BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031801
(153 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OQU|A Chain A, Crystal Structure Of Native Abscisic Acid Receptor Pyl9
With Aba
pdb|3OQU|B Chain B, Crystal Structure Of Native Abscisic Acid Receptor Pyl9
With Aba
Length = 205
Score = 251 bits (641), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 119/139 (85%), Positives = 130/139 (93%)
Query: 10 VWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIF 69
VWSLVRRFDQPQKYKPFVSRC V GD +IGS+REVNVKSGLPATTSTERLELLDDEEHI
Sbjct: 67 VWSLVRRFDQPQKYKPFVSRCTVIGDPEIGSLREVNVKSGLPATTSTERLELLDDEEHIL 126
Query: 70 GMRIVGGDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKC 129
G++I+GGDHRLKNYSSI+TVHPE+I+GR GT+VIESFVVDVP GNTKDETCYFVEALI+C
Sbjct: 127 GIKIIGGDHRLKNYSSILTVHPEIIEGRAGTMVIESFVVDVPQGNTKDETCYFVEALIRC 186
Query: 130 NLKSLADVSEHLAVQDRTE 148
NLKSLADVSE LA QD T+
Sbjct: 187 NLKSLADVSERLASQDITQ 205
>pdb|3UQH|A Chain A, Crystal Strcuture Of Aba Receptor Pyl10 (Apo)
pdb|3UQH|B Chain B, Crystal Strcuture Of Aba Receptor Pyl10 (Apo)
pdb|3R6P|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl10
Length = 191
Score = 222 bits (565), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 102/142 (71%), Positives = 123/142 (86%), Gaps = 1/142 (0%)
Query: 10 VWSLVRRFDQPQKYKPFVSRCIVQGD-LQIGSVREVNVKSGLPATTSTERLELLDDEEHI 68
VWS+VRRFD+PQKYKPF+SRC+VQG L++GSVREV++KSGLPAT STE LE+LDD EHI
Sbjct: 42 VWSIVRRFDEPQKYKPFISRCVVQGKKLEVGSVREVDLKSGLPATKSTEVLEILDDNEHI 101
Query: 69 FGMRIVGGDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIK 128
G+RIVGGDHRLKNYSS +++H E IDG+ GTL IESFVVDVP+GNTK+ETC+FVEALI+
Sbjct: 102 LGIRIVGGDHRLKNYSSTISLHSETIDGKTGTLAIESFVVDVPEGNTKEETCFFVEALIQ 161
Query: 129 CNLKSLADVSEHLAVQDRTEPI 150
CNL SLADV+E L + + I
Sbjct: 162 CNLNSLADVTERLQAESMEKKI 183
>pdb|3RT2|A Chain A, Crystal Structure Of Apo-Pyl10
Length = 183
Score = 222 bits (565), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 102/142 (71%), Positives = 123/142 (86%), Gaps = 1/142 (0%)
Query: 10 VWSLVRRFDQPQKYKPFVSRCIVQGD-LQIGSVREVNVKSGLPATTSTERLELLDDEEHI 68
VWS+VRRFD+PQKYKPF+SRC+VQG L++GSVREV++KSGLPAT STE LE+LDD EHI
Sbjct: 42 VWSIVRRFDEPQKYKPFISRCVVQGKKLEVGSVREVDLKSGLPATKSTEVLEILDDNEHI 101
Query: 69 FGMRIVGGDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIK 128
G+RIVGGDHRLKNYSS +++H E IDG+ GTL IESFVVDVP+GNTK+ETC+FVEALI+
Sbjct: 102 LGIRIVGGDHRLKNYSSTISLHSETIDGKTGTLAIESFVVDVPEGNTKEETCFFVEALIQ 161
Query: 129 CNLKSLADVSEHLAVQDRTEPI 150
CNL SLADV+E L + + I
Sbjct: 162 CNLNSLADVTERLQAESMEKKI 183
>pdb|3RT0|C Chain C, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
pdb|3RT0|D Chain D, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
Length = 183
Score = 218 bits (555), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 101/142 (71%), Positives = 122/142 (85%), Gaps = 1/142 (0%)
Query: 10 VWSLVRRFDQPQKYKPFVSRCIVQGD-LQIGSVREVNVKSGLPATTSTERLELLDDEEHI 68
VWS+VRRFD+PQKYKPF+SRC+VQG L++GSVREV++KSGLPAT STE LE+LDD EHI
Sbjct: 42 VWSIVRRFDEPQKYKPFISRCVVQGKKLEVGSVREVDLKSGLPATKSTEVLEILDDNEHI 101
Query: 69 FGMRIVGGDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIK 128
G+RIVGGDHRLKNYSS +++H E IDG+ GTL IESFVVDVP+GNTK+ETC+FVEALI+
Sbjct: 102 LGIRIVGGDHRLKNYSSTISLHSETIDGKTGTLAIESFVVDVPEGNTKEETCFFVEALIQ 161
Query: 129 CNLKSLADVSEHLAVQDRTEPI 150
NL SLADV+E L + + I
Sbjct: 162 SNLNSLADVTERLQAESMEKKI 183
>pdb|3QRZ|A Chain A, Crystal Structure Of Native Abscisic Acid Receptor Pyl5 At
2.6 Angstrom
pdb|3QRZ|B Chain B, Crystal Structure Of Native Abscisic Acid Receptor Pyl5 At
2.6 Angstrom
pdb|3QRZ|C Chain C, Crystal Structure Of Native Abscisic Acid Receptor Pyl5 At
2.6 Angstrom
Length = 223
Score = 152 bits (383), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 74/128 (57%), Positives = 99/128 (77%), Gaps = 5/128 (3%)
Query: 10 VWSLVRRFDQPQKYKPFVSRC-IVQGD-LQIGSVREVNVKSGLPATTSTERLELLDDEEH 67
VW+LVRRFD P+ YK F+ +C IVQGD L +G +REV V SGLPA +STERLE+LD+E H
Sbjct: 93 VWALVRRFDNPKVYKNFIRQCRIVQGDGLHVGDLREVMVVSGLPAVSSTERLEILDEERH 152
Query: 68 IFGMRIVGGDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALI 127
+ +VGGDHRLKNY S+ T+H + GT+V+ES++VDVP GNT++ET FV+ ++
Sbjct: 153 VISFSVVGGDHRLKNYRSVTTLHASDDE---GTVVVESYIVDVPPGNTEEETLSFVDTIV 209
Query: 128 KCNLKSLA 135
+CNL+SLA
Sbjct: 210 RCNLQSLA 217
>pdb|3ZVU|A Chain A, Structure Of The Pyr1 His60pro Mutant In Complex With The
Hab1 Phosphatase And Abscisic Acid
Length = 193
Score = 150 bits (378), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 70/135 (51%), Positives = 100/135 (74%), Gaps = 2/135 (1%)
Query: 10 VWSLVRRFDQPQKYKPFVSRCIVQGD--LQIGSVREVNVKSGLPATTSTERLELLDDEEH 67
VWS+VRRFD+PQ YKPF+ C V+ + +++G R+V V SGLPA TSTERL++LDDE
Sbjct: 47 VWSIVRRFDKPQTYKPFIKSCSVEQNFEMRVGCTRDVIVISGLPANTSTERLDILDDERR 106
Query: 68 IFGMRIVGGDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALI 127
+ G I+GG+HRL NY S+ TVH + R T+V+ES+VVD+P+GN++D+T F + ++
Sbjct: 107 VTGFSIIGGEHRLTNYKSVTTVHRFEKENRIWTVVLESYVVDMPEGNSEDDTRMFADTVV 166
Query: 128 KCNLKSLADVSEHLA 142
K NL+ LA V+E +A
Sbjct: 167 KLNLQKLATVAEAMA 181
>pdb|3K90|A Chain A, The Abscisic Acid Receptor Pyr1 In Complex With Abscisic
Acid
pdb|3K90|B Chain B, The Abscisic Acid Receptor Pyr1 In Complex With Abscisic
Acid
pdb|3K90|C Chain C, The Abscisic Acid Receptor Pyr1 In Complex With Abscisic
Acid
pdb|3K90|D Chain D, The Abscisic Acid Receptor Pyr1 In Complex With Abscisic
Acid
pdb|3QN1|A Chain A, Crystal Structure Of The Pyr1 Abscisic Acid Receptor In
Complex With The Hab1 Type 2c Phosphatase Catalytic
Domain
Length = 193
Score = 146 bits (368), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 69/135 (51%), Positives = 99/135 (73%), Gaps = 2/135 (1%)
Query: 10 VWSLVRRFDQPQKYKPFVSRCIVQGD--LQIGSVREVNVKSGLPATTSTERLELLDDEEH 67
VWS+VRRFD+PQ YK F+ C V+ + +++G R+V V SGLPA TSTERL++LDDE
Sbjct: 47 VWSIVRRFDKPQTYKHFIKSCSVEQNFEMRVGCTRDVIVISGLPANTSTERLDILDDERR 106
Query: 68 IFGMRIVGGDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALI 127
+ G I+GG+HRL NY S+ TVH + R T+V+ES+VVD+P+GN++D+T F + ++
Sbjct: 107 VTGFSIIGGEHRLTNYKSVTTVHRFEKENRIWTVVLESYVVDMPEGNSEDDTRMFADTVV 166
Query: 128 KCNLKSLADVSEHLA 142
K NL+ LA V+E +A
Sbjct: 167 KLNLQKLATVAEAMA 181
>pdb|3K3K|A Chain A, Crystal Structure Of Dimeric Abscisic Acid (Aba) Receptor
Pyrabactin Resistance 1 (Pyr1) With Aba-Bound Closed-Lid
And Aba-Free Open-Lid Subunits
pdb|3K3K|B Chain B, Crystal Structure Of Dimeric Abscisic Acid (Aba) Receptor
Pyrabactin Resistance 1 (Pyr1) With Aba-Bound Closed-Lid
And Aba-Free Open-Lid Subunits
Length = 211
Score = 145 bits (366), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 69/135 (51%), Positives = 99/135 (73%), Gaps = 2/135 (1%)
Query: 10 VWSLVRRFDQPQKYKPFVSRCIVQGD--LQIGSVREVNVKSGLPATTSTERLELLDDEEH 67
VWS+VRRFD+PQ YK F+ C V+ + +++G R+V V SGLPA TSTERL++LDDE
Sbjct: 65 VWSIVRRFDKPQTYKHFIKSCSVEQNFEMRVGCTRDVIVISGLPANTSTERLDILDDERR 124
Query: 68 IFGMRIVGGDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALI 127
+ G I+GG+HRL NY S+ TVH + R T+V+ES+VVD+P+GN++D+T F + ++
Sbjct: 125 VTGFSIIGGEHRLTNYKSVTTVHRFEKENRIWTVVLESYVVDMPEGNSEDDTRMFADTVV 184
Query: 128 KCNLKSLADVSEHLA 142
K NL+ LA V+E +A
Sbjct: 185 KLNLQKLATVAEAMA 199
>pdb|3NJ1|A Chain A, X-Ray Crystal Structure Of The Pyl2(V114i)-Pyrabactin A
Complex
Length = 193
Score = 144 bits (364), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 70/140 (50%), Positives = 101/140 (72%), Gaps = 5/140 (3%)
Query: 10 VWSLVRRFDQPQKYKPFVSRC-IVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHI 68
VW L+RRFD P++YK FV RC ++ GD +GSVREV V SGLPA+TSTERLE +DD+ +
Sbjct: 53 VWPLIRRFDNPERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRV 112
Query: 69 FGMRIVGGDHRLKNYSSIVTVHPEVID---GRPGTLVIESFVVDVPDGNTKDETCYFVEA 125
RIVGG+HRLKNY S+ +V+ E ++ G+ T+V+ES+ VD+P+GNT+++T FV+
Sbjct: 113 LSFRIVGGEHRLKNYKSVTSVN-EFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDT 171
Query: 126 LIKCNLKSLADVSEHLAVQD 145
++K NL+ L + + D
Sbjct: 172 VVKLNLQKLGVAATSAPMHD 191
>pdb|3KDH|A Chain A, Structure Of Ligand-Free Pyl2
pdb|3KDH|B Chain B, Structure Of Ligand-Free Pyl2
pdb|3KDH|C Chain C, Structure Of Ligand-Free Pyl2
pdb|3KDI|A Chain A, Structure Of (+)-Aba Bound Pyl2
pdb|3NR4|A Chain A, Pyrabactin-Bound Pyl2
pdb|3NR4|B Chain B, Pyrabactin-Bound Pyl2
pdb|3NR4|C Chain C, Pyrabactin-Bound Pyl2
pdb|3NS2|A Chain A, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3NS2|B Chain B, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3NS2|C Chain C, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3KL1|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl2 At 1.55 A
pdb|3KL1|B Chain B, Crystal Structure Of Abscisic Acid Receptor Pyl2 At 1.55 A
Length = 190
Score = 144 bits (363), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 101/140 (72%), Gaps = 5/140 (3%)
Query: 10 VWSLVRRFDQPQKYKPFVSRC-IVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHI 68
VW L+RRFD P++YK FV RC ++ GD +GSVREV V SGLPA+TSTERLE +DD+ +
Sbjct: 50 VWPLIRRFDNPERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRV 109
Query: 69 FGMRIVGGDHRLKNYSSIVTVHPEVID---GRPGTLVIESFVVDVPDGNTKDETCYFVEA 125
R+VGG+HRLKNY S+ +V+ E ++ G+ T+V+ES+ VD+P+GNT+++T FV+
Sbjct: 110 LSFRVVGGEHRLKNYKSVTSVN-EFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDT 168
Query: 126 LIKCNLKSLADVSEHLAVQD 145
++K NL+ L + + D
Sbjct: 169 VVKLNLQKLGVAATSAPMHD 188
>pdb|3KAZ|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KAZ|B Chain B, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KAZ|C Chain C, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KB0|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl2
pdb|3KB3|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex
With Hab1
Length = 176
Score = 144 bits (363), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 101/140 (72%), Gaps = 5/140 (3%)
Query: 10 VWSLVRRFDQPQKYKPFVSRC-IVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHI 68
VW L+RRFD P++YK FV RC ++ GD +GSVREV V SGLPA+TSTERLE +DD+ +
Sbjct: 38 VWPLIRRFDNPERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRV 97
Query: 69 FGMRIVGGDHRLKNYSSIVTVHPEVID---GRPGTLVIESFVVDVPDGNTKDETCYFVEA 125
R+VGG+HRLKNY S+ +V+ E ++ G+ T+V+ES+ VD+P+GNT+++T FV+
Sbjct: 98 LSFRVVGGEHRLKNYKSVTSVN-EFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDT 156
Query: 126 LIKCNLKSLADVSEHLAVQD 145
++K NL+ L + + D
Sbjct: 157 VVKLNLQKLGVAATSAPMHD 176
>pdb|3UJL|A Chain A, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex
With Type 2c Protein Phosphatase Abi2
Length = 177
Score = 144 bits (363), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 101/140 (72%), Gaps = 5/140 (3%)
Query: 10 VWSLVRRFDQPQKYKPFVSRC-IVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHI 68
VW L+RRFD P++YK FV RC ++ GD +GSVREV V SGLPA+TSTERLE +DD+ +
Sbjct: 39 VWPLIRRFDNPERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRV 98
Query: 69 FGMRIVGGDHRLKNYSSIVTVHPEVID---GRPGTLVIESFVVDVPDGNTKDETCYFVEA 125
R+VGG+HRLKNY S+ +V+ E ++ G+ T+V+ES+ VD+P+GNT+++T FV+
Sbjct: 99 LSFRVVGGEHRLKNYKSVTSVN-EFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDT 157
Query: 126 LIKCNLKSLADVSEHLAVQD 145
++K NL+ L + + D
Sbjct: 158 VVKLNLQKLGVAATSAPMHD 177
>pdb|3NJ0|A Chain A, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
pdb|3NJ0|B Chain B, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
pdb|3NJ0|C Chain C, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
Length = 193
Score = 144 bits (362), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 101/140 (72%), Gaps = 5/140 (3%)
Query: 10 VWSLVRRFDQPQKYKPFVSRC-IVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHI 68
VW L+RRFD P++YK FV RC ++ GD +GSVREV V SGLPA+TSTERLE +DD+ +
Sbjct: 53 VWPLIRRFDNPERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRV 112
Query: 69 FGMRIVGGDHRLKNYSSIVTVHPEVID---GRPGTLVIESFVVDVPDGNTKDETCYFVEA 125
R+VGG+HRLKNY S+ +V+ E ++ G+ T+V+ES+ VD+P+GNT+++T FV+
Sbjct: 113 LSFRVVGGEHRLKNYKSVTSVN-EFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDT 171
Query: 126 LIKCNLKSLADVSEHLAVQD 145
++K NL+ L + + D
Sbjct: 172 VVKLNLQKLGVAATSAPMHD 191
>pdb|3NMH|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
pdb|3NMH|B Chain B, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
pdb|3NMH|C Chain C, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
Length = 178
Score = 144 bits (362), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 101/140 (72%), Gaps = 5/140 (3%)
Query: 10 VWSLVRRFDQPQKYKPFVSRC-IVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHI 68
VW L+RRFD P++YK FV RC ++ GD +GSVREV V SGLPA+TSTERLE +DD+ +
Sbjct: 39 VWPLIRRFDNPERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRV 98
Query: 69 FGMRIVGGDHRLKNYSSIVTVHPEVID---GRPGTLVIESFVVDVPDGNTKDETCYFVEA 125
R+VGG+HRLKNY S+ +V+ E ++ G+ T+V+ES+ VD+P+GNT+++T FV+
Sbjct: 99 LSFRVVGGEHRLKNYKSVTSVN-EFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDT 157
Query: 126 LIKCNLKSLADVSEHLAVQD 145
++K NL+ L + + D
Sbjct: 158 VVKLNLQKLGVAATSAPMHD 177
>pdb|3NJO|A Chain A, X-Ray Crystal Structure Of The Pyr1-Pyrabactin A Complex
pdb|3NJO|B Chain B, X-Ray Crystal Structure Of The Pyr1-Pyrabactin A Complex
pdb|3NJO|C Chain C, X-Ray Crystal Structure Of The Pyr1-Pyrabactin A Complex
Length = 194
Score = 142 bits (359), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 68/135 (50%), Positives = 98/135 (72%), Gaps = 2/135 (1%)
Query: 10 VWSLVRRFDQPQKYKPFVSRCIVQGD--LQIGSVREVNVKSGLPATTSTERLELLDDEEH 67
VWS+VRRFD+PQ YK F+ C V+ + +++G R+V V SGL A TSTERL++LDDE
Sbjct: 48 VWSIVRRFDKPQTYKHFIKSCSVEQNFEMRVGCTRDVIVISGLSANTSTERLDILDDERR 107
Query: 68 IFGMRIVGGDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALI 127
+ G I+GG+HRL NY S+ TVH + R T+V+ES+VVD+P+GN++D+T F + ++
Sbjct: 108 VTGFSIIGGEHRLTNYKSVTTVHRFEKENRIWTVVLESYVVDMPEGNSEDDTRMFADTVV 167
Query: 128 KCNLKSLADVSEHLA 142
K NL+ LA V+E +A
Sbjct: 168 KLNLQKLATVAEAMA 182
>pdb|3NMP|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMP|B Chain B, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMP|C Chain C, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMT|A Chain A, Crystal Structure Of Pyrabactin Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Hab1
pdb|3NMV|A Chain A, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Abi2
Length = 178
Score = 141 bits (356), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 68/140 (48%), Positives = 100/140 (71%), Gaps = 5/140 (3%)
Query: 10 VWSLVRRFDQPQKYKPFVSRC-IVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHI 68
VW L+RRFD P++YK FV RC ++ GD +GSVREV V SGLP +TSTERLE +DD+ +
Sbjct: 39 VWPLIRRFDNPERYKHFVKRCRLISGDGDVGSVREVTVISGLPFSTSTERLEFVDDDHRV 98
Query: 69 FGMRIVGGDHRLKNYSSIVTVHPEVID---GRPGTLVIESFVVDVPDGNTKDETCYFVEA 125
R+VGG+HRLKNY S+ +V+ E ++ G+ T+V+ES+ VD+P+GNT+++T FV+
Sbjct: 99 LSFRVVGGEHRLKNYKSVTSVN-EFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDT 157
Query: 126 LIKCNLKSLADVSEHLAVQD 145
++K NL+ L + + D
Sbjct: 158 VVKLNLQKLGVAATSAPMHD 177
>pdb|4DSC|A Chain A, Complex Structure Of Abscisic Acid Receptor Pyl3 With
(+)-Aba In Spacegroup Of H32 At 1.95a
pdb|4DSC|B Chain B, Complex Structure Of Abscisic Acid Receptor Pyl3 With
(+)-Aba In Spacegroup Of H32 At 1.95a
Length = 188
Score = 125 bits (314), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 97/142 (68%), Gaps = 11/142 (7%)
Query: 8 NQVWSLVRRFDQPQKYKPFVSRCIVQ------GDLQIGSVREVNVKSGLPATTSTERLEL 61
+ +W VR F P KYK F+ C ++ ++++G++REV+V SGLPA+TS E LE+
Sbjct: 42 HAIWRFVRDFANPNKYKHFIKSCTIRVNGNGIKEIKVGTIREVSVVSGLPASTSVEILEV 101
Query: 62 LDDEEHIFGMRIVGGDHRLKNYSSIVTVHPEVI-----DGRPGTLVIESFVVDVPDGNTK 116
LD+E+ I R++GG+HRL NY S+ +V+ V+ R ++V+ES++VD+P GNT+
Sbjct: 102 LDEEKRILSFRVLGGEHRLNNYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGNTE 161
Query: 117 DETCYFVEALIKCNLKSLADVS 138
++T FV+ ++K NL++LA +S
Sbjct: 162 EDTRMFVDTVVKSNLQNLAVIS 183
>pdb|4DSB|A Chain A, Complex Structure Of Abscisic Acid Receptor Pyl3 With
(+)-Aba In Spacegroup Of I 212121 At 2.70a
pdb|4DSB|B Chain B, Complex Structure Of Abscisic Acid Receptor Pyl3 With
(+)-Aba In Spacegroup Of I 212121 At 2.70a
Length = 186
Score = 125 bits (314), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 97/142 (68%), Gaps = 11/142 (7%)
Query: 8 NQVWSLVRRFDQPQKYKPFVSRCIVQ------GDLQIGSVREVNVKSGLPATTSTERLEL 61
+ +W VR F P KYK F+ C ++ ++++G++REV+V SGLPA+TS E LE+
Sbjct: 40 HAIWRFVRDFANPNKYKHFIKSCTIRVNGNGIKEIKVGTIREVSVVSGLPASTSVEILEV 99
Query: 62 LDDEEHIFGMRIVGGDHRLKNYSSIVTVHPEVI-----DGRPGTLVIESFVVDVPDGNTK 116
LD+E+ I R++GG+HRL NY S+ +V+ V+ R ++V+ES++VD+P GNT+
Sbjct: 100 LDEEKRILSFRVLGGEHRLNNYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGNTE 159
Query: 117 DETCYFVEALIKCNLKSLADVS 138
++T FV+ ++K NL++LA +S
Sbjct: 160 EDTRMFVDTVVKSNLQNLAVIS 181
>pdb|3OJI|A Chain A, X-Ray Crystal Structure Of The Py13 -Pyrabactin Complex
pdb|3OJI|B Chain B, X-Ray Crystal Structure Of The Py13 -Pyrabactin Complex
Length = 189
Score = 125 bits (313), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 97/142 (68%), Gaps = 11/142 (7%)
Query: 8 NQVWSLVRRFDQPQKYKPFVSRCIVQ------GDLQIGSVREVNVKSGLPATTSTERLEL 61
+ +W VR F P KYK F+ C ++ ++++G++REV+V SGLPA+TS E LE+
Sbjct: 43 HAIWRFVRDFANPNKYKHFIKSCTIRVNGNGIKEIKVGTIREVSVVSGLPASTSVEILEV 102
Query: 62 LDDEEHIFGMRIVGGDHRLKNYSSIVTVHPEVI-----DGRPGTLVIESFVVDVPDGNTK 116
LD+E+ I R++GG+HRL NY S+ +V+ V+ R ++V+ES++VD+P GNT+
Sbjct: 103 LDEEKRILSFRVLGGEHRLNNYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGNTE 162
Query: 117 DETCYFVEALIKCNLKSLADVS 138
++T FV+ ++K NL++LA +S
Sbjct: 163 EDTRMFVDTVVKSNLQNLAVIS 184
>pdb|3KLX|A Chain A, Crystal Structure Of Native Abscisic Acid Receptor Pyl3
pdb|3KLX|B Chain B, Crystal Structure Of Native Abscisic Acid Receptor Pyl3
pdb|4DS8|A Chain A, Complex Structure Of Abscisic Acid Receptor
Pyl3-(+)-Aba-Hab1 In The Presence Of Mn2+
Length = 209
Score = 124 bits (312), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 97/142 (68%), Gaps = 11/142 (7%)
Query: 8 NQVWSLVRRFDQPQKYKPFVSRCIVQ------GDLQIGSVREVNVKSGLPATTSTERLEL 61
+ +W VR F P KYK F+ C ++ ++++G++REV+V SGLPA+TS E LE+
Sbjct: 63 HAIWRFVRDFANPNKYKHFIKSCTIRVNGNGIKEIKVGTIREVSVVSGLPASTSVEILEV 122
Query: 62 LDDEEHIFGMRIVGGDHRLKNYSSIVTVHPEVI-----DGRPGTLVIESFVVDVPDGNTK 116
LD+E+ I R++GG+HRL NY S+ +V+ V+ R ++V+ES++VD+P GNT+
Sbjct: 123 LDEEKRILSFRVLGGEHRLNNYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGNTE 182
Query: 117 DETCYFVEALIKCNLKSLADVS 138
++T FV+ ++K NL++LA +S
Sbjct: 183 EDTRMFVDTVVKSNLQNLAVIS 204
>pdb|3KDJ|A Chain A, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1
pdb|3NEF|A Chain A, High-Resolution Pyrabactin-Bound Pyl1 Structure
pdb|3NEF|B Chain B, High-Resolution Pyrabactin-Bound Pyl1 Structure
pdb|3NEG|A Chain A, Pyrabactin-Bound Pyl1 Structure In The Open And Close
Forms
pdb|3NEG|B Chain B, Pyrabactin-Bound Pyl1 Structure In The Open And Close
Forms
Length = 202
Score = 122 bits (307), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 69/137 (50%), Positives = 98/137 (71%), Gaps = 5/137 (3%)
Query: 10 VWSLVRRFDQPQKYKPFVSRCIVQGD--LQIGSVREVNVKSGLPATTSTERLELLDDEEH 67
VWS+VRRFD+PQ YK F+ C V D +++G R+VNV SGLPA TS ERL+LLDD+
Sbjct: 53 VWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVGCTRDVNVISGLPANTSRERLDLLDDDRR 112
Query: 68 IFGMRIVGGDHRLKNYSSIVTVH---PEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVE 124
+ G I GG+HRL+NY S+ TVH E + R T+V+ES+VVDVP+GN++++T F +
Sbjct: 113 VTGFSITGGEHRLRNYKSVTTVHRFEKEEEEERIWTVVLESYVVDVPEGNSEEDTRLFAD 172
Query: 125 ALIKCNLKSLADVSEHL 141
+I+ NL+ LA ++E +
Sbjct: 173 TVIRLNLQKLASITEAM 189
>pdb|3JRS|A Chain A, Crystal Structure Of (+)-Aba-Bound Pyl1
pdb|3JRS|B Chain B, Crystal Structure Of (+)-Aba-Bound Pyl1
pdb|3JRS|C Chain C, Crystal Structure Of (+)-Aba-Bound Pyl1
Length = 208
Score = 122 bits (307), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 69/137 (50%), Positives = 98/137 (71%), Gaps = 5/137 (3%)
Query: 10 VWSLVRRFDQPQKYKPFVSRCIVQGD--LQIGSVREVNVKSGLPATTSTERLELLDDEEH 67
VWS+VRRFD+PQ YK F+ C V D +++G R+VNV SGLPA TS ERL+LLDD+
Sbjct: 69 VWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVGCTRDVNVISGLPANTSRERLDLLDDDRR 128
Query: 68 IFGMRIVGGDHRLKNYSSIVTVH---PEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVE 124
+ G I GG+HRL+NY S+ TVH E + R T+V+ES+VVDVP+GN++++T F +
Sbjct: 129 VTGFSITGGEHRLRNYKSVTTVHRFEKEEEEERIWTVVLESYVVDVPEGNSEEDTRLFAD 188
Query: 125 ALIKCNLKSLADVSEHL 141
+I+ NL+ LA ++E +
Sbjct: 189 TVIRLNLQKLASITEAM 205
>pdb|3KAY|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl1
pdb|3KAY|B Chain B, Crystal Structure Of Abscisic Acid Receptor Pyl1
pdb|3NMN|A Chain A, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
pdb|3NMN|C Chain C, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
Length = 178
Score = 122 bits (306), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 69/137 (50%), Positives = 98/137 (71%), Gaps = 5/137 (3%)
Query: 10 VWSLVRRFDQPQKYKPFVSRCIVQGD--LQIGSVREVNVKSGLPATTSTERLELLDDEEH 67
VWS+VRRFD+PQ YK F+ C V D +++G R+VNV SGLPA TS ERL+LLDD+
Sbjct: 39 VWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVGCTRDVNVISGLPANTSRERLDLLDDDRR 98
Query: 68 IFGMRIVGGDHRLKNYSSIVTVH---PEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVE 124
+ G I GG+HRL+NY S+ TVH E + R T+V+ES+VVDVP+GN++++T F +
Sbjct: 99 VTGFSITGGEHRLRNYKSVTTVHRFEKEEEEERIWTVVLESYVVDVPEGNSEEDTRLFAD 158
Query: 125 ALIKCNLKSLADVSEHL 141
+I+ NL+ LA ++E +
Sbjct: 159 TVIRLNLQKLASITEAM 175
>pdb|3JRQ|B Chain B, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With
Abi1
Length = 186
Score = 122 bits (306), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 69/137 (50%), Positives = 98/137 (71%), Gaps = 5/137 (3%)
Query: 10 VWSLVRRFDQPQKYKPFVSRCIVQGD--LQIGSVREVNVKSGLPATTSTERLELLDDEEH 67
VWS+VRRFD+PQ YK F+ C V D +++G R+VNV SGLPA TS ERL+LLDD+
Sbjct: 48 VWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVGCTRDVNVISGLPANTSRERLDLLDDDRR 107
Query: 68 IFGMRIVGGDHRLKNYSSIVTVH---PEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVE 124
+ G I GG+HRL+NY S+ TVH E + R T+V+ES+VVDVP+GN++++T F +
Sbjct: 108 VTGFSITGGEHRLRNYKSVTTVHRFEKEEEEERIWTVVLESYVVDVPEGNSEEDTRLFAD 167
Query: 125 ALIKCNLKSLADVSEHL 141
+I+ NL+ LA ++E +
Sbjct: 168 TVIRLNLQKLASITEAM 184
>pdb|3F08|A Chain A, Crystal Structure Of The Putative Uncharacterized Protein
Q6hg14 From Bacilllus Thuringiensis. Northeast
Structural Genomics Consortium Target Bur153.
pdb|3F08|B Chain B, Crystal Structure Of The Putative Uncharacterized Protein
Q6hg14 From Bacilllus Thuringiensis. Northeast
Structural Genomics Consortium Target Bur153
Length = 146
Score = 34.7 bits (78), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 13/128 (10%)
Query: 9 QVWSLVRRFDQPQKYKPFV-SRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEH 67
QVW L+ F+ + P++ S + +G G VR + G T ERLE+ +D+E
Sbjct: 16 QVWQLIGGFNSLPDWLPYIPSSKLTEG----GRVRHLANPDG---ETIIERLEVFNDKER 68
Query: 68 IFGMRIVGGDHRLKNYSSIVTVHPEVIDG-RPGTLVIESFVVDVPDGNTKDETCYFVEAL 126
+ I + NY S + +V +G T ++E P + +E V +
Sbjct: 69 YYTYSIXNAPFPVTNYLSTI----QVKEGTESNTSLVEWSGTFTPVAVSDEEAINLVHGI 124
Query: 127 IKCNLKSL 134
LK+L
Sbjct: 125 YSDGLKAL 132
>pdb|3CNW|A Chain A, Three-Dimensional Structure Of The Protein Xoxi (Q81ay6)
From Bacillus Cereus. Northeast Structural Genomics
Consortium Target Bcr196.
pdb|3CNW|B Chain B, Three-Dimensional Structure Of The Protein Xoxi (Q81ay6)
From Bacillus Cereus. Northeast Structural Genomics
Consortium Target Bcr196
Length = 148
Score = 34.3 bits (77), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 9 QVWSLVRRFDQPQKYKPFV-SRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEH 67
QVW L+ F+ + P++ S + +G G VR + G T ERLE+ +D+E
Sbjct: 18 QVWQLIGGFNSLPDWLPYIPSSKLTEG----GRVRHLANPDG---DTIIERLEVFNDKER 70
Query: 68 IFGMRIVGGDHRLKNYSSIVTV 89
+ I + NY S + V
Sbjct: 71 YYTYSIXNAPFPVTNYLSTIQV 92
>pdb|2IHW|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2II3|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II4|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II5|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
Length = 262
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 13/92 (14%)
Query: 36 LQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKNYSSI-------VT 88
L + +V+ V ++S T RL+ L + ++GG L N SI V
Sbjct: 134 LIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVI 193
Query: 89 VHPEVIDGRPGTLVIESFVVDVPDGNTKDETC 120
+ PEV G GT + +P N K E C
Sbjct: 194 LPPEVAIGALGT------IKALPRFNEKGEVC 219
>pdb|4GKL|A Chain A, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
pdb|4GKL|B Chain B, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
Length = 422
Score = 29.6 bits (65), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 15/103 (14%)
Query: 49 GLPATTSTERLELLDDEEHIFGMRIVGGDHRLKNYSSIVTVHPEVIDGRPGTL-----VI 103
P + L L D E + GM I N ++ +HP ++GR GTL +
Sbjct: 15 AYPGEKGKKFLSLEKDLERLKGMGI--------NTVWLMPIHPTGVEGRKGTLGSPYAIR 66
Query: 104 ESFVVDVPDGNTKDETCYFVEALIKCNLKSLAD-VSEHLAVQD 145
+ + +D+ G TK + FV+ + N+ L D V H AV +
Sbjct: 67 DYYEIDLLIG-TKGDFKKFVKRAHELNMYVLMDMVLNHAAVDN 108
>pdb|2WQL|A Chain A, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|B Chain B, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|C Chain C, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|D Chain D, Crystal Structure Of The Major Carrot Allergen Dau C 1
Length = 154
Score = 29.6 bits (65), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 32 VQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKNYSSIVT 88
V+GD G+VR + + G P TT T R + ++ E + ++ GD L SI T
Sbjct: 44 VKGDGGAGTVRIITLPEGSPITTMTVRTDAVNKEALSYDSTVIDGDILLGFIESIET 100
>pdb|2BK0|A Chain A, Crystal Structure Of The Major Celery Allergen Api G 1
pdb|2BK0|B Chain B, Crystal Structure Of The Major Celery Allergen Api G 1
Length = 154
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 22 KYKPFVSRCI-VQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRL 80
K P + + ++GD G+++ + + G P TT T R++ ++ E F ++ GD L
Sbjct: 33 KAAPGAYKSVEIKGDGGPGTLKIITLPDGGPITTMTLRIDGVNKEALTFDYSVIDGDILL 92
Query: 81 KNYSSI 86
SI
Sbjct: 93 GFIESI 98
>pdb|2I9Y|A Chain A, Solution Structure Of Arabidopsis Thaliana Protein
At1g70830, A Member Of The Major Latex Protein Family
Length = 166
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 33 QGDL-QIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKNYSS-IVTVH 90
+GD +GS+ N A + ER+E ++ ++++ R++ GD +K Y S ++T+
Sbjct: 58 EGDWGTVGSIVFWNYVHDGEAKVAKERIEAVEPDKNLITFRVIEGD-LMKEYKSFLLTIQ 116
Query: 91 PEVIDGRPGTLV 102
G PG++V
Sbjct: 117 VTPKPGGPGSIV 128
>pdb|1BGY|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|M Chain M, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|A Chain A, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|A Chain A, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|2A06|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQQ|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|A Chain A, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|A Chain A, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|AA Chain a, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 446
Score = 26.2 bits (56), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 97 RPGTLV---IESFVVDVPDGNTKDETCYFVEALIKCNLKS---LADVSEHLAVQD 145
RPG + +ES + +T++ T Y+++AL K K+ LAD+ ++ +++D
Sbjct: 70 RPGNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLED 124
>pdb|1QCR|A Chain A, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 446
Score = 25.8 bits (55), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 97 RPGTLV---IESFVVDVPDGNTKDETCYFVEALIKCNLKS---LADVSEHLAVQD 145
RPG + +ES + +T++ T Y+++AL K K+ LAD+ ++ +++D
Sbjct: 70 RPGNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLED 124
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,725,368
Number of Sequences: 62578
Number of extensions: 185971
Number of successful extensions: 449
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 383
Number of HSP's gapped (non-prelim): 36
length of query: 153
length of database: 14,973,337
effective HSP length: 90
effective length of query: 63
effective length of database: 9,341,317
effective search space: 588502971
effective search space used: 588502971
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)