Query 031797
Match_columns 153
No_of_seqs 117 out of 1559
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 08:24:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031797.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031797hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zj6_A ADP-ribosylation factor 100.0 3.3E-30 1.1E-34 173.1 16.3 145 1-146 1-145 (187)
2 1moz_A ARL1, ADP-ribosylation 100.0 3.7E-30 1.3E-34 171.9 15.7 149 1-149 1-150 (183)
3 2x77_A ADP-ribosylation factor 100.0 2.6E-30 8.9E-35 173.8 14.1 149 1-149 3-154 (189)
4 1ksh_A ARF-like protein 2; sma 100.0 3.6E-29 1.2E-33 167.7 16.4 145 1-147 3-148 (186)
5 2b6h_A ADP-ribosylation factor 100.0 1.3E-29 4.4E-34 171.2 14.1 143 7-149 19-161 (192)
6 1upt_A ARL1, ADP-ribosylation 100.0 2.7E-28 9.1E-33 161.1 17.7 134 15-148 5-138 (171)
7 1r8s_A ADP-ribosylation factor 100.0 9.8E-29 3.4E-33 162.2 15.4 132 18-149 1-132 (164)
8 1fzq_A ADP-ribosylation factor 100.0 7.8E-29 2.7E-33 165.9 14.6 134 15-148 14-147 (181)
9 4dkx_A RAS-related protein RAB 100.0 4.3E-29 1.5E-33 171.6 12.8 134 15-149 11-154 (216)
10 1m2o_B GTP-binding protein SAR 100.0 1.4E-27 4.6E-32 161.0 17.2 134 13-146 19-152 (190)
11 2h17_A ADP-ribosylation factor 100.0 6.3E-28 2.2E-32 161.2 14.8 137 12-148 16-152 (181)
12 1f6b_A SAR1; gtpases, N-termin 100.0 1.1E-27 3.7E-32 162.5 15.0 133 13-145 21-153 (198)
13 1zd9_A ADP-ribosylation factor 100.0 2.2E-27 7.5E-32 159.5 16.0 135 13-147 18-153 (188)
14 4bas_A ADP-ribosylation factor 100.0 8.8E-28 3E-32 162.3 13.4 137 11-147 11-156 (199)
15 2h57_A ADP-ribosylation factor 100.0 5.8E-27 2E-31 157.6 15.7 134 13-146 17-154 (190)
16 3o47_A ADP-ribosylation factor 99.9 5.7E-27 2E-31 170.2 14.6 136 14-149 162-297 (329)
17 3lvq_E ARF-GAP with SH3 domain 99.9 1.7E-25 5.8E-30 170.3 17.2 136 15-150 320-455 (497)
18 3oes_A GTPase rhebl1; small GT 99.9 2.3E-25 7.9E-30 151.1 14.9 140 9-148 16-164 (201)
19 3q72_A GTP-binding protein RAD 99.9 2.6E-25 8.9E-30 146.1 14.0 132 17-148 2-141 (166)
20 3t5g_A GTP-binding protein RHE 99.9 4.5E-25 1.5E-29 147.0 15.2 134 15-148 4-146 (181)
21 3bc1_A RAS-related protein RAB 99.9 3.4E-25 1.2E-29 148.7 13.3 136 13-148 7-162 (195)
22 3ihw_A Centg3; RAS, centaurin, 99.9 5.1E-25 1.8E-29 147.7 13.9 133 11-148 14-157 (184)
23 3q3j_B RHO-related GTP-binding 99.9 1.5E-25 5.3E-30 153.6 11.5 136 12-148 22-179 (214)
24 3kkq_A RAS-related protein M-R 99.9 6E-25 2.1E-29 146.6 13.9 136 13-148 14-158 (183)
25 1kao_A RAP2A; GTP-binding prot 99.9 1.8E-24 6.2E-29 141.8 15.5 133 16-148 2-143 (167)
26 1r2q_A RAS-related protein RAB 99.9 8.1E-25 2.8E-29 143.9 13.5 133 15-148 4-146 (170)
27 1ek0_A Protein (GTP-binding pr 99.9 9.8E-25 3.3E-29 143.5 13.7 132 16-148 2-146 (170)
28 2nzj_A GTP-binding protein REM 99.9 1.1E-24 3.9E-29 144.1 13.9 134 15-148 2-146 (175)
29 2fn4_A P23, RAS-related protei 99.9 6.5E-25 2.2E-29 145.9 12.7 136 13-148 5-149 (181)
30 1z06_A RAS-related protein RAB 99.9 1.2E-24 4E-29 146.2 13.9 136 13-148 16-162 (189)
31 4dsu_A GTPase KRAS, isoform 2B 99.9 2.9E-24 1E-28 143.7 15.7 134 15-148 2-143 (189)
32 3tkl_A RAS-related protein RAB 99.9 2.2E-24 7.5E-29 145.3 15.0 133 15-148 14-156 (196)
33 1c1y_A RAS-related protein RAP 99.9 1.6E-24 5.3E-29 142.3 13.9 128 16-143 2-138 (167)
34 2hup_A RAS-related protein RAB 99.9 8.9E-25 3E-29 148.4 12.9 131 14-145 26-166 (201)
35 3reg_A RHO-like small GTPase; 99.9 8.8E-25 3E-29 147.3 12.5 132 14-146 20-162 (194)
36 3tw8_B RAS-related protein RAB 99.9 4.5E-24 1.5E-28 141.8 15.7 132 15-148 7-148 (181)
37 2atv_A RERG, RAS-like estrogen 99.9 8.5E-25 2.9E-29 147.7 12.3 141 7-148 18-167 (196)
38 2fg5_A RAB-22B, RAS-related pr 99.9 1.7E-24 5.8E-29 145.8 13.5 136 12-148 18-163 (192)
39 2efe_B Small GTP-binding prote 99.9 4.4E-24 1.5E-28 142.0 15.2 135 13-148 8-152 (181)
40 2gf9_A RAS-related protein RAB 99.9 2.3E-24 7.9E-29 144.7 13.7 133 15-148 20-162 (189)
41 1u8z_A RAS-related protein RAL 99.9 1E-24 3.5E-29 143.1 11.6 134 15-148 2-144 (168)
42 2fh5_B SR-beta, signal recogni 99.9 2E-24 7E-29 147.6 13.5 126 15-140 5-137 (214)
43 1z2a_A RAS-related protein RAB 99.9 4.9E-25 1.7E-29 144.8 10.0 132 15-148 3-144 (168)
44 1z0j_A RAB-22, RAS-related pro 99.9 3.5E-24 1.2E-28 141.0 14.0 133 15-148 4-146 (170)
45 2hxs_A RAB-26, RAS-related pro 99.9 1.6E-24 5.4E-29 143.8 12.4 135 14-148 3-150 (178)
46 2f7s_A C25KG, RAS-related prot 99.9 7.4E-25 2.5E-29 150.1 10.9 134 15-148 23-176 (217)
47 1m7b_A RND3/RHOE small GTP-bin 99.9 1.8E-24 6.3E-29 144.7 12.6 118 14-132 4-125 (184)
48 2bov_A RAla, RAS-related prote 99.9 8E-24 2.8E-28 143.5 15.9 138 11-148 8-154 (206)
49 2g6b_A RAS-related protein RAB 99.9 3.4E-24 1.2E-28 142.5 13.7 134 14-148 7-151 (180)
50 2fu5_C RAS-related protein RAB 99.9 5.8E-25 2E-29 146.7 9.8 133 15-148 6-148 (183)
51 1zbd_A Rabphilin-3A; G protein 99.9 7.1E-24 2.4E-28 143.7 15.3 133 15-148 6-148 (203)
52 1z0f_A RAB14, member RAS oncog 99.9 2.7E-24 9.3E-29 142.6 12.7 134 14-148 12-155 (179)
53 2iwr_A Centaurin gamma 1; ANK 99.9 2.6E-24 9E-29 142.9 12.7 112 15-131 5-121 (178)
54 3q85_A GTP-binding protein REM 99.9 3.4E-24 1.2E-28 141.1 13.1 132 17-148 2-144 (169)
55 2ew1_A RAS-related protein RAB 99.9 2.8E-24 9.4E-29 146.1 12.9 133 15-148 24-166 (201)
56 1x3s_A RAS-related protein RAB 99.9 7.3E-24 2.5E-28 142.5 14.9 134 15-148 13-155 (195)
57 2oil_A CATX-8, RAS-related pro 99.9 1E-23 3.5E-28 141.9 15.5 133 15-148 23-165 (193)
58 3c5c_A RAS-like protein 12; GD 99.9 1.6E-24 5.6E-29 145.5 11.4 135 13-148 17-162 (187)
59 2a9k_A RAS-related protein RAL 99.9 7E-24 2.4E-28 141.5 14.4 135 14-148 15-158 (187)
60 2bme_A RAB4A, RAS-related prot 99.9 5.1E-24 1.7E-28 142.4 13.5 133 15-148 8-150 (186)
61 1z08_A RAS-related protein RAB 99.9 1.8E-24 6.1E-29 142.5 11.1 133 15-148 4-146 (170)
62 1g16_A RAS-related protein SEC 99.9 2.7E-24 9.1E-29 141.6 11.9 132 16-148 2-142 (170)
63 3t1o_A Gliding protein MGLA; G 99.9 2.6E-24 8.8E-29 144.8 11.9 133 11-145 8-165 (198)
64 2atx_A Small GTP binding prote 99.9 3.4E-24 1.2E-28 144.4 12.3 119 13-132 14-136 (194)
65 3cph_A RAS-related protein SEC 99.9 6.7E-24 2.3E-28 144.7 13.9 137 11-148 14-159 (213)
66 2bcg_Y Protein YP2, GTP-bindin 99.9 1.5E-23 5.2E-28 142.5 15.5 133 15-148 6-148 (206)
67 1gwn_A RHO-related GTP-binding 99.9 4.2E-24 1.4E-28 145.6 12.6 117 15-132 26-146 (205)
68 2a5j_A RAS-related protein RAB 99.9 4.7E-24 1.6E-28 143.5 12.6 133 15-148 19-161 (191)
69 2y8e_A RAB-protein 6, GH09086P 99.9 8.2E-24 2.8E-28 140.3 13.3 133 15-148 12-154 (179)
70 3cbq_A GTP-binding protein REM 99.9 3.7E-24 1.3E-28 144.8 11.7 136 13-148 19-165 (195)
71 2p5s_A RAS and EF-hand domain 99.9 2E-24 6.7E-29 146.3 10.2 138 10-148 21-174 (199)
72 2yc2_C IFT27, small RAB-relate 99.9 5.6E-25 1.9E-29 149.3 7.5 134 15-148 18-168 (208)
73 3dz8_A RAS-related protein RAB 99.9 1.6E-24 5.5E-29 145.8 9.6 133 15-148 21-163 (191)
74 2ce2_X GTPase HRAS; signaling 99.9 7.9E-24 2.7E-28 138.5 12.6 133 16-148 2-142 (166)
75 3bwd_D RAC-like GTP-binding pr 99.9 7.2E-25 2.4E-29 146.0 7.6 131 14-145 5-154 (182)
76 1wms_A RAB-9, RAB9, RAS-relate 99.9 1.1E-23 3.9E-28 139.5 13.4 119 14-132 4-130 (177)
77 4gzl_A RAS-related C3 botulinu 99.9 5.3E-24 1.8E-28 144.8 11.5 121 12-133 25-149 (204)
78 3clv_A RAB5 protein, putative; 99.9 3.4E-23 1.2E-27 139.9 15.1 131 15-148 5-181 (208)
79 2erx_A GTP-binding protein DI- 99.9 1.3E-23 4.5E-28 138.3 12.6 133 16-148 2-144 (172)
80 2q3h_A RAS homolog gene family 99.9 7.5E-24 2.6E-28 143.4 11.3 120 12-132 15-138 (201)
81 3con_A GTPase NRAS; structural 99.9 2.3E-23 7.9E-28 139.8 13.6 135 14-148 18-160 (190)
82 2fv8_A H6, RHO-related GTP-bin 99.9 2E-23 6.7E-28 142.2 13.3 121 12-133 20-144 (207)
83 3l0i_B RAS-related protein RAB 99.9 1.7E-24 5.7E-29 146.6 8.0 134 15-149 31-174 (199)
84 3cpj_B GTP-binding protein YPT 99.9 1.4E-23 4.9E-28 144.5 12.7 133 15-148 11-153 (223)
85 2gco_A H9, RHO-related GTP-bin 99.9 1.1E-23 3.8E-28 142.9 11.9 121 12-133 20-144 (201)
86 2j0v_A RAC-like GTP-binding pr 99.9 5.2E-24 1.8E-28 145.4 9.8 130 15-145 7-153 (212)
87 2o52_A RAS-related protein RAB 99.9 1.3E-23 4.6E-28 142.4 11.7 133 15-148 23-165 (200)
88 2j1l_A RHO-related GTP-binding 99.9 8E-24 2.7E-28 144.9 10.5 119 14-133 31-153 (214)
89 1vg8_A RAS-related protein RAB 99.9 2.3E-23 7.9E-28 141.4 12.5 120 14-133 5-132 (207)
90 1mh1_A RAC1; GTP-binding, GTPa 99.9 1.4E-23 4.7E-28 140.1 10.7 118 15-133 3-124 (186)
91 3gj0_A GTP-binding nuclear pro 99.9 6.8E-24 2.3E-28 145.8 9.2 135 12-148 10-152 (221)
92 2il1_A RAB12; G-protein, GDP, 99.9 4.8E-23 1.6E-27 138.8 12.7 119 14-133 23-146 (192)
93 1ky3_A GTP-binding protein YPT 99.9 2E-23 6.7E-28 138.8 10.4 119 14-132 5-132 (182)
94 2gf0_A GTP-binding protein DI- 99.9 4.8E-23 1.7E-27 139.0 11.6 134 15-148 6-148 (199)
95 2g3y_A GTP-binding protein GEM 99.9 1.2E-22 4E-27 139.1 13.3 134 15-148 35-180 (211)
96 3r7w_A Gtpase1, GTP-binding pr 99.9 1.6E-22 5.6E-27 145.5 14.3 129 16-145 2-153 (307)
97 3llu_A RAS-related GTP-binding 99.9 3.5E-23 1.2E-27 139.9 10.1 120 11-132 14-143 (196)
98 4djt_A GTP-binding nuclear pro 99.9 5.5E-23 1.9E-27 140.8 10.6 119 14-133 8-132 (218)
99 2ged_A SR-beta, signal recogni 99.9 1.3E-23 4.4E-28 141.3 6.8 130 14-144 45-182 (193)
100 1nrj_B SR-beta, signal recogni 99.9 3.8E-23 1.3E-27 141.6 8.8 120 12-136 7-138 (218)
101 2zej_A Dardarin, leucine-rich 99.9 1.5E-23 5.2E-28 140.3 6.1 115 17-133 2-127 (184)
102 3r7w_B Gtpase2, GTP-binding pr 99.9 9.8E-24 3.4E-28 151.8 5.2 112 19-133 1-121 (331)
103 2cjw_A GTP-binding protein GEM 99.9 9.2E-22 3.2E-26 132.6 12.8 134 15-148 4-149 (192)
104 2lkc_A Translation initiation 99.9 3E-21 1E-25 127.9 14.5 116 13-133 4-122 (178)
105 3th5_A RAS-related C3 botulinu 99.8 7.1E-24 2.4E-28 144.0 0.0 120 13-133 26-149 (204)
106 2wji_A Ferrous iron transport 99.9 5.5E-21 1.9E-25 125.8 13.5 126 16-148 2-142 (165)
107 2dyk_A GTP-binding protein; GT 99.9 6E-21 2E-25 124.5 12.0 122 18-145 2-135 (161)
108 2wkq_A NPH1-1, RAS-related C3 99.9 7.7E-21 2.6E-25 137.4 12.6 117 15-132 153-273 (332)
109 2wjg_A FEOB, ferrous iron tran 99.9 1.6E-20 5.6E-25 125.5 13.3 127 15-148 5-146 (188)
110 2f9l_A RAB11B, member RAS onco 99.9 3.7E-20 1.3E-24 125.2 14.9 133 15-148 3-145 (199)
111 3a1s_A Iron(II) transport prot 99.9 1.4E-20 4.8E-25 132.4 13.2 128 15-149 3-145 (258)
112 2gj8_A MNME, tRNA modification 99.8 5.4E-21 1.8E-25 126.7 9.8 115 16-132 3-129 (172)
113 2qu8_A Putative nucleolar GTP- 99.8 2.7E-20 9.1E-25 128.5 13.3 117 15-133 27-157 (228)
114 1wf3_A GTP-binding protein; GT 99.8 4.2E-20 1.4E-24 132.6 14.4 126 15-143 5-143 (301)
115 3i8s_A Ferrous iron transport 99.8 2.2E-20 7.4E-25 132.5 12.7 126 16-148 2-146 (274)
116 3iby_A Ferrous iron transport 99.8 1.5E-20 5.2E-25 132.0 11.8 125 18-149 2-145 (256)
117 3iev_A GTP-binding protein ERA 99.8 4.4E-20 1.5E-24 132.9 14.4 120 11-134 4-139 (308)
118 2cxx_A Probable GTP-binding pr 99.8 8.1E-22 2.8E-26 131.9 3.8 127 18-146 2-152 (190)
119 1svi_A GTP-binding protein YSX 99.8 2.2E-20 7.4E-25 125.6 10.6 119 11-135 17-151 (195)
120 3lxw_A GTPase IMAP family memb 99.8 1.7E-19 5.8E-24 126.1 13.6 120 13-133 17-154 (247)
121 3def_A T7I23.11 protein; chlor 99.8 5.4E-20 1.9E-24 129.6 11.2 116 15-131 34-164 (262)
122 3k53_A Ferrous iron transport 99.8 1.9E-19 6.6E-24 127.3 13.8 127 16-148 2-143 (271)
123 1oix_A RAS-related protein RAB 99.8 5E-19 1.7E-23 119.1 15.0 133 15-148 27-169 (191)
124 3b1v_A Ferrous iron uptake tra 99.8 5.7E-20 2E-24 130.1 10.4 124 17-148 3-141 (272)
125 3pqc_A Probable GTP-binding pr 99.8 3.6E-20 1.2E-24 124.3 8.8 120 11-135 17-150 (195)
126 3c5h_A Glucocorticoid receptor 99.8 6.9E-21 2.4E-25 133.7 4.5 120 14-133 16-213 (255)
127 4dhe_A Probable GTP-binding pr 99.8 7E-20 2.4E-24 125.6 7.7 120 11-135 23-161 (223)
128 3lxx_A GTPase IMAP family memb 99.8 1.7E-19 5.9E-24 125.3 9.0 134 11-146 23-184 (239)
129 3dpu_A RAB family protein; roc 99.8 3.1E-19 1E-23 137.0 10.7 116 14-134 38-166 (535)
130 3sjy_A Translation initiation 99.8 9.5E-19 3.3E-23 130.1 11.3 120 12-134 3-145 (403)
131 2xtp_A GTPase IMAP family memb 99.8 6.6E-18 2.3E-22 118.6 14.2 118 14-133 19-154 (260)
132 1h65_A Chloroplast outer envel 99.8 1.4E-18 4.7E-23 122.9 10.1 118 15-133 37-169 (270)
133 3gee_A MNME, tRNA modification 99.8 1E-18 3.5E-23 132.1 9.9 118 15-135 231-360 (476)
134 1mky_A Probable GTP-binding pr 99.8 2.9E-18 1E-22 128.8 12.3 111 18-133 2-125 (439)
135 4fid_A G protein alpha subunit 99.8 2.1E-18 7.3E-23 124.9 10.7 86 47-132 147-242 (340)
136 3qq5_A Small GTP-binding prote 99.8 3.3E-19 1.1E-23 132.9 6.5 129 13-148 30-173 (423)
137 2hjg_A GTP-binding protein ENG 99.8 9.6E-19 3.3E-23 131.3 9.0 114 16-134 174-302 (436)
138 1ega_A Protein (GTP-binding pr 99.8 3.8E-18 1.3E-22 122.4 10.3 112 15-132 6-130 (301)
139 2hjg_A GTP-binding protein ENG 99.8 9.7E-19 3.3E-23 131.3 7.3 112 17-133 3-126 (436)
140 3ohm_A Guanine nucleotide-bind 99.8 1.3E-17 4.5E-22 120.4 12.2 86 47-132 153-248 (327)
141 3tr5_A RF-3, peptide chain rel 99.8 1.7E-17 5.9E-22 126.9 13.5 126 15-145 11-164 (528)
142 1lnz_A SPO0B-associated GTP-bi 99.7 4.5E-18 1.5E-22 123.8 9.4 127 18-144 159-301 (342)
143 2h5e_A Peptide chain release f 99.7 1.5E-17 5.2E-22 127.2 12.7 127 15-146 11-165 (529)
144 1xzp_A Probable tRNA modificat 99.7 6E-18 2.1E-22 128.1 10.2 120 16-142 242-374 (482)
145 1cip_A Protein (guanine nucleo 99.7 1.2E-17 4.2E-22 121.9 11.2 84 48-131 180-273 (353)
146 2e87_A Hypothetical protein PH 99.7 5.5E-17 1.9E-21 118.9 14.7 118 15-134 165-296 (357)
147 1zun_B Sulfate adenylate trans 99.7 3.2E-17 1.1E-21 122.9 13.8 123 6-132 13-171 (434)
148 1jny_A EF-1-alpha, elongation 99.7 6.2E-18 2.1E-22 126.9 9.8 115 15-132 4-158 (435)
149 3p26_A Elongation factor 1 alp 99.7 1.1E-17 3.7E-22 127.0 11.2 116 15-132 31-185 (483)
150 3j2k_7 ERF3, eukaryotic polype 99.7 8.7E-18 3E-22 126.1 10.0 114 15-132 15-169 (439)
151 3izq_1 HBS1P, elongation facto 99.7 4.9E-18 1.7E-22 131.9 8.0 116 15-132 165-319 (611)
152 2c78_A Elongation factor TU-A; 99.7 3E-17 1E-21 122.1 11.7 113 15-132 9-142 (405)
153 4dcu_A GTP-binding protein ENG 99.7 1.7E-18 5.7E-23 130.6 4.8 116 13-133 19-146 (456)
154 3t5d_A Septin-7; GTP-binding p 99.7 4.8E-17 1.6E-21 115.2 11.7 115 16-135 7-161 (274)
155 4dcu_A GTP-binding protein ENG 99.7 8.6E-18 2.9E-22 126.8 8.3 114 15-133 193-321 (456)
156 1wb1_A Translation elongation 99.7 1.8E-17 6.1E-22 125.7 9.7 114 15-133 17-140 (482)
157 1dar_A EF-G, elongation factor 99.7 7.9E-17 2.7E-21 126.7 13.0 127 14-145 9-159 (691)
158 1f60_A Elongation factor EEF1A 99.7 5.7E-17 1.9E-21 122.3 11.4 114 15-132 5-159 (458)
159 1s0u_A EIF-2-gamma, translatio 99.7 1.1E-16 3.7E-21 119.2 12.7 117 15-134 6-151 (408)
160 3geh_A MNME, tRNA modification 99.7 1.8E-17 6E-22 125.0 8.5 112 15-133 222-345 (462)
161 2elf_A Protein translation elo 99.7 2.2E-17 7.5E-22 121.4 8.8 103 19-133 23-127 (370)
162 1d2e_A Elongation factor TU (E 99.7 2.6E-17 9E-22 122.2 9.2 112 16-132 2-133 (397)
163 3cb4_D GTP-binding protein LEP 99.7 5.2E-17 1.8E-21 125.6 11.2 126 16-146 3-154 (599)
164 2ywe_A GTP-binding protein LEP 99.7 1.3E-16 4.3E-21 123.4 12.6 126 15-145 4-155 (600)
165 1r5b_A Eukaryotic peptide chai 99.7 1.1E-16 3.6E-21 121.1 11.6 115 14-132 40-195 (467)
166 1g7s_A Translation initiation 99.7 2.3E-17 7.8E-22 127.6 7.9 110 15-132 3-136 (594)
167 2qpt_A EH domain-containing pr 99.7 2.9E-17 9.8E-22 126.2 8.2 125 15-143 63-243 (550)
168 1kk1_A EIF2gamma; initiation o 99.7 8.1E-17 2.8E-21 120.0 10.1 118 14-134 7-153 (410)
169 3izy_P Translation initiation 99.7 1.9E-18 6.6E-23 131.9 1.3 114 15-133 2-119 (537)
170 2xex_A Elongation factor G; GT 99.7 3.2E-16 1.1E-20 123.4 13.8 127 14-145 7-157 (693)
171 2xtz_A Guanine nucleotide-bind 99.7 7.2E-17 2.4E-21 117.9 9.2 74 59-132 181-264 (354)
172 2qtf_A Protein HFLX, GTP-bindi 99.7 1.6E-16 5.5E-21 116.6 10.3 116 17-134 178-308 (364)
173 1mky_A Probable GTP-binding pr 99.7 3E-16 1E-20 117.8 11.8 113 16-133 179-307 (439)
174 1zo1_I IF2, translation initia 99.7 1E-17 3.6E-22 127.0 3.8 113 15-132 2-117 (501)
175 1n0u_A EF-2, elongation factor 99.7 3.1E-16 1E-20 125.7 11.4 113 15-132 17-164 (842)
176 1jwy_B Dynamin A GTPase domain 99.7 3.4E-16 1.2E-20 112.6 10.4 118 15-135 22-215 (315)
177 2rdo_7 EF-G, elongation factor 99.7 2.3E-15 7.9E-20 118.6 14.5 125 15-144 8-163 (704)
178 2qag_A Septin-2, protein NEDD5 99.7 8.8E-17 3E-21 117.9 5.9 115 15-134 35-190 (361)
179 3mca_A HBS1, elongation factor 99.7 6E-18 2.1E-22 131.0 -0.7 115 14-132 174-329 (592)
180 2aka_B Dynamin-1; fusion prote 99.6 1.7E-15 5.7E-20 108.2 11.6 116 15-134 24-208 (299)
181 2dy1_A Elongation factor G; tr 99.6 3.4E-15 1.2E-19 117.1 13.9 125 14-144 6-154 (665)
182 3t34_A Dynamin-related protein 99.6 1.4E-15 4.9E-20 111.5 10.6 113 18-133 35-218 (360)
183 3vqt_A RF-3, peptide chain rel 99.6 5.4E-15 1.9E-19 113.6 11.2 126 15-145 29-182 (548)
184 3avx_A Elongation factor TS, e 99.6 3.5E-15 1.2E-19 121.4 9.9 113 15-132 294-426 (1289)
185 1azs_C GS-alpha; complex (lyas 99.6 1.1E-14 3.6E-19 107.8 10.2 85 48-132 204-298 (402)
186 2j69_A Bacterial dynamin-like 99.6 5.1E-15 1.7E-19 116.6 8.4 116 14-133 66-245 (695)
187 1wxq_A GTP-binding protein; st 99.6 5.7E-15 1.9E-19 109.5 7.4 80 18-97 1-114 (397)
188 1pui_A ENGB, probable GTP-bind 99.5 1.9E-14 6.4E-19 97.6 8.2 116 12-133 21-152 (210)
189 1zcb_A G alpha I/13; GTP-bindi 99.5 2.4E-14 8.2E-19 104.9 8.5 84 48-131 188-281 (362)
190 2x2e_A Dynamin-1; nitration, h 99.5 1.9E-13 6.5E-18 100.0 10.6 116 15-134 29-213 (353)
191 4fn5_A EF-G 1, elongation fact 99.5 4.2E-13 1.4E-17 106.1 12.4 126 15-145 11-167 (709)
192 4a9a_A Ribosome-interacting GT 99.5 2.9E-13 9.9E-18 99.4 10.1 112 17-131 72-195 (376)
193 2qag_C Septin-7; cell cycle, c 99.5 3.4E-13 1.1E-17 100.5 10.0 115 15-133 29-182 (418)
194 1jal_A YCHF protein; nucleotid 99.5 1.8E-12 6E-17 94.8 13.2 79 18-96 3-108 (363)
195 3j25_A Tetracycline resistance 99.5 1.9E-14 6.7E-19 112.4 3.1 124 17-145 2-149 (638)
196 1udx_A The GTP-binding protein 99.5 4.1E-13 1.4E-17 100.0 9.9 121 18-139 158-290 (416)
197 2qnr_A Septin-2, protein NEDD5 99.4 7.6E-13 2.6E-17 94.9 7.9 129 15-148 16-192 (301)
198 3p32_A Probable GTPase RV1496/ 99.3 3.3E-12 1.1E-16 93.5 6.4 64 59-134 170-233 (355)
199 1u0l_A Probable GTPase ENGC; p 99.3 9.9E-13 3.4E-17 94.2 3.4 106 32-144 32-144 (301)
200 2ohf_A Protein OLA1, GTP-bindi 99.3 4E-12 1.4E-16 93.8 6.3 85 15-99 20-131 (396)
201 3l82_B F-box only protein 4; T 99.3 6E-12 2.1E-16 85.0 5.7 147 5-153 4-197 (227)
202 2www_A Methylmalonic aciduria 99.3 9.5E-12 3.2E-16 90.9 6.7 107 15-133 72-227 (349)
203 3zvr_A Dynamin-1; hydrolase, D 99.2 2.5E-10 8.4E-15 90.4 11.8 116 15-134 49-233 (772)
204 1yrb_A ATP(GTP)binding protein 99.1 4.6E-11 1.6E-15 83.5 4.6 73 61-134 109-187 (262)
205 2wsm_A Hydrogenase expression/ 99.1 1.3E-10 4.3E-15 79.3 6.6 107 15-133 28-169 (221)
206 2p67_A LAO/AO transport system 99.1 3E-11 1E-15 88.0 3.7 63 59-133 147-209 (341)
207 2dby_A GTP-binding protein; GD 99.1 2.3E-10 7.8E-15 84.0 7.4 79 18-96 2-111 (368)
208 3l2o_B F-box only protein 4; s 99.1 6.8E-11 2.3E-15 83.5 3.0 84 68-153 194-282 (312)
209 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 1.6E-09 5.6E-14 80.0 9.9 82 15-96 18-127 (392)
210 3ec1_A YQEH GTPase; atnos1, at 99.0 9.3E-11 3.2E-15 86.2 3.0 111 17-133 162-289 (369)
211 3sop_A Neuronal-specific septi 99.0 1.5E-09 5E-14 76.7 6.6 117 17-138 2-160 (270)
212 2qag_B Septin-6, protein NEDD5 98.9 6.7E-09 2.3E-13 77.4 10.2 116 18-139 43-197 (427)
213 3h2y_A GTPase family protein; 98.9 5.1E-10 1.7E-14 82.3 3.7 113 17-135 160-290 (368)
214 2j37_W Signal recognition part 98.8 3.6E-08 1.2E-12 75.1 11.3 125 15-147 99-270 (504)
215 2qm8_A GTPase/ATPase; G protei 98.8 1.1E-08 3.6E-13 74.4 6.6 107 14-132 52-207 (337)
216 2hf9_A Probable hydrogenase ni 98.7 6.6E-08 2.2E-12 65.9 7.5 27 15-41 36-62 (226)
217 3cnl_A YLQF, putative uncharac 98.6 8.5E-09 2.9E-13 72.4 1.7 55 18-73 100-156 (262)
218 1puj_A YLQF, conserved hypothe 98.6 3.6E-08 1.2E-12 69.9 4.1 58 14-72 117-176 (282)
219 1f5n_A Interferon-induced guan 98.3 8E-07 2.7E-11 68.8 6.3 59 14-72 35-102 (592)
220 2v3c_C SRP54, signal recogniti 98.3 9.4E-07 3.2E-11 66.2 6.5 122 17-146 99-267 (432)
221 3szr_A Interferon-induced GTP- 98.3 6.2E-07 2.1E-11 69.9 5.2 23 19-41 47-69 (608)
222 2yv5_A YJEQ protein; hydrolase 98.3 9.7E-07 3.3E-11 63.1 5.1 59 71-133 66-125 (302)
223 1tq4_A IIGP1, interferon-induc 98.2 4E-06 1.4E-10 62.4 7.6 109 16-131 68-188 (413)
224 3dm5_A SRP54, signal recogniti 98.2 5E-06 1.7E-10 62.3 7.8 125 16-147 99-269 (443)
225 1j8m_F SRP54, signal recogniti 98.0 1.4E-05 4.9E-10 57.0 6.2 123 17-147 98-269 (297)
226 3kl4_A SRP54, signal recogniti 98.0 4.6E-05 1.6E-09 57.1 8.7 124 16-146 96-267 (433)
227 2xxa_A Signal recognition part 97.8 0.00013 4.4E-09 54.7 8.8 123 16-146 99-269 (433)
228 1bif_A 6-phosphofructo-2-kinas 97.8 2.5E-06 8.6E-11 64.5 -0.6 83 15-97 37-133 (469)
229 1ye8_A Protein THEP1, hypothet 97.7 2.4E-05 8.3E-10 51.6 3.2 23 18-40 1-23 (178)
230 1puj_A YLQF, conserved hypothe 97.7 3E-05 1E-09 54.9 3.4 68 65-139 3-71 (282)
231 1kgd_A CASK, peripheral plasma 97.6 2.7E-05 9.4E-10 51.3 2.9 23 17-39 5-27 (180)
232 3end_A Light-independent proto 97.6 0.0014 4.6E-08 46.6 12.0 86 60-149 156-242 (307)
233 2bbw_A Adenylate kinase 4, AK4 97.6 3.5E-05 1.2E-09 53.2 3.5 32 7-38 17-48 (246)
234 1lvg_A Guanylate kinase, GMP k 97.6 3.3E-05 1.1E-09 51.7 2.9 23 17-39 4-26 (198)
235 3ec2_A DNA replication protein 97.6 6E-05 2.1E-09 49.4 3.6 32 9-40 30-61 (180)
236 1s96_A Guanylate kinase, GMP k 97.5 5.3E-05 1.8E-09 51.7 2.9 26 15-40 14-39 (219)
237 3a00_A Guanylate kinase, GMP k 97.5 5.3E-05 1.8E-09 50.1 2.8 21 19-39 3-23 (186)
238 4dzz_A Plasmid partitioning pr 97.5 0.00081 2.8E-08 44.7 8.6 84 60-148 75-162 (206)
239 1ex7_A Guanylate kinase; subst 97.5 6.2E-05 2.1E-09 50.0 3.0 21 20-40 4-24 (186)
240 3tr0_A Guanylate kinase, GMP k 97.5 6E-05 2.1E-09 50.3 2.9 24 17-40 7-30 (205)
241 3q5d_A Atlastin-1; G protein, 97.5 0.00015 5.1E-09 54.5 5.2 27 14-40 64-90 (447)
242 1znw_A Guanylate kinase, GMP k 97.5 6.1E-05 2.1E-09 50.7 2.9 28 13-40 16-43 (207)
243 1zp6_A Hypothetical protein AT 97.5 8.3E-05 2.9E-09 49.1 3.5 25 16-40 8-32 (191)
244 3ney_A 55 kDa erythrocyte memb 97.5 9.5E-05 3.3E-09 49.6 3.6 26 15-40 17-42 (197)
245 4gp7_A Metallophosphoesterase; 97.5 6.2E-05 2.1E-09 49.2 2.6 23 16-38 8-30 (171)
246 3tau_A Guanylate kinase, GMP k 97.5 9.3E-05 3.2E-09 49.8 3.6 26 15-40 6-31 (208)
247 1z6g_A Guanylate kinase; struc 97.4 6.9E-05 2.3E-09 50.9 2.9 26 15-40 21-46 (218)
248 3c8u_A Fructokinase; YP_612366 97.4 8.5E-05 2.9E-09 50.0 3.2 25 15-39 20-44 (208)
249 3tif_A Uncharacterized ABC tra 97.4 9.2E-05 3.1E-09 51.0 2.9 26 15-40 29-54 (235)
250 3h2y_A GTPase family protein; 97.4 8.8E-05 3E-09 54.4 2.9 58 70-134 55-112 (368)
251 1jbk_A CLPB protein; beta barr 97.4 0.00021 7.2E-09 46.6 4.5 27 14-40 40-66 (195)
252 3asz_A Uridine kinase; cytidin 97.3 0.00013 4.5E-09 49.0 3.2 25 15-39 4-28 (211)
253 2qor_A Guanylate kinase; phosp 97.3 0.00012 4E-09 49.1 2.9 25 15-39 10-34 (204)
254 2pcj_A ABC transporter, lipopr 97.3 0.00012 4E-09 50.1 2.9 25 16-40 29-53 (224)
255 1htw_A HI0065; nucleotide-bind 97.3 0.00013 4.3E-09 47.2 2.9 27 15-41 31-57 (158)
256 3t61_A Gluconokinase; PSI-biol 97.3 0.00013 4.6E-09 48.6 3.1 25 15-39 16-40 (202)
257 2j41_A Guanylate kinase; GMP, 97.3 0.00016 5.4E-09 48.3 3.4 25 16-40 5-29 (207)
258 3lw7_A Adenylate kinase relate 97.3 0.00016 5.6E-09 46.6 3.2 20 18-37 2-21 (179)
259 1kag_A SKI, shikimate kinase I 97.3 0.00015 5E-09 47.1 2.9 22 18-39 5-26 (173)
260 2onk_A Molybdate/tungstate ABC 97.3 0.00015 5E-09 50.1 3.0 23 18-40 25-47 (240)
261 3ec1_A YQEH GTPase; atnos1, at 97.3 0.0001 3.4E-09 54.2 2.3 58 70-134 57-114 (369)
262 2cdn_A Adenylate kinase; phosp 97.3 0.0002 7E-09 47.7 3.6 28 12-39 15-42 (201)
263 1ly1_A Polynucleotide kinase; 97.3 0.00017 5.9E-09 46.9 3.2 22 18-39 3-24 (181)
264 2bdt_A BH3686; alpha-beta prot 97.3 0.00015 5.1E-09 47.9 2.9 21 19-39 4-24 (189)
265 3gfo_A Cobalt import ATP-bindi 97.3 0.00015 5E-09 51.2 3.0 25 16-40 33-57 (275)
266 1b0u_A Histidine permease; ABC 97.3 0.00015 5.2E-09 50.7 3.0 25 16-40 31-55 (262)
267 1knq_A Gluconate kinase; ALFA/ 97.3 0.00021 7.2E-09 46.5 3.5 24 16-39 7-30 (175)
268 1sgw_A Putative ABC transporte 97.3 0.00016 5.6E-09 49.0 3.0 24 17-40 35-58 (214)
269 2cbz_A Multidrug resistance-as 97.3 0.00018 6E-09 49.6 3.2 25 16-40 30-54 (237)
270 4eun_A Thermoresistant glucoki 97.3 0.0002 7E-09 47.8 3.4 24 16-39 28-51 (200)
271 2eyu_A Twitching motility prot 97.3 0.00016 5.5E-09 50.6 2.9 26 14-39 22-47 (261)
272 2rcn_A Probable GTPase ENGC; Y 97.3 0.00018 6.1E-09 52.6 3.3 25 17-41 215-239 (358)
273 3kb2_A SPBC2 prophage-derived 97.2 0.00018 6.3E-09 46.4 3.0 21 19-39 3-23 (173)
274 4g1u_C Hemin import ATP-bindin 97.2 0.00017 5.7E-09 50.6 2.9 25 16-40 36-60 (266)
275 1mv5_A LMRA, multidrug resista 97.2 0.00019 6.6E-09 49.6 3.2 26 15-40 26-51 (243)
276 1g6h_A High-affinity branched- 97.2 0.00017 5.8E-09 50.3 2.9 25 16-40 32-56 (257)
277 1y63_A LMAJ004144AAA protein; 97.2 0.00025 8.6E-09 46.7 3.6 27 14-40 7-33 (184)
278 2p65_A Hypothetical protein PF 97.2 0.00026 8.8E-09 46.1 3.6 27 13-39 39-65 (187)
279 2ff7_A Alpha-hemolysin translo 97.2 0.0002 6.8E-09 49.7 3.2 25 16-40 34-58 (247)
280 3vaa_A Shikimate kinase, SK; s 97.2 0.00023 8E-09 47.4 3.4 24 16-39 24-47 (199)
281 2pze_A Cystic fibrosis transme 97.2 0.00021 7.2E-09 49.0 3.2 25 16-40 33-57 (229)
282 2olj_A Amino acid ABC transpor 97.2 0.00019 6.4E-09 50.3 3.0 25 16-40 49-73 (263)
283 1ji0_A ABC transporter; ATP bi 97.2 0.00019 6.7E-09 49.5 2.9 25 16-40 31-55 (240)
284 3fb4_A Adenylate kinase; psych 97.2 0.00022 7.6E-09 48.0 3.2 21 18-38 1-21 (216)
285 2i3b_A HCR-ntpase, human cance 97.2 0.00019 6.4E-09 47.8 2.7 21 19-39 3-23 (189)
286 2qi9_C Vitamin B12 import ATP- 97.2 0.0002 6.9E-09 49.7 3.0 25 16-40 25-49 (249)
287 1np6_A Molybdopterin-guanine d 97.2 0.00021 7.3E-09 46.9 2.9 24 17-40 6-29 (174)
288 3uie_A Adenylyl-sulfate kinase 97.2 0.00025 8.5E-09 47.3 3.3 26 14-39 22-47 (200)
289 1qhx_A CPT, protein (chloramph 97.2 0.00022 7.4E-09 46.5 2.9 22 18-39 4-25 (178)
290 1vpl_A ABC transporter, ATP-bi 97.2 0.00021 7.1E-09 49.9 3.0 25 16-40 40-64 (256)
291 2ghi_A Transport protein; mult 97.2 0.00023 7.7E-09 49.8 3.2 26 15-40 44-69 (260)
292 2d2e_A SUFC protein; ABC-ATPas 97.2 0.00021 7.3E-09 49.6 3.0 25 16-40 28-52 (250)
293 1cke_A CK, MSSA, protein (cyti 97.2 0.00027 9.4E-09 47.8 3.5 23 17-39 5-27 (227)
294 1t9h_A YLOQ, probable GTPase E 97.2 0.00073 2.5E-08 48.4 5.8 52 80-134 82-133 (307)
295 3dl0_A Adenylate kinase; phosp 97.2 0.00024 8.2E-09 47.9 3.2 22 18-39 1-22 (216)
296 2rhm_A Putative kinase; P-loop 97.2 0.00027 9.1E-09 46.6 3.3 24 16-39 4-27 (193)
297 1kht_A Adenylate kinase; phosp 97.2 0.00026 9E-09 46.5 3.3 22 17-38 3-24 (192)
298 2zu0_C Probable ATP-dependent 97.2 0.00023 7.8E-09 50.0 3.0 25 16-40 45-69 (267)
299 2ihy_A ABC transporter, ATP-bi 97.2 0.00025 8.6E-09 50.1 3.2 25 16-40 46-70 (279)
300 3trf_A Shikimate kinase, SK; a 97.2 0.00027 9.3E-09 46.3 3.2 22 17-38 5-26 (185)
301 3tqc_A Pantothenate kinase; bi 97.2 0.0004 1.4E-08 50.0 4.3 29 10-38 85-113 (321)
302 1uj2_A Uridine-cytidine kinase 97.2 0.00026 9E-09 49.0 3.3 25 15-39 20-44 (252)
303 1aky_A Adenylate kinase; ATP:A 97.2 0.00029 1E-08 47.6 3.4 24 16-39 3-26 (220)
304 2ixe_A Antigen peptide transpo 97.2 0.00026 8.8E-09 49.8 3.2 25 16-40 44-68 (271)
305 3cnl_A YLQF, putative uncharac 97.2 0.00011 3.7E-09 51.5 1.2 59 68-135 4-63 (262)
306 2yvu_A Probable adenylyl-sulfa 97.2 0.00034 1.2E-08 46.0 3.6 26 14-39 10-35 (186)
307 2v9p_A Replication protein E1; 97.1 0.00028 9.7E-09 50.4 3.4 26 14-39 123-148 (305)
308 2ehv_A Hypothetical protein PH 97.1 0.00025 8.6E-09 48.6 3.0 24 15-38 28-51 (251)
309 3b85_A Phosphate starvation-in 97.1 0.00017 5.8E-09 48.7 2.1 25 16-40 21-45 (208)
310 2nq2_C Hypothetical ABC transp 97.1 0.00024 8.3E-09 49.4 2.9 25 16-40 30-54 (253)
311 3cm0_A Adenylate kinase; ATP-b 97.1 0.00031 1E-08 46.1 3.2 22 17-38 4-25 (186)
312 2yz2_A Putative ABC transporte 97.1 0.00025 8.6E-09 49.7 2.9 25 16-40 32-56 (266)
313 3iij_A Coilin-interacting nucl 97.1 0.0003 1E-08 46.0 3.1 24 15-38 9-32 (180)
314 2if2_A Dephospho-COA kinase; a 97.1 0.00029 1E-08 47.0 3.2 22 18-39 2-23 (204)
315 4a74_A DNA repair and recombin 97.1 0.00025 8.5E-09 48.0 2.8 24 16-39 24-47 (231)
316 3umf_A Adenylate kinase; rossm 97.1 0.00037 1.3E-08 47.4 3.6 22 18-39 30-51 (217)
317 2jeo_A Uridine-cytidine kinase 97.1 0.00032 1.1E-08 48.3 3.4 25 15-39 23-47 (245)
318 1u0l_A Probable GTPase ENGC; p 97.1 0.00025 8.7E-09 50.5 2.8 25 17-41 169-193 (301)
319 1t9h_A YLOQ, probable GTPase E 97.1 9.3E-05 3.2E-09 53.0 0.5 24 17-40 173-196 (307)
320 3aez_A Pantothenate kinase; tr 97.1 0.00035 1.2E-08 50.2 3.4 26 14-39 87-112 (312)
321 1sq5_A Pantothenate kinase; P- 97.1 0.00051 1.7E-08 49.1 4.3 25 15-39 78-102 (308)
322 3tlx_A Adenylate kinase 2; str 97.1 0.00038 1.3E-08 48.0 3.5 25 15-39 27-51 (243)
323 1uf9_A TT1252 protein; P-loop, 97.1 0.00038 1.3E-08 46.2 3.4 27 14-40 5-31 (203)
324 2pjz_A Hypothetical protein ST 97.1 0.00034 1.1E-08 49.0 3.2 25 17-41 30-54 (263)
325 1nks_A Adenylate kinase; therm 97.1 0.00034 1.2E-08 46.0 3.1 21 19-39 3-23 (194)
326 1gvn_B Zeta; postsegregational 97.1 0.00035 1.2E-08 49.5 3.3 25 15-39 31-55 (287)
327 2jaq_A Deoxyguanosine kinase; 97.1 0.00036 1.2E-08 46.3 3.2 21 19-39 2-22 (205)
328 1zd8_A GTP:AMP phosphotransfer 97.1 0.00035 1.2E-08 47.5 3.2 23 16-38 6-28 (227)
329 1tue_A Replication protein E1; 97.1 0.00044 1.5E-08 46.6 3.5 33 5-39 48-80 (212)
330 1zak_A Adenylate kinase; ATP:A 97.1 0.00033 1.1E-08 47.5 2.9 24 16-39 4-27 (222)
331 2x8a_A Nuclear valosin-contain 97.1 0.00062 2.1E-08 47.9 4.4 23 18-40 45-67 (274)
332 2qt1_A Nicotinamide riboside k 97.1 0.00046 1.6E-08 46.2 3.6 26 15-40 19-44 (207)
333 1jjv_A Dephospho-COA kinase; P 97.1 0.00041 1.4E-08 46.4 3.3 22 18-39 3-24 (206)
334 2yv5_A YJEQ protein; hydrolase 97.1 0.00033 1.1E-08 50.0 3.0 22 17-38 165-186 (302)
335 1tev_A UMP-CMP kinase; ploop, 97.1 0.0004 1.4E-08 45.7 3.2 22 17-38 3-24 (196)
336 3lnc_A Guanylate kinase, GMP k 97.1 0.00022 7.7E-09 48.6 2.0 23 16-38 26-48 (231)
337 2plr_A DTMP kinase, probable t 97.0 0.00042 1.4E-08 46.2 3.3 23 17-39 4-26 (213)
338 3sr0_A Adenylate kinase; phosp 97.0 0.0004 1.4E-08 46.8 3.2 22 18-39 1-22 (206)
339 2v54_A DTMP kinase, thymidylat 97.0 0.00048 1.6E-08 45.8 3.5 25 16-40 3-27 (204)
340 2c95_A Adenylate kinase 1; tra 97.0 0.00048 1.7E-08 45.4 3.4 23 16-38 8-30 (196)
341 1lw7_A Transcriptional regulat 97.0 0.00033 1.1E-08 51.2 2.8 24 17-40 170-193 (365)
342 2f1r_A Molybdopterin-guanine d 97.0 0.00019 6.4E-09 47.1 1.3 22 19-40 4-25 (171)
343 1ixz_A ATP-dependent metallopr 97.0 0.0007 2.4E-08 46.7 4.3 23 18-40 50-72 (254)
344 1ukz_A Uridylate kinase; trans 97.0 0.00053 1.8E-08 45.7 3.5 24 15-38 13-36 (203)
345 1d2n_A N-ethylmaleimide-sensit 97.0 0.00067 2.3E-08 47.3 4.2 27 14-40 61-87 (272)
346 2bbs_A Cystic fibrosis transme 97.0 0.00042 1.4E-08 49.2 3.1 25 16-40 63-87 (290)
347 3jvv_A Twitching mobility prot 97.0 0.00047 1.6E-08 50.4 3.4 24 16-39 122-145 (356)
348 1e4v_A Adenylate kinase; trans 97.0 0.00045 1.5E-08 46.5 3.1 22 18-39 1-22 (214)
349 3bos_A Putative DNA replicatio 97.0 0.00072 2.5E-08 45.8 4.2 24 16-39 51-74 (242)
350 3nh6_A ATP-binding cassette SU 97.0 0.00028 9.5E-09 50.5 2.1 26 15-40 78-103 (306)
351 3be4_A Adenylate kinase; malar 97.0 0.00052 1.8E-08 46.4 3.3 24 16-39 4-27 (217)
352 4e22_A Cytidylate kinase; P-lo 97.0 0.00056 1.9E-08 47.4 3.6 24 15-38 25-48 (252)
353 2vli_A Antibiotic resistance p 97.0 0.00029 1E-08 46.0 2.0 23 16-38 4-26 (183)
354 1nn5_A Similar to deoxythymidy 97.0 0.00053 1.8E-08 45.9 3.4 24 16-39 8-31 (215)
355 3fvq_A Fe(3+) IONS import ATP- 97.0 0.00041 1.4E-08 50.7 2.9 25 16-40 29-53 (359)
356 2wwf_A Thymidilate kinase, put 97.0 0.00059 2E-08 45.6 3.5 24 16-39 9-32 (212)
357 2kjq_A DNAA-related protein; s 97.0 0.00028 9.7E-09 45.0 1.8 25 16-40 35-59 (149)
358 1xjc_A MOBB protein homolog; s 97.0 0.00059 2E-08 44.6 3.3 23 17-39 4-26 (169)
359 3tui_C Methionine import ATP-b 97.0 0.00046 1.6E-08 50.5 3.0 25 16-40 53-77 (366)
360 1via_A Shikimate kinase; struc 97.0 0.00044 1.5E-08 45.0 2.7 21 19-39 6-26 (175)
361 2bwj_A Adenylate kinase 5; pho 97.0 0.0006 2.1E-08 45.1 3.4 23 17-39 12-34 (199)
362 1rz3_A Hypothetical protein rb 96.9 0.00064 2.2E-08 45.4 3.5 25 15-39 20-44 (201)
363 1rj9_A FTSY, signal recognitio 96.9 0.00063 2.1E-08 48.6 3.6 125 16-147 101-277 (304)
364 2ewv_A Twitching motility prot 96.9 0.00063 2.2E-08 50.0 3.7 25 15-39 134-158 (372)
365 2pt5_A Shikimate kinase, SK; a 96.9 0.0006 2.1E-08 43.9 3.2 21 19-39 2-22 (168)
366 3h4m_A Proteasome-activating n 96.9 0.00082 2.8E-08 47.1 4.1 26 15-40 49-74 (285)
367 1z47_A CYSA, putative ABC-tran 96.9 0.0005 1.7E-08 50.2 3.0 25 16-40 40-64 (355)
368 2pt7_A CAG-ALFA; ATPase, prote 96.9 0.0005 1.7E-08 49.7 3.0 25 16-40 170-194 (330)
369 2ze6_A Isopentenyl transferase 96.9 0.00051 1.8E-08 47.7 2.9 21 19-39 3-23 (253)
370 1odf_A YGR205W, hypothetical 3 96.9 0.00072 2.5E-08 48.0 3.7 25 14-38 28-52 (290)
371 2gza_A Type IV secretion syste 96.9 0.00048 1.6E-08 50.4 2.9 26 15-40 173-198 (361)
372 2w58_A DNAI, primosome compone 96.9 0.0012 4E-08 43.9 4.5 22 18-39 55-76 (202)
373 2yyz_A Sugar ABC transporter, 96.9 0.00053 1.8E-08 50.1 3.0 25 16-40 28-52 (359)
374 3rlf_A Maltose/maltodextrin im 96.9 0.00054 1.9E-08 50.4 3.0 25 16-40 28-52 (381)
375 2it1_A 362AA long hypothetical 96.9 0.00055 1.9E-08 50.1 3.0 25 16-40 28-52 (362)
376 1in4_A RUVB, holliday junction 96.9 0.00052 1.8E-08 49.6 2.9 23 18-40 52-74 (334)
377 1lv7_A FTSH; alpha/beta domain 96.9 0.00061 2.1E-08 47.1 3.1 23 17-39 45-67 (257)
378 1ak2_A Adenylate kinase isoenz 96.9 0.00076 2.6E-08 46.1 3.5 25 15-39 14-38 (233)
379 1iy2_A ATP-dependent metallopr 96.9 0.0011 3.9E-08 46.4 4.4 22 19-40 75-96 (278)
380 1p9r_A General secretion pathw 96.9 0.00054 1.9E-08 51.1 2.9 25 15-39 165-189 (418)
381 3r20_A Cytidylate kinase; stru 96.9 0.00072 2.5E-08 46.5 3.3 24 15-38 7-30 (233)
382 2vp4_A Deoxynucleoside kinase; 96.9 0.00075 2.6E-08 46.0 3.4 26 15-40 18-43 (230)
383 1g29_1 MALK, maltose transport 96.9 0.0006 2E-08 50.1 3.0 25 16-40 28-52 (372)
384 1v43_A Sugar-binding transport 96.9 0.00061 2.1E-08 50.0 3.0 25 16-40 36-60 (372)
385 3e70_C DPA, signal recognition 96.9 0.0008 2.7E-08 48.6 3.6 25 15-39 127-151 (328)
386 2xb4_A Adenylate kinase; ATP-b 96.9 0.00072 2.5E-08 45.9 3.2 21 19-39 2-22 (223)
387 1qf9_A UMP/CMP kinase, protein 96.8 0.0009 3.1E-08 43.9 3.5 23 17-39 6-28 (194)
388 2w0m_A SSO2452; RECA, SSPF, un 96.8 0.00067 2.3E-08 45.8 2.9 24 16-39 22-45 (235)
389 3b9q_A Chloroplast SRP recepto 96.8 0.00088 3E-08 47.8 3.6 24 16-39 99-122 (302)
390 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.00081 2.8E-08 46.8 3.3 23 17-39 4-26 (260)
391 3kta_A Chromosome segregation 96.8 0.00074 2.5E-08 44.1 3.0 21 19-39 28-48 (182)
392 2p5t_B PEZT; postsegregational 96.8 0.00053 1.8E-08 47.5 2.3 26 14-39 29-54 (253)
393 3t15_A Ribulose bisphosphate c 96.8 0.00063 2.2E-08 48.2 2.8 25 15-39 34-58 (293)
394 1vht_A Dephospho-COA kinase; s 96.8 0.0009 3.1E-08 45.1 3.4 24 16-39 3-26 (218)
395 2pbr_A DTMP kinase, thymidylat 96.8 0.00086 2.9E-08 44.1 3.1 21 19-39 2-22 (195)
396 2oap_1 GSPE-2, type II secreti 96.8 0.00072 2.5E-08 51.7 3.1 25 16-40 259-283 (511)
397 2pez_A Bifunctional 3'-phospho 96.8 0.00097 3.3E-08 43.5 3.3 24 16-39 4-27 (179)
398 3d31_A Sulfate/molybdate ABC t 96.8 0.0005 1.7E-08 50.1 2.0 25 16-40 25-49 (348)
399 1gtv_A TMK, thymidylate kinase 96.8 0.0003 1E-08 47.2 0.7 21 19-39 2-22 (214)
400 2chg_A Replication factor C sm 96.8 0.0012 4.2E-08 43.9 3.8 21 19-39 40-60 (226)
401 3n70_A Transport activator; si 96.8 0.00097 3.3E-08 42.2 3.1 26 15-40 22-47 (145)
402 1e6c_A Shikimate kinase; phosp 96.8 0.00089 3E-08 43.3 2.9 22 18-39 3-24 (173)
403 2z0h_A DTMP kinase, thymidylat 96.7 0.00098 3.4E-08 44.0 3.2 21 19-39 2-22 (197)
404 3gd7_A Fusion complex of cysti 96.7 0.00082 2.8E-08 49.7 2.9 25 16-40 46-70 (390)
405 1zcb_A G alpha I/13; GTP-bindi 96.7 0.001 3.5E-08 48.7 3.4 23 15-37 31-53 (362)
406 2f6r_A COA synthase, bifunctio 96.7 0.0011 3.8E-08 46.7 3.5 24 15-38 73-96 (281)
407 1nij_A Hypothetical protein YJ 96.7 0.00063 2.2E-08 48.8 2.3 23 18-40 5-27 (318)
408 3cf0_A Transitional endoplasmi 96.7 0.0014 4.9E-08 46.5 4.1 26 15-40 47-72 (301)
409 2iyv_A Shikimate kinase, SK; t 96.7 0.00096 3.3E-08 43.7 2.9 21 19-39 4-24 (184)
410 1njg_A DNA polymerase III subu 96.7 0.00097 3.3E-08 44.9 2.9 22 18-39 46-67 (250)
411 2qz4_A Paraplegin; AAA+, SPG7, 96.7 0.0013 4.6E-08 45.3 3.6 25 15-39 37-61 (262)
412 1cr0_A DNA primase/helicase; R 96.7 0.00096 3.3E-08 47.2 2.8 25 15-39 33-57 (296)
413 1p5z_B DCK, deoxycytidine kina 96.7 0.00088 3E-08 46.6 2.6 30 10-39 17-46 (263)
414 1oxx_K GLCV, glucose, ABC tran 96.7 0.00048 1.7E-08 50.2 1.2 25 16-40 30-54 (353)
415 1zuh_A Shikimate kinase; alpha 96.7 0.0013 4.3E-08 42.5 3.1 22 18-39 8-29 (168)
416 2og2_A Putative signal recogni 96.7 0.0014 4.7E-08 48.0 3.6 24 16-39 156-179 (359)
417 2cvh_A DNA repair and recombin 96.7 0.0011 3.7E-08 44.5 2.9 25 15-39 18-42 (220)
418 3syl_A Protein CBBX; photosynt 96.7 0.0014 4.8E-08 46.4 3.6 25 15-39 65-89 (309)
419 3b9p_A CG5977-PA, isoform A; A 96.6 0.0014 4.7E-08 46.2 3.4 24 16-39 53-76 (297)
420 2obl_A ESCN; ATPase, hydrolase 96.6 0.0012 4E-08 48.1 3.1 26 15-40 69-94 (347)
421 1n0w_A DNA repair protein RAD5 96.6 0.0012 4E-08 45.0 2.9 25 15-39 22-46 (243)
422 2npi_A Protein CLP1; CLP1-PCF1 96.6 0.001 3.5E-08 50.2 2.8 26 15-40 136-161 (460)
423 4b4t_M 26S protease regulatory 96.6 0.0019 6.4E-08 48.4 4.2 27 13-39 211-237 (434)
424 2yhs_A FTSY, cell division pro 96.6 0.0015 5.1E-08 49.7 3.6 24 16-39 292-315 (503)
425 1m7g_A Adenylylsulfate kinase; 96.6 0.0016 5.5E-08 43.7 3.4 25 15-39 23-47 (211)
426 1f2t_A RAD50 ABC-ATPase; DNA d 96.6 0.0014 4.9E-08 41.7 3.0 20 19-38 25-44 (149)
427 3pxg_A Negative regulator of g 96.6 0.0018 6.3E-08 48.9 4.0 26 14-39 198-223 (468)
428 4eaq_A DTMP kinase, thymidylat 96.6 0.0018 6.2E-08 44.3 3.6 24 16-39 25-48 (229)
429 1sxj_E Activator 1 40 kDa subu 96.6 0.0019 6.5E-08 46.6 3.9 20 20-39 39-58 (354)
430 1l8q_A Chromosomal replication 96.6 0.0013 4.4E-08 47.1 2.8 23 17-39 37-59 (324)
431 3co5_A Putative two-component 96.5 0.0011 3.6E-08 41.9 2.0 26 15-40 25-50 (143)
432 4b4t_K 26S protease regulatory 96.5 0.0024 8.4E-08 47.7 4.2 25 15-39 204-228 (428)
433 2qgz_A Helicase loader, putati 96.5 0.0031 1.1E-07 45.1 4.6 23 17-39 152-174 (308)
434 1ltq_A Polynucleotide kinase; 96.5 0.0017 5.8E-08 45.9 3.2 22 18-39 3-24 (301)
435 4b4t_L 26S protease subunit RP 96.5 0.0025 8.6E-08 47.8 4.2 26 14-39 212-237 (437)
436 3te6_A Regulatory protein SIR3 96.5 0.0013 4.4E-08 47.3 2.4 27 13-39 41-67 (318)
437 2qby_A CDC6 homolog 1, cell di 96.5 0.0016 5.4E-08 47.3 2.9 25 15-39 43-67 (386)
438 1ofh_A ATP-dependent HSL prote 96.5 0.0018 6E-08 45.7 3.1 24 16-39 49-72 (310)
439 3nwj_A ATSK2; P loop, shikimat 96.5 0.0015 5.2E-08 45.3 2.7 23 17-39 48-70 (250)
440 1svm_A Large T antigen; AAA+ f 96.5 0.002 6.9E-08 47.4 3.4 25 15-39 167-191 (377)
441 1fnn_A CDC6P, cell division co 96.5 0.002 6.9E-08 46.9 3.5 22 19-40 46-67 (389)
442 1yqt_A RNAse L inhibitor; ATP- 96.5 0.0018 6.2E-08 49.8 3.3 25 16-40 46-70 (538)
443 2dpy_A FLII, flagellum-specifi 96.4 0.0018 6.1E-08 48.6 3.1 27 14-40 154-180 (438)
444 1a7j_A Phosphoribulokinase; tr 96.4 0.00091 3.1E-08 47.4 1.4 25 15-39 3-27 (290)
445 1nlf_A Regulatory protein REPA 96.4 0.0018 6E-08 45.5 2.8 24 16-39 29-52 (279)
446 2grj_A Dephospho-COA kinase; T 96.4 0.0021 7.3E-08 42.7 3.1 25 15-39 10-34 (192)
447 3ozx_A RNAse L inhibitor; ATP 96.4 0.0023 8E-08 49.2 3.6 28 13-40 21-48 (538)
448 1sxj_D Activator 1 41 kDa subu 96.4 0.0033 1.1E-07 45.2 4.2 22 19-40 60-81 (353)
449 3euj_A Chromosome partition pr 96.4 0.0018 6.2E-08 49.1 2.9 22 18-39 30-51 (483)
450 3v9p_A DTMP kinase, thymidylat 96.4 0.0018 6.2E-08 44.3 2.7 25 15-39 23-47 (227)
451 4b4t_J 26S protease regulatory 96.4 0.0027 9.1E-08 47.1 3.7 27 13-39 178-204 (405)
452 2qmh_A HPR kinase/phosphorylas 96.4 0.0026 8.9E-08 42.7 3.3 26 15-40 32-57 (205)
453 3b5x_A Lipid A export ATP-bind 96.4 0.002 7E-08 50.0 3.2 26 15-40 367-392 (582)
454 3b60_A Lipid A export ATP-bind 96.4 0.0023 7.9E-08 49.6 3.5 26 15-40 367-392 (582)
455 3qf7_A RAD50; ABC-ATPase, ATPa 96.4 0.0021 7.3E-08 47.0 3.0 20 19-38 25-44 (365)
456 3j16_B RLI1P; ribosome recycli 96.3 0.0021 7.2E-08 50.2 3.0 25 16-40 102-126 (608)
457 1q3t_A Cytidylate kinase; nucl 96.3 0.0029 9.8E-08 43.3 3.4 25 15-39 14-38 (236)
458 1sxj_C Activator 1 40 kDa subu 96.3 0.0021 7E-08 46.4 2.8 22 19-40 48-69 (340)
459 3eie_A Vacuolar protein sortin 96.3 0.0027 9.1E-08 45.5 3.4 23 17-39 51-73 (322)
460 4fcw_A Chaperone protein CLPB; 96.3 0.0029 1E-07 44.7 3.5 22 18-39 48-69 (311)
461 1xwi_A SKD1 protein; VPS4B, AA 96.3 0.0027 9.4E-08 45.6 3.4 24 17-40 45-68 (322)
462 2dr3_A UPF0273 protein PH0284; 96.3 0.0024 8.3E-08 43.5 3.0 23 16-38 22-44 (247)
463 2r62_A Cell division protease 96.3 0.0011 3.7E-08 46.1 1.1 23 17-39 44-66 (268)
464 2px0_A Flagellar biosynthesis 96.3 0.0031 1.1E-07 44.8 3.5 125 16-147 104-269 (296)
465 3uk6_A RUVB-like 2; hexameric 96.3 0.0026 8.8E-08 46.1 3.1 23 17-39 70-92 (368)
466 3crm_A TRNA delta(2)-isopenten 96.2 0.0033 1.1E-07 45.2 3.4 22 18-39 6-27 (323)
467 3bk7_A ABC transporter ATP-bin 96.2 0.0028 9.5E-08 49.5 3.2 25 16-40 116-140 (607)
468 1um8_A ATP-dependent CLP prote 96.2 0.003 1E-07 46.1 3.2 24 16-39 71-94 (376)
469 3zvl_A Bifunctional polynucleo 96.2 0.0038 1.3E-07 46.4 3.8 25 15-39 256-280 (416)
470 2qby_B CDC6 homolog 3, cell di 96.2 0.0036 1.2E-07 45.5 3.6 23 17-39 45-67 (384)
471 2v1u_A Cell division control p 96.2 0.0024 8.2E-08 46.3 2.6 25 15-39 42-66 (387)
472 3tqf_A HPR(Ser) kinase; transf 96.2 0.0032 1.1E-07 41.3 2.9 26 15-40 14-39 (181)
473 4a82_A Cystic fibrosis transme 96.2 0.0022 7.6E-08 49.7 2.5 26 15-40 365-390 (578)
474 2qen_A Walker-type ATPase; unk 96.2 0.0029 9.8E-08 45.3 2.9 23 18-40 32-54 (350)
475 3qf4_A ABC transporter, ATP-bi 96.2 0.0024 8.3E-08 49.6 2.7 26 15-40 367-392 (587)
476 3ozx_A RNAse L inhibitor; ATP 96.2 0.0028 9.6E-08 48.8 3.0 24 17-40 294-317 (538)
477 4b4t_I 26S protease regulatory 96.2 0.0049 1.7E-07 46.1 4.1 28 13-40 212-239 (437)
478 2yl4_A ATP-binding cassette SU 96.2 0.0024 8.3E-08 49.7 2.5 26 15-40 368-393 (595)
479 3ake_A Cytidylate kinase; CMP 96.1 0.0036 1.2E-07 41.5 3.1 21 19-39 4-24 (208)
480 2ce7_A Cell division protein F 96.1 0.0054 1.8E-07 46.5 4.3 23 17-39 49-71 (476)
481 2fna_A Conserved hypothetical 96.1 0.003 1E-07 45.3 2.8 22 18-39 31-52 (357)
482 2ga8_A Hypothetical 39.9 kDa p 96.1 0.0065 2.2E-07 44.3 4.5 24 16-39 23-46 (359)
483 1yqt_A RNAse L inhibitor; ATP- 96.1 0.0035 1.2E-07 48.3 3.3 25 16-40 311-335 (538)
484 3pfi_A Holliday junction ATP-d 96.1 0.0035 1.2E-07 45.0 3.1 25 16-40 54-78 (338)
485 3d8b_A Fidgetin-like protein 1 96.1 0.004 1.4E-07 45.3 3.4 25 15-39 115-139 (357)
486 3qks_A DNA double-strand break 96.1 0.0035 1.2E-07 42.0 2.9 20 19-38 25-44 (203)
487 1pzn_A RAD51, DNA repair and r 96.1 0.0031 1.1E-07 45.8 2.8 26 15-40 129-154 (349)
488 3qf4_B Uncharacterized ABC tra 96.1 0.0028 9.4E-08 49.4 2.7 26 15-40 379-404 (598)
489 3d3q_A TRNA delta(2)-isopenten 96.1 0.0033 1.1E-07 45.6 2.9 22 18-39 8-29 (340)
490 2bjv_A PSP operon transcriptio 96.1 0.0034 1.2E-07 43.5 2.9 26 15-40 27-52 (265)
491 2z4s_A Chromosomal replication 96.1 0.0031 1E-07 47.3 2.8 23 17-39 130-152 (440)
492 3hws_A ATP-dependent CLP prote 96.1 0.0036 1.2E-07 45.5 3.2 24 16-39 50-73 (363)
493 3bk7_A ABC transporter ATP-bin 96.1 0.0033 1.1E-07 49.1 3.0 24 17-40 382-405 (607)
494 1r6b_X CLPA protein; AAA+, N-t 96.1 0.0058 2E-07 48.8 4.5 33 7-39 197-229 (758)
495 1c9k_A COBU, adenosylcobinamid 96.1 0.004 1.4E-07 41.0 3.0 21 20-40 2-22 (180)
496 4b4t_H 26S protease regulatory 96.1 0.0046 1.6E-07 46.6 3.6 27 13-39 239-265 (467)
497 3pxi_A Negative regulator of g 96.1 0.0051 1.7E-07 49.2 4.0 28 12-39 196-223 (758)
498 1vma_A Cell division protein F 96.1 0.005 1.7E-07 44.0 3.6 24 16-39 103-126 (306)
499 2ocp_A DGK, deoxyguanosine kin 96.1 0.0045 1.5E-07 42.4 3.3 23 17-39 2-24 (241)
500 2qp9_X Vacuolar protein sortin 96.0 0.0036 1.2E-07 45.6 2.9 24 17-40 84-107 (355)
No 1
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=3.3e-30 Score=173.11 Aligned_cols=145 Identities=49% Similarity=0.861 Sum_probs=122.4
Q ss_pred CcchHHHHHhhcccccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHh
Q 031797 1 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (153)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~ 80 (153)
||+.++++++ ....+.++|+++|++|+|||||++++.++.+....+|.+.....+...+..+.+||+||++.+...+..
T Consensus 1 m~~~~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 79 (187)
T 1zj6_A 1 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNT 79 (187)
T ss_dssp -CHHHHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHH
T ss_pred CchHHHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 8888988888 777889999999999999999999999888776677877777778888999999999999999999999
Q ss_pred hhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCCC
Q 031797 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 146 (153)
Q Consensus 81 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~~ 146 (153)
+++++|++++|+|+++++++.....++..+.......+.|+++|+||+|+.+....+++.+.++..
T Consensus 80 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~ 145 (187)
T 1zj6_A 80 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLT 145 (187)
T ss_dssp HHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGG
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChh
Confidence 999999999999999999999999988888765434679999999999998877777777766543
No 2
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=3.7e-30 Score=171.94 Aligned_cols=149 Identities=60% Similarity=1.033 Sum_probs=126.5
Q ss_pred CcchHHHHHhhccc-ccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchH
Q 031797 1 MGLSFTKLFSKLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 79 (153)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~ 79 (153)
||+.+++.++.... .+.++|+++|++|+|||||++++.++.+....+|.+.....+...+..+.+||+||++.+...+.
T Consensus 1 mg~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 80 (183)
T 1moz_A 1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWR 80 (183)
T ss_dssp -CHHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGG
T ss_pred CchHHHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence 88899999988887 88999999999999999999999988876667788877777888889999999999999998899
Q ss_pred hhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCCCccc
Q 031797 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR 149 (153)
Q Consensus 80 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~~~~~ 149 (153)
.+++.+|++++|+|++++.++.....++..+.......+.|+++|+||+|+.+.....++.+.++...+.
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~ 150 (183)
T 1moz_A 81 CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELK 150 (183)
T ss_dssp GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCC
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCccccc
Confidence 9999999999999999999999999888888765545789999999999998877778888877765443
No 3
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.97 E-value=2.6e-30 Score=173.78 Aligned_cols=149 Identities=56% Similarity=0.991 Sum_probs=125.9
Q ss_pred CcchHHHHHh--hccc-ccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhc
Q 031797 1 MGLSFTKLFS--KLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (153)
Q Consensus 1 ~~~~~~~~~~--~~~~-~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 77 (153)
||..++++++ +... .+.++|+++|++|+|||||++++.++.+....+|.+.....+...+..+.+||+||++.+...
T Consensus 3 m~~~~~~~~~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~ 82 (189)
T 2x77_A 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPY 82 (189)
T ss_dssp ---CCSCHHHHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCC
T ss_pred hHHHHHHHHHHhhhccCCCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHH
Confidence 6666665555 5555 788999999999999999999999888877778888777788888999999999999999988
Q ss_pred hHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCCCccc
Q 031797 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR 149 (153)
Q Consensus 78 ~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~~~~~ 149 (153)
+..+++.+|++++|+|+++++++.....++..++......+.|+++|+||+|+.+.....++.+.++...+.
T Consensus 83 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 154 (189)
T 2x77_A 83 WRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIM 154 (189)
T ss_dssp CSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCC
T ss_pred HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhcc
Confidence 888999999999999999999999999988888776555789999999999998887777888877655443
No 4
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=3.6e-29 Score=167.69 Aligned_cols=145 Identities=48% Similarity=0.860 Sum_probs=116.5
Q ss_pred CcchHHHHHhhccc-ccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchH
Q 031797 1 MGLSFTKLFSKLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 79 (153)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~ 79 (153)
|| .++ .+.+... .+.++|+++|++|+|||||++++.+.......+|.+.....+...+..+.+||+||++.+...+.
T Consensus 3 mg-~~~-~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~ 80 (186)
T 1ksh_A 3 MG-LLT-ILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWR 80 (186)
T ss_dssp ----------------CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGG
T ss_pred cc-hhH-HHHhhcccCCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence 45 343 3444444 67899999999999999999999988855667788887778888899999999999999999999
Q ss_pred hhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCCCc
Q 031797 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS 147 (153)
Q Consensus 80 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~~~ 147 (153)
.+++++|++++|+|++++.++.....++..++......+.|+++|+||+|+.+....+++.+.+++..
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 148 (186)
T 1ksh_A 81 NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDS 148 (186)
T ss_dssp GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGG
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhh
Confidence 99999999999999999999999988888887765456899999999999988877777877776543
No 5
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=1.3e-29 Score=171.15 Aligned_cols=143 Identities=86% Similarity=1.313 Sum_probs=120.1
Q ss_pred HHHhhcccccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCC
Q 031797 7 KLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (153)
Q Consensus 7 ~~~~~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 86 (153)
.++++....+.++|+++|++|+|||||++++.++.+....+|.+.....+...+..+.+||+||++.+...+..+++.+|
T Consensus 19 ~~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 98 (192)
T 2b6h_A 19 SLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQ 98 (192)
T ss_dssp CGGGGTTTTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCC
T ss_pred HHHHHhccCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCC
Confidence 44667777889999999999999999999999888877777888777778888999999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCCCccc
Q 031797 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR 149 (153)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~~~~~ 149 (153)
++++|+|+++++++.....++..++......+.|+++|+||+|+.+.....++.+.++.....
T Consensus 99 ~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~ 161 (192)
T 2b6h_A 99 GLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLR 161 (192)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCS
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCccccc
Confidence 999999999999999999888888776545689999999999998887778888887765443
No 6
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.96 E-value=2.7e-28 Score=161.07 Aligned_cols=134 Identities=62% Similarity=1.060 Sum_probs=118.6
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEEC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~ 94 (153)
.+.++|+++|++|+|||||++++.+..+....+|.+.....+......+.+||+||++.+...+..+++.+|++++|+|+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 84 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDS 84 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEET
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEEC
Confidence 56799999999999999999999998887778888888888888899999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCCCcc
Q 031797 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 148 (153)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~~~~ 148 (153)
+++.++.....++..++......+.|+++|+||+|+.+.....++.+.++...+
T Consensus 85 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~ 138 (171)
T 1upt_A 85 CDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPAL 138 (171)
T ss_dssp TCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGC
T ss_pred CCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhc
Confidence 999999999988888877654468999999999999888777777777765443
No 7
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.96 E-value=9.8e-29 Score=162.24 Aligned_cols=132 Identities=96% Similarity=1.392 Sum_probs=116.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCc
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~ 97 (153)
+||+++|++|+|||||++++.++.+....||.+.....+...+..+.+||+||++.+...+..+++++|++++|+|++++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 80 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999988887777888877777888889999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCCCccc
Q 031797 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR 149 (153)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~~~~~ 149 (153)
+++.....++..+......++.|+++|+||+|+.+.....++.+.++...+.
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 132 (164)
T 1r8s_A 81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR 132 (164)
T ss_dssp GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCS
T ss_pred HHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCccccc
Confidence 9999998888888776555689999999999998877777888877765443
No 8
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.96 E-value=7.8e-29 Score=165.85 Aligned_cols=134 Identities=49% Similarity=0.843 Sum_probs=116.7
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEEC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~ 94 (153)
.+.++|+++|++|+|||||++++.+..+....+|.+.....+...+..+.+||+||++.+...+..+++.+|++++|+|+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~ 93 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDS 93 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEET
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEEC
Confidence 57899999999999999999999988776667777877777788899999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCCCcc
Q 031797 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 148 (153)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~~~~ 148 (153)
+++.++.....++..++......+.|+++|+||+|+.+....+++++.+++...
T Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~ 147 (181)
T 1fzq_A 94 ADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTI 147 (181)
T ss_dssp TCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGC
T ss_pred cCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhc
Confidence 999999998888888766544468999999999999888777788877765443
No 9
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.96 E-value=4.3e-29 Score=171.59 Aligned_cols=134 Identities=17% Similarity=0.398 Sum_probs=105.5
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEEE--EEE--cCEEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
.+.+||+++|.+|||||||+++|.++.+.. +.+|.+..+.. +.. ...++.+||++|+++|...+..+++++++++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i 90 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV 90 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence 567999999999999999999999998874 46777765433 333 3478999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc-----CCHHHHHHHhCCCccc
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLR 149 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~-----~~~~~~~~~~~~~~~~ 149 (153)
+|||+++++||..+..|+..+.... .+++|+++||||+|+.+. ++..++++++++++++
T Consensus 91 lv~di~~~~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e 154 (216)
T 4dkx_A 91 VVYDITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIE 154 (216)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred EEeecchhHHHHHHHHHHHHHHHhc-CCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEE
Confidence 9999999999999999888775432 368999999999999764 2467888999887653
No 10
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.96 E-value=1.4e-27 Score=160.99 Aligned_cols=134 Identities=41% Similarity=0.670 Sum_probs=114.7
Q ss_pred ccccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEE
Q 031797 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 92 (153)
...+.++|+++|++|+|||||++++.+..+....+|.+.....+...+..+.+||+||++.++..+..+++.+|++++|+
T Consensus 19 ~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 98 (190)
T 1m2o_B 19 LWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLV 98 (190)
T ss_dssp -----CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEE
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEE
Confidence 34667899999999999999999999988877778888888888888999999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCCC
Q 031797 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 146 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~~ 146 (153)
|++++.++.....++..++......+.|+++|+||+|+.+....+++++.++..
T Consensus 99 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~ 152 (190)
T 1m2o_B 99 DAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLL 152 (190)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCS
T ss_pred ECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCc
Confidence 999999999999888888765444689999999999998877777777776654
No 11
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.96 E-value=6.3e-28 Score=161.22 Aligned_cols=137 Identities=48% Similarity=0.812 Sum_probs=115.6
Q ss_pred cccccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEE
Q 031797 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 12 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 91 (153)
....+.++|+++|++|+|||||++++.+..+....+|.+.....+...+..+.+||+||++.+...+..+++.+|++++|
T Consensus 16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 95 (181)
T 2h17_A 16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVV 95 (181)
T ss_dssp -----CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEE
T ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 34466799999999999999999999998886667777777777888899999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCCCcc
Q 031797 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 148 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~~~~ 148 (153)
+|+++..++.....++..++......+.|+++|+||+|+.+....+++.+.+++..+
T Consensus 96 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~ 152 (181)
T 2h17_A 96 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSI 152 (181)
T ss_dssp EETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGC
T ss_pred EECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccc
Confidence 999999999999999888876544468999999999999887777777777665443
No 12
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.96 E-value=1.1e-27 Score=162.47 Aligned_cols=133 Identities=31% Similarity=0.660 Sum_probs=107.3
Q ss_pred ccccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEE
Q 031797 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (153)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 92 (153)
...+.++|+++|++|+|||||++++.++.+....+|.+.....+...+..+.+||+||++.++..+..+++.+|++++|+
T Consensus 21 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 100 (198)
T 1f6b_A 21 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLV 100 (198)
T ss_dssp CTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEE
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEE
Confidence 44677899999999999999999999988776677777777778888899999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCC
Q 031797 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL 145 (153)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~ 145 (153)
|+++++++.....++..++......+.|+++|+||+|+.+....+++.+.++.
T Consensus 101 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~ 153 (198)
T 1f6b_A 101 DCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGL 153 (198)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTC
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCc
Confidence 99999999999998888876544468999999999999876667777776654
No 13
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.96 E-value=2.2e-27 Score=159.55 Aligned_cols=135 Identities=33% Similarity=0.744 Sum_probs=117.0
Q ss_pred ccccccEEEEEcCCCCcHHHHHHHHhcCCcc-ccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEE
Q 031797 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 91 (153)
...+.++|+++|++|+|||||++++.+..+. ...+|.+.....+...+..+.+||+||++.+...+..+++.+|++++|
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 97 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM 97 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEE
Confidence 3356799999999999999999999988876 457788888888888899999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCCCc
Q 031797 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS 147 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~~~ 147 (153)
+|+++.+++.....++..++......+.|+++|+||+|+.+.....++.+.++...
T Consensus 98 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~ 153 (188)
T 1zd9_A 98 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSA 153 (188)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGG
T ss_pred EECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhh
Confidence 99999999999999988887754446899999999999988777777777776543
No 14
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.95 E-value=8.8e-28 Score=162.31 Aligned_cols=137 Identities=39% Similarity=0.668 Sum_probs=113.4
Q ss_pred hcccccccEEEEEcCCCCcHHHHHHHHhcCCcccc--CCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEE
Q 031797 11 KLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (153)
Q Consensus 11 ~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 88 (153)
........+|+++|++|+|||||+++|.+..+... .+|.+.....+......+.+||+||++.+...+..+++.+|++
T Consensus 11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 90 (199)
T 4bas_A 11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAV 90 (199)
T ss_dssp -----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEE
Confidence 45567789999999999999999999999887653 7788888888888999999999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCC-------CCceEEEEEeCCCccccCCHHHHHHHhCCCc
Q 031797 89 IFVVDSNDRDRVVEARDELHRMLNEDEL-------RDAVLLVFANKQDLPNAMNAAEITDKLGLHS 147 (153)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-------~~~~iivv~~K~Dl~~~~~~~~~~~~~~~~~ 147 (153)
++|+|+++..++.....++..++..... .+.|+++|+||+|+.+.....++.+.+++..
T Consensus 91 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~ 156 (199)
T 4bas_A 91 IFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTT 156 (199)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHH
T ss_pred EEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchh
Confidence 9999999999999999888888664211 3789999999999998887778877776543
No 15
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.95 E-value=5.8e-27 Score=157.59 Aligned_cols=134 Identities=43% Similarity=0.758 Sum_probs=112.2
Q ss_pred ccccccEEEEEcCCCCcHHHHHHHHhcCC-cc-ccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEE
Q 031797 13 FAKKEMRILMVGLDAAGKTTILYKLKLGE-IV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~-~~-~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 90 (153)
...+.++|+++|++|+|||||++++.+.. +. ...+|.+.....+...+..+.+||+||++.+...+..+++.+|++++
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIF 96 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 34567999999999999999999999877 23 45677787777788888999999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCC--CCceEEEEEeCCCccccCCHHHHHHHhCCC
Q 031797 91 VVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLGLH 146 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~iivv~~K~Dl~~~~~~~~~~~~~~~~ 146 (153)
|+|+++..++.....++..++..... .+.|+++|+||+|+.+....+++.+.+.+.
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 154 (190)
T 2h57_A 97 VIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLE 154 (190)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGG
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChh
Confidence 99999999999988888888776443 579999999999998877777777666533
No 16
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.95 E-value=5.7e-27 Score=170.16 Aligned_cols=136 Identities=96% Similarity=1.377 Sum_probs=117.8
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEE
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 93 (153)
..+.++|+++|++|+|||||+++|.+..+....+|.+.....+...+..+.+||+||++.+...+..+++.+|++++|+|
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D 241 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 241 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEE
T ss_pred ccCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 34668999999999999999999999888777788888888889999999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCCCccc
Q 031797 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR 149 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~~~~~ 149 (153)
++++.++.....++..++.....+++|+++|+||+|+.+.....++.+.++.....
T Consensus 242 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~ 297 (329)
T 3o47_A 242 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR 297 (329)
T ss_dssp TTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCC
T ss_pred CCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhh
Confidence 99999999999999998887666789999999999999988888899988876643
No 17
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.94 E-value=1.7e-25 Score=170.29 Aligned_cols=136 Identities=74% Similarity=1.229 Sum_probs=123.2
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEEC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~ 94 (153)
.+.++|+++|.+|+|||||++++.+.++....+|.+.....+...+..+.+||+||++.+...+..+++.+|++++|||+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~ 399 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDC 399 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEET
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEEC
Confidence 45699999999999999999999999888888899999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHHhCCCcccC
Q 031797 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ 150 (153)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~~~~~~~ 150 (153)
++..++.....++..++......++|+++|+||+|+.+.....++.+.++......
T Consensus 400 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 455 (497)
T 3lvq_E 400 ADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRD 455 (497)
T ss_dssp TCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCS
T ss_pred cchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhc
Confidence 99999999999999988765556899999999999998888888888888765443
No 18
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.94 E-value=2.3e-25 Score=151.09 Aligned_cols=140 Identities=16% Similarity=0.260 Sum_probs=104.3
Q ss_pred HhhcccccccEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeEEE---EEEEcCEEEEEEEcCCCCCchhchHhhhcC
Q 031797 9 FSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQN 84 (153)
Q Consensus 9 ~~~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~~~---~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~ 84 (153)
.+.....+.++|+++|++|+|||||++++.+..+... .+|.+.... ........+.+||+||++.+...+..+++.
T Consensus 16 ~q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 95 (201)
T 3oes_A 16 FQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIG 95 (201)
T ss_dssp -------CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTT
T ss_pred CCCCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhc
Confidence 3445556789999999999999999999999887643 455554432 223356889999999999999999999999
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 85 ~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|++++|+|++++.++.....|+..+.......++|+++|+||+|+.+.. ...++++..+++++
T Consensus 96 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 164 (201)
T 3oes_A 96 VHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFM 164 (201)
T ss_dssp CCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEE
Confidence 99999999999999999998888887766555689999999999997543 35567777777654
No 19
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.93 E-value=2.6e-25 Score=146.09 Aligned_cols=132 Identities=17% Similarity=0.205 Sum_probs=84.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEE-EEEE--cCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEE
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 93 (153)
.+||+++|++|+|||||++++.+.......++.+.... .+.. ....+.+||+||++.+...+..+++.+|++++|+|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS 81 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEE
Confidence 58999999999999999999988765544444443332 2233 44689999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
++++.++.....|+..+......++.|+++|+||+|+.+.. ....+++..+++.+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 141 (166)
T 3q72_A 82 VTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFI 141 (166)
T ss_dssp TTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEE
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEE
Confidence 99999999999998888776555789999999999997543 24556666666544
No 20
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.93 E-value=4.5e-25 Score=147.04 Aligned_cols=134 Identities=18% Similarity=0.256 Sum_probs=105.6
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEE-EEEEEcC--EEEEEEEcCCCCCchhchHhhhcCCCEEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 90 (153)
.+.++|+++|++|+|||||++++.++.+.. ..+|.+... ..+...+ ..+.+||+||++.+...+..+++.+|++++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 83 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 83 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEE
Confidence 467999999999999999999999877654 355555443 3334444 678999999999999888999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc-----CCHHHHHHHhCCCcc
Q 031797 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSL 148 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~-----~~~~~~~~~~~~~~~ 148 (153)
|+|+++++++.....|+..+.......+.|+++|+||+|+.+. .+..++++.++++++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 146 (181)
T 3t5g_A 84 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFL 146 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEE
Confidence 9999999999998888877766555568999999999999643 235667777777654
No 21
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.93 E-value=3.4e-25 Score=148.72 Aligned_cols=136 Identities=22% Similarity=0.454 Sum_probs=107.9
Q ss_pred ccccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEE---EEEEc-----------CEEEEEEEcCCCCCchhc
Q 031797 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE---TVEYK-----------NISFTVWDVGGQDKIRPL 77 (153)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~---~~~~~-----------~~~~~i~d~~g~~~~~~~ 77 (153)
.....++|+++|++|+|||||++++.+..+.. ..+|.+..+. .+... ...+.+||+||++.+...
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 34567999999999999999999999887653 3566665544 33333 468999999999999999
Q ss_pred hHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 78 ~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+..+++.+|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+.. ...++++..+++.+
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYF 162 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEE
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEE
Confidence 999999999999999999999998888777766554443679999999999997632 35566667776654
No 22
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.93 E-value=5.1e-25 Score=147.68 Aligned_cols=133 Identities=14% Similarity=0.246 Sum_probs=101.8
Q ss_pred hcccccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEEEEEEcC--EEEEEEEcCCCCCchhchHhhhcCCCE
Q 031797 11 KLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (153)
Q Consensus 11 ~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (153)
.....+.+||+++|++|+|||||++++.++.+.. ..+|.+.....+...+ ..+.+||++|++.+. +++.+|+
T Consensus 14 ~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~ 88 (184)
T 3ihw_A 14 LYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDA 88 (184)
T ss_dssp --CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSE
T ss_pred CCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCE
Confidence 4456778999999999999999999999988764 3455443334455555 678889999998876 6788999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc--c-----CCHHHHHHHhC-CCcc
Q 031797 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN--A-----MNAAEITDKLG-LHSL 148 (153)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~--~-----~~~~~~~~~~~-~~~~ 148 (153)
+++|||++++.++.....|+..+.......+.|+++|+||+|+.+ . .+..+++++++ ++++
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~ 157 (184)
T 3ihw_A 89 VVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYY 157 (184)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEE
Confidence 999999999999999888777776554446799999999999942 1 23566777775 4443
No 23
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.93 E-value=1.5e-25 Score=153.57 Aligned_cols=136 Identities=19% Similarity=0.275 Sum_probs=103.0
Q ss_pred cccccccEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeEEEE---EEEcCEEEEEEEcCCCCCchhchHhhhcCCCE
Q 031797 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET---VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (153)
Q Consensus 12 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~~~~---~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (153)
......+||+++|++|+|||||+++|.+..+... .+|.+..+.. +......+.+||++|++.+...+..+++.+|+
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 101 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 101 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence 3446679999999999999999999999887644 5666655432 23345789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc-----------------CCHHHHHHHhCC-Ccc
Q 031797 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----------------MNAAEITDKLGL-HSL 148 (153)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~-----------------~~~~~~~~~~~~-~~~ 148 (153)
+++|||++++.++......|...+.... ++.|+++|+||+|+.+. .+..++++++++ +++
T Consensus 102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 179 (214)
T 3q3j_B 102 VLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYL 179 (214)
T ss_dssp EEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEE
Confidence 9999999999999885444444443322 58999999999999752 235677778887 444
No 24
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.93 E-value=6e-25 Score=146.64 Aligned_cols=136 Identities=19% Similarity=0.283 Sum_probs=107.6
Q ss_pred ccccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEE-EEEEEcC--EEEEEEEcCCCCCchhchHhhhcCCCEE
Q 031797 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (153)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~i 88 (153)
...+.+||+++|++|+|||||++++.+..+.. ..++.+... ..+...+ ..+.+||+||++.+...+..+++.+|++
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 93 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGF 93 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 34567999999999999999999999887663 345555443 2333444 5677899999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc-----CCHHHHHHHhCCCcc
Q 031797 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSL 148 (153)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~-----~~~~~~~~~~~~~~~ 148 (153)
++|+|++++.++.....|+..+.......+.|+++|+||+|+.+. ....+++++++++++
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 158 (183)
T 3kkq_A 94 LIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYI 158 (183)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEE
Confidence 999999999999888888777765444468999999999999753 235677777877655
No 25
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.93 E-value=1.8e-24 Score=141.75 Aligned_cols=133 Identities=17% Similarity=0.351 Sum_probs=105.0
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeE-EEEEEEcC--EEEEEEEcCCCCCchhchHhhhcCCCEEEEE
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN-VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~-~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 91 (153)
+.++|+++|++|+|||||++++.++.+... .++.+.. ...+...+ ..+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 468999999999999999999998876543 3444332 23344444 5699999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|++++.++.....++..+.......+.|+++|+||+|+.+.. ...+++++.+++.+
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 143 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFM 143 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEE
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEE
Confidence 9999999998888888777665444689999999999987542 24566667776654
No 26
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.93 E-value=8.1e-25 Score=143.93 Aligned_cols=133 Identities=23% Similarity=0.432 Sum_probs=103.6
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEE--EEEEE--cCEEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
.+.++|+++|++|+|||||++++.++.+.. ..++.+... ..+.. ....+.+||+||++.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 567999999999999999999999887654 345555443 23333 3578999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|+|++++.++.....|+..+.... .++.|+++|+||+|+.++. +..+++++.+++.+
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 146 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFM 146 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEE
Confidence 9999999999988887776665432 3689999999999997542 34455555665544
No 27
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.93 E-value=9.8e-25 Score=143.55 Aligned_cols=132 Identities=22% Similarity=0.480 Sum_probs=103.4
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEE--EEEEEc--CEEEEEEEcCCCCCchhchHhhhcCCCEEEE
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 90 (153)
+.++|+++|++|+|||||++++.+..+.. ..++.+... ..+... ...+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 46899999999999999999999888653 455555443 334443 4589999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc---C-----CHHHHHHHhCCCcc
Q 031797 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA---M-----NAAEITDKLGLHSL 148 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~---~-----~~~~~~~~~~~~~~ 148 (153)
|+|++++.++.....|+..+.... .++.|+++|+||+|+.+. . ...++++..+++.+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~ 146 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFF 146 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEE
T ss_pred EEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEE
Confidence 999999999988887776665432 367999999999999754 1 24455666666543
No 28
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.93 E-value=1.1e-24 Score=144.05 Aligned_cols=134 Identities=14% Similarity=0.141 Sum_probs=92.9
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeE--EEEEEEcC--EEEEEEEcCCCCC--chhchHhhhcCCCEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKN--ISFTVWDVGGQDK--IRPLWRHYFQNTQGL 88 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~d~~g~~~--~~~~~~~~~~~~~~i 88 (153)
.+.++|+++|++|+|||||++++.+..+....++.+.. ...+...+ ..+.+||+||++. +......+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 45789999999999999999999988776444444433 23344444 5789999999987 566667788999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
++|+|++++.++.....|+..+.......+.|+++|+||+|+.+.. +...+++..+++.+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 146 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFI 146 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEE
Confidence 9999999999999888877776654444679999999999997642 23455556665544
No 29
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.93 E-value=6.5e-25 Score=145.86 Aligned_cols=136 Identities=18% Similarity=0.310 Sum_probs=106.9
Q ss_pred ccccccEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeEEE-EEEEcC--EEEEEEEcCCCCCchhchHhhhcCCCEE
Q 031797 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE-TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (153)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~i 88 (153)
+..+.++|+++|++|+|||||++++.+..+... .+|.+.... .+...+ ..+.+||+||++.+...+..+++.+|++
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 456789999999999999999999999876643 555555433 344444 6889999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
++|+|+++..++.....|+..++......+.|+++|+||+|+.+.. ....+++..+++.+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 149 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYF 149 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEE
Confidence 9999999999999888888777554444679999999999997642 24455555555443
No 30
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.93 E-value=1.2e-24 Score=146.16 Aligned_cols=136 Identities=24% Similarity=0.425 Sum_probs=105.9
Q ss_pred ccccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeE--EEEEEEcC--EEEEEEEcCCCCCch-hchHhhhcCCC
Q 031797 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIR-PLWRHYFQNTQ 86 (153)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~d~~g~~~~~-~~~~~~~~~~~ 86 (153)
...+.++|+++|++|+|||||++++.+..+.. ..++.+.. ...+...+ ..+.+||+||++.+. ..+..+++.+|
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 34567999999999999999999999887764 34555543 33444444 689999999999887 78888999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
++++|+|+++..++.....|+..+.......+.|+++|+||+|+.+.. ...++++..+++.+
T Consensus 96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 162 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLF 162 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEE
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEE
Confidence 999999999999998888877776655444689999999999997542 34566666776554
No 31
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.93 E-value=2.9e-24 Score=143.69 Aligned_cols=134 Identities=20% Similarity=0.375 Sum_probs=103.6
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeE-EEEEEEcC--EEEEEEEcCCCCCchhchHhhhcCCCEEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN-VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~-~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 90 (153)
.+.++|+++|++|+|||||++++.+..+... .++.... ...+...+ ..+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 4578999999999999999999998876543 3444332 23344444 458889999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC----CHHHHHHHhCCCcc
Q 031797 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSL 148 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~----~~~~~~~~~~~~~~ 148 (153)
|+|++++.++.....++..+.......+.|+++|+||+|+.+.. ...++++..+++.+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 143 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFI 143 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEE
Confidence 99999999999888888777665445689999999999997543 35667777776654
No 32
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.93 E-value=2.2e-24 Score=145.26 Aligned_cols=133 Identities=26% Similarity=0.499 Sum_probs=105.9
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeE--EEEEEEcC--EEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
...++|+++|++|+|||||++++.+..+.. ..++.+.. ...+...+ ..+.+||+||++.+...+..+++.+|+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 456999999999999999999999987653 34554443 34455555 68999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|+|++++.++.....|+..+... ...+.|+++|+||+|+.+.. ...++++.++++.+
T Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 156 (196)
T 3tkl_A 94 VVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFL 156 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEE
Confidence 999999999998887766655432 23579999999999997543 35667777777655
No 33
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.93 E-value=1.6e-24 Score=142.30 Aligned_cols=128 Identities=20% Similarity=0.369 Sum_probs=100.4
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEEE-EEE--cCEEEEEEEcCCCCCchhchHhhhcCCCEEEEE
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~-~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 91 (153)
+.++|+++|++|+|||||++++.+..+.. ..+|.+..... +.. ....+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999887654 34555544332 222 346899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHh
Q 031797 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKL 143 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~ 143 (153)
+|++++.++.....++..+.......+.|+++|+||+|+.+.. ...++++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~ 138 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQW 138 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHc
Confidence 9999999998888877666553333679999999999997643 244555555
No 34
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.92 E-value=8.9e-25 Score=148.37 Aligned_cols=131 Identities=22% Similarity=0.455 Sum_probs=100.0
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeE--EEEEEEcC--EEEEEEEcCCCCCchhchHhhhcCCCEE
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~i 88 (153)
....++|+++|++|+|||||++++.+..+.. ..+|.+.. ...+...+ ..+.+||+||++.+...+..+++.+|++
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA 105 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence 3556999999999999999999999888753 35565543 34455554 6999999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc-----CCHHHHHHHhCC
Q 031797 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGL 145 (153)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~-----~~~~~~~~~~~~ 145 (153)
++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+. .+..++++.+++
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~ 166 (201)
T 2hup_A 106 ILAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDI 166 (201)
T ss_dssp EEEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHHHcCC
Confidence 99999999999988887766654432 367999999999999763 235566777776
No 35
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.92 E-value=8.8e-25 Score=147.32 Aligned_cols=132 Identities=25% Similarity=0.416 Sum_probs=104.1
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEEE-EEEc--CEEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET-VEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~-~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
..+.++|+++|++|+|||||++++.+..+.. ..+|.+..+.. +... ...+.+||+||++.+...+..+++++|+++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 99 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL 99 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence 3556999999999999999999999988764 35566555433 3333 356799999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc-------CCHHHHHHHhCCC
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-------MNAAEITDKLGLH 146 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~-------~~~~~~~~~~~~~ 146 (153)
+|+|++++.++......|...+... .++.|+++|+||+|+.+. ....++++.++++
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (194)
T 3reg_A 100 LCFAVNNRTSFDNISTKWEPEIKHY-IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCV 162 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH-CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCC
Confidence 9999999999988766565555432 257999999999999642 2456677777776
No 36
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.92 E-value=4.5e-24 Score=141.77 Aligned_cols=132 Identities=25% Similarity=0.536 Sum_probs=104.4
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcc-ccCCceeeE--EEEEEEcC--EEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
...++|+++|++|+|||||++++.+..+. ...++.+.. ...+...+ ..+.+||+||++.+...+..+++.+|+++
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 86 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI 86 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence 56799999999999999999999988765 334555543 34455555 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|+|++++.++.....|+..+.... ++.|+++|+||+|+.+.. ....+++..+++.+
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 148 (181)
T 3tw8_B 87 VVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLF 148 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEE
Confidence 9999999999988887776664432 579999999999987643 35566666776654
No 37
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=8.5e-25 Score=147.68 Aligned_cols=141 Identities=16% Similarity=0.265 Sum_probs=103.1
Q ss_pred HHHhhcccccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEE-EEEEc--CEEEEEEEcCCCCCchhchHhhh
Q 031797 7 KLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYF 82 (153)
Q Consensus 7 ~~~~~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~i~d~~g~~~~~~~~~~~~ 82 (153)
.++++....+.++|+++|++|+|||||++++.+..+.. ..+|.+..+. .+... ...+.+||+||++. ...+..++
T Consensus 18 ~~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~ 96 (196)
T 2atv_A 18 LYFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHM 96 (196)
T ss_dssp ---------CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHH
T ss_pred cchhccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhh
Confidence 34556666778999999999999999999999987763 3555554442 23343 46799999999988 77788889
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 83 ~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+.+|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+.. +..+++++++++.+
T Consensus 97 ~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 167 (196)
T 2atv_A 97 RWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFY 167 (196)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEE
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEE
Confidence 9999999999999999998888777666543333679999999999997632 35566667776554
No 38
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=1.7e-24 Score=145.84 Aligned_cols=136 Identities=22% Similarity=0.395 Sum_probs=104.4
Q ss_pred cccccccEEEEEcCCCCcHHHHHHHHhcCCcc-ccCCceeeEEEE--EEE--cCEEEEEEEcCCCCCchhchHhhhcCCC
Q 031797 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (153)
Q Consensus 12 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 86 (153)
....+.++|+++|++|+|||||++++.+..+. ...++.+..... +.. ....+.+||+||++.+...+..+++.+|
T Consensus 18 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 97 (192)
T 2fg5_A 18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSA 97 (192)
T ss_dssp ---CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCS
T ss_pred cccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCC
Confidence 33466799999999999999999999998865 345666654433 222 4578999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
++++|+|++++.++.....|+..+... ..++.|+++|+||+|+.+.. +..+++++++.+.+
T Consensus 98 ~iilV~d~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 163 (192)
T 2fg5_A 98 AAVIVYDITKQDSFYTLKKWVKELKEH-GPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVV 163 (192)
T ss_dssp EEEEEEETTCTHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEE
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEE
Confidence 999999999999998887776665432 23579999999999997532 34556666665543
No 39
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.92 E-value=4.4e-24 Score=142.02 Aligned_cols=135 Identities=21% Similarity=0.397 Sum_probs=104.1
Q ss_pred ccccccEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeEE--EEEEEc--CEEEEEEEcCCCCCchhchHhhhcCCCE
Q 031797 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (153)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~~--~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (153)
.....++|+++|++|+|||||++++.+..+... .++.+... ..+... ...+.+||+||++.+...+..+++.+|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 346679999999999999999999998877643 44544333 334443 4689999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+++|+|++++.++.....|+..+... ..++.|+++|+||+|+.+.. ...++++..+++.+
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 152 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQ-GNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFM 152 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEE
Confidence 99999999999998888777666543 23689999999999996532 34556666666544
No 40
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.92 E-value=2.3e-24 Score=144.70 Aligned_cols=133 Identities=22% Similarity=0.488 Sum_probs=104.3
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEE--EEEE--cCEEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
...++|+++|++|+|||||++++.+..+.. ..++.+.... .+.. ....+.+||+||++.+...+..+++.+|+++
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 99 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL 99 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence 446899999999999999999999988753 3555554432 3333 3468999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|+|+++..++.....|+..+... ...+.|+++|+||+|+.+.. ...+++++++++.+
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (189)
T 2gf9_A 100 LMYDIANQESFAAVQDWATQIKTY-SWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFF 162 (189)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEE
Confidence 999999999998877766655432 23579999999999997642 35667777776554
No 41
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.92 E-value=1e-24 Score=143.08 Aligned_cols=134 Identities=20% Similarity=0.361 Sum_probs=101.9
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeEE-EEEEEcC--EEEEEEEcCCCCCchhchHhhhcCCCEEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 90 (153)
...++|+++|++|+|||||++++.+..+... .++.+... ..+...+ ..+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 3568999999999999999999998876543 44544433 2334444 589999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
|+|++++.++.....|+..+.......+.|+++|+||+|+.+.. +..++++..+++.+
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 144 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYV 144 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEE
Confidence 99999999998888877776654444579999999999997642 34455666665544
No 42
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.92 E-value=2e-24 Score=147.58 Aligned_cols=126 Identities=27% Similarity=0.358 Sum_probs=97.8
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEc---CEEEEEEEcCCCCCchh-chHhhhcCCCEEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK---NISFTVWDVGGQDKIRP-LWRHYFQNTQGLIF 90 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~i~d~~g~~~~~~-~~~~~~~~~~~ii~ 90 (153)
.+.++|+++|++|+|||||+++|.+..+....++.......+... ...+.+||+||++.+.. .+..+++.+|++++
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~ 84 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVF 84 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEE
Confidence 567999999999999999999999988776655655555556665 67899999999999887 78888999999999
Q ss_pred EEECCCcc-cHHHHHHHHHHHHcC--CCCCCceEEEEEeCCCccccCCHHHHH
Q 031797 91 VVDSNDRD-RVVEARDELHRMLNE--DELRDAVLLVFANKQDLPNAMNAAEIT 140 (153)
Q Consensus 91 v~d~~~~~-s~~~~~~~~~~~~~~--~~~~~~~iivv~~K~Dl~~~~~~~~~~ 140 (153)
|+|+++.. ++.....+|...+.. ....+.|+++|+||+|+.+.....++.
T Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 137 (214)
T 2fh5_B 85 VVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQ 137 (214)
T ss_dssp EEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHH
T ss_pred EEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHH
Confidence 99998753 466666677666543 223579999999999998766544433
No 43
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.92 E-value=4.9e-25 Score=144.82 Aligned_cols=132 Identities=20% Similarity=0.412 Sum_probs=103.0
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEE--EEEEEc--CEEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
...++|+++|++|+|||||++++.+..+.. ..++.+... ..+... ...+.+||+||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 467999999999999999999999887653 355555433 334443 468999999999999988999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|+|++++.++.....|+..+.... ++.|+++|+||+|+.+.. ...+++++.+++.+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 144 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFY 144 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEE
Confidence 9999999998988877766654432 578999999999997532 34566666666544
No 44
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.92 E-value=3.5e-24 Score=140.98 Aligned_cols=133 Identities=22% Similarity=0.425 Sum_probs=103.0
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEE--EEEEEc--CEEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
.+.++|+++|++|+|||||++++.+..+.. ..++.+... ..+... ...+.+||+||++.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 456999999999999999999999988653 355555443 233443 378999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|+|++++.++.....|+..+.. ...+..|+++|+||+|+.+.. ....+++..+.+.+
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 146 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQ-HGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFV 146 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHH-HSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHH-hCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEE
Confidence 99999999998887766655543 333689999999999997642 24455566665544
No 45
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.92 E-value=1.6e-24 Score=143.82 Aligned_cols=135 Identities=20% Similarity=0.344 Sum_probs=102.7
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCcee--eEEEEEEEcC---EEEEEEEcCCCCCchhchHhhhcCCCE
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN---ISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~--~~~~~~~~~~---~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (153)
..+.++|+++|++|+|||||++++.+..+.. ..+|.+ .....+...+ ..+.+||+||++.+...+..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 3567999999999999999999999887653 344554 3445556554 799999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCC--CCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 88 LIFVVDSNDRDRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+++|+|++++.++.....|+..+.... .....|+++|+||+|+.+.. ...++++..+++.+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 150 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSH 150 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEE
Confidence 999999999999887776655543311 01234589999999997632 34566677776554
No 46
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.92 E-value=7.4e-25 Score=150.09 Aligned_cols=134 Identities=25% Similarity=0.534 Sum_probs=104.5
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEE--EEEEc------------CEEEEEEEcCCCCCchhchH
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK------------NISFTVWDVGGQDKIRPLWR 79 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~~------------~~~~~i~d~~g~~~~~~~~~ 79 (153)
.+.++|+++|++|+|||||+++|.+..+.. ..+|.+..+. .+... ...+.+||+||++.+...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 456999999999999999999999887653 3455554432 23322 57899999999999999999
Q ss_pred hhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 80 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
.+++.+|++++|+|+++..++.....|+..+.......+.|+++|+||+|+.+.. ...++++..+++.+
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 176 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYF 176 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEE
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEE
Confidence 9999999999999999999998887776655443333689999999999997642 35566667776654
No 47
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.92 E-value=1.8e-24 Score=144.71 Aligned_cols=118 Identities=18% Similarity=0.294 Sum_probs=93.0
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEE-EEEE--cCEEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
....++|+++|++|+|||||++++.+..+.. +.+|.+..+. .+.. ....+.+||+||++.|...+..+++.+|+++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 3567999999999999999999999987754 3556554442 2232 3478999999999999988899999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
+|+|++++.++......|...+.... ++.|+++|+||+|+.+
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRT 125 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGG
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhc
Confidence 99999999999888544444433322 5799999999999974
No 48
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.92 E-value=8e-24 Score=143.51 Aligned_cols=138 Identities=19% Similarity=0.330 Sum_probs=106.9
Q ss_pred hcccccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEE-EEEEEcC--EEEEEEEcCCCCCchhchHhhhcCCC
Q 031797 11 KLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (153)
Q Consensus 11 ~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~ 86 (153)
.....+.++|+++|++|+|||||++++.+..+.. ..+|.+... ..+...+ ..+.+||+||++.+...+..+++.+|
T Consensus 8 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 87 (206)
T 2bov_A 8 GQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE 87 (206)
T ss_dssp ---CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred CCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCC
Confidence 3445667999999999999999999999887654 344554433 3344444 58999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
++++|+|+++..++.....|+..+.......+.|+++|+||+|+.+.. +..++++..+++.+
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 154 (206)
T 2bov_A 88 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYV 154 (206)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEE
Confidence 999999999999999888887777665444589999999999997642 34556666666544
No 49
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=3.4e-24 Score=142.45 Aligned_cols=134 Identities=21% Similarity=0.480 Sum_probs=97.7
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCcc--ccCCceeeEEE--EEEEcC--EEEEEEEcCCCCCchhchHhhhcCCCE
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVE--TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~--~~~~t~~~~~~--~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (153)
....++|+++|++|+|||||++++.+..+. ...++.+..+. .+...+ ..+.+||+||++.+...+..+++.+|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 356799999999999999999999998874 34556665543 234444 589999999999999989999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ...++++..+++.+
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 151 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFM 151 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEE
Confidence 999999999999888777766654422 2579999999999997542 34566666776554
No 50
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.92 E-value=5.8e-25 Score=146.70 Aligned_cols=133 Identities=21% Similarity=0.476 Sum_probs=80.8
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEE--EEEEEcC--EEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
...++|+++|++|+|||||++++.+..+.. ..++.+... ..+...+ ..+.+||+||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 457999999999999999999999877653 355555443 3445555 78999999999999988889999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|+|++++.++.....|+..+... ..++.|+++|+||+|+.+.. ...+++++++++.+
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 148 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFM 148 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEE
Confidence 999999999998888776665442 23579999999999997532 35566777776554
No 51
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.92 E-value=7.1e-24 Score=143.73 Aligned_cols=133 Identities=21% Similarity=0.466 Sum_probs=104.7
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEE--EEEEc--CEEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
...++|+++|++|+|||||++++.+..+.. ..++.+.... .+... ...+.+||+||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 456999999999999999999999988753 3555554433 33333 468999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|+|++++.++.....|+..+... ...+.|+++|+||+|+.+.. ...++++.++++.+
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 148 (203)
T 1zbd_A 86 LMYDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFF 148 (203)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEE
Confidence 999999999998887776665432 23579999999999997642 34567777776554
No 52
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.92 E-value=2.7e-24 Score=142.60 Aligned_cols=134 Identities=23% Similarity=0.406 Sum_probs=103.6
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEE--EEEEEc--CEEEEEEEcCCCCCchhchHhhhcCCCEE
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 88 (153)
....++|+++|++|+|||||++++.+..+.. ..++.+... ..+... ...+.+||+||++.+...+..+++.+|++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence 4567999999999999999999999888654 345554433 333443 46899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
++|+|+++..++.....|+..+... ...+.|+++|+||+|+.+.. +..+++++.+++.+
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 155 (179)
T 1z0f_A 92 LMVYDITRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFL 155 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEeCcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEE
Confidence 9999999999988877766655432 23579999999999997532 34556666666544
No 53
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.92 E-value=2.6e-24 Score=142.94 Aligned_cols=112 Identities=13% Similarity=0.165 Sum_probs=88.6
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEE-EEEEEcC--EEEEEEEcCCCCCchhchHhhhcCCCEEEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 91 (153)
.+.+||+++|++|+|||||++++.+..+....+|.+..+ ..+...+ ..+.+||+||++. ..+++++|++++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv 79 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFV 79 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEE
Confidence 567999999999999999999999988876666665443 2334433 6789999999976 4567889999999
Q ss_pred EECCCcccHHHHHHHHH--HHHcCCCCCCceEEEEEeCCCcc
Q 031797 92 VDSNDRDRVVEARDELH--RMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~--~~~~~~~~~~~~iivv~~K~Dl~ 131 (153)
||++++.++.....|+. ..+.....++.|+++|+||+|+.
T Consensus 80 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 80 FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred EECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 99999999988887633 22333333689999999999994
No 54
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.92 E-value=3.4e-24 Score=141.10 Aligned_cols=132 Identities=17% Similarity=0.247 Sum_probs=93.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCcccc---CCceeeEEEEEEEcC--EEEEEEEcCCCCCchh-chHhhhcCCCEEEE
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYKN--ISFTVWDVGGQDKIRP-LWRHYFQNTQGLIF 90 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~---~~t~~~~~~~~~~~~--~~~~i~d~~g~~~~~~-~~~~~~~~~~~ii~ 90 (153)
.+||+++|++|+|||||++++.+...... ..+.......+...+ ..+.+||+||++.+.. .+..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 47999999999999999999987654321 223333334444444 6888999999988865 66777889999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
|+|+++++++.....|+..+.......+.|+++|+||+|+.+.. ...++++..+++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 144 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHI 144 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEE
Confidence 99999999999999988888765544589999999999997432 35556777776554
No 55
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=2.8e-24 Score=146.12 Aligned_cols=133 Identities=22% Similarity=0.402 Sum_probs=104.0
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEE--EEEEEcC--EEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
.+.++|+++|++|+|||||++++.+..+.. ..+|.+... ..+...+ ..+.+||+||++.+...+..+++.+|+++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 456999999999999999999999887763 455655443 3444544 58999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|+|+++..++..+..|+..+... ...+.|+++|+||+|+.+.. ...++++..+++.+
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 166 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYL 166 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEE
Confidence 999999999998877776655432 23579999999999997532 34556666666554
No 56
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=7.3e-24 Score=142.50 Aligned_cols=134 Identities=25% Similarity=0.440 Sum_probs=105.0
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEE--EEEEE--cCEEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
...++|+++|++|+|||||++++.+..+.. ..++.+... ..+.. ....+.+||+||++.+...+..+++.+|+++
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 456999999999999999999999987653 355555443 33444 3478999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC----CHHHHHHHhCCCcc
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~----~~~~~~~~~~~~~~ 148 (153)
+|+|++++.++.....|+..+.......+.|+++|+||+|+.+.. ...+++++.+++.+
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 155 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFI 155 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEE
Confidence 999999999998888777776554444679999999999996432 34556666665543
No 57
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.92 E-value=1e-23 Score=141.90 Aligned_cols=133 Identities=23% Similarity=0.415 Sum_probs=103.5
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEE--EEEE--cCEEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
.+.++|+++|++|+|||||++++.+..+.. ..++.+.... .+.. ....+.+||+||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 456999999999999999999999987763 3455554433 2333 4578999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|+|++++.++.....|+..+... ...+.|+++|+||+|+.+.. ....+++..+++.+
T Consensus 103 ~v~D~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
T 2oil_A 103 LVFDLTKHQTYAVVERWLKELYDH-AEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFL 165 (193)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHTT-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEE
Confidence 999999999988877776666543 33679999999999997642 24455556665443
No 58
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.92 E-value=1.6e-24 Score=145.47 Aligned_cols=135 Identities=16% Similarity=0.243 Sum_probs=99.9
Q ss_pred ccccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEE-EEEE--cCEEEEEEEcCCCCCchhchHhhhcCCCEE
Q 031797 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (153)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 88 (153)
...+.+||+++|++|+|||||++++.+..+.. ..+|.+..+. .+.. ....+.+||+||++.+... ..+++.+|++
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 34667999999999999999999999988664 3556655432 2333 3468899999999988765 5688999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCC--CCCCceEEEEEeCCCcccc-----CCHHHHHHHhCCCcc
Q 031797 89 IFVVDSNDRDRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSL 148 (153)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~iivv~~K~Dl~~~-----~~~~~~~~~~~~~~~ 148 (153)
++|||++++.++.....|+..+.... ...+.|+++|+||+|+.+. .+..+++++++++++
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 162 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFF 162 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEE
Confidence 99999999999998887776654421 1147899999999999753 235677777777655
No 59
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.92 E-value=7e-24 Score=141.52 Aligned_cols=135 Identities=19% Similarity=0.356 Sum_probs=104.9
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeEE-EEEEEcC--EEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
....++|+++|++|+|||||++++.+..+... .++.+... ..+...+ ..+.+||+||++.+...+..+++.+|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 94 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence 45679999999999999999999998876543 44544433 2344444 58999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|+|++++.++.....|+..+.......+.|+++|+||+|+.+.. +..+++++++++.+
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 158 (187)
T 2a9k_A 95 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYV 158 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEE
Confidence 999999999998888877776654444579999999999997642 34456666666544
No 60
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.92 E-value=5.1e-24 Score=142.38 Aligned_cols=133 Identities=21% Similarity=0.386 Sum_probs=103.6
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEE--EEEEEcC--EEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
.+.++|+++|++|+|||||++++.+..+.. ..++.+... ..+...+ ..+.+||+||++.+...+..+++.+|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 457999999999999999999999887763 345555433 3444544 68999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|+|++++.++.....|+..+... ...+.|+++|+||+|+.+.. +..++++..+++.+
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 150 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARML-ASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFL 150 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEE
Confidence 999999999998887776655332 22679999999999997532 24555666665544
No 61
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.92 E-value=1.8e-24 Score=142.49 Aligned_cols=133 Identities=20% Similarity=0.418 Sum_probs=96.7
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEE--EEEE--cCEEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
...++|+++|++|+|||||++++.+..+.. ..++.+.... .+.. ....+.+||+||++.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 467999999999999999999999887653 4556655443 3333 3368999999999999988888999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|+|+++..++.....|+..+.. ....+.|+++|+||+|+.+.. +..++++..+.+.+
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 146 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRK-MLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHY 146 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHH-HHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHH-hcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEE
Confidence 99999999999888776655432 222578999999999997642 35566666665544
No 62
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.92 E-value=2.7e-24 Score=141.56 Aligned_cols=132 Identities=24% Similarity=0.509 Sum_probs=99.6
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEE--EEEEEc--CEEEEEEEcCCCCCchhchHhhhcCCCEEEE
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 90 (153)
..++|+++|++|+|||||++++.+..+.. ..++.+... ..+... ...+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 46899999999999999999999887653 345555433 334433 3689999999999999889999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC----CHHHHHHHhCCCcc
Q 031797 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSL 148 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~----~~~~~~~~~~~~~~ 148 (153)
|+|++++.++.....|+..+... ..++.|+++|+||+|+.+.. ...+++++++++.+
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 142 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEH-ANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFI 142 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEE
Confidence 99999999988877776655443 23579999999999995432 35566777776654
No 63
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.92 E-value=2.6e-24 Score=144.85 Aligned_cols=133 Identities=23% Similarity=0.288 Sum_probs=96.3
Q ss_pred hcccccccEEEEEcCCCCcHHHHHHHHhcCCcccc-----------CCceeeEEEEE-----EEcCEEEEEEEcCCCCCc
Q 031797 11 KLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----------IPTIGFNVETV-----EYKNISFTVWDVGGQDKI 74 (153)
Q Consensus 11 ~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-----------~~t~~~~~~~~-----~~~~~~~~i~d~~g~~~~ 74 (153)
.......+||+++|++|+|||||++.+.+...... .+|.+..+... ......+.+||+||++.+
T Consensus 8 ~~~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 87 (198)
T 3t1o_A 8 FANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY 87 (198)
T ss_dssp TTTTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC
T ss_pred hhccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH
Confidence 34456679999999999999999976655433222 23444433321 223468999999999999
Q ss_pred hhchHhhhcCCCEEEEEEECC------CcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCH---HHHHHHhCC
Q 031797 75 RPLWRHYFQNTQGLIFVVDSN------DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGL 145 (153)
Q Consensus 75 ~~~~~~~~~~~~~ii~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~---~~~~~~~~~ 145 (153)
...+..+++.+|++++|+|++ +.+++..+..|+... .....+.|+++|+||+|+.+.... .+++++.++
T Consensus 88 ~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~--~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~ 165 (198)
T 3t1o_A 88 NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEY--GLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGK 165 (198)
T ss_dssp SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHT--TCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCC
T ss_pred HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhh--ccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCC
Confidence 999999999999999999999 445666666665555 223478999999999999876544 444444555
No 64
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=3.4e-24 Score=144.36 Aligned_cols=119 Identities=18% Similarity=0.230 Sum_probs=94.4
Q ss_pred ccccccEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeEE-EEEEEcC--EEEEEEEcCCCCCchhchHhhhcCCCEE
Q 031797 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (153)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~i 88 (153)
.....++|+++|++|+|||||++++.+..+... .+|.+... ..+...+ ..+.+||+||++.+...+..+++.+|++
T Consensus 14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 334679999999999999999999998877543 45554433 2344433 7899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
++|+|++++.++......|...+... .++.|+++|+||+|+.+
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~ 136 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEY-APNVPFLLIGTQIDLRD 136 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECTTSTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhcc
Confidence 99999999999988874444443332 24799999999999975
No 65
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=6.7e-24 Score=144.68 Aligned_cols=137 Identities=23% Similarity=0.481 Sum_probs=103.1
Q ss_pred hcccccccEEEEEcCCCCcHHHHHHHHhcCCcc-ccCCceeeE--EEEEEEcC--EEEEEEEcCCCCCchhchHhhhcCC
Q 031797 11 KLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNT 85 (153)
Q Consensus 11 ~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~ 85 (153)
.......++|+++|++|+|||||++++.+..+. ...++.+.. ...+...+ ..+.+||+||++.+...+..+++.+
T Consensus 14 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (213)
T 3cph_A 14 GKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGA 93 (213)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTC
T ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccC
Confidence 334456799999999999999999999988765 334555543 34455555 6899999999999998899999999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC----CHHHHHHHhCCCcc
Q 031797 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSL 148 (153)
Q Consensus 86 ~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~----~~~~~~~~~~~~~~ 148 (153)
|++++|+|++++.++.....|+..+... ...+.|+++|+||+|+.... ...++++.++++.+
T Consensus 94 d~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 159 (213)
T 3cph_A 94 MGIILVYDVTDERTFTNIKQWFKTVNEH-ANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFI 159 (213)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHH-TTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEE
Confidence 9999999999998888877766655432 22579999999999995432 34566677776654
No 66
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.92 E-value=1.5e-23 Score=142.49 Aligned_cols=133 Identities=25% Similarity=0.450 Sum_probs=104.8
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEE--EEEEEcC--EEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
...++|+++|++|+|||||++++.+..+.. ..++.+... ..+...+ ..+.+||+||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 457999999999999999999999988763 345555443 3444444 58999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|+|++++.++.....|+..+... ...+.|+++|+||+|+.+.. ...++++..+++.+
T Consensus 86 lv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 148 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFL 148 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEE
Confidence 999999999998888776665432 23579999999999997642 34556666776654
No 67
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.92 E-value=4.2e-24 Score=145.60 Aligned_cols=117 Identities=18% Similarity=0.304 Sum_probs=93.1
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeEEE-EEEE--cCEEEEEEEcCCCCCchhchHhhhcCCCEEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 90 (153)
...+||+++|++|+|||||+++|.+..+... .+|.+..+. .+.. ....+.+||+||++.|...+..+++.+|++++
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 105 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 105 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence 5679999999999999999999999887643 556555443 2332 34789999999999999888999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
|||++++.++......|...+.... ++.|+++|+||+|+.+
T Consensus 106 v~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 106 CFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRT 146 (205)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGG
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhcc
Confidence 9999999999888444444433322 5799999999999974
No 68
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.91 E-value=4.7e-24 Score=143.48 Aligned_cols=133 Identities=21% Similarity=0.399 Sum_probs=102.1
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeE--EEEEEEcC--EEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
...+||+++|++|+|||||++++.+..+.. ..++.+.. ...+...+ ..+.+||+||++.+...+..+++.+|+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 556999999999999999999999887653 34444433 33444444 68999999999999998999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|+|+++..++.....|+..+... ...+.|+++|+||+|+.+.. +..+++++.+++.+
T Consensus 99 ~v~d~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 161 (191)
T 2a5j_A 99 LVYDITRRETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFM 161 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEE
Confidence 999999999998888776665442 23579999999999997532 34566666666544
No 69
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.91 E-value=8.2e-24 Score=140.28 Aligned_cols=133 Identities=18% Similarity=0.417 Sum_probs=102.8
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEE--EEEEEcC--EEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
.+.++|+++|++|+|||||++++.+..+.. ..++.+... ..+...+ ..+.+||+||++.+...+..+++.+|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 456999999999999999999999887653 345555433 3444444 68999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ....+++..+.+.+
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 154 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFI 154 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEE
Confidence 9999999999988877776654422 2579999999999997542 23445555665443
No 70
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.91 E-value=3.7e-24 Score=144.78 Aligned_cols=136 Identities=17% Similarity=0.246 Sum_probs=98.9
Q ss_pred ccccccEEEEEcCCCCcHHHHHHHHhcCCcc-ccCCcee--eEEEEEEEc--CEEEEEEEcCCCCCchh-chHhhhcCCC
Q 031797 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYK--NISFTVWDVGGQDKIRP-LWRHYFQNTQ 86 (153)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~-~~~~t~~--~~~~~~~~~--~~~~~i~d~~g~~~~~~-~~~~~~~~~~ 86 (153)
.....++|+++|++|+|||||+++|.+.... ...++.+ .....+... ...+.+||++|++.+.. .+..+++.+|
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 3456799999999999999999999754322 2222222 223334444 36789999999988764 6777889999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
++++|||++++.++.....|+..+.......+.|+++|+||+|+.+.. +..++++..+++++
T Consensus 99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~ 165 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHI 165 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEE
Confidence 999999999999999988888776554333579999999999997542 34556666666544
No 71
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.91 E-value=2e-24 Score=146.28 Aligned_cols=138 Identities=19% Similarity=0.397 Sum_probs=95.3
Q ss_pred hhcccccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeE--EEEEEEcC--EEEEEEEcCCCCCchhchHhhhcC
Q 031797 10 SKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQN 84 (153)
Q Consensus 10 ~~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~ 84 (153)
++....+.++|+++|++|+|||||++++.+..+.. ..++.+.. ...+...+ ..+.+||+||++.+...+..+++.
T Consensus 21 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 100 (199)
T 2p5s_A 21 KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRK 100 (199)
T ss_dssp -------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHH
T ss_pred CCcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhh
Confidence 44555678999999999999999999999887653 34555533 23344443 679999999999999999999999
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc-----------CCHHHHHHHhCCCcc
Q 031797 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----------MNAAEITDKLGLHSL 148 (153)
Q Consensus 85 ~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~-----------~~~~~~~~~~~~~~~ 148 (153)
+|++++|+|+++..++.....|+..+. .....+.|+++|+||+|+.+. ....++++..+++.+
T Consensus 101 ~d~iilv~d~~~~~s~~~~~~~~~~i~-~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 174 (199)
T 2p5s_A 101 ADGVLLLYDVTCEKSFLNIREWVDMIE-DAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFC 174 (199)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHH-HHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEE
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHH-HhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEE
Confidence 999999999999999988777655443 222357899999999999631 124556666666544
No 72
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.91 E-value=5.6e-25 Score=149.34 Aligned_cols=134 Identities=18% Similarity=0.237 Sum_probs=79.2
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC--Ccc-ccCCceee--EEEEEEEc----CEEEEEEEcCCCCCchhchHhhhcCC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG--EIV-TTIPTIGF--NVETVEYK----NISFTVWDVGGQDKIRPLWRHYFQNT 85 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~--~~~-~~~~t~~~--~~~~~~~~----~~~~~i~d~~g~~~~~~~~~~~~~~~ 85 (153)
...++|+++|++|+|||||++++.+. .+. ...+|.+. ....+... ...+.+||+||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 56789999999999999999999988 555 34556653 33445554 56899999999999999999999999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHHcCCC--CCCceEEEEEeCCCccc-c-----CCHHHHHHHhCCCcc
Q 031797 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPN-A-----MNAAEITDKLGLHSL 148 (153)
Q Consensus 86 ~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~iivv~~K~Dl~~-~-----~~~~~~~~~~~~~~~ 148 (153)
|++++|+|++++.++.....|+..+..... ..+.|+++|+||+|+.+ . .+..+++++++++.+
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~ 168 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFF 168 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEE
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEE
Confidence 999999999999999888877766654322 25799999999999976 2 235566666665544
No 73
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=1.6e-24 Score=145.79 Aligned_cols=133 Identities=20% Similarity=0.466 Sum_probs=104.0
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeEE--EEEE--EcCEEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~~--~~~~--~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
...+||+++|++|+|||||++++.+..+... .++.+... ..+. .....+.+||+||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 4669999999999999999999998776533 34444332 2333 35689999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|+|++++.++.....|+..+.. ....+.|+++|+||+|+.+.. ....+++..+++.+
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 163 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKT-YSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFF 163 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHH-hcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEE
Confidence 99999999999888776665543 334689999999999996542 35566777777654
No 74
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.91 E-value=7.9e-24 Score=138.46 Aligned_cols=133 Identities=19% Similarity=0.356 Sum_probs=102.5
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeEE-EEEEEc--CEEEEEEEcCCCCCchhchHhhhcCCCEEEEE
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~~-~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 91 (153)
+.++|+++|++|+|||||++++.+..+... .++.+... ..+... ...+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 357999999999999999999998876543 44444332 233333 35689999999999998999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC----CHHHHHHHhCCCcc
Q 031797 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSL 148 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~----~~~~~~~~~~~~~~ 148 (153)
+|+++..++.....++..+.......+.|+++|+||+|+.+.. ...+++++.+++.+
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 142 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYI 142 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEE
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEE
Confidence 9999999998887777665543333579999999999987632 35566777776654
No 75
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.91 E-value=7.2e-25 Score=145.97 Aligned_cols=131 Identities=19% Similarity=0.298 Sum_probs=91.4
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeEEE---EEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~~~---~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
..+.++|+++|++|+|||||++++.+..+... .+|.+.... .+......+.+||+||++.+...+..+++++|+++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 35679999999999999999999998876533 444443221 23334567889999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC---------------CHHHHHHHhCC
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---------------NAAEITDKLGL 145 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~---------------~~~~~~~~~~~ 145 (153)
+|+|++++.++......|...+.... ++.|+++|+||+|+.+.. +..++++.++.
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 154 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGA 154 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCC
Confidence 99999999999888754444444322 479999999999996532 24566777775
No 76
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.91 E-value=1.1e-23 Score=139.53 Aligned_cols=119 Identities=16% Similarity=0.404 Sum_probs=94.1
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEE--EEEEEcC--EEEEEEEcCCCCCchhchHhhhcCCCEE
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~i 88 (153)
....++|+++|++|+|||||++++.+..+.. ..++.+... ..+...+ ..+.+||+||++.+...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 3567999999999999999999999887653 355555543 3444444 6899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcC---CCCCCceEEEEEeCCCccc
Q 031797 89 IFVVDSNDRDRVVEARDELHRMLNE---DELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~~iivv~~K~Dl~~ 132 (153)
++|+|+++..++.....|+..+... ....+.|+++|+||+|+.+
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 130 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE 130 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccc
Confidence 9999999999988777666655432 2236789999999999974
No 77
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.91 E-value=5.3e-24 Score=144.83 Aligned_cols=121 Identities=19% Similarity=0.293 Sum_probs=93.1
Q ss_pred cccccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEE-EEEEE--cCEEEEEEEcCCCCCchhchHhhhcCCCE
Q 031797 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (153)
Q Consensus 12 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (153)
....+.+||+++|++|+|||||++++.++.+.. ..++.+... ..+.. ....+.+||+||++.+...+..+++.+|+
T Consensus 25 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 4gzl_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV 104 (204)
T ss_dssp -----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred hhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence 334677999999999999999999999887763 344444332 22333 34677799999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
+++|+|+++..++......|...+.... ++.|+++|+||+|+.+.
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~ 149 (204)
T 4gzl_A 105 FLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 149 (204)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccc
Confidence 9999999999999988755555544433 57999999999999764
No 78
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.91 E-value=3.4e-23 Score=139.85 Aligned_cols=131 Identities=21% Similarity=0.394 Sum_probs=100.8
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEE--EEEEcC-------------------------------
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYKN------------------------------- 60 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~~~------------------------------- 60 (153)
.+.++|+++|++|+|||||++++.+..+.. ..+|.+.... .+...+
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 467999999999999999999999987763 3455554432 233222
Q ss_pred --------EEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 61 --------ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 61 --------~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
..+.+||+||++.+...+..+++.+|++++|+|++++.++.....|+..+... ...|+++|+||+|+..
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~---~~~piilv~NK~D~~~ 161 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS---SNYIIILVANKIDKNK 161 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH---SCCEEEEEEECTTCC-
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh---CCCcEEEEEECCCccc
Confidence 78999999999999999999999999999999999999998888777766553 2389999999999432
Q ss_pred c----CCHHHHHHHhCCCcc
Q 031797 133 A----MNAAEITDKLGLHSL 148 (153)
Q Consensus 133 ~----~~~~~~~~~~~~~~~ 148 (153)
. .+..+++++.+++.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~ 181 (208)
T 3clv_A 162 FQVDILEVQKYAQDNNLLFI 181 (208)
T ss_dssp CCSCHHHHHHHHHHTTCEEE
T ss_pred ccCCHHHHHHHHHHcCCcEE
Confidence 2 234555666665544
No 79
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=1.3e-23 Score=138.33 Aligned_cols=133 Identities=14% Similarity=0.269 Sum_probs=99.5
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEEE-EEE--cCEEEEEEEcCCCCCchhchHhhhcCCCEEEEE
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~-~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 91 (153)
+.++|+++|++|+|||||++++.+..+.. ..++.+..... +.. ....+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 46899999999999999999999887653 34555444332 223 335799999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCC-CCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 92 VDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|++++.++.....++..+.... ..++.|+++|+||+|+.+.. ....+++..+++.+
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 144 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFM 144 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEE
Confidence 99999988887777765554321 22578999999999997543 24455566665543
No 80
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.91 E-value=7.5e-24 Score=143.42 Aligned_cols=120 Identities=18% Similarity=0.243 Sum_probs=88.0
Q ss_pred cccccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEE-EEEEEcC--EEEEEEEcCCCCCchhchHhhhcCCCE
Q 031797 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (153)
Q Consensus 12 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (153)
......++|+++|++|+|||||++++.+..+.. ..+|.+... ..+...+ ..+.+||+||++.+...+..+++++|+
T Consensus 15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 345678999999999999999999999887653 345554433 2344444 578899999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
+++|+|++++.++......|...+.... ++.|+++|+||+|+.+
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLRE 138 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhh
Confidence 9999999999999888744444333322 4799999999999975
No 81
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.91 E-value=2.3e-23 Score=139.78 Aligned_cols=135 Identities=20% Similarity=0.352 Sum_probs=93.4
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeEE-EEEEEcC--EEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
..+.++|+++|++|+|||||++++.+..+... .++.+... ..+...+ ..+.+||+||++.+...+..+++.+|+++
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 35679999999999999999999998876543 34444332 2344444 56999999999999988899999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc----CCHHHHHHHhCCCcc
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~----~~~~~~~~~~~~~~~ 148 (153)
+|+|+++..++.....|+..+.......+.|+++|+||+|+.+. .+..+++++++++.+
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 160 (190)
T 3con_A 98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFI 160 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEE
Confidence 99999999998888776665544323357899999999998753 245667777777654
No 82
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=2e-23 Score=142.21 Aligned_cols=121 Identities=20% Similarity=0.344 Sum_probs=93.2
Q ss_pred cccccccEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeEE-EEEEEcC--EEEEEEEcCCCCCchhchHhhhcCCCE
Q 031797 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (153)
Q Consensus 12 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (153)
.+....++|+++|++|+|||||++++.+..+... .++.+... ..+...+ ..+.+||+||++.+...+..+++.+|+
T Consensus 20 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 99 (207)
T 2fv8_A 20 FQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV 99 (207)
T ss_dssp GGGSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCE
T ss_pred cccccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCE
Confidence 3446678999999999999999999999877643 44544433 2344444 689999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
+++|+|++++.++......|...+.... ++.|+++|+||+|+.+.
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 100 ILMCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSD 144 (207)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhcc
Confidence 9999999999999888555555544322 57999999999999754
No 83
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.91 E-value=1.7e-24 Score=146.65 Aligned_cols=134 Identities=27% Similarity=0.521 Sum_probs=101.4
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcccc-CCcee--eEEEEEEEcC--EEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~--~~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
.+.++|+++|++|+|||||++++.+..+... .++.+ .....+...+ ..+.+||+||++.+...+..+++.+|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 4569999999999999999999998876532 33333 3344455555 68999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc-----CCHHHHHHHhCCCccc
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLR 149 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~-----~~~~~~~~~~~~~~~~ 149 (153)
+|+|+++..++.....|+..+. .....+.|+++|+||+|+.+. ....++++.++++.+.
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~-~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 174 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEID-RYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLE 174 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHH-SCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCC
T ss_pred EEEECCCHHHHHHHHHHHHHHH-HhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEE
Confidence 9999999999988887666654 444468999999999999753 4577888888877653
No 84
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.4e-23 Score=144.47 Aligned_cols=133 Identities=20% Similarity=0.366 Sum_probs=99.7
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeE--EEEEEEcC--EEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
...++|+++|++|+|||||+++|.+..+.. ..++.+.. ...+...+ ..+.+||+||++.+...+..+++.+|+++
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 556999999999999999999999987763 34555543 33455555 68999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|+|++++.++.....|+..+... ...+.|+++|+||+|+.+.. +..++++..+++.+
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 153 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELREN-ADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFT 153 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHH-CC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEE
Confidence 999999999998887776665432 23579999999999997532 34556666665544
No 85
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.91 E-value=1.1e-23 Score=142.86 Aligned_cols=121 Identities=19% Similarity=0.345 Sum_probs=95.3
Q ss_pred cccccccEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeEE-EEEEEcC--EEEEEEEcCCCCCchhchHhhhcCCCE
Q 031797 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (153)
Q Consensus 12 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (153)
.+....+||+++|++|+|||||++++.+..+... .++.+... ..+...+ ..+.+||+||++.+...+..+++.+|+
T Consensus 20 ~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 99 (201)
T 2gco_A 20 HMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV 99 (201)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSE
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCE
Confidence 3456679999999999999999999998876533 44544433 2344444 589999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
+++|+|++++.++......|...+.... ++.|+++|+||+|+.+.
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 100 ILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQD 144 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcC
Confidence 9999999999999888655555544322 57999999999999754
No 86
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.91 E-value=5.2e-24 Score=145.36 Aligned_cols=130 Identities=19% Similarity=0.288 Sum_probs=99.3
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEE-EEEEc--CEEEEEEEcCCCCCchhchHhhhcCCCEEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 90 (153)
...++|+++|++|+|||||++++.+..+.. ..+|.+.... .+... ...+.+||+||++.+...+..+++.+|++++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il 86 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 86 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence 467999999999999999999999887753 3455554332 23333 3699999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc-------------CCHHHHHHHhCC
Q 031797 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-------------MNAAEITDKLGL 145 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~-------------~~~~~~~~~~~~ 145 (153)
|+|++++.++......|...+.... ++.|+++|+||+|+.+. .+..+++++++.
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 153 (212)
T 2j0v_A 87 AFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGA 153 (212)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCC
Confidence 9999999999888744444444322 47999999999999653 234566677775
No 87
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.91 E-value=1.3e-23 Score=142.37 Aligned_cols=133 Identities=22% Similarity=0.380 Sum_probs=97.1
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeE--EEEEEEcC--EEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
.+.++|+++|++|+|||||++++.+..+.. ..++.+.. ...+...+ ..+.+||+||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 456999999999999999999999887653 34454433 33444544 78999999999988888889999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|+|++++.++.....|+..+.... .++.|+++|+||+|+.+.. +..++++..+++.+
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 165 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFL 165 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHT-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEE
Confidence 9999999999988887776654322 2679999999999997532 34455666665543
No 88
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.90 E-value=8e-24 Score=144.94 Aligned_cols=119 Identities=19% Similarity=0.340 Sum_probs=76.0
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEE-EEEEEc--CEEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
..+.++|+++|++|+|||||++++.+..+.. ..+|.+... ..+... ...+.+||+||++.+...+..+++++|+++
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 3567999999999999999999999887653 344444333 233443 358999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
+|+|++++.++......|...+.... ++.|+++|+||+|+.+.
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~ 153 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKD 153 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhcc
Confidence 99999999999888754444443322 57899999999999764
No 89
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.90 E-value=2.3e-23 Score=141.44 Aligned_cols=120 Identities=19% Similarity=0.350 Sum_probs=94.3
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEE--EEEEc--CEEEEEEEcCCCCCchhchHhhhcCCCEE
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 88 (153)
....++|+++|++|+|||||++++.+..+.. ..++.+.... .+... ...+.+||+||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 3567999999999999999999999887653 3555554433 33333 36899999999999988888999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCC---CCCCceEEEEEeCCCcccc
Q 031797 89 IFVVDSNDRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~iivv~~K~Dl~~~ 133 (153)
++|+|++++.++.....|+..+.... ...+.|+++|+||+|+.+.
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR 132 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCccc
Confidence 99999999999888877666554321 1247899999999999743
No 90
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.90 E-value=1.4e-23 Score=140.10 Aligned_cols=118 Identities=19% Similarity=0.281 Sum_probs=92.7
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeEE-EEEEEc--CEEEEEEEcCCCCCchhchHhhhcCCCEEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~~-~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 90 (153)
.+.++|+++|++|+|||||++++.+..+... .+|.+... ..+... ...+.+||+||++.+...+..+++.+|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 4579999999999999999999998876543 44444333 233333 3678899999999999888899999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
|+|++++.++......|...+.... ++.|+++|+||+|+.+.
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~ 124 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 124 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTC
T ss_pred EEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEccccccc
Confidence 9999999999888754444444322 47999999999999753
No 91
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.90 E-value=6.8e-24 Score=145.76 Aligned_cols=135 Identities=22% Similarity=0.346 Sum_probs=103.5
Q ss_pred cccccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEEE--EEE--cCEEEEEEEcCCCCCchhchHhhhcCCC
Q 031797 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (153)
Q Consensus 12 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 86 (153)
......+||+++|++|+|||||+++|+.+.+.. ..++.+..... +.. ....+.+||+||++.+...+..+++.+|
T Consensus 10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 89 (221)
T 3gj0_A 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ 89 (221)
T ss_dssp TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCC
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCC
Confidence 344667999999999999999999977665443 34555444332 223 4578999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC---CHHHHHHHhCCCcc
Q 031797 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSL 148 (153)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~---~~~~~~~~~~~~~~ 148 (153)
++++|+|+++..++.....|+..+.... ++.|+++|+||+|+.+.. ...++++..+++++
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 152 (221)
T 3gj0_A 90 CAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYY 152 (221)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccHHHHHHHHHcCCEEE
Confidence 9999999999999988887777665532 478999999999997543 34455666665544
No 92
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.90 E-value=4.8e-23 Score=138.78 Aligned_cols=119 Identities=23% Similarity=0.497 Sum_probs=90.9
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeE--EEEEEEcC--EEEEEEEcCCCCCchhchHhhhcCCCEE
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~i 88 (153)
....++|+++|++|+|||||++++.+..+.. ..++.+.. ...+...+ ..+.+||+||++.+...+..+++.+|++
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i 102 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI 102 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 3556899999999999999999999887653 34454433 33444444 6899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
++|+|+++..++.....|+..+ ......+.|+++|+||+|+.+.
T Consensus 103 ilV~D~~~~~s~~~~~~~~~~i-~~~~~~~~piilV~NK~Dl~~~ 146 (192)
T 2il1_A 103 ILVYDITKKETFDDLPKWMKMI-DKYASEDAELLLVGNKLDCETD 146 (192)
T ss_dssp EEEEETTCHHHHHTHHHHHHHH-HHHSCTTCEEEEEEECGGGGGG
T ss_pred EEEEECcCHHHHHHHHHHHHHH-HHhcCCCCcEEEEEECcccccc
Confidence 9999999999998877665444 3333357999999999999764
No 93
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.90 E-value=2e-23 Score=138.78 Aligned_cols=119 Identities=18% Similarity=0.348 Sum_probs=83.1
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeE--EEEEEEc---CEEEEEEEcCCCCCchhchHhhhcCCCE
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYK---NISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~~---~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (153)
....++|+++|++|+|||||++++.+..+.. ..++.+.. ...+... ...+.+||+||++.+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 3567999999999999999999999887653 34454433 3333333 4789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcC---CCCCCceEEEEEeCCCccc
Q 031797 88 LIFVVDSNDRDRVVEARDELHRMLNE---DELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~~iivv~~K~Dl~~ 132 (153)
+++|+|++++.++.....|+..+... ....+.|+++|+||+|+.+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 132 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE 132 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCG
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccc
Confidence 99999999999998887776665432 2236789999999999954
No 94
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=4.8e-23 Score=138.97 Aligned_cols=134 Identities=15% Similarity=0.276 Sum_probs=101.1
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEEE-EEEc--CEEEEEEEcCCCCCchhchHhhhcCCCEEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET-VEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~-~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 90 (153)
...++|+++|++|+|||||++++.+..+.. ..++.+..+.. +... ...+.+||+||++.+...+..+++.+|++++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL 85 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence 567999999999999999999999887653 34555443322 2233 3589999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCC-CCCCceEEEEEeCCCccccC----CHHHHHHHhCCCcc
Q 031797 91 VVDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSL 148 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~iivv~~K~Dl~~~~----~~~~~~~~~~~~~~ 148 (153)
|+|++++.++.....++..+.... ..++.|+++|+||+|+.+.. ....+++.++++.+
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 148 (199)
T 2gf0_A 86 VFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFM 148 (199)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEE
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEE
Confidence 999999999887777665443311 12478999999999997542 24555666665543
No 95
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=1.2e-22 Score=139.06 Aligned_cols=134 Identities=15% Similarity=0.187 Sum_probs=96.1
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCC--ccccCCceeeE--EEEEEEcC--EEEEEEEcCCCCC-chhchHhhhcCCCE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIGFN--VETVEYKN--ISFTVWDVGGQDK-IRPLWRHYFQNTQG 87 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~--~~~~~~t~~~~--~~~~~~~~--~~~~i~d~~g~~~-~~~~~~~~~~~~~~ 87 (153)
...+||+++|++|||||||+++|.+.. +....++.+.. ...+...+ ..+.+||++|.+. +......+++.+++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 456999999999999999999998643 33333334332 23344444 4678999999876 45556677889999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+++|||+++..+|.....|+..+.......++|+++|+||+|+.+.. +...+++..+++++
T Consensus 115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~ 180 (211)
T 2g3y_A 115 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFI 180 (211)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEE
Confidence 99999999999999888877666543233579999999999997532 23345566666544
No 96
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.89 E-value=1.6e-22 Score=145.51 Aligned_cols=129 Identities=24% Similarity=0.357 Sum_probs=100.6
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCC--cc--ccCCceeeEEEEEEE-cCEEEEEEEcCCCCCc-----hhchHhhhcCC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGE--IV--TTIPTIGFNVETVEY-KNISFTVWDVGGQDKI-----RPLWRHYFQNT 85 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~--~~--~~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~~-----~~~~~~~~~~~ 85 (153)
..+||+++|++|+|||||++++.++. +. ...+|.+.....+.. .+..+.+||+||++.+ ...+..+++++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 46899999999999999999998873 32 346688887777775 5789999999999888 67788889999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHH--HcCCCCCCceEEEEEeCCCcccc-----------CCHHHHHHHhCC
Q 031797 86 QGLIFVVDSNDRDRVVEARDELHRM--LNEDELRDAVLLVFANKQDLPNA-----------MNAAEITDKLGL 145 (153)
Q Consensus 86 ~~ii~v~d~~~~~s~~~~~~~~~~~--~~~~~~~~~~iivv~~K~Dl~~~-----------~~~~~~~~~~~~ 145 (153)
|++++|+|+++..++..+..|...+ +... .++.|+++|+||+|+.+. .+..++++.+++
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~-~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~ 153 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKY-SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGF 153 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHh-CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999998876543222 1111 257999999999999762 234566666663
No 97
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.89 E-value=3.5e-23 Score=139.85 Aligned_cols=120 Identities=22% Similarity=0.295 Sum_probs=83.9
Q ss_pred hcccccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeE--EEE--EE-EcCEEEEEEEcCCCCCchhch---Hhhh
Q 031797 11 KLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VET--VE-YKNISFTVWDVGGQDKIRPLW---RHYF 82 (153)
Q Consensus 11 ~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~--~~~--~~-~~~~~~~i~d~~g~~~~~~~~---~~~~ 82 (153)
.....+.+||+++|++|+|||||++++.+..........+.. ... +. .....+.+||+||++.|.... ..++
T Consensus 14 ~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 93 (196)
T 3llu_A 14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIF 93 (196)
T ss_dssp ------CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHH
T ss_pred CcccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccc
Confidence 344567899999999999999999988775332221111111 112 22 355899999999999987666 7899
Q ss_pred cCCCEEEEEEECCCc--ccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 83 QNTQGLIFVVDSNDR--DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 83 ~~~~~ii~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
+++|++++|||+++. +++.....++...... .++.|+++|+||+|+.+
T Consensus 94 ~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~ 143 (196)
T 3llu_A 94 RGTGALIYVIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLS 143 (196)
T ss_dssp HTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSC
T ss_pred ccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCc
Confidence 999999999999986 5555555555554321 25899999999999865
No 98
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.89 E-value=5.5e-23 Score=140.84 Aligned_cols=119 Identities=26% Similarity=0.377 Sum_probs=92.5
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeEEEEEEE--c-C--EEEEEEEcCCCCCchhchHhhhcCCCE
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEY--K-N--ISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~~~~~~~--~-~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (153)
....+||+++|++|+|||||++++.+..+... .++.+........ . + ..+.+||+||++.+...+..+++.+|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 35679999999999999999999998876533 4555554443332 1 1 789999999999999899999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
+++|+|+++..++.....|+..+... ...+.|+++|+||+|+.+.
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~ 132 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWVKEFQAV-VGNEAPIVVCANKIDIKNR 132 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH-HCSSSCEEEEEECTTCC--
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccc
Confidence 99999999999998887666555332 2246899999999999764
No 99
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.3e-23 Score=141.33 Aligned_cols=130 Identities=25% Similarity=0.361 Sum_probs=96.1
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcC----CCEEE
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN----TQGLI 89 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~----~~~ii 89 (153)
..+.++|+++|++|+|||||++++.+..+.....+.... .........+.+||+||+..+...+..+++. +|+++
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i 123 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPL-SAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLI 123 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCc-eeeeecCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEE
Confidence 356799999999999999999999988654321111110 1112256789999999999887777777765 89999
Q ss_pred EEEECC-CcccHHHHHHHHHHHHcCC---CCCCceEEEEEeCCCccccCCHHHHHHHhC
Q 031797 90 FVVDSN-DRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPNAMNAAEITDKLG 144 (153)
Q Consensus 90 ~v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~~iivv~~K~Dl~~~~~~~~~~~~~~ 144 (153)
+|+|++ +..++.....++..++... ..++.|+++|+||+|+.+.....++.+.+.
T Consensus 124 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~ 182 (193)
T 2ged_A 124 FMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALE 182 (193)
T ss_dssp EEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHH
T ss_pred EEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHH
Confidence 999999 8888988888877776432 225799999999999998877777666553
No 100
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.89 E-value=3.8e-23 Score=141.64 Aligned_cols=120 Identities=24% Similarity=0.320 Sum_probs=94.2
Q ss_pred cccccccEEEEEcCCCCcHHHHHHHHhcCCccc----cCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcC---
Q 031797 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN--- 84 (153)
Q Consensus 12 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~--- 84 (153)
....+.++|+++|++|+|||||++++.+..+.. ..++.+..+ ....+.+||+||++.+...+..+++.
T Consensus 7 ~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 81 (218)
T 1nrj_B 7 KQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-----DGSGVTLVDFPGHVKLRYKLSDYLKTRAK 81 (218)
T ss_dssp ---CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-----GGSSCEEEECCCCGGGTHHHHHHHHHHGG
T ss_pred CccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-----eCceEEEEECCCcHHHHHHHHHHHHhccc
Confidence 345677999999999999999999999887543 233332222 56789999999999998888888877
Q ss_pred -CCEEEEEEECC-CcccHHHHHHHHHHHHcCC---CCCCceEEEEEeCCCccccCCH
Q 031797 85 -TQGLIFVVDSN-DRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPNAMNA 136 (153)
Q Consensus 85 -~~~ii~v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~~iivv~~K~Dl~~~~~~ 136 (153)
+|++++|+|++ ++.++.....++..++... ...++|+++|+||+|+.+....
T Consensus 82 ~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 138 (218)
T 1nrj_B 82 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP 138 (218)
T ss_dssp GEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred cCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCH
Confidence 89999999999 8888988888887776432 2257999999999999876553
No 101
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.89 E-value=1.5e-23 Score=140.33 Aligned_cols=115 Identities=19% Similarity=0.373 Sum_probs=86.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcC--Ccc-ccCCceeeEEEEEE-------EcCEEEEEEEcCCCCCchhchHhhhcCCC
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLG--EIV-TTIPTIGFNVETVE-------YKNISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~--~~~-~~~~t~~~~~~~~~-------~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 86 (153)
.+||+++|++|+|||||++++.+. .+. ...+|.+....... .....+.+||++|++.+...+..++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999985 333 24566666654332 24578999999999988888888899999
Q ss_pred EEEEEEECCCc-ccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 87 GLIFVVDSNDR-DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 87 ~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
++++|+|+++. .++.....|+..+.... ++.|+++|+||+|+.+.
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~ 127 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDE 127 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCH
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccc
Confidence 99999999986 47877777776654332 47899999999999764
No 102
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.88 E-value=9.8e-24 Score=151.83 Aligned_cols=112 Identities=20% Similarity=0.216 Sum_probs=85.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCccc----cCCceeeEEEEEEEcCEEEEEEEcCCCCCchh---chHhhhcCCCEEEEE
Q 031797 19 RILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEYKNISFTVWDVGGQDKIRP---LWRHYFQNTQGLIFV 91 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~---~~~~~~~~~~~ii~v 91 (153)
||+++|.+|+||||+++++.+...+. ..+|.+.....+. ...++++||++|+++|.. ....++++++++++|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV 79 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV 79 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence 68999999999999999887654432 3567777766552 458999999999999964 357899999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcC--CCCCCceEEEEEeCCCcccc
Q 031797 92 VDSNDRDRVVEARDELHRMLNE--DELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~--~~~~~~~iivv~~K~Dl~~~ 133 (153)
||+++. +.+...+|..++.. ...+++|+++++||+|+.++
T Consensus 80 ~Ditd~--~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 80 IDSQDE--YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSE 121 (331)
T ss_dssp CCCSSC--TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCS
T ss_pred EECCch--HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCch
Confidence 999987 43444455433321 11268999999999999764
No 103
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.88 E-value=9.2e-22 Score=132.64 Aligned_cols=134 Identities=15% Similarity=0.181 Sum_probs=92.0
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCC--ccccCCceeeE--EEEEEEcC--EEEEEEEcCCCCC-chhchHhhhcCCCE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIGFN--VETVEYKN--ISFTVWDVGGQDK-IRPLWRHYFQNTQG 87 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~--~~~~~~t~~~~--~~~~~~~~--~~~~i~d~~g~~~-~~~~~~~~~~~~~~ 87 (153)
...+||+++|++|||||||+++|.+.. +....++.+.. ...+...+ ..+.+||++|.+. +......+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 456899999999999999999998633 33333333332 23344444 4678999999765 45556777888999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+++|||+++.+++.....|+..+.......+.|+++|+||+|+.... +...++...+++++
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 149 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFI 149 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceE
Confidence 99999999999999888777655443233578999999999997532 12344455555443
No 104
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.88 E-value=3e-21 Score=127.92 Aligned_cols=116 Identities=20% Similarity=0.255 Sum_probs=89.1
Q ss_pred ccccccEEEEEcCCCCcHHHHHHHHhcCCcccc-CC--ceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~--t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
...+.++|+++|++|+|||||++++.+..+... .+ +.......+...+..+.+||+||++.+...+..+++.+|+++
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 456789999999999999999999998876532 22 333444567778889999999999999888888899999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
+|+|+++...... ...+... .. .+.|+++|+||+|+.+.
T Consensus 84 ~v~d~~~~~~~~~-~~~l~~~-~~---~~~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 84 LVVAADDGVMPQT-VEAINHA-KA---ANVPIIVAINKMDKPEA 122 (178)
T ss_dssp EEEETTCCCCHHH-HHHHHHH-GG---GSCCEEEEEETTTSSCS
T ss_pred EEEECCCCCcHHH-HHHHHHH-Hh---CCCCEEEEEECccCCcC
Confidence 9999987433222 2222222 22 47899999999999764
No 105
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.79 E-value=7.1e-24 Score=143.96 Aligned_cols=120 Identities=20% Similarity=0.314 Sum_probs=93.8
Q ss_pred ccccccEEEEEcCCCCcHHHHHHHHhcCCcccc-CCceeeEE-E--EEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEE
Q 031797 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-E--TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (153)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~~~~-~--~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 88 (153)
...+.++|+++|++|+|||||++++.+..+... .+|.+... . .+......+.+||+||++.+...+..+++.+|++
T Consensus 26 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (204)
T 3th5_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 105 (204)
Confidence 335789999999999999999999998776533 34443322 1 2233456788999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
++|+|++++.++......|...+.... ++.|+++|+||+|+.+.
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~ 149 (204)
T 3th5_A 106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 149 (204)
Confidence 999999999999888755555554432 37999999999999753
No 106
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.87 E-value=5.5e-21 Score=125.77 Aligned_cols=126 Identities=23% Similarity=0.341 Sum_probs=90.0
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCcc-ccCCc--eeeEEEEEEEcCEEEEEEEcCCCCCch------hchHhhhc--C
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPT--IGFNVETVEYKNISFTVWDVGGQDKIR------PLWRHYFQ--N 84 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~~-~~~~t--~~~~~~~~~~~~~~~~i~d~~g~~~~~------~~~~~~~~--~ 84 (153)
+.++++++|++|+|||||++++.+..+. ...++ .......+...+..+.+||+||+..+. .....+++ +
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 81 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence 3589999999999999999999987643 22332 333445566678899999999998774 23345554 8
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc----CCHHHHHHHhCCCcc
Q 031797 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSL 148 (153)
Q Consensus 85 ~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~----~~~~~~~~~~~~~~~ 148 (153)
++++++|+|+++.++ ...++..+.. .+.|+++|+||+|+.+. .+.++++++++.+.+
T Consensus 82 ~~~~i~v~D~~~~~~---~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 142 (165)
T 2wji_A 82 PDLVVNIVDATALER---NLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVV 142 (165)
T ss_dssp CSEEEEEEETTCHHH---HHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEE
T ss_pred CCEEEEEecCCchhH---hHHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHHhCCCEE
Confidence 999999999987433 3334444332 36899999999998643 246788888887654
No 107
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.86 E-value=6e-21 Score=124.48 Aligned_cols=122 Identities=20% Similarity=0.311 Sum_probs=85.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCcc--ccCC--ceeeEEEEEEEcCEEEEEEEcCCCCC-------chhchHhhhcCCC
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDK-------IRPLWRHYFQNTQ 86 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~d~~g~~~-------~~~~~~~~~~~~~ 86 (153)
.+|+++|++|+|||||++++.+..+. ...+ +.......+...+..+.+||+||+.. +...+..+++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 58999999999999999999988643 2222 33344556677788999999999876 3445566789999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-CHHHHHHHhCC
Q 031797 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGL 145 (153)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-~~~~~~~~~~~ 145 (153)
++++|+|+++..+.. ..++...+.. .+.|+++|+||+|+.+.. ...+++ ++++
T Consensus 82 ~~i~v~d~~~~~~~~--~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~-~~~~ 135 (161)
T 2dyk_A 82 VVLFAVDGRAELTQA--DYEVAEYLRR---KGKPVILVATKVDDPKHELYLGPLY-GLGF 135 (161)
T ss_dssp EEEEEEESSSCCCHH--HHHHHHHHHH---HTCCEEEEEECCCSGGGGGGCGGGG-GGSS
T ss_pred EEEEEEECCCcccHh--HHHHHHHHHh---cCCCEEEEEECcccccchHhHHHHH-hCCC
Confidence 999999998754432 2333344333 468999999999997652 233333 4454
No 108
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.85 E-value=7.7e-21 Score=137.42 Aligned_cols=117 Identities=19% Similarity=0.282 Sum_probs=92.5
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEE-EEEEEcC--EEEEEEEcCCCCCchhchHhhhcCCCEEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 90 (153)
...++|+++|++|+|||||++++.+..+.. ..+|.+... ..+...+ ..+.+||+||++.+...+..+++.+|++++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 556999999999999999999999887653 344544333 2344444 466699999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
|+|++++.++......|...+.... ++.|+++|+||+|+.+
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~ 273 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 273 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhccc
Confidence 9999999999888754544444322 3799999999999965
No 109
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.85 E-value=1.6e-20 Score=125.53 Aligned_cols=127 Identities=23% Similarity=0.331 Sum_probs=94.6
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcc-ccCC--ceeeEEEEEEEcCEEEEEEEcCCCCCch------hchHhhhc--
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIR------PLWRHYFQ-- 83 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~d~~g~~~~~------~~~~~~~~-- 83 (153)
.+.++|+++|++|+|||||++++.+..+. ...+ +.......+...+..+.+||+||+..+. .....+++
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 84 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINE 84 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhcc
Confidence 46789999999999999999999986543 2233 3344455677788999999999998774 33445554
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc----CCHHHHHHHhCCCcc
Q 031797 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSL 148 (153)
Q Consensus 84 ~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~----~~~~~~~~~~~~~~~ 148 (153)
.++++++|+|.++ +.....++..+.. .+.|+++|+||+|+.+. ....++++.++++.+
T Consensus 85 ~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 146 (188)
T 2wjg_A 85 KPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVV 146 (188)
T ss_dssp CCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEE
T ss_pred CCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeE
Confidence 5999999999875 4455555555433 47899999999999653 367788888887654
No 110
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.85 E-value=3.7e-20 Score=125.22 Aligned_cols=133 Identities=20% Similarity=0.395 Sum_probs=99.3
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeE--EEEEEEcC--EEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
...++++++|++|+|||||++++.+..+.. ..++.+.. ...+...+ ..+.+||++|++.+......+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 346899999999999999999999987653 34554433 34455555 57789999999998888888899999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|+|+++..++.....|+..+.. ....+.|+++++||+|+.+.. .+..++++.++..+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~ 145 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRD-HADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFI 145 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHH-hcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEE
Confidence 99999998888777666554422 122578999999999997532 24556666665444
No 111
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.85 E-value=1.4e-20 Score=132.38 Aligned_cols=128 Identities=19% Similarity=0.289 Sum_probs=95.7
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcc-ccCC--ceeeEEEEEEEcCEEEEEEEcCCCCCchhc------hHhhh--c
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL------WRHYF--Q 83 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~------~~~~~--~ 83 (153)
.+.++|+++|++|+|||||++++.+..+. ...+ |.......+...+..+.+||+||...+... ...++ +
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 45689999999999999999999987654 2333 444555667777899999999999877542 23444 5
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc----CCHHHHHHHhCCCccc
Q 031797 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLR 149 (153)
Q Consensus 84 ~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~----~~~~~~~~~~~~~~~~ 149 (153)
.+|++++|+|+++.++.. .++..+. . .+.|+++++||+|+.+. ....++++.++++.+.
T Consensus 83 ~~d~ii~V~D~t~~~~~~---~~~~~l~-~---~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~ 145 (258)
T 3a1s_A 83 DADLVILVADSVNPEQSL---YLLLEIL-E---MEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVF 145 (258)
T ss_dssp CCSEEEEEEETTSCHHHH---HHHHHHH-T---TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEE
T ss_pred CCCEEEEEeCCCchhhHH---HHHHHHH-h---cCCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEE
Confidence 899999999999865432 3333333 3 37899999999999653 3578889999987663
No 112
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.85 E-value=5.4e-21 Score=126.74 Aligned_cols=115 Identities=20% Similarity=0.286 Sum_probs=83.1
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCcc--ccCC--ceeeEEEEEEEcCEEEEEEEcCCCCCchhc--------hHhhhc
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYFQ 83 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~~~ 83 (153)
...+|+++|++|+|||||++++.+.... ...+ +.+.....+...+..+.+||+||+..+... ...+++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE 82 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHH
Confidence 4689999999999999999999987642 2222 334445667777888999999998654211 123578
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 84 ~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
.+|++++|+|+++..++. ...++..+... ...++|+++|+||+|+.+
T Consensus 83 ~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~ 129 (172)
T 2gj8_A 83 QADRVLFMVDGTTTDAVD-PAEIWPEFIAR-LPAKLPITVVRNKADITG 129 (172)
T ss_dssp TCSEEEEEEETTTCCCCS-HHHHCHHHHHH-SCTTCCEEEEEECHHHHC
T ss_pred hCCEEEEEEECCCCCCHH-HHHHHHHHHHh-cccCCCEEEEEECccCCc
Confidence 999999999999887765 33444433322 224799999999999864
No 113
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.85 E-value=2.7e-20 Score=128.50 Aligned_cols=117 Identities=14% Similarity=0.184 Sum_probs=82.3
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc-c--CCceeeEEEEEEEcCEEEEEEEcCCCC------Cc---hhchHhhh
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-T--IPTIGFNVETVEYKNISFTVWDVGGQD------KI---RPLWRHYF 82 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~--~~t~~~~~~~~~~~~~~~~i~d~~g~~------~~---~~~~~~~~ 82 (153)
.+.++|+++|++|+|||||+++|.+..+.. . ..|.......+...+..+.+||+||+. .. ......+.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 106 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALA 106 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhh
Confidence 567999999999999999999999887642 1 224445555566678999999999983 31 11223446
Q ss_pred cCCCEEEEEEECCCcccHH--HHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 83 QNTQGLIFVVDSNDRDRVV--EARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 83 ~~~~~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
+.+|++++|+|+++..++. ....++..+ ... .++.|+++|+||+|+.+.
T Consensus 107 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l-~~~-~~~~piilv~nK~Dl~~~ 157 (228)
T 2qu8_A 107 HINGVILFIIDISEQCGLTIKEQINLFYSI-KSV-FSNKSIVIGFNKIDKCNM 157 (228)
T ss_dssp TSSEEEEEEEETTCTTSSCHHHHHHHHHHH-HTC-C-CCCEEEEEECGGGCC-
T ss_pred ccccEEEEEEecccccCcchHHHHHHHHHH-HHh-hcCCcEEEEEeCcccCCc
Confidence 7889999999999887764 222333333 332 247999999999999764
No 114
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.85 E-value=4.2e-20 Score=132.58 Aligned_cols=126 Identities=17% Similarity=0.130 Sum_probs=90.6
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc--cC--CceeeEEEEEEEcCEEEEEEEcCCCCC--------chhchHhhh
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT--TI--PTIGFNVETVEYKNISFTVWDVGGQDK--------IRPLWRHYF 82 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~--~~--~t~~~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~~~ 82 (153)
.+..+|+++|.+|+|||||+|++++.++.. .. .|.......+...+..+.+|||||... +......++
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l 84 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL 84 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence 345689999999999999999999987642 22 233333344566789999999999876 445566788
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCC-HHHHHHHh
Q 031797 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKL 143 (153)
Q Consensus 83 ~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~-~~~~~~~~ 143 (153)
+.+|++++|+|+++..+.. ..++...+.... ++.|+++|+||+|+.+... ..+..+++
T Consensus 85 ~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~ 143 (301)
T 1wf3_A 85 ADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEEAMKAYHEL 143 (301)
T ss_dssp SSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHHHHHHHHHT
T ss_pred hcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHHHHHHHHHh
Confidence 9999999999998764443 345555554422 4799999999999976544 34444443
No 115
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.85 E-value=2.2e-20 Score=132.49 Aligned_cols=126 Identities=21% Similarity=0.251 Sum_probs=93.4
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCcc-ccCC--ceeeEEEEEEEcCEEEEEEEcCCCCCchh----------chHhh-
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP----------LWRHY- 81 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~d~~g~~~~~~----------~~~~~- 81 (153)
+.++|+++|++|+|||||+|++.+..+. ...+ |.......+...+..+.+||+||+..+.. ....+
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 4689999999999999999999987753 2233 44555566777788999999999877652 12222
Q ss_pred -hcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc----CCHHHHHHHhCCCcc
Q 031797 82 -FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSL 148 (153)
Q Consensus 82 -~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~----~~~~~~~~~~~~~~~ 148 (153)
.+.+|++++|+|+++.++......++.. .+.|+++|+||+|+.+. ...+.+++.++++.+
T Consensus 82 ~~~~~d~ii~VvD~~~~~~~~~~~~~l~~-------~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i 146 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLERNLYLTLQLLE-------LGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVI 146 (274)
T ss_dssp HHTCCSEEEEEEEGGGHHHHHHHHHHHHH-------HTCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEE
T ss_pred hhcCCCEEEEEecCCChHHHHHHHHHHHh-------cCCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEE
Confidence 3799999999999875544443333333 26899999999999754 257788888888765
No 116
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.84 E-value=1.5e-20 Score=132.05 Aligned_cols=125 Identities=18% Similarity=0.204 Sum_probs=93.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCcc-ccCC--ceeeEEEEEEEcCEEEEEEEcCCCCCchh----------chHhhh--
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP----------LWRHYF-- 82 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~d~~g~~~~~~----------~~~~~~-- 82 (153)
.+|+++|++|+|||||+|++.+.... ...+ |.+.....+...+..+.+||+||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 48999999999999999999987643 2333 44455667777889999999999877653 344556
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc----CCHHHHHHHhCCCccc
Q 031797 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLR 149 (153)
Q Consensus 83 ~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~----~~~~~~~~~~~~~~~~ 149 (153)
+.+|++++|+|+++.++.... ...+.. .+.|+++|+||+|+... .....+++.++++.+.
T Consensus 82 ~~~d~vi~VvDas~~~~~~~l----~~~l~~---~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~ 145 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHLYL----TSQLFE---LGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIP 145 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHHHH----HHHHTT---SCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEE
T ss_pred CCCCEEEEEeeCCCchhHHHH----HHHHHH---cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEE
Confidence 899999999999875444332 223333 37899999999999754 3567788888887653
No 117
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.84 E-value=4.4e-20 Score=132.89 Aligned_cols=120 Identities=16% Similarity=0.129 Sum_probs=90.0
Q ss_pred hcccccccEEEEEcCCCCcHHHHHHHHhcCCccc--c--CCceeeEEEEEEEc-CEEEEEEEcCCCCCch----------
Q 031797 11 KLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT--T--IPTIGFNVETVEYK-NISFTVWDVGGQDKIR---------- 75 (153)
Q Consensus 11 ~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~--~--~~t~~~~~~~~~~~-~~~~~i~d~~g~~~~~---------- 75 (153)
.+..+..-.|+++|.+|+|||||+|++++.++.. . ..|........... +..+.+|||||+....
T Consensus 4 ~~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 4 HHHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp ---CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHH
Confidence 3455677899999999999999999999987642 1 22444444556667 8999999999986544
Q ss_pred hchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc-ccC
Q 031797 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP-NAM 134 (153)
Q Consensus 76 ~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~-~~~ 134 (153)
.....+++.+|++++|+|+++..+......|+..+ .. .+.|+++|+||+|+. +..
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l-~~---~~~pvilV~NK~Dl~~~~~ 139 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFI-KP---LNKPVIVVINKIDKIGPAK 139 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHT-GG---GCCCEEEEEECGGGSSSGG
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHH-Hh---cCCCEEEEEECccCCCCHH
Confidence 45667788999999999999887776655444443 33 468999999999997 443
No 118
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.84 E-value=8.1e-22 Score=131.95 Aligned_cols=127 Identities=19% Similarity=0.284 Sum_probs=87.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEEEEEEcCEEEEEEEcCC-----------CCCchhchHhhhcC-
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGG-----------QDKIRPLWRHYFQN- 84 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~d~~g-----------~~~~~~~~~~~~~~- 84 (153)
++|+++|++|+|||||++++.+..+.. ..++.......+... .+.+||+|| ++.+...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 79 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence 689999999999999999999887653 334443333444444 789999999 45556666666666
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHH---------HHcCCCCCCceEEEEEeCCCccccC--CHHHHHHHhCCC
Q 031797 85 TQGLIFVVDSNDRDRVVEARDELHR---------MLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLH 146 (153)
Q Consensus 85 ~~~ii~v~d~~~~~s~~~~~~~~~~---------~~~~~~~~~~~iivv~~K~Dl~~~~--~~~~~~~~~~~~ 146 (153)
++++++|+++.+..++......|.. ........+.|+++|+||+|+.+.. ..++++++++++
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVP 152 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCC
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhh
Confidence 6666666666666677665333332 1111112578999999999998653 577788888875
No 119
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.84 E-value=2.2e-20 Score=125.60 Aligned_cols=119 Identities=16% Similarity=0.166 Sum_probs=79.9
Q ss_pred hcccccccEEEEEcCCCCcHHHHHHHHhcCCcc-ccCCceeeE--EEEEEEcCEEEEEEEcCC----------CCCchhc
Q 031797 11 KLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKNISFTVWDVGG----------QDKIRPL 77 (153)
Q Consensus 11 ~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~-~~~~t~~~~--~~~~~~~~~~~~i~d~~g----------~~~~~~~ 77 (153)
+......++|+++|++|+|||||++++.+..+. ...++.+.. ...... +.++.+||+|| ++.+...
T Consensus 17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 95 (195)
T 1svi_A 17 QYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-NDELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp GSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TTTEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred hCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE-CCcEEEEECCCCCccccCHHHHHHHHHH
Confidence 344567899999999999999999999988643 223333221 122222 34799999999 5556666
Q ss_pred hHhhhcCC---CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCC
Q 031797 78 WRHYFQNT---QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (153)
Q Consensus 78 ~~~~~~~~---~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~ 135 (153)
...+++.+ |++++|+|+++..++.... +...+.. .+.|+++|+||+|+.+...
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~---~~~p~i~v~nK~Dl~~~~~ 151 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY---YGIPVIVIATKADKIPKGK 151 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH---TTCCEEEEEECGGGSCGGG
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH---cCCCEEEEEECcccCChHH
Confidence 66777766 9999999999877765532 2222222 4689999999999987654
No 120
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.83 E-value=1.7e-19 Score=126.12 Aligned_cols=120 Identities=18% Similarity=0.213 Sum_probs=81.4
Q ss_pred ccccccEEEEEcCCCCcHHHHHHHHhcCCcccc-----CCceeeEEEEEEEcCEEEEEEEcCCC--------CCchhchH
Q 031797 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEYKNISFTVWDVGGQ--------DKIRPLWR 79 (153)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-----~~t~~~~~~~~~~~~~~~~i~d~~g~--------~~~~~~~~ 79 (153)
.....++|+++|.+|+|||||+|++++.+.... ..|...........+..+.+|||||. +.+.....
T Consensus 17 ~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~ 96 (247)
T 3lxw_A 17 QGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERG 96 (247)
T ss_dssp ---CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHH
T ss_pred cCCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHH
Confidence 345679999999999999999999998875421 13444555667788999999999996 33333333
Q ss_pred hhh----cCCCEEEEEEECCCcccHH-HHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 80 HYF----QNTQGLIFVVDSNDRDRVV-EARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 80 ~~~----~~~~~ii~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
.++ +++|++++|+|+++..... ....++...+.. ...+.|+++++||+|+.+.
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~-~~~~~~iilv~nK~Dl~~~ 154 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGE-DVLKWMVIVFTRKEDLAGG 154 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCG-GGGGGEEEEEECGGGGTTC
T ss_pred HHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhCh-hhhccEEEEEEchHhcCCC
Confidence 333 8999999999997532222 223333333321 1236899999999999753
No 121
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.83 E-value=5.4e-20 Score=129.61 Aligned_cols=116 Identities=12% Similarity=0.132 Sum_probs=80.5
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcc--cc--CCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhc-------
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TT--IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ------- 83 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~--~~--~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~------- 83 (153)
.+.++|+++|.+|+|||||++++++.... .. ..|.......+...+..+.+|||||+..+......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~ 113 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV 113 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence 46799999999999999999999988753 22 22444455667788899999999999877544433333
Q ss_pred --CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCC--CceEEEEEeCCCcc
Q 031797 84 --NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR--DAVLLVFANKQDLP 131 (153)
Q Consensus 84 --~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~iivv~~K~Dl~ 131 (153)
++|++++|++++... +......+...+...... ..|+++|+||+|+.
T Consensus 114 ~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 114 NRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp TCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred cCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 789999999987543 333322222222221112 24899999999995
No 122
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.83 E-value=1.9e-19 Score=127.33 Aligned_cols=127 Identities=21% Similarity=0.264 Sum_probs=94.7
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCcc-ccCC--ceeeEEEEEEEcCEEEEEEEcCCCCCchh------chHhhh--cC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP------LWRHYF--QN 84 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~~~--~~ 84 (153)
+.++|+++|++|+|||||++++.+..+. ...+ |.......+...+..+.+||+||+..+.. ....++ ++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 4689999999999999999999987653 2233 44445566777888999999999887754 344455 68
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc----CCHHHHHHHhCCCcc
Q 031797 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSL 148 (153)
Q Consensus 85 ~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~----~~~~~~~~~~~~~~~ 148 (153)
+|++++|+|+++. .....++...... ...|+++++||+|+.+. .....+++.++++.+
T Consensus 82 ~d~vi~v~D~~~~---~~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~ 143 (271)
T 3k53_A 82 ADVIVDIVDSTCL---MRNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVI 143 (271)
T ss_dssp CSEEEEEEEGGGH---HHHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEE
T ss_pred CcEEEEEecCCcc---hhhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEE
Confidence 9999999999864 3334444444432 23899999999998642 357888888888765
No 123
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.82 E-value=5e-19 Score=119.09 Aligned_cols=133 Identities=20% Similarity=0.406 Sum_probs=99.5
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcc-ccCCceeeE--EEEEEEcC--EEEEEEEcCCCCCchhchHhhhcCCCEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 89 (153)
...++++++|++|+|||||++++.+..+. ...+|.+.. ...+...+ ..+.+||++|.+++...+..+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 34589999999999999999999988765 345555544 34455555 45667999999999888888899999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----CHHHHHHHhCCCcc
Q 031797 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 148 (153)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----~~~~~~~~~~~~~~ 148 (153)
+|+|+++..++.....|+..+.. ....+.|+++++||+|+.+.. .+..++++.++..+
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~l 169 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRD-HADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFI 169 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHH-hcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEE
Confidence 99999998888776666554322 122578999999999997532 34556666665444
No 124
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.82 E-value=5.7e-20 Score=130.11 Aligned_cols=124 Identities=19% Similarity=0.282 Sum_probs=89.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCc-cccCC--ceeeEEEEEEEcCEEEEEEEcCCCCCch------hchHhhhc--CC
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGEI-VTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIR------PLWRHYFQ--NT 85 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~~-~~~~~--t~~~~~~~~~~~~~~~~i~d~~g~~~~~------~~~~~~~~--~~ 85 (153)
.++|+++|++|+|||||++++.+... ....+ |.......+.. +..+.+||+||+..+. .....++. .+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~ 81 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRA 81 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCC
Confidence 57999999999999999999998653 33333 33333333333 6789999999998775 34455554 69
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc----CCHHHHHHHhCCCcc
Q 031797 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSL 148 (153)
Q Consensus 86 ~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~----~~~~~~~~~~~~~~~ 148 (153)
|++++|+|+++.++. ..+...+.. .+.|+++++||+|+... .....+++.++++.+
T Consensus 82 d~vi~V~D~t~~e~~---~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi 141 (272)
T 3b1v_A 82 DSILNVVDATNLERN---LYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVV 141 (272)
T ss_dssp SEEEEEEEGGGHHHH---HHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEE
T ss_pred CEEEEEecCCchHhH---HHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEE
Confidence 999999999875443 333333332 47899999999998643 357788888888765
No 125
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.82 E-value=3.6e-20 Score=124.26 Aligned_cols=120 Identities=18% Similarity=0.179 Sum_probs=81.3
Q ss_pred hcccccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEE-EEEEcCEEEEEEEcCC----------CCCchhchH
Q 031797 11 KLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-TVEYKNISFTVWDVGG----------QDKIRPLWR 79 (153)
Q Consensus 11 ~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~i~d~~g----------~~~~~~~~~ 79 (153)
+......++|+++|++|+|||||++++.+.......++.+.... .....+.++.+||+|| ++.+.....
T Consensus 17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 96 (195)
T 3pqc_A 17 DYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVE 96 (195)
T ss_dssp CCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred hCCCCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHH
Confidence 34456678999999999999999999999875444444333221 2222345788999999 445556666
Q ss_pred hhhcCC---CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCC
Q 031797 80 HYFQNT---QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (153)
Q Consensus 80 ~~~~~~---~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~ 135 (153)
.+++.+ +++++|+|+++..+.... .+...+.. .+.|+++|+||+|+.+...
T Consensus 97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~---~~~p~i~v~nK~Dl~~~~~ 150 (195)
T 3pqc_A 97 DYFKNRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKS---LNIPFTIVLTKMDKVKMSE 150 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCGGG
T ss_pred HHHhcCcCceEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEEChhcCChHH
Confidence 666655 999999998765443222 11222222 2689999999999976543
No 126
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.82 E-value=6.9e-21 Score=133.73 Aligned_cols=120 Identities=12% Similarity=0.139 Sum_probs=83.4
Q ss_pred cccccEEEEEcCC---------CCcHHHHHHHHhcC---Ccc-ccCCce-eeEEE------------------EEEEcCE
Q 031797 14 AKKEMRILMVGLD---------AAGKTTILYKLKLG---EIV-TTIPTI-GFNVE------------------TVEYKNI 61 (153)
Q Consensus 14 ~~~~~~i~i~G~~---------~~GKtsli~~~~~~---~~~-~~~~t~-~~~~~------------------~~~~~~~ 61 (153)
..+.+||+++|.+ |||||||+++|.+. .+. ...++. +..+. .++....
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 4566999999999 99999999999984 343 233333 22110 1234567
Q ss_pred EEEEEE-----------------------cCCCCCchhchHhhhc---------------------CCCEEEEEEECCCc
Q 031797 62 SFTVWD-----------------------VGGQDKIRPLWRHYFQ---------------------NTQGLIFVVDSNDR 97 (153)
Q Consensus 62 ~~~i~d-----------------------~~g~~~~~~~~~~~~~---------------------~~~~ii~v~d~~~~ 97 (153)
.+.+|| ++|+++|...+..+++ ++|++++|||++++
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~ 175 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG 175 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence 899999 5666666666666666 79999999999998
Q ss_pred --ccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 98 --DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 98 --~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
.++..+..|+..+.......+.|+++|+||+|+.+.
T Consensus 176 ~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~ 213 (255)
T 3c5h_A 176 MNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVE 213 (255)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCH
T ss_pred chhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccccc
Confidence 899988877776654322257999999999999754
No 127
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.81 E-value=7e-20 Score=125.65 Aligned_cols=120 Identities=19% Similarity=0.178 Sum_probs=81.3
Q ss_pred hcccccccEEEEEcCCCCcHHHHHHHHhcCCc-c--ccCC--ceeeEEEEEE-EcCEEEEEEEcCCCCC----------c
Q 031797 11 KLFAKKEMRILMVGLDAAGKTTILYKLKLGEI-V--TTIP--TIGFNVETVE-YKNISFTVWDVGGQDK----------I 74 (153)
Q Consensus 11 ~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~-~--~~~~--t~~~~~~~~~-~~~~~~~i~d~~g~~~----------~ 74 (153)
+.......+|+++|.+|+|||||++++.+... . ...+ |.......+. ..+..+.+||+||... +
T Consensus 23 ~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 102 (223)
T 4dhe_A 23 DLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHW 102 (223)
T ss_dssp GSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHH
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHH
Confidence 34456679999999999999999999998862 2 2222 3333333333 3467899999999532 2
Q ss_pred hhchHhhhcC---CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCC
Q 031797 75 RPLWRHYFQN---TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (153)
Q Consensus 75 ~~~~~~~~~~---~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~ 135 (153)
......+++. +|++++|+|+++..+ .....+...+.. .+.|+++|+||+|+.+...
T Consensus 103 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~--~~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~ 161 (223)
T 4dhe_A 103 EQLLSSYLQTRPQLCGMILMMDARRPLT--ELDRRMIEWFAP---TGKPIHSLLTKCDKLTRQE 161 (223)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCC--HHHHHHHHHHGG---GCCCEEEEEECGGGSCHHH
T ss_pred HHHHHHHHhcCcCcCEEEEEEeCCCCCC--HHHHHHHHHHHh---cCCCEEEEEeccccCChhh
Confidence 3444455554 778999999986433 233334444444 5689999999999976543
No 128
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.80 E-value=1.7e-19 Score=125.31 Aligned_cols=134 Identities=16% Similarity=0.206 Sum_probs=86.0
Q ss_pred hcccccccEEEEEcCCCCcHHHHHHHHhcCCcccc-----CCceeeEEEEEEEcCEEEEEEEcCCCC-----------Cc
Q 031797 11 KLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEYKNISFTVWDVGGQD-----------KI 74 (153)
Q Consensus 11 ~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-----~~t~~~~~~~~~~~~~~~~i~d~~g~~-----------~~ 74 (153)
.......++|+++|++|+|||||++++++..+... ..|.......+...+..+.+||+||.. .+
T Consensus 23 ~~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~ 102 (239)
T 3lxx_A 23 QEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEI 102 (239)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHH
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHH
Confidence 34446679999999999999999999998776432 223444455677788999999999943 23
Q ss_pred hhchHhhhcCCCEEEEEEECCCcccHH-HHHHHHHHHHcCCCCCCceEEEEEeCCCccccC-----------CHHHHHHH
Q 031797 75 RPLWRHYFQNTQGLIFVVDSNDRDRVV-EARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----------NAAEITDK 142 (153)
Q Consensus 75 ~~~~~~~~~~~~~ii~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~-----------~~~~~~~~ 142 (153)
...+..+.+++|++++|+|+++..... ....++...+... ...|+++|+||+|+.... ...++.++
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~ 180 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI 180 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH
Confidence 344455567889999999987544421 1222232222111 235899999999986542 24555666
Q ss_pred hCCC
Q 031797 143 LGLH 146 (153)
Q Consensus 143 ~~~~ 146 (153)
++..
T Consensus 181 ~~~~ 184 (239)
T 3lxx_A 181 FGDR 184 (239)
T ss_dssp HSSS
T ss_pred cCCE
Confidence 6543
No 129
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.80 E-value=3.1e-19 Score=137.02 Aligned_cols=116 Identities=23% Similarity=0.341 Sum_probs=83.0
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCccc-cCCceeeEEEEEE------------EcCEEEEEEEcCCCCCchhchHh
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVE------------YKNISFTVWDVGGQDKIRPLWRH 80 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~------------~~~~~~~i~d~~g~~~~~~~~~~ 80 (153)
..+.+||+++|.+|+|||||++++.+..+.. ..+|.+....... .....+.+||+||++.+......
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 4567999999999999999999999987653 3566666554331 13589999999999999999899
Q ss_pred hhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 81 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
+++.+|++++|+|+++.+... .|+..+.. .. ++.|+++|+||+|+.+..
T Consensus 118 ~l~~~d~ii~V~D~s~~~~~~---~~~~~l~~-~~-~~~pvilV~NK~Dl~~~~ 166 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTDSNKH---YWLRHIEK-YG-GKSPVIVVMNKIDENPSY 166 (535)
T ss_dssp HHHSSEEEEEEECGGGGGGHH---HHHHHHHH-HS-SSCCEEEEECCTTTCTTC
T ss_pred HccCCcEEEEEEeCCCchhHH---HHHHHHHH-hC-CCCCEEEEEECCCccccc
Confidence 999999999999998654443 33333322 11 468999999999997643
No 130
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.79 E-value=9.5e-19 Score=130.12 Aligned_cols=120 Identities=18% Similarity=0.097 Sum_probs=85.1
Q ss_pred cccccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEE-----------------------EEEEEcCEEEEEEEc
Q 031797 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV-----------------------ETVEYKNISFTVWDV 68 (153)
Q Consensus 12 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~-----------------------~~~~~~~~~~~i~d~ 68 (153)
......++|+++|++++|||||+++|.+.............. .........+.+||+
T Consensus 3 ~~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEEC
Confidence 345678999999999999999999998753221100000000 000112278999999
Q ss_pred CCCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 69 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 69 ~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
|||+.|...+...+..+|++++|+|+++..++.....++...... ...|+++++||+|+.+..
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~ 145 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKE 145 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHH
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchH
Confidence 999999999999999999999999998776565555555433221 225899999999998654
No 131
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.78 E-value=6.6e-18 Score=118.62 Aligned_cols=118 Identities=16% Similarity=0.172 Sum_probs=78.0
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCc-cc-cC---CceeeEEEEEEEcCEEEEEEEcCCCCCchh-----------c
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEI-VT-TI---PTIGFNVETVEYKNISFTVWDVGGQDKIRP-----------L 77 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~-~~-~~---~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~-----------~ 77 (153)
....++|+++|++|+|||||++++++... .. .. .|.......+...+..+.+|||||+..+.. .
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999998763 22 12 344445566777889999999999765422 1
Q ss_pred hHhhhcCCCEEEEEEECCCcccHH-HHHHHHHHHHcCCCCCCceEEEEEe-CCCcccc
Q 031797 78 WRHYFQNTQGLIFVVDSNDRDRVV-EARDELHRMLNEDELRDAVLLVFAN-KQDLPNA 133 (153)
Q Consensus 78 ~~~~~~~~~~ii~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~~iivv~~-K~Dl~~~ 133 (153)
...+++.+|++++|+|+++..... ....++....... ...|+++++| |+|+.+.
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~--~~~~~i~vv~nK~Dl~~~ 154 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED--AMGHTIVLFTHKEDLNGG 154 (260)
T ss_dssp HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECGGGGTTC
T ss_pred HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch--hhccEEEEEEcccccCCc
Confidence 223678999999999998633222 2223333333211 1345555555 9999854
No 132
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.78 E-value=1.4e-18 Score=122.88 Aligned_cols=118 Identities=11% Similarity=0.115 Sum_probs=78.7
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcccc----CCceeeEEEEEEEcCEEEEEEEcCCCCCchhchH-------hh--
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR-------HY-- 81 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~-------~~-- 81 (153)
...++|+++|.+|+|||||++++++..+... ..+.......+...+.++.+|||||...+..... .+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 3579999999999999999999998775321 1233333445667889999999999866542211 11
Q ss_pred hcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCC--ceEEEEEeCCCcccc
Q 031797 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD--AVLLVFANKQDLPNA 133 (153)
Q Consensus 82 ~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~~iivv~~K~Dl~~~ 133 (153)
.+.+|++++|+|++.. ++......+...+......+ .|+++|+||+|+...
T Consensus 117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 2468999999998643 34333323333332211122 689999999999654
No 133
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.78 E-value=1e-18 Score=132.09 Aligned_cols=118 Identities=20% Similarity=0.249 Sum_probs=72.0
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCc--cccCC--ceeeEEEEEEEcCEEEEEEEcCCCCCchhch--------Hhhh
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLW--------RHYF 82 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~--------~~~~ 82 (153)
...++|+++|.+|+|||||+|++.+.+. ....+ |.......+...+..+.+|||||+..+.... ..++
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 4568999999999999999999998753 23322 4444456677889999999999987665332 3467
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCC
Q 031797 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (153)
Q Consensus 83 ~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~ 135 (153)
+.+|++++|+|+++..++..... +..++... .+.|+++|+||+|+.+...
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~-~~~~l~~l--~~~piIvV~NK~Dl~~~~~ 360 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTE-IRELKAAH--PAAKFLTVANKLDRAANAD 360 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHH-HHHHHHHC--TTSEEEEEEECTTSCTTTH
T ss_pred ccCCEEEEEEECCCCcchhhhHH-HHHHHHhc--CCCCEEEEEECcCCCCccc
Confidence 89999999999998877643211 11222222 2689999999999976553
No 134
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.77 E-value=2.9e-18 Score=128.77 Aligned_cols=111 Identities=22% Similarity=0.267 Sum_probs=78.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCcc--ccCC--ceeeEEEEEEEcCEEEEEEEcCCCCC---------chhchHhhhcC
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDK---------IRPLWRHYFQN 84 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~d~~g~~~---------~~~~~~~~~~~ 84 (153)
.+|+++|.+|||||||+|++.+.+.. ...+ |.+..+..+.+.+..+.+|||||.+. +......++++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 37999999999999999999987643 2222 44455677788899999999999764 23456678899
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 85 ~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
+|++++|+|+++..+... .++..+++. .+.|+++|+||+|+.+.
T Consensus 82 ad~il~V~D~~~~~~~~d--~~i~~~l~~---~~~p~ilv~NK~D~~~~ 125 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKED--ESLADFLRK---STVDTILVANKAENLRE 125 (439)
T ss_dssp CSEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCEEEEEESCCSHHH
T ss_pred CCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEeCCCCccc
Confidence 999999999986544432 233333332 36899999999998643
No 135
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.77 E-value=2.1e-18 Score=124.95 Aligned_cols=86 Identities=31% Similarity=0.515 Sum_probs=76.5
Q ss_pred CceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECC----------CcccHHHHHHHHHHHHcCCCC
Q 031797 47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRDRVVEARDELHRMLNEDEL 116 (153)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~ 116 (153)
+|.|+....+..++..+++||++|+++++..|..++++++++|+|+|++ +..++.+...++..+++....
T Consensus 147 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~ 226 (340)
T 4fid_A 147 KTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL 226 (340)
T ss_dssp CCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred ceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence 3566677778888999999999999999999999999999999999998 778899999999998877655
Q ss_pred CCceEEEEEeCCCccc
Q 031797 117 RDAVLLVFANKQDLPN 132 (153)
Q Consensus 117 ~~~~iivv~~K~Dl~~ 132 (153)
.++|+++++||+|+..
T Consensus 227 ~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 227 KGAVKLIFLNKMDLFE 242 (340)
T ss_dssp TTSEEEEEEECHHHHH
T ss_pred CCCeEEEEEECchhhh
Confidence 7899999999999864
No 136
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.77 E-value=3.3e-19 Score=132.92 Aligned_cols=129 Identities=21% Similarity=0.220 Sum_probs=84.4
Q ss_pred ccccccEEEEEcCCCCcHHHHHHHHhcCCcc--cc--CCceeeEEEEEEEcCE-EEEEEEcCCCCCchhc-------hHh
Q 031797 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV--TT--IPTIGFNVETVEYKNI-SFTVWDVGGQDKIRPL-------WRH 80 (153)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~--~~--~~t~~~~~~~~~~~~~-~~~i~d~~g~~~~~~~-------~~~ 80 (153)
.....++|+++|++|+|||||++++++..+. .. ..|.......+...+. ++.+|||||+..+... ...
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARR 109 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHH
Confidence 4456789999999999999999999987753 11 2244455566666554 9999999999776543 345
Q ss_pred hhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCH---HHHHHHhCCCcc
Q 031797 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSL 148 (153)
Q Consensus 81 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~---~~~~~~~~~~~~ 148 (153)
+++.+|++++|+|+.... ....++. .+.. .+.|+++|+||+|+.+.... +++++.++++.+
T Consensus 110 ~l~~aD~vllVvD~~~~~---~~~~~l~-~l~~---~~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~ 173 (423)
T 3qq5_A 110 VFYRADCGILVTDSAPTP---YEDDVVN-LFKE---MEIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVL 173 (423)
T ss_dssp HHTSCSEEEEECSSSCCH---HHHHHHH-HHHH---TTCCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCC
T ss_pred HHhcCCEEEEEEeCCChH---HHHHHHH-HHHh---cCCCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEE
Confidence 788999999999983322 2223333 3333 27899999999999876543 333344444443
No 137
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.77 E-value=9.6e-19 Score=131.28 Aligned_cols=114 Identities=16% Similarity=0.216 Sum_probs=82.6
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCcc--ccCC--ceeeEEEEEEEcCEEEEEEEcCCC----------CCchhchH-h
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQ----------DKIRPLWR-H 80 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~d~~g~----------~~~~~~~~-~ 80 (153)
..++|+++|.+|+|||||+|++++.... ...+ |.+.....+...+..+.+|||||+ +.|..... .
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 5689999999999999999999987753 2222 333344566778889999999997 33433322 4
Q ss_pred hhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 81 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
+++.+|++++|+|+++..+++.. .++... .. .+.|+++|+||+|+.+..
T Consensus 254 ~~~~ad~~llv~D~~~~~s~~~~-~~~~~~-~~---~~~~iiiv~NK~Dl~~~~ 302 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEEGIIEQDK-RIAGYA-HE---AGKAVVIVVNKWDAVDKD 302 (436)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHH-HHHHHH-HH---TTCEEEEEEECGGGSCCC
T ss_pred HHHhCCEEEEEEcCCcCCcHHHH-HHHHHH-HH---cCCcEEEEEECccCCCcc
Confidence 67889999999999988777654 333333 32 478999999999997654
No 138
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.76 E-value=3.8e-18 Score=122.40 Aligned_cols=112 Identities=21% Similarity=0.132 Sum_probs=82.1
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc--c--CCceeeEEEEEEEcCEEEEEEEcCCCC-C--------chhchHhh
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT--T--IPTIGFNVETVEYKNISFTVWDVGGQD-K--------IRPLWRHY 81 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~--~--~~t~~~~~~~~~~~~~~~~i~d~~g~~-~--------~~~~~~~~ 81 (153)
.+..+|+++|++|+|||||++++++.++.. . ..|.......+...+..+.+|||||+. . +......+
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 445689999999999999999999987541 1 123333344566788899999999987 2 33334566
Q ss_pred hcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 82 ~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
++.+|++++|+|+++ +.....++...+.. .+.|+++++||+|+..
T Consensus 86 l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 86 IGDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQ 130 (301)
T ss_dssp CCCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCC
T ss_pred HhcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCc
Confidence 788999999999976 33333455555443 4689999999999986
No 139
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.76 E-value=9.7e-19 Score=131.25 Aligned_cols=112 Identities=22% Similarity=0.314 Sum_probs=77.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCccccCC----ceeeEEEEEEEcCEEEEEEEcCCCC--------CchhchHhhhcC
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIP----TIGFNVETVEYKNISFTVWDVGGQD--------KIRPLWRHYFQN 84 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~d~~g~~--------~~~~~~~~~~~~ 84 (153)
..+|+++|.+|||||||+|++.+..+....+ |.+..+....+.+..+.+|||||.+ .+......++++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 3689999999999999999999876542222 3333344555567889999999985 456667778899
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 85 ~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
+|++++|+|+.+..+.. ..++...+.. .+.|+++|+||+|+.+.
T Consensus 83 ad~il~vvD~~~~~~~~--d~~~~~~l~~---~~~pvilv~NK~D~~~~ 126 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAA--DEEVAKILYR---TKKPVVLAVNKLDNTEM 126 (436)
T ss_dssp CSEEEEEEETTTCSCHH--HHHHHHHHTT---CCSCEEEEEECCCC---
T ss_pred CCEEEEEEeCCCCCCHH--HHHHHHHHHH---cCCCEEEEEECccCccc
Confidence 99999999998765543 3455666654 57899999999998753
No 140
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.75 E-value=1.3e-17 Score=120.41 Aligned_cols=86 Identities=27% Similarity=0.539 Sum_probs=75.3
Q ss_pred CceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECC----------CcccHHHHHHHHHHHHcCCCC
Q 031797 47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRDRVVEARDELHRMLNEDEL 116 (153)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~ 116 (153)
+|.|+....+..++.++++||++|+++++..|..++++++++++|+|++ +..++.+...++..+++....
T Consensus 153 ~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~ 232 (327)
T 3ohm_A 153 PTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 232 (327)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred ceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence 4567777778889999999999999999999999999999999999654 677888889999988876655
Q ss_pred CCceEEEEEeCCCccc
Q 031797 117 RDAVLLVFANKQDLPN 132 (153)
Q Consensus 117 ~~~~iivv~~K~Dl~~ 132 (153)
.++|+++++||+|+.+
T Consensus 233 ~~~~iiL~~NK~DL~~ 248 (327)
T 3ohm_A 233 QNSSVILFLNKKDLLE 248 (327)
T ss_dssp TTCEEEEEEECHHHHH
T ss_pred CCceEEEEEECchhhh
Confidence 7899999999999864
No 141
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.75 E-value=1.7e-17 Score=126.86 Aligned_cols=126 Identities=18% Similarity=0.165 Sum_probs=94.4
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC------------------Cccc-------cCCceeeEEEEEEEcCEEEEEEEcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG------------------EIVT-------TIPTIGFNVETVEYKNISFTVWDVG 69 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~------------------~~~~-------~~~t~~~~~~~~~~~~~~~~i~d~~ 69 (153)
.+..+|+++|++|+|||||+++++.. .... ...|.......+.+.+..+.+||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 45689999999999999999999621 1111 1224444556778889999999999
Q ss_pred CCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC---CHHHHHHHhCC
Q 031797 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGL 145 (153)
Q Consensus 70 g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~---~~~~~~~~~~~ 145 (153)
|+..|......+++.+|++++|+|+++..+.... ..|... .. .++|+++|+||+|+.... ..+++.+.++.
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~-~~~~~~-~~---~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~~ 164 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTI-KLMEVC-RL---RHTPIMTFINKMDRDTRPSIELLDEIESILRI 164 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH-HHHHHH-HT---TTCCEEEEEECTTSCCSCHHHHHHHHHHHHCC
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHH-HH---cCCCEEEEEeCCCCccccHHHHHHHHHHhhCC
Confidence 9999999999999999999999999876555443 333333 33 468999999999997543 35566666665
No 142
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.75 E-value=4.5e-18 Score=123.82 Aligned_cols=127 Identities=24% Similarity=0.315 Sum_probs=89.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCcc--cc-CCceeeEEEEEEEcC-EEEEEEEcCCC----CCchhchHhh---hcCCC
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEYKN-ISFTVWDVGGQ----DKIRPLWRHY---FQNTQ 86 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~--~~-~~t~~~~~~~~~~~~-~~~~i~d~~g~----~~~~~~~~~~---~~~~~ 86 (153)
.+|+++|.+|+|||||++++.+.+.. .+ ..|.......+...+ ..+.+||+||. ..+......+ ++.++
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 36899999999999999999887543 11 234444555566654 78999999994 3333333333 45699
Q ss_pred EEEEEEECCC---cccHHHHHHHHHHHHcCC-CCCCceEEEEEeCCCccccC-CHHHHHHHhC
Q 031797 87 GLIFVVDSND---RDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAM-NAAEITDKLG 144 (153)
Q Consensus 87 ~ii~v~d~~~---~~s~~~~~~~~~~~~~~~-~~~~~~iivv~~K~Dl~~~~-~~~~~~~~~~ 144 (153)
++++|+|+++ .+++.....++..+.... ...+.|+++|+||+|+.+.. ..+++++.+.
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~ 301 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLT 301 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCC
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhh
Confidence 9999999988 677877766655554322 13579999999999997643 3556666655
No 143
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.75 E-value=1.5e-17 Score=127.23 Aligned_cols=127 Identities=21% Similarity=0.218 Sum_probs=90.8
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCC--cc----------------c---cCC----ceeeEEEEEEEcCEEEEEEEcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGE--IV----------------T---TIP----TIGFNVETVEYKNISFTVWDVG 69 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~--~~----------------~---~~~----t~~~~~~~~~~~~~~~~i~d~~ 69 (153)
.+.++|+++|++|+|||||+++++... +. . ... |.......+...+..+.+||+|
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 457899999999999999999998631 10 0 000 1122234567788999999999
Q ss_pred CCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCC---HHHHHHHhCCC
Q 031797 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLH 146 (153)
Q Consensus 70 g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~---~~~~~~~~~~~ 146 (153)
|+..|......+++.+|++++|+|+++.... ....+...... .++|+++++||+|+..... .+++.+.++..
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~--~t~~~~~~~~~---~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~~ 165 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVED--RTRKLMEVTRL---RDTPILTFMNKLDRDIRDPMELLDEVENELKIG 165 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCH--HHHHHHHHHTT---TTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCE
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchH--HHHHHHHHHHH---cCCCEEEEEcCcCCccccHHHHHHHHHHHhCCC
Confidence 9999988888899999999999999865332 22222333333 4789999999999976543 56666666653
No 144
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.75 E-value=6e-18 Score=128.05 Aligned_cols=120 Identities=25% Similarity=0.355 Sum_probs=89.1
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCc--cccC--CceeeEEEEEEEcCEEEEEEEcCCCC-Cchh--------chHhhh
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEI--VTTI--PTIGFNVETVEYKNISFTVWDVGGQD-KIRP--------LWRHYF 82 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~--~~~~--~t~~~~~~~~~~~~~~~~i~d~~g~~-~~~~--------~~~~~~ 82 (153)
..++|+++|.+|+|||||+|++.+.+. .... .|.......+...+..+.+|||||.. .+.. ....++
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 358999999999999999999998753 2332 34455556777889999999999987 5532 234578
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHHHHH
Q 031797 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDK 142 (153)
Q Consensus 83 ~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~~~~ 142 (153)
+.+|++++|+|++++.++... ..+ ..+ .+.|+++|+||+|+.+....+++.+.
T Consensus 322 ~~aD~vl~VvD~s~~~s~~~~-~il-~~l-----~~~piivV~NK~DL~~~~~~~~~~~~ 374 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLDEEDR-KIL-ERI-----KNKRYLVVINKVDVVEKINEEEIKNK 374 (482)
T ss_dssp HHCSEEEEEEETTSCCCHHHH-HHH-HHH-----TTSSEEEEEEECSSCCCCCHHHHHHH
T ss_pred hcccEEEEEecCCCCCCHHHH-HHH-HHh-----cCCCEEEEEECcccccccCHHHHHHH
Confidence 899999999999988777543 222 333 36799999999999765454555443
No 145
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.75 E-value=1.2e-17 Score=121.92 Aligned_cols=84 Identities=31% Similarity=0.568 Sum_probs=73.9
Q ss_pred ceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCC----------cccHHHHHHHHHHHHcCCCCC
Q 031797 48 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RDRVVEARDELHRMLNEDELR 117 (153)
Q Consensus 48 t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~ 117 (153)
|.|+....+..++..+.+||++|++.++..|..++++++++|||+|+++ ..++.+...++..+.+.....
T Consensus 180 T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~ 259 (353)
T 1cip_A 180 TTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFT 259 (353)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred eeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcccc
Confidence 4556666677789999999999999999999999999999999999998 567999999998888765456
Q ss_pred CceEEEEEeCCCcc
Q 031797 118 DAVLLVFANKQDLP 131 (153)
Q Consensus 118 ~~~iivv~~K~Dl~ 131 (153)
++|+++++||+|+.
T Consensus 260 ~~piiLv~NK~DL~ 273 (353)
T 1cip_A 260 DTSIILFLNKKDLF 273 (353)
T ss_dssp TSEEEEEEECHHHH
T ss_pred CCcEEEEEECcCch
Confidence 89999999999995
No 146
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.75 E-value=5.5e-17 Score=118.90 Aligned_cols=118 Identities=19% Similarity=0.205 Sum_probs=86.9
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc---cCCceeeEEEEEEEcCEEEEEEEcCCCCCch---------hchHhhh
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGFNVETVEYKNISFTVWDVGGQDKIR---------PLWRHYF 82 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~---------~~~~~~~ 82 (153)
...++++++|++|+|||||++++.+..... ...|.......+...+..+.+||+||..... .......
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 467899999999999999999999876431 2335555556666778899999999975431 1122344
Q ss_pred cCCCEEEEEEECCCcc--cHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 83 QNTQGLIFVVDSNDRD--RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 83 ~~~~~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
..+|++++|+|+++.. ++.....++..+.... .+.|+++|+||+|+.+..
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~ 296 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEE 296 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHH
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChH
Confidence 5799999999998776 6666666666554422 268999999999997654
No 147
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.75 E-value=3.2e-17 Score=122.94 Aligned_cols=123 Identities=19% Similarity=0.124 Sum_probs=83.9
Q ss_pred HHHHhhcccccccEEEEEcCCCCcHHHHHHHHhcCC--ccc-----------c-----------------------CCce
Q 031797 6 TKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGE--IVT-----------T-----------------------IPTI 49 (153)
Q Consensus 6 ~~~~~~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~--~~~-----------~-----------------------~~t~ 49 (153)
..++.+......++|+++|+.++|||||+++|++.. +.. . ..|.
T Consensus 13 ~~~l~~~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi 92 (434)
T 1zun_B 13 LAYLGQHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITI 92 (434)
T ss_dssp ---CCSTTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCC
T ss_pred HHHHhhcccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEE
Confidence 334444444556999999999999999999997643 100 0 0122
Q ss_pred eeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCC
Q 031797 50 GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD 129 (153)
Q Consensus 50 ~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~D 129 (153)
...+..+...+.++.+||+||++.|...+...++.+|++++|+|+++.... ....++... ... ...|+++++||+|
T Consensus 93 ~~~~~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~-~~~--~~~~iIvviNK~D 168 (434)
T 1zun_B 93 DVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIA-SLL--GIKHIVVAINKMD 168 (434)
T ss_dssp CCEEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHH-HHT--TCCEEEEEEECTT
T ss_pred EeeeeEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHH-HHc--CCCeEEEEEEcCc
Confidence 223344556778999999999999988888889999999999999875432 222333222 221 1236999999999
Q ss_pred ccc
Q 031797 130 LPN 132 (153)
Q Consensus 130 l~~ 132 (153)
+.+
T Consensus 169 l~~ 171 (434)
T 1zun_B 169 LNG 171 (434)
T ss_dssp TTT
T ss_pred CCc
Confidence 976
No 148
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.75 E-value=6.2e-18 Score=126.87 Aligned_cols=115 Identities=22% Similarity=0.217 Sum_probs=80.9
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC--Cccc--------------------------------cCCceeeEEEEEEEcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG--EIVT--------------------------------TIPTIGFNVETVEYKN 60 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~--~~~~--------------------------------~~~t~~~~~~~~~~~~ 60 (153)
...++|+++|+.++|||||+++|++. .+.. ...|.......+...+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 45689999999999999999999764 2210 1124444445567778
Q ss_pred EEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHH------HHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD------ELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~------~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
..+.+||+||++.|...+...++.+|++++|+|+++ .+++.... ......... ...|+++++||+|+.+
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~--~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDLTE 158 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGGSS
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc--CCCeEEEEEEcccCCC
Confidence 899999999999999888899999999999999987 66653221 111111111 1235899999999986
No 149
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.74 E-value=1.1e-17 Score=126.99 Aligned_cols=116 Identities=17% Similarity=0.149 Sum_probs=82.1
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCC--ccc--------------------------------cCCceeeEEEEEEEcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGE--IVT--------------------------------TIPTIGFNVETVEYKN 60 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~--~~~--------------------------------~~~t~~~~~~~~~~~~ 60 (153)
...++|+++|.+++|||||+++|++.. +.. ...|.......+...+
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 456999999999999999999997541 000 0123444455667788
Q ss_pred EEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcccHHH-----HHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVE-----ARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
..+.+||+||++.|...+...++.+|++++|+|+++..+... ............ ...|+++++||+|+.+
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~ 185 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVD 185 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGT
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCccc
Confidence 999999999999999999999999999999999987543221 122222222221 2246999999999986
No 150
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.74 E-value=8.7e-18 Score=126.14 Aligned_cols=114 Identities=19% Similarity=0.233 Sum_probs=82.3
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCC--cc--------------------------------ccCCceeeEEEEEEEcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGE--IV--------------------------------TTIPTIGFNVETVEYKN 60 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~--~~--------------------------------~~~~t~~~~~~~~~~~~ 60 (153)
...++|+++|++++|||||+++|+... +. ....|.......+...+
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 456999999999999999999996531 00 01124444555677788
Q ss_pred EEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCccc---HH---HHHHHHHHHHcCCCCCCce-EEEEEeCCCccc
Q 031797 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR---VV---EARDELHRMLNEDELRDAV-LLVFANKQDLPN 132 (153)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~-iivv~~K~Dl~~ 132 (153)
..+.+||+|||+.|...+...++.+|++++|+|+++... +. .....+... .. .++| +++++||+|+.+
T Consensus 95 ~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~-~~---~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 95 KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLA-KT---AGVKHLIVLINKMDDPT 169 (439)
T ss_pred eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHH-HH---cCCCeEEEEeecCCCcc
Confidence 899999999999999888889999999999999986421 11 122222222 22 3456 999999999964
No 151
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.73 E-value=4.9e-18 Score=131.86 Aligned_cols=116 Identities=17% Similarity=0.154 Sum_probs=83.1
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcc--c--------------------------------cCCceeeEEEEEEEcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--T--------------------------------TIPTIGFNVETVEYKN 60 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~--~--------------------------------~~~t~~~~~~~~~~~~ 60 (153)
...++|+++|++++|||||+++|++.... . ...|.......+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 45689999999999999999999865321 0 1124444556677788
Q ss_pred EEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcc---cH--HHHHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RV--VEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~---s~--~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
..+.+||+||++.|...+...++.+|++++|+|+++.. ++ .............. ...|+++|+||+|+.+
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l--gi~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVD 319 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT--TCCEEEEEEECTTTTT
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc--CCCeEEEEEecccccc
Confidence 99999999999999988889999999999999997521 00 01111112222221 2246999999999986
No 152
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.73 E-value=3e-17 Score=122.12 Aligned_cols=113 Identities=21% Similarity=0.203 Sum_probs=84.2
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC--------Cccc------------cCCceeeEEEEEEEcCEEEEEEEcCCCCCc
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG--------EIVT------------TIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~--------~~~~------------~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~ 74 (153)
...++|+++|++++|||||++++.+. .+.. ...|.......+...+..+.+||+||++.|
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 45689999999999999999999873 1111 111333344455667789999999999999
Q ss_pred hhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCce-EEEEEeCCCccc
Q 031797 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPN 132 (153)
Q Consensus 75 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~~K~Dl~~ 132 (153)
...+...++.+|++++|+|+++.... ....++... .. .++| +++++||+|+.+
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~-~~---~~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPMP-QTREHILLA-RQ---VGVPYIVVFMNKVDMVD 142 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHH-HH---TTCCCEEEEEECGGGCC
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHH-HH---cCCCEEEEEEECccccC
Confidence 88888889999999999999875433 334444333 22 3577 899999999985
No 153
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.73 E-value=1.7e-18 Score=130.64 Aligned_cols=116 Identities=22% Similarity=0.297 Sum_probs=79.9
Q ss_pred ccccccEEEEEcCCCCcHHHHHHHHhcCCccccCC----ceeeEEEEEEEcCEEEEEEEcCC--------CCCchhchHh
Q 031797 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP----TIGFNVETVEYKNISFTVWDVGG--------QDKIRPLWRH 80 (153)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~d~~g--------~~~~~~~~~~ 80 (153)
......+|+++|.+|+|||||+|++.+.++..... |...........+..+.+||||| ++.+......
T Consensus 19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~ 98 (456)
T 4dcu_A 19 SHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEI 98 (456)
T ss_dssp ----CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHH
T ss_pred hhcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHh
Confidence 33556799999999999999999999876542222 22333444455678999999999 5556667788
Q ss_pred hhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 81 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
+++++|++++|+|+.+. +.....++...+.. .+.|+++|+||+|+.+.
T Consensus 99 ~~~~ad~il~VvD~~~~--~~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~ 146 (456)
T 4dcu_A 99 AMDEADVIIFMVNGREG--VTAADEEVAKILYR---TKKPVVLAVNKLDNTEM 146 (456)
T ss_dssp HHHHCSEEEEEEESSSC--SCHHHHHHHHHHTT---CCSCEEEEEECC-----
T ss_pred hHhhCCEEEEEEeCCCC--CChHHHHHHHHHHH---cCCCEEEEEECccchhh
Confidence 88999999999998653 33445566666665 57899999999998653
No 154
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.73 E-value=4.8e-17 Score=115.24 Aligned_cols=115 Identities=18% Similarity=0.297 Sum_probs=73.9
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCccc--c-------CCceeeEEEEEEE----cCEEEEEEEcCCCCC-------ch
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT--T-------IPTIGFNVETVEY----KNISFTVWDVGGQDK-------IR 75 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~--~-------~~t~~~~~~~~~~----~~~~~~i~d~~g~~~-------~~ 75 (153)
..++|+++|.+|+|||||+|++++..... . .+|.+........ ...++.+|||||... +.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 46899999999999999999987765431 1 4455555544443 225999999999732 32
Q ss_pred hch-------Hhhhc-------------CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCC
Q 031797 76 PLW-------RHYFQ-------------NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (153)
Q Consensus 76 ~~~-------~~~~~-------------~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~ 135 (153)
... ..+++ .+|+++++++.+... +......+...+.. ++|+++|+||+|+....+
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~-~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~e 161 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG-LKPLDIEFMKRLHE----KVNIIPLIAKADTLTPEE 161 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSS-CCHHHHHHHHHHTT----TSCEEEEESSGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCC-CCHHHHHHHHHHhc----cCCEEEEEeccCCCCHHH
Confidence 222 33333 378999998766422 22333344444443 689999999999975543
No 155
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.73 E-value=8.6e-18 Score=126.76 Aligned_cols=114 Identities=17% Similarity=0.268 Sum_probs=82.5
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcc--ccCC--ceeeEEEEEEEcCEEEEEEEcCC----------CCCchhchH-
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGG----------QDKIRPLWR- 79 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~d~~g----------~~~~~~~~~- 79 (153)
...++++++|.+|+|||||++++.+.... ...+ |.......+...+.++.+||||| ++.|.....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 45689999999999999999999976532 2222 33333456777888999999999 566655443
Q ss_pred hhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 80 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
.+++.+|++++|+|+++..+ ....++...+.. .+.|+++|+||+|+.+.
T Consensus 273 ~~~~~ad~~llviD~~~~~~--~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~ 321 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGII--EQDKRIAGYAHE---AGKAVVIVVNKWDAVDK 321 (456)
T ss_dssp HHHHHCSEEEEEEETTTCCC--HHHHHHHHHHHH---TTCEEEEEEECGGGSCC
T ss_pred HHHhhCCEEEEEEeCCCCcC--HHHHHHHHHHHH---cCCCEEEEEEChhcCCC
Confidence 47789999999999986433 333444444443 46899999999999754
No 156
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.72 E-value=1.8e-17 Score=125.70 Aligned_cols=114 Identities=18% Similarity=0.175 Sum_probs=81.8
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCC----cc----cc--CCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGE----IV----TT--IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN 84 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~----~~----~~--~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~ 84 (153)
.+.++|+++|+.++|||||++++.+.. .. +. ..|....+..+...+..+.+||+||++.|...+...++.
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~ 96 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI 96 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhh
Confidence 457899999999999999999998876 21 11 124444455667788999999999999998888888999
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 85 ~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
+|++++|+|+++.... ...+.+. .+.. .++|+++++||+|+.++
T Consensus 97 aD~~ilVvda~~g~~~-qt~e~l~-~~~~---~~ip~IvviNK~Dl~~~ 140 (482)
T 1wb1_A 97 IDLALIVVDAKEGPKT-QTGEHML-ILDH---FNIPIIVVITKSDNAGT 140 (482)
T ss_dssp CCEEEEEEETTTCSCH-HHHHHHH-HHHH---TTCCBCEEEECTTSSCH
T ss_pred CCEEEEEEecCCCccH-HHHHHHH-HHHH---cCCCEEEEEECCCcccc
Confidence 9999999999862211 1111121 2222 35788999999999864
No 157
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.72 E-value=7.9e-17 Score=126.74 Aligned_cols=127 Identities=22% Similarity=0.158 Sum_probs=92.4
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcC--Ccc-------------------ccCCceeeEEEEEEEcCEEEEEEEcCCCC
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLG--EIV-------------------TTIPTIGFNVETVEYKNISFTVWDVGGQD 72 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~--~~~-------------------~~~~t~~~~~~~~~~~~~~~~i~d~~g~~ 72 (153)
..+..+|+++|++|+|||||+++++.. .+. ....|.......+...+..+.+|||||+.
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 88 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV 88 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSST
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc
Confidence 356799999999999999999999831 110 11234444455677788999999999999
Q ss_pred CchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC---CHHHHHHHhCC
Q 031797 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGL 145 (153)
Q Consensus 73 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~---~~~~~~~~~~~ 145 (153)
.|...+..+++.+|++++|+|+++..+...... |..... .++|+++++||+|+.... ..+++.+.++.
T Consensus 89 df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~-~~~~~~----~~~p~ivviNKiD~~~~~~~~~~~~l~~~l~~ 159 (691)
T 1dar_A 89 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETV-WRQAEK----YKVPRIAFANKMDKTGADLWLVIRTMQERLGA 159 (691)
T ss_dssp TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH-HHHHHH----TTCCEEEEEECTTSTTCCHHHHHHHHHHTTCC
T ss_pred chHHHHHHHHHHCCEEEEEEECCCCcchhhHHH-HHHHHH----cCCCEEEEEECCCcccCCHHHHHHHHHHHhCC
Confidence 999889999999999999999988766654433 333332 378999999999998654 34455555554
No 158
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.72 E-value=5.7e-17 Score=122.30 Aligned_cols=114 Identities=18% Similarity=0.154 Sum_probs=82.8
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC--Cccc--------------------------------cCCceeeEEEEEEEcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG--EIVT--------------------------------TIPTIGFNVETVEYKN 60 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~--~~~~--------------------------------~~~t~~~~~~~~~~~~ 60 (153)
...++|+++|++++|||||+++|++. .+.. ...|.......+...+
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 34689999999999999999999763 1110 1234444555677788
Q ss_pred EEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcc---cHH---HHHHHHHHHHcCCCCCCce-EEEEEeCCCccc
Q 031797 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RVV---EARDELHRMLNEDELRDAV-LLVFANKQDLPN 132 (153)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~~-iivv~~K~Dl~~ 132 (153)
..+.+||+|||+.|...+...++.+|++++|+|+++.. +|. .....+.. ... .++| +++++||+|+.+
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~-~~~---~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALL-AFT---LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHH-HHH---TTCCEEEEEEECGGGGT
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHH-HHH---cCCCeEEEEEEcccccc
Confidence 99999999999999988888999999999999997532 110 22222222 222 2454 999999999974
No 159
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.72 E-value=1.1e-16 Score=119.22 Aligned_cols=117 Identities=19% Similarity=0.151 Sum_probs=77.8
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcc---c-cCC--ceeeEEEEEEE---------------c--------CEEEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV---T-TIP--TIGFNVETVEY---------------K--------NISFTV 65 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~---~-~~~--t~~~~~~~~~~---------------~--------~~~~~i 65 (153)
...++|+++|+.++|||||++++.+.... . ..+ |....+..... . ...+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 45799999999999999999999854322 1 112 44333322211 1 268999
Q ss_pred EEcCCCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 66 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 66 ~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
||+|||+.|...+...+..+|++++|+|+++........+.+..+ ... ...|+++++||+|+.+..
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~~l--~~~~iivv~NK~Dl~~~~ 151 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL-EIL--GIDKIIIVQNKIDLVDEK 151 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH-HHT--TCCCEEEEEECTTSSCTT
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH-HHc--CCCeEEEEEEccCCCCHH
Confidence 999999998887777788899999999998542111222222211 111 224799999999997653
No 160
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.72 E-value=1.8e-17 Score=124.97 Aligned_cols=112 Identities=19% Similarity=0.275 Sum_probs=74.5
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCc--cccCC--ceeeEEEEEEEcCEEEEEEEcCCCCCchhch--------Hhhh
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLW--------RHYF 82 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~--------~~~~ 82 (153)
...++|+++|++|+|||||+|++.+... ....+ |.......+...+..+.+|||||...+.... ..++
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 3568999999999999999999988643 22223 3334445677788999999999976554332 2357
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 83 ~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
+.+|++++|+|++++.+... ..+...+. ..|+++|+||+|+.+.
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~--~~i~~~l~-----~~piivV~NK~Dl~~~ 345 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD--QEIYEQVK-----HRPLILVMNKIDLVEK 345 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH--HHHHHHHT-----TSCEEEEEECTTSSCG
T ss_pred hcCCEEEEEeccCCCCCHHH--HHHHHhcc-----CCcEEEEEECCCCCcc
Confidence 88999999999988766543 23333332 3699999999999754
No 161
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.71 E-value=2.2e-17 Score=121.45 Aligned_cols=103 Identities=6% Similarity=0.039 Sum_probs=79.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcc
Q 031797 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 98 (153)
+|+++|++++|||||+++++ ....|.+.....+...+..+.+||+||++.|.......++.+|++++|+| + ..
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-----~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~-~g 95 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-----KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-P-QG 95 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-----EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T-TC
T ss_pred EEEEECCCCCCHHHHHHHHH-----hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-C-CC
Confidence 99999999999999999998 22344455556666678899999999999998888888899999999999 4 34
Q ss_pred cHHHHHHHHHHHHcCCCCCCceE-EEEEe-CCCcccc
Q 031797 99 RVVEARDELHRMLNEDELRDAVL-LVFAN-KQDLPNA 133 (153)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~i-ivv~~-K~Dl~~~ 133 (153)
.......++..... .++|. ++++| |+|+ +.
T Consensus 96 ~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~ 127 (370)
T 2elf_A 96 LDAHTGECIIALDL----LGFKHGIIALTRSDST-HM 127 (370)
T ss_dssp CCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CH
T ss_pred CcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CH
Confidence 44444444443322 24666 88888 9999 54
No 162
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.71 E-value=2.6e-17 Score=122.15 Aligned_cols=112 Identities=19% Similarity=0.129 Sum_probs=81.2
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCC-------ccc------------cCCceeeEEEEEEEcCEEEEEEEcCCCCCchh
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGE-------IVT------------TIPTIGFNVETVEYKNISFTVWDVGGQDKIRP 76 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~-------~~~------------~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~ 76 (153)
..++|+++|+.++|||||+++|.+.. +.. ...|.+.....+...+..+.+||+||++.|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 35899999999999999999998631 110 11133333344555678999999999999988
Q ss_pred chHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCce-EEEEEeCCCccc
Q 031797 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPN 132 (153)
Q Consensus 77 ~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~~K~Dl~~ 132 (153)
.+...++.+|++++|+|+++....+ ....+. .+.. .++| +++++||+|+.+
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~q-t~e~l~-~~~~---~~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQ-TREHLL-LARQ---IGVEHVVVYVNKADAVQ 133 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHH-HHHHHH-HHHH---TTCCCEEEEEECGGGCS
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHH-HHHHHH-HHHH---cCCCeEEEEEECcccCC
Confidence 8888899999999999998754332 233332 2222 3577 789999999975
No 163
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.71 E-value=5.2e-17 Score=125.60 Aligned_cols=126 Identities=21% Similarity=0.226 Sum_probs=84.6
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCC--cc---------cc---CC----ceeeEEEEEEEc-----CEEEEEEEcCCCC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGE--IV---------TT---IP----TIGFNVETVEYK-----NISFTVWDVGGQD 72 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~--~~---------~~---~~----t~~~~~~~~~~~-----~~~~~i~d~~g~~ 72 (153)
+..+++++|+.++|||||+++++... +. .. .. |.......+.+. ...+++||||||.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 46799999999999999999997621 11 00 01 111222334333 3789999999999
Q ss_pred CchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC---CHHHHHHHhCCC
Q 031797 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLH 146 (153)
Q Consensus 73 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~---~~~~~~~~~~~~ 146 (153)
.|...+...++.+|++++|+|+++..+.+....|... .. .++|+++++||+|+.+.. ..+++++.+++.
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~-~~----~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~ 154 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTA-ME----MDLEVVPVLNKIDLPAADPERVAEEIEDIVGID 154 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHH-HH----TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHH-HH----CCCCEEEeeeccCcccccHHHHHHHHHHHhCCC
Confidence 9998889999999999999999877666554444333 22 368999999999998643 245566666653
No 164
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.71 E-value=1.3e-16 Score=123.38 Aligned_cols=126 Identities=20% Similarity=0.259 Sum_probs=86.5
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC--Cccc------cC----------CceeeEEEEEEEc-----CEEEEEEEcCCC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG--EIVT------TI----------PTIGFNVETVEYK-----NISFTVWDVGGQ 71 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~--~~~~------~~----------~t~~~~~~~~~~~-----~~~~~i~d~~g~ 71 (153)
.+..+++++|+.++|||||+++++.. .+.. .. .|.......+.+. ...+.+|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 45679999999999999999999752 1110 00 0111112233332 378999999999
Q ss_pred CCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC---CHHHHHHHhCC
Q 031797 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGL 145 (153)
Q Consensus 72 ~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~---~~~~~~~~~~~ 145 (153)
..|...+...++.+|++++|+|+++..+.+....|.... . .++|+++++||+|+.+.. ..+++++.+++
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~-~----~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~ 155 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV-E----QDLVIIPVINKIDLPSADVDRVKKQIEEVLGL 155 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH-H----TTCEEEEEEECTTSTTCCHHHHHHHHHHTSCC
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH-H----CCCCEEEEEeccCccccCHHHHHHHHHHhhCC
Confidence 999888888999999999999999877766554443332 2 468999999999997653 23455555554
No 165
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.71 E-value=1.1e-16 Score=121.11 Aligned_cols=115 Identities=17% Similarity=0.188 Sum_probs=69.2
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcC--Ccc--------------------------------ccCCceeeEEEEEEEc
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLG--EIV--------------------------------TTIPTIGFNVETVEYK 59 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~--~~~--------------------------------~~~~t~~~~~~~~~~~ 59 (153)
....++|+++|+.++|||||+++|+.. .+. ....|.+.....+...
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~ 119 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 119 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence 456789999999999999999999642 111 0112333334456667
Q ss_pred CEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcc---cHH---HHHHHHHHHHcCCCCCCce-EEEEEeCCCccc
Q 031797 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RVV---EARDELHRMLNEDELRDAV-LLVFANKQDLPN 132 (153)
Q Consensus 60 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~~-iivv~~K~Dl~~ 132 (153)
+..+.+||+|||+.|...+...++.+|++++|+|+++.. +|. .....+... .. .++| +++++||+|+.+
T Consensus 120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~-~~---~~vp~iivviNK~Dl~~ 195 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLA-RT---QGINHLVVVINKMDEPS 195 (467)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH-HH---TTCSSEEEEEECTTSTT
T ss_pred CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHH-HH---cCCCEEEEEEECccCCC
Confidence 889999999999999888888899999999999998641 221 111222211 11 3566 999999999964
No 166
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.70 E-value=2.3e-17 Score=127.62 Aligned_cols=110 Identities=18% Similarity=0.160 Sum_probs=79.5
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccccCC-----ceeeEEEEEE----------------EcCEEEEEEEcCCCCC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIGFNVETVE----------------YKNISFTVWDVGGQDK 73 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~-----t~~~~~~~~~----------------~~~~~~~i~d~~g~~~ 73 (153)
.+..+|+++|++++|||||++++++..+....+ +.+....... .....+.+||||||+.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 467899999999999999999998765433221 2222222111 1112699999999999
Q ss_pred chhchHhhhcCCCEEEEEEECCC---cccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 74 IRPLWRHYFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 74 ~~~~~~~~~~~~~~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
|...+...++.+|++++|+|+++ ++++..+. .+ .. .++|+++++||+|+.+
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l-~~---~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALN----IL-RM---YRTPFVVAANKIDRIH 136 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HH-HH---TTCCEEEEEECGGGST
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HH-HH---cCCeEEEEeccccccc
Confidence 99888888899999999999987 44443322 22 22 4689999999999964
No 167
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.70 E-value=2.9e-17 Score=126.25 Aligned_cols=125 Identities=19% Similarity=0.247 Sum_probs=83.7
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcc----ccCCceeeEEEE-----------------------------------
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVET----------------------------------- 55 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~----~~~~t~~~~~~~----------------------------------- 55 (153)
....+|+|+|.+|+|||||+|++++.++. ...+++......
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 35689999999999999999999998752 222222111000
Q ss_pred ---EEEcC---EEEEEEEcCCCCC-----------chhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCC
Q 031797 56 ---VEYKN---ISFTVWDVGGQDK-----------IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD 118 (153)
Q Consensus 56 ---~~~~~---~~~~i~d~~g~~~-----------~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 118 (153)
+.... ..+.+|||||... +......+++.+|++++|+|+++.........++.. +.. .+
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~-l~~---~~ 218 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGA-LRG---HE 218 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHH-TTT---CG
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHH-HHh---cC
Confidence 00000 3689999999764 445566778899999999999875444444444433 333 46
Q ss_pred ceEEEEEeCCCccccCCHHHHHHHh
Q 031797 119 AVLLVFANKQDLPNAMNAAEITDKL 143 (153)
Q Consensus 119 ~~iivv~~K~Dl~~~~~~~~~~~~~ 143 (153)
.|+++|+||+|+.+..+..++.+.+
T Consensus 219 ~pvilVlNK~Dl~~~~el~~~~~~l 243 (550)
T 2qpt_A 219 DKIRVVLNKADMVETQQLMRVYGAL 243 (550)
T ss_dssp GGEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCccCHHHHHHHHHHh
Confidence 8899999999998765555554443
No 168
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.70 E-value=8.1e-17 Score=119.97 Aligned_cols=118 Identities=20% Similarity=0.159 Sum_probs=78.9
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCcc----ccCC--ceeeEEEEEEE---------------c--------CEEEE
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV----TTIP--TIGFNVETVEY---------------K--------NISFT 64 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~----~~~~--t~~~~~~~~~~---------------~--------~~~~~ 64 (153)
....++|+++|+.++|||||++++.+.... +... |....+..... . ...+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 455699999999999999999999854321 1112 44433332222 0 26899
Q ss_pred EEEcCCCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 65 i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
+||+|||+.|...+...+..+|++++|+|+++..........+..+ ... ...|+++++||+|+.+..
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~~~--~~~~iivviNK~Dl~~~~ 153 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL-QII--GQKNIIIAQNKIELVDKE 153 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH-HHH--TCCCEEEEEECGGGSCHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc--CCCcEEEEEECccCCCHH
Confidence 9999999998877777788899999999998532111112211111 111 125799999999998643
No 169
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.70 E-value=1.9e-18 Score=131.94 Aligned_cols=114 Identities=20% Similarity=0.204 Sum_probs=84.2
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcccc-CC--ceeeEEEEEEE-cCEEEEEEEcCCCCCchhchHhhhcCCCEEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IP--TIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~--t~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 90 (153)
++..+|+++|++++|||||+++|.+..+... .+ |.......+.. .+.++.+||||||+.|...+...++.+|++++
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 4578899999999999999999987665422 22 22222233333 45689999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
|+|+++....+. ...+.... . .++|+++++||+|+.+.
T Consensus 82 VVDa~dg~~~qt-~e~l~~~~-~---~~vPiIVViNKiDl~~~ 119 (537)
T 3izy_P 82 VVAADDGVMKQT-VESIQHAK-D---AHVPIVLAINKCDKAEA 119 (537)
T ss_dssp ECBSSSCCCHHH-HHHHHHHH-T---TTCCEEECCBSGGGTTT
T ss_pred EEECCCCccHHH-HHHHHHHH-H---cCCcEEEEEeccccccc
Confidence 999987544433 33333332 2 46899999999999753
No 170
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.70 E-value=3.2e-16 Score=123.37 Aligned_cols=127 Identities=20% Similarity=0.179 Sum_probs=91.9
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhc--CCcc------------c-------cCCceeeEEEEEEEcCEEEEEEEcCCCC
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKL--GEIV------------T-------TIPTIGFNVETVEYKNISFTVWDVGGQD 72 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~--~~~~------------~-------~~~t~~~~~~~~~~~~~~~~i~d~~g~~ 72 (153)
..+..+|+++|++|+|||||+++++. ..+. . ...|.......+.+.+..+.+|||||+.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence 45678999999999999999999984 2211 0 1123333345567788999999999999
Q ss_pred CchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC---CHHHHHHHhCC
Q 031797 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGL 145 (153)
Q Consensus 73 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~---~~~~~~~~~~~ 145 (153)
.|......+++.+|++++|+|+++..+..... .|..... .+.|+++|+||+|+.... ..+++.+.++.
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~-~~~~~~~----~~~p~ilviNK~Dl~~~~~~~~~~~l~~~l~~ 157 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTET-VWRQATT----YGVPRIVFVNKMDKLGANFEYSVSTLHDRLQA 157 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHH-HHHHHHH----TTCCEEEEEECTTSTTCCHHHHHHHHHHHHCC
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHH-HHHHHHH----cCCCEEEEEECCCccccchHHHHHHHHHHhCC
Confidence 99888888999999999999998766664433 3333332 368999999999998653 24455555543
No 171
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.69 E-value=7.2e-17 Score=117.90 Aligned_cols=74 Identities=24% Similarity=0.538 Sum_probs=64.5
Q ss_pred cCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECC----------CcccHHHHHHHHHHHHcCCCCCCceEEEEEeCC
Q 031797 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128 (153)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~ 128 (153)
+...+.+||++|++.++..+..++++++++++|+|++ +..++.+...++..+.+....+++|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 3578999999999999999999999999999999998 788999999999888776444689999999999
Q ss_pred Cccc
Q 031797 129 DLPN 132 (153)
Q Consensus 129 Dl~~ 132 (153)
|+.+
T Consensus 261 DL~~ 264 (354)
T 2xtz_A 261 DIFE 264 (354)
T ss_dssp HHHH
T ss_pred chhh
Confidence 9853
No 172
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.69 E-value=1.6e-16 Score=116.59 Aligned_cols=116 Identities=21% Similarity=0.171 Sum_probs=78.3
Q ss_pred ccE-EEEEcCCCCcHHHHHHHHhcCCccc---cCCceeeEEEEEEEcCEEEEEEEcCCCCC---------chhchHhhhc
Q 031797 17 EMR-ILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGFNVETVEYKNISFTVWDVGGQDK---------IRPLWRHYFQ 83 (153)
Q Consensus 17 ~~~-i~i~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~d~~g~~~---------~~~~~~~~~~ 83 (153)
.++ ++++|++|+|||||++++.+..... ..+|.+.....+...+..+.+||++|... +.... ..++
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~ 256 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAK 256 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHH-HGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHH-HHHH
Confidence 455 9999999999999999999876531 24455566677888888999999999622 22222 2467
Q ss_pred CCCEEEEEEECCCcc--cHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 84 NTQGLIFVVDSNDRD--RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 84 ~~~~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
.+|.+++|+|++++. .... ...+...+......+.|+++|+||+|+.+..
T Consensus 257 ~aD~il~VvD~s~~~~~~~~~-~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~ 308 (364)
T 2qtf_A 257 YSDALILVIDSTFSENLLIET-LQSSFEILREIGVSGKPILVTLNKIDKINGD 308 (364)
T ss_dssp GSSEEEEEEETTSCHHHHHHH-HHHHHHHHHHHTCCSCCEEEEEECGGGCCSC
T ss_pred hCCEEEEEEECCCCcchHHHH-HHHHHHHHHHhCcCCCCEEEEEECCCCCCch
Confidence 899999999998765 3332 2223333333223568999999999997643
No 173
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.68 E-value=3e-16 Score=117.81 Aligned_cols=113 Identities=18% Similarity=0.240 Sum_probs=78.1
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCcc--ccCC--ceeeEEEEEEEcCEEEEEEEcCCCCCchhc------------hH
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL------------WR 79 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~------------~~ 79 (153)
..++++++|++|+|||||++++.+.... ...+ |.......+...+..+.+||++|....... ..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 4589999999999999999999987642 2222 333344567778889999999997433211 13
Q ss_pred hhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 80 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
.+++.+|++++|+|+++..+... ..+...+.. .+.|+++++||+|+.+.
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~--~~i~~~l~~---~~~~~ilv~NK~Dl~~~ 307 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQD--QRMAGLMER---RGRASVVVFNKWDLVVH 307 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH---TTCEEEEEEECGGGSTT
T ss_pred HHHhhCCEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCCc
Confidence 45678999999999987655543 223333333 46899999999999754
No 174
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.68 E-value=1e-17 Score=126.98 Aligned_cols=113 Identities=19% Similarity=0.220 Sum_probs=81.7
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcccc-C--CceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-I--PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~--~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 91 (153)
++..+|+++|+.++|||||++++.+..+... . .|.......+...+..+.+||||||+.|...+...++.+|++++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 4678999999999999999999987544321 1 122222333444667899999999999998888889999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
+|+++.... .....+..... .++|+++++||+|+.+
T Consensus 82 Vda~~g~~~-qT~e~l~~~~~----~~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 82 VAADDGVMP-QTIEAIQHAKA----AQVPVVVAVNKIDKPE 117 (501)
T ss_dssp EETTTBSCT-TTHHHHHHHHH----TTCCEEEEEECSSSST
T ss_pred eecccCccH-HHHHHHHHHHh----cCceEEEEEEeccccc
Confidence 999763211 11122222211 4689999999999975
No 175
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.68 E-value=3.1e-16 Score=125.67 Aligned_cols=113 Identities=19% Similarity=0.124 Sum_probs=84.2
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCC------------cccc-------CCceeeEEEEEEEc----------------
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGE------------IVTT-------IPTIGFNVETVEYK---------------- 59 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~------------~~~~-------~~t~~~~~~~~~~~---------------- 59 (153)
.+..+|+|+|+.++|||||+++++... +... ..|.......+.+.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 456899999999999999999998631 1100 11322233333333
Q ss_pred CEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccc
Q 031797 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (153)
Q Consensus 60 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~ 132 (153)
+..+.+|||||+..|...+..+++.+|++++|+|+++..+++.... |..... .++|+++++||+|+..
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~-~~~~~~----~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETV-LRQALG----ERIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHH-HHHHHH----TTCEEEEEEECHHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HHHHHH----cCCCeEEEEECCCcch
Confidence 6789999999999999999999999999999999998777765443 333333 4689999999999874
No 176
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.67 E-value=3.4e-16 Score=112.63 Aligned_cols=118 Identities=19% Similarity=0.262 Sum_probs=75.6
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc-------cCCce-eeEE---------------------------------
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-------TIPTI-GFNV--------------------------------- 53 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-------~~~t~-~~~~--------------------------------- 53 (153)
....+|+|+|.+|+|||||+|++++..+.. ..++. ....
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 455799999999999999999999887521 11100 0000
Q ss_pred ---------------------EEEEE-cCEEEEEEEcCCCCC-------------chhchHhhhcCCCEEEEEEECCCcc
Q 031797 54 ---------------------ETVEY-KNISFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIFVVDSNDRD 98 (153)
Q Consensus 54 ---------------------~~~~~-~~~~~~i~d~~g~~~-------------~~~~~~~~~~~~~~ii~v~d~~~~~ 98 (153)
..+.. ....+.+|||||... +......+++.+|++++|+|.++..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 00011 336799999999753 4455667889999999999974332
Q ss_pred cHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCC
Q 031797 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (153)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~ 135 (153)
........+...+.. .+.|+++|+||+|+.+...
T Consensus 182 ~~~~~~~~i~~~~~~---~~~~~i~v~NK~Dl~~~~~ 215 (315)
T 1jwy_B 182 LANSDALQLAKEVDP---EGKRTIGVITKLDLMDKGT 215 (315)
T ss_dssp STTCSHHHHHHHHCS---SCSSEEEEEECTTSSCSSC
T ss_pred hhhhHHHHHHHHhCC---CCCcEEEEEcCcccCCcch
Confidence 111111123333333 4689999999999976543
No 177
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.66 E-value=2.3e-15 Score=118.63 Aligned_cols=125 Identities=17% Similarity=0.083 Sum_probs=88.6
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCC--cc------------c-------cCCceeeEEEEEEEcC-------EEEEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGE--IV------------T-------TIPTIGFNVETVEYKN-------ISFTVW 66 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~--~~------------~-------~~~t~~~~~~~~~~~~-------~~~~i~ 66 (153)
.+..+|+++|+.|+|||||+++++... +. . ...|.......+.+.+ ..+.+|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 567899999999999999999997421 11 0 0113333334455555 899999
Q ss_pred EcCCCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC---CHHHHHHHh
Q 031797 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKL 143 (153)
Q Consensus 67 d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~---~~~~~~~~~ 143 (153)
||||+..|.......++.+|++++|+|+++...... ...|..... .++|+++++||+|+.... ..+++.+.+
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt-~~~~~~~~~----~~ip~ilviNKiD~~~~~~~~~~~~l~~~l 162 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQS-ETVWRQANK----YKVPRIAFVNKMDRMGANFLKVVNQIKTRL 162 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHH-HHHHHHHHH----cCCCEEEEEeCCCcccccHHHHHHHHHHHh
Confidence 999999998888899999999999999987544432 333333322 468999999999997653 244444444
Q ss_pred C
Q 031797 144 G 144 (153)
Q Consensus 144 ~ 144 (153)
+
T Consensus 163 ~ 163 (704)
T 2rdo_7 163 G 163 (704)
T ss_pred C
Confidence 4
No 178
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.66 E-value=8.8e-17 Score=117.94 Aligned_cols=115 Identities=17% Similarity=0.284 Sum_probs=65.6
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcc-cc---------CCceeeEEEEEE--EcC--EEEEEEEcCCC-------CC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TT---------IPTIGFNVETVE--YKN--ISFTVWDVGGQ-------DK 73 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~-~~---------~~t~~~~~~~~~--~~~--~~~~i~d~~g~-------~~ 73 (153)
...++|+++|++|+|||||++++++.... .. .+|.+.....+. ..+ ..+.+||+||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 45689999999999999999998765432 11 134444433322 223 47999999998 55
Q ss_pred chhchH-------hhhcCC-------------CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 74 IRPLWR-------HYFQNT-------------QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 74 ~~~~~~-------~~~~~~-------------~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
+..... .+++++ |+++|+++.+ ..++......+...+. .++|+++|+||+|+.+.
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH----NKVNIVPVIAKADTLTL 189 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC----S-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc----cCCCEEEEEECCCCCCH
Confidence 655554 444433 3455555432 3445555544444443 57899999999999765
Q ss_pred C
Q 031797 134 M 134 (153)
Q Consensus 134 ~ 134 (153)
.
T Consensus 190 ~ 190 (361)
T 2qag_A 190 K 190 (361)
T ss_dssp H
T ss_pred H
Confidence 4
No 179
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.65 E-value=6e-18 Score=131.00 Aligned_cols=115 Identities=20% Similarity=0.222 Sum_probs=62.1
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCC--cc--------------------------------ccCCceeeEEEEEEEc
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGE--IV--------------------------------TTIPTIGFNVETVEYK 59 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~--~~--------------------------------~~~~t~~~~~~~~~~~ 59 (153)
....++|+++|++++|||||+++|+... +. ....|.......+...
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 3456899999999999999999996421 00 0011333333445556
Q ss_pred CEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcc---cH--H-HHHHHHHHHHcCCCCCCce-EEEEEeCCCccc
Q 031797 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RV--V-EARDELHRMLNEDELRDAV-LLVFANKQDLPN 132 (153)
Q Consensus 60 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~---s~--~-~~~~~~~~~~~~~~~~~~~-iivv~~K~Dl~~ 132 (153)
+..+.+||+|||..|...+...++.+|++|+|+|+++.. .+ . .....+ ..+.. .++| +++|+||+|+.+
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l-~~~~~---lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHA-YLLRA---LGISEIVVSVNKLDLMS 329 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHH-HHHHH---SSCCCEEEEEECGGGGT
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHH-HHHHH---cCCCeEEEEEecccccc
Confidence 789999999999999888888889999999999997531 11 1 111111 12222 2455 999999999976
No 180
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.65 E-value=1.7e-15 Score=108.18 Aligned_cols=116 Identities=20% Similarity=0.225 Sum_probs=76.4
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc-------cCCc----------------------eee--------------
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-------TIPT----------------------IGF-------------- 51 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-------~~~t----------------------~~~-------------- 51 (153)
....+|+++|.+|+|||||++++++..+.+ ..|+ ...
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 456799999999999999999999887631 1122 000
Q ss_pred -----------EEEEEEEc-CEEEEEEEcCCCC-------------CchhchHhhhcCCCEEE-EEEECCCcccHHHHHH
Q 031797 52 -----------NVETVEYK-NISFTVWDVGGQD-------------KIRPLWRHYFQNTQGLI-FVVDSNDRDRVVEARD 105 (153)
Q Consensus 52 -----------~~~~~~~~-~~~~~i~d~~g~~-------------~~~~~~~~~~~~~~~ii-~v~d~~~~~s~~~~~~ 105 (153)
....+... ...+.+||+||.. .+......+++.++.++ +|+|+++..+......
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 00011122 3689999999953 23455667788888776 6899976433332222
Q ss_pred HHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 106 ELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 106 ~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
+...+.. .+.|+++|+||+|+.+..
T Consensus 184 -~~~~~~~---~~~~~i~V~NK~Dl~~~~ 208 (299)
T 2aka_B 184 -IAKEVDP---QGQRTIGVITKLDLMDEG 208 (299)
T ss_dssp -HHHHHCT---TCSSEEEEEECGGGSCTT
T ss_pred -HHHHhCC---CCCeEEEEEEccccCCCC
Confidence 3333333 468999999999997654
No 181
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.64 E-value=3.4e-15 Score=117.12 Aligned_cols=125 Identities=15% Similarity=0.122 Sum_probs=89.6
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCcc--------------c-------cCCceeeEEEEEEEcCEEEEEEEcCCCC
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV--------------T-------TIPTIGFNVETVEYKNISFTVWDVGGQD 72 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~--------------~-------~~~t~~~~~~~~~~~~~~~~i~d~~g~~ 72 (153)
..+..+++++|++|+|||||++++++.... . ...+.......+......+++||+||+.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 356789999999999999999999843211 0 0113333445566788999999999999
Q ss_pred CchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC---CHHHHHHHhC
Q 031797 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLG 144 (153)
Q Consensus 73 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~---~~~~~~~~~~ 144 (153)
.|......+++.+|++++|+|+++.-... ....+..... .++|+++++||+|+. .. ..+++++.++
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~----~~ip~ilv~NKiD~~-~~~~~~~~~l~~~l~ 154 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER----LGLPRMVVVTKLDKG-GDYYALLEDLRSTLG 154 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCEEEEEECGGGC-CCHHHHHHHHHHHHC
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH----ccCCEEEEecCCchh-hhHHHHHHHHHHHhC
Confidence 99888889999999999999987643332 2333433332 368999999999997 32 2444555555
No 182
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.64 E-value=1.4e-15 Score=111.45 Aligned_cols=113 Identities=16% Similarity=0.263 Sum_probs=74.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCcccc-CCcee-----e----------E-----------------------------
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-----F----------N----------------------------- 52 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~t~~-----~----------~----------------------------- 52 (153)
.+|+++|++|+|||||++++.+..+... ..+.. . .
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE 114 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence 4999999999999999999999765211 11000 0 0
Q ss_pred ------------EEEEEE-cCEEEEEEEcCCCCCc-------------hhchHhhhcCCCEEEEEEECCCcccHHHHHHH
Q 031797 53 ------------VETVEY-KNISFTVWDVGGQDKI-------------RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDE 106 (153)
Q Consensus 53 ------------~~~~~~-~~~~~~i~d~~g~~~~-------------~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~ 106 (153)
...+.. ....+.+||+||...+ ......+++++|++++|+|..+..........
T Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~ 194 (360)
T 3t34_A 115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 194 (360)
T ss_dssp SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHH
T ss_pred cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHH
Confidence 001111 2457899999997665 55667788999999999987644333222122
Q ss_pred HHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 107 LHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 107 ~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
+...+. ..+.|+++|+||+|+.+.
T Consensus 195 l~~~~~---~~~~~~i~V~nK~Dl~~~ 218 (360)
T 3t34_A 195 ISREVD---PSGDRTFGVLTKIDLMDK 218 (360)
T ss_dssp HHHHSC---TTCTTEEEEEECGGGCCT
T ss_pred HHHHhc---ccCCCEEEEEeCCccCCC
Confidence 222222 256789999999999754
No 183
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.61 E-value=5.4e-15 Score=113.59 Aligned_cols=126 Identities=18% Similarity=0.202 Sum_probs=92.3
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCC------------------cccc-------CCceeeEEEEEEEcCEEEEEEEcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGE------------------IVTT-------IPTIGFNVETVEYKNISFTVWDVG 69 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~------------------~~~~-------~~t~~~~~~~~~~~~~~~~i~d~~ 69 (153)
.+..+|.|+|+.++|||||..+++... .... .-|+......+.+++.+++++|||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence 457899999999999999999996310 1111 013333346788899999999999
Q ss_pred CCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC---CHHHHHHHhCC
Q 031797 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGL 145 (153)
Q Consensus 70 g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~---~~~~~~~~~~~ 145 (153)
||..|.......++-+|++++|+|+.+-=.. .....|..... .++|+++++||+|..... ..+++.+.++.
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~-qT~~v~~~a~~----~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~~ 182 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEA-QTRKLMDVCRM----RATPVMTFVNKMDREALHPLDVMADIEQHLQI 182 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCH-HHHHHHHHHHH----TTCCEEEEEECTTSCCCCHHHHHHHHHHHHTS
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCccc-ccHHHHHHHHH----hCCceEEEEecccchhcchhHhhhhhhhhcCC
Confidence 9999999999999999999999999753222 33444444443 479999999999997654 45666666654
No 184
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.60 E-value=3.5e-15 Score=121.38 Aligned_cols=113 Identities=18% Similarity=0.170 Sum_probs=79.4
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCC-------ccc--------cCCceee----EEEEEEEcCEEEEEEEcCCCCCch
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGE-------IVT--------TIPTIGF----NVETVEYKNISFTVWDVGGQDKIR 75 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~-------~~~--------~~~t~~~----~~~~~~~~~~~~~i~d~~g~~~~~ 75 (153)
...++|+++|+.++|||||++++.+.. +.. ...+.++ ....+...+..+.+||+||++.|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 456899999999999999999998631 000 0112222 223455567899999999999998
Q ss_pred hchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCce-EEEEEeCCCccc
Q 031797 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPN 132 (153)
Q Consensus 76 ~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~~K~Dl~~ 132 (153)
..+...++.+|++++|+|+++.... ....++... .. .++| +++++||+|+.+
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll-~~---lgIP~IIVVINKiDLv~ 426 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMP-QTREHILLG-RQ---VGVPYIIVFLNKCDMVD 426 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHH-HH---HTCSCEEEEEECCTTCC
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHH-HH---cCCCeEEEEEeeccccc
Confidence 8888889999999999999865332 223333322 22 3577 899999999985
No 185
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.58 E-value=1.1e-14 Score=107.80 Aligned_cols=85 Identities=33% Similarity=0.552 Sum_probs=75.9
Q ss_pred ceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCC----------cccHHHHHHHHHHHHcCCCCC
Q 031797 48 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RDRVVEARDELHRMLNEDELR 117 (153)
Q Consensus 48 t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~ 117 (153)
|.|+....+...+..+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.+....+
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 5566667778889999999999999999999999999999999999998 889999999999988765557
Q ss_pred CceEEEEEeCCCccc
Q 031797 118 DAVLLVFANKQDLPN 132 (153)
Q Consensus 118 ~~~iivv~~K~Dl~~ 132 (153)
++|+++|+||+|+..
T Consensus 284 ~~piiLvgNK~DL~~ 298 (402)
T 1azs_C 284 TISVILFLNKQDLLA 298 (402)
T ss_dssp SCCEEEEEECHHHHH
T ss_pred CCeEEEEEEChhhhh
Confidence 899999999999853
No 186
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.57 E-value=5.1e-15 Score=116.59 Aligned_cols=116 Identities=22% Similarity=0.306 Sum_probs=79.2
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCccc--cCCcee-eE---E-----EEE--------------------------
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIG-FN---V-----ETV-------------------------- 56 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~--~~~t~~-~~---~-----~~~-------------------------- 56 (153)
....++|+|+|.+|+|||||+|++++..... ..+++. .. + .+.
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 3567999999999999999999999876432 222221 00 0 011
Q ss_pred --------------------EEcC----EEEEEEEcCCCCC---chhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHH
Q 031797 57 --------------------EYKN----ISFTVWDVGGQDK---IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHR 109 (153)
Q Consensus 57 --------------------~~~~----~~~~i~d~~g~~~---~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~ 109 (153)
..+. ..+.+|||||... .......+++.+|++++|+|+++..+..... .|..
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~-~l~~ 224 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERR-YLEN 224 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHH-HHHH
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHH-HHHH
Confidence 1111 3689999999543 3455667789999999999998776665443 3333
Q ss_pred HHcCCCCCCceEEEEEeCCCcccc
Q 031797 110 MLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 110 ~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
.+.. .+.|+++|+||+|+.+.
T Consensus 225 ~l~~---~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 225 YIKG---RGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp HTTT---SCCCEEEEEECGGGGGG
T ss_pred HHHh---hCCCEEEEEECcccccc
Confidence 3333 35789999999999754
No 187
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.56 E-value=5.7e-15 Score=109.50 Aligned_cols=80 Identities=29% Similarity=0.319 Sum_probs=47.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCcc-ccC--CceeeEEEEEE---------------------Ec---CEEEEEEEcCC
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTI--PTIGFNVETVE---------------------YK---NISFTVWDVGG 70 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~-~~~--~t~~~~~~~~~---------------------~~---~~~~~i~d~~g 70 (153)
++|+++|.+|+|||||+|++.+.+.. ... .|......... .. ...+.+||+||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999987632 111 12222222111 11 35799999999
Q ss_pred CCCc----hhc---hHhhhcCCCEEEEEEECCCc
Q 031797 71 QDKI----RPL---WRHYFQNTQGLIFVVDSNDR 97 (153)
Q Consensus 71 ~~~~----~~~---~~~~~~~~~~ii~v~d~~~~ 97 (153)
.... ... ....++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7432 212 22457899999999999875
No 188
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.54 E-value=1.9e-14 Score=97.63 Aligned_cols=116 Identities=20% Similarity=0.257 Sum_probs=71.0
Q ss_pred cccccccEEEEEcCCCCcHHHHHHHHhcCCcc-ccCCceeeEE--EEEEEcCEEEEEEEcCCCCC----------chhch
Q 031797 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKNISFTVWDVGGQDK----------IRPLW 78 (153)
Q Consensus 12 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~-~~~~t~~~~~--~~~~~~~~~~~i~d~~g~~~----------~~~~~ 78 (153)
.......+++++|++|+|||||++++.+..+. ...++.+... ..+...+ .+.+||+||... +....
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 44566789999999999999999999887632 2233333221 2233333 688999999743 22222
Q ss_pred Hhhh---cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 79 RHYF---QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 79 ~~~~---~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
..++ +.++++++++|+++..+.... .+...+.. .+.|+++++||+|+...
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~---~~~~~~~v~nK~D~~s~ 152 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVD---SNIAVLVLLTKADKLAS 152 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCH
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHHH---cCCCeEEEEecccCCCc
Confidence 2333 468999999999876554321 11222222 46889999999998653
No 189
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.53 E-value=2.4e-14 Score=104.92 Aligned_cols=84 Identities=30% Similarity=0.559 Sum_probs=68.4
Q ss_pred ceeeEEEEEEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCC----------cccHHHHHHHHHHHHcCCCCC
Q 031797 48 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RDRVVEARDELHRMLNEDELR 117 (153)
Q Consensus 48 t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~ 117 (153)
|.|+....+..++..+.+||++|++.++..|..++++++++|||+|+++ ..++.+...++..+++.....
T Consensus 188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~ 267 (362)
T 1zcb_A 188 TKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267 (362)
T ss_dssp CSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred ccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence 5566667788889999999999999999999999999999999999998 789999999999888765456
Q ss_pred CceEEEEEeCCCcc
Q 031797 118 DAVLLVFANKQDLP 131 (153)
Q Consensus 118 ~~~iivv~~K~Dl~ 131 (153)
++|+++++||+|+.
T Consensus 268 ~~piILv~NK~DL~ 281 (362)
T 1zcb_A 268 NVSIILFLNKTDLL 281 (362)
T ss_dssp TSEEEEEEECHHHH
T ss_pred CCCEEEEEEChhhh
Confidence 89999999999986
No 190
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.49 E-value=1.9e-13 Score=99.96 Aligned_cols=116 Identities=20% Similarity=0.259 Sum_probs=70.7
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc-------cCCce--------------------------------------
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-------TIPTI-------------------------------------- 49 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-------~~~t~-------------------------------------- 49 (153)
....+|+++|.+|+|||||++++.+.++.+ ..|+.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 445799999999999999999999877531 11220
Q ss_pred -----eeE----EEEEEEc-CEEEEEEEcCCCC-------------CchhchHhhhcCCCEEEE-EEECCCcccHHHHHH
Q 031797 50 -----GFN----VETVEYK-NISFTVWDVGGQD-------------KIRPLWRHYFQNTQGLIF-VVDSNDRDRVVEARD 105 (153)
Q Consensus 50 -----~~~----~~~~~~~-~~~~~i~d~~g~~-------------~~~~~~~~~~~~~~~ii~-v~d~~~~~s~~~~~~ 105 (153)
++. ...+... ...+.+||+||.. .+......+++.++.+++ |.|++..-.-....
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~- 187 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL- 187 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHH-
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHH-
Confidence 000 0111222 4689999999953 233455566666665554 66665321111111
Q ss_pred HHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 106 ELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 106 ~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
.+...+.. .+.|+++|+||+|+.+..
T Consensus 188 ~i~~~~~~---~~~~~i~V~NK~Dl~~~~ 213 (353)
T 2x2e_A 188 KVAKEVDP---QGQRTIGVITKLDLMDEG 213 (353)
T ss_dssp HHHHHHCT---TCTTEEEEEECGGGSCTT
T ss_pred HHHHHhCc---CCCceEEEeccccccCcc
Confidence 13333333 468999999999997653
No 191
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.48 E-value=4.2e-13 Score=106.05 Aligned_cols=126 Identities=19% Similarity=0.136 Sum_probs=86.7
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCC--------------cccc---CC----ceeeEEEEEEEc-------CEEEEEE
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGE--------------IVTT---IP----TIGFNVETVEYK-------NISFTVW 66 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~--------------~~~~---~~----t~~~~~~~~~~~-------~~~~~i~ 66 (153)
.+..||+|+|+.++|||||..+++... +... .. |+......+.++ +..++++
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 456899999999999999999996311 0000 01 111222334443 5799999
Q ss_pred EcCCCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC---CHHHHHHHh
Q 031797 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKL 143 (153)
Q Consensus 67 d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~---~~~~~~~~~ 143 (153)
|||||..|.......++-+|++++|+|+.+-=. ......|..... .++|.++++||+|..... ..+++.+.+
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~-~qT~~v~~~a~~----~~lp~i~~iNKiDr~~a~~~~~~~ei~~~l 165 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVE-PQSETVWRQANK----YGVPRIVYVNKMDRQGANFLRVVEQIKKRL 165 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSC-HHHHHHHHHHHH----HTCCEEEEEECSSSTTCCHHHHHHHHHHHH
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCc-hhHHHHHHHHHH----cCCCeEEEEccccccCccHHHHHHHhhhhc
Confidence 999999999999999999999999999964311 233444555444 379999999999987654 355555555
Q ss_pred CC
Q 031797 144 GL 145 (153)
Q Consensus 144 ~~ 145 (153)
+.
T Consensus 166 ~~ 167 (709)
T 4fn5_A 166 GH 167 (709)
T ss_dssp CS
T ss_pred cc
Confidence 43
No 192
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.47 E-value=2.9e-13 Score=99.42 Aligned_cols=112 Identities=18% Similarity=0.154 Sum_probs=80.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCcc-c--cCCceeeEEEEEEEcCEEEEEEEcCCCCCc-------hhchHhhhcCCC
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNISFTVWDVGGQDKI-------RPLWRHYFQNTQ 86 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~~~-~--~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~-------~~~~~~~~~~~~ 86 (153)
..+|.++|.||||||||+|++.+.+.. . +..|.......+...+.++.+.|+||-..- .......++.+|
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad 151 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCN 151 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCS
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcC
Confidence 468999999999999999999986643 2 245777778889999999999999994221 223445678999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcC--CCCCCceEEEEEeCCCcc
Q 031797 87 GLIFVVDSNDRDRVVEARDELHRMLNE--DELRDAVLLVFANKQDLP 131 (153)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~~iivv~~K~Dl~ 131 (153)
++++|+|++++..... .+...+.. ....+.|.+++.||.|..
T Consensus 152 ~il~vvD~~~p~~~~~---~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 152 LLFIILDVNKPLHHKQ---IIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp EEEEEEETTSHHHHHH---HHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred ccccccccCccHHHHH---HHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 9999999987633222 22222211 122456788999999974
No 193
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.46 E-value=3.4e-13 Score=100.47 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=63.4
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcccc---------CCceeeEEEEEE----EcCEEEEEEEcCCCCCch------
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT---------IPTIGFNVETVE----YKNISFTVWDVGGQDKIR------ 75 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~---------~~t~~~~~~~~~----~~~~~~~i~d~~g~~~~~------ 75 (153)
.-.++|+++|++|+|||||++++.+..+... .++.......+. .....+.+||++|.....
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 3457899999999999999999998765211 122222221111 123579999999975431
Q ss_pred -hc------------------hHhhhcCCCEEEEEEECCCc-ccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 76 -PL------------------WRHYFQNTQGLIFVVDSNDR-DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 76 -~~------------------~~~~~~~~~~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
.. ...+++++++.+++|..... .++......+...+. .++|+|+|+||+|+...
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTP 182 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccH
Confidence 11 11233455544444443321 244444433444443 36899999999999764
No 194
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.46 E-value=1.8e-12 Score=94.83 Aligned_cols=79 Identities=22% Similarity=0.238 Sum_probs=57.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCcc-cc--CCceeeEEEEEEEcC-----------------EEEEEEEcCCCCCch--
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKN-----------------ISFTVWDVGGQDKIR-- 75 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~-~~--~~t~~~~~~~~~~~~-----------------~~~~i~d~~g~~~~~-- 75 (153)
++++++|.+|+|||||+|++.+..+. .. ..|.+.....+..++ ..+.+||+||...+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 68999999999999999999987632 12 224444444444443 579999999987653
Q ss_pred -----hchHhhhcCCCEEEEEEECCC
Q 031797 76 -----PLWRHYFQNTQGLIFVVDSND 96 (153)
Q Consensus 76 -----~~~~~~~~~~~~ii~v~d~~~ 96 (153)
.....+++.+|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 233456799999999999986
No 195
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.46 E-value=1.9e-14 Score=112.37 Aligned_cols=124 Identities=20% Similarity=0.234 Sum_probs=88.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcC--Ccc------------ccC-------CceeeEEEEEEEcCEEEEEEEcCCCCCch
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLG--EIV------------TTI-------PTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~--~~~------------~~~-------~t~~~~~~~~~~~~~~~~i~d~~g~~~~~ 75 (153)
-.||.|+|+.++|||||..+++.. .+. ... -|+......+.+++.+++++|||||..|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 468999999999999999999631 110 110 12233344567788999999999999999
Q ss_pred hchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC---CHHHHHHHhCC
Q 031797 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGL 145 (153)
Q Consensus 76 ~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~---~~~~~~~~~~~ 145 (153)
......++-+|++++|+|+.+-=.. .....|..... .++|.++++||+|..... ..+++.+.++.
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~-qT~~v~~~a~~----~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~ 149 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQA-QTRILFHALRK----MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSA 149 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCS-HHHHHHHHHHH----HTCSCEECCEECCSSSCCSHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcH-HHHHHHHHHHH----cCCCeEEEEeccccccCCHHHHHHHHHHHhCC
Confidence 9999999999999999999642111 23344444433 368899999999987654 35556665554
No 196
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.45 E-value=4.1e-13 Score=99.96 Aligned_cols=121 Identities=21% Similarity=0.209 Sum_probs=78.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCcc--cc-CCceeeEEEEEEEcC-EEEEEEEcCCCCCc-------hhchHhhhcCCC
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEYKN-ISFTVWDVGGQDKI-------RPLWRHYFQNTQ 86 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~--~~-~~t~~~~~~~~~~~~-~~~~i~d~~g~~~~-------~~~~~~~~~~~~ 86 (153)
-.+.++|++|+|||||++++.+.... .+ ..|.......+...+ ..+.+||+||.... ........+.++
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 45899999999999999999876432 11 223333444455554 78999999997432 112223456799
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCC-CCCCceEEEEEeCCCccccCCHHHH
Q 031797 87 GLIFVVDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAMNAAEI 139 (153)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~iivv~~K~Dl~~~~~~~~~ 139 (153)
.++.++|++ ..++.....+........ .....|.++++||+|+.......++
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l 290 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKAL 290 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHH
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHH
Confidence 999999998 555655554444433211 1135788999999999865333333
No 197
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.40 E-value=7.6e-13 Score=94.86 Aligned_cols=129 Identities=16% Similarity=0.231 Sum_probs=66.9
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC-Ccccc---------CCceeeEEEEEEE----cCEEEEEEEcCCC-------CC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG-EIVTT---------IPTIGFNVETVEY----KNISFTVWDVGGQ-------DK 73 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~-~~~~~---------~~t~~~~~~~~~~----~~~~~~i~d~~g~-------~~ 73 (153)
.-.++|+++|++|+|||||++++.+. .++.. .++.......+.. ....+.+||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 44689999999999999999998765 33221 1222222222222 3468999999997 45
Q ss_pred chhchH-------hhhcC-------------CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 74 IRPLWR-------HYFQN-------------TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 74 ~~~~~~-------~~~~~-------------~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
+..... .+++. +++++|+.+.+. .+++.....+...+. .+.|+++|+||.|+.+.
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l~----~~~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAIH----NKVNIVPVIAKADTLTL 170 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHHT----TTSCEEEEECCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHHH----hcCCEEEEEEeCCCCCH
Confidence 544433 33332 233455544321 123333222222222 35789999999999754
Q ss_pred C-------CHHHHHHHhCCCcc
Q 031797 134 M-------NAAEITDKLGLHSL 148 (153)
Q Consensus 134 ~-------~~~~~~~~~~~~~~ 148 (153)
. ...+++++.+++.+
T Consensus 171 ~e~~~~~~~~~~~~~~~~~~~~ 192 (301)
T 2qnr_A 171 KERERLKKRILDEIEEHNIKIY 192 (301)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHcCCeEE
Confidence 2 23455566666554
No 198
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.30 E-value=3.3e-12 Score=93.46 Aligned_cols=64 Identities=9% Similarity=0.078 Sum_probs=43.8
Q ss_pred cCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
.+..+.++||||... ......+.+|++++|+|....+...... ....+.|+++|+||+|+.+..
T Consensus 170 ~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~---------~~~~~~p~ivVlNK~Dl~~~~ 233 (355)
T 3p32_A 170 AGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK---------KGVLELADIVVVNKADGEHHK 233 (355)
T ss_dssp TTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC---------TTSGGGCSEEEEECCCGGGHH
T ss_pred CCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH---------HhHhhcCCEEEEECCCCcChh
Confidence 467899999999533 2334458999999999986543331111 112346899999999997653
No 199
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.30 E-value=9.9e-13 Score=94.25 Aligned_cols=106 Identities=16% Similarity=0.082 Sum_probs=79.0
Q ss_pred HHHHHHhcCCcc--ccCCceeeEEEEEEE-cCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcc-cHHHHHHHH
Q 031797 32 TILYKLKLGEIV--TTIPTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDEL 107 (153)
Q Consensus 32 sli~~~~~~~~~--~~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~-s~~~~~~~~ 107 (153)
+++.++..+.|. .+.||.+..+. ... .+.++.+||+ ++++...+..+++++|++++|+|++++. ++..+..|+
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l 108 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFL 108 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHH
Confidence 577788777775 34678884443 322 2237999999 8999999999999999999999999887 676666666
Q ss_pred HHHHcCCCCCCceEEEEEeCCCccccCC---HHHHHHHhC
Q 031797 108 HRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLG 144 (153)
Q Consensus 108 ~~~~~~~~~~~~~iivv~~K~Dl~~~~~---~~~~~~~~~ 144 (153)
..+ .. .++|+++|+||+|+.+... ..++++.++
T Consensus 109 ~~~-~~---~~~piilv~NK~DL~~~~~v~~~~~~~~~~~ 144 (301)
T 1u0l_A 109 VLA-EK---NELETVMVINKMDLYDEDDLRKVRELEEIYS 144 (301)
T ss_dssp HHH-HH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHT
T ss_pred HHH-HH---CCCCEEEEEeHHHcCCchhHHHHHHHHHHHh
Confidence 544 32 4799999999999976533 455666655
No 200
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.29 E-value=4e-12 Score=93.82 Aligned_cols=85 Identities=21% Similarity=0.244 Sum_probs=52.0
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc-c--CCceeeEEEEEEEc-----------------CEEEEEEEcCCCCCc
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-T--IPTIGFNVETVEYK-----------------NISFTVWDVGGQDKI 74 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~--~~t~~~~~~~~~~~-----------------~~~~~i~d~~g~~~~ 74 (153)
....++.++|.+|+|||||++++.+..+.. . ..|.......+... ...+.+||+||....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 456899999999999999999999875421 1 22333444444433 235999999997654
Q ss_pred hh-------chHhhhcCCCEEEEEEECCCccc
Q 031797 75 RP-------LWRHYFQNTQGLIFVVDSNDRDR 99 (153)
Q Consensus 75 ~~-------~~~~~~~~~~~ii~v~d~~~~~s 99 (153)
.. .+..+++.+|++++|+|+++.++
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 32 45677899999999999976544
No 201
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.27 E-value=6e-12 Score=84.97 Aligned_cols=147 Identities=19% Similarity=0.247 Sum_probs=91.8
Q ss_pred HHHHHhhcccccccEEEEEcCCC-CcHHHHHHHHhcCCcccc---CC---ce----eeEE-----EEEEE----------
Q 031797 5 FTKLFSKLFAKKEMRILMVGLDA-AGKTTILYKLKLGEIVTT---IP---TI----GFNV-----ETVEY---------- 58 (153)
Q Consensus 5 ~~~~~~~~~~~~~~~i~i~G~~~-~GKtsli~~~~~~~~~~~---~~---t~----~~~~-----~~~~~---------- 58 (153)
+++++++.......+++++||.= .=..+|+.++....-..+ .+ .. |+.+ ..++.
T Consensus 4 ~~~~~~s~~~~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~e 83 (227)
T 3l82_B 4 VTSFLHSLIIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKE 83 (227)
T ss_dssp CCCSSSCCCCCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC----
T ss_pred HHHHHHHhccCCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHH
Confidence 45667888888899999999853 235588888877541110 01 00 1111 01111
Q ss_pred ----------cCEEEEEEEcC------CCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHH---HHHHcCCC-CCC
Q 031797 59 ----------KNISFTVWDVG------GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL---HRMLNEDE-LRD 118 (153)
Q Consensus 59 ----------~~~~~~i~d~~------g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~---~~~~~~~~-~~~ 118 (153)
...++-....| |+..++..|..|++++|++|||+|++|.+.++ ....+ ..++.... ..+
T Consensus 84 r~~~~~~~~~~~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~g 162 (227)
T 3l82_B 84 RDRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSG 162 (227)
T ss_dssp ---------------------------------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSC
T ss_pred hhhhhhhhhhhhhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCC
Confidence 01233334444 78899999999999999999999999876654 44433 44444432 368
Q ss_pred ceEEEEEeCC-CccccCCHHHHHHHhCCCcccCCCC
Q 031797 119 AVLLVFANKQ-DLPNAMNAAEITDKLGLHSLRQRHW 153 (153)
Q Consensus 119 ~~iivv~~K~-Dl~~~~~~~~~~~~~~~~~~~~~~~ 153 (153)
+|++|++||. |+.+.....++.+.+++..+ .|+|
T Consensus 163 apLLVlANKqqDlp~Ams~~EI~e~L~L~~l-~R~W 197 (227)
T 3l82_B 163 RPLLVLSCISQGDVKRMPCFYLAHELHLNLL-NHPW 197 (227)
T ss_dssp SCEEEEEEESSTTSCBCCHHHHHHHTTGGGG-CSCE
T ss_pred CeEEEEeCCCcCccCCCCHHHHHHHcCCcCC-CCCE
Confidence 9999999995 89999999999999999998 4887
No 202
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.26 E-value=9.5e-12 Score=90.87 Aligned_cols=107 Identities=14% Similarity=0.089 Sum_probs=62.6
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC------Cc--cccCCcee--------------------eEEE-------E----
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG------EI--VTTIPTIG--------------------FNVE-------T---- 55 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~------~~--~~~~~t~~--------------------~~~~-------~---- 55 (153)
.....|.++|++|+|||||+|++.+. +. ....++.. .... .
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~ 151 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV 151 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence 34689999999999999999999852 11 01111000 0000 0
Q ss_pred ----------EEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEE
Q 031797 56 ----------VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFA 125 (153)
Q Consensus 56 ----------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~ 125 (153)
+...+..+.++|++|.... .....+.+|.+++|+|+++......... .+ .+.|.++++
T Consensus 152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVl 219 (349)
T 2www_A 152 TRTTNEAILLCEGAGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAV 219 (349)
T ss_dssp CTTHHHHHHHHHHTTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEE
T ss_pred hHHHHHHHHhhccCCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEE
Confidence 0124568899999995321 2344678999999999875432211111 11 235789999
Q ss_pred eCCCcccc
Q 031797 126 NKQDLPNA 133 (153)
Q Consensus 126 ~K~Dl~~~ 133 (153)
||+|+.+.
T Consensus 220 NK~Dl~~~ 227 (349)
T 2www_A 220 TKSDGDLI 227 (349)
T ss_dssp CCCSGGGH
T ss_pred eeecCCCc
Confidence 99999753
No 203
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.18 E-value=2.5e-10 Score=90.38 Aligned_cols=116 Identities=19% Similarity=0.193 Sum_probs=72.1
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccc-c--CCcee-----------------------------------------
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-T--IPTIG----------------------------------------- 50 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-~--~~t~~----------------------------------------- 50 (153)
..-.+|+|+|..++||||++|++++..+.+ . ..|..
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 445799999999999999999999876521 0 00100
Q ss_pred ------e----EEEEEEE-cCEEEEEEEcCCCCC-------------chhchHhhh-cCCCEEEEEEECCCcccHHHHHH
Q 031797 51 ------F----NVETVEY-KNISFTVWDVGGQDK-------------IRPLWRHYF-QNTQGLIFVVDSNDRDRVVEARD 105 (153)
Q Consensus 51 ------~----~~~~~~~-~~~~~~i~d~~g~~~-------------~~~~~~~~~-~~~~~ii~v~d~~~~~s~~~~~~ 105 (153)
+ ....+.. ....+.++|+||-.. +......++ +.+|++++|+|++.........
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l- 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL- 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH-
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH-
Confidence 0 0011122 224688999999533 122233333 5789999999997543222221
Q ss_pred HHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 106 ELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 106 ~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
.+...+.. .+.|+++|+||+|+.+..
T Consensus 208 ~ll~~L~~---~g~pvIlVlNKiDlv~~~ 233 (772)
T 3zvr_A 208 KIAKEVDP---QGQRTIGVITKLDLMDEG 233 (772)
T ss_dssp HHHHHHCT---TCSSEEEEEECTTSSCTT
T ss_pred HHHHHHHh---cCCCEEEEEeCcccCCcc
Confidence 23333343 468999999999997653
No 204
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.12 E-value=4.6e-11 Score=83.53 Aligned_cols=73 Identities=15% Similarity=0.030 Sum_probs=42.4
Q ss_pred EEEEEEEcCCCCCchhchH------hhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 61 ISFTVWDVGGQDKIRPLWR------HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~------~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
..+.+||+||......... ..+.. +++++++|.....+.......+..........+.|+++|+||+|+.+..
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 4899999999865432211 23455 8888899875433332222211111000011357899999999997643
No 205
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.12 E-value=1.3e-10 Score=79.30 Aligned_cols=107 Identities=15% Similarity=0.143 Sum_probs=62.9
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCcc-------ccCCce----------eeEEEEE------------------EEc
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-------TTIPTI----------GFNVETV------------------EYK 59 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~-------~~~~t~----------~~~~~~~------------------~~~ 59 (153)
.+..+++++|.+|+|||||++++.+.... ...+.. +.....+ ...
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS 107 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence 45689999999999999999999764210 011100 1111111 113
Q ss_pred CEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 60 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
+..+.+||++|+..... .+....+.+++|+|+++..... . .+... .+.|+++++||+|+.+.
T Consensus 108 ~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~~--~-~~~~~------~~~~~iiv~NK~Dl~~~ 169 (221)
T 2wsm_A 108 DCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDVV--E-KHPEI------FRVADLIVINKVALAEA 169 (221)
T ss_dssp TCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTHH--H-HCHHH------HHTCSEEEEECGGGHHH
T ss_pred CCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchhh--h-hhhhh------hhcCCEEEEecccCCcc
Confidence 45788999998511110 1112568899999987543211 1 11111 14678999999999653
No 206
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.12 E-value=3e-11 Score=87.95 Aligned_cols=63 Identities=13% Similarity=0.123 Sum_probs=40.5
Q ss_pred cCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
.+..+.++||||...... ...+.+|++++|+|.+....+..... .. .+.|+++|+||+|+.+.
T Consensus 147 ~~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv~NK~Dl~~~ 209 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIVINKDDGDNH 209 (341)
T ss_dssp TTCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH------HHHCSEEEECCCCTTCH
T ss_pred cCCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEEEECCCCCCh
Confidence 367899999999765433 24689999999999864322110000 00 14678999999999764
No 207
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.09 E-value=2.3e-10 Score=84.01 Aligned_cols=79 Identities=20% Similarity=0.237 Sum_probs=54.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCcc-ccC--CceeeEEEEEEE---------------------cCEEEEEEEcCCCCC
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTI--PTIGFNVETVEY---------------------KNISFTVWDVGGQDK 73 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~-~~~--~t~~~~~~~~~~---------------------~~~~~~i~d~~g~~~ 73 (153)
+++.++|.+|+|||||++++.+.... ... .|...+...... ....+.+||+||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 57999999999999999999875421 111 122222222222 245799999999765
Q ss_pred c-------hhchHhhhcCCCEEEEEEECCC
Q 031797 74 I-------RPLWRHYFQNTQGLIFVVDSND 96 (153)
Q Consensus 74 ~-------~~~~~~~~~~~~~ii~v~d~~~ 96 (153)
+ .......++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 4 2234456899999999999975
No 208
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.05 E-value=6.8e-11 Score=83.45 Aligned_cols=84 Identities=21% Similarity=0.300 Sum_probs=64.8
Q ss_pred cCCCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHH---HHHHHcCCC-CCCceEEEEEeC-CCccccCCHHHHHHH
Q 031797 68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDE---LHRMLNEDE-LRDAVLLVFANK-QDLPNAMNAAEITDK 142 (153)
Q Consensus 68 ~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~---~~~~~~~~~-~~~~~iivv~~K-~Dl~~~~~~~~~~~~ 142 (153)
.+|+..++..|..|++++|++|||+|++|.+.++ .... +..++.... ..++|++|++|| .|+.+.....++++.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 3578999999999999999999999999887754 3332 223333221 257999999996 699999999999999
Q ss_pred hCCCcccCCCC
Q 031797 143 LGLHSLRQRHW 153 (153)
Q Consensus 143 ~~~~~~~~~~~ 153 (153)
+++..+. |+|
T Consensus 273 L~L~~l~-r~W 282 (312)
T 3l2o_B 273 LHLNLLN-HPW 282 (312)
T ss_dssp TTGGGGC-SCE
T ss_pred cCCccCC-CcE
Confidence 9999884 777
No 209
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.03 E-value=1.6e-09 Score=80.00 Aligned_cols=82 Identities=20% Similarity=0.302 Sum_probs=59.4
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCc-c-ccCC--ceeeEEEEEEEcC-----------------EEEEEEEcCCCC-
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEI-V-TTIP--TIGFNVETVEYKN-----------------ISFTVWDVGGQD- 72 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~-~-~~~~--t~~~~~~~~~~~~-----------------~~~~i~d~~g~~- 72 (153)
....++.++|++|+|||||+|.+.+... . ...| |.......+...+ ..+.+||+||..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 3468999999999999999999998654 1 2222 4444445555543 468999999932
Q ss_pred ------CchhchHhhhcCCCEEEEEEECCC
Q 031797 73 ------KIRPLWRHYFQNTQGLIFVVDSND 96 (153)
Q Consensus 73 ------~~~~~~~~~~~~~~~ii~v~d~~~ 96 (153)
.+...+...++.+|++++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 233355667889999999999864
No 210
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.03 E-value=9.3e-11 Score=86.21 Aligned_cols=111 Identities=10% Similarity=0.113 Sum_probs=66.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcC-----C-cc-ccCCceeeEEEEEEEcCEEEEEEEcCCCCCch--------hchHhh
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLG-----E-IV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIR--------PLWRHY 81 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~-----~-~~-~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~--------~~~~~~ 81 (153)
..+++++|.+|+|||||+|++++. . .. ...+.+......+... ..+.++|+||-.... .....+
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~~~ 240 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE-SGATLYDTPGIINHHQMAHFVDARDLKII 240 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS-TTCEEEECCSCCCCSSGGGGSCTTTHHHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC-CCeEEEeCCCcCcHHHHHHHHhHHHHHHH
Confidence 468999999999999999999875 2 21 2222222222233332 248999999943221 111222
Q ss_pred h--cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 82 F--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 82 ~--~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
+ +..+.++++++....-.+.+... +......+.|+++++||.|....
T Consensus 241 ~~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~~~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 241 TPKREIHPRVYQLNEGQTLFFGGLAR-----LDYIKGGRRSFVCYMANELTVHR 289 (369)
T ss_dssp SCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEE
T ss_pred hcccccCceEEEEcCCceEEECCEEE-----EEEccCCCceEEEEecCCccccc
Confidence 2 67899999998732211111000 11122257899999999998754
No 211
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.95 E-value=1.5e-09 Score=76.65 Aligned_cols=117 Identities=15% Similarity=0.234 Sum_probs=63.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCcccc----------CCceeeEEEEEEE----cCEEEEEEEcCCCCCc-------h
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT----------IPTIGFNVETVEY----KNISFTVWDVGGQDKI-------R 75 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~----------~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~-------~ 75 (153)
.++++++|++|+|||||++.+.+...+.. ..+.......+.. -...+.++|++|-... .
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 47899999999999999999987432210 0111111111111 1247899999873211 0
Q ss_pred hc-------h----Hh----------hhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 76 PL-------W----RH----------YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 76 ~~-------~----~~----------~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
.. . .. .+..+++.++++|... ..+......+...+.. . .++++|.+|.|.....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~-~gL~~lD~~~l~~L~~---~-~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTG-HSLRPLDLEFMKHLSK---V-VNIIPVIAKADTMTLE 156 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCS-SSCCHHHHHHHHHHHT---T-SEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCC-CcCCHHHHHHHHHHHh---c-CcEEEEEeccccCCHH
Confidence 00 0 00 1113578888888541 1122222333333343 2 8999999999987654
Q ss_pred CHHH
Q 031797 135 NAAE 138 (153)
Q Consensus 135 ~~~~ 138 (153)
+...
T Consensus 157 e~~~ 160 (270)
T 3sop_A 157 EKSE 160 (270)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 212
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.94 E-value=6.7e-09 Score=77.37 Aligned_cols=116 Identities=16% Similarity=0.259 Sum_probs=62.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCcccc-----CCceeeEEEEEEEc--C--EEEEEEEcCCCCCc--------------
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEYK--N--ISFTVWDVGGQDKI-------------- 74 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~~-----~~t~~~~~~~~~~~--~--~~~~i~d~~g~~~~-------------- 74 (153)
++++++|++|+|||||++.+.+..+... .+........+... . ..+.++|++|....
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 4599999999999999999988653211 11111111112222 1 37899999975321
Q ss_pred hhchHhh-------------hcC--CCE-EEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHH
Q 031797 75 RPLWRHY-------------FQN--TQG-LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE 138 (153)
Q Consensus 75 ~~~~~~~-------------~~~--~~~-ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~ 138 (153)
...+..+ ..+ +|+ ++|+.|.... +......+...+. .++|+|+|.||+|.....+...
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~--l~~~Dieilk~L~----~~~~vI~Vi~KtD~Lt~~E~~~ 196 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS--LKSLDLVTMKKLD----SKVNIIPIIAKADAISKSELTK 196 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----CHHHHHHHHHTC----SCSEEEEEESCGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC--CCHHHHHHHHHHh----hCCCEEEEEcchhccchHHHHH
Confidence 0111111 112 233 5556665432 2222233344443 4789999999999876654443
Q ss_pred H
Q 031797 139 I 139 (153)
Q Consensus 139 ~ 139 (153)
+
T Consensus 197 l 197 (427)
T 2qag_B 197 F 197 (427)
T ss_dssp H
T ss_pred H
Confidence 3
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.93 E-value=5.1e-10 Score=82.28 Aligned_cols=113 Identities=8% Similarity=0.125 Sum_probs=64.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCC------cc--ccCCceeeEEEEEEEcCEEEEEEEcCCCCCch--------hchHh
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGE------IV--TTIPTIGFNVETVEYKNISFTVWDVGGQDKIR--------PLWRH 80 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~------~~--~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~--------~~~~~ 80 (153)
..+++++|.+|+|||||+|++++.. .. ...+.+......+.... .+.++||||-.... .....
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~liDtPG~~~~~~~~~~l~~~~l~~ 238 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE-ESSLYDTPGIINHHQMAHYVGKQSLKL 238 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS-SCEEEECCCBCCTTSGGGGSCHHHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC-CeEEEeCCCcCcHHHHHHHhhHHHHHH
Confidence 4789999999999999999998752 11 11221111222233222 38999999953221 11111
Q ss_pred h--hcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCC
Q 031797 81 Y--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (153)
Q Consensus 81 ~--~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~ 135 (153)
+ .+..+.++++++........+... +......+.|+++++||.|......
T Consensus 239 ~~~~~~i~~~~~~l~~~~~~~~g~l~~-----~d~l~~~~~~~~~v~nk~d~~~~~~ 290 (368)
T 3h2y_A 239 ITPTKEIKPMVFQLNEEQTLFFSGLAR-----FDYVSGGRRAFTCHFSNRLTIHRTK 290 (368)
T ss_dssp HSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEEE
T ss_pred hccccccCceEEEEcCCCEEEEcceEE-----EEEecCCCceEEEEecCcccccccc
Confidence 1 356788899988732111111000 1112225789999999999876543
No 214
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.85 E-value=3.6e-08 Score=75.05 Aligned_cols=125 Identities=18% Similarity=0.173 Sum_probs=71.6
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHh------cCCcc--cc---CCc-----------eeeEEEEE----------------
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLK------LGEIV--TT---IPT-----------IGFNVETV---------------- 56 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~------~~~~~--~~---~~t-----------~~~~~~~~---------------- 56 (153)
.+...|+++|.+|+||||+++.+. +.+.. .. .+. .++.....
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 345789999999999999999997 33311 00 000 00111110
Q ss_pred -EEcCEEEEEEEcCCCCCch-hch---Hhh--hcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceE-EEEEeCC
Q 031797 57 -EYKNISFTVWDVGGQDKIR-PLW---RHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVL-LVFANKQ 128 (153)
Q Consensus 57 -~~~~~~~~i~d~~g~~~~~-~~~---~~~--~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i-ivv~~K~ 128 (153)
...+..+.++||||..... ... ... ...+|.+++|+|+............ +.. .+|+ .+|+||.
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a~~----~~~----~~~i~gvVlNK~ 250 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKA----FKD----KVDVASVIVTKL 250 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHHHH----HHH----HHCCCCEEEECT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHHHH----HHh----hcCceEEEEeCC
Confidence 1146789999999975421 111 111 1278999999999764332222222 121 2565 8999999
Q ss_pred CccccCC-HHHHHHHhCCCc
Q 031797 129 DLPNAMN-AAEITDKLGLHS 147 (153)
Q Consensus 129 Dl~~~~~-~~~~~~~~~~~~ 147 (153)
|...... ...+.+..+.|.
T Consensus 251 D~~~~~g~~l~~~~~~g~PI 270 (504)
T 2j37_W 251 DGHAKGGGALSAVAATKSPI 270 (504)
T ss_dssp TSCCCCTHHHHHHHHHCCCE
T ss_pred ccccchHHHHHHHHHhCCCe
Confidence 9875443 334556666553
No 215
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.79 E-value=1.1e-08 Score=74.42 Aligned_cols=107 Identities=13% Similarity=0.160 Sum_probs=62.2
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhc------CCcc--ccCCce--------------ee------EEEE----------
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKL------GEIV--TTIPTI--------------GF------NVET---------- 55 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~------~~~~--~~~~t~--------------~~------~~~~---------- 55 (153)
..+...+.++|++|+|||||++.+.+ ++.. ...++. +. .+..
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G 131 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGG 131 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccc
Confidence 35568899999999999999999973 2211 000000 00 0000
Q ss_pred -----------EEEcCEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEE
Q 031797 56 -----------VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124 (153)
Q Consensus 56 -----------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv 124 (153)
+...+..+.++||+|...-. ....+.+|.+++++|....+......... .+.+.+++
T Consensus 132 ~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---------~~~~~ivv 199 (337)
T 2qm8_A 132 VAAKTRETMLLCEAAGFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI---------FELADMIA 199 (337)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---------HHHCSEEE
T ss_pred hHHHHHHHHHHHhcCCCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHH---------hccccEEE
Confidence 11246789999999964322 23357899999999975432211110000 12455777
Q ss_pred EeCCCccc
Q 031797 125 ANKQDLPN 132 (153)
Q Consensus 125 ~~K~Dl~~ 132 (153)
+||+|+..
T Consensus 200 lNK~Dl~~ 207 (337)
T 2qm8_A 200 VNKADDGD 207 (337)
T ss_dssp EECCSTTC
T ss_pred EEchhccC
Confidence 79999753
No 216
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.68 E-value=6.6e-08 Score=65.93 Aligned_cols=27 Identities=22% Similarity=0.182 Sum_probs=24.0
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~ 41 (153)
.+.++|+++|.+|+|||||++++....
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 467999999999999999999998753
No 217
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.62 E-value=8.5e-09 Score=72.43 Aligned_cols=55 Identities=25% Similarity=0.293 Sum_probs=35.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEE--EEEEEcCEEEEEEEcCCCCC
Q 031797 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYKNISFTVWDVGGQDK 73 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~d~~g~~~ 73 (153)
++++++|.+|+|||||+|++.+.......++.+... ..+. .+..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~-~~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFS-LENGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEE-CTTSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEE-eCCCEEEEECCCccc
Confidence 699999999999999999999876543322222211 1122 235789999999643
No 218
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.58 E-value=3.6e-08 Score=69.91 Aligned_cols=58 Identities=22% Similarity=0.351 Sum_probs=37.2
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceee--EEEEEEEcCEEEEEEEcCCCC
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF--NVETVEYKNISFTVWDVGGQD 72 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~i~d~~g~~ 72 (153)
....++++++|.+|+|||||+|++.+.......+..+. ....+.. +..+.++||||-.
T Consensus 117 ~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~ 176 (282)
T 1puj_A 117 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV-GKELELLDTPGIL 176 (282)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE-TTTEEEEECCCCC
T ss_pred CCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe-CCCEEEEECcCcC
Confidence 35678999999999999999999998764322211111 1112222 3478999999953
No 219
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.34 E-value=8e-07 Score=68.84 Aligned_cols=59 Identities=20% Similarity=0.186 Sum_probs=40.4
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcCCcc-cc-----CCceeeEEEEEE---EcCEEEEEEEcCCCC
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TT-----IPTIGFNVETVE---YKNISFTVWDVGGQD 72 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~-~~-----~~t~~~~~~~~~---~~~~~~~i~d~~g~~ 72 (153)
......|+|+|.+|+|||||+|++++.... .. ..|.++...... ..+..+.++||||-.
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 456789999999999999999999987632 11 112222211111 245789999999954
No 220
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.34 E-value=9.4e-07 Score=66.19 Aligned_cols=122 Identities=20% Similarity=0.189 Sum_probs=68.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcC------Ccc--ccC--------------------------Ccee---eEEEEE-EE
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLG------EIV--TTI--------------------------PTIG---FNVETV-EY 58 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~------~~~--~~~--------------------------~t~~---~~~~~~-~~ 58 (153)
...|+++|++|+||||+++.+... +.. ... .+.. .....+ ..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998652 110 000 0000 000000 01
Q ss_pred cCEEEEEEEcCCCCCchhchH----hh--hcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCc-e-EEEEEeCCCc
Q 031797 59 KNISFTVWDVGGQDKIRPLWR----HY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA-V-LLVFANKQDL 130 (153)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~~----~~--~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~-iivv~~K~Dl 130 (153)
.+..+.++|+||......... .. ...+|.+++|+|+...... .... ..+.. .. | ..+|+||.|.
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~---~~~~-~~~~~----~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQA---GIQA-KAFKE----AVGEIGSIIVTKLDG 250 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGH---HHHH-HHHHT----TSCSCEEEEEECSSS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHH---HHHH-HHHhh----cccCCeEEEEeCCCC
Confidence 456899999999754321111 11 2268999999998644321 1222 22222 34 5 7899999998
Q ss_pred cccCC-HHHHHHHhCCC
Q 031797 131 PNAMN-AAEITDKLGLH 146 (153)
Q Consensus 131 ~~~~~-~~~~~~~~~~~ 146 (153)
..... ...+....+.|
T Consensus 251 ~~~~g~~l~~~~~~~~p 267 (432)
T 2v3c_C 251 SAKGGGALSAVAETKAP 267 (432)
T ss_dssp CSTTHHHHHHHHHSSCC
T ss_pred ccchHHHHHHHHHHCCC
Confidence 64322 33455555544
No 221
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.31 E-value=6.2e-07 Score=69.91 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 031797 19 RILMVGLDAAGKTTILYKLKLGE 41 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~~ 41 (153)
.++++|++|+|||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999998753
No 222
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.27 E-value=9.7e-07 Score=63.15 Aligned_cols=59 Identities=19% Similarity=0.105 Sum_probs=47.2
Q ss_pred CCCchhchHhhhcCCCEEEEEEECCCcc-cHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc
Q 031797 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (153)
Q Consensus 71 ~~~~~~~~~~~~~~~~~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~ 133 (153)
++++......+++++|++++|+|++++. ++..+..|+..+ .. .++|+++|+||+|+.++
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~-~~---~~~~~ilV~NK~DL~~~ 125 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVY-EY---FKVEPVIVFNKIDLLNE 125 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHH-HH---TTCEEEEEECCGGGCCH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHH-Hh---CCCCEEEEEEcccCCCc
Confidence 6677777777899999999999999886 777666666544 32 57999999999999754
No 223
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.22 E-value=4e-06 Score=62.41 Aligned_cols=109 Identities=12% Similarity=0.142 Sum_probs=58.5
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcCCcccc--CCceee----EEEEEEEcC-EEEEEEEcCCCCCc----hhc-hHhhhc
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGF----NVETVEYKN-ISFTVWDVGGQDKI----RPL-WRHYFQ 83 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~--~~t~~~----~~~~~~~~~-~~~~i~d~~g~~~~----~~~-~~~~~~ 83 (153)
....+.++|++|+|||||+|.+.+-..+.. ....+. ......... ..+.++|++|...- ... ....+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 345899999999999999999988432211 000000 001111121 25889999984211 111 111233
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcc
Q 031797 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (153)
Q Consensus 84 ~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~ 131 (153)
..+..++ ++... ++.....+...+.. .+.|+++|.||.|+.
T Consensus 148 ~~~~~~~-lS~G~---~~kqrv~la~aL~~---~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 148 EYDFFII-ISATR---FKKNDIDIAKAISM---MKKEFYFVRTKVDSD 188 (413)
T ss_dssp GCSEEEE-EESSC---CCHHHHHHHHHHHH---TTCEEEEEECCHHHH
T ss_pred ccCCeEE-eCCCC---ccHHHHHHHHHHHh---cCCCeEEEEecCccc
Confidence 4455554 77652 11222223333332 357999999999874
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.21 E-value=5e-06 Score=62.30 Aligned_cols=125 Identities=20% Similarity=0.197 Sum_probs=69.0
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhc------CCcc-----ccCC-----------ceeeEEEEE-----------------
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKL------GEIV-----TTIP-----------TIGFNVETV----------------- 56 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~------~~~~-----~~~~-----------t~~~~~~~~----------------- 56 (153)
++..|+++|++|+||||++..+.. .+.. ...+ ..+......
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 467899999999999999988853 1110 0000 011111100
Q ss_pred EEcCEEEEEEEcCCCCCchhchH------hhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCc
Q 031797 57 EYKNISFTVWDVGGQDKIRPLWR------HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (153)
Q Consensus 57 ~~~~~~~~i~d~~g~~~~~~~~~------~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl 130 (153)
...+..+.++||+|......... .....+|.+++|+|+...+...+....+.. . -.+..+|+||.|.
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~~---~----~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKE---A----TPIGSIIVTKLDG 251 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHH---S----CTTEEEEEECCSS
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHHh---h----CCCeEEEEECCCC
Confidence 01247899999999543221110 112357999999998754333232222222 1 1235689999998
Q ss_pred cccC-CHHHHHHHhCCCc
Q 031797 131 PNAM-NAAEITDKLGLHS 147 (153)
Q Consensus 131 ~~~~-~~~~~~~~~~~~~ 147 (153)
.... ....+....++|.
T Consensus 252 ~~~gG~~ls~~~~~g~PI 269 (443)
T 3dm5_A 252 SAKGGGALSAVAATGAPI 269 (443)
T ss_dssp CSSHHHHHHHHHTTCCCE
T ss_pred cccccHHHHHHHHHCCCE
Confidence 6543 2344444555543
No 225
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.98 E-value=1.4e-05 Score=56.97 Aligned_cols=123 Identities=20% Similarity=0.201 Sum_probs=68.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhc------CCcc--c---cCCc-----------eeeEEEE-----------------EE
Q 031797 17 EMRILMVGLDAAGKTTILYKLKL------GEIV--T---TIPT-----------IGFNVET-----------------VE 57 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~------~~~~--~---~~~t-----------~~~~~~~-----------------~~ 57 (153)
...++++|++|+||||++..+.. .+.. . ..+. .++.... ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 56788999999999999988852 2210 0 0000 0110000 00
Q ss_pred EcCEEEEEEEcCCCCC--chh-chH-----hhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCce-EEEEEeCC
Q 031797 58 YKNISFTVWDVGGQDK--IRP-LWR-----HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQ 128 (153)
Q Consensus 58 ~~~~~~~i~d~~g~~~--~~~-~~~-----~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~~K~ 128 (153)
..+..+.++||||... ... ... .....+|.+++|+|....... ......+ .. ..| ..+|+||.
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~~~~~-~~----~~~i~gvVlnk~ 249 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKA---YDLASKF-NQ----ASKIGTIIITKM 249 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHH-HH----TCTTEEEEEECG
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHH---HHHHHHH-Hh----hCCCCEEEEeCC
Confidence 1456899999999766 321 111 123468999999998643222 2222222 21 244 67889999
Q ss_pred CccccC-CHHHHHHHhCCCc
Q 031797 129 DLPNAM-NAAEITDKLGLHS 147 (153)
Q Consensus 129 Dl~~~~-~~~~~~~~~~~~~ 147 (153)
|..... ....+....++|.
T Consensus 250 D~~~~~g~~~~~~~~~~~pi 269 (297)
T 1j8m_F 250 DGTAKGGGALSAVAATGATI 269 (297)
T ss_dssp GGCTTHHHHHHHHHTTTCCE
T ss_pred CCCcchHHHHHHHHHHCcCE
Confidence 976432 2345556666553
No 226
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.95 E-value=4.6e-05 Score=57.06 Aligned_cols=124 Identities=19% Similarity=0.215 Sum_probs=67.2
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhc------CCcc--c---cC-----------CceeeEEEE-----------------E
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKL------GEIV--T---TI-----------PTIGFNVET-----------------V 56 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~------~~~~--~---~~-----------~t~~~~~~~-----------------~ 56 (153)
.+.-++++|++|+||||++..+.. .+.. . .. ...+..... .
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 367899999999999999988852 1110 0 00 000110100 0
Q ss_pred EEcCEEEEEEEcCCCCC--chh----chHhh--hcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCC
Q 031797 57 EYKNISFTVWDVGGQDK--IRP----LWRHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128 (153)
Q Consensus 57 ~~~~~~~~i~d~~g~~~--~~~----~~~~~--~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~ 128 (153)
...+..+.++|+||... ... ..... .-..+.+++|+|+...+...+....+...+ .+..+|+||.
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~~-------~~~gVIlTKl 248 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQAS-------PIGSVIITKM 248 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHHC-------SSEEEEEECG
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhccc-------CCcEEEEecc
Confidence 01256888999999644 111 11111 124689999999875433333333333321 2367889999
Q ss_pred CccccC-CHHHHHHHhCCC
Q 031797 129 DLPNAM-NAAEITDKLGLH 146 (153)
Q Consensus 129 Dl~~~~-~~~~~~~~~~~~ 146 (153)
|..... ....+....++|
T Consensus 249 D~~a~~G~als~~~~~g~P 267 (433)
T 3kl4_A 249 DGTAKGGGALSAVVATGAT 267 (433)
T ss_dssp GGCSCHHHHHHHHHHHTCE
T ss_pred cccccchHHHHHHHHHCCC
Confidence 976332 233444445554
No 227
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.79 E-value=0.00013 Score=54.68 Aligned_cols=123 Identities=23% Similarity=0.239 Sum_probs=68.5
Q ss_pred cccEEEEEcCCCCcHHHHHHHHh-------cCCcc-----ccCC-----------ceeeEEEE-----------------
Q 031797 16 KEMRILMVGLDAAGKTTILYKLK-------LGEIV-----TTIP-----------TIGFNVET----------------- 55 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~-------~~~~~-----~~~~-----------t~~~~~~~----------------- 55 (153)
....|+++|.+|+||||++..+. +.+.. ...+ ..+.....
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 35688899999999999988885 22210 0000 00111000
Q ss_pred EEEcCEEEEEEEcCCCCCch-hchH-----hhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCce-EEEEEeCC
Q 031797 56 VEYKNISFTVWDVGGQDKIR-PLWR-----HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQ 128 (153)
Q Consensus 56 ~~~~~~~~~i~d~~g~~~~~-~~~~-----~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~~K~ 128 (153)
....+..+.++||||..... .... .....++.+++|+|+............+.. .++ .-+|+||.
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~~~~f~~--------~l~i~gvVlnK~ 250 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNE--------ALPLTGVVLTKV 250 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHHHHHHHH--------HSCCCCEEEECT
T ss_pred HHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHHHHHHhc--------cCCCeEEEEecC
Confidence 01135789999999965432 1211 123467899999998744333222221111 233 34689999
Q ss_pred CccccC-CHHHHHHHhCCC
Q 031797 129 DLPNAM-NAAEITDKLGLH 146 (153)
Q Consensus 129 Dl~~~~-~~~~~~~~~~~~ 146 (153)
|..... ....+.+..++|
T Consensus 251 D~~~~~g~~l~i~~~~~~P 269 (433)
T 2xxa_A 251 DGDARGGAALSIRHITGKP 269 (433)
T ss_dssp TSSSCCTHHHHHHHHHCCC
T ss_pred CCCccHHHHHHHHHHHCCC
Confidence 986443 344566666654
No 228
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.78 E-value=2.5e-06 Score=64.52 Aligned_cols=83 Identities=30% Similarity=0.342 Sum_probs=48.5
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCCccccCCceeeEEEEE----EEcCEEEEEEEcCCCCC--chhch--------Hh
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETV----EYKNISFTVWDVGGQDK--IRPLW--------RH 80 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~i~d~~g~~~--~~~~~--------~~ 80 (153)
..+..|+++|.+|+||||+.+++...-.....++..+....+ ........+||..|.+. ....+ ..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999986432111112222111000 00113345678777632 22222 45
Q ss_pred hhcCCCEEEEEEECCCc
Q 031797 81 YFQNTQGLIFVVDSNDR 97 (153)
Q Consensus 81 ~~~~~~~ii~v~d~~~~ 97 (153)
++....+.++|+|.++.
T Consensus 117 ~l~~~~G~~vV~D~tn~ 133 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNT 133 (469)
T ss_dssp HHHTTCCSEEEEESCCC
T ss_pred HHHhCCCCEEEEeCCCC
Confidence 56667888999999876
No 229
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.69 E-value=2.4e-05 Score=51.62 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 031797 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
.+++++|++|+|||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988653
No 230
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.66 E-value=3e-05 Score=54.93 Aligned_cols=68 Identities=15% Similarity=0.082 Sum_probs=43.0
Q ss_pred EEEcCCCC-CchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCCHHHH
Q 031797 65 VWDVGGQD-KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI 139 (153)
Q Consensus 65 i~d~~g~~-~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~~~~~ 139 (153)
+-..|||. .........++.+|+++.|+|+.++.+... ..+..++ .+.|+++|+||+|+.+....+.+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~ 71 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQW 71 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHHHHHH
Confidence 44578885 445566677899999999999988766542 1122222 36899999999999875433333
No 231
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.65 E-value=2.7e-05 Score=51.25 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhc
Q 031797 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
..-++++|++|+|||||++.+.+
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999999875
No 232
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.64 E-value=0.0014 Score=46.63 Aligned_cols=86 Identities=12% Similarity=0.153 Sum_probs=54.6
Q ss_pred CEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEE-EEEeCCCccccCCHHH
Q 031797 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL-VFANKQDLPNAMNAAE 138 (153)
Q Consensus 60 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ii-vv~~K~Dl~~~~~~~~ 138 (153)
...+.++|+|+...... ....+..+|.++++...+ ..+.......+..+.......+.+++ +|.|+.+.. ...++
T Consensus 156 ~yD~ViiD~p~~~~~~~-~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~--~~~~~ 231 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGG-FAAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT--DEVDR 231 (307)
T ss_dssp SCSEEEEEECCSSCCGG-GGGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC--HHHHH
T ss_pred cCCEEEEeCCCccchHH-HHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH--HHHHH
Confidence 36789999987543322 224567899999998764 54555554444444332223566765 899999843 34667
Q ss_pred HHHHhCCCccc
Q 031797 139 ITDKLGLHSLR 149 (153)
Q Consensus 139 ~~~~~~~~~~~ 149 (153)
+.+.++.+.+.
T Consensus 232 ~~~~~g~~v~~ 242 (307)
T 3end_A 232 FCKETNFRRLA 242 (307)
T ss_dssp HHHHHTCCEEE
T ss_pred HHHHcCCCcee
Confidence 77778776653
No 233
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.63 E-value=3.5e-05 Score=53.19 Aligned_cols=32 Identities=25% Similarity=0.472 Sum_probs=21.4
Q ss_pred HHHhhcccccccEEEEEcCCCCcHHHHHHHHh
Q 031797 7 KLFSKLFAKKEMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 7 ~~~~~~~~~~~~~i~i~G~~~~GKtsli~~~~ 38 (153)
+.+-+....+...++++|++|+||||+++.+.
T Consensus 17 ~~~~~~~~~~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 17 NLYFQSMASKLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp ---------CCCEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHhcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 33333444567889999999999999999987
No 234
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.61 E-value=3.3e-05 Score=51.70 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=19.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhc
Q 031797 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
...++++||+|+|||||++.+.+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35689999999999999999875
No 235
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.56 E-value=6e-05 Score=49.44 Aligned_cols=32 Identities=16% Similarity=0.180 Sum_probs=24.9
Q ss_pred HhhcccccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 9 FSKLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 9 ~~~~~~~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
...........++++|++|+|||||++.+.+.
T Consensus 30 ~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 30 VHNFNPEEGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp HHSCCGGGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred HHhccccCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 33444445678999999999999999988653
No 236
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.51 E-value=5.3e-05 Score=51.67 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=21.9
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
+..--++++||+|+|||||++.+.+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 44567899999999999999998764
No 237
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.51 E-value=5.3e-05 Score=50.11 Aligned_cols=21 Identities=38% Similarity=0.532 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031797 19 RILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~ 39 (153)
-++++|++|+||||+++.+.+
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999875
No 238
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.50 E-value=0.00081 Score=44.69 Aligned_cols=84 Identities=12% Similarity=0.074 Sum_probs=54.3
Q ss_pred CEEEEEEEcCCCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCC--CCCceEEEEEeCCCcccc--CC
Q 031797 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNA--MN 135 (153)
Q Consensus 60 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~iivv~~K~Dl~~~--~~ 135 (153)
...+.++|+|+.. .......+..+|.+++++..+.. + ......+..+ .... .++.++.+|+|+.|.... ..
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l-~~~~~~~~~~~~~vv~N~~~~~~~~~~~ 149 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTV-LEAQAYSRKVEARFLITRKIEMATMLNV 149 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHH-HTTSCGGGCCEEEEEECSBCTTEEEEHH
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHH-HHHHHhCCCCcEEEEEeccCCCchHHHH
Confidence 4689999999875 23344556779999999987643 3 4444433333 2221 356788999999996433 34
Q ss_pred HHHHHHHhCCCcc
Q 031797 136 AAEITDKLGLHSL 148 (153)
Q Consensus 136 ~~~~~~~~~~~~~ 148 (153)
..+..++++.+.+
T Consensus 150 ~~~~l~~~~~~vl 162 (206)
T 4dzz_A 150 LKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHTCCBC
T ss_pred HHHHHHHcCCcee
Confidence 5566666776655
No 239
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.49 E-value=6.2e-05 Score=50.05 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 031797 20 ILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 20 i~i~G~~~~GKtsli~~~~~~ 40 (153)
|+++||+|+|||||+++++..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999753
No 240
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.49 E-value=6e-05 Score=50.29 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
.--++++|++|+||||+++.+.+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 456899999999999999998753
No 241
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.48 E-value=0.00015 Score=54.50 Aligned_cols=27 Identities=15% Similarity=0.112 Sum_probs=22.8
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..+..-|.|+|+.++|||+|+|++++.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 345577899999999999999999863
No 242
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.48 E-value=6.1e-05 Score=50.67 Aligned_cols=28 Identities=25% Similarity=0.275 Sum_probs=21.7
Q ss_pred ccccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 13 FAKKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
.-...--++++|++|+|||||++.+.+-
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3345567899999999999999998763
No 243
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.47 E-value=8.3e-05 Score=49.07 Aligned_cols=25 Identities=28% Similarity=0.234 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
+.-.++++|++|+||||+++.+.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3457999999999999999998764
No 244
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.46 E-value=9.5e-05 Score=49.58 Aligned_cols=26 Identities=15% Similarity=0.330 Sum_probs=22.1
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
.+..-++++||+|+|||||++.+...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 35567899999999999999999753
No 245
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.46 E-value=6.2e-05 Score=49.16 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=19.1
Q ss_pred cccEEEEEcCCCCcHHHHHHHHh
Q 031797 16 KEMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~ 38 (153)
..--++++|++|+|||||++.+.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 44568999999999999999543
No 246
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.45 E-value=9.3e-05 Score=49.83 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=22.2
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
....-++++||+|+||||+++.+...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 44567999999999999999999764
No 247
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.45 E-value=6.9e-05 Score=50.94 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=21.5
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
...-.++++|++|+|||||++.+.+.
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34567899999999999999998763
No 248
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.44 E-value=8.5e-05 Score=49.99 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=21.8
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
.....+.|+|++|+|||||++.+.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999988753
No 249
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.39 E-value=9.2e-05 Score=50.98 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=21.8
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
...-.+.++|++|+|||||++.+.+-
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 34457899999999999999998764
No 250
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.38 E-value=8.8e-05 Score=54.44 Aligned_cols=58 Identities=21% Similarity=0.190 Sum_probs=40.7
Q ss_pred CCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 70 g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
..+.|......+.+.++++++|+|++++. ......+.+.+ .+.|+++|+||+|+.+..
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~--~~~~~~l~~~~-----~~~p~ilV~NK~DL~~~~ 112 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN--GSWLPGLHRFV-----GNNKVLLVGNKADLIPKS 112 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH--HHCCTTHHHHS-----SSSCEEEEEECGGGSCTT
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc--ccHHHHHHHHh-----CCCcEEEEEEChhcCCcc
Confidence 45678888888889999999999998742 11111122221 368999999999997543
No 251
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.38 E-value=0.00021 Score=46.58 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=22.4
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
......+++.|++|+|||++++.+...
T Consensus 40 ~~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 40 RRTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 344577999999999999999988653
No 252
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.34 E-value=0.00013 Score=48.97 Aligned_cols=25 Identities=36% Similarity=0.339 Sum_probs=21.0
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
.....+.++|++|+||||+++.+.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998865
No 253
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.34 E-value=0.00012 Score=49.12 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=21.2
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
....-++++|++||||||+++.+..
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999999864
No 254
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.33 E-value=0.00012 Score=50.08 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=21.1
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..-.+.++|++|+|||||++.+.+-
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3446889999999999999998764
No 255
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.33 E-value=0.00013 Score=47.24 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=22.4
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcCC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~~ 41 (153)
...-.++++|+.|+|||||++.+.+.-
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 445578999999999999999987643
No 256
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.32 E-value=0.00013 Score=48.65 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=21.1
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
.....|+++|++|+||||+++.+..
T Consensus 16 ~~~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 16 RFPGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp CCSSCEEEECSTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3356799999999999999998853
No 257
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.32 E-value=0.00016 Score=48.25 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
....++++|++|+||||+++.+.+.
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999998654
No 258
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.30 E-value=0.00016 Score=46.64 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=18.4
Q ss_pred cEEEEEcCCCCcHHHHHHHH
Q 031797 18 MRILMVGLDAAGKTTILYKL 37 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~ 37 (153)
.-|+++|++|+||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999988
No 259
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.29 E-value=0.00015 Score=47.10 Aligned_cols=22 Identities=41% Similarity=0.457 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 031797 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~ 39 (153)
..|+++|++|+||||+.+.+.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998865
No 260
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.29 E-value=0.00015 Score=50.15 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 031797 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
-.+.++|++|+|||||++.+.+-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999998764
No 261
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.29 E-value=0.0001 Score=54.16 Aligned_cols=58 Identities=21% Similarity=0.197 Sum_probs=41.2
Q ss_pred CCCCchhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 70 g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
.++.|......+.++++++++|+|++++.+- ....+...+ .+.|+++|+||+|+.+..
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~s--~~~~l~~~l-----~~~piilV~NK~DLl~~~ 114 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNGS--FIPGLPRFA-----ADNPILLVGNKADLLPRS 114 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGGG--CCSSHHHHC-----TTSCEEEEEECGGGSCTT
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCCc--hhhHHHHHh-----CCCCEEEEEEChhcCCCc
Confidence 4778888888888999999999999986531 111122222 368999999999997653
No 262
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.28 E-value=0.0002 Score=47.70 Aligned_cols=28 Identities=36% Similarity=0.418 Sum_probs=22.7
Q ss_pred cccccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 12 LFAKKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 12 ~~~~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
.....+..|+++|++|+||||+.+.+..
T Consensus 15 ~~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 15 VPRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp -CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445668899999999999999988853
No 263
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.28 E-value=0.00017 Score=46.90 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 031797 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~ 39 (153)
..|+++|++|+||||+.+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999875
No 264
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.28 E-value=0.00015 Score=47.86 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031797 19 RILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~ 39 (153)
.++++|++|+||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999865
No 265
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.28 E-value=0.00015 Score=51.18 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..-.++++|++|+|||||++.+.+-
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 3456899999999999999998764
No 266
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.27 E-value=0.00015 Score=50.73 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..-.++++|++|+|||||++.+.+-
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999998764
No 267
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.27 E-value=0.00021 Score=46.49 Aligned_cols=24 Identities=13% Similarity=0.360 Sum_probs=20.5
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhc
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
....++++|++|+||||+++.+.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999988753
No 268
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.26 E-value=0.00016 Score=49.05 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
.-.++++|++|+|||||++.+.+-
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999998764
No 269
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.26 E-value=0.00018 Score=49.63 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..-.++++|++|+|||||++.+.+-
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999998764
No 270
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.25 E-value=0.0002 Score=47.76 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=20.8
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhc
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
....++++|++|+||||+++.+.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998854
No 271
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.25 E-value=0.00016 Score=50.56 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=22.1
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
-...-.++++|++|+||||+++.+.+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHH
Confidence 34556799999999999999999865
No 272
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.25 E-value=0.00018 Score=52.59 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCC
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~ 41 (153)
.-.++++|++|+|||||+|.+.+..
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCEEEEECCCCccHHHHHHHHhccc
Confidence 4578999999999999999998754
No 273
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.25 E-value=0.00018 Score=46.44 Aligned_cols=21 Identities=33% Similarity=0.357 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031797 19 RILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~ 39 (153)
.|+++|++|+||||+.+.+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998853
No 274
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.24 E-value=0.00017 Score=50.63 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..-.+.++|++|+|||||++.+.+-
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3456899999999999999999764
No 275
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.24 E-value=0.00019 Score=49.58 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=21.9
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
...-.++++|++|+|||||++.+.+-
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34457899999999999999998764
No 276
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.24 E-value=0.00017 Score=50.30 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..-.+.++|++|+|||||++.+.+-
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456899999999999999998764
No 277
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.23 E-value=0.00025 Score=46.71 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=22.5
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..+...|+++|++|+||||+.+.+...
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 345678999999999999999888543
No 278
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.23 E-value=0.00026 Score=46.08 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=22.4
Q ss_pred ccccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 13 FAKKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
.......+++.|++|+|||+++..+..
T Consensus 39 ~~~~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 39 SRRTKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp TSSSSCEEEEESCGGGCHHHHHHHHHH
T ss_pred hCCCCCceEEECCCCCCHHHHHHHHHH
Confidence 334567899999999999999988865
No 279
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.22 E-value=0.0002 Score=49.67 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..-.++++|++|+|||||++.+.+-
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999998764
No 280
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.22 E-value=0.00023 Score=47.44 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=20.7
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhc
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
....|+++|++|+||||+.+.+..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999998853
No 281
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.22 E-value=0.00021 Score=48.97 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..-.++++|++|+|||||++.+.+-
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456899999999999999998764
No 282
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.22 E-value=0.00019 Score=50.29 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..-.++++|++|+|||||++.+.+-
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 3456899999999999999998764
No 283
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.20 E-value=0.00019 Score=49.49 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..-.+.++|++|+|||||++.+.+-
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456899999999999999998764
No 284
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.20 E-value=0.00022 Score=47.99 Aligned_cols=21 Identities=38% Similarity=0.559 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHh
Q 031797 18 MRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~ 38 (153)
++|+++|++|+||||+.+.+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 369999999999999999884
No 285
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.20 E-value=0.00019 Score=47.80 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031797 19 RILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~ 39 (153)
.++++|++|+||||+++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 578999999999999998865
No 286
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.20 E-value=0.0002 Score=49.73 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..-.++++|++|+|||||++.+.+-
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3456899999999999999998764
No 287
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.20 E-value=0.00021 Score=46.94 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..-++++|++|+|||||++++...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 346899999999999999999753
No 288
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.19 E-value=0.00025 Score=47.33 Aligned_cols=26 Identities=31% Similarity=0.463 Sum_probs=21.9
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
......++++|++|+||||+++.+.+
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35567899999999999999988754
No 289
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.19 E-value=0.00022 Score=46.50 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 031797 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~ 39 (153)
.-|+++|++|+||||+.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 290
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.19 E-value=0.00021 Score=49.86 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..-.+.++|++|+|||||++.+.+-
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4456899999999999999998764
No 291
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.19 E-value=0.00023 Score=49.78 Aligned_cols=26 Identities=27% Similarity=0.194 Sum_probs=22.0
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
...-.++++|++|+|||||++.+.+-
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34457899999999999999998764
No 292
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.19 E-value=0.00021 Score=49.60 Aligned_cols=25 Identities=28% Similarity=0.217 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..-.+.++|++|+|||||++.+.+-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456889999999999999999874
No 293
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.19 E-value=0.00027 Score=47.83 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhc
Q 031797 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
...|.++|++|+||||+.+.+.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998854
No 294
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.18 E-value=0.00073 Score=48.37 Aligned_cols=52 Identities=13% Similarity=0.128 Sum_probs=37.2
Q ss_pred hhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccC
Q 031797 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (153)
Q Consensus 80 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~ 134 (153)
....++|.+++|+|+.++..-....+.+...... .++|.++|+||+|+.++.
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~ 133 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQ 133 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCH
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchh
Confidence 3578899999999998665444444433333333 468899999999998763
No 295
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.18 E-value=0.00024 Score=47.87 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 031797 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~ 39 (153)
++|+++|++|+||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998843
No 296
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.18 E-value=0.00027 Score=46.58 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=20.5
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhc
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
....|+++|++|+||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999988853
No 297
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.18 E-value=0.00026 Score=46.48 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=19.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHh
Q 031797 17 EMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~ 38 (153)
...|++.|++|+||||+.+.+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAM 24 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999998874
No 298
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.17 E-value=0.00023 Score=49.96 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=21.7
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..-.++++|++|+|||||++.+.+-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4456899999999999999999875
No 299
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.17 E-value=0.00025 Score=50.08 Aligned_cols=25 Identities=40% Similarity=0.510 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..-.++++|++|+|||||++.+.+-
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3456899999999999999998764
No 300
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.16 E-value=0.00027 Score=46.34 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=19.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHh
Q 031797 17 EMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~ 38 (153)
...|+++|++|+||||+.+.+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999884
No 301
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.16 E-value=0.0004 Score=50.02 Aligned_cols=29 Identities=34% Similarity=0.200 Sum_probs=23.2
Q ss_pred hhcccccccEEEEEcCCCCcHHHHHHHHh
Q 031797 10 SKLFAKKEMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 10 ~~~~~~~~~~i~i~G~~~~GKtsli~~~~ 38 (153)
.......++-+.++|++|+||||+++.+.
T Consensus 85 ~~~~~~~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 85 GKPEPKVPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp TCCCCCCCEEEEEECCTTSSHHHHHHHHH
T ss_pred ccCCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 33334567789999999999999998874
No 302
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.16 E-value=0.00026 Score=48.99 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=20.9
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
.+.+.|.|.|++|+||||+.+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999988743
No 303
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.15 E-value=0.00029 Score=47.64 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=20.8
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhc
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
....|+++|++|+||||+.+.+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988743
No 304
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.15 E-value=0.00026 Score=49.81 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..-.++++|++|+|||||++.+.+-
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4456899999999999999998764
No 305
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.15 E-value=0.00011 Score=51.46 Aligned_cols=59 Identities=10% Similarity=0.079 Sum_probs=37.9
Q ss_pred cCCCCC-chhchHhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCccccCC
Q 031797 68 VGGQDK-IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (153)
Q Consensus 68 ~~g~~~-~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~~~ 135 (153)
.|||.. ........+..+|+++.|+|+.++.+.... .+. . . +.|.++|+||+|+.+...
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~------~l~-l-l-~k~~iivlNK~DL~~~~~ 63 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY------GVD-F-S-RKETIILLNKVDIADEKT 63 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT------TSC-C-T-TSEEEEEEECGGGSCHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh------HHH-h-c-CCCcEEEEECccCCCHHH
Confidence 477643 334556678999999999999877555321 111 1 1 689999999999987543
No 306
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.15 E-value=0.00034 Score=46.01 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=21.9
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
..+...|+++|.+|+||||+++.+..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 34567899999999999999988753
No 307
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.15 E-value=0.00028 Score=50.43 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=22.4
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
-++.-.++|+|++|+|||||++.+.+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhh
Confidence 35567899999999999999998864
No 308
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.15 E-value=0.00025 Score=48.60 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=20.6
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHh
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~ 38 (153)
+..--++++|++|+|||||++.+.
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 345678999999999999999886
No 309
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.14 E-value=0.00017 Score=48.75 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..-.+.++|++|+|||||++.+.+-
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999999775
No 310
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.14 E-value=0.00024 Score=49.42 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=21.2
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..-.+.++|++|+|||||++.+.+-
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3446889999999999999998764
No 311
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.13 E-value=0.00031 Score=46.10 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHh
Q 031797 17 EMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~ 38 (153)
...|+++|++|+||||+.+.+.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999885
No 312
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.13 E-value=0.00025 Score=49.70 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..-.+.++|++|+|||||++.+.+-
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4456889999999999999998764
No 313
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.13 E-value=0.0003 Score=46.02 Aligned_cols=24 Identities=33% Similarity=0.328 Sum_probs=20.7
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHh
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~ 38 (153)
.+...|+++|++|+||||+.+.+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHH
Confidence 345679999999999999999885
No 314
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.13 E-value=0.00029 Score=46.95 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 031797 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~ 39 (153)
..|+++|++|+||||+.+.+.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999998865
No 315
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.13 E-value=0.00025 Score=48.00 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhc
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
..--++++|++|+|||||++.+.+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 445789999999999999999976
No 316
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.13 E-value=0.00037 Score=47.40 Aligned_cols=22 Identities=32% Similarity=0.276 Sum_probs=18.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 031797 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~ 39 (153)
.-|+++|+|||||+|....+..
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999888854
No 317
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.12 E-value=0.00032 Score=48.35 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=21.7
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
.....+.++|++|+||||+++.+.+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998865
No 318
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.11 E-value=0.00025 Score=50.51 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCC
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~ 41 (153)
.-.++++|++|+|||||++.+.+..
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccc
Confidence 3468999999999999999998753
No 319
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.10 E-value=9.3e-05 Score=53.00 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
.-.++++|++|+|||||+|.+.+.
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-
T ss_pred CCEEEEECCCCCCHHHHHHHhccc
Confidence 468999999999999999999765
No 320
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.10 E-value=0.00035 Score=50.15 Aligned_cols=26 Identities=27% Similarity=0.181 Sum_probs=22.4
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
.....-+.|+|++|+|||||++.+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 35668899999999999999998854
No 321
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.10 E-value=0.00051 Score=49.10 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=21.8
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
.....+.|+|++|+|||||++.+.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5567899999999999999998865
No 322
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.09 E-value=0.00038 Score=48.00 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.0
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
..+..|+++|++|+||||+.+.+..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999998853
No 323
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.09 E-value=0.00038 Score=46.23 Aligned_cols=27 Identities=30% Similarity=0.265 Sum_probs=22.5
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..+...|+++|++|+||||+.+.+...
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 355678999999999999999988653
No 324
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.09 E-value=0.00034 Score=49.01 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCC
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~~ 41 (153)
.-.++++|++|+|||||++.+.+-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4478999999999999999987753
No 325
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.09 E-value=0.00034 Score=45.99 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031797 19 RILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~ 39 (153)
.|+++|++|+||||+++.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988853
No 326
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.08 E-value=0.00035 Score=49.51 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=21.6
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
....-++++|++|+||||+++.+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4467899999999999999999853
No 327
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.08 E-value=0.00036 Score=46.29 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031797 19 RILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~ 39 (153)
.|+++|++|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999988854
No 328
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.08 E-value=0.00035 Score=47.49 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.1
Q ss_pred cccEEEEEcCCCCcHHHHHHHHh
Q 031797 16 KEMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~ 38 (153)
+...|+++|++|+||||+.+.+.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999885
No 329
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.08 E-value=0.00044 Score=46.65 Aligned_cols=33 Identities=12% Similarity=0.200 Sum_probs=23.9
Q ss_pred HHHHHhhcccccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 5 FTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 5 ~~~~~~~~~~~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
+..+..+ .++.-.+++.||+|+|||+++.++.+
T Consensus 48 l~~~~~~--iPkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 48 LKSFLKG--TPKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHT--CTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHhc--CCcccEEEEECCCCCCHHHHHHHHHH
Confidence 3444443 23345699999999999999888764
No 330
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.07 E-value=0.00033 Score=47.45 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=20.7
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhc
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
....|+++|++|+||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999988853
No 331
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.06 E-value=0.00062 Score=47.87 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 031797 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
-.++++|++|+|||||++.+.+.
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 34999999999999999998763
No 332
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.06 E-value=0.00046 Score=46.15 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=22.0
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
.....++++|++|+||||+++.+.+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34568999999999999999998664
No 333
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.05 E-value=0.00041 Score=46.37 Aligned_cols=22 Identities=27% Similarity=0.170 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 031797 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~ 39 (153)
+.|.++|++|+||||+.+.+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999865
No 334
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.05 E-value=0.00033 Score=49.98 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHh
Q 031797 17 EMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~ 38 (153)
...++++|++|+|||||+|.+.
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999998
No 335
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.05 E-value=0.0004 Score=45.68 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=19.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHh
Q 031797 17 EMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~ 38 (153)
+..|+++|++|+||||+.+.+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999998874
No 336
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.05 E-value=0.00022 Score=48.61 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=16.4
Q ss_pred cccEEEEEcCCCCcHHHHHHHHh
Q 031797 16 KEMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~ 38 (153)
...-++++|++|+||||+++.+.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34578999999999999999988
No 337
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.05 E-value=0.00042 Score=46.24 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhc
Q 031797 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
...|++.|++|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999998854
No 338
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.04 E-value=0.0004 Score=46.82 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 031797 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~ 39 (153)
+.|+++|+|||||+|...++..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999988854
No 339
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.03 E-value=0.00048 Score=45.79 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=21.6
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
+...|+++|++|+||||+++.+...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3568999999999999999988653
No 340
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.02 E-value=0.00048 Score=45.43 Aligned_cols=23 Identities=35% Similarity=0.320 Sum_probs=20.4
Q ss_pred cccEEEEEcCCCCcHHHHHHHHh
Q 031797 16 KEMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~ 38 (153)
+...|+++|++|+||||+.+.+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999998885
No 341
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.02 E-value=0.00033 Score=51.21 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
.-+++|+|++|+|||||++.+.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999988653
No 342
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.02 E-value=0.00019 Score=47.06 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031797 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~ 40 (153)
.+.|+|++|+|||||++.+.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999998753
No 343
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.01 E-value=0.0007 Score=46.73 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 031797 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..++++|++|+|||||++.+.+.
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 34999999999999999998763
No 344
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.01 E-value=0.00053 Score=45.66 Aligned_cols=24 Identities=33% Similarity=0.295 Sum_probs=20.8
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHh
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~ 38 (153)
.+...|+++|++|+||||+.+.+.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 445689999999999999998885
No 345
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.00 E-value=0.00067 Score=47.34 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=23.3
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
......+++.|++|+|||+++..+.+.
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 566789999999999999999988653
No 346
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.00 E-value=0.00042 Score=49.22 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..-.++++|++|+|||||++.+.+-
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3456899999999999999998764
No 347
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.00 E-value=0.00047 Score=50.38 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=20.8
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhc
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
..=.++|+|++|+||||+++.+.+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 334899999999999999999865
No 348
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.00 E-value=0.00045 Score=46.53 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 031797 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~ 39 (153)
++|+++|++|+||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999988853
No 349
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.99 E-value=0.00072 Score=45.82 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhc
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
....+++.|++|+|||++++.+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999998864
No 350
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.99 E-value=0.00028 Score=50.53 Aligned_cols=26 Identities=35% Similarity=0.292 Sum_probs=22.0
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
...-.+.++|++|+|||||++.+.+-
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcC
Confidence 34567899999999999999988763
No 351
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.99 E-value=0.00052 Score=46.40 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=20.6
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhc
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
+...|+++|++|+||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999988843
No 352
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.99 E-value=0.00056 Score=47.42 Aligned_cols=24 Identities=29% Similarity=0.221 Sum_probs=21.3
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHh
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~ 38 (153)
.....|.|+|++|+||||+++.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 445789999999999999999887
No 353
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.98 E-value=0.00029 Score=46.03 Aligned_cols=23 Identities=26% Similarity=0.216 Sum_probs=16.0
Q ss_pred cccEEEEEcCCCCcHHHHHHHHh
Q 031797 16 KEMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~ 38 (153)
+...|+++|.+|+||||+.+.+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999885
No 354
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.98 E-value=0.00053 Score=45.90 Aligned_cols=24 Identities=38% Similarity=0.436 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhc
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
+...|+++|++|+||||+++.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998853
No 355
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.98 E-value=0.00041 Score=50.72 Aligned_cols=25 Identities=28% Similarity=0.301 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..--++++||+|+|||||++.+.+-
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcC
Confidence 3456899999999999999998774
No 356
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.97 E-value=0.00059 Score=45.63 Aligned_cols=24 Identities=38% Similarity=0.337 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhc
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
+...|+++|.+|+||||+.+.+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999998853
No 357
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.96 E-value=0.00028 Score=45.05 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..-.++++|++|+|||+|++.+.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4557899999999999999998763
No 358
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.96 E-value=0.00059 Score=44.58 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhc
Q 031797 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
...+.++|++|+||||++.++..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999864
No 359
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.96 E-value=0.00046 Score=50.54 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=21.2
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..--+.++|++|+|||||++.+.+-
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcC
Confidence 3456889999999999999998764
No 360
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.95 E-value=0.00044 Score=44.99 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031797 19 RILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~ 39 (153)
+|+++|++|+||||+.+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999988743
No 361
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.95 E-value=0.0006 Score=45.07 Aligned_cols=23 Identities=30% Similarity=0.229 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhc
Q 031797 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
...|+++|++|+||||+.+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988853
No 362
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.95 E-value=0.00064 Score=45.41 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=21.6
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
.....+.++|++|+||||+++.+.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999988853
No 363
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.95 E-value=0.00063 Score=48.63 Aligned_cols=125 Identities=18% Similarity=0.187 Sum_probs=67.4
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC------Ccc--c---cCC-------------ceeeEEEEE---------------
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG------EIV--T---TIP-------------TIGFNVETV--------------- 56 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~------~~~--~---~~~-------------t~~~~~~~~--------------- 56 (153)
..-.++++|++|+||||+++.+.+. +.. . ... ..+......
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999988631 110 0 000 011110000
Q ss_pred EEcCEEEEEEEcCCCCCchh-ch-----------HhhhcCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEE
Q 031797 57 EYKNISFTVWDVGGQDKIRP-LW-----------RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124 (153)
Q Consensus 57 ~~~~~~~~i~d~~g~~~~~~-~~-----------~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv 124 (153)
...+....+.|++|...... .. .......+.+++++|........+....+..... . -+++
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~~~~~~~~~~------~-t~ii 253 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVG------L-TGVI 253 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHC------C-SEEE
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHHHHHHHHHcC------C-cEEE
Confidence 00234567889998543211 10 1123357778889998755444333333332221 1 4678
Q ss_pred EeCCCcccc-CCHHHHHHHhCCCc
Q 031797 125 ANKQDLPNA-MNAAEITDKLGLHS 147 (153)
Q Consensus 125 ~~K~Dl~~~-~~~~~~~~~~~~~~ 147 (153)
.||.|.... -....+.+.+++|.
T Consensus 254 vTh~d~~a~gg~~l~i~~~~~~pi 277 (304)
T 1rj9_A 254 VTKLDGTAKGGVLIPIVRTLKVPI 277 (304)
T ss_dssp EECTTSSCCCTTHHHHHHHHCCCE
T ss_pred EECCcccccccHHHHHHHHHCCCe
Confidence 899886532 34556666666653
No 364
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.94 E-value=0.00063 Score=49.95 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=21.5
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
...-.++++|++|+||||+++.+.+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3455799999999999999999875
No 365
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.93 E-value=0.0006 Score=43.90 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031797 19 RILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~ 39 (153)
+|++.|.+|+||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988854
No 366
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.93 E-value=0.00082 Score=47.10 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=22.3
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
.....+++.|++|+|||++++.+.+.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45677999999999999999998653
No 367
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.93 E-value=0.0005 Score=50.20 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=21.2
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..-.+.++|++|+|||||++.+.+-
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3456889999999999999998764
No 368
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.93 E-value=0.0005 Score=49.68 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=21.7
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..-.++++|++|+|||||++.+.+-
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999998764
No 369
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.92 E-value=0.00051 Score=47.69 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031797 19 RILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~ 39 (153)
-++|+|++|+||||+...+..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998853
No 370
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.92 E-value=0.00072 Score=47.99 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=21.4
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHh
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~ 38 (153)
..+...|.|+|++|+|||||++.+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3567889999999999999998764
No 371
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.92 E-value=0.00048 Score=50.38 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=22.4
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
...-.++++|++|+|||||++.+.+-
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhc
Confidence 34568999999999999999998764
No 372
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.91 E-value=0.0012 Score=43.93 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 031797 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~ 39 (153)
..+++.|++|+|||+|+..+.+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999988865
No 373
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.90 E-value=0.00053 Score=50.12 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..-.+.++|++|+|||||++.+.+-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCC
Confidence 3456889999999999999998764
No 374
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.90 E-value=0.00054 Score=50.44 Aligned_cols=25 Identities=24% Similarity=0.293 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..--+.++|++|+|||||++.+.+-
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcC
Confidence 3456899999999999999999764
No 375
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.90 E-value=0.00055 Score=50.09 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..-.+.++|++|+|||||++.+.+-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcC
Confidence 3456889999999999999998764
No 376
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.90 E-value=0.00052 Score=49.55 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 031797 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
-.++++||+|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999998753
No 377
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.89 E-value=0.00061 Score=47.14 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhc
Q 031797 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
+..++++|++|+|||++++.+.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 45699999999999999999865
No 378
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.88 E-value=0.00076 Score=46.07 Aligned_cols=25 Identities=36% Similarity=0.400 Sum_probs=21.4
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
.....|+++|++|+||||+.+.+..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999988853
No 379
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.88 E-value=0.0011 Score=46.39 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031797 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~ 40 (153)
.++++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 4999999999999999998763
No 380
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.87 E-value=0.00054 Score=51.10 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=21.3
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
...=.++|+|++|+||||+++.+++
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHh
Confidence 3444689999999999999999876
No 381
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.87 E-value=0.00072 Score=46.48 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=20.4
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHh
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~ 38 (153)
.+++.+++.|++|+||||+.+.+.
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 456889999999999999999885
No 382
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.86 E-value=0.00075 Score=46.05 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=22.4
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
.+..-+.|.|+.|+||||+++.+.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 55678999999999999999988653
No 383
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.86 E-value=0.0006 Score=50.10 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=21.2
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..-.+.++|++|+|||||++.+.+-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcC
Confidence 3346889999999999999998764
No 384
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.86 E-value=0.00061 Score=50.03 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..-.+.++|++|+|||||++.+.+-
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 3456889999999999999998764
No 385
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.85 E-value=0.0008 Score=48.61 Aligned_cols=25 Identities=40% Similarity=0.594 Sum_probs=21.9
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
.+..-++++|++|+||||+++.+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998864
No 386
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.85 E-value=0.00072 Score=45.91 Aligned_cols=21 Identities=33% Similarity=0.341 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031797 19 RILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~ 39 (153)
.|+++|++|+||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988853
No 387
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.83 E-value=0.0009 Score=43.88 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=19.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhc
Q 031797 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
...|+++|++|+||||+.+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988853
No 388
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.83 E-value=0.00067 Score=45.81 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=20.5
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhc
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
..--++++|++|+|||||+..+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 345688999999999999999874
No 389
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.83 E-value=0.00088 Score=47.80 Aligned_cols=24 Identities=46% Similarity=0.587 Sum_probs=20.8
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhc
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
..--++++|++|+||||+++.+.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 446789999999999999998864
No 390
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.83 E-value=0.00081 Score=46.81 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhc
Q 031797 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
...|+++|.+|+||||+.+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999988853
No 391
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.82 E-value=0.00074 Score=44.14 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031797 19 RILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~ 39 (153)
-.+|+|++|+||||++..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998843
No 392
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.82 E-value=0.00053 Score=47.54 Aligned_cols=26 Identities=38% Similarity=0.429 Sum_probs=21.8
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
...+..++++|++|+||||+.+.+..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998753
No 393
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.82 E-value=0.00063 Score=48.23 Aligned_cols=25 Identities=16% Similarity=0.001 Sum_probs=21.2
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
..+..+++.||+|+|||++++.+.+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4456788999999999999998864
No 394
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.81 E-value=0.0009 Score=45.09 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=20.8
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhc
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
+++.|+|+|++|+||||+.+.+..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998854
No 395
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.80 E-value=0.00086 Score=44.08 Aligned_cols=21 Identities=43% Similarity=0.444 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031797 19 RILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~ 39 (153)
.|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988854
No 396
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.79 E-value=0.00072 Score=51.71 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
....++++|++|+||||+++.+.+-
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3456999999999999999998763
No 397
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.79 E-value=0.00097 Score=43.51 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=20.6
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhc
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
+...|+++|++|+||||+.+.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999988854
No 398
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.78 E-value=0.0005 Score=50.05 Aligned_cols=25 Identities=24% Similarity=0.186 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..-.++++|++|+|||||++.+.+-
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcC
Confidence 3456899999999999999998764
No 399
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.77 E-value=0.0003 Score=47.18 Aligned_cols=21 Identities=43% Similarity=0.542 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031797 19 RILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~ 39 (153)
-|+|+|++|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999998854
No 400
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.76 E-value=0.0012 Score=43.89 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031797 19 RILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~ 39 (153)
.+++.|++|+|||+++..+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999998865
No 401
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.76 E-value=0.00097 Score=42.16 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=22.6
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
.....|++.|++|+|||++++.+...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 55678999999999999999988654
No 402
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.75 E-value=0.00089 Score=43.26 Aligned_cols=22 Identities=36% Similarity=0.404 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 031797 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~ 39 (153)
..|+++|++|+||||+.+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999988753
No 403
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.75 E-value=0.00098 Score=43.95 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031797 19 RILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~ 39 (153)
-|++.|++|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998854
No 404
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.74 E-value=0.00082 Score=49.68 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..-.+.++|++|+|||||++.+.+-
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 3457899999999999999998763
No 405
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.74 E-value=0.001 Score=48.72 Aligned_cols=23 Identities=30% Similarity=0.638 Sum_probs=21.0
Q ss_pred ccccEEEEEcCCCCcHHHHHHHH
Q 031797 15 KKEMRILMVGLDAAGKTTILYKL 37 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~ 37 (153)
.+..||+++|.+|+||||+++.+
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 56799999999999999998886
No 406
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.74 E-value=0.0011 Score=46.70 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.1
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHh
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~ 38 (153)
...+.|+|+|++|+||||+.+.+.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999998875
No 407
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.73 E-value=0.00063 Score=48.83 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 031797 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
--++++|+.|+|||||++.+.+.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 35789999999999999999865
No 408
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.73 E-value=0.0014 Score=46.53 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=22.1
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
.....+++.|++|+|||++++.+.+.
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHH
Confidence 44567999999999999999998753
No 409
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.71 E-value=0.00096 Score=43.66 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031797 19 RILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~ 39 (153)
.|+++|++|+||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999988743
No 410
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.69 E-value=0.00097 Score=44.93 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 031797 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~ 39 (153)
..+++.|++|+|||++++.+.+
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 411
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.69 E-value=0.0013 Score=45.30 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=21.3
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
.....+++.|++|+|||++++.+.+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3446799999999999999998865
No 412
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.67 E-value=0.00096 Score=47.16 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=20.8
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
...--++++|++|+|||||+..+.+
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 3445689999999999999998854
No 413
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.67 E-value=0.00088 Score=46.59 Aligned_cols=30 Identities=30% Similarity=0.256 Sum_probs=21.4
Q ss_pred hhcccccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 10 SKLFAKKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 10 ~~~~~~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
+.....+...|+|.|..|+||||+++.+..
T Consensus 17 ~~~~~~~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 17 ASSEGTRIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp ------CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred ccccccCceEEEEECCCCCCHHHHHHHHHH
Confidence 444456678899999999999999988754
No 414
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.66 E-value=0.00048 Score=50.24 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..-.+.++|++|+|||||++.+.+-
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3456889999999999999998764
No 415
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.66 E-value=0.0013 Score=42.45 Aligned_cols=22 Identities=23% Similarity=0.578 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 031797 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~ 39 (153)
-.|+++|.+|+||||+.+.+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988743
No 416
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.66 E-value=0.0014 Score=47.97 Aligned_cols=24 Identities=46% Similarity=0.587 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhc
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
..--++++|++|+||||+++.+.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 456799999999999999998864
No 417
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.66 E-value=0.0011 Score=44.48 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=21.5
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
+..--++++|++|+|||||+..+..
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3455789999999999999999976
No 418
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.65 E-value=0.0014 Score=46.38 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=20.7
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
.....+++.|++|+|||++++.+.+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999986643
No 419
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.64 E-value=0.0014 Score=46.25 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhc
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
....+++.|++|+|||++++.+.+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 457899999999999999999865
No 420
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.64 E-value=0.0012 Score=48.08 Aligned_cols=26 Identities=27% Similarity=0.231 Sum_probs=23.0
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
.+.-++.++|++|+|||||++.+.+.
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999999875
No 421
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.63 E-value=0.0012 Score=45.03 Aligned_cols=25 Identities=28% Similarity=0.203 Sum_probs=21.6
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
+..--++++|++|+|||||+..+..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3456789999999999999999876
No 422
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.63 E-value=0.001 Score=50.20 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=22.4
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
...-.++++|++|+|||||++.+.+-
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 35568999999999999999998764
No 423
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.62 E-value=0.0019 Score=48.40 Aligned_cols=27 Identities=22% Similarity=0.148 Sum_probs=23.2
Q ss_pred ccccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 13 FAKKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
-.+.+..+++.||||+|||++++.+.+
T Consensus 211 g~~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCCCeeEEECcCCCCHHHHHHHHHH
Confidence 335568899999999999999999875
No 424
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.61 E-value=0.0015 Score=49.72 Aligned_cols=24 Identities=46% Similarity=0.600 Sum_probs=20.8
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhc
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
...-++|+|++|+||||+++.+.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 456799999999999999998854
No 425
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.60 E-value=0.0016 Score=43.71 Aligned_cols=25 Identities=32% Similarity=0.607 Sum_probs=21.1
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
.....|+++|++|+||||+++.+..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999988743
No 426
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.60 E-value=0.0014 Score=41.71 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 031797 19 RILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~ 38 (153)
-.+|+|+.|+||||++..+.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 35899999999999999874
No 427
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.59 E-value=0.0018 Score=48.90 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=21.9
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
....-+++++|++|+|||++++.+..
T Consensus 198 r~~~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 198 RRTKNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CSSSCEEEEESCTTTTTHHHHHHHHH
T ss_pred ccCCCCeEEECCCCCCHHHHHHHHHH
Confidence 34566899999999999999988854
No 428
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.58 E-value=0.0018 Score=44.25 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.1
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhc
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
...-|++.|++|+||||+++.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999999998854
No 429
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.57 E-value=0.0019 Score=46.59 Aligned_cols=20 Identities=30% Similarity=0.386 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 031797 20 ILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 20 i~i~G~~~~GKtsli~~~~~ 39 (153)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998866
No 430
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.55 E-value=0.0013 Score=47.08 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhc
Q 031797 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
.-.+++.|++|+|||++++.+.+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999998865
No 431
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.52 E-value=0.0011 Score=41.89 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=21.7
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
.....+++.|++|+|||++++.+...
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHh
Confidence 44567999999999999999887553
No 432
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.51 E-value=0.0024 Score=47.72 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=21.9
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
..+.-+++.||||+|||++++.+.+
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4456799999999999999999865
No 433
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.51 E-value=0.0031 Score=45.05 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhc
Q 031797 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
...+++.|++|+|||+|+..+.+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999988865
No 434
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.51 E-value=0.0017 Score=45.90 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 031797 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~ 39 (153)
..|+++|++|+||||+.+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998865
No 435
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.50 E-value=0.0025 Score=47.77 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=22.8
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
...+..+++.||||+|||++++.+.+
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 35568999999999999999999865
No 436
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.47 E-value=0.0013 Score=47.31 Aligned_cols=27 Identities=7% Similarity=0.123 Sum_probs=23.3
Q ss_pred ccccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 13 FAKKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
.....-.+++.|++|+|||++++.+..
T Consensus 41 ~~~~~~~lli~GpPGTGKT~~v~~v~~ 67 (318)
T 3te6_A 41 MSSQNKLFYITNADDSTKFQLVNDVMD 67 (318)
T ss_dssp HTTCCCEEEEECCCSHHHHHHHHHHHH
T ss_pred cCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 345678999999999999999999865
No 437
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.47 E-value=0.0016 Score=47.26 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=21.6
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
.....+++.|++|+||||+++.+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999875
No 438
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.47 E-value=0.0018 Score=45.74 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhc
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
....+++.|++|+|||++++.+..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998864
No 439
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.47 E-value=0.0015 Score=45.31 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhc
Q 031797 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
.-.|+++|++|+||||+.+.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988853
No 440
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.46 E-value=0.002 Score=47.40 Aligned_cols=25 Identities=32% Similarity=0.223 Sum_probs=21.8
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
+..-.++++|++|+|||||++.+.+
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4556899999999999999998875
No 441
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.46 E-value=0.002 Score=46.86 Aligned_cols=22 Identities=36% Similarity=0.341 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031797 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~ 40 (153)
.+++.|++|+|||++++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988653
No 442
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.46 E-value=0.0018 Score=49.84 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=21.7
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..-.+.++|++|+|||||++.+.+-
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4467899999999999999998764
No 443
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.45 E-value=0.0018 Score=48.61 Aligned_cols=27 Identities=15% Similarity=0.146 Sum_probs=23.2
Q ss_pred cccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 14 AKKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 14 ~~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
-.+.-++.++|++|+|||||++.+.+.
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 345678999999999999999998775
No 444
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.44 E-value=0.00091 Score=47.44 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=18.0
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
.+..-|.|.|++|+||||+.+.|..
T Consensus 3 ~~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 3 KKHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999988743
No 445
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.43 E-value=0.0018 Score=45.47 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=20.6
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhc
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
..--++++|++|+|||||+..+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 445789999999999999998864
No 446
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.42 E-value=0.0021 Score=42.74 Aligned_cols=25 Identities=32% Similarity=0.291 Sum_probs=21.3
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
...+.|.++|.+||||||+.+.|..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3468899999999999999988854
No 447
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.41 E-value=0.0023 Score=49.23 Aligned_cols=28 Identities=29% Similarity=0.301 Sum_probs=23.0
Q ss_pred ccccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 13 FAKKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
.....--+.++|++|+|||||++.+.+-
T Consensus 21 ~~~~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 21 TPKNNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp CCCTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3345567899999999999999998774
No 448
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.40 E-value=0.0033 Score=45.21 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031797 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~ 40 (153)
.+++.|++|+|||++++.+.+.
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999988653
No 449
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.40 E-value=0.0018 Score=49.11 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 031797 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~ 39 (153)
-.+.++|++|+|||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 5688999999999999998865
No 450
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.39 E-value=0.0018 Score=44.28 Aligned_cols=25 Identities=36% Similarity=0.307 Sum_probs=18.4
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
.+..-|+|.|++|+||||+++.+..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998753
No 451
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.38 E-value=0.0027 Score=47.10 Aligned_cols=27 Identities=15% Similarity=0.180 Sum_probs=23.0
Q ss_pred ccccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 13 FAKKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
-...+..+++.||||+|||.+++.+.+
T Consensus 178 gi~~prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 178 GIAQPKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp TCCCCCCEEEESCSSSSHHHHHHHHHH
T ss_pred CCCCCCceEEeCCCCCCHHHHHHHHHH
Confidence 334567899999999999999999865
No 452
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.38 E-value=0.0026 Score=42.68 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=22.1
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
.....++|+|++|+|||++...+...
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHh
Confidence 44567999999999999999998654
No 453
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.37 E-value=0.002 Score=49.95 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=22.1
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
+..-.+.++|++|+|||||++.+.+-
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999998764
No 454
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.37 E-value=0.0023 Score=49.64 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=22.0
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
+..-.+.++|++|+|||||++.+.+-
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 34457999999999999999998764
No 455
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.35 E-value=0.0021 Score=46.99 Aligned_cols=20 Identities=20% Similarity=0.423 Sum_probs=17.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 031797 19 RILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~ 38 (153)
-.+|+|++|+||||+++.+.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 35699999999999999875
No 456
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.0021 Score=50.20 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=21.6
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..-.+.++|++|+|||||++.+.+-
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 4457899999999999999998764
No 457
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.34 E-value=0.0029 Score=43.25 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=21.5
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
.....|.++|++|+||||+.+.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999988764
No 458
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.34 E-value=0.0021 Score=46.39 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031797 19 RILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~~ 40 (153)
.+++.||+|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999988653
No 459
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.33 E-value=0.0027 Score=45.53 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhc
Q 031797 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
...+++.|++|+|||++++.+.+
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 46899999999999999999865
No 460
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.32 E-value=0.0029 Score=44.72 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 031797 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~ 39 (153)
..+++.|++|+|||++++.+.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999998865
No 461
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.32 E-value=0.0027 Score=45.56 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
...+++.|++|+|||++++.+.+.
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 468999999999999999998753
No 462
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.31 E-value=0.0024 Score=43.49 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=19.2
Q ss_pred cccEEEEEcCCCCcHHHHHHHHh
Q 031797 16 KEMRILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~ 38 (153)
..--++++|++|+|||||+..+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34568999999999999987774
No 463
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.30 E-value=0.0011 Score=46.10 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhc
Q 031797 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
...+++.|++|+|||++++.+.+
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHH
Confidence 44599999999999999999865
No 464
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.28 E-value=0.0031 Score=44.82 Aligned_cols=125 Identities=16% Similarity=0.168 Sum_probs=65.7
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhc------C-Ccc-----ccCCc-----------eeeEEEE-E----------EEcCE
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKL------G-EIV-----TTIPT-----------IGFNVET-V----------EYKNI 61 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~------~-~~~-----~~~~t-----------~~~~~~~-~----------~~~~~ 61 (153)
+...++++|++|+||||++..+.. + +.. ...+. .+..... . ...+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~ 183 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY 183 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence 456899999999999999988742 1 110 00000 0000000 0 01456
Q ss_pred EEEEEEcCCCCCchh-ch---Hhhhc--CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCceEEEEEeCCCcccc-C
Q 031797 62 SFTVWDVGGQDKIRP-LW---RHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-M 134 (153)
Q Consensus 62 ~~~i~d~~g~~~~~~-~~---~~~~~--~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~~K~Dl~~~-~ 134 (153)
.+.++|++|...... .. ...+. ..+.+++|+|++.. ...+..... .+.. -+. .-++.||.|.... .
T Consensus 184 dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~-~~~~---l~~-~giVltk~D~~~~~g 256 (296)
T 2px0_A 184 DHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVK-RFSS---VPV-NQYIFTKIDETTSLG 256 (296)
T ss_dssp SEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTT-TTSS---SCC-CEEEEECTTTCSCCH
T ss_pred CEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHH-HHhc---CCC-CEEEEeCCCcccchh
Confidence 899999999754422 11 12222 35778899987632 222222211 1111 122 3456699997643 2
Q ss_pred CHHHHHHHhCCCc
Q 031797 135 NAAEITDKLGLHS 147 (153)
Q Consensus 135 ~~~~~~~~~~~~~ 147 (153)
....+....++|.
T Consensus 257 ~~~~~~~~~~~pi 269 (296)
T 2px0_A 257 SVFNILAESKIGV 269 (296)
T ss_dssp HHHHHHHTCSCCC
T ss_pred HHHHHHHHHCcCE
Confidence 3455666666654
No 465
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.27 E-value=0.0026 Score=46.14 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhc
Q 031797 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
...+++.|++|+|||+++..+..
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998864
No 466
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.24 E-value=0.0033 Score=45.24 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 031797 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~ 39 (153)
..|+++|++|+||||+...+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988854
No 467
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.23 E-value=0.0028 Score=49.51 Aligned_cols=25 Identities=32% Similarity=0.321 Sum_probs=21.6
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..-.+.++|++|+|||||++.+.+-
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 4467899999999999999998764
No 468
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.22 E-value=0.003 Score=46.13 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.1
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhc
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
....+++.|++|+|||++++.+..
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998864
No 469
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.21 E-value=0.0038 Score=46.45 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=21.4
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
....-|+++|++|+||||+.+.+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999999864
No 470
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.21 E-value=0.0036 Score=45.50 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhc
Q 031797 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
...+++.|++|+|||++++.+.+
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998865
No 471
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.21 E-value=0.0024 Score=46.33 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=21.7
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
.....+++.|++|+|||++++.+.+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999998865
No 472
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.20 E-value=0.0032 Score=41.29 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=22.2
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
....-+++.|++|+||||+...+...
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 44578999999999999999988754
No 473
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.20 E-value=0.0022 Score=49.73 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=21.9
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
+..-.+.++|++|+|||||++.+.+-
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcC
Confidence 34568899999999999999988763
No 474
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.19 E-value=0.0029 Score=45.29 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 031797 18 MRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
-.++|.|++|+|||||++.+...
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 57999999999999999998754
No 475
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.18 E-value=0.0024 Score=49.62 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=21.9
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
+..-.+.++|++|+|||||++.+.+-
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567899999999999999988763
No 476
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.18 E-value=0.0028 Score=48.78 Aligned_cols=24 Identities=29% Similarity=0.178 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
.-.+.++|++|+|||||++.+.+-
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999774
No 477
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.17 E-value=0.0049 Score=46.06 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=23.4
Q ss_pred ccccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 13 FAKKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
-...+.-+++.||||+|||++++.+.+.
T Consensus 212 Gi~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 212 GIKPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp TCCCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCCCCceECCCCchHHHHHHHHHHH
Confidence 3355678999999999999999998753
No 478
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.15 E-value=0.0024 Score=49.66 Aligned_cols=26 Identities=27% Similarity=0.236 Sum_probs=22.0
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
+..-.+.++|++|+|||||++.+.+-
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34457899999999999999998764
No 479
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.15 E-value=0.0036 Score=41.52 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031797 19 RILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~~ 39 (153)
.|.|.|++|+||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988844
No 480
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.14 E-value=0.0054 Score=46.52 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhc
Q 031797 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
+..++++|++|+|||++++.+.+
T Consensus 49 p~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999999876
No 481
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.14 E-value=0.003 Score=45.25 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 031797 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~ 39 (153)
-.++|.|++|+|||+|++.+..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~ 52 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGIN 52 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 482
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.14 E-value=0.0065 Score=44.32 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=20.0
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhc
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
...+++++|++|+||||+...+.+
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHH
Confidence 346799999999999999987643
No 483
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.13 E-value=0.0035 Score=48.26 Aligned_cols=25 Identities=36% Similarity=0.270 Sum_probs=21.7
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
..-.+.++|++|+|||||++.+.+-
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999874
No 484
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.12 E-value=0.0035 Score=44.96 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=21.1
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
....+++.|++|+|||++++.+...
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3457999999999999999998543
No 485
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.12 E-value=0.004 Score=45.29 Aligned_cols=25 Identities=28% Similarity=0.228 Sum_probs=21.8
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
.....+++.|++|+|||++++.+.+
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999865
No 486
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.12 E-value=0.0035 Score=41.96 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=17.4
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 031797 19 RILMVGLDAAGKTTILYKLK 38 (153)
Q Consensus 19 ~i~i~G~~~~GKtsli~~~~ 38 (153)
-.+|+|+.|+||||++..+.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 45789999999999999873
No 487
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.12 E-value=0.0031 Score=45.85 Aligned_cols=26 Identities=19% Similarity=0.166 Sum_probs=22.0
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
+..--+.++|++|+|||||+..+...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44567899999999999999998754
No 488
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.11 E-value=0.0028 Score=49.40 Aligned_cols=26 Identities=35% Similarity=0.383 Sum_probs=22.2
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
+..-.+.++|++|+|||||++.+.+-
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 34568999999999999999988764
No 489
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.11 E-value=0.0033 Score=45.61 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 031797 18 MRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 18 ~~i~i~G~~~~GKtsli~~~~~ 39 (153)
.-|+|+|++|||||||...+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999988854
No 490
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.11 E-value=0.0034 Score=43.50 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=22.2
Q ss_pred ccccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 15 ~~~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
.....+++.|++|+|||++++.+...
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 34578999999999999999998654
No 491
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.11 E-value=0.0031 Score=47.32 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhc
Q 031797 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
.-.+++.|++|+|||+|++.+.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998865
No 492
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.11 E-value=0.0036 Score=45.54 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.1
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhc
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
....+++.||+|+|||++++.+..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998864
No 493
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.11 E-value=0.0033 Score=49.11 Aligned_cols=24 Identities=33% Similarity=0.236 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
.-.+.++|++|+|||||++.+.+-
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999874
No 494
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.09 E-value=0.0058 Score=48.77 Aligned_cols=33 Identities=27% Similarity=0.361 Sum_probs=25.5
Q ss_pred HHHhhcccccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 7 KLFSKLFAKKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 7 ~~~~~~~~~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
.+.+.......-+++++|++|+|||++++.+.+
T Consensus 197 ~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 197 RAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp HHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHH
Confidence 334444445678899999999999999988864
No 495
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.08 E-value=0.004 Score=41.05 Aligned_cols=21 Identities=29% Similarity=0.227 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 031797 20 ILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 20 i~i~G~~~~GKtsli~~~~~~ 40 (153)
++|+|.++||||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999998754
No 496
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.08 E-value=0.0046 Score=46.64 Aligned_cols=27 Identities=22% Similarity=0.129 Sum_probs=23.2
Q ss_pred ccccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 13 FAKKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
--..+..|++.||||+|||++++.+.+
T Consensus 239 Gi~pprGILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 239 GIDPPKGILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp TCCCCSEEEECSCTTSSHHHHHHHHHH
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHh
Confidence 335678999999999999999999865
No 497
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.05 E-value=0.0051 Score=49.17 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=22.8
Q ss_pred cccccccEEEEEcCCCCcHHHHHHHHhc
Q 031797 12 LFAKKEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 12 ~~~~~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
......-+++++|++|+|||++++.+..
T Consensus 196 l~~~~~~~vLL~G~pGtGKT~la~~la~ 223 (758)
T 3pxi_A 196 LSRRTKNNPVLIGEPGVGKTAIAEGLAQ 223 (758)
T ss_dssp HHCSSSCEEEEESCTTTTTHHHHHHHHH
T ss_pred HhCCCCCCeEEECCCCCCHHHHHHHHHH
Confidence 3345567899999999999999988854
No 498
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.05 E-value=0.005 Score=44.00 Aligned_cols=24 Identities=38% Similarity=0.476 Sum_probs=20.2
Q ss_pred cccEEEEEcCCCCcHHHHHHHHhc
Q 031797 16 KEMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 16 ~~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
...-++++|++|+||||++..+.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 345789999999999999988853
No 499
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.05 E-value=0.0045 Score=42.35 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=19.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhc
Q 031797 17 EMRILMVGLDAAGKTTILYKLKL 39 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~ 39 (153)
...|++.|..|+||||+++.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999998854
No 500
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.05 E-value=0.0036 Score=45.57 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcC
Q 031797 17 EMRILMVGLDAAGKTTILYKLKLG 40 (153)
Q Consensus 17 ~~~i~i~G~~~~GKtsli~~~~~~ 40 (153)
...+++.|++|+|||++++.+.+.
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999988653
Done!