRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAMNAAEITDKL 143 (153)
Q Consensus 92 ~d~~~-~~s~~~~~~~~~~~~~~~--~~~~~~iivv~~K~Dl~~~~~~~~~~~~~ 143 (153)
+|... +....+..+.+..++... ....+|+++++||.|+..+...+.+++.+
T Consensus 116 VDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~L 170 (238)
T KOG0090|consen 116 VDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQL 170 (238)
T ss_pred EeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHH
Confidence 99863 334556666666666543 45789999999999999887766665554
No 202
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.68 E-value=4.2e-16 Score=117.64 Aligned_cols=117 Identities=21% Similarity=0.202 Sum_probs=81.4
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCC--cc--------------------------------ccCCceeeEEEEEEEc
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGE--IV--------------------------------TTIPTIGFNVETVEYK 59 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~--~~--------------------------------~~~~t~~~~~~~~~~~ 59 (153)
....++|+++|+.++|||||+++++... +. ..-.|.+.....+..+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 3457999999999999999999997421 10 0112444455566778
Q ss_pred CEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 60 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
+..+.+||+||++.|.......++.+|++++|+|+++..++.........+.... ...|+++++||+|+.+
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVN 153 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEcccccc
Confidence 8999999999998887666666789999999999986322222222222222221 1246999999999975
No 203
>PRK10218 GTP-binding protein; Provisional
Probab=99.68 E-value=1.7e-15 Score=117.86 Aligned_cols=114 Identities=20% Similarity=0.246 Sum_probs=83.8
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhc--CCcccc-------------CCcee----eEEEEEEEcCEEEEEEEcCCCCCch
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKL--GEIVTT-------------IPTIG----FNVETVEYKNISFTVWDVGGQDKIR 75 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~--~~~~~~-------------~~t~~----~~~~~~~~~~~~~~i~d~~g~~~~~ 75 (153)
.+..+|+++|+.++|||||+++++. +.+... ..+.+ .....+.+++.++.+||+||+..|.
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~ 82 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG 82 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH
Confidence 3467999999999999999999986 222211 11222 2234566788999999999999999
Q ss_pred hchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 76 ~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
..+..+++.+|++++|+|+++.. .......+..... .++|+++++||+|+.+.
T Consensus 83 ~~v~~~l~~aDg~ILVVDa~~G~-~~qt~~~l~~a~~----~gip~IVviNKiD~~~a 135 (607)
T PRK10218 83 GEVERVMSMVDSVLLVVDAFDGP-MPQTRFVTKKAFA----YGLKPIVVINKVDRPGA 135 (607)
T ss_pred HHHHHHHHhCCEEEEEEecccCc-cHHHHHHHHHHHH----cCCCEEEEEECcCCCCC
Confidence 88999999999999999997532 2223333333322 46889999999998754
No 204
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.68 E-value=8.9e-16 Score=118.00 Aligned_cols=128 Identities=22% Similarity=0.283 Sum_probs=90.6
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhc--CCcc----------------cc-------CCceeeEEEEEEEcCEEEEEEEcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKL--GEIV----------------TT-------IPTIGFNVETVEYKNISFTVWDVG 69 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~--~~~~----------------~~-------~~t~~~~~~~~~~~~~~~~i~d~~ 69 (153)
.+..+|+++|+.++|||||+++++. +... .. ..+.......+.+++..+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 4578999999999999999999963 1110 00 011222334567788999999999
Q ss_pred CCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCC---HHHHHHHhCCC
Q 031797 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLH 146 (153)
Q Consensus 70 g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~---~~~~~~~~~~~ 146 (153)
|+..|.......++.+|++++|+|+++.-.. .....| ..... .++|+++++||+|+..... .+++.+.++.+
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~-~~~~~---~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~~ 162 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLM-EVCRL---RDTPIFTFINKLDRDGREPLELLDEIEEVLGIA 162 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHH-HHHHh---cCCCEEEEEECCcccccCHHHHHHHHHHHhCCC
Confidence 9999887777788999999999999764222 222333 33332 5789999999999876543 46777777765
Q ss_pred c
Q 031797 147 S 147 (153)
Q Consensus 147 ~ 147 (153)
.
T Consensus 163 ~ 163 (526)
T PRK00741 163 C 163 (526)
T ss_pred C
Confidence 3
No 205
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.68 E-value=1.2e-15 Score=120.49 Aligned_cols=115 Identities=20% Similarity=0.264 Sum_probs=82.8
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCcccc-C--CceeeEEEEEEE----cCEEEEEEEcCCCCCchhchHhhhcCCC
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-I--PTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~--~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 86 (153)
..+...|+++|+.++|||||++++.+..+... . .|..+....+.. .+..+.+||+||++.|...+...++.+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 45778999999999999999999988765432 1 122222222222 3589999999999999999888999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
++++|+|+++....+. ...+... . ..++|+++++||+|+.+.
T Consensus 321 iaILVVDA~dGv~~QT-~E~I~~~-k---~~~iPiIVViNKiDl~~~ 362 (742)
T CHL00189 321 IAILIIAADDGVKPQT-IEAINYI-Q---AANVPIIVAINKIDKANA 362 (742)
T ss_pred EEEEEEECcCCCChhh-HHHHHHH-H---hcCceEEEEEECCCcccc
Confidence 9999999876322221 1222222 2 256899999999999764
No 206
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.68 E-value=1.5e-15 Score=108.31 Aligned_cols=123 Identities=21% Similarity=0.228 Sum_probs=85.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCcc--c-------------------cCCceeeEEEEEEEcCEEEEEEEcCCCCCchhc
Q 031797 19 RILMVGLDAAGKTTILYKLKLGEIV--T-------------------TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~~~--~-------------------~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 77 (153)
+|+++|++|+|||||+++++...-. . ...+.......+.+.+.++.+||+||+..+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 5899999999999999999753210 0 011222333456678899999999999888777
Q ss_pred hHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC---CHHHHHHHhCCC
Q 031797 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLH 146 (153)
Q Consensus 78 ~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~---~~~~~~~~~~~~ 146 (153)
....++.+|++++|+|+++..... ....|.. +.. .+.|+++++||+|..... ...++++.++.+
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~-~~~~~~~-~~~---~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~~ 147 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVG-TEKLWEF-ADE---AGIPRIIFINKMDRERADFDKTLAALQEAFGRP 147 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHH-HHHHHHH-HHH---cCCCEEEEEECCccCCCCHHHHHHHHHHHhCCC
Confidence 888899999999999998654442 2222332 222 468999999999988652 344555555543
No 207
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.68 E-value=3.4e-16 Score=103.34 Aligned_cols=112 Identities=23% Similarity=0.245 Sum_probs=71.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcCEEEEEEEcCCCCCc----hhchHhhhcCCCEEEEEEEC
Q 031797 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI----RPLWRHYFQNTQGLIFVVDS 94 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~----~~~~~~~~~~~~~ii~v~d~ 94 (153)
+|+++|.+|+|||||++++.+... ....+.+. .+... .+||+||.... .......++++|++++|+|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~-~~~~~~~v-----~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~ 74 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT-LARKTQAV-----EFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGA 74 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc-cCccceEE-----EECCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeC
Confidence 799999999999999999876431 11122222 22111 26999997322 22223346899999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC--CHHHHHHHhCC
Q 031797 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGL 145 (153)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~--~~~~~~~~~~~ 145 (153)
++..++.. .++... ..+.|+++++||+|+.+.. ...++.+++++
T Consensus 75 ~~~~s~~~--~~~~~~-----~~~~~ii~v~nK~Dl~~~~~~~~~~~~~~~~~ 120 (158)
T PRK15467 75 NDPESRLP--AGLLDI-----GVSKRQIAVISKTDMPDADVAATRKLLLETGF 120 (158)
T ss_pred CCcccccC--HHHHhc-----cCCCCeEEEEEccccCcccHHHHHHHHHHcCC
Confidence 98766532 233322 1357899999999996532 23344445554
No 208
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.68 E-value=1.2e-15 Score=105.65 Aligned_cols=109 Identities=18% Similarity=0.148 Sum_probs=76.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC--cccc-----------------CCceeeEEEEEEE----------cCEEEEEEEc
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGE--IVTT-----------------IPTIGFNVETVEY----------KNISFTVWDV 68 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~--~~~~-----------------~~t~~~~~~~~~~----------~~~~~~i~d~ 68 (153)
.+|+++|+.++|||||+.+++... .... ..|.......+.+ .+..+.+||+
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 379999999999999999997532 1000 0011111111222 2678999999
Q ss_pred CCCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031797 69 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 69 ~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~ 131 (153)
||+..|.......++.+|++++|+|+.+...... ...+..... .++|+++++||+|+.
T Consensus 81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CCccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence 9999999888999999999999999986544432 233333322 357899999999986
No 209
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.67 E-value=6.4e-16 Score=119.88 Aligned_cols=109 Identities=21% Similarity=0.205 Sum_probs=77.2
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCccccCC-----ceeeEEEEEE----------------EcCEEEEEEEcCCCCCc
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIGFNVETVE----------------YKNISFTVWDVGGQDKI 74 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~-----t~~~~~~~~~----------------~~~~~~~i~d~~g~~~~ 74 (153)
+.--|+++|++++|||||++++.+..+....+ +.+....... .+...+.+||+||++.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 34569999999999999999999876643221 2222221111 11124889999999999
Q ss_pred hhchHhhhcCCCEEEEEEECCC---cccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 75 RPLWRHYFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 75 ~~~~~~~~~~~~~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
...+..+++.+|++++|+|+++ ++++... ..+.. .++|+++++||+|+.+
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i-----~~l~~---~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEAL-----NILRM---YKTPFVVAANKIDRIP 135 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHH-----HHHHH---cCCCEEEEEECCCccc
Confidence 9988889999999999999986 3333222 12222 3689999999999964
No 210
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.67 E-value=5.4e-16 Score=117.09 Aligned_cols=117 Identities=21% Similarity=0.148 Sum_probs=81.1
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcC--Cccc--------------------------------cCCceeeEEEEEEEc
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLG--EIVT--------------------------------TIPTIGFNVETVEYK 59 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~--~~~~--------------------------------~~~t~~~~~~~~~~~ 59 (153)
....++|+++|+.++|||||+.+++.. .+.. ...|.+.....+...
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 355799999999999999999999752 1110 011333444556667
Q ss_pred CEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHH-HHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 60 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
+..+.+||+||++.|.......++.+|++++|+|+++.++...... ....+.... ...|+++++||+|+.+
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVN 155 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccC
Confidence 8899999999999887766667889999999999987643311111 111122221 2357999999999974
No 211
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.67 E-value=1.1e-15 Score=105.21 Aligned_cols=110 Identities=21% Similarity=0.168 Sum_probs=74.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC--ccc--------------------------------cCCceeeEEEEEEEcCEEEE
Q 031797 19 RILMVGLDAAGKTTILYKLKLGE--IVT--------------------------------TIPTIGFNVETVEYKNISFT 64 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~--~~~--------------------------------~~~t~~~~~~~~~~~~~~~~ 64 (153)
+|+++|++|+|||||+++++... +.. ...|.......+...+.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 58999999999999999997532 110 11133333445566788999
Q ss_pred EEEcCCCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 65 i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
+||+||+..|.......++.+|++++|+|+++... ........++... ...++++|+||+|+.+
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~--~~~~~~~~~~~~~--~~~~iIvviNK~D~~~ 144 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVL--EQTRRHSYILSLL--GIRHVVVAVNKMDLVD 144 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCcc--HhHHHHHHHHHHc--CCCcEEEEEEchhccc
Confidence 99999998886666677899999999999976421 1111122222221 1245788999999975
No 212
>PRK13351 elongation factor G; Reviewed
Probab=99.67 E-value=1.4e-15 Score=120.71 Aligned_cols=129 Identities=19% Similarity=0.163 Sum_probs=94.4
Q ss_pred ccccccEEEEEcCCCCcHHHHHHHHhcCC--c-----------c--------ccCCceeeEEEEEEEcCEEEEEEEcCCC
Q 031797 13 FAKKEMRILMVGLDAAGKTTILYKLKLGE--I-----------V--------TTIPTIGFNVETVEYKNISFTVWDVGGQ 71 (153)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~--~-----------~--------~~~~t~~~~~~~~~~~~~~~~i~d~~g~ 71 (153)
...+..+|+++|+.++|||||+++++... . . ....|.......+.+.+..+.+||+||+
T Consensus 4 ~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~ 83 (687)
T PRK13351 4 PLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGH 83 (687)
T ss_pred ccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCc
Confidence 34567899999999999999999997521 0 0 0122444445667788999999999999
Q ss_pred CCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC---CHHHHHHHhCCC
Q 031797 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLH 146 (153)
Q Consensus 72 ~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~---~~~~~~~~~~~~ 146 (153)
..|...+..+++.+|++++|+|+++....... ..|.. +.. .++|+++++||+|+.+.. ..+++.+.++..
T Consensus 84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~~~-~~~---~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~ 156 (687)
T PRK13351 84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVWRQ-ADR---YGIPRLIFINKMDRVGADLFKVLEDIEERFGKR 156 (687)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHH-HHh---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCC
Confidence 99988888899999999999999876555432 33333 222 468999999999998653 345555555553
No 213
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.67 E-value=9.5e-16 Score=104.38 Aligned_cols=111 Identities=20% Similarity=0.163 Sum_probs=77.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCC--------c----c-------ccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhc
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGE--------I----V-------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~--------~----~-------~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 77 (153)
+++|.++|+.++|||||++++++.. . . ....|.......+..++..+.++|+||+..|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 5789999999999999999997531 0 0 0111333333445556788999999999888777
Q ss_pred hHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCce-EEEEEeCCCccc
Q 031797 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPN 132 (153)
Q Consensus 78 ~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~~K~Dl~~ 132 (153)
....+..+|++++|+|+.+. .......+...+.. .+.| +++++||+|+.+
T Consensus 82 ~~~~~~~~D~~ilVvda~~g--~~~~~~~~~~~~~~---~~~~~iIvviNK~D~~~ 132 (195)
T cd01884 82 MITGAAQMDGAILVVSATDG--PMPQTREHLLLARQ---VGVPYIVVFLNKADMVD 132 (195)
T ss_pred HHHHhhhCCEEEEEEECCCC--CcHHHHHHHHHHHH---cCCCcEEEEEeCCCCCC
Confidence 77788999999999999753 22222222333333 3455 789999999964
No 214
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.66 E-value=3.4e-15 Score=116.50 Aligned_cols=126 Identities=21% Similarity=0.225 Sum_probs=86.0
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCC--cc---------cc-------CCceeeEEEEEEE-----cCEEEEEEEcCCC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGE--IV---------TT-------IPTIGFNVETVEY-----KNISFTVWDVGGQ 71 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~--~~---------~~-------~~t~~~~~~~~~~-----~~~~~~i~d~~g~ 71 (153)
.+..+++++|+.++|||||+.+++... +. .. ..|.......+.+ .+..+.+|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 345799999999999999999997631 11 00 0112222223333 3578999999999
Q ss_pred CCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCC---HHHHHHHhCC
Q 031797 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGL 145 (153)
Q Consensus 72 ~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~---~~~~~~~~~~ 145 (153)
..|...+..+++.+|++++|+|+++.........+ ..... .++|+++|+||+|+.+... ..++.+.+++
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~-~~~~~----~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~ 156 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANV-YLALE----NDLEIIPVLNKIDLPAADPERVKQEIEDVIGI 156 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHH-HHHHH----CCCCEEEEEECCCCCcccHHHHHHHHHHHhCC
Confidence 99988888999999999999999875444433332 22222 3689999999999965432 2455555554
No 215
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.66 E-value=2.9e-15 Score=104.68 Aligned_cols=80 Identities=21% Similarity=0.293 Sum_probs=61.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCcc-c--cCCceeeEEEEEEEcCEEEEEEEcCCCCCch-------hchHhhhcCCCEE
Q 031797 19 RILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNISFTVWDVGGQDKIR-------PLWRHYFQNTQGL 88 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~~~-~--~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~-------~~~~~~~~~~~~i 88 (153)
+++++|++|+|||||++++.+.... . ...|.......+...+..+++||+||..... ......++.+|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 6899999999999999999987532 1 1334455566777889999999999974332 2334578999999
Q ss_pred EEEEECCCcc
Q 031797 89 IFVVDSNDRD 98 (153)
Q Consensus 89 i~v~d~~~~~ 98 (153)
++|+|++++.
T Consensus 82 l~V~D~t~~~ 91 (233)
T cd01896 82 LMVLDATKPE 91 (233)
T ss_pred EEEecCCcch
Confidence 9999998654
No 216
>PTZ00099 rab6; Provisional
Probab=99.65 E-value=1.4e-15 Score=102.03 Aligned_cols=87 Identities=25% Similarity=0.487 Sum_probs=71.9
Q ss_pred cCCceeeEEEE--EEE--cCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCce
Q 031797 45 TIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120 (153)
Q Consensus 45 ~~~t~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ 120 (153)
+.+|.+..+.. +.. ....+.+||++|++.+...+..+++++|++++|||++++.+|.....|+..+.... .+.+|
T Consensus 9 ~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~-~~~~p 87 (176)
T PTZ00099 9 YQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER-GKDVI 87 (176)
T ss_pred CCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCe
Confidence 46777766532 333 45789999999999999999999999999999999999999999988877776543 35789
Q ss_pred EEEEEeCCCccc
Q 031797 121 LLVFANKQDLPN 132 (153)
Q Consensus 121 iivv~~K~Dl~~ 132 (153)
+++|+||+|+.+
T Consensus 88 iilVgNK~DL~~ 99 (176)
T PTZ00099 88 IALVGNKTDLGD 99 (176)
T ss_pred EEEEEECccccc
Confidence 999999999964
No 217
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.65 E-value=1.3e-15 Score=114.99 Aligned_cols=122 Identities=18% Similarity=0.265 Sum_probs=96.4
Q ss_pred ccccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEE---EEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV---ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~---~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
...+.++|+++|..|+||||||-++....+++..|..-... ..+.-......+.|++..+.-+......++++|+++
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~ 84 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC 84 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence 44678999999999999999999999988876544222111 222223455889999877665555566789999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCC--CCCceEEEEEeCCCccccC
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~iivv~~K~Dl~~~~ 134 (153)
++++++++++++.+..+|..++++.. ..++|||+||||+|.....
T Consensus 85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~ 131 (625)
T KOG1707|consen 85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNE 131 (625)
T ss_pred EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccc
Confidence 99999999999999999999998754 3579999999999997543
No 218
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.64 E-value=3.4e-15 Score=116.37 Aligned_cols=118 Identities=18% Similarity=0.280 Sum_probs=82.3
Q ss_pred cCCCCcHHHHHHHHhcCCcc-ccCC--ceeeEEEEEEEcCEEEEEEEcCCCCCchhc------hHhhh--cCCCEEEEEE
Q 031797 24 GLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL------WRHYF--QNTQGLIFVV 92 (153)
Q Consensus 24 G~~~~GKtsli~~~~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~------~~~~~--~~~~~ii~v~ 92 (153)
|++|+|||||+|++.+.... .+.+ |.+.....+..++..+.+||+||+.++... ...++ +++|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 89999999999999987653 3333 333444556677888999999998776443 22232 4789999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC----CHHHHHHHhCCCcc
Q 031797 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSL 148 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~----~~~~~~~~~~~~~~ 148 (153)
|.++.+.. ........ + .+.|+++++||+|+.++. +.++++++++++.+
T Consensus 81 Dat~ler~---l~l~~ql~-~---~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv 133 (591)
T TIGR00437 81 DASNLERN---LYLTLQLL-E---LGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVV 133 (591)
T ss_pred cCCcchhh---HHHHHHHH-h---cCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEE
Confidence 99864332 22222222 2 468999999999996533 35677788887654
No 219
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.64 E-value=6.1e-15 Score=113.45 Aligned_cols=127 Identities=23% Similarity=0.268 Sum_probs=88.5
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhc--CCccc----------------c-------CCceeeEEEEEEEcCEEEEEEEcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKL--GEIVT----------------T-------IPTIGFNVETVEYKNISFTVWDVG 69 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~--~~~~~----------------~-------~~t~~~~~~~~~~~~~~~~i~d~~ 69 (153)
.+..+++++|++++|||||+++++. +.+.. . ..+.......+.+++..+.+||+|
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 5678999999999999999999853 11110 0 011222334567788999999999
Q ss_pred CCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC---CHHHHHHHhCCC
Q 031797 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLH 146 (153)
Q Consensus 70 g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~---~~~~~~~~~~~~ 146 (153)
|+..|.......++.+|++++|+|+++. +......+...... .+.|+++++||+|+.... ..+++.+.++..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~g--v~~~t~~l~~~~~~---~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~~ 163 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKG--VETRTRKLMEVTRL---RDTPIFTFMNKLDRDIRDPLELLDEVENELKIN 163 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECccccCCCHHHHHHHHHHHhCCC
Confidence 9988877667788999999999999753 22222333333333 468999999999986432 345666666654
No 220
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.64 E-value=6.5e-15 Score=109.23 Aligned_cols=116 Identities=16% Similarity=0.249 Sum_probs=87.3
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcc--cc--CCceeeEEEEEEEcCEEEEEEEcCCCCCchhc--------hHhhh
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TT--IPTIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYF 82 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~--~~--~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~~ 82 (153)
...++++++|.||+|||||+|.+++.+.. +. -.|.+.-...++..+.++.+.||.|-.+-... ....+
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence 56799999999999999999999987643 43 44777888889999999999999996543222 23457
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCH
Q 031797 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA 136 (153)
Q Consensus 83 ~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~ 136 (153)
+.+|.+++|+|.+.+.+-..... ... ...+.|+++|.||.|+......
T Consensus 295 ~~ADlvL~v~D~~~~~~~~d~~~--~~~----~~~~~~~i~v~NK~DL~~~~~~ 342 (454)
T COG0486 295 EEADLVLFVLDASQPLDKEDLAL--IEL----LPKKKPIIVVLNKADLVSKIEL 342 (454)
T ss_pred HhCCEEEEEEeCCCCCchhhHHH--HHh----cccCCCEEEEEechhccccccc
Confidence 89999999999987522222222 221 1256899999999999876543
No 221
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.64 E-value=2.5e-15 Score=104.19 Aligned_cols=111 Identities=21% Similarity=0.195 Sum_probs=75.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC--c-------------------------cc-------cCCceeeEEEEEEEcCEEEE
Q 031797 19 RILMVGLDAAGKTTILYKLKLGE--I-------------------------VT-------TIPTIGFNVETVEYKNISFT 64 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~--~-------------------------~~-------~~~t~~~~~~~~~~~~~~~~ 64 (153)
+|+++|+.++|||||+.+++... . .. ...|.......+..++.++.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 58999999999999999996320 0 00 01133334455677889999
Q ss_pred EEEcCCCCCchhchHhhhcCCCEEEEEEECCCccc------HHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR------VVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 65 i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
+||+||+..|...+...++.+|++++|+|+++... .......+. ..... ...|+++++||+|+..
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~iiivvNK~Dl~~ 151 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LARTL--GVKQLIVAVNKMDDVT 151 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHHc--CCCeEEEEEEcccccc
Confidence 99999998887767777888999999999986421 111222222 22221 2368999999999973
No 222
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.64 E-value=7.5e-15 Score=116.57 Aligned_cols=128 Identities=20% Similarity=0.157 Sum_probs=91.6
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCC--cc-------------------ccCCceeeEEEEEEEcCEEEEEEEcCCCC
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGE--IV-------------------TTIPTIGFNVETVEYKNISFTVWDVGGQD 72 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~--~~-------------------~~~~t~~~~~~~~~~~~~~~~i~d~~g~~ 72 (153)
..+..+|.++|+.++|||||+++++... .. ....|.......+.+++..+.+|||||+.
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 86 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHV 86 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCc
Confidence 3456799999999999999999997421 10 01123334455677789999999999999
Q ss_pred CchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC---CHHHHHHHhCCC
Q 031797 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLH 146 (153)
Q Consensus 73 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~---~~~~~~~~~~~~ 146 (153)
.+.......++.+|++++|+|+.+...... ...+. .+.. .++|+++++||+|+.+.. ..+++.+.++..
T Consensus 87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~-~~~~---~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~ 158 (689)
T TIGR00484 87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQS-ETVWR-QANR---YEVPRIAFVNKMDKTGANFLRVVNQIKQRLGAN 158 (689)
T ss_pred chhHHHHHHHHHhCEEEEEEeCCCCCChhH-HHHHH-HHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCC
Confidence 887778888999999999999976433322 22232 2333 468999999999998643 355666666553
No 223
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.64 E-value=3.9e-15 Score=99.69 Aligned_cols=133 Identities=18% Similarity=0.255 Sum_probs=86.4
Q ss_pred hhcccccccEEEEEcCCCCcHHHHHHHHhcCC-ccccCCceeeEEEE--EEEcCEEEEEEEcCCC----------CCchh
Q 031797 10 SKLFAKKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVET--VEYKNISFTVWDVGGQ----------DKIRP 76 (153)
Q Consensus 10 ~~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~-~~~~~~t~~~~~~~--~~~~~~~~~i~d~~g~----------~~~~~ 76 (153)
.+.+.....-|+++|.+|||||||||++++.+ ......|.|..... ++.. ..+.+.|.||- +.+..
T Consensus 17 ~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~-~~~~lVDlPGYGyAkv~k~~~e~w~~ 95 (200)
T COG0218 17 KQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD-DELRLVDLPGYGYAKVPKEVKEKWKK 95 (200)
T ss_pred hhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec-CcEEEEeCCCcccccCCHHHHHHHHH
Confidence 34455677899999999999999999999976 33334444433221 2222 23889999993 22333
Q ss_pred chHhhhc---CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCC----HHHHHHHhCCCcc
Q 031797 77 LWRHYFQ---NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSL 148 (153)
Q Consensus 77 ~~~~~~~---~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~----~~~~~~~~~~~~~ 148 (153)
....|++ ...++++++|+... .........+++.. .++|+++++||+|.....+ ...+++.+.++..
T Consensus 96 ~i~~YL~~R~~L~~vvlliD~r~~--~~~~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~ 169 (200)
T COG0218 96 LIEEYLEKRANLKGVVLLIDARHP--PKDLDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPP 169 (200)
T ss_pred HHHHHHhhchhheEEEEEEECCCC--CcHHHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCC
Confidence 3444444 35778889998644 33334444455444 5799999999999987543 3566666665543
No 224
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.63 E-value=3.9e-15 Score=106.37 Aligned_cols=112 Identities=15% Similarity=0.235 Sum_probs=70.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCcccc-----------CCceeeEEEE--EEEcC--EEEEEEEcCCCCCchh-----
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-----------IPTIGFNVET--VEYKN--ISFTVWDVGGQDKIRP----- 76 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~-----------~~t~~~~~~~--~~~~~--~~~~i~d~~g~~~~~~----- 76 (153)
.++|+++|++|+|||||+|++++..+... ..|....... +...+ .++.+|||||......
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 58999999999999999999998875422 2344443332 33334 6899999999432210
Q ss_pred ---------------------chHhhhc--CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 77 ---------------------LWRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 77 ---------------------~~~~~~~--~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
.+...++ .+|+++|+++.+.. .+......+...+.. .+|+++|+||+|+...
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~~----~v~vi~VinK~D~l~~ 158 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLSK----RVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHhc----cCCEEEEEECCCcCCH
Confidence 0101222 46788888887642 222222222333332 5899999999999653
No 225
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.63 E-value=4.8e-15 Score=115.30 Aligned_cols=110 Identities=23% Similarity=0.260 Sum_probs=77.2
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCccccCC-----ceeeEEEEEEE---------c-------CEEEEEEEcCCCC
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIGFNVETVEY---------K-------NISFTVWDVGGQD 72 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~-----t~~~~~~~~~~---------~-------~~~~~i~d~~g~~ 72 (153)
..++..|+++|++++|||||++++.+.......+ +.+........ . -..+.+||+||++
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 3566789999999999999999998765432222 22222111110 0 0127899999999
Q ss_pred CchhchHhhhcCCCEEEEEEECCC---cccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031797 73 KIRPLWRHYFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 73 ~~~~~~~~~~~~~~~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~ 131 (153)
.|...+...++.+|++++|+|+++ ++++.... .+.. .++|+++++||+|+.
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~-----~~~~---~~vpiIvviNK~D~~ 136 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAIN-----ILKR---RKTPFVVAANKIDRI 136 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH-----HHHH---cCCCEEEEEECcCCc
Confidence 998888888889999999999986 44443322 2222 468999999999985
No 226
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.61 E-value=4.7e-15 Score=101.24 Aligned_cols=108 Identities=17% Similarity=0.166 Sum_probs=68.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeEE-----EEEEE-cCEEEEEEEcCCCCCchhch-----HhhhcC
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-----ETVEY-KNISFTVWDVGGQDKIRPLW-----RHYFQN 84 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~~-----~~~~~-~~~~~~i~d~~g~~~~~~~~-----~~~~~~ 84 (153)
+++|+++|++|+|||||+|.+.+...... ..+.+... ..+.. ....+.+||+||........ ...+.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 36899999999999999999998654321 11112110 11111 13478999999975432211 222567
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031797 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 85 ~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~ 131 (153)
+|.++++.+. ++......+...+... +.|+++|+||+|+.
T Consensus 81 ~d~~l~v~~~----~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~ 120 (197)
T cd04104 81 YDFFIIISST----RFSSNDVKLAKAIQCM---GKKFYFVRTKVDRD 120 (197)
T ss_pred cCEEEEEeCC----CCCHHHHHHHHHHHHh---CCCEEEEEecccch
Confidence 8988887432 3445555555555542 57899999999984
No 227
>PLN03126 Elongation factor Tu; Provisional
Probab=99.61 E-value=7.9e-15 Score=111.60 Aligned_cols=114 Identities=22% Similarity=0.215 Sum_probs=80.1
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCC------cc---------c----cCCceeeEEEEEEEcCEEEEEEEcCCCCCch
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGE------IV---------T----TIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~------~~---------~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~ 75 (153)
...++++++|+.++|||||++++++.. .. . ..-|.......+..++.++.++|+|||+.|.
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~ 158 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 158 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHH
Confidence 456999999999999999999998521 00 0 0112233334455678899999999999997
Q ss_pred hchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCce-EEEEEeCCCcccc
Q 031797 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNA 133 (153)
Q Consensus 76 ~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~~K~Dl~~~ 133 (153)
......+..+|++++|+|+.+...- ...+.+. .... .++| +++++||+|+.+.
T Consensus 159 ~~~~~g~~~aD~ailVVda~~G~~~-qt~e~~~-~~~~---~gi~~iIvvvNK~Dl~~~ 212 (478)
T PLN03126 159 KNMITGAAQMDGAILVVSGADGPMP-QTKEHIL-LAKQ---VGVPNMVVFLNKQDQVDD 212 (478)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHH-HHHH---cCCCeEEEEEecccccCH
Confidence 7777778899999999998753222 2223333 2332 3567 7889999999763
No 228
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.60 E-value=2.2e-14 Score=106.18 Aligned_cols=122 Identities=17% Similarity=0.239 Sum_probs=89.0
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCcc--c--cCCceeeEEEEEEEcCEEEEEEEcCCCC----------Cch-hchHh
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--T--TIPTIGFNVETVEYKNISFTVWDVGGQD----------KIR-PLWRH 80 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~~--~--~~~t~~~~~~~~~~~~~~~~i~d~~g~~----------~~~-~~~~~ 80 (153)
..++++++|.|++|||||+|++++.+-. . ...|.+.....+..++.++.++||.|-. .|. .-...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 4699999999999999999999998743 2 3446666677788899999999999932 221 11345
Q ss_pred hhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc--CCHHHHHHH
Q 031797 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDK 142 (153)
Q Consensus 81 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~--~~~~~~~~~ 142 (153)
.+..++++++|+|++++ +.+....+..++.. .+.+++++.||+|+.+. ...+++.++
T Consensus 257 aI~~a~vvllviDa~~~--~~~qD~~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~ 315 (444)
T COG1160 257 AIERADVVLLVIDATEG--ISEQDLRIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKK 315 (444)
T ss_pred HHhhcCEEEEEEECCCC--chHHHHHHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHH
Confidence 57789999999999875 43444444444444 57889999999999765 344444333
No 229
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=4.7e-15 Score=97.74 Aligned_cols=117 Identities=25% Similarity=0.384 Sum_probs=100.2
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCcc-ccCCceeeEEEEEEE----cCEEEEEEEcCCCCCchhchHhhhcCCCEEEE
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 90 (153)
-.++++++|..|.||||++++.+-+.|. ...+|.+........ ...++..||+.|++.+......++=+..+.++
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 4789999999999999999999999887 457888887765433 34899999999999998888878778899999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
+||++..-.+.+...|..++++.- .++||+++|||.|..+..
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~ 130 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARK 130 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceeccccc
Confidence 999998888889999999887754 369999999999997654
No 230
>PRK12736 elongation factor Tu; Reviewed
Probab=99.60 E-value=9.5e-15 Score=109.25 Aligned_cols=115 Identities=22% Similarity=0.200 Sum_probs=78.7
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCc------------c-------ccCCceeeEEEEEEEcCEEEEEEEcCCCCCc
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEI------------V-------TTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~------------~-------~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~ 74 (153)
...+++|.++|+.++|||||++++++... . +..-|.......+..++..+.++|+|||+.|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 34579999999999999999999976310 0 0111333333344456778999999999988
Q ss_pred hhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCce-EEEEEeCCCcccc
Q 031797 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNA 133 (153)
Q Consensus 75 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~~K~Dl~~~ 133 (153)
..........+|++++|+|+++.-.. .....+. .+.. .++| +++++||+|+.+.
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~-~t~~~~~-~~~~---~g~~~~IvviNK~D~~~~ 143 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMP-QTREHIL-LARQ---VGVPYLVVFLNKVDLVDD 143 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHH-HHHH---cCCCEEEEEEEecCCcch
Confidence 77777777889999999998753211 2222222 2222 3567 6789999999754
No 231
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.59 E-value=1.1e-14 Score=109.35 Aligned_cols=117 Identities=20% Similarity=0.133 Sum_probs=75.8
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccccC------CceeeEEEE----------------E----EE------cCEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI------PTIGFNVET----------------V----EY------KNIS 62 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~------~t~~~~~~~----------------~----~~------~~~~ 62 (153)
...++|+++|+.++|||||++++.+....... -|....+.. . .. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 45789999999999999999999653221110 111111100 0 00 1468
Q ss_pred EEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 63 ~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
+.+||+|||+.|...+......+|++++|+|+++..........+. .+... ...|+++++||+|+.+..
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~-~l~~~--gi~~iIVvvNK~Dl~~~~ 150 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLM-ALEII--GIKNIVIVQNKIDLVSKE 150 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHH-HHHHc--CCCeEEEEEEccccCCHH
Confidence 9999999999998888888888999999999985321111222222 12221 124689999999997643
No 232
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.59 E-value=2.1e-14 Score=112.28 Aligned_cols=111 Identities=21% Similarity=0.126 Sum_probs=76.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCc---cc---cCCceeeEEEEEEE-cCEEEEEEEcCCCCCchhchHhhhcCCCEEEEE
Q 031797 19 RILMVGLDAAGKTTILYKLKLGEI---VT---TIPTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~~---~~---~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 91 (153)
-|.++|+.++|||||++++.+... .+ ...|.+..+..+.. .+..+.+||+|||+.|...+...+.++|++++|
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLV 81 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV 81 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEE
Confidence 478999999999999999986432 21 12344444444443 356789999999999977777788999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCce-EEEEEeCCCccccC
Q 031797 92 VDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAM 134 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~~K~Dl~~~~ 134 (153)
+|+++. +.........++.. .++| +++|+||+|+.+..
T Consensus 82 Vda~eg--~~~qT~ehl~il~~---lgi~~iIVVlNKiDlv~~~ 120 (614)
T PRK10512 82 VACDDG--VMAQTREHLAILQL---TGNPMLTVALTKADRVDEA 120 (614)
T ss_pred EECCCC--CcHHHHHHHHHHHH---cCCCeEEEEEECCccCCHH
Confidence 998752 11111111222222 2344 68999999997643
No 233
>CHL00071 tufA elongation factor Tu
Probab=99.59 E-value=1.7e-14 Score=108.44 Aligned_cols=114 Identities=21% Similarity=0.181 Sum_probs=78.4
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcc------------c-------cCCceeeEEEEEEEcCEEEEEEEcCCCCCch
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV------------T-------TIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~------------~-------~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~ 75 (153)
..+++++++|++++|||||++++++..-. + ..-|.......+..++..+.+.|+||+..|.
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~ 89 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHH
Confidence 45699999999999999999999864110 0 0112222223344567789999999998887
Q ss_pred hchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCce-EEEEEeCCCcccc
Q 031797 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNA 133 (153)
Q Consensus 76 ~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~~K~Dl~~~ 133 (153)
......+..+|++++|+|+.+. +..........+.. .++| +++++||+|+.+.
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g--~~~qt~~~~~~~~~---~g~~~iIvvvNK~D~~~~ 143 (409)
T CHL00071 90 KNMITGAAQMDGAILVVSAADG--PMPQTKEHILLAKQ---VGVPNIVVFLNKEDQVDD 143 (409)
T ss_pred HHHHHHHHhCCEEEEEEECCCC--CcHHHHHHHHHHHH---cCCCEEEEEEEccCCCCH
Confidence 7777778899999999999753 22222222223332 3567 7789999999764
No 234
>PRK12735 elongation factor Tu; Reviewed
Probab=99.58 E-value=1.7e-14 Score=107.97 Aligned_cols=114 Identities=21% Similarity=0.179 Sum_probs=76.7
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC-------Ccc-----c-------cCCceeeEEEEEEEcCEEEEEEEcCCCCCch
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG-------EIV-----T-------TIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~-------~~~-----~-------~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~ 75 (153)
...+++.++|+.++|||||++++++. .+. . .--|.......+..++..+.++|+||+..|.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 45689999999999999999999862 110 0 0112233333344566789999999998887
Q ss_pred hchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEE-EEEeCCCcccc
Q 031797 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL-VFANKQDLPNA 133 (153)
Q Consensus 76 ~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ii-vv~~K~Dl~~~ 133 (153)
......+..+|++++|+|+.+... ......+.. +.. .++|.+ +++||+|+.+.
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~-~~~---~gi~~iivvvNK~Dl~~~ 143 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPM-PQTREHILL-ARQ---VGVPYIVVFLNKCDMVDD 143 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHH-HHH---cCCCeEEEEEEecCCcch
Confidence 666677788999999999975321 122223322 222 356755 68999999753
No 235
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.58 E-value=4.8e-14 Score=108.71 Aligned_cols=127 Identities=18% Similarity=0.284 Sum_probs=94.0
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCcc-ccCC--ceeeEEEEEEEcCEEEEEEEcCCCCCc------hhc-hHhhh-cC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKI------RPL-WRHYF-QN 84 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~d~~g~~~~------~~~-~~~~~-~~ 84 (153)
+..+++++|+||+||||+.|++.+.+.. .+.| |.+.....+..++.++++.|.||--++ +.. +.... .+
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 3566999999999999999999987644 5554 777778889999999999999993222 222 22233 35
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc----CCHHHHHHHhCCCccc
Q 031797 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLR 149 (153)
Q Consensus 85 ~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~----~~~~~~~~~~~~~~~~ 149 (153)
.|+++.|+|+++.++--.. ..+++. -+.|+++++|++|.... -+.+++.+.+|+|.+.
T Consensus 82 ~D~ivnVvDAtnLeRnLyl---tlQLlE----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~ 143 (653)
T COG0370 82 PDLIVNVVDATNLERNLYL---TLQLLE----LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVP 143 (653)
T ss_pred CCEEEEEcccchHHHHHHH---HHHHHH----cCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEE
Confidence 7999999999975333222 222222 47889999999999765 4788999999998763
No 236
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.58 E-value=5.5e-14 Score=95.88 Aligned_cols=115 Identities=17% Similarity=0.144 Sum_probs=74.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCcccc-----CCceeeEEEEEEEcCEEEEEEEcCCCCCchh-------c----hHhh
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEYKNISFTVWDVGGQDKIRP-------L----WRHY 81 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~~-----~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~-------~----~~~~ 81 (153)
.+|+++|.+|+||||++|++++.+.... ..|...........+..+.++||||-..... . ....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 4799999999999999999998764321 2355555556667889999999999543311 1 1223
Q ss_pred hcCCCEEEEEEECCCccc-HHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 82 FQNTQGLIFVVDSNDRDR-VVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 82 ~~~~~~ii~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
.+++|++++|+++.+... .......+...+... .-.++++++|+.|.....
T Consensus 81 ~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~--~~~~~ivv~T~~d~l~~~ 132 (196)
T cd01852 81 APGPHAFLLVVPLGRFTEEEEQAVETLQELFGEK--VLDHTIVLFTRGDDLEGG 132 (196)
T ss_pred CCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChH--hHhcEEEEEECccccCCC
Confidence 467899999999875221 122233333333221 124688999999876543
No 237
>PRK12739 elongation factor G; Reviewed
Probab=99.58 E-value=2.6e-14 Score=113.58 Aligned_cols=127 Identities=22% Similarity=0.196 Sum_probs=90.7
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcC-----Cc---c-------------ccCCceeeEEEEEEEcCEEEEEEEcCCCC
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLG-----EI---V-------------TTIPTIGFNVETVEYKNISFTVWDVGGQD 72 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~-----~~---~-------------~~~~t~~~~~~~~~~~~~~~~i~d~~g~~ 72 (153)
..+..+|.|+|+.++|||||+++++.. .. . ...-|.......+.+++..+.++||||+.
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 84 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV 84 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence 356789999999999999999999742 10 0 01124444456677889999999999998
Q ss_pred CchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC---CHHHHHHHhCC
Q 031797 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGL 145 (153)
Q Consensus 73 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~---~~~~~~~~~~~ 145 (153)
.|.......++.+|++++|+|+.+.-. .....+...+.. .+.|+++++||+|+.+.. ..+++.+.++.
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~--~qt~~i~~~~~~---~~~p~iv~iNK~D~~~~~~~~~~~~i~~~l~~ 155 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVE--PQSETVWRQADK---YGVPRIVFVNKMDRIGADFFRSVEQIKDRLGA 155 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCC--HHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCC
Confidence 887778888999999999999875422 222233333333 468899999999998643 34555555554
No 238
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.58 E-value=4.8e-14 Score=97.96 Aligned_cols=111 Identities=25% Similarity=0.277 Sum_probs=73.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCccccCC-----------------c-------eeeE-----------------EEEEE
Q 031797 19 RILMVGLDAAGKTTILYKLKLGEIVTTIP-----------------T-------IGFN-----------------VETVE 57 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~~~~~~~-----------------t-------~~~~-----------------~~~~~ 57 (153)
+++++|+.++|||||+++|..+.+..... | .+.. ...+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58899999999999999998654321000 0 0000 01223
Q ss_pred EcCEEEEEEEcCCCCCchhchHhhhc--CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 58 YKNISFTVWDVGGQDKIRPLWRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 58 ~~~~~~~i~d~~g~~~~~~~~~~~~~--~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
..+..+.++|+||++.|.......+. .+|++++|+|+.+.- ......+...+.. .++|+++++||+|+.+..
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~--~~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~ 154 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGI--IGMTKEHLGLALA---LNIPVFVVVTKIDLAPAN 154 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCEEEEEECccccCHH
Confidence 45678999999999988665555554 689999999986532 2222223333333 468899999999987543
No 239
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.57 E-value=6.2e-14 Score=104.97 Aligned_cols=114 Identities=21% Similarity=0.166 Sum_probs=77.1
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCC-------c------c------ccCCceeeEEEEEEEcCEEEEEEEcCCCCCch
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGE-------I------V------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~-------~------~------~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~ 75 (153)
...++|.++|+.++|||||++++++.. . . +...|.......+..++..+.+||+|||+.|.
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~ 89 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH
Confidence 557999999999999999999997420 0 0 01123333334444567789999999999887
Q ss_pred hchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceE-EEEEeCCCcccc
Q 031797 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVL-LVFANKQDLPNA 133 (153)
Q Consensus 76 ~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i-ivv~~K~Dl~~~ 133 (153)
.........+|++++|+|+.+.-.. .....+..+ .. .++|. ++++||+|+.+.
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~~-qt~e~l~~~-~~---~gi~~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 90 KNMITGAAQMDGAILVVSATDGPMP-QTREHILLA-RQ---VGVPYIVVFLNKCDMVDD 143 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHH-HH---cCCCEEEEEEEecccCCH
Confidence 7766677788999999999753211 122222222 22 24564 578999999754
No 240
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.56 E-value=4.1e-14 Score=106.29 Aligned_cols=117 Identities=21% Similarity=0.143 Sum_probs=73.5
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcccc------CCceeeEEEE--------------EE----Ec--------CEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT------IPTIGFNVET--------------VE----YK--------NIS 62 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~------~~t~~~~~~~--------------~~----~~--------~~~ 62 (153)
...++|+++|+.++|||||+.++.+...... ..|....... +. .+ ...
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 4569999999999999999999865321111 1122211100 00 00 258
Q ss_pred EEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 63 ~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
+.+||+||++.|...+......+|++++|+|+++..........+.. +... ...|+++++||+|+.+..
T Consensus 87 i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~-l~~~--~i~~iiVVlNK~Dl~~~~ 155 (411)
T PRK04000 87 VSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMA-LDII--GIKNIVIVQNKIDLVSKE 155 (411)
T ss_pred EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHH-HHHc--CCCcEEEEEEeeccccch
Confidence 99999999998877666666778999999999854211111111221 1111 124689999999997654
No 241
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.56 E-value=1.1e-13 Score=105.65 Aligned_cols=120 Identities=19% Similarity=0.135 Sum_probs=79.1
Q ss_pred HhhcccccccEEEEEcCCCCcHHHHHHHHhcCC--ccc------------c----------------------CCceeeE
Q 031797 9 FSKLFAKKEMRILMVGLDAAGKTTILYKLKLGE--IVT------------T----------------------IPTIGFN 52 (153)
Q Consensus 9 ~~~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~--~~~------------~----------------------~~t~~~~ 52 (153)
.........++++++|+.++|||||+.+++... ... . .-|....
T Consensus 19 ~~~~~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~ 98 (474)
T PRK05124 19 LHAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVA 98 (474)
T ss_pred HhhccccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEee
Confidence 333345677999999999999999999997532 100 0 0122333
Q ss_pred EEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 53 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 53 ~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
...+..++..+.++|+|||+.|.......++.+|++++|+|+.+.-.-. .... ..+..... ..|+++++||+|+.+
T Consensus 99 ~~~~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~q-t~~~-~~l~~~lg--~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 99 YRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQ-TRRH-SFIATLLG--IKHLVVAVNKMDLVD 174 (474)
T ss_pred EEEeccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcccc-chHH-HHHHHHhC--CCceEEEEEeecccc
Confidence 3445567789999999999988766666679999999999986431111 1111 11111111 247899999999974
No 242
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.55 E-value=5.3e-14 Score=110.86 Aligned_cols=125 Identities=18% Similarity=0.131 Sum_probs=84.8
Q ss_pred hHHHHHhhcccccccEEEEEcCCCCcHHHHHHHHhcCC--ccc------------c----------------------CC
Q 031797 4 SFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGE--IVT------------T----------------------IP 47 (153)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~--~~~------------~----------------------~~ 47 (153)
++..+.........++|+++|++++|||||+++++... +.. . .-
T Consensus 11 ~~~~~~~~~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~ 90 (632)
T PRK05506 11 DILAYLAQHERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGI 90 (632)
T ss_pred cHHHHHhhccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCc
Confidence 45666777777778999999999999999999997532 110 0 01
Q ss_pred ceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeC
Q 031797 48 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 127 (153)
Q Consensus 48 t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K 127 (153)
|.......+..++.++.++|+||++.|.......+..+|++++|+|+.+....+ .... ..++... ...++++++||
T Consensus 91 Tid~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~-t~e~-~~~~~~~--~~~~iivvvNK 166 (632)
T PRK05506 91 TIDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQ-TRRH-SFIASLL--GIRHVVLAVNK 166 (632)
T ss_pred CceeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcccc-CHHH-HHHHHHh--CCCeEEEEEEe
Confidence 222233445567789999999999888666666788999999999986432111 1111 1122221 23578999999
Q ss_pred CCccc
Q 031797 128 QDLPN 132 (153)
Q Consensus 128 ~Dl~~ 132 (153)
+|+.+
T Consensus 167 ~D~~~ 171 (632)
T PRK05506 167 MDLVD 171 (632)
T ss_pred ccccc
Confidence 99974
No 243
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.55 E-value=1.2e-13 Score=100.62 Aligned_cols=85 Identities=31% Similarity=0.552 Sum_probs=71.6
Q ss_pred ceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCc----------ccHHHHHHHHHHHHcCCCCC
Q 031797 48 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------DRVVEARDELHRMLNEDELR 117 (153)
Q Consensus 48 t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~ 117 (153)
|.|+....+..++..+.+||++|+...+..|..++.++++++||+|.++. ..+.+....+..+++.....
T Consensus 148 T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~ 227 (317)
T cd00066 148 TTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFA 227 (317)
T ss_pred cCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcccc
Confidence 33555556677889999999999999999999999999999999999874 46777777888888776667
Q ss_pred CceEEEEEeCCCccc
Q 031797 118 DAVLLVFANKQDLPN 132 (153)
Q Consensus 118 ~~~iivv~~K~Dl~~ 132 (153)
+.|+++++||.|+..
T Consensus 228 ~~pill~~NK~D~f~ 242 (317)
T cd00066 228 NTSIILFLNKKDLFE 242 (317)
T ss_pred CCCEEEEccChHHHH
Confidence 899999999999764
No 244
>PLN03127 Elongation factor Tu; Provisional
Probab=99.54 E-value=8.7e-14 Score=105.35 Aligned_cols=115 Identities=21% Similarity=0.153 Sum_probs=78.5
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcC------C-------cc----c--cCCceeeEEEEEEEcCEEEEEEEcCCCCCc
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLG------E-------IV----T--TIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~------~-------~~----~--~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~ 74 (153)
...+++|+++|+.++|||||++++.+. . .. + ..-|.+.....++..+..+.++|+||+..|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 356799999999999999999999632 1 00 0 111333334445556788999999999988
Q ss_pred hhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCce-EEEEEeCCCcccc
Q 031797 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNA 133 (153)
Q Consensus 75 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~~K~Dl~~~ 133 (153)
..........+|++++|+|+.+.- ..........+.. .++| +++++||+|+.+.
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~--~~qt~e~l~~~~~---~gip~iIvviNKiDlv~~ 192 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGP--MPQTKEHILLARQ---VGVPSLVVFLNKVDVVDD 192 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCC--chhHHHHHHHHHH---cCCCeEEEEEEeeccCCH
Confidence 766666677899999999986532 1222222223333 3577 5789999999753
No 245
>PRK00049 elongation factor Tu; Reviewed
Probab=99.54 E-value=7.4e-14 Score=104.53 Aligned_cols=114 Identities=19% Similarity=0.169 Sum_probs=78.0
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcc-------------------ccCCceeeEEEEEEEcCEEEEEEEcCCCCCch
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-------------------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~-------------------~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~ 75 (153)
...+++.++|+.++|||||++++++.... +..-|.......+..++..+.++|+||+..|.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 45689999999999999999999863110 00113333333444567789999999998887
Q ss_pred hchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEE-EEEeCCCcccc
Q 031797 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL-VFANKQDLPNA 133 (153)
Q Consensus 76 ~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ii-vv~~K~Dl~~~ 133 (153)
......+..+|++++|+|+.+.-. ......+ ..+.. .+.|++ +++||+|+.+.
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~-~~~~~---~g~p~iiVvvNK~D~~~~ 143 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPM-PQTREHI-LLARQ---VGVPYIVVFLNKCDMVDD 143 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCc-hHHHHHH-HHHHH---cCCCEEEEEEeecCCcch
Confidence 666677889999999999975322 1222222 33332 357765 68999999753
No 246
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.53 E-value=2e-14 Score=92.03 Aligned_cols=117 Identities=21% Similarity=0.342 Sum_probs=93.0
Q ss_pred ccccccEEEEEcCCCCcHHHHHHHHhcCCcc-ccCCceeeEEE--EEEE--cCEEEEEEEcCCCCCchhchHhhhcCCCE
Q 031797 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (153)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (153)
.+.-.+||-++|.+..|||||+-.+.++... +...+.|++.. ++.. .+..+.+||.+|++++....+...+++-+
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva 95 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA 95 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence 3445689999999999999999999988775 33556666643 3333 45688999999999999888888899999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031797 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~ 131 (153)
++|+||.+.++.+..+.+|+...-. ....-+| |+||||-|+.
T Consensus 96 IlFmFDLt~r~TLnSi~~WY~QAr~-~NktAiP-ilvGTKyD~f 137 (205)
T KOG1673|consen 96 ILFMFDLTRRSTLNSIKEWYRQARG-LNKTAIP-ILVGTKYDLF 137 (205)
T ss_pred EEEEEecCchHHHHHHHHHHHHHhc-cCCccce-EEeccchHhh
Confidence 9999999999999888888887633 3334455 7899999974
No 247
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.53 E-value=2.1e-13 Score=89.94 Aligned_cols=110 Identities=23% Similarity=0.315 Sum_probs=67.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCcc-ccCCceeeE--EEEEEEcCEEEEEEEcCCCCC----------chhchHhhhc--
Q 031797 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKNISFTVWDVGGQDK----------IRPLWRHYFQ-- 83 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~~~-~~~~t~~~~--~~~~~~~~~~~~i~d~~g~~~----------~~~~~~~~~~-- 83 (153)
.|+++|++|+|||||++.+.+.... ...++.+.. ...+.. ...+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNV-NDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR 79 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEc-cCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence 3789999999999999999954433 222232221 122222 23899999999543 2233333343
Q ss_pred -CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 84 -NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 84 -~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
.++++++++|..+..+... ..+...+.. .+.|+++++||+|+....
T Consensus 80 ~~~~~~~~v~d~~~~~~~~~--~~~~~~l~~---~~~~vi~v~nK~D~~~~~ 126 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTEID--LEMLDWLEE---LGIPFLVVLTKADKLKKS 126 (170)
T ss_pred hhhhEEEEEEEcCcCCCHhH--HHHHHHHHH---cCCCEEEEEEchhcCChH
Confidence 4578889999875532221 112222222 247899999999996543
No 248
>PRK00007 elongation factor G; Reviewed
Probab=99.53 E-value=1.6e-13 Score=109.00 Aligned_cols=127 Identities=21% Similarity=0.200 Sum_probs=88.4
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhc--CCcc-------------------ccCCceeeEEEEEEEcCEEEEEEEcCCCC
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKL--GEIV-------------------TTIPTIGFNVETVEYKNISFTVWDVGGQD 72 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~--~~~~-------------------~~~~t~~~~~~~~~~~~~~~~i~d~~g~~ 72 (153)
..+..+|.++|+.++|||||+++++. +... ....|.......+.+++..+.++||||+.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 45568999999999999999999973 1100 01123334445677789999999999998
Q ss_pred CchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC---CHHHHHHHhCC
Q 031797 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGL 145 (153)
Q Consensus 73 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~---~~~~~~~~~~~ 145 (153)
.|.......++.+|++++|+|+.+. .......+...+.. .+.|+++++||+|+.+.. ..+++.+.++.
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g--~~~qt~~~~~~~~~---~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~ 157 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGG--VEPQSETVWRQADK---YKVPRIAFVNKMDRTGADFYRVVEQIKDRLGA 157 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCC--cchhhHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCC
Confidence 8876777788999999999998643 22222223333333 467899999999998644 23455555554
No 249
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.53 E-value=2.1e-13 Score=100.13 Aligned_cols=83 Identities=29% Similarity=0.512 Sum_probs=70.5
Q ss_pred eeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCc----------ccHHHHHHHHHHHHcCCCCCCc
Q 031797 50 GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------DRVVEARDELHRMLNEDELRDA 119 (153)
Q Consensus 50 ~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~ 119 (153)
|+....+...+..+.+||.+|+...+..|..++.++++++||+|.++. ..+.+....+..+++.....+.
T Consensus 173 Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~ 252 (342)
T smart00275 173 GIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANT 252 (342)
T ss_pred ceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCC
Confidence 444555667788999999999999999999999999999999999863 4677777888888887666789
Q ss_pred eEEEEEeCCCccc
Q 031797 120 VLLVFANKQDLPN 132 (153)
Q Consensus 120 ~iivv~~K~Dl~~ 132 (153)
|+++++||.|+..
T Consensus 253 piil~~NK~D~~~ 265 (342)
T smart00275 253 SIILFLNKIDLFE 265 (342)
T ss_pred cEEEEEecHHhHH
Confidence 9999999999864
No 250
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.51 E-value=1.3e-13 Score=103.53 Aligned_cols=111 Identities=19% Similarity=0.145 Sum_probs=75.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC--ccc------------c----------------------CCceeeEEEEEEEcCE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGE--IVT------------T----------------------IPTIGFNVETVEYKNI 61 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~--~~~------------~----------------------~~t~~~~~~~~~~~~~ 61 (153)
++++++|+.++|||||+.+++... ... . .-|.+.....+..++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 489999999999999999996421 000 0 0123333445556778
Q ss_pred EEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 62 ~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
++.++|+||++.|.......+..+|++++|+|+.+.-..+ ... ...+..... ..++++++||+|+.+
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~q-t~~-~~~~~~~~~--~~~iivviNK~D~~~ 147 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQ-TRR-HSYIASLLG--IRHVVLAVNKMDLVD 147 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccc-cHH-HHHHHHHcC--CCcEEEEEEeccccc
Confidence 9999999999998766677789999999999986432111 111 112222211 235899999999975
No 251
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.51 E-value=1.6e-13 Score=109.41 Aligned_cols=113 Identities=21% Similarity=0.120 Sum_probs=78.0
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC---------------Cccc----cCCceeeEEE----EEEEcCEEEEEEEcCCC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG---------------EIVT----TIPTIGFNVE----TVEYKNISFTVWDVGGQ 71 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~---------------~~~~----~~~t~~~~~~----~~~~~~~~~~i~d~~g~ 71 (153)
.+..+|+++|+.++|||||+++++.. .+.. ...|...... .+...+..+.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 34689999999999999999999742 1111 1112222211 24456789999999999
Q ss_pred CCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 72 ~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
..|.......++.+|++++|+|+.+.-.. .....+..... .+.|+++++||+|...
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~-~t~~~~~~~~~----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMP-QTETVLRQALK----ENVKPVLFINKVDRLI 152 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCc-cHHHHHHHHHH----cCCCEEEEEEChhccc
Confidence 99987788889999999999998652111 11222222222 3567889999999864
No 252
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.50 E-value=6.8e-13 Score=93.42 Aligned_cols=118 Identities=10% Similarity=0.098 Sum_probs=74.9
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCcccc----CCceeeEEEEEEEcCEEEEEEEcCCCCCchh---c-------hH
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNISFTVWDVGGQDKIRP---L-------WR 79 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~---~-------~~ 79 (153)
....++|+++|.+|+|||||+|++++...... ..|...........+.++.++||||-..... . ..
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~ 107 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIK 107 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHH
Confidence 35679999999999999999999998764321 2344444444556788999999999654410 1 12
Q ss_pred hhhc--CCCEEEEEEECCCcc-cHH--HHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 80 HYFQ--NTQGLIFVVDSNDRD-RVV--EARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 80 ~~~~--~~~~ii~v~d~~~~~-s~~--~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
.++. ..+++++|..++... ... .+...+...+.... -.++++|.||+|...+
T Consensus 108 ~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i--~~~~ivV~T~~d~~~p 164 (249)
T cd01853 108 RYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSI--WRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhh--HhCEEEEEeCCccCCC
Confidence 2332 578888887665321 111 33334444333221 1459999999998643
No 253
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.50 E-value=2.5e-12 Score=92.33 Aligned_cols=117 Identities=12% Similarity=0.128 Sum_probs=72.9
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCcc--ccCC--ceeeEEEEEEEcCEEEEEEEcCCCCCchhc---hHhhhc---
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL---WRHYFQ--- 83 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~---~~~~~~--- 83 (153)
..+.++|+++|.+|+||||++|++++.+.. .... +...........+.++.++||||....... ....++
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l 114 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFL 114 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence 356799999999999999999999987642 1222 222222333457889999999996543211 111122
Q ss_pred ---CCCEEEEEEECC--CcccH-HHHHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 84 ---NTQGLIFVVDSN--DRDRV-VEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 84 ---~~~~ii~v~d~~--~~~s~-~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
+.|+++||..++ +.... ..+...+...+.... -.+.++++|+.|...
T Consensus 115 ~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~i--w~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 115 LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDI--WRKSLVVLTHAQFSP 167 (313)
T ss_pred hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhh--hccEEEEEECCccCC
Confidence 689999996543 22212 233344444443222 235899999999763
No 254
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.49 E-value=2.2e-13 Score=103.24 Aligned_cols=112 Identities=19% Similarity=0.179 Sum_probs=79.0
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCC--c-------------------------cc-------cCCceeeEEEEEEEcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGE--I-------------------------VT-------TIPTIGFNVETVEYKN 60 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~--~-------------------------~~-------~~~t~~~~~~~~~~~~ 60 (153)
..+++++++|+.++|||||+.+++... . .+ ..-|.......+..++
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 456899999999999999999886411 0 00 0113333344455678
Q ss_pred EEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcccHH-------HHHHHHHHHHcCCCCCCc-eEEEEEeCCCcc
Q 031797 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVV-------EARDELHRMLNEDELRDA-VLLVFANKQDLP 131 (153)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~~-~iivv~~K~Dl~ 131 (153)
..+.++|+|||+.|.......+..+|++++|+|+++ ..++ ...+.+. +... .++ ++++++||+|+.
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~-~~~~---~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHAL-LAFT---LGVKQMICCCNKMDAT 158 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHH-HHHH---cCCCcEEEEEEcccCC
Confidence 899999999999998888888999999999999975 3232 2222222 2222 345 478899999986
No 255
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.48 E-value=3.7e-13 Score=86.37 Aligned_cols=112 Identities=21% Similarity=0.261 Sum_probs=70.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcCEEEEEEEcCCC----CCchhchHhhhcCCCEEEEEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ----DKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~----~~~~~~~~~~~~~~~~ii~v~d 93 (153)
-|++++|+.|+|||||++++.+... .+..|..+.+. -.++|+||. ..|.........++|.+++|.|
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~-~~~KTq~i~~~--------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~d 72 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI-RYKKTQAIEYY--------DNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQD 72 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC-CcCccceeEec--------ccEEECChhheeCHHHHHHHHHHHhhCCEEEEEec
Confidence 4899999999999999999987643 22222222221 134799993 3333334445568999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc-ccCC---HHHHHHHhCCC
Q 031797 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP-NAMN---AAEITDKLGLH 146 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~-~~~~---~~~~~~~~~~~ 146 (153)
++++.+.- ...+... -..|+|-|+||+|+. ++.. +.++.+..|+.
T Consensus 73 at~~~~~~--pP~fa~~------f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~ 121 (143)
T PF10662_consen 73 ATEPRSVF--PPGFASM------FNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK 121 (143)
T ss_pred CCCCCccC--Cchhhcc------cCCCEEEEEECccCccchhhHHHHHHHHHHcCCC
Confidence 98764431 1111222 247899999999998 3333 33444444443
No 256
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.48 E-value=3.1e-13 Score=96.23 Aligned_cols=85 Identities=21% Similarity=0.248 Sum_probs=67.7
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcc--cc-CCceeeEEEEEEEcCEEEEEEEcCCC----CCc---hhchHhhhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEYKNISFTVWDVGGQ----DKI---RPLWRHYFQN 84 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~d~~g~----~~~---~~~~~~~~~~ 84 (153)
+-.-+++++|+|++|||||++.+.|.+.. .+ +.|.......+.+++..+++.|+||- ..- .....+..+.
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 45578999999999999999999997654 33 45677778899999999999999972 111 2345567899
Q ss_pred CCEEEEEEECCCccc
Q 031797 85 TQGLIFVVDSNDRDR 99 (153)
Q Consensus 85 ~~~ii~v~d~~~~~s 99 (153)
||.+++|+|+....+
T Consensus 141 ADlIiiVld~~~~~~ 155 (365)
T COG1163 141 ADLIIIVLDVFEDPH 155 (365)
T ss_pred CCEEEEEEecCCChh
Confidence 999999999985544
No 257
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.46 E-value=8e-13 Score=93.88 Aligned_cols=127 Identities=28% Similarity=0.398 Sum_probs=87.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCcc--cc-CCceeeEEEEEEEcC-EEEEEEEcCCCCC-------chhchHhhhcCCC
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEYKN-ISFTVWDVGGQDK-------IRPLWRHYFQNTQ 86 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~--~~-~~t~~~~~~~~~~~~-~~~~i~d~~g~~~-------~~~~~~~~~~~~~ 86 (153)
..+-++|-||+|||||++.+.+.+.. .+ +.|.......+.+.+ ..+.+-|.||--+ +.......++.++
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhc
Confidence 46789999999999999999886643 22 223333333444433 3499999999322 2333556788999
Q ss_pred EEEEEEECCCc---ccHHHHHHHHHHH-HcCCCCCCceEEEEEeCCCccccC-C-HHHHHHHhC
Q 031797 87 GLIFVVDSNDR---DRVVEARDELHRM-LNEDELRDAVLLVFANKQDLPNAM-N-AAEITDKLG 144 (153)
Q Consensus 87 ~ii~v~d~~~~---~s~~~~~~~~~~~-~~~~~~~~~~iivv~~K~Dl~~~~-~-~~~~~~~~~ 144 (153)
..+||+|.+.. ..++.....+.++ ..+..+.+.|.++|+||+|+.+.+ . ..++++.++
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq 340 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQ 340 (366)
T ss_pred eEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcC
Confidence 99999999987 6666665555443 223345678999999999996443 3 377888776
No 258
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.45 E-value=1.3e-12 Score=99.00 Aligned_cols=113 Identities=20% Similarity=0.174 Sum_probs=78.2
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC--Ccc-------------------------c-------cCCceeeEEEEEEEcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG--EIV-------------------------T-------TIPTIGFNVETVEYKN 60 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~--~~~-------------------------~-------~~~t~~~~~~~~~~~~ 60 (153)
...++++++|+.++|||||+.+++.. ... . ...|.......+..++
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 45689999999999999999999751 000 0 0113333344566678
Q ss_pred EEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCccc---H---HHHHHHHHHHHcCCCCCCce-EEEEEeCCCcc
Q 031797 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR---V---VEARDELHRMLNEDELRDAV-LLVFANKQDLP 131 (153)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~-iivv~~K~Dl~ 131 (153)
..+.++|+|||..|.......+..+|++++|+|+++... + ....+.+. +... .++| +++++||+|..
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~-~~~~---~gi~~iiv~vNKmD~~ 158 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHAL-LAFT---LGVKQMIVCINKMDDK 158 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHH-HHHH---cCCCeEEEEEEccccc
Confidence 899999999999998888888899999999999875310 0 12222222 2222 3455 67999999953
No 259
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.44 E-value=2.4e-12 Score=88.90 Aligned_cols=122 Identities=16% Similarity=0.147 Sum_probs=73.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCcccc-----CCceeeEEEEEEEcCEEEEEEEcCCCCCc----hhc-------hHhh
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEYKNISFTVWDVGGQDKI----RPL-------WRHY 81 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~~-----~~t~~~~~~~~~~~~~~~~i~d~~g~~~~----~~~-------~~~~ 81 (153)
++|+++|.+|+||||++|.+++...... ..|...........+..+.++||||-... ... ....
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 4899999999999999999998875422 23555556666889999999999994221 111 1123
Q ss_pred hcCCCEEEEEEECCCccc-HHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHH
Q 031797 82 FQNTQGLIFVVDSNDRDR-VVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITD 141 (153)
Q Consensus 82 ~~~~~~ii~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~ 141 (153)
..+.|++++|+...+... -......+...+....+ .-++|+.|..|.......+++.+
T Consensus 81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~--k~~ivvfT~~d~~~~~~~~~~l~ 139 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIW--KHTIVVFTHADELEDDSLEDYLK 139 (212)
T ss_dssp TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGG--GGEEEEEEEGGGGTTTTHHHHHH
T ss_pred cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHH--hHhhHHhhhccccccccHHHHHh
Confidence 457899999999873221 12333445555443222 23778888888766554443333
No 260
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.44 E-value=1.9e-15 Score=99.33 Aligned_cols=116 Identities=20% Similarity=0.338 Sum_probs=96.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEE----EEEEc-CEEEEEEEcCCCCCchhchHhhhcCCCEEEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE----TVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~----~~~~~-~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 91 (153)
++++|+|..|+|||+++.++....+.. +..|++.... .++.+ -.++++||..|+++|..+...+++.+++..+|
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iV 105 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIV 105 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEE
Confidence 899999999999999999998876653 3556665442 23322 36899999999999998888899999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCC---ceEEEEEeCCCcccc
Q 031797 92 VDSNDRDRVVEARDELHRMLNEDELRD---AVLLVFANKQDLPNA 133 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~---~~iivv~~K~Dl~~~ 133 (153)
||+++...|+....|..++.....+++ +|+++..||+|....
T Consensus 106 fdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~ 150 (229)
T KOG4423|consen 106 FDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKS 150 (229)
T ss_pred EEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChH
Confidence 999999999999999999887765543 778999999998753
No 261
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=8.7e-13 Score=99.33 Aligned_cols=115 Identities=23% Similarity=0.237 Sum_probs=84.5
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccccCC---ceeeEEEEEEE---cCEEEEEEEcCCCCCchhchHhhhcCCCEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP---TIGFNVETVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~---t~~~~~~~~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 88 (153)
.+..=|+++|+-.+|||||+..+.+.......+ |..+-.+++.. +...+.++|||||+.|..++..-.+-+|++
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 355678999999999999999998876653322 44444455555 346999999999999999988888889999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
++|+++++- +.. +-.+.+++....++|++++.||+|..+..
T Consensus 83 ILVVa~dDG--v~p---QTiEAI~hak~a~vP~iVAiNKiDk~~~n 123 (509)
T COG0532 83 ILVVAADDG--VMP---QTIEAINHAKAAGVPIVVAINKIDKPEAN 123 (509)
T ss_pred EEEEEccCC--cch---hHHHHHHHHHHCCCCEEEEEecccCCCCC
Confidence 999999753 221 11222222223689999999999998543
No 262
>PRK12740 elongation factor G; Reviewed
Probab=99.43 E-value=3.3e-12 Score=101.50 Aligned_cols=119 Identities=21% Similarity=0.185 Sum_probs=83.8
Q ss_pred EcCCCCcHHHHHHHHhcCCc--c-------------------ccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhh
Q 031797 23 VGLDAAGKTTILYKLKLGEI--V-------------------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHY 81 (153)
Q Consensus 23 ~G~~~~GKtsli~~~~~~~~--~-------------------~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~ 81 (153)
+|+.++|||||+++++...- . +...|.+.....+.+.+..+.+||+||+..+...+...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 59999999999999954210 0 01224444556677889999999999998887777888
Q ss_pred hcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC---CHHHHHHHhCCC
Q 031797 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLH 146 (153)
Q Consensus 82 ~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~---~~~~~~~~~~~~ 146 (153)
++.+|++++|+|+++...... ...|... .. .+.|+++++||+|+.... ..+++.+.++.+
T Consensus 81 l~~aD~vllvvd~~~~~~~~~-~~~~~~~-~~---~~~p~iiv~NK~D~~~~~~~~~~~~l~~~l~~~ 143 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQT-ETVWRQA-EK---YGVPRIIFVNKMDRAGADFFRVLAQLQEKLGAP 143 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHH-HHHHHHH-HH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCC
Confidence 899999999999986544432 2223322 22 468999999999987543 345555555543
No 263
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.42 E-value=1.9e-12 Score=104.82 Aligned_cols=113 Identities=19% Similarity=0.125 Sum_probs=78.6
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCc--c----------cc-------CCceeeEEEEEEE----------------
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEI--V----------TT-------IPTIGFNVETVEY---------------- 58 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~--~----------~~-------~~t~~~~~~~~~~---------------- 58 (153)
..+..+|+|+|+.++|||||+.+++...- . .. .-|.......+.+
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 35678999999999999999999975320 0 00 0011111111222
Q ss_pred cCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031797 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~ 131 (153)
.+..++++|+|||..|.......++.+|+.++|+|+.+.-.. .....|..... .++|+++++||+|..
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~-~t~~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-QTETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcc-cHHHHHHHHHH----CCCCEEEEEECCccc
Confidence 257889999999999988888889999999999998753222 22333444433 478999999999997
No 264
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.41 E-value=8.8e-13 Score=92.14 Aligned_cols=119 Identities=21% Similarity=0.408 Sum_probs=81.2
Q ss_pred hcccccccEEEEEcCCCCcHHHHHHHHhcCCcccc---CCceeeE-EEEEEEcCEEEEEEEcCCCCC-------chhchH
Q 031797 11 KLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFN-VETVEYKNISFTVWDVGGQDK-------IRPLWR 79 (153)
Q Consensus 11 ~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~---~~t~~~~-~~~~~~~~~~~~i~d~~g~~~-------~~~~~~ 79 (153)
+.....+.+++++|..|+||||++|+++.+...+. ..+..+. ..........+.+||+||-+. ++..+.
T Consensus 33 ~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~ 112 (296)
T COG3596 33 QLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYR 112 (296)
T ss_pred hhcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHH
Confidence 34456789999999999999999999997554321 1111111 112233457899999999554 666778
Q ss_pred hhhcCCCEEEEEEECCCcccHHHHH-HHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 80 HYFQNTQGLIFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 80 ~~~~~~~~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
.++.+.|.+++++++.++ ..... ..+.+++... .+.+++++.|.+|...+
T Consensus 113 d~l~~~DLvL~l~~~~dr--aL~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p 163 (296)
T COG3596 113 DYLPKLDLVLWLIKADDR--ALGTDEDFLRDVIILG--LDKRVLFVVTQADRAEP 163 (296)
T ss_pred HHhhhccEEEEeccCCCc--cccCCHHHHHHHHHhc--cCceeEEEEehhhhhcc
Confidence 888999999999999764 22222 3334443322 24789999999998643
No 265
>PTZ00416 elongation factor 2; Provisional
Probab=99.40 E-value=2.9e-12 Score=103.66 Aligned_cols=112 Identities=21% Similarity=0.190 Sum_probs=77.2
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCC--cc----------ccC-------CceeeEEEEEEEc----------CEEEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGE--IV----------TTI-------PTIGFNVETVEYK----------NISFTV 65 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~--~~----------~~~-------~t~~~~~~~~~~~----------~~~~~i 65 (153)
.+..+|+++|+.++|||||+++++... .. ... .|.......+.+. +..+.+
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 556799999999999999999997621 10 000 0111111122222 567999
Q ss_pred EEcCCCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031797 66 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 66 ~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~ 131 (153)
+||||+..|.......++.+|++++|+|+.+.-.. .....|..... .+.|+++++||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~-~t~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCV-QTETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCc-cHHHHHHHHHH----cCCCEEEEEEChhhh
Confidence 99999999988888889999999999998753222 22333333333 368999999999997
No 266
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=5.9e-12 Score=93.96 Aligned_cols=119 Identities=18% Similarity=0.235 Sum_probs=84.8
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcc--cc--CCceeeEEEEEEEcCEEEEEEEcCCCCC-c--------hhchHhh
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TT--IPTIGFNVETVEYKNISFTVWDVGGQDK-I--------RPLWRHY 81 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~--~~--~~t~~~~~~~~~~~~~~~~i~d~~g~~~-~--------~~~~~~~ 81 (153)
.+..+|+++|+||+|||||+|.+.+.+.. .+ -.|.+.....++.++.++.+.||.|-.+ - -......
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 45699999999999999999999998754 22 3466666778889999999999999544 1 0112334
Q ss_pred hcCCCEEEEEEEC--CCcccHHHHHHHHHHHHc-----CCCCCCceEEEEEeCCCcccc
Q 031797 82 FQNTQGLIFVVDS--NDRDRVVEARDELHRMLN-----EDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 82 ~~~~~~ii~v~d~--~~~~s~~~~~~~~~~~~~-----~~~~~~~~iivv~~K~Dl~~~ 133 (153)
++.+|++++|+|+ +.-++...+.+.+...-. -..+.+.|++++.||+|+...
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 6789999999999 333333333333333211 123456889999999999765
No 267
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=3e-12 Score=96.63 Aligned_cols=117 Identities=21% Similarity=0.219 Sum_probs=85.7
Q ss_pred ccccccEEEEEcCCCCcHHHHHHHHhcCCccccC---CceeeEEEEEEE-cCEEEEEEEcCCCCCchhchHhhhcCCCEE
Q 031797 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---PTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (153)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~---~t~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 88 (153)
..+++--|.++|+-..|||||+..|.+....... -|..+-...+.. ++.++++.|||||.-|..++..-.+-+|.+
T Consensus 149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIv 228 (683)
T KOG1145|consen 149 LEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIV 228 (683)
T ss_pred cCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEE
Confidence 3467788999999999999999999887654321 122232233333 678999999999999999998888889999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
++|+.++|- ...+-.+.+......++|+++.+||+|.++..
T Consensus 229 VLVVAadDG-----VmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~ 269 (683)
T KOG1145|consen 229 VLVVAADDG-----VMPQTLEAIKHAKSANVPIVVAINKIDKPGAN 269 (683)
T ss_pred EEEEEccCC-----ccHhHHHHHHHHHhcCCCEEEEEeccCCCCCC
Confidence 999998652 22222233333334689999999999987543
No 268
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.38 E-value=4.2e-12 Score=89.94 Aligned_cols=116 Identities=18% Similarity=0.188 Sum_probs=78.8
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCcccc----CCceeeEEEEEEEcCEEEEEEEcCCCCC------c------hhc
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNISFTVWDVGGQDK------I------RPL 77 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~d~~g~~~------~------~~~ 77 (153)
+.+..+|+++|.||+|||||.|.+++.+.... ..|.......+...+..+.++|+||.-. + ...
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 45678999999999999999999999886532 2344444556777889999999999321 1 111
Q ss_pred hHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 78 ~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
....++.+|++++++|+++...... -...+.+... .++|=++|.||.|...+
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~--p~vl~~l~~y--s~ips~lvmnkid~~k~ 200 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLH--PRVLHMLEEY--SKIPSILVMNKIDKLKQ 200 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccC--hHHHHHHHHH--hcCCceeeccchhcchh
Confidence 2234568999999999985322211 1112222221 46788999999998644
No 269
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.38 E-value=1.1e-11 Score=86.33 Aligned_cols=110 Identities=15% Similarity=0.100 Sum_probs=70.6
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEE
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 92 (153)
...+..|+++|++|+|||||++.+.+..... .....+. .......+.++.++|+||.. .. .....+.+|++++++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVllvi 111 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDI--NA-MIDIAKVADLVLLLI 111 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchH--HH-HHHHHHhcCEEEEEE
Confidence 3556889999999999999999987642111 1111121 12233467889999999863 22 233468899999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCce-EEEEEeCCCccc
Q 031797 93 DSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPN 132 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~~K~Dl~~ 132 (153)
|++...... ...+...+.. .+.| +++|+||+|+.+
T Consensus 112 Da~~~~~~~--~~~i~~~l~~---~g~p~vi~VvnK~D~~~ 147 (225)
T cd01882 112 DASFGFEME--TFEFLNILQV---HGFPRVMGVLTHLDLFK 147 (225)
T ss_pred ecCcCCCHH--HHHHHHHHHH---cCCCeEEEEEeccccCC
Confidence 987543322 2233333333 3456 456999999964
No 270
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.37 E-value=1.9e-12 Score=88.35 Aligned_cols=118 Identities=22% Similarity=0.371 Sum_probs=82.0
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCc----cccCCceeeEEEEEEEcC-EEEEEEEcCCCCCc-----hhchHhhhcCC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEI----VTTIPTIGFNVETVEYKN-ISFTVWDVGGQDKI-----RPLWRHYFQNT 85 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~----~~~~~t~~~~~~~~~~~~-~~~~i~d~~g~~~~-----~~~~~~~~~~~ 85 (153)
...||+++|.+|+||||+-..++.+.. ....+|++++.....+-+ .-+.+||++|++.+ .......++.+
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 357999999999999999777664432 234556677666666544 88999999999854 23455678899
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHHcC--CCCCCceEEEEEeCCCccccC
Q 031797 86 QGLIFVVDSNDRDRVVEARDELHRMLNE--DELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 86 ~~ii~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~~iivv~~K~Dl~~~~ 134 (153)
+++++|||++.. .++.....+...+.. ...|...+.+..+|+|+....
T Consensus 83 ~vli~vFDves~-e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d 132 (295)
T KOG3886|consen 83 QVLIYVFDVESR-EMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQED 132 (295)
T ss_pred eeeeeeeeccch-hhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccc
Confidence 999999999743 233333333332211 122778899999999998653
No 271
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1.7e-11 Score=96.68 Aligned_cols=126 Identities=20% Similarity=0.177 Sum_probs=92.1
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCC--------------cccc-------CCceeeEEEEEEEcC-EEEEEEEcCCC
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGE--------------IVTT-------IPTIGFNVETVEYKN-ISFTVWDVGGQ 71 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~--------------~~~~-------~~t~~~~~~~~~~~~-~~~~i~d~~g~ 71 (153)
..+..+|.|+|+.++||||+..+++... +... --|+......+.+++ .+++++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 4567899999999999999999997421 1111 113334445677785 99999999999
Q ss_pred CCchhchHhhhcCCCEEEEEEECCCcccHHH-HHHHHHHHHcCCCCCCceEEEEEeCCCccccC---CHHHHHHHhCC
Q 031797 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVE-ARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGL 145 (153)
Q Consensus 72 ~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~---~~~~~~~~~~~ 145 (153)
-.|.......++-+|+.++|+|+.+- ++. ....|+.... .++|.+++.||+|..... ..+++.+.++.
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveG--V~~QTEtv~rqa~~----~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~ 158 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEG--VEPQTETVWRQADK----YGVPRILFVNKMDRLGADFYLVVEQLKERLGA 158 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCC--eeecHHHHHHHHhh----cCCCeEEEEECccccccChhhhHHHHHHHhCC
Confidence 99999999999999999999999642 332 3334444433 579999999999987643 45566666554
No 272
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.35 E-value=9.6e-12 Score=89.32 Aligned_cols=125 Identities=26% Similarity=0.310 Sum_probs=79.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCcc--ccC-CceeeEEEEEE-EcCEEEEEEEcCCCCC-------chhchHhhhcCCCE
Q 031797 19 RILMVGLDAAGKTTILYKLKLGEIV--TTI-PTIGFNVETVE-YKNISFTVWDVGGQDK-------IRPLWRHYFQNTQG 87 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~~~--~~~-~t~~~~~~~~~-~~~~~~~i~d~~g~~~-------~~~~~~~~~~~~~~ 87 (153)
-|-++|-|++|||||++.+.+.+.. .++ .|.-.+-..+. .....+.+-|.||--+ ........++.+.+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~v 240 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRV 240 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhhe
Confidence 4678999999999999999876533 221 12222223333 4556799999998322 23345667889999
Q ss_pred EEEEEECCCccc--HHHHHHHHHHHHcC--CCCCCceEEEEEeCCCcc-ccCCHHHHHHHh
Q 031797 88 LIFVVDSNDRDR--VVEARDELHRMLNE--DELRDAVLLVFANKQDLP-NAMNAAEITDKL 143 (153)
Q Consensus 88 ii~v~d~~~~~s--~~~~~~~~~~~~~~--~~~~~~~iivv~~K~Dl~-~~~~~~~~~~~~ 143 (153)
++.|+|++..+. ..+....+...+.. ....+.|.++|+||+|+. +.+..+++++.+
T Consensus 241 L~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l 301 (369)
T COG0536 241 LLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKAL 301 (369)
T ss_pred eEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHH
Confidence 999999985443 22222223333222 234578899999999954 445555555544
No 273
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=2.5e-11 Score=89.10 Aligned_cols=113 Identities=25% Similarity=0.253 Sum_probs=79.3
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCC--cc--------------------------------ccCCceeeEEEEEEEcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGE--IV--------------------------------TTIPTIGFNVETVEYKN 60 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~--~~--------------------------------~~~~t~~~~~~~~~~~~ 60 (153)
...++++++|+.++|||||+-+++..- +. +..-|.......+....
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 457999999999999999999996421 00 01113344445566677
Q ss_pred EEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcccHHH-----HH---HHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVE-----AR---DELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~-----~~---~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
.++.++|+|||..|-..+..-...+|+.++|+|+.+.+.-.. .. ..+...+. -..+|++.||+|+.+
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-----i~~lIVavNKMD~v~ 159 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-----IKQLIVAVNKMDLVS 159 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-----CceEEEEEEcccccc
Confidence 899999999999998887778889999999999976532111 11 12222221 345899999999985
No 274
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.33 E-value=1.9e-11 Score=87.55 Aligned_cols=121 Identities=18% Similarity=0.318 Sum_probs=70.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCcccc-----------CCceeeEEEEEEE--c--CEEEEEEEcCCCCCc-------
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-----------IPTIGFNVETVEY--K--NISFTVWDVGGQDKI------- 74 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~-----------~~t~~~~~~~~~~--~--~~~~~i~d~~g~~~~------- 74 (153)
.++|+++|++|+|||||+|+|++...... ..+..+....... . ..++.++||||....
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 58999999999999999999998654321 1223333333222 2 368999999993221
Q ss_pred hhc-------hHhh-------------hcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 75 RPL-------WRHY-------------FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 75 ~~~-------~~~~-------------~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
... ...+ -..+|+.+|+++.+.. .+....-.....+. ..+++|-|+.|.|.....
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~Di~~mk~Ls----~~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLDIEFMKRLS----KRVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHHHHHHHHHT----TTSEEEEEESTGGGS-HH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHHHHHHHHhc----ccccEEeEEecccccCHH
Confidence 000 0011 1146889999997632 23333333444444 358899999999998776
Q ss_pred CHHHHHHH
Q 031797 135 NAAEITDK 142 (153)
Q Consensus 135 ~~~~~~~~ 142 (153)
+...+.+.
T Consensus 159 el~~~k~~ 166 (281)
T PF00735_consen 159 ELQAFKQR 166 (281)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65555443
No 275
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.33 E-value=1.2e-11 Score=98.98 Aligned_cols=113 Identities=21% Similarity=0.144 Sum_probs=76.2
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCC--cc----------ccC-------CceeeEEEEEE----EcCEEEEEEEcCCC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGE--IV----------TTI-------PTIGFNVETVE----YKNISFTVWDVGGQ 71 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~--~~----------~~~-------~t~~~~~~~~~----~~~~~~~i~d~~g~ 71 (153)
.+..+|+++|+.++|||||+.+++... .. +.. -|.......+. ..+..+.++||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 456799999999999999999997521 10 000 01111111122 24678999999999
Q ss_pred CCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 72 ~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
..|.......++.+|++++|+|+.+.-.. .....|..... .+.|.++++||+|...
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~-~t~~~~~~~~~----~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMP-QTETVLRQALR----ERVKPVLFINKVDRLI 153 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCc-cHHHHHHHHHH----cCCCeEEEEECchhhc
Confidence 99988888889999999999998653221 22333333322 2467799999999863
No 276
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.31 E-value=2.4e-11 Score=88.42 Aligned_cols=87 Identities=30% Similarity=0.541 Sum_probs=72.8
Q ss_pred CceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcc----------cHHHHHHHHHHHHcCCCC
Q 031797 47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD----------RVVEARDELHRMLNEDEL 116 (153)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~----------s~~~~~~~~~~~~~~~~~ 116 (153)
+|.|+....++.++.++.+.|.+||..-+.-|..++.++++++||+++++-+ .+.+....+..+++....
T Consensus 181 ~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F 260 (354)
T KOG0082|consen 181 PTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWF 260 (354)
T ss_pred CcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCccc
Confidence 4668888889999999999999999999999999999999999999987533 234455667777777777
Q ss_pred CCceEEEEEeCCCcccc
Q 031797 117 RDAVLLVFANKQDLPNA 133 (153)
Q Consensus 117 ~~~~iivv~~K~Dl~~~ 133 (153)
.+.++|+++||.|+..+
T Consensus 261 ~~tsiiLFLNK~DLFeE 277 (354)
T KOG0082|consen 261 ANTSIILFLNKKDLFEE 277 (354)
T ss_pred ccCcEEEEeecHHHHHH
Confidence 88999999999999643
No 277
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.30 E-value=2.1e-11 Score=92.59 Aligned_cols=118 Identities=17% Similarity=0.178 Sum_probs=75.6
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCccccC------Cce--eeEEE---------------EEEE------------
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI------PTI--GFNVE---------------TVEY------------ 58 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~------~t~--~~~~~---------------~~~~------------ 58 (153)
...+++|.++|+-.+|||||+..+.+....... -|. ++... ....
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 355789999999999999999999864321100 011 11100 0000
Q ss_pred ----cCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 59 ----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 59 ----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
....+.++|+|||+.|...+......+|++++|+|+.+........+.+. ..... .-.++++++||+|+.+..
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~l--gi~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIM--KLKHIIILQNKIDLVKEA 187 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHc--CCCcEEEEEecccccCHH
Confidence 02478999999999998777777889999999999986311111222222 22221 124689999999997643
No 278
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.26 E-value=1.3e-11 Score=90.74 Aligned_cols=110 Identities=15% Similarity=0.192 Sum_probs=61.3
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCce-----eeEEEEEEEcC-EEEEEEEcCCCCCchhchHhh-----
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTI-----GFNVETVEYKN-ISFTVWDVGGQDKIRPLWRHY----- 81 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~-----~~~~~~~~~~~-~~~~i~d~~g~~~~~~~~~~~----- 81 (153)
...+++|.|+|++|+|||||||.+.+-.-.+ ..+.+ ......+..+. -++.+||.||..........|
T Consensus 32 ~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 32 DNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp HH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred hcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 3567899999999999999999997632211 11111 12223333333 469999999953322222222
Q ss_pred hcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCc
Q 031797 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (153)
Q Consensus 82 ~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl 130 (153)
+...|.+|++.+. .|.....++...+.+ .+.|+++|-||+|.
T Consensus 112 ~~~yD~fiii~s~----rf~~ndv~La~~i~~---~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 112 FYRYDFFIIISSE----RFTENDVQLAKEIQR---MGKKFYFVRTKVDS 153 (376)
T ss_dssp GGG-SEEEEEESS----S--HHHHHHHHHHHH---TT-EEEEEE--HHH
T ss_pred ccccCEEEEEeCC----CCchhhHHHHHHHHH---cCCcEEEEEecccc
Confidence 4567887777643 366666666666666 57899999999996
No 279
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.25 E-value=5e-11 Score=86.01 Aligned_cols=127 Identities=20% Similarity=0.231 Sum_probs=89.2
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCc------------------------------------cccCCceeeEEEEEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEI------------------------------------VTTIPTIGFNVETVEY 58 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~------------------------------------~~~~~t~~~~~~~~~~ 58 (153)
...++++-||+-.-||||||-|++.+.- .+.--|+++.+..+.-
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 4568999999999999999999976320 0111244555666667
Q ss_pred cCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHH---HHHHHHcCCCCCCceEEEEEeCCCccccC-
Q 031797 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQDLPNAM- 134 (153)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~~~iivv~~K~Dl~~~~- 134 (153)
.+.++.+-|+|||+.|...+-.-...||..++++|+. ........ ++..++.. ..+++..||+||.+-.
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR--~Gvl~QTrRHs~I~sLLGI-----rhvvvAVNKmDLvdy~e 156 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDAR--KGVLEQTRRHSFIASLLGI-----RHVVVAVNKMDLVDYSE 156 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecc--hhhHHHhHHHHHHHHHhCC-----cEEEEEEeeecccccCH
Confidence 8899999999999999888877778899999999983 22322222 23333222 3478899999998743
Q ss_pred --------CHHHHHHHhCCCcc
Q 031797 135 --------NAAEITDKLGLHSL 148 (153)
Q Consensus 135 --------~~~~~~~~~~~~~~ 148 (153)
+...|++++++...
T Consensus 157 ~~F~~I~~dy~~fa~~L~~~~~ 178 (431)
T COG2895 157 EVFEAIVADYLAFAAQLGLKDV 178 (431)
T ss_pred HHHHHHHHHHHHHHHHcCCCcc
Confidence 34556666666543
No 280
>COG2262 HflX GTPases [General function prediction only]
Probab=99.23 E-value=2.7e-10 Score=83.74 Aligned_cols=121 Identities=19% Similarity=0.234 Sum_probs=86.0
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCcc---ccCCceeeEEEEEEEc-CEEEEEEEcCCCCCc-----hhchHh---h
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNVETVEYK-NISFTVWDVGGQDKI-----RPLWRH---Y 81 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~---~~~~t~~~~~~~~~~~-~~~~~i~d~~g~~~~-----~~~~~~---~ 81 (153)
......|.++|=.|+|||||+|++.+.... ..+.|.+.....+... +..+.+-||-|.-+- -..+.+ .
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE 268 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEE 268 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHH
Confidence 355688999999999999999999876543 2356777777777776 578888899884221 111122 2
Q ss_pred hcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCC
Q 031797 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (153)
Q Consensus 82 ~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~ 135 (153)
...+|.++.|+|++++... .........+........|+++|.||+|+..+..
T Consensus 269 ~~~aDlllhVVDaSdp~~~-~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~ 321 (411)
T COG2262 269 VKEADLLLHVVDASDPEIL-EKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE 321 (411)
T ss_pred hhcCCEEEEEeecCChhHH-HHHHHHHHHHHHcCCCCCCEEEEEecccccCchh
Confidence 3478999999999998443 3334444555555446799999999999765543
No 281
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.23 E-value=7.2e-11 Score=74.30 Aligned_cols=89 Identities=17% Similarity=0.135 Sum_probs=63.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCccccC--CceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECC
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVTTI--PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~ 95 (153)
+|++++|..|+|||+|+.++....+.... +|.+ +........+.++.+++|++.+
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~~~ 57 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWRVD 57 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEEEEEEcc
Confidence 58999999999999999999766554221 2222 3333345577889999999999
Q ss_pred CcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 96 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
..+++... |...+ ......++|.++++||.|+.+
T Consensus 58 ~~~s~~~~--~~~~i-~~~~k~dl~~~~~~nk~dl~~ 91 (124)
T smart00010 58 DRDSADNK--NVPEV-LVGNKSDLPILVGGNRDVLEE 91 (124)
T ss_pred CHHHHHHH--hHHHH-HhcCCCCCcEEEEeechhhHh
Confidence 88888654 33333 333346788999999999854
No 282
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.22 E-value=1.1e-10 Score=87.00 Aligned_cols=114 Identities=20% Similarity=0.258 Sum_probs=84.8
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCC--cccc-------------CCceee----EEEEEEEcCEEEEEEEcCCCCCchh
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGE--IVTT-------------IPTIGF----NVETVEYKNISFTVWDVGGQDKIRP 76 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~--~~~~-------------~~t~~~----~~~~~~~~~~~~~i~d~~g~~~~~~ 76 (153)
.-.+|.|+.+-..|||||+..++... |.+. ....++ ..+-+.+++.+++|.|||||..|..
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 45789999999999999999997642 2111 111222 2345788999999999999999999
Q ss_pred chHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 77 ~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
.....+..+|++++++|+.+ ..+....-.+...+. .+.+-|+|.||+|.+++.
T Consensus 84 EVERvl~MVDgvlLlVDA~E-GpMPQTrFVlkKAl~----~gL~PIVVvNKiDrp~Ar 136 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASE-GPMPQTRFVLKKALA----LGLKPIVVINKIDRPDAR 136 (603)
T ss_pred hhhhhhhhcceEEEEEEccc-CCCCchhhhHHHHHH----cCCCcEEEEeCCCCCCCC
Confidence 99999999999999999964 233333444444444 367779999999998764
No 283
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=2.8e-10 Score=86.19 Aligned_cols=115 Identities=17% Similarity=0.194 Sum_probs=81.3
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCC-----------cccc-------CCceeeEEEEEEEcC---EEEEEEEcCCCCC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGE-----------IVTT-------IPTIGFNVETVEYKN---ISFTVWDVGGQDK 73 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~-----------~~~~-------~~t~~~~~~~~~~~~---~~~~i~d~~g~~~ 73 (153)
.+-.++.|+.+-..|||||..+++... +... --|+-.+...+.++. ..++++|||||..
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 566899999999999999999996421 1111 112222333444444 9999999999999
Q ss_pred chhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 74 ~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
|.......+..++++++|+|+.+--.-+.....+..+ . .+..+|.|+||+|++.+.
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAf-e----~~L~iIpVlNKIDlp~ad 193 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAF-E----AGLAIIPVLNKIDLPSAD 193 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHH-H----cCCeEEEeeeccCCCCCC
Confidence 9988888899999999999997532222222233332 2 467899999999998654
No 284
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=2e-10 Score=85.00 Aligned_cols=129 Identities=21% Similarity=0.293 Sum_probs=93.7
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhc--CCcc----------ccC---------C----ceeeEEEEEEEcCEEEEEEEcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKL--GEIV----------TTI---------P----TIGFNVETVEYKNISFTVWDVG 69 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~--~~~~----------~~~---------~----t~~~~~~~~~~~~~~~~i~d~~ 69 (153)
.+.....|+-+|.+|||||-..++- +.+. ... . ++.....++.+.+..+++.|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 3456678899999999999998852 1110 000 1 2222335678899999999999
Q ss_pred CCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc---CCHHHHHHHhCCC
Q 031797 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA---MNAAEITDKLGLH 146 (153)
Q Consensus 70 g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~---~~~~~~~~~~~~~ 146 (153)
||+.|..-.-..+-.+|..++|+|+..- .+.....+.+..+. .++||+=++||+|.... +.++++.+.+++.
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKG--iE~qT~KLfeVcrl---R~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~ 164 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKG--IEPQTLKLFEVCRL---RDIPIFTFINKLDREGRDPLELLDEIEEELGIQ 164 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccC--ccHHHHHHHHHHhh---cCCceEEEeeccccccCChHHHHHHHHHHhCcc
Confidence 9999987777788899999999998642 44444455555444 68999999999998754 3578888888776
Q ss_pred cc
Q 031797 147 SL 148 (153)
Q Consensus 147 ~~ 148 (153)
..
T Consensus 165 ~~ 166 (528)
T COG4108 165 CA 166 (528)
T ss_pred ee
Confidence 43
No 285
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.19 E-value=2.4e-11 Score=91.08 Aligned_cols=117 Identities=16% Similarity=0.170 Sum_probs=79.5
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCcc--cc-CCceeeEEEEEEEcCEEEEEEEcCCCCCc----------hh-chH
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEYKNISFTVWDVGGQDKI----------RP-LWR 79 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~d~~g~~~~----------~~-~~~ 79 (153)
.+.+..+++||-+++|||||++.+...... .+ ++|.....+.+.++=.+++++||||--.. .. ...
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITAL 244 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITAL 244 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence 577899999999999999999888765543 22 34555666777778889999999993211 11 112
Q ss_pred hhhcCCCEEEEEEECCCcc--cHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 80 HYFQNTQGLIFVVDSNDRD--RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 80 ~~~~~~~~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
..++ .+|+|++|+++.. |..+....+..+ .... .+.|+|+|+||+|+...+
T Consensus 245 AHLr--aaVLYfmDLSe~CGySva~QvkLfhsI-KpLF-aNK~~IlvlNK~D~m~~e 297 (620)
T KOG1490|consen 245 AHLR--SAVLYFMDLSEMCGYSVAAQVKLYHSI-KPLF-ANKVTILVLNKIDAMRPE 297 (620)
T ss_pred HHhh--hhheeeeechhhhCCCHHHHHHHHHHh-HHHh-cCCceEEEeecccccCcc
Confidence 2233 5689999998655 344433333333 2222 578999999999997654
No 286
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.18 E-value=2.7e-10 Score=85.15 Aligned_cols=128 Identities=19% Similarity=0.194 Sum_probs=87.5
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCc-------c----c-------cCCceeeEEEEEEE-----cCEEEEEEEcCCC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEI-------V----T-------TIPTIGFNVETVEY-----KNISFTVWDVGGQ 71 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~-------~----~-------~~~t~~~~~~~~~~-----~~~~~~i~d~~g~ 71 (153)
.+-.+..|+.+-.+|||||..|++...- . . .--|+-.+...+.+ +...++++|||||
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 3457889999999999999999975321 0 0 01122222333333 4489999999999
Q ss_pred CCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC---CHHHHHHHhCCCc
Q 031797 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHS 147 (153)
Q Consensus 72 ~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~---~~~~~~~~~~~~~ 147 (153)
..|.-.....+..|.+.++|+|++.--.-+.+...+..+ . .+.-++-|+||+|++.+. ..+++.+-+|++.
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAl-e----~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~ 160 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E----NNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDA 160 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHH-H----cCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCc
Confidence 999777777788899999999997542223333333333 2 467899999999998754 3566666677653
No 287
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.18 E-value=6.6e-10 Score=84.67 Aligned_cols=134 Identities=18% Similarity=0.200 Sum_probs=95.7
Q ss_pred hhcccccccEEEEEcCCCCcHHHHHHHHhcCCcccc-----CCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcC
Q 031797 10 SKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN 84 (153)
Q Consensus 10 ~~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-----~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~ 84 (153)
++...++.++.+++|+.++|||.++++|+++.+... .+...++..........+.+-|.+-. ......... ..
T Consensus 418 ~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~ 495 (625)
T KOG1707|consen 418 KKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AA 495 (625)
T ss_pred cccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ce
Confidence 455667789999999999999999999999766531 22233333344445566777777654 222221212 66
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 85 ~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|++.++||++++.++.-........... ...|+++|++|.|+.... ..+++.++++++.-
T Consensus 496 cDv~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P 561 (625)
T KOG1707|consen 496 CDVACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPP 561 (625)
T ss_pred eeeEEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCC
Confidence 89999999999999998777766655444 689999999999997532 45899999988753
No 288
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.17 E-value=1.2e-09 Score=85.19 Aligned_cols=115 Identities=12% Similarity=0.113 Sum_probs=71.6
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCcc-cc---CCceeeEEEEEEEcCEEEEEEEcCCCCCch-------hc---hHhh
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TT---IPTIGFNVETVEYKNISFTVWDVGGQDKIR-------PL---WRHY 81 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~~-~~---~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~-------~~---~~~~ 81 (153)
..++|+++|.+|+||||++|++++.+.. .. ..|...........+..+.++||||-.... .. ...+
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~ 196 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF 196 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence 3478999999999999999999987633 11 224333333334567899999999964321 11 1123
Q ss_pred hc--CCCEEEEEEECCCcccH-H--HHHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 82 FQ--NTQGLIFVVDSNDRDRV-V--EARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 82 ~~--~~~~ii~v~d~~~~~s~-~--~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
+. ++|++|+|..++..... . .....+...+....+ .-+||+.|+.|...
T Consensus 197 Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iw--k~tIVVFThgD~lp 250 (763)
T TIGR00993 197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIW--FNAIVTLTHAASAP 250 (763)
T ss_pred HhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhH--cCEEEEEeCCccCC
Confidence 33 58999999876533222 1 233334444433222 23788999998864
No 289
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.15 E-value=2e-10 Score=83.59 Aligned_cols=77 Identities=27% Similarity=0.434 Sum_probs=53.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCcc-------ccCCceeeEEEEE-------------------E-EcCEEEEEEEcCCC-
Q 031797 20 ILMVGLDAAGKTTILYKLKLGEIV-------TTIPTIGFNVETV-------------------E-YKNISFTVWDVGGQ- 71 (153)
Q Consensus 20 i~i~G~~~~GKtsli~~~~~~~~~-------~~~~t~~~~~~~~-------------------~-~~~~~~~i~d~~g~- 71 (153)
+.++|.+++|||||++++.+.+.. +..|+.+...... + .....+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 478999999999999999987642 2234444333211 1 12367999999996
Q ss_pred ---CCchhc---hHhhhcCCCEEEEEEECCC
Q 031797 72 ---DKIRPL---WRHYFQNTQGLIFVVDSND 96 (153)
Q Consensus 72 ---~~~~~~---~~~~~~~~~~ii~v~d~~~ 96 (153)
+.+... ....++.+|++++|+|++.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 334333 3345899999999999963
No 290
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.15 E-value=7.5e-10 Score=73.50 Aligned_cols=64 Identities=25% Similarity=0.343 Sum_probs=42.2
Q ss_pred EEEEEEEcCCCCC----chhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCC
Q 031797 61 ISFTVWDVGGQDK----IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128 (153)
Q Consensus 61 ~~~~i~d~~g~~~----~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~ 128 (153)
..+.++|+||... .......+++.+|++++|.+++...+-. ....+....... ...+++|.||.
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~-~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTES-DMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGH-HHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchH-HHHHHHHHhcCC---CCeEEEEEcCC
Confidence 4689999999532 2355677789999999999998644433 333444444432 23389999984
No 291
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.11 E-value=6.3e-11 Score=83.02 Aligned_cols=68 Identities=19% Similarity=0.143 Sum_probs=35.5
Q ss_pred EEEEEEcCCCCCchhchHhhh--------cCCCEEEEEEECCCcccHHHHHHH----HHHHHcCCCCCCceEEEEEeCCC
Q 031797 62 SFTVWDVGGQDKIRPLWRHYF--------QNTQGLIFVVDSNDRDRVVEARDE----LHRMLNEDELRDAVLLVFANKQD 129 (153)
Q Consensus 62 ~~~i~d~~g~~~~~~~~~~~~--------~~~~~ii~v~d~~~~~s~~~~~~~----~~~~~~~~~~~~~~iivv~~K~D 129 (153)
.+.++|+|||.++-..+.... ...-++++++|+....+....... ..-.++ .+.|.+.|+||+|
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~----~~lP~vnvlsK~D 167 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLR----LELPHVNVLSKID 167 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHH----HTSEEEEEE--GG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhh----CCCCEEEeeeccC
Confidence 799999999977643333222 234577889997644333222221 122222 4799999999999
Q ss_pred cccc
Q 031797 130 LPNA 133 (153)
Q Consensus 130 l~~~ 133 (153)
+.++
T Consensus 168 l~~~ 171 (238)
T PF03029_consen 168 LLSK 171 (238)
T ss_dssp GS-H
T ss_pred cccc
Confidence 9873
No 292
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.11 E-value=1.6e-09 Score=81.06 Aligned_cols=78 Identities=27% Similarity=0.354 Sum_probs=53.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCccc-c--CCceeeEEEEEE------------------------EcCEEEEEEEcCC
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVT-T--IPTIGFNVETVE------------------------YKNISFTVWDVGG 70 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~-~--~~t~~~~~~~~~------------------------~~~~~~~i~d~~g 70 (153)
++|.++|.+++|||||+|++.+.+... . ..|......... .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 689999999999999999999876532 1 122222222211 1226789999999
Q ss_pred C----CCchh---chHhhhcCCCEEEEEEECC
Q 031797 71 Q----DKIRP---LWRHYFQNTQGLIFVVDSN 95 (153)
Q Consensus 71 ~----~~~~~---~~~~~~~~~~~ii~v~d~~ 95 (153)
. ..... .....++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 22222 3444589999999999996
No 293
>PRK13768 GTPase; Provisional
Probab=99.10 E-value=1.5e-10 Score=81.95 Aligned_cols=80 Identities=16% Similarity=0.143 Sum_probs=48.2
Q ss_pred EEEEEEEcCCCCCc---hhchHhh---hcC--CCEEEEEEECCCcccHHHHHH-HHHHHHcCCCCCCceEEEEEeCCCcc
Q 031797 61 ISFTVWDVGGQDKI---RPLWRHY---FQN--TQGLIFVVDSNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 61 ~~~~i~d~~g~~~~---~~~~~~~---~~~--~~~ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~iivv~~K~Dl~ 131 (153)
..+.+||+||+.+. +..+..+ +.. .+++++++|+........... ++....... ..+.|+++|+||+|+.
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLL 175 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhc
Confidence 47899999997553 2232222 222 789999999965433333222 222211110 1468999999999998
Q ss_pred ccCCHHHHHH
Q 031797 132 NAMNAAEITD 141 (153)
Q Consensus 132 ~~~~~~~~~~ 141 (153)
+..+.+++.+
T Consensus 176 ~~~~~~~~~~ 185 (253)
T PRK13768 176 SEEELERILK 185 (253)
T ss_pred CchhHHHHHH
Confidence 7765545444
No 294
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.09 E-value=1.1e-09 Score=79.63 Aligned_cols=123 Identities=20% Similarity=0.323 Sum_probs=77.9
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc-----------cCCceeeEEEEEEE--c--CEEEEEEEcCCCCCc---hh
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-----------TIPTIGFNVETVEY--K--NISFTVWDVGGQDKI---RP 76 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-----------~~~t~~~~~~~~~~--~--~~~~~i~d~~g~~~~---~~ 76 (153)
-..++|+++|++|.|||||+|++++..... ..++..+....... + ..++.++|+||-..+ ..
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 457999999999999999999998864321 12344444443333 2 368999999993221 11
Q ss_pred c-----------hHhhh--------------cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031797 77 L-----------WRHYF--------------QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 77 ~-----------~~~~~--------------~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~ 131 (153)
. ...++ ..+|+.+|.+..+ ...+..+.-....-+. ..+.+|-|+.|+|..
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Pt-gh~l~~~DIe~Mk~ls----~~vNlIPVI~KaD~l 175 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPT-GHGLKPLDIEAMKRLS----KRVNLIPVIAKADTL 175 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCC-CCCCCHHHHHHHHHHh----cccCeeeeeeccccC
Confidence 1 11111 1468889988865 3334444444444444 357799999999998
Q ss_pred ccCCHHHHHHH
Q 031797 132 NAMNAAEITDK 142 (153)
Q Consensus 132 ~~~~~~~~~~~ 142 (153)
...++..+.+.
T Consensus 176 T~~El~~~K~~ 186 (373)
T COG5019 176 TDDELAEFKER 186 (373)
T ss_pred CHHHHHHHHHH
Confidence 87665555544
No 295
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.09 E-value=2.2e-09 Score=79.73 Aligned_cols=130 Identities=21% Similarity=0.218 Sum_probs=79.2
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC----Ccc-------------cc--C---CceeeEE---EEEEE-----cCEEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG----EIV-------------TT--I---PTIGFNV---ETVEY-----KNISFT 64 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~----~~~-------------~~--~---~t~~~~~---~~~~~-----~~~~~~ 64 (153)
...+.|.++|+.++|||||+++|.+. ... .. - .|++..+ .-+.. -..++.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 34588999999999999999999876 322 11 1 1223222 22222 347899
Q ss_pred EEEcCCCC--------Cchh-----------------c----hHhhhc-CCCEEEEEE-ECC----CcccHHHHHHHHHH
Q 031797 65 VWDVGGQD--------KIRP-----------------L----WRHYFQ-NTQGLIFVV-DSN----DRDRVVEARDELHR 109 (153)
Q Consensus 65 i~d~~g~~--------~~~~-----------------~----~~~~~~-~~~~ii~v~-d~~----~~~s~~~~~~~~~~ 109 (153)
++||+|-. +-.. . ....++ .++..++|. |.+ .++.+......+..
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 99999821 1111 0 123344 788888888 764 12234455555555
Q ss_pred HHcCCCCCCceEEEEEeCCC-ccccC--CHHHHHHHhCCCc
Q 031797 110 MLNEDELRDAVLLVFANKQD-LPNAM--NAAEITDKLGLHS 147 (153)
Q Consensus 110 ~~~~~~~~~~~iivv~~K~D-l~~~~--~~~~~~~~~~~~~ 147 (153)
.+.. .+.|+++++||.| ..... ...++.++++.+.
T Consensus 175 eLk~---~~kPfiivlN~~dp~~~et~~l~~~l~eky~vpv 212 (492)
T TIGR02836 175 ELKE---LNKPFIILLNSTHPYHPETEALRQELEEKYDVPV 212 (492)
T ss_pred HHHh---cCCCEEEEEECcCCCCchhHHHHHHHHHHhCCce
Confidence 5555 5799999999999 43322 2446667777653
No 296
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.08 E-value=1.4e-09 Score=76.40 Aligned_cols=121 Identities=18% Similarity=0.229 Sum_probs=75.0
Q ss_pred hcccccccEEEEEcCCCCcHHHHHHHHhcC---C-cc-------------ccCCceeeEE-----------------EEE
Q 031797 11 KLFAKKEMRILMVGLDAAGKTTILYKLKLG---E-IV-------------TTIPTIGFNV-----------------ETV 56 (153)
Q Consensus 11 ~~~~~~~~~i~i~G~~~~GKtsli~~~~~~---~-~~-------------~~~~t~~~~~-----------------~~~ 56 (153)
+....++..|+++|..|+|||||.+|+... + .+ ......++.. ..+
T Consensus 13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~ 92 (366)
T KOG1532|consen 13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIV 92 (366)
T ss_pred cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchh
Confidence 345567889999999999999999999531 1 10 0111111110 000
Q ss_pred -------------------EEcCEEEEEEEcCCCCC-ch------hchHhhhc-CCCEEEEEEECC---CcccHHHHHHH
Q 031797 57 -------------------EYKNISFTVWDVGGQDK-IR------PLWRHYFQ-NTQGLIFVVDSN---DRDRVVEARDE 106 (153)
Q Consensus 57 -------------------~~~~~~~~i~d~~g~~~-~~------~~~~~~~~-~~~~ii~v~d~~---~~~s~~~~~~~ 106 (153)
........++||||+-+ |. .....+.. ..-+++|++|.. ++..|....-+
T Consensus 93 TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlY 172 (366)
T KOG1532|consen 93 TSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLY 172 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHH
Confidence 01235688999999743 21 11111111 235677899964 45566666666
Q ss_pred HHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 107 LHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 107 ~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
...++.+ .++|.+++.||.|+.+..
T Consensus 173 AcSilyk---tklp~ivvfNK~Dv~d~~ 197 (366)
T KOG1532|consen 173 ACSILYK---TKLPFIVVFNKTDVSDSE 197 (366)
T ss_pred HHHHHHh---ccCCeEEEEecccccccH
Confidence 6666666 689999999999998864
No 297
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=1.2e-09 Score=84.62 Aligned_cols=112 Identities=17% Similarity=0.173 Sum_probs=80.0
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccccCC----------------cee--eEEE--E-----EEEcCEEEEEEEcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP----------------TIG--FNVE--T-----VEYKNISFTVWDVG 69 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~----------------t~~--~~~~--~-----~~~~~~~~~i~d~~ 69 (153)
....++.++|+-++|||+|+..+....-++... ..+ +... + .+.+..-+++.|+|
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 566899999999999999999986543221100 001 1111 1 22255789999999
Q ss_pred CCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031797 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 70 g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~ 131 (153)
||-.|....-..++-+|++++++|+.+--.+ +....+...++ .+.|+++|+||+|..
T Consensus 206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVml-ntEr~ikhaiq----~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 206 GHVNFSDETTASLRLSDGVVLVVDVAEGVML-NTERIIKHAIQ----NRLPIVVVINKVDRL 262 (971)
T ss_pred CcccchHHHHHHhhhcceEEEEEEcccCcee-eHHHHHHHHHh----ccCcEEEEEehhHHH
Confidence 9999988888889999999999999753222 44455555544 479999999999964
No 298
>PTZ00258 GTP-binding protein; Provisional
Probab=99.02 E-value=1.9e-09 Score=80.22 Aligned_cols=81 Identities=21% Similarity=0.303 Sum_probs=57.9
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcc-cc--CCceeeEEEEEEEcC-----------------EEEEEEEcCCCCC-
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKN-----------------ISFTVWDVGGQDK- 73 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~-~~--~~t~~~~~~~~~~~~-----------------~~~~i~d~~g~~~- 73 (153)
.+.+++.++|.||+|||||+|++.+.+.. .. ..|.......+...+ ..+.+.|+||-..
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 56789999999999999999999876543 22 224455555555442 3489999999422
Q ss_pred ------chhchHhhhcCCCEEEEEEECC
Q 031797 74 ------IRPLWRHYFQNTQGLIFVVDSN 95 (153)
Q Consensus 74 ------~~~~~~~~~~~~~~ii~v~d~~ 95 (153)
........++.+|++++|+|..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 2223455678999999999974
No 299
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.02 E-value=1.6e-09 Score=88.87 Aligned_cols=97 Identities=20% Similarity=0.214 Sum_probs=65.7
Q ss_pred CcHHHHHHHHhcCCccccCC---ceeeEEEEEEEc------------------CEEEEEEEcCCCCCchhchHhhhcCCC
Q 031797 28 AGKTTILYKLKLGEIVTTIP---TIGFNVETVEYK------------------NISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (153)
Q Consensus 28 ~GKtsli~~~~~~~~~~~~~---t~~~~~~~~~~~------------------~~~~~i~d~~g~~~~~~~~~~~~~~~~ 86 (153)
++||||+.++.+.......+ |..+-.+.+... -..+.+||||||+.|........+.+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 45999999998876543221 222222222221 123899999999999888777788899
Q ss_pred EEEEEEECCC---cccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 87 GLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 87 ~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
++++|+|+++ ++++..+ ..+.. .++|+++++||+|+..
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I-----~~lk~---~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAI-----NILRQ---YKTPFVVAANKIDLIP 592 (1049)
T ss_pred EEEEEEECcccCCHhHHHHH-----HHHHH---cCCCEEEEEECCCCcc
Confidence 9999999975 3333222 22222 3589999999999963
No 300
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.01 E-value=1.4e-09 Score=77.54 Aligned_cols=76 Identities=24% Similarity=0.263 Sum_probs=53.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCccc---cCCceeeEEEEEEEcCE-----------------EEEEEEcCCCCC------
Q 031797 20 ILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGFNVETVEYKNI-----------------SFTVWDVGGQDK------ 73 (153)
Q Consensus 20 i~i~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~~-----------------~~~i~d~~g~~~------ 73 (153)
+.++|.|++|||||+|++.+.+... ...|.......+...+. .+.+.|+||-..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 4789999999999999999876532 23344555554444432 599999999422
Q ss_pred -chhchHhhhcCCCEEEEEEECC
Q 031797 74 -IRPLWRHYFQNTQGLIFVVDSN 95 (153)
Q Consensus 74 -~~~~~~~~~~~~~~ii~v~d~~ 95 (153)
........++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1223445578899999999874
No 301
>PRK09866 hypothetical protein; Provisional
Probab=99.01 E-value=1.2e-08 Score=79.57 Aligned_cols=69 Identities=16% Similarity=0.299 Sum_probs=45.8
Q ss_pred EEEEEEEcCCCCC-----chhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 61 ISFTVWDVGGQDK-----IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 61 ~~~~i~d~~g~~~-----~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
..+.+.||||-.. ........++++|+++||+|+.+.-+... ..+...+.... .+.|+++|+||+|+.+
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~-K~~PVILVVNKIDl~d 303 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVG-QSVPLYVLVNKFDQQD 303 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcC-CCCCEEEEEEcccCCC
Confidence 4678899999543 22234457899999999999976433322 23334443321 2369999999999865
No 302
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=5.6e-09 Score=76.32 Aligned_cols=122 Identities=17% Similarity=0.296 Sum_probs=76.8
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCcccc----------CCceeeEEEEEEE--c--CEEEEEEEcCCCCC-------c
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT----------IPTIGFNVETVEY--K--NISFTVWDVGGQDK-------I 74 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~----------~~t~~~~~~~~~~--~--~~~~~i~d~~g~~~-------~ 74 (153)
-.+.++++|++|.|||||+|+++...+... ..+..+....... + ..++++.||||... |
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 359999999999999999999987644321 1244444444433 2 36899999999221 1
Q ss_pred hh-------chHh-----------hhc--CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 75 RP-------LWRH-----------YFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 75 ~~-------~~~~-----------~~~--~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
+. .... .+. .+|+.+|.+..+.. .+.........-+. ..+++|-|+.|.|.....
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~----~~vNiIPVI~KaD~lT~~ 174 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS----KKVNLIPVIAKADTLTKD 174 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh----ccccccceeeccccCCHH
Confidence 11 1111 122 57888999886532 23334433344333 367899999999998876
Q ss_pred CHHHHHHH
Q 031797 135 NAAEITDK 142 (153)
Q Consensus 135 ~~~~~~~~ 142 (153)
+...+.+.
T Consensus 175 El~~~K~~ 182 (366)
T KOG2655|consen 175 ELNQFKKR 182 (366)
T ss_pred HHHHHHHH
Confidence 65555544
No 303
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=5.4e-09 Score=79.78 Aligned_cols=125 Identities=22% Similarity=0.220 Sum_probs=84.6
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC--------------------Ccc--------------ccCCceeeEEEEEEEcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG--------------------EIV--------------TTIPTIGFNVETVEYKN 60 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~--------------------~~~--------------~~~~t~~~~~~~~~~~~ 60 (153)
...++++++|..++|||||+-+++.. +.. +..-|..+....++-+.
T Consensus 175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~ 254 (603)
T KOG0458|consen 175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS 254 (603)
T ss_pred ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence 45689999999999999999988641 100 00113334445566678
Q ss_pred EEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcccHHH------HHHHHHHHHcCCCCCCceEEEEEeCCCccc--
Q 031797 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVE------ARDELHRMLNEDELRDAVLLVFANKQDLPN-- 132 (153)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~------~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~-- 132 (153)
..+.+.|.|||..|...+..-...+|+.++|+|++. ..|+. ..+....+++... -.-++|++||+|+.+
T Consensus 255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~-~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~Ws 331 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDAST-GEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLVSWS 331 (603)
T ss_pred eeEEEecCCCccccchhhhccccccceEEEEEECCc-chhhhccCCCCchHHHHHHHHHcC--cceEEEEeecccccCcc
Confidence 899999999999998888778888999999999873 33321 1223333344332 345899999999985
Q ss_pred cCCHHHHHHH
Q 031797 133 AMNAAEITDK 142 (153)
Q Consensus 133 ~~~~~~~~~~ 142 (153)
+...+++..+
T Consensus 332 q~RF~eIk~~ 341 (603)
T KOG0458|consen 332 QDRFEEIKNK 341 (603)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 304
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.95 E-value=2.6e-08 Score=69.77 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=42.7
Q ss_pred EEEEEEEcCCCCC-------------chhchHhhhcC-CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEe
Q 031797 61 ISFTVWDVGGQDK-------------IRPLWRHYFQN-TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126 (153)
Q Consensus 61 ~~~~i~d~~g~~~-------------~~~~~~~~~~~-~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~ 126 (153)
..+.++|+||-.. ...+...++++ .+.+++|+|+...-.-.... .+.+.+.. ...|+++|+|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l-~ia~~ld~---~~~rti~ViT 200 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDAL-KLAKEVDP---QGERTIGVIT 200 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHH-HHHHHHHH---cCCcEEEEEE
Confidence 5789999999632 12334566674 45788899875422211111 22222232 4688999999
Q ss_pred CCCcccc
Q 031797 127 KQDLPNA 133 (153)
Q Consensus 127 K~Dl~~~ 133 (153)
|.|..+.
T Consensus 201 K~D~~~~ 207 (240)
T smart00053 201 KLDLMDE 207 (240)
T ss_pred CCCCCCc
Confidence 9999764
No 305
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.95 E-value=5.1e-09 Score=77.17 Aligned_cols=78 Identities=22% Similarity=0.290 Sum_probs=55.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCcc-cc--CCceeeEEEEEEEcC-----------------EEEEEEEcCCCCC----
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKN-----------------ISFTVWDVGGQDK---- 73 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~-~~--~~t~~~~~~~~~~~~-----------------~~~~i~d~~g~~~---- 73 (153)
+++.++|.||+|||||+|++.+.+.. .. ..|.......+...+ ..+.+.|+||-..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 68999999999999999999987632 12 234444444444433 3589999999432
Q ss_pred ---chhchHhhhcCCCEEEEEEECC
Q 031797 74 ---IRPLWRHYFQNTQGLIFVVDSN 95 (153)
Q Consensus 74 ---~~~~~~~~~~~~~~ii~v~d~~ 95 (153)
........++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1223445578999999999984
No 306
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=5.4e-09 Score=74.14 Aligned_cols=127 Identities=20% Similarity=0.236 Sum_probs=80.3
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC-------Ccc-----ccC-------CceeeEEEEEEEcCEEEEEEEcCCCCCch
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG-------EIV-----TTI-------PTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~-------~~~-----~~~-------~t~~~~~~~~~~~~~~~~i~d~~g~~~~~ 75 (153)
....||..+|.-+.|||||...+... .+. ... -|+......+...+.-....|+|||..|-
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv 89 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence 44689999999999999998887431 110 101 12222233455567888899999999997
Q ss_pred hchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCc-eEEEEEeCCCccccCC--------HHHHHHHhCCC
Q 031797 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA-VLLVFANKQDLPNAMN--------AAEITDKLGLH 146 (153)
Q Consensus 76 ~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~iivv~~K~Dl~~~~~--------~~~~~~~~~~~ 146 (153)
..+..-....|+.|+|+.+++-- +....+-+. +.++ -.+ -+++++||+|+.++.+ ..++..+++++
T Consensus 90 KNMItgAaqmDgAILVVsA~dGp-mPqTrEHiL-larq---vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~ 164 (394)
T COG0050 90 KNMITGAAQMDGAILVVAATDGP-MPQTREHIL-LARQ---VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFP 164 (394)
T ss_pred HHHhhhHHhcCccEEEEEcCCCC-CCcchhhhh-hhhh---cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCC
Confidence 66665566779999999987531 112222111 1112 244 4788899999998543 44455555555
No 307
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.90 E-value=7.8e-09 Score=68.09 Aligned_cols=55 Identities=20% Similarity=0.352 Sum_probs=37.6
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEE--EEEEEcCEEEEEEEcCC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYKNISFTVWDVGG 70 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~d~~g 70 (153)
.+.++++++|.+|+|||||+|++.+.......++.+... ..+.. +..+.++|+||
T Consensus 100 ~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~liDtPG 156 (157)
T cd01858 100 KKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL-MKRIYLIDCPG 156 (157)
T ss_pred ccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc-CCCEEEEECcC
Confidence 356889999999999999999999876543333222221 12222 23588999998
No 308
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.88 E-value=8.7e-09 Score=68.89 Aligned_cols=55 Identities=22% Similarity=0.364 Sum_probs=38.2
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeE--EEEEEEcCEEEEEEEcCC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNISFTVWDVGG 70 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~i~d~~g 70 (153)
...++++++|.+|+|||||+|++.+.......+..+.. ...+.. +..+.++|+||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~-~~~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL-DKKVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe-CCCEEEEECcC
Confidence 44589999999999999999999987654322222222 222222 34689999998
No 309
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=1.2e-08 Score=78.26 Aligned_cols=120 Identities=17% Similarity=0.147 Sum_probs=77.1
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEEC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~ 94 (153)
+.++-+.++||+|.||||||.++...-.......+.--.+.+..+..++++..+|.. ..+.. ...+=+|.+++++|+
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~D--l~~mi-DvaKIaDLVlLlIdg 143 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPSD--LHQMI-DVAKIADLVLLLIDG 143 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeChHH--HHHHH-hHHHhhheeEEEecc
Confidence 456888899999999999999987653222222222234556678899999999943 22222 234568999999998
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-CHHHHHH
Q 031797 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITD 141 (153)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-~~~~~~~ 141 (153)
.-- |+--...+..++..+..| .|+.|+|..|+.... .+..+.+
T Consensus 144 nfG--fEMETmEFLnil~~HGmP--rvlgV~ThlDlfk~~stLr~~KK 187 (1077)
T COG5192 144 NFG--FEMETMEFLNILISHGMP--RVLGVVTHLDLFKNPSTLRSIKK 187 (1077)
T ss_pred ccC--ceehHHHHHHHHhhcCCC--ceEEEEeecccccChHHHHHHHH
Confidence 632 322233344555554433 377899999997654 3444444
No 310
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.83 E-value=1.3e-08 Score=65.82 Aligned_cols=52 Identities=23% Similarity=0.288 Sum_probs=36.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCccccC--CceeeEEEEEEEcCEEEEEEEcCCC
Q 031797 19 RILMVGLDAAGKTTILYKLKLGEIVTTI--PTIGFNVETVEYKNISFTVWDVGGQ 71 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~i~d~~g~ 71 (153)
+++++|.+|+|||||+|++.+....... +..+.....+...+ .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence 8999999999999999999987754222 21222223333333 6899999995
No 311
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=3.8e-08 Score=73.16 Aligned_cols=119 Identities=17% Similarity=0.073 Sum_probs=84.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCcc------ccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEE
Q 031797 19 RILMVGLDAAGKTTILYKLKLGEIV------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 92 (153)
-|.-+|+-..|||||+..+.+.... ....|.+..+......+..+.++|.||++++-......+...|..++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 4677899999999999999876533 1234666666777777889999999999999888888888999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHH
Q 031797 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITD 141 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~ 141 (153)
+.++- ..........++.... ....++|+||+|..+....++..+
T Consensus 82 ~~deG--l~~qtgEhL~iLdllg--i~~giivltk~D~~d~~r~e~~i~ 126 (447)
T COG3276 82 AADEG--LMAQTGEHLLILDLLG--IKNGIIVLTKADRVDEARIEQKIK 126 (447)
T ss_pred eCccC--cchhhHHHHHHHHhcC--CCceEEEEeccccccHHHHHHHHH
Confidence 99542 2222222223333321 233699999999998654443333
No 312
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=1.5e-09 Score=80.36 Aligned_cols=130 Identities=19% Similarity=0.152 Sum_probs=91.5
Q ss_pred ccccccEEEEEcCCCCcHHHHHHHHhcCC-----------------ccc----cCCceeeEEEEEEEcCEEEEEEEcCCC
Q 031797 13 FAKKEMRILMVGLDAAGKTTILYKLKLGE-----------------IVT----TIPTIGFNVETVEYKNISFTVWDVGGQ 71 (153)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~-----------------~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~ 71 (153)
...+-.+|.++..-.+||||...|++... |.. ..-|.......+++++.++.++|+|||
T Consensus 33 ~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpgh 112 (753)
T KOG0464|consen 33 AIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGH 112 (753)
T ss_pred chhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCc
Confidence 33556889999999999999999986421 000 011223333567789999999999999
Q ss_pred CCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc---CCHHHHHHHhCCCc
Q 031797 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA---MNAAEITDKLGLHS 147 (153)
Q Consensus 72 ~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~---~~~~~~~~~~~~~~ 147 (153)
..|+-....+++-.|+++.|||++.--.. .....|... .+.++|-++++||+|.... ...+.+.++++..-
T Consensus 113 vdf~leverclrvldgavav~dasagve~-qtltvwrqa----dk~~ip~~~finkmdk~~anfe~avdsi~ekl~ak~ 186 (753)
T KOG0464|consen 113 VDFRLEVERCLRVLDGAVAVFDASAGVEA-QTLTVWRQA----DKFKIPAHCFINKMDKLAANFENAVDSIEEKLGAKA 186 (753)
T ss_pred ceEEEEHHHHHHHhcCeEEEEeccCCccc-ceeeeehhc----cccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCCce
Confidence 99999999999999999999998642111 122233332 3357999999999998643 34566666666543
No 313
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.79 E-value=9.2e-08 Score=66.69 Aligned_cols=88 Identities=15% Similarity=0.232 Sum_probs=64.9
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCcc--cc-CCceeeEEEEEEEcCEEEEEEEcCCCCCc-------hhchHhhhc
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEYKNISFTVWDVGGQDKI-------RPLWRHYFQ 83 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~d~~g~~~~-------~~~~~~~~~ 83 (153)
.+..-+|+++|-|.+|||||+..+...... .+ +.|.......+.+++..+++.|.||--+- ..+.-+..+
T Consensus 59 KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavAr 138 (364)
T KOG1486|consen 59 KSGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVAR 138 (364)
T ss_pred ccCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEee
Confidence 456689999999999999999999775533 22 34555556778899999999999983211 222334567
Q ss_pred CCCEEEEEEECCCcccHH
Q 031797 84 NTQGLIFVVDSNDRDRVV 101 (153)
Q Consensus 84 ~~~~ii~v~d~~~~~s~~ 101 (153)
.+|.+++|+|++..+.-.
T Consensus 139 taDlilMvLDatk~e~qr 156 (364)
T KOG1486|consen 139 TADLILMVLDATKSEDQR 156 (364)
T ss_pred cccEEEEEecCCcchhHH
Confidence 899999999998654433
No 314
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.79 E-value=7.1e-08 Score=69.48 Aligned_cols=86 Identities=20% Similarity=0.268 Sum_probs=59.4
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEc------CEEEEEEEcCCCCCchhchHhhhcCC---
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK------NISFTVWDVGGQDKIRPLWRHYFQNT--- 85 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~------~~~~~i~d~~g~~~~~~~~~~~~~~~--- 85 (153)
+..-+|+++|..++|||||+.++.+.+ ...+-.+..|..++.. -.++.+|-..|......+....+...
T Consensus 50 psgk~VlvlGdn~sGKtsLi~klqg~e--~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~a 127 (473)
T KOG3905|consen 50 PSGKNVLVLGDNGSGKTSLISKLQGSE--TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLA 127 (473)
T ss_pred CCCCeEEEEccCCCchhHHHHHhhccc--ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCcc
Confidence 456899999999999999999998765 3334455555555442 26888998888765555554444432
Q ss_pred -CEEEEEEECCCcccHHH
Q 031797 86 -QGLIFVVDSNDRDRVVE 102 (153)
Q Consensus 86 -~~ii~v~d~~~~~s~~~ 102 (153)
..+|++.|++++..+.+
T Consensus 128 etlviltasms~Pw~~le 145 (473)
T KOG3905|consen 128 ETLVILTASMSNPWTLLE 145 (473)
T ss_pred ceEEEEEEecCCcHHHHH
Confidence 34677899999854433
No 315
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=6.2e-08 Score=70.86 Aligned_cols=118 Identities=19% Similarity=0.192 Sum_probs=75.7
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCccc----cCCceeeEEEEEEE---------------------------------
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEY--------------------------------- 58 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~----~~~t~~~~~~~~~~--------------------------------- 58 (153)
..--|+++|+=..||||||+.++...++. ..||+..-...+..
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 34569999999999999999999887652 33444322211111
Q ss_pred -----c---CEEEEEEEcCCCCC-----------chhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCc
Q 031797 59 -----K---NISFTVWDVGGQDK-----------IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA 119 (153)
Q Consensus 59 -----~---~~~~~i~d~~g~~~-----------~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 119 (153)
+ =..++++|+||--+ |.....=+...+|.++++||....+--.+..+.+..+ ....-
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aL----kG~Ed 212 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDAL----KGHED 212 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHh----hCCcc
Confidence 0 04689999999322 2333444567899999999986443222333333332 23456
Q ss_pred eEEEEEeCCCccccCCHH
Q 031797 120 VLLVFANKQDLPNAMNAA 137 (153)
Q Consensus 120 ~iivv~~K~Dl~~~~~~~ 137 (153)
.+-||+||.|..+.+++.
T Consensus 213 kiRVVLNKADqVdtqqLm 230 (532)
T KOG1954|consen 213 KIRVVLNKADQVDTQQLM 230 (532)
T ss_pred eeEEEeccccccCHHHHH
Confidence 789999999998765543
No 316
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.76 E-value=7.9e-08 Score=66.55 Aligned_cols=122 Identities=17% Similarity=0.271 Sum_probs=73.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCccc----------cCCceeeEEEE--EEEcC--EEEEEEEcCCCCCc---h----
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGEIVT----------TIPTIGFNVET--VEYKN--ISFTVWDVGGQDKI---R---- 75 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~~~~----------~~~t~~~~~~~--~~~~~--~~~~i~d~~g~~~~---~---- 75 (153)
.++|+++|.+|.||||++|+++..+... ...|.++.... +..++ .++.++||||-... .
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence 5999999999999999999997654321 12244444432 33343 57889999993221 1
Q ss_pred -------hchHhhhc--------------CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 76 -------PLWRHYFQ--------------NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 76 -------~~~~~~~~--------------~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
.++..+++ .+++.+|.+..+.. ++..+.-.+..-+.+ -+.|+-|+-|.|...-+
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~----vvNvvPVIakaDtlTle 200 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTE----VVNVVPVIAKADTLTLE 200 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhh----hheeeeeEeecccccHH
Confidence 11122222 36778888876532 232222222211121 25588899999998777
Q ss_pred CHHHHHHHh
Q 031797 135 NAAEITDKL 143 (153)
Q Consensus 135 ~~~~~~~~~ 143 (153)
+..+|.+.+
T Consensus 201 Er~~FkqrI 209 (336)
T KOG1547|consen 201 ERSAFKQRI 209 (336)
T ss_pred HHHHHHHHH
Confidence 766666654
No 317
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=7e-08 Score=66.88 Aligned_cols=112 Identities=29% Similarity=0.414 Sum_probs=74.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCcccc-----CCceeeEEEEEEEcCEEEEEEEcCCCCCc-hh--chHhhhcCCCEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEYKNISFTVWDVGGQDKI-RP--LWRHYFQNTQGLI 89 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~~-----~~t~~~~~~~~~~~~~~~~i~d~~g~~~~-~~--~~~~~~~~~~~ii 89 (153)
-+|+++|-..+||||+-+-.+.. ..+. ..|..+....+...-.++++||.||+-.+ .+ -....++++.+.+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhk-MsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred ceEEEEeecccCcchhhheeeec-cCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 45999999999999977655433 2111 11222222233335578999999998654 22 2566789999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCC--CCCCceEEEEEeCCCccc
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~iivv~~K~Dl~~ 132 (153)
||+|+. +.+.+....+...+.+. .++++.+-++++|.|...
T Consensus 107 fvIDaQ--ddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLs 149 (347)
T KOG3887|consen 107 FVIDAQ--DDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLS 149 (347)
T ss_pred EEEech--HHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCc
Confidence 999984 33555555444444433 447888999999999754
No 318
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.74 E-value=1.2e-08 Score=63.49 Aligned_cols=101 Identities=21% Similarity=0.215 Sum_probs=63.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcCEEEEEEEcCCC----CCchhchHhhhcCCCEEEEEEE
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ----DKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~----~~~~~~~~~~~~~~~~ii~v~d 93 (153)
-++.++|+.|.|||||.+++.+..... ..|..+++ +.+ -.+|+||. ..+.........++|++++|-.
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~ly-kKTQAve~---~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~ 73 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLY-KKTQAVEF---NDK----GDIDTPGEYFEHPRWYHALITTLQDADVIIYVHA 73 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhh-cccceeec---cCc----cccCCchhhhhhhHHHHHHHHHhhccceeeeeec
Confidence 378999999999999999998764321 11111111 111 13588983 3333334455678999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
++++.+.- ...+..+ ...|+|-+.+|.|+..+.
T Consensus 74 and~~s~f--~p~f~~~------~~k~vIgvVTK~DLaed~ 106 (148)
T COG4917 74 ANDPESRF--PPGFLDI------GVKKVIGVVTKADLAEDA 106 (148)
T ss_pred ccCccccC--Ccccccc------cccceEEEEecccccchH
Confidence 98765431 1111111 234599999999999544
No 319
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=1.2e-08 Score=80.02 Aligned_cols=109 Identities=21% Similarity=0.183 Sum_probs=75.0
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc--c---CCceeeEEE----------------EEEEcCEEEEEEEcCCCCC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT--T---IPTIGFNVE----------------TVEYKNISFTVWDVGGQDK 73 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~--~---~~t~~~~~~----------------~~~~~~~~~~i~d~~g~~~ 73 (153)
-+..-+||+|+-.+|||-|+..+.+...-. . ...++..+. ...++---+.++|+|||+.
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 345668999999999999999987643221 1 111111111 1122334688999999999
Q ss_pred chhchHhhhcCCCEEEEEEECCC---cccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031797 74 IRPLWRHYFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 74 ~~~~~~~~~~~~~~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~ 131 (153)
|..++.....-||.+|+|+|+-. ++..+. .++++. .+.|+||.+||+|..
T Consensus 553 FtnlRsrgsslC~~aIlvvdImhGlepqtiES-----i~lLR~---rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 553 FTNLRSRGSSLCDLAILVVDIMHGLEPQTIES-----INLLRM---RKTPFIVALNKIDRL 605 (1064)
T ss_pred hhhhhhccccccceEEEEeehhccCCcchhHH-----HHHHHh---cCCCeEEeehhhhhh
Confidence 99999888889999999999842 222221 223333 689999999999974
No 320
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=7.4e-08 Score=69.92 Aligned_cols=114 Identities=19% Similarity=0.181 Sum_probs=68.2
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCC----ccccC--Ccee----eEEEEEEE---------cCEEEEEEEcCCCCCc
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGE----IVTTI--PTIG----FNVETVEY---------KNISFTVWDVGGQDKI 74 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~----~~~~~--~t~~----~~~~~~~~---------~~~~~~i~d~~g~~~~ 74 (153)
.+.++++.++|.-.+|||||.+++..-. |.... .+.+ .-+..+.. ....+.+.|+|||...
T Consensus 4 ~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL 83 (522)
T KOG0461|consen 4 PPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL 83 (522)
T ss_pred CCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH
Confidence 3567999999999999999999986432 21111 1111 11222222 2356799999999876
Q ss_pred hhchHhhhcCCCEEEEEEECCCcccHHHHHHH-HHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDE-LHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 75 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~-~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
-.......+-.|..++|+|+..--.-+...-. +... .....++|+||+|.-.+
T Consensus 84 IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~------~c~klvvvinkid~lpE 137 (522)
T KOG0461|consen 84 IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL------LCKKLVVVINKIDVLPE 137 (522)
T ss_pred HHHHHhhhheeeeeeEEEehhcccccccchhhhhhhh------hccceEEEEeccccccc
Confidence 55544444556888999998632111111111 1111 23457888888887543
No 321
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.70 E-value=7.1e-08 Score=63.37 Aligned_cols=56 Identities=25% Similarity=0.331 Sum_probs=40.0
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEE-EEEEcCEEEEEEEcCC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-TVEYKNISFTVWDVGG 70 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~i~d~~g 70 (153)
....+++++|.+++||||+++++.+.......++.+.... .+...+..+.+||+||
T Consensus 99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpG 155 (156)
T cd01859 99 GKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLDTPG 155 (156)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence 3567899999999999999999997665444444443322 2222344799999998
No 322
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.70 E-value=1e-07 Score=71.57 Aligned_cols=86 Identities=28% Similarity=0.497 Sum_probs=71.3
Q ss_pred CceeeEEEEEEE-cCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCc----------ccHHHHHHHHHHHHcCCC
Q 031797 47 PTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------DRVVEARDELHRMLNEDE 115 (153)
Q Consensus 47 ~t~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~ 115 (153)
.|.|+....+.. .+..+.++|++|+...+..|..++.++++++||+++++- ..+.+....+..+++...
T Consensus 221 ~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~ 300 (389)
T PF00503_consen 221 KTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPW 300 (389)
T ss_dssp --SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGG
T ss_pred CCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcc
Confidence 366777788888 999999999999999999999999999999999997532 346777788888888766
Q ss_pred CCCceEEEEEeCCCccc
Q 031797 116 LRDAVLLVFANKQDLPN 132 (153)
Q Consensus 116 ~~~~~iivv~~K~Dl~~ 132 (153)
..+.|+++++||.|+..
T Consensus 301 ~~~~~iil~lnK~D~f~ 317 (389)
T PF00503_consen 301 FKNTPIILFLNKIDLFE 317 (389)
T ss_dssp GTTSEEEEEEE-HHHHH
T ss_pred cccCceEEeeecHHHHH
Confidence 67899999999999854
No 323
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.69 E-value=2.3e-07 Score=70.84 Aligned_cols=86 Identities=20% Similarity=0.336 Sum_probs=62.8
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEc------CEEEEEEEcCCCCCchhchHhhhcCC---
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK------NISFTVWDVGGQDKIRPLWRHYFQNT--- 85 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~------~~~~~i~d~~g~~~~~~~~~~~~~~~--- 85 (153)
.....|+|+|..++|||||+.+|.+.+ ...++.+..|...+.. ..++.+|...|...+..+....+...
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e--~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~ 100 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIE--DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP 100 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccC--CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence 456899999999999999999987653 3445667777665542 25899999988777766665555432
Q ss_pred -CEEEEEEECCCcccHHH
Q 031797 86 -QGLIFVVDSNDRDRVVE 102 (153)
Q Consensus 86 -~~ii~v~d~~~~~s~~~ 102 (153)
-.+++|+|.+.|..+.+
T Consensus 101 ~t~vvIvlDlS~PW~~~e 118 (472)
T PF05783_consen 101 NTLVVIVLDLSKPWNIME 118 (472)
T ss_pred ceEEEEEecCCChHHHHH
Confidence 45788999998876543
No 324
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.69 E-value=1.4e-07 Score=69.13 Aligned_cols=75 Identities=16% Similarity=0.147 Sum_probs=44.2
Q ss_pred cCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCC---
Q 031797 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--- 135 (153)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~--- 135 (153)
.+..+.++||+|...-... ....+|.++++.+....+....... ..+ ...-++|+||.|+.....
T Consensus 147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~------E~aDIiVVNKaDl~~~~~a~~ 214 (332)
T PRK09435 147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIM------ELADLIVINKADGDNKTAARR 214 (332)
T ss_pred cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhh------hhhheEEeehhcccchhHHHH
Confidence 3578999999997533222 4567999999976333333333222 111 122389999999876443
Q ss_pred -HHHHHHHhCC
Q 031797 136 -AAEITDKLGL 145 (153)
Q Consensus 136 -~~~~~~~~~~ 145 (153)
..++.+.+.+
T Consensus 215 ~~~el~~~L~l 225 (332)
T PRK09435 215 AAAEYRSALRL 225 (332)
T ss_pred HHHHHHHHHhc
Confidence 3344444443
No 325
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.67 E-value=5.6e-08 Score=65.95 Aligned_cols=54 Identities=22% Similarity=0.351 Sum_probs=36.3
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCcc----------ccCCceeeEEEEEEEcCEEEEEEEcCC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEIV----------TTIPTIGFNVETVEYKNISFTVWDVGG 70 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~~----------~~~~t~~~~~~~~~~~~~~~~i~d~~g 70 (153)
+..+++++|.+|+|||||+|++.+.... ...+.+......+.... .+.++||||
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~DtPG 189 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN-GKKLYDTPG 189 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC-CCEEEeCcC
Confidence 4578999999999999999999875421 12222222223333332 689999998
No 326
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.66 E-value=1.1e-07 Score=63.43 Aligned_cols=56 Identities=18% Similarity=0.386 Sum_probs=39.2
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcccc--CCceeeEEEEEEEcCEEEEEEEcCCC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQ 71 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~i~d~~g~ 71 (153)
...++++++|.+|+|||||++++.+...... .+........+... ..+.++||||-
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-CCEEEEECCCC
Confidence 4457999999999999999999998765322 22222223333333 56899999994
No 327
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.64 E-value=1.3e-07 Score=68.27 Aligned_cols=56 Identities=20% Similarity=0.363 Sum_probs=39.0
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceee--EEEEEEEcCEEEEEEEcCCC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF--NVETVEYKNISFTVWDVGGQ 71 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~i~d~~g~ 71 (153)
...++++++|.+|+||||++|++.+.+.....+..+. ....+.. +..+.++||||-
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL-GKGLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe-CCcEEEEECCCc
Confidence 4568999999999999999999998765332222222 2222332 346889999995
No 328
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.63 E-value=1.2e-07 Score=69.49 Aligned_cols=61 Identities=21% Similarity=0.231 Sum_probs=42.3
Q ss_pred hcccccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEE-cCEEEEEEEcCCC
Q 031797 11 KLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-KNISFTVWDVGGQ 71 (153)
Q Consensus 11 ~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~d~~g~ 71 (153)
........+++++|-+||||||+||++.+.......+..|..-..... -+..+.++||||-
T Consensus 126 ~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGi 187 (322)
T COG1161 126 KGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGI 187 (322)
T ss_pred cCCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCCeEEecCCCc
Confidence 333455688999999999999999999998765433333443322222 2334899999994
No 329
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=1.7e-07 Score=73.79 Aligned_cols=112 Identities=16% Similarity=0.150 Sum_probs=76.7
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCC------------cc---ccCCceeeEE--EEEEE--cCEEEEEEEcCCCCCc
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGE------------IV---TTIPTIGFNV--ETVEY--KNISFTVWDVGGQDKI 74 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~------------~~---~~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~ 74 (153)
.+...+++++.+-..|||||+.+++... |. +...+.++.- ..+.. ++..++++|+|||-.|
T Consensus 6 ~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf 85 (887)
T KOG0467|consen 6 SEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDF 85 (887)
T ss_pred CCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccch
Confidence 4567899999999999999999996432 11 1122333322 22333 7889999999999999
Q ss_pred hhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCc
Q 031797 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (153)
Q Consensus 75 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl 130 (153)
.....+..+-+|+.++++|+.+--- ......++.... .+...++|+||+|.
T Consensus 86 ~sevssas~l~d~alvlvdvvegv~-~qt~~vlrq~~~----~~~~~~lvinkidr 136 (887)
T KOG0467|consen 86 SSEVSSASRLSDGALVLVDVVEGVC-SQTYAVLRQAWI----EGLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhhhcCCcEEEEeeccccc-hhHHHHHHHHHH----ccCceEEEEehhhh
Confidence 9888888899999999999853211 111122222211 24668999999993
No 330
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.60 E-value=1.4e-07 Score=67.76 Aligned_cols=56 Identities=18% Similarity=0.368 Sum_probs=38.5
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcccc--CCceeeEEEEEEEcCEEEEEEEcCCC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQ 71 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~i~d~~g~ 71 (153)
...++++++|.+|+|||||+|++.+.+.... .+........+... ..+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS-DGLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC-CCEEEEECCCc
Confidence 3568999999999999999999998764322 22111222233332 36899999996
No 331
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.59 E-value=2e-07 Score=65.37 Aligned_cols=84 Identities=31% Similarity=0.541 Sum_probs=59.4
Q ss_pred eeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcc----------cHHHHHHHHHHHHcCCCCCCc
Q 031797 50 GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD----------RVVEARDELHRMLNEDELRDA 119 (153)
Q Consensus 50 ~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~ 119 (153)
|+..+++.....+++.+|.+|+..-+..|-.+++++.++|||+..++-. .+.+....+..+-+..-+..+
T Consensus 191 GIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~ti 270 (379)
T KOG0099|consen 191 GIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTI 270 (379)
T ss_pred ceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhh
Confidence 4445566677889999999999999999999999999999998875422 223333333332222223457
Q ss_pred eEEEEEeCCCcccc
Q 031797 120 VLLVFANKQDLPNA 133 (153)
Q Consensus 120 ~iivv~~K~Dl~~~ 133 (153)
.+|+++||.|+...
T Consensus 271 svIlFLNKqDllae 284 (379)
T KOG0099|consen 271 SVILFLNKQDLLAE 284 (379)
T ss_pred heeEEecHHHHHHH
Confidence 79999999998643
No 332
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.56 E-value=7e-07 Score=66.10 Aligned_cols=78 Identities=18% Similarity=0.114 Sum_probs=56.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCc-cc-c--CCceeeEEEEEEEcC-----------------EEEEEEEcCCCCC---
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEI-VT-T--IPTIGFNVETVEYKN-----------------ISFTVWDVGGQDK--- 73 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~-~~-~--~~t~~~~~~~~~~~~-----------------~~~~i~d~~g~~~--- 73 (153)
+++.++|.|++|||||.+.+.+... .. + ..|...+...+...+ ..+.+.|.||-..
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 6899999999999999999988765 32 1 223444444444433 4689999998422
Q ss_pred ----chhchHhhhcCCCEEEEEEECC
Q 031797 74 ----IRPLWRHYFQNTQGLIFVVDSN 95 (153)
Q Consensus 74 ----~~~~~~~~~~~~~~ii~v~d~~ 95 (153)
........++.+|+++.|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 3345667789999999999975
No 333
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.55 E-value=2.6e-07 Score=60.68 Aligned_cols=53 Identities=17% Similarity=0.214 Sum_probs=37.7
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcc--cc--CCceeeEEEEEEEcCEEEEEEEcCC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TT--IPTIGFNVETVEYKNISFTVWDVGG 70 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~--~~--~~t~~~~~~~~~~~~~~~~i~d~~g 70 (153)
....+++++|.+|+||||++|++.+.... .. ..|...... .. +..+.++|+||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~--~~-~~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEV--KL-DNKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEE--Ee-cCCEEEEECCC
Confidence 56789999999999999999999986532 12 223333332 22 24689999998
No 334
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.54 E-value=1.4e-06 Score=63.28 Aligned_cols=65 Identities=11% Similarity=0.044 Sum_probs=39.9
Q ss_pred cCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCC
Q 031797 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (153)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~ 135 (153)
.+..+.++||+|..... ......+|.++++.... +-.++......+ .+.|.++++||+|+.....
T Consensus 125 ~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~ 189 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQGIKAGL------MEIADIYVVNKADGEGATN 189 (300)
T ss_pred CCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHHHHHHH------hhhccEEEEEcccccchhH
Confidence 35788999999854221 23466778888775432 222333322222 2467799999999986553
No 335
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=8.3e-07 Score=65.15 Aligned_cols=79 Identities=24% Similarity=0.344 Sum_probs=55.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCcc-ccCC--ceeeEEEEEEE------------------cCEEEEEEEcCC-----
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEY------------------KNISFTVWDVGG----- 70 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~~~-~~~~--t~~~~~~~~~~------------------~~~~~~i~d~~g----- 70 (153)
.+++.|+|-||||||||.|.+...... .+.| |++.+...... ....+.++|..|
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 468999999999999999999876532 2222 33333222211 225788999987
Q ss_pred --CCCchhchHhhhcCCCEEEEEEECC
Q 031797 71 --QDKIRPLWRHYFQNTQGLIFVVDSN 95 (153)
Q Consensus 71 --~~~~~~~~~~~~~~~~~ii~v~d~~ 95 (153)
.+.........+|.+|+++-|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 2344566778899999999999975
No 336
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=2.2e-07 Score=66.90 Aligned_cols=118 Identities=19% Similarity=0.107 Sum_probs=71.8
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccccCC------ce---------eeE--------E---EEEE------EcCEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP------TI---------GFN--------V---ETVE------YKNIS 62 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~------t~---------~~~--------~---~~~~------~~~~~ 62 (153)
....+|-++|+-..|||||...+.+-....... |+ ..+ + ..+. .--++
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 457899999999999999999997632111000 00 000 0 0011 01268
Q ss_pred EEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCC
Q 031797 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (153)
Q Consensus 63 ~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~ 135 (153)
+++.|.|||+-.-..+.+-..--|+.++|++++++..-.+..+-+..+ ... .-..++++-||+|+.+.+.
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Al-eIi--gik~iiIvQNKIDlV~~E~ 157 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMAL-EII--GIKNIIIVQNKIDLVSRER 157 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHH-hhh--ccceEEEEecccceecHHH
Confidence 999999999876555544444458999999998654332333222221 111 1245899999999987643
No 337
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=1.4e-07 Score=72.64 Aligned_cols=114 Identities=19% Similarity=0.156 Sum_probs=82.0
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCC-----cc------------c----cCCceeeEEEEEEEcCEEEEEEEcCCCCC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGE-----IV------------T----TIPTIGFNVETVEYKNISFTVWDVGGQDK 73 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~-----~~------------~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~ 73 (153)
.+..+|-+.-.-.+||||+-++++... +- + ..-|.....+.+.+.+.++.++|||||-.
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 456788999999999999999986531 00 0 01122233355677899999999999999
Q ss_pred chhchHhhhcCCCEEEEEEECCCcccHHHHH-HHHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 74 ~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
|.......++-.|+.++++|+.. ..+... ..|... .+ .++|-+.+.||+|.....
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~--GVqsQt~tV~rQ~-~r---y~vP~i~FiNKmDRmGa~ 172 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVA--GVESQTETVWRQM-KR---YNVPRICFINKMDRMGAS 172 (721)
T ss_pred EEEEehhhhhhccCeEEEEEccc--ceehhhHHHHHHH-Hh---cCCCeEEEEehhhhcCCC
Confidence 98888888999999999998742 233332 333333 33 479999999999987654
No 338
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.52 E-value=3.5e-06 Score=58.72 Aligned_cols=85 Identities=16% Similarity=0.103 Sum_probs=55.0
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC--Cccc----cCCceeeEEEEEEE---cCEEEEEEEcCCCCCchh------chHh
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG--EIVT----TIPTIGFNVETVEY---KNISFTVWDVGGQDKIRP------LWRH 80 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~--~~~~----~~~t~~~~~~~~~~---~~~~~~i~d~~g~~~~~~------~~~~ 80 (153)
+..-|.|+|+.++|||+|+|++++. .+.. ...|.++-...... .+..+.++|++|...... ....
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence 4466899999999999999999998 5541 13345544333333 357899999999543221 1222
Q ss_pred hhcC--CCEEEEEEECCCcccH
Q 031797 81 YFQN--TQGLIFVVDSNDRDRV 100 (153)
Q Consensus 81 ~~~~--~~~ii~v~d~~~~~s~ 100 (153)
.+.. ++.+||..+.......
T Consensus 86 ~l~~llss~~i~n~~~~~~~~~ 107 (224)
T cd01851 86 ALATLLSSVLIYNSWETILGDD 107 (224)
T ss_pred HHHHHHhCEEEEeccCcccHHH
Confidence 2333 7888888777644333
No 339
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.52 E-value=4.9e-07 Score=76.18 Aligned_cols=110 Identities=20% Similarity=0.245 Sum_probs=63.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCcccc-----CCceeeEE-EEEE-EcCEEEEEEEcCCC----C----CchhchHhhh--
Q 031797 20 ILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNV-ETVE-YKNISFTVWDVGGQ----D----KIRPLWRHYF-- 82 (153)
Q Consensus 20 i~i~G~~~~GKtsli~~~~~~~~~~~-----~~t~~~~~-~~~~-~~~~~~~i~d~~g~----~----~~~~~~~~~~-- 82 (153)
.+|+|++|+||||++.+. +-+++-. ..+.+... ..++ +-..+-.++|++|. + .....|..++
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~~ 192 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLGL 192 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCCEEEEcCCCccccCCCcccccHHHHHHHHHH
Confidence 689999999999999886 4444311 11111111 1122 12345669999982 1 1222343332
Q ss_pred -------cCCCEEEEEEECCCccc-----HH----HHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031797 83 -------QNTQGLIFVVDSNDRDR-----VV----EARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 83 -------~~~~~ii~v~d~~~~~s-----~~----~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~ 131 (153)
+..|++|+++|+.+.-. .. .+...+.++ ........||.+++||+|+.
T Consensus 193 L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el-~~~lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 193 LRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQEL-REQLGARFPVYLVLTKADLL 256 (1169)
T ss_pred HHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHH-HHHhCCCCCEEEEEecchhh
Confidence 35899999999854321 11 122222222 22333689999999999986
No 340
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.46 E-value=8e-08 Score=66.25 Aligned_cols=86 Identities=28% Similarity=0.519 Sum_probs=59.6
Q ss_pred ceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECC----------CcccHHHHHHHHHHHHcCCCCC
Q 031797 48 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRDRVVEARDELHRMLNEDELR 117 (153)
Q Consensus 48 t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~ 117 (153)
|+|+....++.....+.+.|.+|+..-+..|-.+++++-.++|++..+ +...+++....+.-++...-..
T Consensus 186 TTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~ 265 (359)
T KOG0085|consen 186 TTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQ 265 (359)
T ss_pred cccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhcccccc
Confidence 334444445556678889999999888888999999887777766543 3334445555555555443336
Q ss_pred CceEEEEEeCCCcccc
Q 031797 118 DAVLLVFANKQDLPNA 133 (153)
Q Consensus 118 ~~~iivv~~K~Dl~~~ 133 (153)
+.++|+++||.|+..+
T Consensus 266 nssVIlFLNKkDlLEe 281 (359)
T KOG0085|consen 266 NSSVILFLNKKDLLEE 281 (359)
T ss_pred CCceEEEechhhhhhh
Confidence 7889999999998643
No 341
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.45 E-value=1e-06 Score=62.87 Aligned_cols=82 Identities=16% Similarity=0.230 Sum_probs=50.6
Q ss_pred CEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-CHHH
Q 031797 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAE 138 (153)
Q Consensus 60 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-~~~~ 138 (153)
+..+.|++|-|....+. ...+-+|.++++.-.---+..+....-+.++- =++|+||.|....+ ...+
T Consensus 143 G~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia---------Di~vINKaD~~~A~~a~r~ 210 (323)
T COG1703 143 GYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEIA---------DIIVINKADRKGAEKAARE 210 (323)
T ss_pred CCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhhh---------heeeEeccChhhHHHHHHH
Confidence 56788888887543332 23466899988865544445555555555542 38999999976653 3445
Q ss_pred HHHHhCCCc--ccCCCC
Q 031797 139 ITDKLGLHS--LRQRHW 153 (153)
Q Consensus 139 ~~~~~~~~~--~~~~~~ 153 (153)
+...+.+.. .++..|
T Consensus 211 l~~al~~~~~~~~~~~W 227 (323)
T COG1703 211 LRSALDLLREVWRENGW 227 (323)
T ss_pred HHHHHHhhcccccccCC
Confidence 555555553 455554
No 342
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.44 E-value=1e-06 Score=62.22 Aligned_cols=114 Identities=16% Similarity=0.150 Sum_probs=67.1
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCccc--cCCceee-EEEEEEEcCEEEEEEEcCCC----------CCchhchHh
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIGF-NVETVEYKNISFTVWDVGGQ----------DKIRPLWRH 80 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~--~~~t~~~-~~~~~~~~~~~~~i~d~~g~----------~~~~~~~~~ 80 (153)
..+...+.+.|.+|+|||||++.+...+... ..+..+. .......-+..+.+.|.||- ..+......
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~ 212 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKS 212 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHH
Confidence 3566899999999999999999998755331 1112221 22222334568889999991 122222333
Q ss_pred hhc---CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 81 YFQ---NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 81 ~~~---~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
++- ..-.+++.+|++-+ +....-....++.+ .++|..+|+||+|...
T Consensus 213 Y~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k 262 (320)
T KOG2486|consen 213 YLLERENLVRVFLLVDASVP--IQPTDNPEIAWLGE---NNVPMTSVFTKCDKQK 262 (320)
T ss_pred HHHhhhhhheeeeeeeccCC--CCCCChHHHHHHhh---cCCCeEEeeehhhhhh
Confidence 322 23344556666432 22222222333334 5799999999999864
No 343
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=4.6e-07 Score=65.68 Aligned_cols=116 Identities=20% Similarity=0.188 Sum_probs=72.3
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC-------Cccc-----c-----CCceeeEEE--EEEEcCEEEEEEEcCCCCCchh
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG-------EIVT-----T-----IPTIGFNVE--TVEYKNISFTVWDVGGQDKIRP 76 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~-------~~~~-----~-----~~t~~~~~~--~~~~~~~~~~i~d~~g~~~~~~ 76 (153)
.+.+|--+|.-..|||||-..+..- ++.. . -.-+.++.. .+.-..+...=.|+|||..|-.
T Consensus 53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIK 132 (449)
T KOG0460|consen 53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIK 132 (449)
T ss_pred CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHH
Confidence 4589999999999999998887531 1110 0 111222333 3344556667779999998876
Q ss_pred chHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCC
Q 031797 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (153)
Q Consensus 77 ~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~ 135 (153)
.+-.-...-|+.|+|+.++|-. +....+-+.-. ++.. -..+++++||.|+.++.+
T Consensus 133 NMItGaaqMDGaILVVaatDG~-MPQTrEHlLLA-rQVG--V~~ivvfiNKvD~V~d~e 187 (449)
T KOG0460|consen 133 NMITGAAQMDGAILVVAATDGP-MPQTREHLLLA-RQVG--VKHIVVFINKVDLVDDPE 187 (449)
T ss_pred HhhcCccccCceEEEEEcCCCC-CcchHHHHHHH-HHcC--CceEEEEEecccccCCHH
Confidence 6655555679999999998642 22222222211 2221 234889999999996643
No 344
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.37 E-value=2.9e-06 Score=61.58 Aligned_cols=81 Identities=25% Similarity=0.367 Sum_probs=58.0
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcc-ccCC--ceeeEEEEEEEc-----------------CEEEEEEEcCCC---
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYK-----------------NISFTVWDVGGQ--- 71 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~-~~~~--t~~~~~~~~~~~-----------------~~~~~i~d~~g~--- 71 (153)
..+.++.|+|-|++|||||.|.+.+.... .+.| |++.+..++... ...++++|+.|.
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 46789999999999999999999887654 2333 444444443331 257899998872
Q ss_pred ----CCchhchHhhhcCCCEEEEEEECC
Q 031797 72 ----DKIRPLWRHYFQNTQGLIFVVDSN 95 (153)
Q Consensus 72 ----~~~~~~~~~~~~~~~~ii~v~d~~ 95 (153)
+.......+.+|.+|+++-|+++.
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEec
Confidence 233455677789999999888864
No 345
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.35 E-value=1.8e-06 Score=60.92 Aligned_cols=58 Identities=16% Similarity=0.166 Sum_probs=46.0
Q ss_pred CCchhchHhhhcCCCEEEEEEECCCcc-cHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 72 DKIRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 72 ~~~~~~~~~~~~~~~~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
+++..+...+++++|++++|+|++++. ++..+..|+... .. .++|+++|+||+|+.+.
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~-~~---~~i~~vIV~NK~DL~~~ 82 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVA-EA---QNIEPIIVLNKIDLLDD 82 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEECcccCCC
Confidence 556666667899999999999999877 787777766543 33 57899999999999654
No 346
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.34 E-value=3.4e-06 Score=55.68 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 031797 20 ILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 20 i~i~G~~~~GKtsli~~~~~~ 40 (153)
++++|+.|+|||||+++++..
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 679999999999999998764
No 347
>PRK12288 GTPase RsgA; Reviewed
Probab=98.34 E-value=1.1e-06 Score=65.03 Aligned_cols=54 Identities=15% Similarity=0.236 Sum_probs=34.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCcccc--C---------CceeeEEEEEEEcCEEEEEEEcCCCCCch
Q 031797 19 RILMVGLDAAGKTTILYKLKLGEIVTT--I---------PTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~~~~~--~---------~t~~~~~~~~~~~~~~~~i~d~~g~~~~~ 75 (153)
-++|+|.+|||||||+|+|++...... . .|..... +...+ ...++|+||-..+.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l--~~l~~-~~~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARL--YHFPH-GGDLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEE--EEecC-CCEEEECCCCCccc
Confidence 378999999999999999997643211 1 1222222 22221 22499999976553
No 348
>PRK12289 GTPase RsgA; Reviewed
Probab=98.31 E-value=2e-06 Score=63.65 Aligned_cols=23 Identities=17% Similarity=0.340 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 031797 19 RILMVGLDAAGKTTILYKLKLGE 41 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~ 41 (153)
.++|+|++|||||||+|++++..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcc
Confidence 48999999999999999998754
No 349
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.29 E-value=1.2e-05 Score=52.70 Aligned_cols=25 Identities=36% Similarity=0.585 Sum_probs=21.8
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
...++|.+.|+||+||||++.++..
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHH
Confidence 3468999999999999999998863
No 350
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=2e-05 Score=61.89 Aligned_cols=119 Identities=15% Similarity=0.322 Sum_probs=74.1
Q ss_pred hhcccccccEEEEEcCCCCcHHHHHHHHhcCCcccc--CCcee----------eEE------------------------
Q 031797 10 SKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIG----------FNV------------------------ 53 (153)
Q Consensus 10 ~~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~--~~t~~----------~~~------------------------ 53 (153)
.+.......||+|.|..++||||++|+++..+..+. .+++. ...
T Consensus 102 ~~~l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~ 181 (749)
T KOG0448|consen 102 DEVLARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALK 181 (749)
T ss_pred HHHHhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcC
Confidence 344557789999999999999999999987543211 11110 000
Q ss_pred ----------EEEEEc-------CEEEEEEEcCCCC---CchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcC
Q 031797 54 ----------ETVEYK-------NISFTVWDVGGQD---KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE 113 (153)
Q Consensus 54 ----------~~~~~~-------~~~~~i~d~~g~~---~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~ 113 (153)
..+.++ ...+.+.|.||-. ....-...+..++|++++|.++.+ .+......+...+.+
T Consensus 182 ~~~~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEn--tlt~sek~Ff~~vs~ 259 (749)
T KOG0448|consen 182 PDKDLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAEN--TLTLSEKQFFHKVSE 259 (749)
T ss_pred cccccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCcc--HhHHHHHHHHHHhhc
Confidence 011111 2368889999953 345556677789999999999854 343333333333232
Q ss_pred CCCCCceEEEEEeCCCcccc
Q 031797 114 DELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 114 ~~~~~~~iivv~~K~Dl~~~ 133 (153)
.+..|.++-||.|....
T Consensus 260 ---~KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 260 ---EKPNIFILNNKWDASAS 276 (749)
T ss_pred ---cCCcEEEEechhhhhcc
Confidence 25557778889898644
No 351
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.28 E-value=8.2e-07 Score=58.48 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGE 41 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~ 41 (153)
-.++++|++|||||||+|.+.+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 678999999999999999999864
No 352
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.26 E-value=1.2e-06 Score=61.48 Aligned_cols=119 Identities=16% Similarity=0.236 Sum_probs=65.2
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC------Cc-----cccCCce------------------eeEEEE----------
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG------EI-----VTTIPTI------------------GFNVET---------- 55 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~------~~-----~~~~~t~------------------~~~~~~---------- 55 (153)
.+.+.|.|.|+||+|||||++.+... +. .+..|-. +.....
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 35789999999999999999998531 10 0111111 111110
Q ss_pred ----------EEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEE
Q 031797 56 ----------VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFA 125 (153)
Q Consensus 56 ----------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~ 125 (153)
+...+..+.+++|-|...-+. ....-+|.+++|+-..--+..+....-+.++ .=++|.
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi---------aDi~vV 174 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAGIMEI---------ADIFVV 174 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH----------SEEEE
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhhhhhh---------ccEEEE
Confidence 111357888888887543322 2346789999998865444455545555554 238999
Q ss_pred eCCCccccC-CHHHHHHHhCC
Q 031797 126 NKQDLPNAM-NAAEITDKLGL 145 (153)
Q Consensus 126 ~K~Dl~~~~-~~~~~~~~~~~ 145 (153)
||.|..... ...++...+.+
T Consensus 175 NKaD~~gA~~~~~~l~~~l~l 195 (266)
T PF03308_consen 175 NKADRPGADRTVRDLRSMLHL 195 (266)
T ss_dssp E--SHHHHHHHHHHHHHHHHH
T ss_pred eCCChHHHHHHHHHHHHHHhh
Confidence 999976543 24444444433
No 353
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.24 E-value=1.9e-06 Score=61.06 Aligned_cols=121 Identities=17% Similarity=0.278 Sum_probs=76.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCcccc-----CCceeeEEEEEEEc----CEEEEEEEcCCC-------CCchh----
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEYK----NISFTVWDVGGQ-------DKIRP---- 76 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~-----~~t~~~~~~~~~~~----~~~~~i~d~~g~-------~~~~~---- 76 (153)
.++|+-+|..|.|||||+.+++|..+... .++......++... ..++.+.|+-|- ++|..
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy 121 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY 121 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence 58999999999999999999999887643 33444544454443 368899999882 22211
Q ss_pred ---chHhhh-------------c--CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHH
Q 031797 77 ---LWRHYF-------------Q--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE 138 (153)
Q Consensus 77 ---~~~~~~-------------~--~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~ 138 (153)
....++ . ..++.+|.+..+ --++..+.......+. .++.||-++-|.|.....++..
T Consensus 122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PT-GH~LKslDLvtmk~Ld----skVNIIPvIAKaDtisK~eL~~ 196 (406)
T KOG3859|consen 122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPT-GHSLKSLDLVTMKKLD----SKVNIIPVIAKADTISKEELKR 196 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCC-CcchhHHHHHHHHHHh----hhhhhHHHHHHhhhhhHHHHHH
Confidence 122222 2 345666666665 3345554444444433 3577888888999876665555
Q ss_pred HHHH
Q 031797 139 ITDK 142 (153)
Q Consensus 139 ~~~~ 142 (153)
+..+
T Consensus 197 FK~k 200 (406)
T KOG3859|consen 197 FKIK 200 (406)
T ss_pred HHHH
Confidence 5544
No 354
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.22 E-value=3.8e-06 Score=59.31 Aligned_cols=53 Identities=13% Similarity=0.164 Sum_probs=34.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCcccc-----------CCceeeEEEEEEEcCEEEEEEEcCCCCCc
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-----------IPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~~-----------~~t~~~~~~~~~~~~~~~~i~d~~g~~~~ 74 (153)
..++++|++|+|||||+|++.+...... ..|...... ...+ -.++|+||-..+
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~--~l~~--~~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELF--HFHG--GLIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEE--EcCC--cEEEeCCCcccc
Confidence 4789999999999999999987542211 122222222 2222 379999996543
No 355
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.19 E-value=3.4e-06 Score=62.81 Aligned_cols=55 Identities=16% Similarity=0.361 Sum_probs=36.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCc-----c--ccCCceeeEEEEEEEcCEEEEEEEcCCCC
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGEI-----V--TTIPTIGFNVETVEYKNISFTVWDVGGQD 72 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~~-----~--~~~~t~~~~~~~~~~~~~~~~i~d~~g~~ 72 (153)
..+++++|.+|+|||||+|++++... . ...|.+......+.. +..+.++||||-.
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~-~~~~~l~DtPG~~ 215 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL-DDGHSLYDTPGII 215 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe-CCCCEEEECCCCC
Confidence 46999999999999999999987432 1 122222222233333 2346799999954
No 356
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.19 E-value=8.7e-06 Score=55.59 Aligned_cols=79 Identities=11% Similarity=0.122 Sum_probs=41.1
Q ss_pred CEEEEEEEcCCCCCchhch----Hhhh--cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 60 NISFTVWDVGGQDKIRPLW----RHYF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 60 ~~~~~i~d~~g~~~~~~~~----~~~~--~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
+..+.++||+|........ ..++ -..+-+++|++++....-..........+. . ==+++||.|....
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~------~-~~lIlTKlDet~~ 155 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFG------I-DGLILTKLDETAR 155 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSS------T-CEEEEESTTSSST
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhccc------C-ceEEEEeecCCCC
Confidence 3679999999976543221 1111 156788999998754332222222222211 1 2567999998654
Q ss_pred C-CHHHHHHHhCC
Q 031797 134 M-NAAEITDKLGL 145 (153)
Q Consensus 134 ~-~~~~~~~~~~~ 145 (153)
. ..-.+..+.++
T Consensus 156 ~G~~l~~~~~~~~ 168 (196)
T PF00448_consen 156 LGALLSLAYESGL 168 (196)
T ss_dssp THHHHHHHHHHTS
T ss_pred cccceeHHHHhCC
Confidence 3 23344444443
No 357
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.14 E-value=5.5e-05 Score=58.48 Aligned_cols=79 Identities=16% Similarity=0.259 Sum_probs=54.3
Q ss_pred EEEEEEEcCCCC-------------CchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeC
Q 031797 61 ISFTVWDVGGQD-------------KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 127 (153)
Q Consensus 61 ~~~~i~d~~g~~-------------~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K 127 (153)
-+..+.|.||.. ........++++.+++|+|+- ..|.+.-......++....-.+..-|+|+||
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQ---DGSVDAERSnVTDLVsq~DP~GrRTIfVLTK 488 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQ---DGSVDAERSIVTDLVSQMDPHGRRTIFVLTK 488 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEec---cCCcchhhhhHHHHHHhcCCCCCeeEEEEee
Confidence 478899999921 224456788999999999973 3345555566666666655456778999999
Q ss_pred CCcccc--CCHHHHHHH
Q 031797 128 QDLPNA--MNAAEITDK 142 (153)
Q Consensus 128 ~Dl~~~--~~~~~~~~~ 142 (153)
.|+... .....+.+.
T Consensus 489 VDlAEknlA~PdRI~kI 505 (980)
T KOG0447|consen 489 VDLAEKNVASPSRIQQI 505 (980)
T ss_pred cchhhhccCCHHHHHHH
Confidence 999765 344444444
No 358
>PRK13796 GTPase YqeH; Provisional
Probab=98.13 E-value=5.9e-06 Score=61.61 Aligned_cols=54 Identities=15% Similarity=0.310 Sum_probs=34.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCc-------cccCCceeeEEEEEEEcCEEEEEEEcCCC
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGEI-------VTTIPTIGFNVETVEYKNISFTVWDVGGQ 71 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~i~d~~g~ 71 (153)
..+++++|.+|||||||+|++++... ....|-+......+...+ ...++||||-
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~-~~~l~DTPGi 220 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD-GSFLYDTPGI 220 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC-CcEEEECCCc
Confidence 46899999999999999999986431 112222222222333322 2479999995
No 359
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.13 E-value=2.9e-05 Score=55.91 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=33.3
Q ss_pred hHHHHHhhcccccccEEEEEcCCCCcHHHHHHHHhcCC
Q 031797 4 SFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGE 41 (153)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~ 41 (153)
.+..++..+...+.-+++++|++|.|||+++++|....
T Consensus 48 ~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~h 85 (302)
T PF05621_consen 48 RLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLH 85 (302)
T ss_pred HHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHC
Confidence 45667888888899999999999999999999998754
No 360
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.12 E-value=4.1e-05 Score=56.11 Aligned_cols=125 Identities=19% Similarity=0.249 Sum_probs=66.9
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC------Ccc--ccC--------------CceeeEEEEE-----------------
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG------EIV--TTI--------------PTIGFNVETV----------------- 56 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~------~~~--~~~--------------~t~~~~~~~~----------------- 56 (153)
...-++++|++|+||||++..+... +.. ... ...+......
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999888531 100 000 0011111110
Q ss_pred EEcCEEEEEEEcCCCCCchhc----hHhh--------hcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEE
Q 031797 57 EYKNISFTVWDVGGQDKIRPL----WRHY--------FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124 (153)
Q Consensus 57 ~~~~~~~~i~d~~g~~~~~~~----~~~~--------~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv 124 (153)
...+..+.++||||....... .... -...+..++|+|++... .... ........ --+.-+|
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~-~a~~f~~~----~~~~giI 265 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALS-QAKAFHEA----VGLTGII 265 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHH-HHHHHHhh----CCCCEEE
Confidence 013468999999997543211 1111 12467789999997432 2222 12222111 1234789
Q ss_pred EeCCCccccC-CHHHHHHHhCCCc
Q 031797 125 ANKQDLPNAM-NAAEITDKLGLHS 147 (153)
Q Consensus 125 ~~K~Dl~~~~-~~~~~~~~~~~~~ 147 (153)
+||.|....- ..-.++...++|.
T Consensus 266 lTKlD~t~~~G~~l~~~~~~~~Pi 289 (318)
T PRK10416 266 LTKLDGTAKGGVVFAIADELGIPI 289 (318)
T ss_pred EECCCCCCCccHHHHHHHHHCCCE
Confidence 9999965432 3445555555553
No 361
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.12 E-value=2.3e-06 Score=63.12 Aligned_cols=123 Identities=15% Similarity=0.109 Sum_probs=77.3
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCccc-----------------cCCceeeEEEEE--------------------
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-----------------TIPTIGFNVETV-------------------- 56 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-----------------~~~t~~~~~~~~-------------------- 56 (153)
.+.++.+...|+-++|||||.-.+.-++... .--+..+....+
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 4667899999999999999988876443210 001112221111
Q ss_pred ---EEcCEEEEEEEcCCCCCchhc--hHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031797 57 ---EYKNISFTVWDVGGQDKIRPL--WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 57 ---~~~~~~~~i~d~~g~~~~~~~--~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~ 131 (153)
.-.+.-+.+.|+.||+.|-.. ....-++.|..++++.+++- ...+.....-+.. ..+.|++++.||+|+.
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG--~~~~tkEHLgi~~---a~~lPviVvvTK~D~~ 268 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDG--VTKMTKEHLGIAL---AMELPVIVVVTKIDMV 268 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCC--cchhhhHhhhhhh---hhcCCEEEEEEecccC
Confidence 112356789999999998433 44455688999999988653 3222222222211 2579999999999998
Q ss_pred ccCCHHHHHH
Q 031797 132 NAMNAAEITD 141 (153)
Q Consensus 132 ~~~~~~~~~~ 141 (153)
+++..+...+
T Consensus 269 ~ddr~~~v~~ 278 (527)
T COG5258 269 PDDRFQGVVE 278 (527)
T ss_pred cHHHHHHHHH
Confidence 7765444433
No 362
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.11 E-value=2.4e-05 Score=59.23 Aligned_cols=109 Identities=21% Similarity=0.163 Sum_probs=60.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhc------CCcc-----ccC-----------CceeeEEEEEE-----------------
Q 031797 17 EMRILMVGLDAAGKTTILYKLKL------GEIV-----TTI-----------PTIGFNVETVE----------------- 57 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~------~~~~-----~~~-----------~t~~~~~~~~~----------------- 57 (153)
+.-|+++|++|+||||++..+.. .+.. .+. ...++......
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 56799999999999999988852 1110 000 00111111110
Q ss_pred EcCEEEEEEEcCCCCCchhch----Hhh--hcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031797 58 YKNISFTVWDVGGQDKIRPLW----RHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 58 ~~~~~~~i~d~~g~~~~~~~~----~~~--~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~ 131 (153)
..+..+.++||+|........ ... ....+-+++|+|+.-.+.-.+....+... -.+--+|+||.|..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~-------~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDS-------VDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhc-------cCCcEEEEECccCC
Confidence 024689999999965442221 111 12467889999986432222222222221 12457889999975
Q ss_pred c
Q 031797 132 N 132 (153)
Q Consensus 132 ~ 132 (153)
.
T Consensus 253 a 253 (429)
T TIGR01425 253 A 253 (429)
T ss_pred C
Confidence 3
No 363
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.09 E-value=9.3e-05 Score=49.36 Aligned_cols=81 Identities=16% Similarity=0.136 Sum_probs=46.5
Q ss_pred CEEEEEEEcCCCCCchhch----Hhh--hcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 60 NISFTVWDVGGQDKIRPLW----RHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 60 ~~~~~i~d~~g~~~~~~~~----~~~--~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
+..+.++|+||...+.... ... ....+.+++|+|.....+. ........... + ..-++.||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~---~~~~~~~~~~~---~-~~~viltk~D~~~~ 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDA---VNQAKAFNEAL---G-ITGVILTKLDGDAR 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHH---HHHHHHHHhhC---C-CCEEEEECCcCCCC
Confidence 4568899999975332211 111 1247999999998643322 23333332221 1 25677799998754
Q ss_pred C-CHHHHHHHhCCCc
Q 031797 134 M-NAAEITDKLGLHS 147 (153)
Q Consensus 134 ~-~~~~~~~~~~~~~ 147 (153)
. ....++...++|.
T Consensus 155 ~g~~~~~~~~~~~p~ 169 (173)
T cd03115 155 GGAALSIRAVTGKPI 169 (173)
T ss_pred cchhhhhHHHHCcCe
Confidence 3 3444777776664
No 364
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.09 E-value=1.5e-05 Score=57.63 Aligned_cols=57 Identities=18% Similarity=0.124 Sum_probs=35.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCccccC--C-------ceeeEEEEEEEcCEEEEEEEcCCCCCch
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVTTI--P-------TIGFNVETVEYKNISFTVWDVGGQDKIR 75 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~~~--~-------t~~~~~~~~~~~~~~~~i~d~~g~~~~~ 75 (153)
..++++|++|+|||||+|.+.+....... . .+......+.... ...++|+||...+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~-~~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG-GGLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC-CCEEEECCCCCccC
Confidence 67999999999999999999875432111 0 0111112222321 23689999986553
No 365
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.08 E-value=4.7e-05 Score=54.63 Aligned_cols=82 Identities=13% Similarity=0.111 Sum_probs=45.8
Q ss_pred cCEEEEEEEcCCCCCchhchH-------hhh-----cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEe
Q 031797 59 KNISFTVWDVGGQDKIRPLWR-------HYF-----QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126 (153)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~~-------~~~-----~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~ 126 (153)
.+..+.++|+||......... ... ...|.+++|+|++.. .... .......... -+--+++|
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~-~~~~~f~~~~----~~~g~IlT 225 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNAL-EQAKVFNEAV----GLTGIILT 225 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHH-HHHHHHHhhC----CCCEEEEE
Confidence 346899999999765432211 111 137899999999642 2222 2222222211 13578999
Q ss_pred CCCccccC-CHHHHHHHhCCCc
Q 031797 127 KQDLPNAM-NAAEITDKLGLHS 147 (153)
Q Consensus 127 K~Dl~~~~-~~~~~~~~~~~~~ 147 (153)
|.|..... ..-.+....++|.
T Consensus 226 KlDe~~~~G~~l~~~~~~~~Pi 247 (272)
T TIGR00064 226 KLDGTAKGGIILSIAYELKLPI 247 (272)
T ss_pred ccCCCCCccHHHHHHHHHCcCE
Confidence 99986543 3445555555543
No 366
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.07 E-value=1.4e-05 Score=53.68 Aligned_cols=76 Identities=17% Similarity=0.211 Sum_probs=45.5
Q ss_pred CEEEEEEEcCCCCCchhch--H---hhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 60 NISFTVWDVGGQDKIRPLW--R---HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 60 ~~~~~i~d~~g~~~~~~~~--~---~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
.....++++.|...-.... . ...-..+.++.|+|+.+..........+...+.... ++++||.|+.++.
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD------vIvlnK~D~~~~~ 157 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD------VIVLNKIDLVSDE 157 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S------EEEEE-GGGHHHH
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcC------EEEEeccccCChh
Confidence 3567788888854433330 0 011246889999999765445555566666666532 8999999998766
Q ss_pred -CHHHHHH
Q 031797 135 -NAAEITD 141 (153)
Q Consensus 135 -~~~~~~~ 141 (153)
..+.+.+
T Consensus 158 ~~i~~~~~ 165 (178)
T PF02492_consen 158 QKIERVRE 165 (178)
T ss_dssp --HHHHHH
T ss_pred hHHHHHHH
Confidence 3244443
No 367
>PRK00098 GTPase RsgA; Reviewed
Probab=98.04 E-value=1.5e-05 Score=57.90 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCC
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~ 41 (153)
...++++|++|+|||||+|++.+..
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCc
Confidence 4578999999999999999998754
No 368
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.02 E-value=7e-06 Score=56.00 Aligned_cols=76 Identities=18% Similarity=0.326 Sum_probs=41.8
Q ss_pred CEEEEEEEcCCCCCc-h--hchHhh---hcCC---CEEEEEEECC---Ccc-cHHHHHHHHHHHHcCCCCCCceEEEEEe
Q 031797 60 NISFTVWDVGGQDKI-R--PLWRHY---FQNT---QGLIFVVDSN---DRD-RVVEARDELHRMLNEDELRDAVLLVFAN 126 (153)
Q Consensus 60 ~~~~~i~d~~g~~~~-~--~~~~~~---~~~~---~~ii~v~d~~---~~~-s~~~~~~~~~~~~~~~~~~~~~iivv~~ 126 (153)
+....++|+|||-+. . ...+.. ++.. -+++|++|.. +.. -+......+..++. -.+|.|=|++
T Consensus 97 eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~----lE~P~INvls 172 (273)
T KOG1534|consen 97 EDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMIS----LEVPHINVLS 172 (273)
T ss_pred cCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHH----hcCcchhhhh
Confidence 357889999998543 1 222222 2222 3456666642 111 12333334444443 4789999999
Q ss_pred CCCccccCCHHHH
Q 031797 127 KQDLPNAMNAAEI 139 (153)
Q Consensus 127 K~Dl~~~~~~~~~ 139 (153)
|+|+......+++
T Consensus 173 KMDLlk~~~k~~l 185 (273)
T KOG1534|consen 173 KMDLLKDKNKKEL 185 (273)
T ss_pred HHHHhhhhhHHHH
Confidence 9999766433333
No 369
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.02 E-value=1.2e-05 Score=57.75 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 031797 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
.-.+++|++|||||||+|++...
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCch
Confidence 36889999999999999999763
No 370
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.02 E-value=0.00014 Score=54.35 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=21.4
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
.+.-.++++|++|+||||++..+..
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998864
No 371
>PRK14974 cell division protein FtsY; Provisional
Probab=98.00 E-value=6.4e-05 Score=55.42 Aligned_cols=80 Identities=20% Similarity=0.206 Sum_probs=42.6
Q ss_pred CEEEEEEEcCCCCCchhch----Hhhh--cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 60 NISFTVWDVGGQDKIRPLW----RHYF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 60 ~~~~~i~d~~g~~~~~~~~----~~~~--~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
+..+.++|++|........ .... -..+.+++|+|+...+........+...+ -+--+++||.|....
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~-------~~~giIlTKlD~~~~ 294 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAV-------GIDGVILTKVDADAK 294 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcC-------CCCEEEEeeecCCCC
Confidence 4579999999975432211 1111 24688899999864332222222222211 124678899998643
Q ss_pred C-CHHHHHHHhCCC
Q 031797 134 M-NAAEITDKLGLH 146 (153)
Q Consensus 134 ~-~~~~~~~~~~~~ 146 (153)
- ..-.++...++|
T Consensus 295 ~G~~ls~~~~~~~P 308 (336)
T PRK14974 295 GGAALSIAYVIGKP 308 (336)
T ss_pred ccHHHHHHHHHCcC
Confidence 2 233444444444
No 372
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=97.94 E-value=1e-05 Score=62.13 Aligned_cols=111 Identities=18% Similarity=0.291 Sum_probs=78.6
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEE---EEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV---ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~---~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 91 (153)
...+|+.|+|..++|||+|+++++-+.+.....+.+..+ ..+.....-+.+-|-+|+. ...+...+|++|||
T Consensus 28 ipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIfv 102 (749)
T KOG0705|consen 28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVFV 102 (749)
T ss_pred cchhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCc-----hhhhhhhccceEEE
Confidence 345899999999999999999999887765444444333 2233455566666766632 23345678999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCc
Q 031797 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl 130 (153)
|...+..+++........+-.......+|+++++++.-.
T Consensus 103 f~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~i 141 (749)
T KOG0705|consen 103 FSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHI 141 (749)
T ss_pred EEeccccCHHHHHHHHhhcccccccccchHHhhcCcchh
Confidence 999999999887776666543333457888888888554
No 373
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=97.90 E-value=2.6e-05 Score=56.55 Aligned_cols=119 Identities=17% Similarity=0.176 Sum_probs=73.9
Q ss_pred cccccccEEEEEcCCCCcHHHHHHHHhcCCccc---cCCceeeEEEEEEEc-CEEEEEEEcCCCCC---------chhch
Q 031797 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGFNVETVEYK-NISFTVWDVGGQDK---------IRPLW 78 (153)
Q Consensus 12 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~i~d~~g~~~---------~~~~~ 78 (153)
......--|.++|=.|+|||||++.+....... -++|.+........+ +..+.+-||-|.-+ |+..
T Consensus 173 r~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~AT- 251 (410)
T KOG0410|consen 173 REGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQAT- 251 (410)
T ss_pred cccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHH-
Confidence 334555678999999999999999998554332 244555544444443 34566668887321 2222
Q ss_pred HhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCce----EEEEEeCCCccc
Q 031797 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV----LLVFANKQDLPN 132 (153)
Q Consensus 79 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~----iivv~~K~Dl~~ 132 (153)
......+|.++-|.|++.|.--... .-....+++...+..| ++=|-||+|...
T Consensus 252 LeeVaeadlllHvvDiShP~ae~q~-e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~ 308 (410)
T KOG0410|consen 252 LEEVAEADLLLHVVDISHPNAEEQR-ETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEE 308 (410)
T ss_pred HHHHhhcceEEEEeecCCccHHHHH-HHHHHHHHhcCCCcHHHHhHHHhhcccccccc
Confidence 2234578999999999988654433 3334444554444333 455778888764
No 374
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.89 E-value=1.3e-05 Score=50.86 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=18.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
.--+++.|++|+|||++++++...
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHH
Confidence 456899999999999999999764
No 375
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.89 E-value=0.00035 Score=44.45 Aligned_cols=34 Identities=24% Similarity=0.220 Sum_probs=25.5
Q ss_pred HHHhhcccccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 7 KLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 7 ~~~~~~~~~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
.+...........+++.|++|+|||++++.+.+.
T Consensus 9 ~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 9 ALREALELPPPKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3333333345668999999999999999998765
No 376
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.88 E-value=2.5e-05 Score=50.44 Aligned_cols=54 Identities=17% Similarity=0.209 Sum_probs=35.8
Q ss_pred HhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCC
Q 031797 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (153)
Q Consensus 79 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~ 135 (153)
...++.+|++++|+|+.++.+.. ...+...+.... .+.|+++++||+|+.++..
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~--~~~l~~~l~~~~-~~k~~iivlNK~DL~~~~~ 59 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFR--PPDLERYVKEVD-PRKKNILLLNKADLLTEEQ 59 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccC--CHHHHHHHHhcc-CCCcEEEEEechhcCCHHH
Confidence 34578999999999998765433 112222222211 4689999999999965443
No 377
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.88 E-value=6.6e-05 Score=52.95 Aligned_cols=89 Identities=18% Similarity=0.111 Sum_probs=61.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCcc--ccCC-ceeeEEEEEEEcCEEEEEEEcCCCCCc-------hhchHhhhcCCC
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGEIV--TTIP-TIGFNVETVEYKNISFTVWDVGGQDKI-------RPLWRHYFQNTQ 86 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~~~--~~~~-t~~~~~~~~~~~~~~~~i~d~~g~~~~-------~~~~~~~~~~~~ 86 (153)
.-++-++|-|.+||||++..+.+.... .+.. |.........+++.++++.|.||--+- ..+.....+.|+
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcn 138 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCN 138 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeeccc
Confidence 358899999999999999998876433 2222 223334556688999999999983211 222334567899
Q ss_pred EEEEEEECCCcccHHHHHH
Q 031797 87 GLIFVVDSNDRDRVVEARD 105 (153)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~ 105 (153)
.+++|+|+..+-+-..+.+
T Consensus 139 li~~vld~~kp~~hk~~ie 157 (358)
T KOG1487|consen 139 LIFIVLDVLKPLSHKKIIE 157 (358)
T ss_pred EEEEEeeccCcccHHHHHH
Confidence 9999999987755544433
No 378
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.86 E-value=0.00015 Score=53.16 Aligned_cols=67 Identities=16% Similarity=0.233 Sum_probs=37.3
Q ss_pred EEEEEEEcCCCCCchhchHhhhc--------CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 61 ISFTVWDVGGQDKIRPLWRHYFQ--------NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~--------~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
....++++.|...-......++. ..++++.|+|+.+-.............+... =++++||+|+.+
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~A------D~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA------DRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhC------CEEEEeccccCC
Confidence 45678888887654444433321 2478999999864221111111122222221 288999999976
Q ss_pred c
Q 031797 133 A 133 (153)
Q Consensus 133 ~ 133 (153)
+
T Consensus 165 ~ 165 (318)
T PRK11537 165 E 165 (318)
T ss_pred H
Confidence 4
No 379
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.84 E-value=0.00032 Score=41.61 Aligned_cols=97 Identities=20% Similarity=0.113 Sum_probs=54.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhc-hHhhhcCCCEEEEEEECCCcc
Q 031797 20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL-WRHYFQNTQGLIFVVDSNDRD 98 (153)
Q Consensus 20 i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-~~~~~~~~~~ii~v~d~~~~~ 98 (153)
+++.|..|+||||+...+...-.. .+.....++ .+.+.|+++....... .......++.++++++.. ..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~-~~ 71 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGKRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPE-AL 71 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCc-hh
Confidence 678899999999998887542110 111111111 8889999986543321 134566789999998875 33
Q ss_pred cHHHHHHHHHHHHcCCCCCCceEEEEEe
Q 031797 99 RVVEARDELHRMLNEDELRDAVLLVFAN 126 (153)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~iivv~~ 126 (153)
+....................++.++.|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 72 AVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred hHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 4434333322222222223455555544
No 380
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.83 E-value=2.6e-05 Score=51.30 Aligned_cols=59 Identities=19% Similarity=0.189 Sum_probs=36.9
Q ss_pred hhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHH
Q 031797 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDK 142 (153)
Q Consensus 81 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~ 142 (153)
.++++|.+++|+|+.++..- ....+...+... ..+.|+++|+||+|+.++.....+.+.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~--~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~ 63 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGT--RCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKI 63 (157)
T ss_pred hhhhCCEEEEEEECCCCccc--cCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHH
Confidence 46889999999999875321 122223332221 245899999999999765433333333
No 381
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=3.7e-05 Score=56.86 Aligned_cols=120 Identities=22% Similarity=0.279 Sum_probs=72.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCccc-----------------cC-------CceeeEEE--EEEE------------
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-----------------TI-------PTIGFNVE--TVEY------------ 58 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~~~~-----------------~~-------~t~~~~~~--~~~~------------ 58 (153)
..++.++|...+|||||+--+.++.... .- ...+++.. .+++
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 4799999999999999987776543210 00 11111110 1111
Q ss_pred cCEEEEEEEcCCCCCchhchHhhhc--CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCH
Q 031797 59 KNISFTVWDVGGQDKIRPLWRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA 136 (153)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~~~~~~--~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~ 136 (153)
...-+.++|..|+..|.......+. ..|..++|+++..-..+ ..+...-++.. .++|..++.+|+|+.+....
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~--tTrEHLgl~~A---L~iPfFvlvtK~Dl~~~~~~ 321 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITW--TTREHLGLIAA---LNIPFFVLVTKMDLVDRQGL 321 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcc--ccHHHHHHHHH---hCCCeEEEEEeeccccchhH
Confidence 2246889999999998665443333 35888888887543222 11222222222 47999999999999887544
Q ss_pred HHHHH
Q 031797 137 AEITD 141 (153)
Q Consensus 137 ~~~~~ 141 (153)
+...+
T Consensus 322 ~~tv~ 326 (591)
T KOG1143|consen 322 KKTVK 326 (591)
T ss_pred HHHHH
Confidence 44333
No 382
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=0.00011 Score=51.55 Aligned_cols=114 Identities=14% Similarity=0.063 Sum_probs=68.8
Q ss_pred ccEEEEEcCCCC--cHHHHHHHHhcCCccccCC-ceeeEEEEEEEc----CEEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 17 EMRILMVGLDAA--GKTTILYKLKLGEIVTTIP-TIGFNVETVEYK----NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 17 ~~~i~i~G~~~~--GKtsli~~~~~~~~~~~~~-t~~~~~~~~~~~----~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
.-.++++|.+|+ ||.+++.++....+..... .........+.. ...+.+.-.+--+.+............+++
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~v 83 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFV 83 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEE
Confidence 356899999999 9999999998776653322 111222221111 123333333433333222223345567889
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
+|||.++...+..+..|+...-.. .--.++.++||.|....
T Consensus 84 mvfdlse~s~l~alqdwl~htdin---sfdillcignkvdrvph 124 (418)
T KOG4273|consen 84 MVFDLSEKSGLDALQDWLPHTDIN---SFDILLCIGNKVDRVPH 124 (418)
T ss_pred EEEeccchhhhHHHHhhccccccc---cchhheecccccccccc
Confidence 999999998888888887654222 11235678999998643
No 383
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=5.4e-05 Score=63.43 Aligned_cols=111 Identities=18% Similarity=0.229 Sum_probs=62.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCcc--cc---CCceeeEEEEEE-EcCEEEEEEEcCCCC--------CchhchHhh----
Q 031797 20 ILMVGLDAAGKTTILYKLKLGEIV--TT---IPTIGFNVETVE-YKNISFTVWDVGGQD--------KIRPLWRHY---- 81 (153)
Q Consensus 20 i~i~G~~~~GKtsli~~~~~~~~~--~~---~~t~~~~~~~~~-~~~~~~~i~d~~g~~--------~~~~~~~~~---- 81 (153)
-+|+|++|+||||++.. .+.+|+ +. ....+.....++ +-..+-.++||.|.- .-...|..+
T Consensus 128 y~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lL 206 (1188)
T COG3523 128 YMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLL 206 (1188)
T ss_pred eEEecCCCCCcchHHhc-ccccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHHH
Confidence 47999999999999854 233333 11 111111122222 244577788888721 112333322
Q ss_pred -----hcCCCEEEEEEECCCcccHH-----H----HHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 82 -----FQNTQGLIFVVDSNDRDRVV-----E----ARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 82 -----~~~~~~ii~v~d~~~~~s~~-----~----~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
.+..|+|++.+|+.+...-. + +...+.++ ...-.-..||++++||.|+..
T Consensus 207 kk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El-~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 207 KKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQEL-RETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHH-HHhhccCCceEEEEecccccc
Confidence 33689999999985422111 1 11112222 222335799999999999864
No 384
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.80 E-value=2.2e-05 Score=58.31 Aligned_cols=117 Identities=22% Similarity=0.248 Sum_probs=73.3
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCC----------------------------ccc------cCCceeeEEEEEEEcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGE----------------------------IVT------TIPTIGFNVETVEYKN 60 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~----------------------------~~~------~~~t~~~~~~~~~~~~ 60 (153)
..+.+++++|.-.+||||+-..++... ... ...|.+.-...+....
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 567999999999999999876664310 000 0123333344556677
Q ss_pred EEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCc---ccHHHH-HHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~---~s~~~~-~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
.++.+.|.|||..|...+-.-..++|.-++|+.+... ..|+.= +..-...+.... .-...|+++||+|-+.
T Consensus 157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~-gv~~lVv~vNKMddPt 231 (501)
T KOG0459|consen 157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-GVKHLIVLINKMDDPT 231 (501)
T ss_pred eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhh-ccceEEEEEEeccCCc
Confidence 8999999999999987777777888998998887321 112110 000011111111 2245789999999864
No 385
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.78 E-value=2.8e-05 Score=59.32 Aligned_cols=54 Identities=22% Similarity=0.211 Sum_probs=41.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEE--EEEEEcCEEEEEEEcCCC
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYKNISFTVWDVGGQ 71 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~d~~g~ 71 (153)
...|.++|=|||||||+||.+.+.+-..-..|.|..- .++. -...+.++|+||.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~-ls~~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIF-LSPSVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEE-cCCCceecCCCCc
Confidence 4889999999999999999999998776666666432 2333 3447889999994
No 386
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.76 E-value=0.0006 Score=51.97 Aligned_cols=80 Identities=10% Similarity=0.158 Sum_probs=42.8
Q ss_pred CEEEEEEEcCCCCCch----hchHhhhc---CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 60 NISFTVWDVGGQDKIR----PLWRHYFQ---NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 60 ~~~~~i~d~~g~~~~~----~~~~~~~~---~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
+..+.++|++|..... .....+++ ...-+.+|++.+-. ...+...+..+ ... . +--+++||.|...
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f-~~~---~-~~~vI~TKlDet~ 371 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHF-SRL---P-LDGLIFTKLDETS 371 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHh-CCC---C-CCEEEEecccccc
Confidence 4689999999975442 12223333 22456778887532 22333333332 211 1 1268899999864
Q ss_pred cC-CHHHHHHHhCCC
Q 031797 133 AM-NAAEITDKLGLH 146 (153)
Q Consensus 133 ~~-~~~~~~~~~~~~ 146 (153)
.. ..-.+....++|
T Consensus 372 ~~G~i~~~~~~~~lP 386 (424)
T PRK05703 372 SLGSILSLLIESGLP 386 (424)
T ss_pred cccHHHHHHHHHCCC
Confidence 42 344555555554
No 387
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.74 E-value=0.00035 Score=51.30 Aligned_cols=116 Identities=19% Similarity=0.237 Sum_probs=64.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCcc-------ccCCceeeE-----------E-------EEEE---------------Ec
Q 031797 20 ILMVGLDAAGKTTILYKLKLGEIV-------TTIPTIGFN-----------V-------ETVE---------------YK 59 (153)
Q Consensus 20 i~i~G~~~~GKtsli~~~~~~~~~-------~~~~t~~~~-----------~-------~~~~---------------~~ 59 (153)
.++.|-=|+||||++++++...-- ...-..++. . ..++ ..
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~ 83 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD 83 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence 578899999999999999864320 000011111 0 0111 12
Q ss_pred CEEEEEEEcCCCCCchhchHhhhc--------CCCEEEEEEECCCcccHHH-HHHHHHHHHcCCCCCCceEEEEEeCCCc
Q 031797 60 NISFTVWDVGGQDKIRPLWRHYFQ--------NTQGLIFVVDSNDRDRVVE-ARDELHRMLNEDELRDAVLLVFANKQDL 130 (153)
Q Consensus 60 ~~~~~i~d~~g~~~~~~~~~~~~~--------~~~~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~iivv~~K~Dl 130 (153)
.....++++.|-..-.+....+.. ..|+++-|+|+..-..... ........+... =++++||.|+
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A------D~ivlNK~Dl 157 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA------DVIVLNKTDL 157 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC------cEEEEecccC
Confidence 256677888885443333322222 3578999999875333222 233333333321 2899999999
Q ss_pred cccCCHHHHHH
Q 031797 131 PNAMNAAEITD 141 (153)
Q Consensus 131 ~~~~~~~~~~~ 141 (153)
.++.....+.+
T Consensus 158 v~~~~l~~l~~ 168 (323)
T COG0523 158 VDAEELEALEA 168 (323)
T ss_pred CCHHHHHHHHH
Confidence 98765444333
No 388
>PRK12289 GTPase RsgA; Reviewed
Probab=97.71 E-value=8.3e-05 Score=55.19 Aligned_cols=58 Identities=14% Similarity=0.155 Sum_probs=39.3
Q ss_pred hhhcCCCEEEEEEECCCcc-cHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHH
Q 031797 80 HYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITD 141 (153)
Q Consensus 80 ~~~~~~~~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~ 141 (153)
..+.++|.+++|+|+.++. +...+..++... .. .++|+++|+||+|+.+......+.+
T Consensus 85 ~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a-~~---~~ip~ILVlNK~DLv~~~~~~~~~~ 143 (352)
T PRK12289 85 PPVANADQILLVFALAEPPLDPWQLSRFLVKA-ES---TGLEIVLCLNKADLVSPTEQQQWQD 143 (352)
T ss_pred hhhhcCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEchhcCChHHHHHHHH
Confidence 3468899999999998765 333344444433 22 5789999999999976544344433
No 389
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.71 E-value=3.5e-05 Score=48.21 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031797 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~ 40 (153)
.|+|.|++||||||+.+.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998653
No 390
>PRK08118 topology modulation protein; Reviewed
Probab=97.70 E-value=3.6e-05 Score=51.28 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 031797 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~ 39 (153)
.+|+|+|++|+||||+...+..
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~ 23 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGE 23 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 391
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.69 E-value=5.2e-05 Score=49.72 Aligned_cols=55 Identities=25% Similarity=0.325 Sum_probs=36.8
Q ss_pred chhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 74 ~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
++.......+++|++++|+|++++..... ..+...+.. .+.|+++|+||+|+.+.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~---~~~p~iiv~NK~Dl~~~ 56 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE---LGKKLLIVLNKADLVPK 56 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh---CCCcEEEEEEhHHhCCH
Confidence 34556777888999999999976532221 122222222 35799999999999644
No 392
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.69 E-value=8.3e-05 Score=40.12 Aligned_cols=44 Identities=16% Similarity=0.255 Sum_probs=24.3
Q ss_pred CCCEEEEEEECCCcccH--HHHHHHHHHHHcCCCCCCceEEEEEeCCC
Q 031797 84 NTQGLIFVVDSNDRDRV--VEARDELHRMLNEDELRDAVLLVFANKQD 129 (153)
Q Consensus 84 ~~~~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~iivv~~K~D 129 (153)
=.++++|++|.++...+ ++....+.++ +... ++.|+++|.||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~i-k~~F-~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEI-KPLF-PNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHH-HHHT-TTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHH-HHHc-CCCCEEEEEeccC
Confidence 35889999999865544 3333333333 2222 4799999999998
No 393
>PRK10867 signal recognition particle protein; Provisional
Probab=97.68 E-value=0.00049 Score=52.49 Aligned_cols=80 Identities=18% Similarity=0.120 Sum_probs=41.7
Q ss_pred CEEEEEEEcCCCCCchhc-h---Hhh--hcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 60 NISFTVWDVGGQDKIRPL-W---RHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 60 ~~~~~i~d~~g~~~~~~~-~---~~~--~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
+..+.++||+|....... . ... .-..+.+++|+|.... ++.......+.... + .--+|+||.|....
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~---~-i~giIlTKlD~~~r 255 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL---G-LTGVILTKLDGDAR 255 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC---C-CCEEEEeCccCccc
Confidence 357999999996433211 1 111 1246778999998642 22222222222111 1 13566799996432
Q ss_pred -CCHHHHHHHhCCC
Q 031797 134 -MNAAEITDKLGLH 146 (153)
Q Consensus 134 -~~~~~~~~~~~~~ 146 (153)
-....+....++|
T Consensus 256 gG~alsi~~~~~~P 269 (433)
T PRK10867 256 GGAALSIRAVTGKP 269 (433)
T ss_pred ccHHHHHHHHHCcC
Confidence 2355555555555
No 394
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.68 E-value=0.00034 Score=51.81 Aligned_cols=77 Identities=21% Similarity=0.280 Sum_probs=44.5
Q ss_pred EEEEEEEcCCCCCchhchHhhh----c---CCCEEEEEEECCCccc--H--------------------HHHHHHHHHHH
Q 031797 61 ISFTVWDVGGQDKIRPLWRHYF----Q---NTQGLIFVVDSNDRDR--V--------------------VEARDELHRML 111 (153)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~----~---~~~~ii~v~d~~~~~s--~--------------------~~~~~~~~~~~ 111 (153)
....++++.|...-......+. . ..++++.|+|+.+-.. + ......+...+
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi 172 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQL 172 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHH
Confidence 4667888998665544443331 1 3578999999863210 0 00111222333
Q ss_pred cCCCCCCceEEEEEeCCCccccCCHHHHHHHh
Q 031797 112 NEDELRDAVLLVFANKQDLPNAMNAAEITDKL 143 (153)
Q Consensus 112 ~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~ 143 (153)
... =++++||+|+.++...+.+.+.+
T Consensus 173 ~~A------D~IvlnK~Dl~~~~~l~~~~~~l 198 (341)
T TIGR02475 173 ACA------DLVILNKADLLDAAGLARVRAEI 198 (341)
T ss_pred HhC------CEEEEeccccCCHHHHHHHHHHH
Confidence 221 38999999999887666655554
No 395
>PRK13695 putative NTPase; Provisional
Probab=97.68 E-value=0.00024 Score=47.48 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 031797 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~ 39 (153)
++++++|++|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998654
No 396
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.67 E-value=9.2e-05 Score=56.43 Aligned_cols=24 Identities=46% Similarity=0.599 Sum_probs=20.7
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHh
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~ 38 (153)
..+..++++|++|+||||++..+.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHH
Confidence 346789999999999999988774
No 397
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.67 E-value=4.1e-05 Score=51.51 Aligned_cols=23 Identities=48% Similarity=0.648 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 031797 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
.+|+|+|+||+||||+...+...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999764
No 398
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.66 E-value=2.7e-05 Score=57.86 Aligned_cols=67 Identities=16% Similarity=0.233 Sum_probs=46.1
Q ss_pred hHHHHHhhcccccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceee--EEEEEEEcCEEEEEEEcCCC
Q 031797 4 SFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF--NVETVEYKNISFTVWDVGGQ 71 (153)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~i~d~~g~ 71 (153)
.+.++-+-.+..+.+.|.++|=|++||||+||++...+....-|-.|. .+..+.. -.++-++|+||.
T Consensus 294 llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItL-mkrIfLIDcPGv 362 (572)
T KOG2423|consen 294 LLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITL-MKRIFLIDCPGV 362 (572)
T ss_pred HHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHH-HhceeEecCCCc
Confidence 455566667788899999999999999999999988765432222221 1122222 236788999994
No 399
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.66 E-value=0.00038 Score=52.15 Aligned_cols=109 Identities=14% Similarity=0.201 Sum_probs=60.9
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCc-cccCCceeeEEE-----------------------E-----------EEEcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE-----------------------T-----------VEYKN 60 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~-~~~~~t~~~~~~-----------------------~-----------~~~~~ 60 (153)
..-.+.++||.||||||.+..+..... .......++-.. - .....
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 378899999999999999887754322 111112221110 0 11245
Q ss_pred EEEEEEEcCCCCCchhc----hHhhhcCC--CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceE-EEEEeCCCccc
Q 031797 61 ISFTVWDVGGQDKIRPL----WRHYFQNT--QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVL-LVFANKQDLPN 132 (153)
Q Consensus 61 ~~~~i~d~~g~~~~~~~----~~~~~~~~--~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i-ivv~~K~Dl~~ 132 (153)
.++.+.||.|...+... ...++..+ .-+.+|++++.. ...+...+..+ . .+|+ =+++||.|...
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f-~-----~~~i~~~I~TKlDET~ 352 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQF-S-----LFPIDGLIFTKLDETT 352 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHh-c-----cCCcceeEEEcccccC
Confidence 68999999998766433 23333333 234567777643 22333333332 1 2232 56789999754
No 400
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.65 E-value=0.00092 Score=50.95 Aligned_cols=81 Identities=16% Similarity=0.132 Sum_probs=43.3
Q ss_pred CEEEEEEEcCCCCCchhchHh----h--hcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 60 NISFTVWDVGGQDKIRPLWRH----Y--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 60 ~~~~~i~d~~g~~~~~~~~~~----~--~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
+..+.++||+|........-. + .-..+.+++|+|+...+ +.......+.... + .-=+|.||.|....
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v---~-i~giIlTKlD~~~~ 254 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL---G-LTGVVLTKLDGDAR 254 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC---C-CCEEEEeCccCccc
Confidence 357899999996443221111 1 22468889999986432 2222222222111 1 13566899995432
Q ss_pred -CCHHHHHHHhCCCc
Q 031797 134 -MNAAEITDKLGLHS 147 (153)
Q Consensus 134 -~~~~~~~~~~~~~~ 147 (153)
-....++...++|.
T Consensus 255 ~G~~lsi~~~~~~PI 269 (428)
T TIGR00959 255 GGAALSVRSVTGKPI 269 (428)
T ss_pred ccHHHHHHHHHCcCE
Confidence 23555666666554
No 401
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.65 E-value=4.5e-05 Score=49.10 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 031797 20 ILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 20 i~i~G~~~~GKtsli~~~~~ 39 (153)
|+++|++|+||||+++.+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999873
No 402
>PRK07261 topology modulation protein; Provisional
Probab=97.63 E-value=5e-05 Score=50.75 Aligned_cols=22 Identities=36% Similarity=0.658 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 031797 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~ 39 (153)
.+|+|+|++|+|||||...+..
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999998854
No 403
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.63 E-value=8.6e-05 Score=50.33 Aligned_cols=54 Identities=20% Similarity=0.060 Sum_probs=37.1
Q ss_pred chhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 74 ~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
+......+++++|++++|+|+++...- ....+. .. ..+.|+++|+||+|+....
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~--~~~~l~---~~--~~~~~~ilV~NK~Dl~~~~ 77 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS--LIPRLR---LF--GGNNPVILVGNKIDLLPKD 77 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc--cchhHH---Hh--cCCCcEEEEEEchhcCCCC
Confidence 567778889999999999999865311 111111 11 1467999999999997543
No 404
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.62 E-value=6.6e-05 Score=41.40 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 031797 19 RILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~ 38 (153)
..+|.|++|+||||++..+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999998874
No 405
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.62 E-value=5e-05 Score=52.17 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=21.9
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
.+.-.++++||+|+|||||++++.+-
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 45567899999999999999988653
No 406
>PRK00098 GTPase RsgA; Reviewed
Probab=97.59 E-value=0.00011 Score=53.42 Aligned_cols=49 Identities=16% Similarity=0.212 Sum_probs=36.9
Q ss_pred hhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 81 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
...++|.+++|+|+.++.+.......|...+.. .++|+++|+||+|+.+
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~ 125 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLD 125 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCC
Confidence 468899999999998877665554444444443 4789999999999963
No 407
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.59 E-value=0.00064 Score=43.81 Aligned_cols=105 Identities=16% Similarity=0.197 Sum_probs=58.7
Q ss_pred EEEcCCCCcHHHHHHHHhcCCccccCCceeeEEE--EEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcc
Q 031797 21 LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (153)
Q Consensus 21 ~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 98 (153)
+.-|.+|+|||++...+...-. ........... ....-...+.++|+|+.. .......+..+|.++++.+.+ ..
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~-~~ 79 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALA-KLGKRVLLLDADLGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE-PT 79 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECCCCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-hh
Confidence 3557889999999766632100 00000000000 000011788999999753 233346788899999998875 44
Q ss_pred cHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031797 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~ 131 (153)
++......+..+.... ...++.++.|+.+..
T Consensus 80 s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~~ 110 (139)
T cd02038 80 SITDAYALIKKLAKQL--RVLNFRVVVNRAESP 110 (139)
T ss_pred HHHHHHHHHHHHHHhc--CCCCEEEEEeCCCCH
Confidence 4444444333332221 345678999999754
No 408
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=0.00024 Score=54.60 Aligned_cols=111 Identities=17% Similarity=0.164 Sum_probs=72.0
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCC------------cccc-----CCceeeEEEEEE------------------EcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGE------------IVTT-----IPTIGFNVETVE------------------YKN 60 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~------------~~~~-----~~t~~~~~~~~~------------------~~~ 60 (153)
+..++-++..-..|||||..++.... +... ..-+.+..+-++ ..+
T Consensus 18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~ 97 (842)
T KOG0469|consen 18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG 97 (842)
T ss_pred ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence 34677888999999999999986421 1111 111122222111 134
Q ss_pred EEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031797 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~ 131 (153)
.-++++|.|||..|....-..++-.|+.+.|+|.-+-- .......+...+.+ .+.=+++.||+|..
T Consensus 98 FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~Gv-CVQTETVLrQA~~E----RIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGV-CVQTETVLRQAIAE----RIKPVLVMNKMDRA 163 (842)
T ss_pred eeEEeccCCCcccchhhhhheeEeccCcEEEEEccCce-EechHHHHHHHHHh----hccceEEeehhhHH
Confidence 67899999999999998889999999999999964321 11233344444443 23347889999964
No 409
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.58 E-value=0.00052 Score=53.39 Aligned_cols=24 Identities=42% Similarity=0.454 Sum_probs=20.5
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhc
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
..-.++|+|++|+||||++..+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988753
No 410
>PF05729 NACHT: NACHT domain
Probab=97.54 E-value=0.00064 Score=44.50 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 031797 20 ILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 20 i~i~G~~~~GKtsli~~~~~~ 40 (153)
++|.|++|+|||+++.++...
T Consensus 3 l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 789999999999999998653
No 411
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.52 E-value=7.9e-05 Score=55.28 Aligned_cols=57 Identities=19% Similarity=0.274 Sum_probs=41.7
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEE-EcCEEEEEEEcCCC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE-YKNISFTVWDVGGQ 71 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~i~d~~g~ 71 (153)
.+.+++.|+|-+++||||+||++...+....-++.|+...... .-+..+.+.|.||-
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ldk~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLDKKIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheeccCCceeccCCce
Confidence 5679999999999999999999998876544444444332212 23457889999983
No 412
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.50 E-value=0.00066 Score=51.42 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=19.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhc
Q 031797 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
..-++++|++|+||||++..+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999988853
No 413
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.49 E-value=9.2e-05 Score=51.43 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=21.3
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
.+.--+.|+||+|||||||++-+-+-
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34456899999999999999988653
No 414
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.49 E-value=0.00076 Score=50.51 Aligned_cols=24 Identities=38% Similarity=0.459 Sum_probs=20.4
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhc
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
....++++|++|+||||++..+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999988853
No 415
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.48 E-value=0.00015 Score=48.29 Aligned_cols=21 Identities=38% Similarity=0.523 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031797 19 RILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~ 39 (153)
++++.|++|+||||++++++.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~ 21 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIE 21 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHH
Confidence 689999999999999999875
No 416
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.48 E-value=0.00026 Score=51.26 Aligned_cols=51 Identities=18% Similarity=0.102 Sum_probs=39.1
Q ss_pred HhhhcCCCEEEEEEECCCcc-cHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 79 RHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 79 ~~~~~~~~~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
...+.++|.+++|+|+.++. ++..+..|+... .. .++|+++|+||+|+.+.
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~-~~---~~ip~iIVlNK~DL~~~ 124 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAA-EA---AGIEPVIVLTKADLLDD 124 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHH-HH---cCCCEEEEEEHHHCCCh
Confidence 44578899999999999887 766666655433 32 46899999999999754
No 417
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.47 E-value=0.00013 Score=41.20 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 031797 20 ILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 20 i~i~G~~~~GKtsli~~~~~~ 40 (153)
++++|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999988654
No 418
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.46 E-value=0.00013 Score=46.66 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=22.2
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
...-.++|+|++|+|||||++.+.+.
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEEccCCCccccceeeeccc
Confidence 34567899999999999999988775
No 419
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.46 E-value=0.0014 Score=53.07 Aligned_cols=23 Identities=35% Similarity=0.330 Sum_probs=19.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhc
Q 031797 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
.--++++|+.|+||||++..+..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 45689999999999999988864
No 420
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.45 E-value=0.00085 Score=46.75 Aligned_cols=63 Identities=22% Similarity=0.294 Sum_probs=40.6
Q ss_pred hhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCCCcc
Q 031797 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 148 (153)
Q Consensus 81 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~~~~ 148 (153)
..+++|.++.|+|.+ ..|+ .....+..+.+... -.++.+|+||.|-. .....+.+.+++++.+
T Consensus 152 ~~~~vD~vivVvDpS-~~sl-~taeri~~L~~elg--~k~i~~V~NKv~e~-e~~~~~~~~~~~~~vl 214 (255)
T COG3640 152 TIEGVDLVIVVVDPS-YKSL-RTAERIKELAEELG--IKRIFVVLNKVDEE-EELLRELAEELGLEVL 214 (255)
T ss_pred cccCCCEEEEEeCCc-HHHH-HHHHHHHHHHHHhC--CceEEEEEeeccch-hHHHHhhhhccCCeEE
Confidence 356789999999987 3344 23334444444422 26799999999977 4445566666666443
No 421
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.44 E-value=0.0017 Score=39.40 Aligned_cols=81 Identities=15% Similarity=0.106 Sum_probs=47.7
Q ss_pred EEEEc-CCCCcHHHHHHHHhcCCccccCCceeeEEEEEEE-cCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCc
Q 031797 20 ILMVG-LDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (153)
Q Consensus 20 i~i~G-~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~ 97 (153)
+.+.| ..|+||||+...+...-.. .+.....++. ....+.++|+|+..... ....+..+|.++++++.+ .
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-----~~~~vl~~d~d~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~-~ 73 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-----RGKRVLLIDLDPQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPS-P 73 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-----CCCcEEEEeCCCCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCC-H
Confidence 45666 5689999997776432110 1111111111 11678999999875332 336678899999998875 4
Q ss_pred ccHHHHHHHHH
Q 031797 98 DRVVEARDELH 108 (153)
Q Consensus 98 ~s~~~~~~~~~ 108 (153)
.++......+.
T Consensus 74 ~s~~~~~~~~~ 84 (104)
T cd02042 74 LDLDGLEKLLE 84 (104)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 422
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.43 E-value=0.00014 Score=48.74 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=17.8
Q ss_pred cccccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 12 LFAKKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 12 ~~~~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
........+++.|++|+|||++++++..
T Consensus 19 ~~~~~~~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 19 AQSGSPRNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp TSS-----EEE-B-TTSSHHHHHHHHHH
T ss_pred HHcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3445568899999999999999998754
No 423
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.43 E-value=0.0056 Score=40.69 Aligned_cols=81 Identities=12% Similarity=0.089 Sum_probs=50.4
Q ss_pred EEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCC---HHH
Q 031797 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAE 138 (153)
Q Consensus 62 ~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~---~~~ 138 (153)
.+.++|+|+..... ....+..+|.++++++.+ ..+.......+..+ ... ......+++|+.+...... .++
T Consensus 64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~~-~~~--~~~~~~iv~N~~~~~~~~~~~~~~~ 137 (179)
T cd02036 64 DYILIDSPAGIERG--FITAIAPADEALLVTTPE-ISSLRDADRVKGLL-EAL--GIKVVGVIVNRVRPDMVEGGDMVED 137 (179)
T ss_pred CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCC-cchHHHHHHHHHHH-HHc--CCceEEEEEeCCcccccchhhHHHH
Confidence 79999999864332 344568899999998875 44454444433332 221 1235678999998764332 356
Q ss_pred HHHHhCCCcc
Q 031797 139 ITDKLGLHSL 148 (153)
Q Consensus 139 ~~~~~~~~~~ 148 (153)
+.+.++.+.+
T Consensus 138 ~~~~~~~~v~ 147 (179)
T cd02036 138 IEEILGVPLL 147 (179)
T ss_pred HHHHhCCCEE
Confidence 6666776644
No 424
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.41 E-value=0.00018 Score=45.38 Aligned_cols=25 Identities=36% Similarity=0.352 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCC
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~ 41 (153)
...++++|++|+|||+++..+...-
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc
Confidence 3578999999999999999987653
No 425
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.41 E-value=0.00018 Score=49.57 Aligned_cols=26 Identities=31% Similarity=0.317 Sum_probs=22.9
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
..+...|.|.|++|+|||||++.+..
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999998864
No 426
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.41 E-value=0.00015 Score=45.82 Aligned_cols=21 Identities=38% Similarity=0.409 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 031797 20 ILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 20 i~i~G~~~~GKtsli~~~~~~ 40 (153)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999998754
No 427
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.40 E-value=0.00011 Score=48.59 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=17.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031797 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~ 40 (153)
||+|+|.+++|||||++.+...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6999999999999999999654
No 428
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.40 E-value=0.00012 Score=51.44 Aligned_cols=30 Identities=27% Similarity=0.465 Sum_probs=24.9
Q ss_pred hcccccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 11 KLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 11 ~~~~~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
+..-+.+++++|+|++|+|||+|+..++..
T Consensus 7 ~~l~~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 7 NSLLKDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred hHhcCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 344466799999999999999999888753
No 429
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.40 E-value=0.0011 Score=49.94 Aligned_cols=26 Identities=27% Similarity=0.393 Sum_probs=22.2
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
.....++|.|++|+|||++++.+.+.
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~ 78 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEE 78 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 44567999999999999999999753
No 430
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.37 E-value=0.00018 Score=48.60 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031797 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~ 40 (153)
.++++|++|+||||+++.+...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999654
No 431
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.36 E-value=0.00017 Score=48.33 Aligned_cols=21 Identities=38% Similarity=0.461 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031797 19 RILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~ 39 (153)
.++|+|++||||||+++.+..
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARA 23 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998855
No 432
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.35 E-value=0.00018 Score=46.48 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031797 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~ 40 (153)
.|.|+|+.|+|||||+..+++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999764
No 433
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.35 E-value=0.00036 Score=50.38 Aligned_cols=58 Identities=17% Similarity=0.339 Sum_probs=36.9
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCce----eeEE---EEEEE-cCEEEEEEEcCCC
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTI----GFNV---ETVEY-KNISFTVWDVGGQ 71 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~----~~~~---~~~~~-~~~~~~i~d~~g~ 71 (153)
....++++|+|-||+|||||+|.+.+..... ...++ |+.. ..+.. ....+.++|+||.
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGi 206 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGI 206 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCc
Confidence 3567999999999999999999886543221 11111 1111 11222 3346888999994
No 434
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.34 E-value=0.0002 Score=46.13 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 031797 20 ILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 20 i~i~G~~~~GKtsli~~~~~~ 40 (153)
++++|++|+||||+++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999764
No 435
>PRK06217 hypothetical protein; Validated
Probab=97.34 E-value=0.0002 Score=48.35 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 031797 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~ 39 (153)
.+|+|+|.+|+||||+...+..
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~ 23 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAE 23 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 436
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.34 E-value=0.00021 Score=48.99 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhc
Q 031797 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
++++.++|+.|+||||+++++.+
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~ 23 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTR 23 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998865
No 437
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.33 E-value=0.00023 Score=48.96 Aligned_cols=25 Identities=32% Similarity=0.282 Sum_probs=21.8
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
++..-|.|+|++|+|||||++.+.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 4567799999999999999999864
No 438
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.33 E-value=0.0002 Score=44.98 Aligned_cols=21 Identities=38% Similarity=0.444 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 031797 20 ILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 20 i~i~G~~~~GKtsli~~~~~~ 40 (153)
|+|.|.+||||||+++.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999988654
No 439
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.32 E-value=0.00023 Score=50.93 Aligned_cols=25 Identities=36% Similarity=0.442 Sum_probs=22.4
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
...-.++|+|++|+||||+++.++.
T Consensus 125 ~~~~~ili~G~tGSGKTT~l~all~ 149 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLLNALLE 149 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCccccchHHHHHhh
Confidence 3478999999999999999999975
No 440
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.31 E-value=0.00044 Score=45.35 Aligned_cols=44 Identities=20% Similarity=0.300 Sum_probs=29.6
Q ss_pred CEEEEEEECCCcccHHHHHHHHH-HHHcCCCCCCceEEEEEeCCCccccC
Q 031797 86 QGLIFVVDSNDRDRVVEARDELH-RMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 86 ~~ii~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
|.+++|+|+.++.+... .++. ..+.. .+.|+++|+||+|+.+..
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~---~~~p~IiVlNK~Dl~~~~ 45 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIKE---KGKKLILVLNKADLVPKE 45 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHhc---CCCCEEEEEechhcCCHH
Confidence 68899999987654432 1222 22222 468999999999996543
No 441
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.31 E-value=0.0036 Score=44.95 Aligned_cols=123 Identities=19% Similarity=0.206 Sum_probs=64.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCC----c-c---cc--------------CCceeeEEEEE--------------EEcC
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGE----I-V---TT--------------IPTIGFNVETV--------------EYKN 60 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~----~-~---~~--------------~~t~~~~~~~~--------------~~~~ 60 (153)
.-+++++|++|+||||++..+...- . . .. ....+...... ...+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence 3699999999999999988774321 0 0 00 00111111110 0124
Q ss_pred EEEEEEEcCCCCCchhc----hHhhhc--CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 61 ISFTVWDVGGQDKIRPL----WRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 61 ~~~~i~d~~g~~~~~~~----~~~~~~--~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
..+.++|++|....... ....++ ..+-+++|+|++-. ..........+ .. -.+-=+++||.|.....
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f-~~----~~~~~~I~TKlDet~~~ 227 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNF-KD----IHIDGIVFTKFDETASS 227 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHh-CC----CCCCEEEEEeecCCCCc
Confidence 68999999997543211 112222 34668899998632 22222322222 21 12236788999976532
Q ss_pred -CHHHHHHHhCCC
Q 031797 135 -NAAEITDKLGLH 146 (153)
Q Consensus 135 -~~~~~~~~~~~~ 146 (153)
..-.++...++|
T Consensus 228 G~~l~~~~~~~~P 240 (270)
T PRK06731 228 GELLKIPAVSSAP 240 (270)
T ss_pred cHHHHHHHHHCcC
Confidence 233444444444
No 442
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.29 E-value=0.00022 Score=49.93 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=21.5
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
...=-+.++|++|+|||||++-+.+-
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34456899999999999999988764
No 443
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.28 E-value=0.00025 Score=43.56 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHh
Q 031797 17 EMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~ 38 (153)
.-.++++|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4568999999999999999875
No 444
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.27 E-value=0.00031 Score=48.36 Aligned_cols=25 Identities=20% Similarity=0.465 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
+..-++|+|++|+||||+++.+...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 5577889999999999999999653
No 445
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.27 E-value=0.00026 Score=47.47 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031797 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~ 40 (153)
-++++|++|+||||+++.+.+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 5899999999999999999764
No 446
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.26 E-value=0.00021 Score=51.40 Aligned_cols=59 Identities=19% Similarity=0.159 Sum_probs=37.9
Q ss_pred CCCC-CchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 69 GGQD-KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 69 ~g~~-~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
|||- .........++.+|++++|+|+.++.+... ..+...+ .+.|+++|+||+|+.+..
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~ 64 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPA 64 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHH
Confidence 5552 223344566789999999999976543321 1223333 247899999999996543
No 447
>PHA00729 NTP-binding motif containing protein
Probab=97.26 E-value=0.0005 Score=47.84 Aligned_cols=31 Identities=23% Similarity=0.234 Sum_probs=24.2
Q ss_pred HhhcccccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 9 FSKLFAKKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 9 ~~~~~~~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
.+......-.+++++|++|+|||+|..++..
T Consensus 9 ~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 9 VSAYNNNGFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred HHHHhcCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 3444444556999999999999999998865
No 448
>PRK06547 hypothetical protein; Provisional
Probab=97.26 E-value=0.00052 Score=45.92 Aligned_cols=29 Identities=28% Similarity=0.370 Sum_probs=23.9
Q ss_pred hcccccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 11 KLFAKKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 11 ~~~~~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
.........|+|.|++|+||||+.+.+..
T Consensus 9 ~~~~~~~~~i~i~G~~GsGKTt~a~~l~~ 37 (172)
T PRK06547 9 RLCGGGMITVLIDGRSGSGKTTLAGALAA 37 (172)
T ss_pred HhhcCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34456678899999999999999999864
No 449
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.25 E-value=0.00026 Score=48.42 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 031797 20 ILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 20 i~i~G~~~~GKtsli~~~~~~ 40 (153)
++|+|++|+||||+++.+++.
T Consensus 4 ilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999987653
No 450
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.24 E-value=0.00036 Score=47.77 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=22.1
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
....-++++|++|+|||||++.+.+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34567999999999999999988764
No 451
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.24 E-value=0.0062 Score=46.19 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.2
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhc
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
..+=+.++||-.+||||||+||..
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMe 39 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFME 39 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHH
Confidence 457789999999999999999964
No 452
>PRK03839 putative kinase; Provisional
Probab=97.24 E-value=0.00031 Score=47.20 Aligned_cols=21 Identities=33% Similarity=0.327 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031797 19 RILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~ 39 (153)
+|+++|++|+||||+...+..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998854
No 453
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.24 E-value=0.00027 Score=50.11 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=21.4
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
++.--++++||.|+|||||++.+.+
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3456689999999999999999976
No 454
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.23 E-value=0.00032 Score=47.48 Aligned_cols=25 Identities=36% Similarity=0.368 Sum_probs=21.9
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..-.++++|++|+||||+++.+.+.
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4678999999999999999998764
No 455
>PRK14530 adenylate kinase; Provisional
Probab=97.23 E-value=0.00035 Score=48.36 Aligned_cols=21 Identities=43% Similarity=0.512 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHh
Q 031797 18 MRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~ 38 (153)
.+|+|+|++|+||||+.+.+.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La 24 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLA 24 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999885
No 456
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.22 E-value=0.00031 Score=47.18 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCC
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~ 41 (153)
..=+++.||+|+||||+++.++...
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4558899999999999999998765
No 457
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.21 E-value=0.00031 Score=47.59 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=21.6
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
+..=++++||+|+||||++++++..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3456899999999999999999764
No 458
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.21 E-value=0.0003 Score=47.97 Aligned_cols=20 Identities=30% Similarity=0.328 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 031797 20 ILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 20 i~i~G~~~~GKtsli~~~~~ 39 (153)
|.|.|++|+|||||++.+.+
T Consensus 2 igi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999854
No 459
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.21 E-value=0.00035 Score=44.84 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031797 19 RILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~ 39 (153)
.|+++|++|+|||++++.+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998854
No 460
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.21 E-value=0.00034 Score=48.38 Aligned_cols=26 Identities=31% Similarity=0.307 Sum_probs=22.4
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
...-.++++|++|+|||||++.+.+-
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 34567899999999999999999775
No 461
>PRK08233 hypothetical protein; Provisional
Probab=97.21 E-value=0.00039 Score=46.54 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhc
Q 031797 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
..-|+|.|++|+||||+.+.+..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46688899999999999999864
No 462
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.19 E-value=0.00041 Score=46.61 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=22.1
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
-...-.+.++|++|+|||||++.++.
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 35567899999999999999998863
No 463
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.19 E-value=0.00037 Score=46.93 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=21.6
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
+..-.+.|+|++|+|||||+|-+.+
T Consensus 23 ~~ge~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 23 PAGEIVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHh
Confidence 4456789999999999999998865
No 464
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.17 E-value=0.00038 Score=46.83 Aligned_cols=26 Identities=35% Similarity=0.290 Sum_probs=22.5
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
...-.+.++|++|+|||||++.+.+-
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcC
Confidence 44568999999999999999988765
No 465
>PRK14532 adenylate kinase; Provisional
Probab=97.17 E-value=0.00039 Score=46.99 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031797 19 RILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~ 39 (153)
+|+++|++|+||||+..++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 466
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.17 E-value=0.0004 Score=47.78 Aligned_cols=26 Identities=38% Similarity=0.439 Sum_probs=22.2
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
...-.+.++|++|+|||||++.+.+.
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999999875
No 467
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.17 E-value=0.00063 Score=49.25 Aligned_cols=25 Identities=36% Similarity=0.214 Sum_probs=21.2
Q ss_pred ccccccEEEEEcCCCCcHHHHHHHH
Q 031797 13 FAKKEMRILMVGLDAAGKTTILYKL 37 (153)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKtsli~~~ 37 (153)
....++-|.|.|++||||||+++.+
T Consensus 58 ~~~~p~IIGIaG~~GSGKSTlar~L 82 (290)
T TIGR00554 58 GAKIPYIISIAGSVAVGKSTTARIL 82 (290)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHH
Confidence 3456788999999999999999766
No 468
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.16 E-value=0.00041 Score=47.59 Aligned_cols=26 Identities=31% Similarity=0.188 Sum_probs=22.4
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
...-.+.++|++|+|||||++.+.+-
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999774
No 469
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.16 E-value=0.00036 Score=49.29 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhc
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
+.--+.++||.|+|||||++.+++
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 345689999999999999999988
No 470
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.16 E-value=0.00035 Score=46.98 Aligned_cols=21 Identities=33% Similarity=0.328 Sum_probs=19.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHh
Q 031797 18 MRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~ 38 (153)
.-++++|++||||||+++.+.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999886
No 471
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.15 E-value=0.00042 Score=47.89 Aligned_cols=26 Identities=31% Similarity=0.317 Sum_probs=22.3
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
...-.++++|++|+|||||++.+.+-
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34467899999999999999999874
No 472
>PRK14531 adenylate kinase; Provisional
Probab=97.15 E-value=0.00044 Score=46.67 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 031797 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~ 39 (153)
.+|+++|+||+||||+...+..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988843
No 473
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.15 E-value=0.00043 Score=46.86 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=22.1
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
...-.+.++|++|+|||||++.+.+-
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34457899999999999999988775
No 474
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.15 E-value=0.0005 Score=47.31 Aligned_cols=29 Identities=24% Similarity=0.195 Sum_probs=24.1
Q ss_pred cccccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 12 LFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 12 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..+.....+.++|+.|+|||||+++++..
T Consensus 17 ~~~~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 17 LDKHGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred hhhcCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 33456789999999999999999999753
No 475
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.14 E-value=0.00044 Score=47.67 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=22.0
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
...-.++++|++|+|||||++.+.+-
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34457899999999999999998774
No 476
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.14 E-value=0.00044 Score=46.30 Aligned_cols=52 Identities=17% Similarity=0.131 Sum_probs=32.6
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHH--HcCCCCCCceEEEEEeCCCccccCCHHHHHHH
Q 031797 86 QGLIFVVDSNDRDRVVEARDELHRM--LNEDELRDAVLLVFANKQDLPNAMNAAEITDK 142 (153)
Q Consensus 86 ~~ii~v~d~~~~~s~~~~~~~~~~~--~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~ 142 (153)
|++++|+|+.++.+-. ...+... +.. .+.|+++|+||+|+.+.....++.+.
T Consensus 1 DvVl~VvDar~p~~~~--~~~i~~~~~l~~---~~kp~IlVlNK~DL~~~~~l~~~~~~ 54 (172)
T cd04178 1 DVILEVLDARDPLGCR--CPQVEEAVLQAG---GNKKLVLVLNKIDLVPKENVEKWLKY 54 (172)
T ss_pred CEEEEEEECCCCCCCC--CHHHHHHHHhcc---CCCCEEEEEehhhcCCHHHHHHHHHH
Confidence 7899999997653221 1122222 222 35899999999999876554444444
No 477
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.14 E-value=0.00044 Score=47.92 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=22.1
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
...-.+.++|++|+|||||++.+.+-
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34457899999999999999999875
No 478
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.14 E-value=0.00045 Score=47.64 Aligned_cols=26 Identities=35% Similarity=0.393 Sum_probs=22.3
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
...-.++++|++|+|||||++.+.+-
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44567899999999999999998775
No 479
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.14 E-value=0.00044 Score=48.42 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=22.2
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
...-.+.++|++|+|||||++.+.+.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34457899999999999999999864
No 480
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.13 E-value=0.00046 Score=47.56 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.3
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
...-.++++|++|+|||||++.+.+-
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999999875
No 481
>PRK04195 replication factor C large subunit; Provisional
Probab=97.12 E-value=0.00045 Score=53.55 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
...+++.||+|+||||+++.+.+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 567999999999999999999764
No 482
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.12 E-value=0.00049 Score=47.16 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=21.8
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..-.+.++|++|+|||||++.+.+-
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4457899999999999999999875
No 483
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.12 E-value=0.00049 Score=47.34 Aligned_cols=26 Identities=27% Similarity=0.199 Sum_probs=22.2
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
...-.++++|++|+|||||++.+.+.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34457899999999999999999875
No 484
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.11 E-value=0.00049 Score=47.72 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=22.2
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
...-.++++|++|+|||||++.+.+-
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567899999999999999998774
No 485
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.11 E-value=0.00051 Score=46.09 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=22.3
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
...-.+.++|++|+|||||++.+.+-
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44567889999999999999999764
No 486
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.11 E-value=0.00045 Score=51.18 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=23.0
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
....+++|+|+.|+|||||++.+++.
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~ 185 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISA 185 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcc
Confidence 45688999999999999999999764
No 487
>PRK13949 shikimate kinase; Provisional
Probab=97.11 E-value=0.00049 Score=45.89 Aligned_cols=22 Identities=45% Similarity=0.528 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 031797 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~ 39 (153)
.+|+++|++|+||||+...+..
T Consensus 2 ~~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999987753
No 488
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.11 E-value=0.00044 Score=47.59 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
. .++++|++|+|||||++.+.+-
T Consensus 26 g-~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 26 G-MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred C-cEEEECCCCCCHHHHHHHHhCC
Confidence 5 8999999999999999999764
No 489
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.11 E-value=0.00052 Score=48.05 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhc
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
.+++|+++|++||||||+...+..
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998854
No 490
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.11 E-value=0.00044 Score=48.19 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=19.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhc
Q 031797 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
.--|.++|++|+|||||++.+.+
T Consensus 30 GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 30 GEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred CcEEEEECCCCCcHHHHHHHHhc
Confidence 34689999999999999998865
No 491
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.11 E-value=0.00041 Score=48.29 Aligned_cols=20 Identities=35% Similarity=0.320 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 031797 20 ILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 20 i~i~G~~~~GKtsli~~~~~ 39 (153)
+.|.|++|||||||++.+.+
T Consensus 2 igI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 57899999999999988854
No 492
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.11 E-value=0.00049 Score=48.09 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=22.6
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
...-.++++|++|+|||||++.+.+.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44568899999999999999999775
No 493
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.10 E-value=0.00049 Score=48.39 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=22.0
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
...-.++++|++|+|||||++.+.+-
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34457899999999999999998764
No 494
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.09 E-value=0.00052 Score=47.25 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=22.4
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
...-.++++|++|+|||||++.+.+.
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567899999999999999999875
No 495
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.09 E-value=0.00062 Score=47.04 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
....+++.|++|+|||||++.+.+.
T Consensus 19 ~~~~~~l~G~rg~GKTsLl~~~~~~ 43 (234)
T PF01637_consen 19 PSQHILLYGPRGSGKTSLLKEFINE 43 (234)
T ss_dssp -SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCcEEEEEcCCcCCHHHHHHHHHHH
Confidence 4577899999999999999999764
No 496
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.09 E-value=0.00045 Score=46.19 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..-+.|+|++|+|||||+.++...
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHH
Confidence 446899999999999999998753
No 497
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.09 E-value=0.0068 Score=37.15 Aligned_cols=97 Identities=15% Similarity=0.124 Sum_probs=52.8
Q ss_pred EcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEE---cCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCccc
Q 031797 23 VGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR 99 (153)
Q Consensus 23 ~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s 99 (153)
-+.+|+||||+...+...-.... +....-++. ....+.++|+|+..... ....+..+|.++++.+.+ ..+
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~----~~~~~l~d~d~~~~~D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~-~~s 78 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEA----GRRVLLVDLDLQFGDDYVVVDLGRSLDEV--SLAALDQADRVFLVTQQD-LPS 78 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcC----CCcEEEEECCCCCCCCEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCC-hHH
Confidence 35678999998766532100000 000000000 11288999999865332 334678899999998865 445
Q ss_pred HHHHHHHHHHHHcCCCCC-CceEEEEEeC
Q 031797 100 VVEARDELHRMLNEDELR-DAVLLVFANK 127 (153)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~-~~~iivv~~K 127 (153)
..........+.. ...+ ...+.+|+|+
T Consensus 79 ~~~~~~~~~~l~~-~~~~~~~~~~lVvNr 106 (106)
T cd03111 79 IRNAKRLLELLRV-LDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHH-cCCCCcCceEEEecC
Confidence 5555554444322 2222 4457777775
No 498
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.09 E-value=0.00051 Score=47.60 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=22.0
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
...-.++++|++|+|||||++.+.+-
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 34567899999999999999988764
No 499
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.08 E-value=0.00055 Score=47.39 Aligned_cols=26 Identities=35% Similarity=0.264 Sum_probs=22.3
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
...-.++++|++|+|||||++.+.+-
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34457999999999999999999875
No 500
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.08 E-value=0.00056 Score=47.42 Aligned_cols=26 Identities=31% Similarity=0.280 Sum_probs=22.2
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
...-.+.++|++|+|||||++.+.+.
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34557899999999999999999775
Done!