Query 031801
Match_columns 153
No_of_seqs 133 out of 930
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 05:32:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031801.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031801hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07816 Bet_v1-like Ligand-bin 99.9 2.3E-25 5E-30 161.8 17.8 110 1-113 7-122 (148)
2 cd07821 PYR_PYL_RCAR_like Pyra 99.8 1.1E-18 2.4E-23 122.9 16.2 133 1-139 7-140 (140)
3 PF00407 Bet_v_1: Pathogenesis 99.8 2.2E-18 4.7E-23 125.8 15.5 106 2-110 11-122 (151)
4 PF10604 Polyketide_cyc2: Poly 99.8 8.7E-18 1.9E-22 118.3 17.9 130 1-139 8-139 (139)
5 cd08866 SRPBCC_11 Ligand-bindi 99.7 2.2E-16 4.8E-21 112.6 16.2 135 1-140 5-144 (144)
6 cd08865 SRPBCC_10 Ligand-bindi 99.7 3.9E-15 8.5E-20 104.5 15.2 131 1-140 5-140 (140)
7 cd08861 OtcD1_ARO-CYC_like N-t 99.7 4.2E-15 9E-20 105.8 14.5 133 1-140 5-142 (142)
8 cd08862 SRPBCC_Smu440-like Lig 99.7 9.4E-15 2E-19 103.0 16.1 130 1-140 7-138 (138)
9 cd07822 SRPBCC_4 Ligand-bindin 99.6 2E-13 4.4E-18 95.9 15.8 134 1-139 6-141 (141)
10 cd07819 SRPBCC_2 Ligand-bindin 99.6 2.3E-13 5.1E-18 95.9 16.0 129 1-137 8-139 (140)
11 cd07818 SRPBCC_1 Ligand-bindin 99.6 4.5E-13 9.7E-18 96.2 15.3 132 1-140 8-150 (150)
12 cd08860 TcmN_ARO-CYC_like N-te 99.5 3.9E-13 8.5E-18 97.5 14.4 136 1-142 7-146 (146)
13 cd07813 COQ10p_like Coenzyme Q 99.5 2.6E-13 5.7E-18 96.4 13.0 131 1-140 5-137 (138)
14 cd07817 SRPBCC_8 Ligand-bindin 99.5 5.1E-13 1.1E-17 94.2 13.8 129 1-139 6-138 (139)
15 cd07814 SRPBCC_CalC_Aha1-like 99.5 2.8E-12 6.1E-17 90.2 12.8 133 1-140 6-139 (139)
16 cd07825 SRPBCC_7 Ligand-bindin 99.4 8.1E-12 1.8E-16 88.9 12.8 133 1-139 6-144 (144)
17 cd07824 SRPBCC_6 Ligand-bindin 99.4 2.6E-11 5.7E-16 87.2 15.0 127 2-137 8-145 (146)
18 cd07812 SRPBCC START/RHO_alpha 99.4 8E-11 1.7E-15 80.6 15.5 130 1-136 5-139 (141)
19 cd05018 CoxG Carbon monoxide d 99.3 3.1E-11 6.7E-16 85.4 11.6 132 2-139 8-144 (144)
20 PF03364 Polyketide_cyc: Polyk 99.3 1.2E-10 2.6E-15 81.6 13.0 127 3-135 1-130 (130)
21 cd07820 SRPBCC_3 Ligand-bindin 99.2 7.1E-10 1.5E-14 78.9 14.0 106 1-113 5-114 (137)
22 cd07823 SRPBCC_5 Ligand-bindin 99.2 4.9E-10 1.1E-14 80.5 12.2 132 2-139 6-145 (146)
23 PRK10724 hypothetical protein; 99.1 5E-09 1.1E-13 77.0 12.8 128 2-143 22-152 (158)
24 cd08893 SRPBCC_CalC_Aha1-like_ 99.0 2.1E-08 4.6E-13 70.3 12.6 127 1-140 6-136 (136)
25 cd08898 SRPBCC_CalC_Aha1-like_ 99.0 1.6E-08 3.4E-13 71.8 11.9 130 1-140 7-145 (145)
26 cd08899 SRPBCC_CalC_Aha1-like_ 99.0 4.8E-09 1E-13 76.5 9.4 122 2-142 18-139 (157)
27 cd08894 SRPBCC_CalC_Aha1-like_ 98.8 1.8E-07 3.8E-12 66.6 12.0 129 2-140 7-139 (139)
28 cd08891 SRPBCC_CalC Ligand-bin 98.7 7.6E-07 1.7E-11 64.1 12.7 131 1-140 6-149 (149)
29 cd08896 SRPBCC_CalC_Aha1-like_ 98.7 7.1E-07 1.5E-11 64.0 12.5 129 2-139 7-145 (146)
30 cd08897 SRPBCC_CalC_Aha1-like_ 98.7 4.7E-07 1E-11 64.0 11.3 122 2-140 7-133 (133)
31 cd08900 SRPBCC_CalC_Aha1-like_ 98.7 1.4E-06 3E-11 62.3 13.6 128 2-140 7-143 (143)
32 cd07826 SRPBCC_CalC_Aha1-like_ 98.7 1.6E-06 3.5E-11 62.1 13.3 131 2-139 7-141 (142)
33 COG3427 Carbon monoxide dehydr 98.6 2.3E-06 5E-11 61.8 11.7 101 2-109 8-111 (146)
34 PF08327 AHSA1: Activator of H 98.5 7E-06 1.5E-10 56.5 13.7 122 4-139 1-124 (124)
35 cd08895 SRPBCC_CalC_Aha1-like_ 98.5 1E-05 2.2E-10 57.9 14.8 127 2-139 7-145 (146)
36 cd08876 START_1 Uncharacterize 98.5 1.8E-05 4E-10 59.2 16.3 134 2-138 48-194 (195)
37 cd08901 SRPBCC_CalC_Aha1-like_ 98.5 2E-06 4.4E-11 61.0 10.0 126 1-141 6-133 (136)
38 COG2867 Oligoketide cyclase/li 98.5 2.9E-06 6.4E-11 61.0 10.7 132 2-145 9-142 (146)
39 cd08892 SRPBCC_Aha1 Putative h 98.3 1.3E-05 2.8E-10 56.3 11.2 117 2-139 7-125 (126)
40 PF06240 COXG: Carbon monoxide 98.3 1.2E-05 2.6E-10 57.6 10.8 127 2-137 4-138 (140)
41 COG5637 Predicted integral mem 98.3 1.9E-05 4.1E-10 58.8 11.5 131 1-143 76-213 (217)
42 COG3832 Uncharacterized conser 98.2 3.3E-05 7.2E-10 56.0 11.1 92 2-96 15-108 (149)
43 PTZ00220 Activator of HSP-90 A 97.8 0.00041 8.8E-09 49.2 10.2 87 3-101 1-90 (132)
44 PF08982 DUF1857: Domain of un 97.5 0.0064 1.4E-07 44.3 12.9 60 6-71 19-79 (149)
45 cd08905 START_STARD1-like Chol 97.3 0.019 4.2E-07 43.8 13.8 136 2-140 56-208 (209)
46 cd08906 START_STARD3-like Chol 96.9 0.099 2.1E-06 39.9 14.8 136 2-140 56-208 (209)
47 cd08874 START_STARD9-like C-te 96.9 0.11 2.4E-06 39.7 14.9 31 2-32 52-82 (205)
48 cd08877 START_2 Uncharacterize 96.2 0.22 4.8E-06 37.9 12.3 133 2-140 53-214 (215)
49 COG4276 Uncharacterized conser 96.1 0.33 7.1E-06 34.8 13.3 128 2-136 9-148 (153)
50 cd08863 SRPBCC_DUF1857 DUF1857 95.9 0.41 8.8E-06 34.6 15.3 63 6-75 18-82 (141)
51 cd08913 START_STARD14-like Lip 95.7 0.38 8.2E-06 37.7 11.8 31 2-32 88-118 (240)
52 cd08873 START_STARD14_15-like 95.5 0.53 1.1E-05 36.8 12.1 101 2-104 84-201 (235)
53 cd08868 START_STARD1_3_like Ch 95.4 0.86 1.9E-05 34.4 15.3 138 2-141 55-208 (208)
54 cd08903 START_STARD5-like Lipi 95.1 1 2.3E-05 34.2 15.1 136 2-140 53-207 (208)
55 PF10698 DUF2505: Protein of u 95.1 0.86 1.9E-05 33.1 14.6 126 2-137 6-154 (159)
56 cd08871 START_STARD10-like Lip 94.9 1.2 2.7E-05 33.9 15.7 135 4-142 57-204 (222)
57 cd08870 START_STARD2_7-like Li 94.5 1.6 3.4E-05 33.1 14.8 132 4-139 60-207 (209)
58 cd08911 START_STARD7-like Lipi 94.1 1.9 4.2E-05 32.7 14.4 134 3-140 54-206 (207)
59 KOG3177 Oligoketide cyclase/li 93.7 2.2 4.7E-05 32.8 11.0 85 2-93 75-164 (227)
60 cd08869 START_RhoGAP C-termina 92.3 3.8 8.3E-05 30.8 14.4 130 2-139 51-195 (197)
61 cd08904 START_STARD6-like Lipi 92.0 4.4 9.5E-05 30.9 14.0 134 2-138 53-203 (204)
62 cd08914 START_STARD15-like Lip 92.0 3 6.4E-05 32.7 10.1 31 2-32 85-115 (236)
63 cd00177 START Lipid-binding ST 91.9 3.6 7.7E-05 29.7 16.8 31 2-32 46-76 (193)
64 cd08867 START_STARD4_5_6-like 90.5 5.9 0.00013 29.7 15.5 134 2-138 53-205 (206)
65 cd08902 START_STARD4-like Lipi 89.2 8.3 0.00018 29.5 13.3 134 2-138 54-201 (202)
66 smart00234 START in StAR and p 87.9 9.2 0.0002 28.3 15.7 134 2-140 52-202 (206)
67 cd08910 START_STARD2-like Lipi 86.5 12 0.00026 28.3 10.8 132 2-139 56-205 (207)
68 cd08908 START_STARD12-like C-t 86.1 13 0.00029 28.3 12.4 130 2-139 59-202 (204)
69 KOG2936 Uncharacterized conser 81.5 16 0.00034 29.7 8.6 109 3-128 181-290 (301)
70 PF01852 START: START domain; 65.3 52 0.0011 24.1 15.6 132 2-142 53-204 (206)
71 PF02922 CBM_48: Carbohydrate- 28.0 1.5E+02 0.0033 18.3 5.9 55 20-77 15-74 (85)
72 cd05703 S1_Rrp5_repeat_hs12_sc 22.2 2E+02 0.0043 17.6 3.9 21 53-73 51-71 (73)
73 PF10313 DUF2415: Uncharacteri 20.2 1.6E+02 0.0034 16.8 2.7 11 39-49 1-11 (43)
No 1
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=99.94 E-value=2.3e-25 Score=161.83 Aligned_cols=110 Identities=17% Similarity=0.302 Sum_probs=94.9
Q ss_pred CeecCChHHHHHHHhcCCC-C-CccCCceeEEEE-EcCCCCCeEEEEEeecCCCCceEEEEEEEEeCCCCEEEEEEecCC
Q 031801 1 MIVGILDNQVWSLVRRFDQ-P-QKYKPFVSRCIV-QGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGD 77 (153)
Q Consensus 1 ~vI~ap~~~VW~~v~df~~-~-~~w~p~v~~~~~-~G~~~vG~~R~~~~~~G~~~~~~~E~l~~~D~~~~~~~y~i~~g~ 77 (153)
+.|+|||++||++++||.+ + +.|+|.|++|++ +|++++|++|.++|.+|.+...++|||+++|+++|+++|++++|+
T Consensus 7 ~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~~~~~~~~~kE~l~~~D~~~~~~~y~vveg~ 86 (148)
T cd07816 7 VELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGPGGKVKYVKERIDAVDEENKTYKYTVIEGD 86 (148)
T ss_pred EEecCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCceEEEEEEcCCCcceEEEEEEEEEcccccEEEEEEEecc
Confidence 4699999999999999994 5 679999999996 788889999999999775557899999999999999999999998
Q ss_pred C---CceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCC
Q 031801 78 H---RLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDG 113 (153)
Q Consensus 78 ~---p~~~y~ati~v~p~~~~g~~~t~~~~~~~~~~~~~ 113 (153)
+ ++++|.++++|.|.++++ |++.|+..|++..+
T Consensus 87 ~~~~~~~~y~~t~~v~~~~~~~---t~v~Wt~~ye~~~~ 122 (148)
T cd07816 87 VLKDGYKSYKVEIKFVPKGDGG---CVVKWTIEYEKKGD 122 (148)
T ss_pred cccCceEEEEEEEEEEECCCCC---EEEEEEEEEEECCC
Confidence 6 599999999999986344 67778888875433
No 2
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.82 E-value=1.1e-18 Score=122.87 Aligned_cols=133 Identities=32% Similarity=0.529 Sum_probs=110.2
Q ss_pred CeecCChHHHHHHHhcCCCCCccCCceeEEEEE-cCCCCCeEEEEEeecCCCCceEEEEEEEEeCCCCEEEEEEecCCCC
Q 031801 1 MIVGILDNQVWSLVRRFDQPQKYKPFVSRCIVQ-GDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHR 79 (153)
Q Consensus 1 ~vI~ap~~~VW~~v~df~~~~~w~p~v~~~~~~-G~~~vG~~R~~~~~~G~~~~~~~E~l~~~D~~~~~~~y~i~~g~~p 79 (153)
++|+||+++||+++.|+.+++.|+|.+.++++. +..++|+.+.+++..| ..+++++.++|+.++++.|++.+++.|
T Consensus 7 ~~i~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~~g---~~~~~~i~~~~~~~~~i~~~~~~~~~~ 83 (140)
T cd07821 7 VTIDAPADKVWALLSDFGGLHKWHPAVASCELEGGGPGVGAVRTVTLKDG---GTVRERLLALDDAERRYSYRIVEGPLP 83 (140)
T ss_pred EEECCCHHHHHHHHhCcCchhhhccCcceEEeecCCCCCCeEEEEEeCCC---CEEEEEehhcCccCCEEEEEecCCCCC
Confidence 369999999999999999999999999988875 3335899999988766 678999999998768999999988778
Q ss_pred ceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 031801 80 LKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSE 139 (153)
Q Consensus 80 ~~~y~ati~v~p~~~~g~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~e 139 (153)
+.++.+++++.|.++++| .+.++..++++.+.....+..++...+..+|++|++.+|
T Consensus 84 ~~~~~~~~~~~~~~~~~t---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~ 140 (140)
T cd07821 84 VKNYVATIRVTPEGDGGT---RVTWTAEFDPPEGLTDELARAFLTGVYRAGLAALKAALE 140 (140)
T ss_pred cccceEEEEEEECCCCcc---EEEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHHHhhC
Confidence 889999999999874454 555666666543344567789999999999999999875
No 3
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=99.81 E-value=2.2e-18 Score=125.78 Aligned_cols=106 Identities=21% Similarity=0.334 Sum_probs=87.0
Q ss_pred eecCChHHHHHHHhcCCCC-CccCCc-eeEEEE-EcCCCCC-eEEEEEeecCCCCceEEEEEEEEeCCCCEEEEEEecCC
Q 031801 2 IVGILDNQVWSLVRRFDQP-QKYKPF-VSRCIV-QGDLQIG-SVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGD 77 (153)
Q Consensus 2 vI~ap~~~VW~~v~df~~~-~~w~p~-v~~~~~-~G~~~vG-~~R~~~~~~G~~~~~~~E~l~~~D~~~~~~~y~i~~g~ 77 (153)
.+++||+++|+++....++ |+-+|. |+++++ +|++++| ++|.++|..|++...++||++.+|+++++++|++++|+
T Consensus 11 ~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~~~Kekve~~D~~~~~~~y~viEGd 90 (151)
T PF00407_consen 11 EVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFKYVKEKVEAIDEENKTITYTVIEGD 90 (151)
T ss_dssp EESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEEEEEEEEEEEETTTTEEEEEEEEET
T ss_pred EecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcceeEEEEEeecCCCcEEEEEEEecc
Confidence 5799999999999975554 888885 699986 8988777 99999999777778999999999999999999999998
Q ss_pred C--CceeeEEEEEEEeecCCCcceEEEEEEEEeeC
Q 031801 78 H--RLKNYSSIVTVHPEVIDGRPGTLVIESFVVDV 110 (153)
Q Consensus 78 ~--p~~~y~ati~v~p~~~~g~~~t~~~~~~~~~~ 110 (153)
+ .+..|..++++.|.+++|| +.-|+..|++
T Consensus 91 ~l~~~~~~~~~~~~~~~~~g~~---v~k~t~~Ye~ 122 (151)
T PF00407_consen 91 VLGDYKSFKSTIQKIPKGDGGC---VVKWTIEYEK 122 (151)
T ss_dssp TGTTTEEEEEEEEEEEETTSCE---EEEEEEEEEE
T ss_pred ccccEEEEEEEEEecCCCCCce---EEEEEEEEEe
Confidence 4 5789999999998875554 5555666654
No 4
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.81 E-value=8.7e-18 Score=118.26 Aligned_cols=130 Identities=21% Similarity=0.184 Sum_probs=102.9
Q ss_pred CeecCChHHHHHHHhcCCCCCccCCceeEEEEEcCCCCCeEEEEEeecCCCCceEEEEEEEEeCCCCEEEEEEecCCCCc
Q 031801 1 MIVGILDNQVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRL 80 (153)
Q Consensus 1 ~vI~ap~~~VW~~v~df~~~~~w~p~v~~~~~~G~~~vG~~R~~~~~~G~~~~~~~E~l~~~D~~~~~~~y~i~~g~~p~ 80 (153)
++|+|||++||++++|+.+++.|.|.+.++++.+++++|..+.++.. |. ..++++++.++++++.+.|++. ..|+
T Consensus 8 ~~v~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~-g~--~~~~~~i~~~~~~~~~~~~~~~--~~~~ 82 (139)
T PF10604_consen 8 IEVPAPPEAVWDLLSDPENWPRWWPGVKSVELLSGGGPGTERTVRVA-GR--GTVREEITEYDPEPRRITWRFV--PSGF 82 (139)
T ss_dssp EEESS-HHHHHHHHTTTTGGGGTSTTEEEEEEEEECSTEEEEEEEEC-SC--SEEEEEEEEEETTTTEEEEEEE--SSSS
T ss_pred EEECCCHHHHHHHHhChhhhhhhhhceEEEEEccccccceeEEEEec-cc--cceeEEEEEecCCCcEEEEEEE--ecce
Confidence 36999999999999999999999999999987542345666667654 42 4799999999987899999996 4578
Q ss_pred eeeEEEEEEEeecCCCcceEEEEEEEEeeC-CCCCC-HHHHHHHHHHHHHHHHHHHHHHHh
Q 031801 81 KNYSSIVTVHPEVIDGRPGTLVIESFVVDV-PDGNT-KDETCYFVEALIKCNLKSLADVSE 139 (153)
Q Consensus 81 ~~y~ati~v~p~~~~g~~~t~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~l~~L~~~~e 139 (153)
.++..++++.|.+ +|| .+.|+..+++ +.+.. ...++.++.+.++..|++|++.+|
T Consensus 83 ~~~~~~~~~~~~~-~gt---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~E 139 (139)
T PF10604_consen 83 TNGTGRWRFEPVG-DGT---RVTWTVEFEPGLPGWLAGPLLRPAVKRIVREALENLKRAAE 139 (139)
T ss_dssp CEEEEEEEEEEET-TTE---EEEEEEEEEESCTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEEEEcC-CCE---EEEEEEEEEEeccchhhHHHHHHHHHHHHHHHHHHHhcccC
Confidence 8899999999988 665 4455555553 33433 456789999999999999999987
No 5
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.74 E-value=2.2e-16 Score=112.61 Aligned_cols=135 Identities=16% Similarity=0.170 Sum_probs=96.9
Q ss_pred CeecCChHHHHHHHhcCCCCCccCCceeEEEE-EcCCCCCeEEEEEeecCC----CCceEEEEEEEEeCCCCEEEEEEec
Q 031801 1 MIVGILDNQVWSLVRRFDQPQKYKPFVSRCIV-QGDLQIGSVREVNVKSGL----PATTSTERLELLDDEEHIFGMRIVG 75 (153)
Q Consensus 1 ~vI~ap~~~VW~~v~df~~~~~w~p~v~~~~~-~G~~~vG~~R~~~~~~G~----~~~~~~E~l~~~D~~~~~~~y~i~~ 75 (153)
+.|+|||++||+++.||+++++|+|.+.+|++ ++.+ .+...+.....+. -...+..++.+.++.++.++|++++
T Consensus 5 ~~i~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~ 83 (144)
T cd08866 5 VRVPAPPETVWAVLTDYDNLAEFIPNLAESRLLERNG-NRVVLEQTGKQGILFFKFEARVVLELREREEFPRELDFEMVE 83 (144)
T ss_pred EEECCCHHHHHHHHhChhhHHhhCcCceEEEEEEcCC-CEEEEEEeeeEEEEeeeeeEEEEEEEEEecCCCceEEEEEcC
Confidence 46999999999999999999999999999986 4321 1221111100110 0023445566676656899999998
Q ss_pred CCCCceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031801 76 GDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEH 140 (153)
Q Consensus 76 g~~p~~~y~ati~v~p~~~~g~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~e~ 140 (153)
| ++..+.+++++.|.+++|. |.+.|...+++..+.....+..++...+...|++|++.+|+
T Consensus 84 g--~~~~~~g~w~~~~~~~~~~--t~v~~~~~~~~~~~~p~~l~~~~~~~~~~~~l~~lr~~ae~ 144 (144)
T cd08866 84 G--DFKRFEGSWRLEPLADGGG--TLLTYEVEVKPDFFAPVFLVEFVLRQDLPTNLLAIRAEAES 144 (144)
T ss_pred C--chhceEEEEEEEECCCCCe--EEEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7 5778999999999874233 56667777776445555677888999999999999999884
No 6
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.68 E-value=3.9e-15 Score=104.45 Aligned_cols=131 Identities=15% Similarity=0.138 Sum_probs=96.7
Q ss_pred CeecCChHHHHHHHhcCCCCCccCCceeEEEEE--cCCCCCeEEEEEee-cCCCCceEEEEEEEEeCCCCEEEEEEecCC
Q 031801 1 MIVGILDNQVWSLVRRFDQPQKYKPFVSRCIVQ--GDLQIGSVREVNVK-SGLPATTSTERLELLDDEEHIFGMRIVGGD 77 (153)
Q Consensus 1 ~vI~ap~~~VW~~v~df~~~~~w~p~v~~~~~~--G~~~vG~~R~~~~~-~G~~~~~~~E~l~~~D~~~~~~~y~i~~g~ 77 (153)
+.|+||+++||++++||.+++.|+|.+.+++.. +..++|+...+... .|. ...++++++.+++. +.+.|...+++
T Consensus 5 ~~i~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~-~~~~~~~v~~~~p~-~~~~~~~~~~~ 82 (140)
T cd08865 5 IVIERPVEEVFAYLADFENAPEWDPGVVEVEKITDGPVGVGTRYHQVRKFLGR-RIELTYEITEYEPG-RRVVFRGSSGP 82 (140)
T ss_pred EEEcCCHHHHHHHHHCccchhhhccCceEEEEcCCCCCcCccEEEEEEEecCc-eEEEEEEEEEecCC-cEEEEEecCCC
Confidence 369999999999999999999999999888763 33567888777654 332 13568899999974 88999987653
Q ss_pred CCceeeEEEEEEEeecCCCcceEEEEEEEEeeCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031801 78 HRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVP--DGNTKDETCYFVEALIKCNLKSLADVSEH 140 (153)
Q Consensus 78 ~p~~~y~ati~v~p~~~~g~~~t~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~L~~~~e~ 140 (153)
+ .+..++++.|.+ +|| .+.++..++.+ .......+...+...++..|++||+.+|+
T Consensus 83 --~-~~~~~~~~~~~~-~~t---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~ 140 (140)
T cd08865 83 --F-PYEDTYTFEPVG-GGT---RVRYTAELEPGGFARLLDPLMAPAFRRRARAALENLKALLEA 140 (140)
T ss_pred --c-ceEEEEEEEEcC-Cce---EEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhC
Confidence 3 468889999976 555 33445445431 12223456778888899999999999885
No 7
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.67 E-value=4.2e-15 Score=105.77 Aligned_cols=133 Identities=14% Similarity=0.054 Sum_probs=94.6
Q ss_pred CeecCChHHHHHHHhcCCCCCccCCceeEEE-EEcCCCCC-eEEEEEee-cCCCCceEEEEEEEEeCCCCEEEEEEecCC
Q 031801 1 MIVGILDNQVWSLVRRFDQPQKYKPFVSRCI-VQGDLQIG-SVREVNVK-SGLPATTSTERLELLDDEEHIFGMRIVGGD 77 (153)
Q Consensus 1 ~vI~ap~~~VW~~v~df~~~~~w~p~v~~~~-~~G~~~vG-~~R~~~~~-~G~~~~~~~E~l~~~D~~~~~~~y~i~~g~ 77 (153)
++|+||+++||+++.||.+++.|+|. .+++ +++.+ .| ..+.+... .|. ..-.+....+|+..+++.|..+++.
T Consensus 5 ~~i~ap~~~V~~~l~D~~~~p~~~p~-~~~~~~~~~~-~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~i~~~~~~~~ 80 (142)
T cd08861 5 VTVAAPAEDVYDLLADAERWPEFLPT-VHVERLELDG-GVERLRMWATAFDGS--VHTWTSRRVLDPEGRRIVFRQEEPP 80 (142)
T ss_pred EEEcCCHHHHHHHHHhHHhhhccCCC-ceEEEEEEcC-CEEEEEEEEEcCCCc--EEEEEEEEEEcCCCCEEEEEEeeCC
Confidence 47999999999999999999999998 4444 44321 12 34434443 332 2222445567887789999998765
Q ss_pred CCceeeEEEEEEEeecCCCcceEEEEEEEEeeC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031801 78 HRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDV--PDGNTKDETCYFVEALIKCNLKSLADVSEH 140 (153)
Q Consensus 78 ~p~~~y~ati~v~p~~~~g~~~t~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~L~~~~e~ 140 (153)
.++..+.+++++.|.++++| .+.+...+++ +..+....+++.++..+...|++||+++|.
T Consensus 81 ~~~~~~~g~w~~~~~~~~~t---~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 142 (142)
T cd08861 81 PPVASMSGEWRFEPLGGGGT---RVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAAAER 142 (142)
T ss_pred CChhhheeEEEEEECCCCcE---EEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHHhhC
Confidence 57888999999999874444 4444444443 223555678899999999999999999984
No 8
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.67 E-value=9.4e-15 Score=102.98 Aligned_cols=130 Identities=16% Similarity=0.106 Sum_probs=97.1
Q ss_pred CeecCChHHHHHHHhcCCCCCccCCceeEEEEEcCC-CCCeEEEEEeecCCCCceEEEEEEEEeCCCCEEEEEEecCCCC
Q 031801 1 MIVGILDNQVWSLVRRFDQPQKYKPFVSRCIVQGDL-QIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHR 79 (153)
Q Consensus 1 ~vI~ap~~~VW~~v~df~~~~~w~p~v~~~~~~G~~-~vG~~R~~~~~~G~~~~~~~E~l~~~D~~~~~~~y~i~~g~~p 79 (153)
++|+||+++||++++||.+++.|+|.+.++++.++. ++|+...++...+ ..+..++.++++. ++++|+... +
T Consensus 7 ~~i~Ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~~~G~~~~~~~~~~---~~~~~~i~~~~p~-~~~~~~~~~---~ 79 (138)
T cd08862 7 IVIDAPPERVWAVLTDVENWPAWTPSVETVRLEGPPPAVGSSFKMKPPGL---VRSTFTVTELRPG-HSFTWTGPA---P 79 (138)
T ss_pred EEEcCCHHHHHHHHHhhhhcccccCcceEEEEecCCCCCCcEEEEecCCC---CceEEEEEEecCC-CEEEEEecC---C
Confidence 469999999999999999999999999999886544 6788766655433 4677889999975 678887644 2
Q ss_pred ceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031801 80 LKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDG-NTKDETCYFVEALIKCNLKSLADVSEH 140 (153)
Q Consensus 80 ~~~y~ati~v~p~~~~g~~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~L~~~~e~ 140 (153)
...+..++++++.++++ |.+.+.+.+..|.. .....+...++..++..|++||+.+|.
T Consensus 80 ~~~~~~~~~~~~~~~~~---t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 138 (138)
T cd08862 80 GISAVHRHEFEAKPDGG---VRVTTSESLSGPLAFLFGLFVGKKLRALLPEWLEGLKAAAEQ 138 (138)
T ss_pred CEEEEEEEEEEEcCCCc---EEEEEEEEeecchHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 34566788999876344 44445556654321 223457788899999999999999874
No 9
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.59 E-value=2e-13 Score=95.94 Aligned_cols=134 Identities=14% Similarity=0.078 Sum_probs=90.7
Q ss_pred CeecCChHHHHHHHhcCCCCCccCCceeEEEEEcCCCCCeEEEEEeecC-CCCceEEEEEEEEeCCCCEEEEEEecCCCC
Q 031801 1 MIVGILDNQVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSG-LPATTSTERLELLDDEEHIFGMRIVGGDHR 79 (153)
Q Consensus 1 ~vI~ap~~~VW~~v~df~~~~~w~p~v~~~~~~G~~~vG~~R~~~~~~G-~~~~~~~E~l~~~D~~~~~~~y~i~~g~~p 79 (153)
++|+||+++||+++.|+.+++.|+|.+..++... .++|....+.+..+ .....+.+++.++|+. +++.|+...++.+
T Consensus 6 ~~i~ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~-~~~G~~~~~~~~~~~~~~~~~~~~v~~~~p~-~~~~~~~~~~~~~ 83 (141)
T cd07822 6 IEINAPPEKVWEVLTDFPSYPEWNPFVRSATGLS-LALGARLRFVVKLPGGPPRSFKPRVTEVEPP-RRLAWRGGLPFPG 83 (141)
T ss_pred EEecCCHHHHHHHHhccccccccChhheeEeccc-cCCCCEEEEEEeCCCCCcEEEEEEEEEEcCC-CEeEEEecCCCCc
Confidence 4699999999999999999999999886665431 45788777766532 1224678899999985 7899998776544
Q ss_pred ceeeEEEEEEEeecCCCcceEEEEEEEEeeCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 031801 80 LKNYSSIVTVHPEVIDGRPGTLVIESFVVDVP-DGNTKDETCYFVEALIKCNLKSLADVSE 139 (153)
Q Consensus 80 ~~~y~ati~v~p~~~~g~~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~L~~~~e 139 (153)
......+++|.|.++++| .+.+...+..+ .......+...+...++..++.|++.+|
T Consensus 84 ~~~~~~~~~~~~~~~~~T---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~~~~E 141 (141)
T cd07822 84 LLDGEHSFELEPLGDGGT---RFVHRETFSGLLAPLVLLGLGRDLRAGFEAMNEALKARAE 141 (141)
T ss_pred EeeEEEEEEEEEcCCCcE---EEEEeeEEEEEEhHHhhhhhHHHHhHhHHHHHHHHHHhhC
Confidence 445678899999754555 33444343211 1112233455666666666777776654
No 10
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.58 E-value=2.3e-13 Score=95.90 Aligned_cols=129 Identities=12% Similarity=0.035 Sum_probs=83.4
Q ss_pred CeecCChHHHHHHHhcCCCCCccCCceeEEEE-Ec-CCCCCeEEEEEeecCCCCceEEEEEEEEeC-CCCEEEEEEecCC
Q 031801 1 MIVGILDNQVWSLVRRFDQPQKYKPFVSRCIV-QG-DLQIGSVREVNVKSGLPATTSTERLELLDD-EEHIFGMRIVGGD 77 (153)
Q Consensus 1 ~vI~ap~~~VW~~v~df~~~~~w~p~v~~~~~-~G-~~~vG~~R~~~~~~G~~~~~~~E~l~~~D~-~~~~~~y~i~~g~ 77 (153)
++|+|||++||+++.|+.++++|+|.+.++++ ++ +++.+...++++..+ ....+-+.+++. ..+.++|+..++.
T Consensus 8 ~~i~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~ 84 (140)
T cd07819 8 FEIEAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEMVRIGVGAY---GIKDTYALEYTWDGAGSVSWTLVEGE 84 (140)
T ss_pred EEEeCCHHHHHHHHhChhhhhhhCcceEEEEEeccCCCCCEEEEEEEEeee---eEEEEEEEEEEEcCCCcEEEEEeccc
Confidence 46999999999999999999999999999986 43 322233333444322 122222233332 2577999998864
Q ss_pred CCceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 031801 78 HRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADV 137 (153)
Q Consensus 78 ~p~~~y~ati~v~p~~~~g~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~ 137 (153)
+...+.+++++.|.+ +|| .+.|...+++........+..+........+++|++.
T Consensus 85 -~~~~~~~~~~~~~~~-~~t---~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (140)
T cd07819 85 -GNRSQEGSYTLTPKG-DGT---RVTFDLTVELTVPLPGFLKRKAEPLVLDEALKGLKKR 139 (140)
T ss_pred -ceeEEEEEEEEEECC-CCE---EEEEEEEEEecCCCCHHHHHHhhhHHHHHHHHhHhhh
Confidence 677889999999987 465 4445555543222233345556666666777777654
No 11
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.55 E-value=4.5e-13 Score=96.19 Aligned_cols=132 Identities=11% Similarity=0.052 Sum_probs=94.2
Q ss_pred CeecCChHHHHHHHhcCCCCCccCCceeEE---EE--E-cCCCCCeEEEEEeecCCCCceEEEEEEEEeCCCCEEEEEEe
Q 031801 1 MIVGILDNQVWSLVRRFDQPQKYKPFVSRC---IV--Q-GDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIV 74 (153)
Q Consensus 1 ~vI~ap~~~VW~~v~df~~~~~w~p~v~~~---~~--~-G~~~vG~~R~~~~~~G~~~~~~~E~l~~~D~~~~~~~y~i~ 74 (153)
++|+||+++||+++.|+.+++.|+|.+..+ .. . +..++|+...++...+. .....++.++++ ++++.|+..
T Consensus 8 ~~I~ap~e~V~~~i~D~~~~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~--~~~~~~v~~~~p-~~~i~~~~~ 84 (150)
T cd07818 8 IVINAPPEEVFPYVNDLKNWPEWSPWEKLDPDMKRTYSGPDSGVGASYSWEGNDKV--GEGEMEITESVP-NERIEYELR 84 (150)
T ss_pred EEEeCCHHHHHHHHhCcccCcccCchhhcCcceEEEecCCCCCCCeEEEEecCCcc--cceEEEEEecCC-CcEEEEEEE
Confidence 479999999999999999999999976543 22 1 23468887666654411 234567888887 478999997
Q ss_pred cCCCCc-eeeEEEEEEEeecCCCcceEEEEEEEEeeCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031801 75 GGDHRL-KNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDG----NTKDETCYFVEALIKCNLKSLADVSEH 140 (153)
Q Consensus 75 ~g~~p~-~~y~ati~v~p~~~~g~~~t~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~L~~~~e~ 140 (153)
.+. |. .++..++.+.|.+ +|| .+.++..++.+.+ .....+..+++..++.+|++||+.+|+
T Consensus 85 ~~~-~~~~~~~~~~~~~~~~-~gT---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 150 (150)
T cd07818 85 FIK-PFEATNDVEFTLEPVG-GGT---KVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVLEK 150 (150)
T ss_pred ecC-CccccceEEEEEEEcC-Cce---EEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhC
Confidence 532 34 3788999999995 665 4445555554322 222456788888899999999999985
No 12
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.54 E-value=3.9e-13 Score=97.47 Aligned_cols=136 Identities=10% Similarity=0.054 Sum_probs=91.8
Q ss_pred CeecCChHHHHHHHhcCCCCCccCCceeEEEE-E-cCCCCCeEEEEEee-cCCCCceEEEEEEEEeCCCCEEEEE-EecC
Q 031801 1 MIVGILDNQVWSLVRRFDQPQKYKPFVSRCIV-Q-GDLQIGSVREVNVK-SGLPATTSTERLELLDDEEHIFGMR-IVGG 76 (153)
Q Consensus 1 ~vI~ap~~~VW~~v~df~~~~~w~p~v~~~~~-~-G~~~vG~~R~~~~~-~G~~~~~~~E~l~~~D~~~~~~~y~-i~~g 76 (153)
|+|+|||++||+++.|+.++|.|.|.+.++++ + |+.++|..-++.+. +|....+..++ ..|+..+++.++ ...
T Consensus 7 i~i~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~~~~~~r~~i~~~~~g~~~~w~s~~--~~~~~~~~i~~~~~~~- 83 (146)
T cd08860 7 IVIDAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDGDTVRFRLTMHPDANGTVWSWVSER--TLDPVNRTVRARRVET- 83 (146)
T ss_pred EEEcCCHHHHHHHHHhhhhhhhhccceEEEEEEEecCCeEEEEEEEEeccCCEEEEEEEEE--EecCCCcEEEEEEecC-
Confidence 57999999999999999999999999999986 4 44445543223332 33211222221 257776777763 223
Q ss_pred CCCceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 031801 77 DHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEHLA 142 (153)
Q Consensus 77 ~~p~~~y~ati~v~p~~~~g~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~e~~~ 142 (153)
.|+....++.+++|.+ +||.+++... +++.....+....+.++++..+...|++||+++|+.|
T Consensus 84 -~p~~~m~~~W~f~~~~-~gT~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~aE~~~ 146 (146)
T cd08860 84 -GPFAYMNIRWEYTEVP-EGTRMRWVQD-FEMKPGAPVDDAAMTDRLNTNTRAQMARIKKKIEAAA 146 (146)
T ss_pred -CCcceeeeeEEEEECC-CCEEEEEEEE-EEECCCCccchHHHHHHHhcccHHHHHHHHHHhhhcC
Confidence 4788999999999986 5665555333 2231111233345778899999999999999999854
No 13
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.54 E-value=2.6e-13 Score=96.38 Aligned_cols=131 Identities=15% Similarity=0.168 Sum_probs=91.3
Q ss_pred CeecCChHHHHHHHhcCCCCCccCCceeEEEE-EcCCCCCeEEEEEee-cCCCCceEEEEEEEEeCCCCEEEEEEecCCC
Q 031801 1 MIVGILDNQVWSLVRRFDQPQKYKPFVSRCIV-QGDLQIGSVREVNVK-SGLPATTSTERLELLDDEEHIFGMRIVGGDH 78 (153)
Q Consensus 1 ~vI~ap~~~VW~~v~df~~~~~w~p~v~~~~~-~G~~~vG~~R~~~~~-~G~~~~~~~E~l~~~D~~~~~~~y~i~~g~~ 78 (153)
++|+||+++||+++.|+.++++|+|.+.++++ ++.+ .+...++... .|. ...+..++. +++ ++++.++.++|
T Consensus 5 ~~i~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~-~~~~~~~~~~~~~~-~~~~~~~~~-~~~-~~~i~~~~~~g-- 78 (138)
T cd07813 5 RLVPYSAEQMFDLVADVERYPEFLPWCTASRVLERDE-DELEAELTVGFGGI-RESFTSRVT-LVP-PESIEAELVDG-- 78 (138)
T ss_pred EEcCCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCC-CEEEEEEEEeeccc-cEEEEEEEE-ecC-CCEEEEEecCC--
Confidence 46899999999999999999999999999986 4322 3343344444 231 123344443 676 56889998887
Q ss_pred CceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031801 79 RLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEH 140 (153)
Q Consensus 79 p~~~y~ati~v~p~~~~g~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~e~ 140 (153)
++..+.+++++.|.++++ |.+.+...+++..+.....+..+++......|+++++++++
T Consensus 79 ~~~~~~g~w~~~p~~~~~---T~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~f~~~~~~ 137 (138)
T cd07813 79 PFKHLEGEWRFKPLGENA---CKVEFDLEFEFKSRLLEALAGLVFDEVAKKMVDAFEKRAKQ 137 (138)
T ss_pred ChhhceeEEEEEECCCCC---EEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 677899999999987444 55555666665433333445677777777788888777654
No 14
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.53 E-value=5.1e-13 Score=94.18 Aligned_cols=129 Identities=16% Similarity=0.171 Sum_probs=91.1
Q ss_pred CeecCChHHHHHHHhcCCCCCccCCceeEEEEEcCCCCCeEEEEEeecCCCCceEEEEEEEEeCCCCEEEEEEecCCCCc
Q 031801 1 MIVGILDNQVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRL 80 (153)
Q Consensus 1 ~vI~ap~~~VW~~v~df~~~~~w~p~v~~~~~~G~~~vG~~R~~~~~~G~~~~~~~E~l~~~D~~~~~~~y~i~~g~~p~ 80 (153)
++|+||+++||+++.|+.++++|+|.+.++++.++ .+....+....|.. ..+..++.++++. +.+.|....|. +
T Consensus 6 i~I~ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~g~~-~~~~~~v~~~~~~-~~i~~~~~~~~--~ 79 (139)
T cd07817 6 ITVNVPVEEVYDFWRDFENLPRFMSHVESVEQLDD--TRSHWKAKGPAGLS-VEWDAEITEQVPN-ERIAWRSVEGA--D 79 (139)
T ss_pred EEeCCCHHHHHHHHhChhhhHHHhhhhcEEEEcCC--CceEEEEecCCCCc-EEEEEEEeccCCC-CEEEEEECCCC--C
Confidence 47999999999999999999999999999987432 12333343333432 3456667777775 56999987764 3
Q ss_pred eeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCC----HHHHHHHHHHHHHHHHHHHHHHHh
Q 031801 81 KNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNT----KDETCYFVEALIKCNLKSLADVSE 139 (153)
Q Consensus 81 ~~y~ati~v~p~~~~g~~~t~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~L~~~~e 139 (153)
.+.+++.+.|.++++| .+.+...++++.+.. ...+..+++..++..|++||+.+|
T Consensus 80 -~~~~~~~f~~~~~~~T---~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~aE 138 (139)
T cd07817 80 -PNAGSVRFRPAPGRGT---RVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFKQLVE 138 (139)
T ss_pred -CcceEEEEEECCCCCe---EEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHHHHhh
Confidence 5778899999764344 444555566543222 234678888889999999999987
No 15
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.45 E-value=2.8e-12 Score=90.22 Aligned_cols=133 Identities=9% Similarity=-0.061 Sum_probs=89.8
Q ss_pred CeecCChHHHHHHHhcCCCCCccCCceeEEEEEcCCCCCeEEEEEeecCCCCceEEEEEEEEeCCCCEEEEEEecCCC-C
Q 031801 1 MIVGILDNQVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDH-R 79 (153)
Q Consensus 1 ~vI~ap~~~VW~~v~df~~~~~w~p~v~~~~~~G~~~vG~~R~~~~~~G~~~~~~~E~l~~~D~~~~~~~y~i~~g~~-p 79 (153)
++|+||+++||+++.|+.+++.|+|.+..+.++-.. .|+.+.+....++-...+..++.++|+. +.+.|+...++. +
T Consensus 6 ~~I~a~~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~-Gg~~~~~~~~~~g~~~~~~~~i~~~~~~-~~i~~~~~~~~~~~ 83 (139)
T cd07814 6 REFDAPPELVWRALTDPELLAQWFGPTTTAEMDLRV-GGRWFFFMTGPDGEEGWVSGEVLEVEPP-RRLVFTWAFSDETP 83 (139)
T ss_pred EEecCCHHHHHHHcCCHHHHHhhhCcCCceEEcccC-CceEEEEEECCCCCEEeccEEEEEEcCC-CeEEEEecccCCCC
Confidence 469999999999999999999999963333332111 1666654433211114578889999985 789999987653 4
Q ss_pred ceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031801 80 LKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEH 140 (153)
Q Consensus 80 ~~~y~ati~v~p~~~~g~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~e~ 140 (153)
......++.|.|.+ ++| .+.+...+.++.. ........+...+...|+.||+.+|.
T Consensus 84 ~~~~~~~~~~~~~~-~~T---~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~lk~~~E~ 139 (139)
T cd07814 84 GPETTVTVTLEETG-GGT---RLTLTHSGFPEED-AEQEAREGMEEGWTGTLDRLKALLEK 139 (139)
T ss_pred CCceEEEEEEEECC-CCE---EEEEEEEccChHh-HHHHHHhCHhhHHHHHHHHHHHHhhC
Confidence 55778889999987 565 3344443332211 12345566677788999999999884
No 16
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.41 E-value=8.1e-12 Score=88.92 Aligned_cols=133 Identities=15% Similarity=0.128 Sum_probs=85.9
Q ss_pred CeecCChHHHHHHHhcCCCCCccCCceeEEEE-Ec--CCCCCeEEEEEeec-CCCCceEEEEEEEEeCCCCEEEEEEecC
Q 031801 1 MIVGILDNQVWSLVRRFDQPQKYKPFVSRCIV-QG--DLQIGSVREVNVKS-GLPATTSTERLELLDDEEHIFGMRIVGG 76 (153)
Q Consensus 1 ~vI~ap~~~VW~~v~df~~~~~w~p~v~~~~~-~G--~~~vG~~R~~~~~~-G~~~~~~~E~l~~~D~~~~~~~y~i~~g 76 (153)
++|+|||++||+++.||.+++.|+|....... .+ +.++|....+.... |.+ ..+..+++++++. ++++|+....
T Consensus 6 ~~i~ap~e~Vw~~l~d~~~~~~W~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~-~~~~~~v~~~~p~-~~l~~~~~~~ 83 (144)
T cd07825 6 RTVDAPAEAVFAVLADPRRHPEIDGSGTVREAIDGPRILAVGDVFRMAMRLDGGP-YRITNHVVAFEEN-RLIAWRPGPA 83 (144)
T ss_pred EEEeCCHHHHHHHHhCccccceeCCCCccccccCCCccCCCCCEEEEEEEcCCCc-eEEEEEEEEECCC-CEEEEEccCC
Confidence 46999999999999999999999985322222 22 35788887666552 332 4566788999985 7799986422
Q ss_pred CCCceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHH--HHHHHHHHHHHHHHHHHHHHh
Q 031801 77 DHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDE--TCYFVEALIKCNLKSLADVSE 139 (153)
Q Consensus 77 ~~p~~~y~ati~v~p~~~~g~~~t~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~L~~~~e 139 (153)
..+......+++++|.++++| .+..+..|..... .... +......-++..|++|++.+|
T Consensus 84 ~~~~~~~~~~~~l~~~~~g~T---~vt~~~~~~g~~~-~~~~~~~~~~~~~g~~~~l~~L~~~~~ 144 (144)
T cd07825 84 GQEPGGHRWRWELEPIGPGRT---RVTETYDWSAVTD-LKELLGFPAFPEVQLEASLDRLATLAE 144 (144)
T ss_pred CCCCCceeEEEEEEECCCCcE---EEEEEEeccCChh-hhhccccCCCCHHHHHHHHHHHHHHhC
Confidence 223445566788998764444 4444555542211 1111 123345557889999998876
No 17
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.40 E-value=2.6e-11 Score=87.15 Aligned_cols=127 Identities=17% Similarity=0.216 Sum_probs=82.4
Q ss_pred eecCChHHHHHHHhcCCCCCccCCceeEEEE-E--cCCCCCeEEEEEeecCCC-CceEEEEEEEEeCCCCEEEEEEecCC
Q 031801 2 IVGILDNQVWSLVRRFDQPQKYKPFVSRCIV-Q--GDLQIGSVREVNVKSGLP-ATTSTERLELLDDEEHIFGMRIVGGD 77 (153)
Q Consensus 2 vI~ap~~~VW~~v~df~~~~~w~p~v~~~~~-~--G~~~vG~~R~~~~~~G~~-~~~~~E~l~~~D~~~~~~~y~i~~g~ 77 (153)
.|+|||++||++++|+.++++|+|.+.++++ + ++.++|+.-+.......+ ...+.-++.++++ .+.+.|.. .|+
T Consensus 8 ~i~ap~e~Vw~~~tD~~~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~~p-~~~~~~~~-~g~ 85 (146)
T cd07824 8 RIPAPPEAVWDVLVDAESWPDWWPGVERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRIEP-LSLLEVRA-SGD 85 (146)
T ss_pred EecCCHHHHHHHHhChhhcchhhhceEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEeecC-CcEEEEEE-EEe
Confidence 5899999999999999999999999999976 4 345677764443321111 1245566677777 47899985 453
Q ss_pred CCceeeEEEEEEEeecCCCcceEEEEEEEEeeCCC-------CCCHHHHHHHHHHHHHHHHHHHHHH
Q 031801 78 HRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPD-------GNTKDETCYFVEALIKCNLKSLADV 137 (153)
Q Consensus 78 ~p~~~y~ati~v~p~~~~g~~~t~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~L~~~ 137 (153)
+. ...+++|.|.+ +||.++ +...++.+. .+....+....+.+++..+++||+.
T Consensus 86 --~~-~~~~~~~~~~~-~gt~vt---~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~L~~~ 145 (146)
T cd07824 86 --LE-GVGRWTLAPDG-SGTVVR---YDWEVRTTKPWMNLLAPLARPVFRWNHRRVMRAGEKGLARR 145 (146)
T ss_pred --ee-EEEEEEEEEcC-CCEEEE---EEEEEEcCHHHHHhhhHhhhhHHHHhHHHHHHhHHHHHHhh
Confidence 33 36888999975 566333 344444321 2223345566666666677777665
No 18
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.37 E-value=8e-11 Score=80.59 Aligned_cols=130 Identities=18% Similarity=0.159 Sum_probs=87.9
Q ss_pred CeecCChHHHHHHHhcCCCCCccCCceeEEEEE--cCCCCCeEEEEEeecCCCCceEEEEEEEEeCCCCEEEEEEecCCC
Q 031801 1 MIVGILDNQVWSLVRRFDQPQKYKPFVSRCIVQ--GDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDH 78 (153)
Q Consensus 1 ~vI~ap~~~VW~~v~df~~~~~w~p~v~~~~~~--G~~~vG~~R~~~~~~G~~~~~~~E~l~~~D~~~~~~~y~i~~g~~ 78 (153)
+.|+||+++||+++.|+.+++.|+|.+.++++. +....|....+.+..+. ......++..+++ +..++|....++.
T Consensus 5 ~~i~a~~~~v~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~-~~~~~~~~~~~~~ 82 (141)
T cd07812 5 IEIPAPPEAVWDLLSDPERWPEWSPGLERVEVLGGGEGGVGARFVGGRKGGR-RLTLTSEVTEVDP-PRPGRFRVTGGGG 82 (141)
T ss_pred EEeCCCHHHHHHHHhChhhhhhhCcccceEEEcCCCCccceeEEEEEecCCc-cccceEEEEEecC-CCceEEEEecCCC
Confidence 368999999999999999999999999999864 23456666655543121 1457788888887 5789999987765
Q ss_pred CceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCC---CHHHHHHHHHHHHHHHHHHHHH
Q 031801 79 RLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGN---TKDETCYFVEALIKCNLKSLAD 136 (153)
Q Consensus 79 p~~~y~ati~v~p~~~~g~~~t~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~L~~ 136 (153)
+ ..+..++.+.+.++++| .+.+...++++... ....+.+.+...+...++++++
T Consensus 83 ~-~~~~~~~~~~~~~~~~t---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T cd07812 83 G-VDGTGEWRLEPEGDGGT---RVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRALKA 139 (141)
T ss_pred C-cceeEEEEEEECCCCcE---EEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHHHHh
Confidence 4 57888899999873254 44555566543322 2334445555555555555543
No 19
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.33 E-value=3.1e-11 Score=85.38 Aligned_cols=132 Identities=14% Similarity=0.097 Sum_probs=83.8
Q ss_pred eecCChHHHHHHHhcCCCCCccCCceeEEEEEcCCCCCeEEEEEeecCCC-CceEEEEEEEEeCCCCEEEEEEec-CCCC
Q 031801 2 IVGILDNQVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLP-ATTSTERLELLDDEEHIFGMRIVG-GDHR 79 (153)
Q Consensus 2 vI~ap~~~VW~~v~df~~~~~w~p~v~~~~~~G~~~vG~~R~~~~~~G~~-~~~~~E~l~~~D~~~~~~~y~i~~-g~~p 79 (153)
.|++|+++||+++.|+.++++|+|.+.++++.+++.......+.+ .+.. .-..+-++.++++. +++.+.... +...
T Consensus 8 ~i~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 85 (144)
T cd05018 8 RIPAPPEEVWAALNDPEVLARCIPGCESLEKIGPNEYEATVKLKV-GPVKGTFKGKVELSDLDPP-ESYTITGEGKGGAG 85 (144)
T ss_pred EecCCHHHHHHHhcCHHHHHhhccchhhccccCCCeEEEEEEEEE-ccEEEEEEEEEEEEecCCC-cEEEEEEEEcCCCc
Confidence 689999999999999999999999998887543221111112222 1100 01234566666764 677777654 2233
Q ss_pred ceeeEEEEEEEeecCCCcceEEEEEEEEeeCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 031801 80 LKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPD---GNTKDETCYFVEALIKCNLKSLADVSE 139 (153)
Q Consensus 80 ~~~y~ati~v~p~~~~g~~~t~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~L~~~~e 139 (153)
...+..++.+.|.+ +|| .+.|...+++.. .+....+..+...++...+++|++.++
T Consensus 86 ~~~~~~~~~l~~~~-~gT---~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (144)
T cd05018 86 FVKGTARVTLEPDG-GGT---RLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFENLASKIG 144 (144)
T ss_pred eEEEEEEEEEEecC-CcE---EEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 56899999999984 665 444454554321 123345667777888888888888763
No 20
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=99.30 E-value=1.2e-10 Score=81.57 Aligned_cols=127 Identities=20% Similarity=0.231 Sum_probs=79.3
Q ss_pred ecCChHHHHHHHhcCCCCCccCCceeEEEE-EcCCCCCeEEEEEeecCCCCceEEEEEEEEeCCCCEEEEEEecCCCCce
Q 031801 3 VGILDNQVWSLVRRFDQPQKYKPFVSRCIV-QGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLK 81 (153)
Q Consensus 3 I~ap~~~VW~~v~df~~~~~w~p~v~~~~~-~G~~~vG~~R~~~~~~G~~~~~~~E~l~~~D~~~~~~~y~i~~g~~p~~ 81 (153)
|+||+++||++++|+.+++.|+|.+.++++ +.++. +..-.+....+........++....+. . +.+..++| +++
T Consensus 1 V~ap~~~V~~~i~D~e~~~~~~p~~~~v~vl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~g--~~~ 75 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYENYPRFFPPVKEVRVLERDGD-GMRARWEVKFGGIKRSWTSRVTEDPPE-R-IRFEQISG--PFK 75 (130)
T ss_dssp ESS-HHHHHHHHTTGGGHHHHCTTEEEEEEEEEECC-EEEEEEEECTTTTCEEEEEEEEEECTT-T-EEEESSET--TEE
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCC-eEEEEEEEecCCEEEEEEEEEEEEEee-e-eeeeecCC--Cch
Confidence 789999999999999999999999999986 43221 222233333222123455666655443 3 77777776 689
Q ss_pred eeEEEEEEEeecC--CCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 031801 82 NYSSIVTVHPEVI--DGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLA 135 (153)
Q Consensus 82 ~y~ati~v~p~~~--~g~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 135 (153)
.+.++.++.|.++ +|+ .|.+...+.++++.......+..+++......|++|+
T Consensus 76 ~~~g~W~~~~~~~~~~g~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (130)
T PF03364_consen 76 SFEGSWRFEPLGGNEGGT-RTRVTYDYEVDPPGPLPGFLARQFFRRDLRQMLEAFR 130 (130)
T ss_dssp EEEEEEEEEEETTECCEE-EEEEEEEEEEETSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcEEEEEEEECCCCcCCC-EEEEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999873 143 2333444455554333334455555665666555553
No 21
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.23 E-value=7.1e-10 Score=78.86 Aligned_cols=106 Identities=14% Similarity=0.138 Sum_probs=76.3
Q ss_pred CeecCChHHHHHHHhcCCCCCccCCceeEEEEEc----CCCCCeEEEEEeecCCCCceEEEEEEEEeCCCCEEEEEEecC
Q 031801 1 MIVGILDNQVWSLVRRFDQPQKYKPFVSRCIVQG----DLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGG 76 (153)
Q Consensus 1 ~vI~ap~~~VW~~v~df~~~~~w~p~v~~~~~~G----~~~vG~~R~~~~~~G~~~~~~~E~l~~~D~~~~~~~y~i~~g 76 (153)
+.|+||+++||+++.|+.+++.|+|.+.++++.+ ...+|+.-.+++..++-.-..+-+++++++. +.+++..+.|
T Consensus 5 ~~I~ap~e~V~~~~~d~~~~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~~~w~~~it~~~p~-~~f~~~~~~G 83 (137)
T cd07820 5 TVIPAPIEEVFDFHSRPDNLERLTPPWLEFAVLGRTPGLIYGGARVTYRLRHFGIPQRWTTEITEVEPP-RRFVDEQVSG 83 (137)
T ss_pred EEcCCCHHHHHHHHcCcchHHhcCCCCCCeEEEecCCCcccCCcEEEEEEEecCCceEEEEEEEEEcCC-CeEEEEeccC
Confidence 4699999999999999999999999988887632 2345777666665331112446667888874 7799998877
Q ss_pred CCCceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCC
Q 031801 77 DHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDG 113 (153)
Q Consensus 77 ~~p~~~y~ati~v~p~~~~g~~~t~~~~~~~~~~~~~ 113 (153)
|+..+..+..+.|.+ +|| .+.....++.|.+
T Consensus 84 --~~~~w~h~~~f~~~~-~gT---~vt~~v~~~~p~g 114 (137)
T cd07820 84 --PFRSWRHTHRFEAIG-GGT---LMTDRVEYRLPLG 114 (137)
T ss_pred --CchhCEEEEEEEECC-Cce---EEEEEEEEeCCch
Confidence 566677788888876 454 5555666676543
No 22
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.20 E-value=4.9e-10 Score=80.53 Aligned_cols=132 Identities=18% Similarity=0.134 Sum_probs=81.5
Q ss_pred eecCChHHHHHHHhcCCCCCccCCceeEEEEEcCCCCCeEEEEEeecCCCCceE--EEEEEEEeCCCCEEEEEEecCCC-
Q 031801 2 IVGILDNQVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTS--TERLELLDDEEHIFGMRIVGGDH- 78 (153)
Q Consensus 2 vI~ap~~~VW~~v~df~~~~~w~p~v~~~~~~G~~~vG~~R~~~~~~G~~~~~~--~E~l~~~D~~~~~~~y~i~~g~~- 78 (153)
.|+|||++||++++|+.+++.|.|.+++.+..|++. ..-.++++-|.-...+ +=++..+++..+++.+.....+.
T Consensus 6 ~v~a~pe~vw~~l~D~~~~~~~~pg~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 83 (146)
T cd07823 6 TVPAPPDRVWALLLDIERVAPCLPGASLTEVEGDDE--YKGTVKVKLGPISASFKGTARLLEDDEAARRAVLEATGKDAR 83 (146)
T ss_pred EecCCHHHHHHHhcCHHHHHhcCCCceeccccCCCe--EEEEEEEEEccEEEEEEEEEEEEeccCCCcEEEEEEEEecCC
Confidence 689999999999999999999999988877644321 1122333322100112 22466666346888887654211
Q ss_pred --CceeeEEEEEEEeecCCCcceEEEEEEEEeeC--C-CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 031801 79 --RLKNYSSIVTVHPEVIDGRPGTLVIESFVVDV--P-DGNTKDETCYFVEALIKCNLKSLADVSE 139 (153)
Q Consensus 79 --p~~~y~ati~v~p~~~~g~~~t~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~l~~L~~~~e 139 (153)
..-....+++|.|.+ +|| .+.|...++. | ..+....+++..+.++...+++|++.+|
T Consensus 84 ~~g~~~~~~~~~l~~~~-~gT---~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~~e 145 (146)
T cd07823 84 GQGTAEATVTLRLSPAG-GGT---RVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEARLA 145 (146)
T ss_pred CcceEEEEEEEEEEecC-CcE---EEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHHhc
Confidence 112466678888843 554 4455444332 2 2233445677778888888888888876
No 23
>PRK10724 hypothetical protein; Provisional
Probab=99.08 E-value=5e-09 Score=76.98 Aligned_cols=128 Identities=16% Similarity=0.136 Sum_probs=84.8
Q ss_pred eecCChHHHHHHHhcCCCCCccCCceeEEEE-E-cCCCCCeEEEEEee-cCCCCceEEEEEEEEeCCCCEEEEEEecCCC
Q 031801 2 IVGILDNQVWSLVRRFDQPQKYKPFVSRCIV-Q-GDLQIGSVREVNVK-SGLPATTSTERLELLDDEEHIFGMRIVGGDH 78 (153)
Q Consensus 2 vI~ap~~~VW~~v~df~~~~~w~p~v~~~~~-~-G~~~vG~~R~~~~~-~G~~~~~~~E~l~~~D~~~~~~~y~i~~g~~ 78 (153)
+|++|++++|+++.|..++|.|+|.++++++ + .++ +....++.+ .|. ......+.. +++. +++.+..++|
T Consensus 22 ~v~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~~--~~~a~l~v~~~g~-~~~f~srv~-~~~~-~~I~~~~~~G-- 94 (158)
T PRK10724 22 LVPYSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTPG--QMTAAVDVSKAGI-SKTFTTRNQ-LTSN-QSILMQLVDG-- 94 (158)
T ss_pred EecCCHHHHHHHHHHHHHHHHhCcccCeEEEEEecCC--EEEEEEEEeeCCc-cEEEEEEEE-ecCC-CEEEEEecCC--
Confidence 6899999999999999999999999999986 3 222 233334443 232 233444444 4554 5899999988
Q ss_pred CceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 031801 79 RLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEHLAV 143 (153)
Q Consensus 79 p~~~y~ati~v~p~~~~g~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~e~~~~ 143 (153)
|++.+.+.++++|.++++|.+++ ...|+... ......++.+++...+.|-+++++.|.
T Consensus 95 pF~~l~g~W~f~p~~~~~t~V~~---~l~fef~s----~l~~~~~~~~~~~~~~~mv~AF~~Ra~ 152 (158)
T PRK10724 95 PFKKLIGGWKFTPLSQEACRIEF---HLDFEFTN----KLIELAFGRVFKELASNMVQAFTVRAK 152 (158)
T ss_pred ChhhccceEEEEECCCCCEEEEE---EEEEEEch----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999998744554433 44444322 223455556666666666666665543
No 24
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=98.98 E-value=2.1e-08 Score=70.25 Aligned_cols=127 Identities=16% Similarity=0.065 Sum_probs=78.4
Q ss_pred CeecCChHHHHHHHhcCCCCCccCCceeEEEEEcCCCCCeEEEEEeecCCCCceEEEEEEEEeCCCCEEEEEEecCCC--
Q 031801 1 MIVGILDNQVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDH-- 78 (153)
Q Consensus 1 ~vI~ap~~~VW~~v~df~~~~~w~p~v~~~~~~G~~~vG~~R~~~~~~G~~~~~~~E~l~~~D~~~~~~~y~i~~g~~-- 78 (153)
++|+|||++||+++.|+.+++.|.+... .+++..+|..-.+...+. ....+.-++.++++. +.+.|+...+..
T Consensus 6 ~~i~ap~e~Vw~~~td~~~~~~W~~~~~---~~~~~~~G~~~~~~~~~~-~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~ 80 (136)
T cd08893 6 TYIRATPEKVWQALTDPEFTRQYWGGTT---VESDWKVGSAFEYRRGDD-GTVDVEGEVLESDPP-RRLVHTWRAVWDPE 80 (136)
T ss_pred EEecCCHHHHHHHHcCchhhhheecccc---cccCCcCCCeEEEEeCCC-cccccceEEEEecCC-CeEEEEEecCCCcc
Confidence 4799999999999999999999987521 233334555434443331 013456678888875 677777653322
Q ss_pred --CceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031801 79 --RLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEH 140 (153)
Q Consensus 79 --p~~~y~ati~v~p~~~~g~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~e~ 140 (153)
+......++.+.|.+ +++ ++ ...... .+.+ ....+.+..-+...|+.|++.+|.
T Consensus 81 ~~~~~~~~v~~~l~~~~-~~t--~l-~~~~~~-~~~~---~~~~~~~~~gw~~~l~~Lk~~~e~ 136 (136)
T cd08893 81 MAAEPPSRVTFEIEPVG-DVV--KL-TVTHDG-FPPG---SPTLEGVSGGWPAILSSLKTLLET 136 (136)
T ss_pred cCCCCCEEEEEEEEecC-CcE--EE-EEEecC-CCCc---hhHHHhhhcCHHHHHHHHHHHhcC
Confidence 233577788888876 454 22 222222 1222 123455556677889999999874
No 25
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.98 E-value=1.6e-08 Score=71.76 Aligned_cols=130 Identities=14% Similarity=0.098 Sum_probs=79.2
Q ss_pred CeecCChHHHHHHHhcCCCCCccCCceeEEEEE-cCCCCCeEEEEEeecCCCCceEEEEEEEEeCCCCEEEEEEecCC--
Q 031801 1 MIVGILDNQVWSLVRRFDQPQKYKPFVSRCIVQ-GDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGD-- 77 (153)
Q Consensus 1 ~vI~ap~~~VW~~v~df~~~~~w~p~v~~~~~~-G~~~vG~~R~~~~~~G~~~~~~~E~l~~~D~~~~~~~y~i~~g~-- 77 (153)
++|+||+++||+++.|+..++.|++... +... |.+..| .+++.++ ......-++.++++. +.+.|+.....
T Consensus 7 i~i~a~~e~Vw~~~td~~~~~~W~~~~~-~~~~~~~~~~g---~~~~~~~-~~~~~~~~i~~~~p~-~~l~~~~~~~~~~ 80 (145)
T cd08898 7 ILIDAPRERVWRALTDPEHFGQWFGVKL-GPFVVGEGATG---EITYPGY-EHGVFPVTVVEVDPP-RRFSFRWHPPAID 80 (145)
T ss_pred EEecCCHHHHHHHhcChhhhhhcccccC-CCcccCCccee---EEecCCC-CccceEEEEEEeCCC-cEEEEEecCCCcc
Confidence 4799999999999999999999998542 2222 221122 2333332 113455688889885 78999875432
Q ss_pred --C---CceeeEEEEEEEeecCCCcceEEEEEEEE-eeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031801 78 --H---RLKNYSSIVTVHPEVIDGRPGTLVIESFV-VDVPDGNTKDETCYFVEALIKCNLKSLADVSEH 140 (153)
Q Consensus 78 --~---p~~~y~ati~v~p~~~~g~~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~e~ 140 (153)
. +......+++|.+.+ +|+.+++ +.. +........+.....+..-....|+.|++.||.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~-~gT~vt~---~~~~~~~~~~~~~~~~~~~~~~gw~~~l~~L~~~le~ 145 (145)
T cd08898 81 PGEDYSAEPSTLVEFTLEPIA-GGTLLTV---TESGFDALPAERRAEAYRMNEGGWDEQLENLVAYVEA 145 (145)
T ss_pred cccccCCCCceEEEEEEEecC-CcEEEEE---EEcCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHhcC
Confidence 1 123456888999976 5653433 222 321110111223455666688889999998873
No 26
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.98 E-value=4.8e-09 Score=76.49 Aligned_cols=122 Identities=16% Similarity=0.109 Sum_probs=81.6
Q ss_pred eecCChHHHHHHHhcCCCCCccCCceeEEEEEcCCCCCeEEEEEeecCCCCceEEEEEEEEeCCCCEEEEEEecCCCCce
Q 031801 2 IVGILDNQVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLK 81 (153)
Q Consensus 2 vI~ap~~~VW~~v~df~~~~~w~p~v~~~~~~G~~~vG~~R~~~~~~G~~~~~~~E~l~~~D~~~~~~~y~i~~g~~p~~ 81 (153)
+|+||+++||+++.|+.+++.|+|.. ..+..+|...++.+.... ......++.++|+. +.+.|+...++ .
T Consensus 18 ~i~Ap~e~Vw~altdp~~~~~W~~~~-----~~~~~~G~~~~~~~~~~~-~~~~~~~v~e~~p~-~~l~~~~~~~~---~ 87 (157)
T cd08899 18 LLPAPIEDVWAALTDPERLARWFAPG-----TGDLRVGGRVEFVMDDEE-GPNATGTILACEPP-RLLAFTWGEGG---G 87 (157)
T ss_pred ecCCCHHHHHHHHcCHHHHHhhcCCC-----CCCcccCceEEEEecCCC-CCccceEEEEEcCC-cEEEEEecCCC---C
Confidence 69999999999999999999999832 122345665555554310 14567788999985 78889886543 3
Q ss_pred eeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 031801 82 NYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEHLA 142 (153)
Q Consensus 82 ~y~ati~v~p~~~~g~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~e~~~ 142 (153)
....+++|++.+ +|+.++ ....+.+ .. .....+..-....|+.|++.+|+..
T Consensus 88 ~~~~~~~l~~~~-~gT~v~---~~~~~~~-~~----~~~~~~~~GW~~~L~~Lk~~~e~~~ 139 (157)
T cd08899 88 ESEVRFELAPEG-DGTRLT---LTHRLLD-ER----FGAGAVGAGWHLCLDVLEAALEGGP 139 (157)
T ss_pred CceEEEEEEEcC-CCEEEE---EEEeccC-ch----hhhhhhcccHHHHHHHHHHHHcCCC
Confidence 456678888865 555332 2332321 11 2344555568888999999999765
No 27
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.80 E-value=1.8e-07 Score=66.65 Aligned_cols=129 Identities=10% Similarity=0.005 Sum_probs=77.3
Q ss_pred eecCChHHHHHHHhcCCCCCccCC-c-eeEEEEEcCCCCCeEEEEEee--cCCCCceEEEEEEEEeCCCCEEEEEEecCC
Q 031801 2 IVGILDNQVWSLVRRFDQPQKYKP-F-VSRCIVQGDLQIGSVREVNVK--SGLPATTSTERLELLDDEEHIFGMRIVGGD 77 (153)
Q Consensus 2 vI~ap~~~VW~~v~df~~~~~w~p-~-v~~~~~~G~~~vG~~R~~~~~--~G~~~~~~~E~l~~~D~~~~~~~y~i~~g~ 77 (153)
.|+||+++||.++.|...+..|++ . ......+.+..+|..-++.+. +|. .....-+++++++. +++.|+...+
T Consensus 7 ~i~ap~e~Vw~a~t~p~~l~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~g~-~~~~~g~v~e~~p~-~~l~~t~~~~- 83 (139)
T cd08894 7 VIDAPRDLVFAAWTDPEHLAQWWGPEGFTNTTHEFDLRPGGRWRFVMHGPDGT-DYPNRIVFLEIEPP-ERIVYDHGSG- 83 (139)
T ss_pred EeCCCHHHHHHHhCCHHHHhhccCcCCCcceEEEEEecCCCEEEEEEECCCCC-EecceEEEEEEcCC-CEEEEEeccC-
Confidence 589999999999999999999974 2 222222222334444333332 342 12234578999985 7899987543
Q ss_pred CCceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031801 78 HRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEH 140 (153)
Q Consensus 78 ~p~~~y~ati~v~p~~~~g~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~e~ 140 (153)
+. ....+++++|.+ +|+.+++ +..+.. .+.....+...+.+-....|+.|++.+++
T Consensus 84 -~~-~~~v~~~~~~~~-~gT~ltl---~~~~~~-~~~~~~~~~~~~~~Gw~~~l~~L~~~l~~ 139 (139)
T cd08894 84 -PP-RFRLTVTFEEQG-GKTRLTW---RQVFPT-AAERCEKIKFGAVEGNEQTLDRLAAYLAR 139 (139)
T ss_pred -CC-cEEEEEEEEECC-CCEEEEE---EEEcCC-HHHHHHHHHhCHHHHHHHHHHHHHHHHhC
Confidence 21 255778888876 6664443 223422 11111223445566678888888888874
No 28
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=98.69 E-value=7.6e-07 Score=64.08 Aligned_cols=131 Identities=11% Similarity=-0.006 Sum_probs=73.4
Q ss_pred CeecCChHHHHHHHhcCCCCCccCC-c-------eeEEEEEcCCCCCeEEEEEeecCCCCceEEEEEEEEeCCCCEEEEE
Q 031801 1 MIVGILDNQVWSLVRRFDQPQKYKP-F-------VSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMR 72 (153)
Q Consensus 1 ~vI~ap~~~VW~~v~df~~~~~w~p-~-------v~~~~~~G~~~vG~~R~~~~~~G~~~~~~~E~l~~~D~~~~~~~y~ 72 (153)
++|+||+++||+.+++ .+..|++ . ...|+++ ..+|..-.+...+|. ....-++.++++. +++.|+
T Consensus 6 ~~i~Ap~e~Vw~a~t~--~l~~W~~p~~~~~~~~~~~~~~d--~~~GG~~~~~~~~g~--~~~~g~v~~v~p~-~~l~~t 78 (149)
T cd08891 6 VTVPAPPERAFEVFTE--GFGAWWPPEYHFVFSPGAEVVFE--PRAGGRWYEIGEDGT--ECEWGTVLAWEPP-SRLVFT 78 (149)
T ss_pred EEecCCHHHHHHHHHh--chhhccCCCcccccCCCccEEEc--ccCCcEEEEecCCCc--EeceEEEEEEcCC-CEEEEE
Confidence 4799999999999999 4778874 2 1344443 223333223222442 2345688889985 778887
Q ss_pred Ee-cCCC-Cc--eeeEEEEEEEeecCCCcceEEEEEEEEeeC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031801 73 IV-GGDH-RL--KNYSSIVTVHPEVIDGRPGTLVIESFVVDV-PDGNTKDETCYFVEALIKCNLKSLADVSEH 140 (153)
Q Consensus 73 i~-~g~~-p~--~~y~ati~v~p~~~~g~~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~L~~~~e~ 140 (153)
-. .... +. ..-..+++|+|.+++|+.+++.... +.. +++..+......+..=....|+.|++.+|+
T Consensus 79 w~~~~~~~~~~~~~t~vt~~l~~~~~~gT~ltl~~~~--~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l~~ 149 (149)
T cd08891 79 WQINADWRPDPDKASEVEVRFEAVGAEGTRVELEHRG--FERHGDGWEAAAMRMGYDGGWPLLLERYAAAAEK 149 (149)
T ss_pred eccCCCcCcCCCCceEEEEEEEECCCCCeEEEEEEec--ccccCcchhhHHHHhcccCcHHHHHHHHHHHhcC
Confidence 64 2111 11 1346788888865356544442222 211 111112223333444467788889888875
No 29
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.69 E-value=7.1e-07 Score=64.02 Aligned_cols=129 Identities=12% Similarity=0.025 Sum_probs=73.8
Q ss_pred eecCChHHHHHHHhcCCCCCccCC-c---eeEEEEEcCCCCCeEEEEEee--cCCCCceEEEEEEEEeCCCCEEEEEEe-
Q 031801 2 IVGILDNQVWSLVRRFDQPQKYKP-F---VSRCIVQGDLQIGSVREVNVK--SGLPATTSTERLELLDDEEHIFGMRIV- 74 (153)
Q Consensus 2 vI~ap~~~VW~~v~df~~~~~w~p-~---v~~~~~~G~~~vG~~R~~~~~--~G~~~~~~~E~l~~~D~~~~~~~y~i~- 74 (153)
+|+||+++||+++.+...+.+|++ . +..++++ ..+|..-++.+. +|. .....-++.++|+. +++.|+-.
T Consensus 7 ~i~a~~e~Vw~a~t~pe~~~~W~~p~~~~~~~~~~d--~~~GG~~~~~~~~~~g~-~~~~~g~v~~i~p~-~~l~~t~~~ 82 (146)
T cd08896 7 TIDAPRELVWRAWTEPELLKQWFCPKPWTTEVAELD--LRPGGAFRTVMRGPDGE-EFPNPGCFLEVVPG-ERLVFTDAL 82 (146)
T ss_pred EeCCCHHHHHHHcCCHHHHhccCCCCCccceEEEEE--eecCcEEEEEEECCCCC-EecceEEEEEEeCC-CEEEEEEee
Confidence 589999999999999999999984 1 2333332 223343233332 331 12346679999985 77888742
Q ss_pred -cCCCCc-ee-eEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 031801 75 -GGDHRL-KN-YSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSE 139 (153)
Q Consensus 75 -~g~~p~-~~-y~ati~v~p~~~~g~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~e 139 (153)
++..|. .. ...+++|++.+ +|+.+++. ..+.. ...........+..=....|+.|++.+|
T Consensus 83 ~~~~~~~~~~~~~v~~~~~~~~-~gT~Ltl~---~~~~~-~~~~~~~~~~~~~~GW~~~l~~L~~~l~ 145 (146)
T cd08896 83 TPGWRPAEKPFMTAIITFEDEG-GGTRYTAR---ARHWT-EADRKQHEEMGFHDGWGTAADQLAALAE 145 (146)
T ss_pred cCCcCCCCCCcEEEEEEEEecC-CcEEEEEE---EEeCC-HHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 221121 11 45688899876 66644432 12211 1101111122234557888899988876
No 30
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.69 E-value=4.7e-07 Score=63.99 Aligned_cols=122 Identities=14% Similarity=0.131 Sum_probs=75.0
Q ss_pred eecCChHHHHHHHhcCCCCCccCCceeE---EEEEcCCCCCeEEEEEee--cCCCCceEEEEEEEEeCCCCEEEEEEecC
Q 031801 2 IVGILDNQVWSLVRRFDQPQKYKPFVSR---CIVQGDLQIGSVREVNVK--SGLPATTSTERLELLDDEEHIFGMRIVGG 76 (153)
Q Consensus 2 vI~ap~~~VW~~v~df~~~~~w~p~v~~---~~~~G~~~vG~~R~~~~~--~G~~~~~~~E~l~~~D~~~~~~~y~i~~g 76 (153)
.|+||+++||+.++|...+..|++.... ...+.+-.+|..-.+.+. +|.....+.-++.++++. +++.|+..++
T Consensus 7 ~~~ap~e~Vw~a~td~e~~~~W~~~~~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~~g~~~ei~p~-~~l~~~~~~~ 85 (133)
T cd08897 7 TVDAPIEKVWEAWTTPEHITKWNFASDDWHCPSAENDLRVGGKFSYRMEAKDGSMGFDFEGTYTEVEPH-KLIEYTMEDG 85 (133)
T ss_pred EeCCCHHHHHHHhCCHHHHhhCCCCCCCcccceeeecCCcCCEEEEEEEcCCCCcccccceEEEEECCC-CEEEEEcCCC
Confidence 6899999999999999999999643211 112233345554334332 332112356678889984 8899997432
Q ss_pred CCCceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031801 77 DHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEH 140 (153)
Q Consensus 77 ~~p~~~y~ati~v~p~~~~g~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~e~ 140 (153)
...+++|+|.+ +||.++. + +...+.. ..+.+..=...+|+.|++.+|+
T Consensus 86 ------~~v~~~l~~~~-~gT~l~l---~--~~~~~~~----~~~~~~~GW~~~l~~L~~~le~ 133 (133)
T cd08897 86 ------REVEVEFTEEG-DGTKVVE---T--FDAENEN----PVEMQRQGWQAILDNFKKYVES 133 (133)
T ss_pred ------CEEEEEEEECC-CCEEEEE---E--ECCCCCC----cHHHHHHHHHHHHHHHHHHhhC
Confidence 35788999876 6664333 2 3221111 1223334468889999998874
No 31
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.68 E-value=1.4e-06 Score=62.27 Aligned_cols=128 Identities=16% Similarity=0.045 Sum_probs=74.9
Q ss_pred eecCChHHHHHHHhcCCCCCccCCc-----eeEEEEEcCCCCCeEEEEEee--cCCCCceEEEEEEEEeCCCCEEEEEEe
Q 031801 2 IVGILDNQVWSLVRRFDQPQKYKPF-----VSRCIVQGDLQIGSVREVNVK--SGLPATTSTERLELLDDEEHIFGMRIV 74 (153)
Q Consensus 2 vI~ap~~~VW~~v~df~~~~~w~p~-----v~~~~~~G~~~vG~~R~~~~~--~G~~~~~~~E~l~~~D~~~~~~~y~i~ 74 (153)
.++||+++||+.+.|...+.+|+.. +..++++ ..+|..-.+.+. +|. .....=++.++++. +++.|+..
T Consensus 7 ~~~ap~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~d--~~~Gg~~~~~~~~~~g~-~~~~~g~~~~~~p~-~~l~~t~~ 82 (143)
T cd08900 7 TYPAPPERVFAAWSDPAARARWFVPSPDWTVLEDEFD--FRVGGREVSRGGPKGGP-EITVEARYHDIVPD-ERIVYTYT 82 (143)
T ss_pred EeCCCHHHHHHHhcCHHHHHhcCCCCCCCceeeeEEe--cCCCCEEEEEEECCCCC-EEeeeEEEEEecCC-ceEEEEEe
Confidence 4899999999999999999999842 2333332 334444233332 331 13445688889985 77877753
Q ss_pred c--CCCCceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031801 75 G--GDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEH 140 (153)
Q Consensus 75 ~--g~~p~~~y~ati~v~p~~~~g~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~e~ 140 (153)
. ++.+......++.|.+.+ +||.+++......+ +.. +. ...+..=....|+.|++.|++
T Consensus 83 ~~~~~~~~~~s~v~~~l~~~~-~gT~l~~~~~~~~~--~~~---~~-~~~~~~GW~~~l~~L~~~l~~ 143 (143)
T cd08900 83 MHIGGTLLSASLATVEFAPEG-GGTRLTLTEQGAFL--DGD---DD-PAGREQGTAALLDNLAAELER 143 (143)
T ss_pred eccCCccccceEEEEEEEECC-CCEEEEEEEEEecc--ccc---ch-hhhHHHHHHHHHHHHHHHHhC
Confidence 2 222333455788888876 66644332221111 111 11 223334477788999988874
No 32
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.65 E-value=1.6e-06 Score=62.06 Aligned_cols=131 Identities=7% Similarity=-0.109 Sum_probs=77.0
Q ss_pred eecCChHHHHHHHhcCCCCCccCCce-eEE-EEEcCCCCCeEEEEEee--cCCCCceEEEEEEEEeCCCCEEEEEEecCC
Q 031801 2 IVGILDNQVWSLVRRFDQPQKYKPFV-SRC-IVQGDLQIGSVREVNVK--SGLPATTSTERLELLDDEEHIFGMRIVGGD 77 (153)
Q Consensus 2 vI~ap~~~VW~~v~df~~~~~w~p~v-~~~-~~~G~~~vG~~R~~~~~--~G~~~~~~~E~l~~~D~~~~~~~y~i~~g~ 77 (153)
+++||+++||+.++|...+..|...- -.+ ..+.+..+|..-.+.+. +| ....+.-++.++++. +++.|+-.-.+
T Consensus 7 ~~~ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~g-~~~~~~g~~~ei~p~-~~l~~t~~~~~ 84 (142)
T cd07826 7 EFDAPRELVFRAHTDPELVKRWWGPRGLTMTVCECDIRVGGSYRYVHRAPDG-EEMGFHGVYHEVTPP-ERIVQTEEFEG 84 (142)
T ss_pred EECCCHHHHHHHhCCHHHHhhccCCCCCcceEEEEeccCCCEEEEEEECCCC-CEecceEEEEEEcCC-CEEEEEeEecC
Confidence 48999999999999999999998421 111 12333445554344443 33 123456678889984 67777653222
Q ss_pred CCceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 031801 78 HRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSE 139 (153)
Q Consensus 78 ~p~~~y~ati~v~p~~~~g~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~e 139 (153)
.+-.....+++|.+.+ +|+.+++ ...+.. ...........+..=....|+.|++.|+
T Consensus 85 ~~~~~s~v~~~l~~~~-~gT~l~l---~~~~~~-~~~~~~~~~~~~~~Gw~~~l~~L~~~l~ 141 (142)
T cd07826 85 LPDGVALETVTFTELG-GRTRLTA---TSRYPS-KEARDGVLASGMEEGMEESYDRLDELLA 141 (142)
T ss_pred CCCCceEEEEEEEECC-CCEEEEE---EEEeCC-HHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 2333456788888876 6664433 233321 1111123344555557778888887765
No 33
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=98.56 E-value=2.3e-06 Score=61.83 Aligned_cols=101 Identities=20% Similarity=0.193 Sum_probs=67.0
Q ss_pred eecCChHHHHHHHhcCCCCCccCCceeEEEEEcCCCCCeEEEEEeecCCCCce--EEEEEEEEeCCCCEEEEEEecCC-C
Q 031801 2 IVGILDNQVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATT--STERLELLDDEEHIFGMRIVGGD-H 78 (153)
Q Consensus 2 vI~ap~~~VW~~v~df~~~~~w~p~v~~~~~~G~~~vG~~R~~~~~~G~~~~~--~~E~l~~~D~~~~~~~y~i~~g~-~ 78 (153)
.|++|+++||+.|.|+..+..=+|.+++.+.+|+. ..-.+.+.-|.-... .+=++..+|+..++++-+--+|. .
T Consensus 8 ~V~~p~e~Vw~~L~dpe~~a~ciPG~qs~e~~g~e---~~~~v~l~ig~l~~~~~g~~~~~~v~~~~~~~~i~g~G~~~~ 84 (146)
T COG3427 8 RVAAPPEAVWEFLNDPEQVAACIPGVQSVETNGDE---YTAKVKLKIGPLKGTFSGRVRFVNVDEPPRSITINGSGGGAA 84 (146)
T ss_pred EecCCHHHHHHHhcCHHHHHhhcCCcceeeecCCe---EEEEEEEeecceeEEEEEEEEEccccCCCcEEEEEeeccccc
Confidence 48999999999999999998899999999987651 111222222210012 23355665677777777666633 3
Q ss_pred CceeeEEEEEEEeecCCCcceEEEEEEEEee
Q 031801 79 RLKNYSSIVTVHPEVIDGRPGTLVIESFVVD 109 (153)
Q Consensus 79 p~~~y~ati~v~p~~~~g~~~t~~~~~~~~~ 109 (153)
.+-+.++.+.|+|.+ +|+ .+.|....+
T Consensus 85 g~~~~~~~v~l~~~g-~gt---~v~w~~~~~ 111 (146)
T COG3427 85 GFADGTVDVQLEPSG-EGT---RVNWFADAN 111 (146)
T ss_pred ceeeeeeEEEEEEcC-CCc---EEEEEEEcc
Confidence 567888889999987 454 555665544
No 34
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=98.54 E-value=7e-06 Score=56.48 Aligned_cols=122 Identities=12% Similarity=-0.017 Sum_probs=73.3
Q ss_pred cCChHHHHHHHhcCCCCCccCCceeEEEEEcCCCCCeEEEEEeecCCCCceEEEEEEEEeCCCCEEEEEEecCCCC-cee
Q 031801 4 GILDNQVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHR-LKN 82 (153)
Q Consensus 4 ~ap~~~VW~~v~df~~~~~w~p~v~~~~~~G~~~vG~~R~~~~~~G~~~~~~~E~l~~~D~~~~~~~y~i~~g~~p-~~~ 82 (153)
+||+++||+++.+...+..|.+ ....+++ ..+|..-++.-.+|. .....=++.++++. +++.|+...++.+ -..
T Consensus 1 ~ap~e~Vw~a~t~~~~~~~W~~-~~~~~~~--~~~Gg~~~~~~~~g~-~~~~~~~v~~~~p~-~~i~~~~~~~~~~~~~~ 75 (124)
T PF08327_consen 1 DAPPERVWEALTDPEGLAQWFT-TSEAEMD--FRPGGSFRFMDPDGG-EFGFDGTVLEVEPP-ERIVFTWRMPDDPDGPE 75 (124)
T ss_dssp SSSHHHHHHHHHSHHHHHHHSE-EEEEEEE--CSTTEEEEEEETTSE-EEEEEEEEEEEETT-TEEEEEEEEETSSSCEE
T ss_pred CcCHHHHHHHHCCHhHHhhccC-CCcceee--eecCCEEEEEecCCC-CceeeEEEEEEeCC-EEEEEEEEccCCCCCCc
Confidence 6999999999999999999921 2222333 234554333113341 12344468899985 7798886443322 446
Q ss_pred eEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHh
Q 031801 83 YSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYF-VEALIKCNLKSLADVSE 139 (153)
Q Consensus 83 y~ati~v~p~~~~g~~~t~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~L~~~~e 139 (153)
...++.|++.+ +++.+++.. ..+.. ....+. +..-....|+.|++.||
T Consensus 76 ~~v~~~~~~~~-~~T~l~~~~--~~~~~------~~~~~~~~~~gw~~~l~~L~~~lE 124 (124)
T PF08327_consen 76 SRVTFEFEEEG-GGTRLTLTH--SGFPD------DDEEEEGMEQGWEQMLDRLKAYLE 124 (124)
T ss_dssp EEEEEEEEEET-TEEEEEEEE--EEEHS------HHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEEcC-CcEEEEEEE--EcCCc------cHHHHHHHHHHHHHHHHHHHHHhC
Confidence 77888999843 565333322 22211 112222 55668888899998886
No 35
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.53 E-value=1e-05 Score=57.93 Aligned_cols=127 Identities=17% Similarity=0.054 Sum_probs=73.0
Q ss_pred eecCChHHHHHHHhcCCCCCccCCc--eeEEEEEcCCCCCeEEEE--EeecC------CCCceEEEEEEEEeCCCCEEEE
Q 031801 2 IVGILDNQVWSLVRRFDQPQKYKPF--VSRCIVQGDLQIGSVREV--NVKSG------LPATTSTERLELLDDEEHIFGM 71 (153)
Q Consensus 2 vI~ap~~~VW~~v~df~~~~~w~p~--v~~~~~~G~~~vG~~R~~--~~~~G------~~~~~~~E~l~~~D~~~~~~~y 71 (153)
.|+||+++||+++.|...+.+|.+- ......+.+..+|..-.+ ++.++ +......=++.++++. +++.|
T Consensus 7 ~i~ap~e~Vw~a~td~~~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~v~~v~p~-~~i~~ 85 (146)
T cd08895 7 VIAAPPERVYRAFLDPDALAKWLPPDGMTGTVHEFDAREGGGFRMSLTYFDPSVGKTTGNTDVFGGRFLELVPN-ERIVY 85 (146)
T ss_pred EECCCHHHHHHHHcCHHHHhhcCCCCCeEeEEEEEecccCCeEEEEEEcCCccccccCCcEeeeEEEEEEEcCC-CEEEE
Confidence 4899999999999999999999852 211111222233443223 22230 1112445578899985 67888
Q ss_pred EEe--cCCCCceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 031801 72 RIV--GGDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSE 139 (153)
Q Consensus 72 ~i~--~g~~p~~~y~ati~v~p~~~~g~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~e 139 (153)
+.. ++..| .....++.+.+.+ +++ .+..+... .+.+ ........=....|+.|++.+|
T Consensus 86 ~~~~~~~~~~-~~~~v~~~~~~~~-~~T---~lt~~~~~-~~~~----~~~~~~~~GW~~~l~~L~~~le 145 (146)
T cd08895 86 TDVFDDPSLS-GEMTMTWTLSPVS-GGT---DVTIVQSG-IPDG----IPPEDCELGWQESLANLAALVE 145 (146)
T ss_pred EEEecCCCCC-ceEEEEEEEEecC-CCE---EEEEEEeC-CCch----hhhhHHHHHHHHHHHHHHHHhc
Confidence 753 22233 2456888888876 554 33333322 2221 1123344446777888888876
No 36
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.51 E-value=1.8e-05 Score=59.19 Aligned_cols=134 Identities=12% Similarity=-0.001 Sum_probs=74.9
Q ss_pred eecCChHHHHHHHhcCCCCCccCCceeEEEE-EcCCCCCeEEEEEeecCCCC---ceEEEEEEEEeCCCCEEEEEEecCC
Q 031801 2 IVGILDNQVWSLVRRFDQPQKYKPFVSRCIV-QGDLQIGSVREVNVKSGLPA---TTSTERLELLDDEEHIFGMRIVGGD 77 (153)
Q Consensus 2 vI~ap~~~VW~~v~df~~~~~w~p~v~~~~~-~G~~~vG~~R~~~~~~G~~~---~~~~E~l~~~D~~~~~~~y~i~~g~ 77 (153)
+|++||++||+++.|.+.+++|.|.+..+++ +-.+.--.+-+..+..+.|. ..+..+-...+.++..+...+.+.+
T Consensus 48 ~i~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~~~~i~~~s~~ 127 (195)
T cd08876 48 EVDASIEAFLALLRDTESYPQWMPNCKESRVLKRTDDNERSVYTVIDLPWPVKDRDMVLRSTTEQDADDGSVTITLEAAP 127 (195)
T ss_pred EEeCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCCCcEEEEEEEecccccCCceEEEEEEEEEcCCCCEEEEEeecCC
Confidence 5899999999999999999999999999985 42111012223333322111 1222211122221234444443332
Q ss_pred C--C-------ceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 031801 78 H--R-------LKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVS 138 (153)
Q Consensus 78 ~--p-------~~~y~ati~v~p~~~~g~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~ 138 (153)
. | +..+.+.+.++|.++++ |.+.+...+++........+...+.......|++|++++
T Consensus 128 ~~~P~~~~~vR~~~~~~~~~i~~~~~~~---t~vt~~~~~dp~g~iP~~lv~~~~~~~~~~~l~~l~~~~ 194 (195)
T cd08876 128 EALPEQKGYVRIKTVEGQWTFTPLGNGK---TRVTYQAYADPGGSIPGWLANAFAKDAPYNTLENLRKQL 194 (195)
T ss_pred ccCCCCCCeEEceeceeeEEEEECCCCe---EEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1 3 46777888999987444 444444455653333334455556666666777776654
No 37
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.49 E-value=2e-06 Score=61.04 Aligned_cols=126 Identities=11% Similarity=-0.073 Sum_probs=74.6
Q ss_pred CeecCChHHHHHHHhcCCCCCccCCceeEEEEEcCCCCCeEEEEEeecCCCCceEEEEEEEEeCCCCEEEEEEecCCCCc
Q 031801 1 MIVGILDNQVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRL 80 (153)
Q Consensus 1 ~vI~ap~~~VW~~v~df~~~~~w~p~v~~~~~~G~~~vG~~R~~~~~~G~~~~~~~E~l~~~D~~~~~~~y~i~~g~~p~ 80 (153)
++|+||+++||+.+++...+.+|.+.-...+++ +|..-.+.+.... ..+.=++.++++. +++.|+...+. +
T Consensus 6 ~~i~ap~e~Vw~a~t~p~~l~~W~~~~~~~~~~----~Gg~~~~~~~~~~--~~~~g~~~~~~p~-~~l~~~w~~~~-~- 76 (136)
T cd08901 6 MLIRRPVAEVFEAFVDPEITTKFWFTGSSGRLE----EGKTVTWDWEMYG--ASVPVNVLEIEPN-KRIVIEWGDPG-E- 76 (136)
T ss_pred EEecCCHHHHHHHhcCHHHhccccccCCCcccc----CCCEEEEEEEccC--CceEEEEEEEcCC-CEEEEEecCCC-C-
Confidence 469999999999999999999986432233332 3433234444221 1345578889885 78989875431 2
Q ss_pred eeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHH--HHHHHHHHHHHHHHHHHHHhhh
Q 031801 81 KNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDET--CYFVEALIKCNLKSLADVSEHL 141 (153)
Q Consensus 81 ~~y~ati~v~p~~~~g~~~t~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~L~~~~e~~ 141 (153)
....+++|.+.+++|+.+++. ++ -+ +.. ..+.. ...+..-....|+.|++.+|+.
T Consensus 77 -~s~v~~~l~~~~~ggT~ltl~-~~-~~--~~~-~~~~~~~~~~~~~GW~~~L~~L~~~le~g 133 (136)
T cd08901 77 -PTTVEWTFEELDDGRTFVTIT-ES-GF--PGT-DDEGLKQALGSTEGWTLVLAGLKAYLEHG 133 (136)
T ss_pred -CEEEEEEEEECCCCcEEEEEE-EC-CC--CCC-cHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 245678888875355533332 11 12 222 11111 1122344777899999999874
No 38
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=98.48 E-value=2.9e-06 Score=61.01 Aligned_cols=132 Identities=17% Similarity=0.224 Sum_probs=91.2
Q ss_pred eecCChHHHHHHHhcCCCCCccCCceeEEEE-EcCCCCCeEEEEEee-cCCCCceEEEEEEEEeCCCCEEEEEEecCCCC
Q 031801 2 IVGILDNQVWSLVRRFDQPQKYKPFVSRCIV-QGDLQIGSVREVNVK-SGLPATTSTERLELLDDEEHIFGMRIVGGDHR 79 (153)
Q Consensus 2 vI~ap~~~VW~~v~df~~~~~w~p~v~~~~~-~G~~~vG~~R~~~~~-~G~~~~~~~E~l~~~D~~~~~~~y~i~~g~~p 79 (153)
.|+.+|++++++|.|...+|.+.|++..+.+ +.. ....+-.++.+ .|. ..++.-|.. .++..+.+.-.+++| |
T Consensus 9 lv~y~a~~mF~LV~dV~~YP~FlP~C~~s~v~~~~-~~~l~A~l~V~~k~i-~e~F~Trv~-~~~~~~~I~~~l~~G--P 83 (146)
T COG2867 9 LVPYSASQMFDLVNDVESYPEFLPWCSASRVLERN-ERELIAELDVGFKGI-RETFTTRVT-LKPTARSIDMKLIDG--P 83 (146)
T ss_pred eccCCHHHHHHHHHHHHhCchhccccccceEeccC-cceeEEEEEEEhhhe-eeeeeeeee-ecCchhhhhhhhhcC--C
Confidence 4788999999999999999999999988876 432 22333334333 221 123333444 344456777778887 7
Q ss_pred ceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 031801 80 LKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEHLAVQD 145 (153)
Q Consensus 80 ~~~y~ati~v~p~~~~g~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~e~~~~~~ 145 (153)
++...+++++.|.++++|.+.+.+.+ .| ....+..++..+++..-..|-+++++.|.+-
T Consensus 84 Fk~L~~~W~F~pl~~~~ckV~f~ldf-eF------~s~ll~~~~g~~f~~~a~~mv~aF~kRA~~~ 142 (146)
T COG2867 84 FKYLKGGWQFTPLSEDACKVEFFLDF-EF------KSRLLGALIGPVFKRLASKMVEAFEKRAKEV 142 (146)
T ss_pred hhhhcCceEEEECCCCceEEEEEEEe-ee------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78889999999977577765554442 23 1234667788888888899999999888763
No 39
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=98.35 E-value=1.3e-05 Score=56.28 Aligned_cols=117 Identities=12% Similarity=0.067 Sum_probs=69.7
Q ss_pred eecCChHHHHHHHhcCCCCCccCCceeEEEEEcCCCCC-eEEEEEeecCCCCceEEEEEEEEeCCCCEEEEEEecCCCCc
Q 031801 2 IVGILDNQVWSLVRRFDQPQKYKPFVSRCIVQGDLQIG-SVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRL 80 (153)
Q Consensus 2 vI~ap~~~VW~~v~df~~~~~w~p~v~~~~~~G~~~vG-~~R~~~~~~G~~~~~~~E~l~~~D~~~~~~~y~i~~g~~p~ 80 (153)
.|+||+++||+.+.+...+..|.....+.+. .+| ..+ +.+| .+.-++.++++. +++.|+-.-.+.|.
T Consensus 7 ~i~ap~e~Vw~A~T~~e~l~~W~~~~~~~d~----~~GG~~~---~~~g----~~~g~~~~i~p~-~~l~~~w~~~~~~~ 74 (126)
T cd08892 7 TFQVPAEELYEALTDEERVQAFTRSPAKVDA----KVGGKFS---LFGG----NITGEFVELVPG-KKIVQKWRFKSWPE 74 (126)
T ss_pred EECCCHHHHHHHHCCHHHHHhhcCCCceecC----CCCCEEE---EeCC----ceEEEEEEEcCC-CEEEEEEEcCCCCC
Confidence 5899999999999999999999853333332 233 333 2344 345578888874 67777654322232
Q ss_pred -eeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 031801 81 -KNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSE 139 (153)
Q Consensus 81 -~~y~ati~v~p~~~~g~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~e 139 (153)
..-..++.|++.+ +|+.+++ .... .+.+ ....+-.++-...++.|++.++
T Consensus 75 ~~~s~v~~~l~~~~-~gT~ltl---~~~g-~~~~----~~~~~~~GW~~~~~~~l~~~~~ 125 (126)
T cd08892 75 GHYSTVTLTFTEKD-DETELKL---TQTG-VPAG----EEERTREGWERYYFESIKQTFG 125 (126)
T ss_pred CCcEEEEEEEEECC-CCEEEEE---EEEC-CCCc----hHHHHHhhHHHHHHHHHHHHhC
Confidence 2356788888874 6654333 2221 1222 1223344555567788888775
No 40
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=98.33 E-value=1.2e-05 Score=57.59 Aligned_cols=127 Identities=22% Similarity=0.215 Sum_probs=69.3
Q ss_pred eecCChHHHHHHHhcCCCCCccCCceeEEEEEcCCCCCeEE-EEEeecCCCC---ceEEEEEEEEeCCCCEEEEEEecCC
Q 031801 2 IVGILDNQVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVR-EVNVKSGLPA---TTSTERLELLDDEEHIFGMRIVGGD 77 (153)
Q Consensus 2 vI~ap~~~VW~~v~df~~~~~w~p~v~~~~~~G~~~vG~~R-~~~~~~G~~~---~~~~E~l~~~D~~~~~~~y~i~~g~ 77 (153)
.|++|+++||+++.|+.++..=.|.+++.+..|+ ..+ .++.+-| |. -..+=++.++|+.++ +..++....
T Consensus 4 ~v~a~~~~vw~~l~D~~~l~~ciPG~~~~e~~~~----~~~~~~~v~vG-~i~~~~~g~~~~~~~~~~~~-~~~~~~g~g 77 (140)
T PF06240_consen 4 EVPAPPEKVWAFLSDPENLARCIPGVESIEKVGD----EYKGKVKVKVG-PIKGTFDGEVRITEIDPPES-YTLEFEGRG 77 (140)
T ss_dssp EECS-HHHHHHHHT-HHHHHHHSTTEEEEEEECT----EEEEEEEEESC-CCEEEEEEEEEEEEEETTTE-EEEEEEEEE
T ss_pred EecCCHHHHHHHhcCHHHHHhhCCCcEEeeecCc----EEEEEEEEEec-cEEEEEEEEEEEEEcCCCcc-eEeeeeccC
Confidence 5899999999999999999888899999886542 111 1222222 11 123345667777644 335554432
Q ss_pred C-CceeeEEEEEEEeecCCCcceEEEEEEEEeeCC---CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 031801 78 H-RLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVP---DGNTKDETCYFVEALIKCNLKSLADV 137 (153)
Q Consensus 78 ~-p~~~y~ati~v~p~~~~g~~~t~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~L~~~ 137 (153)
. .-.+..+.+++...++++ |.+.|+..++.. ..+-...+....+.+++...++|++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~---T~v~~~~~~~~~G~la~~g~~~i~~~~~~l~~~f~~~l~~~ 138 (140)
T PF06240_consen 78 RGGGSSASANITLSLEDDGG---TRVTWSADVEVGGPLASLGQRLIESVARRLIEQFFENLERK 138 (140)
T ss_dssp CTCCEEEEEEEEEEECCCTC---EEEEEEEEEEEECHHHHC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccceEEEEEEEEEcCCCCC---cEEEEEEEEEEccCHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 233555666666554233 566666665431 11112334455555555555555544
No 41
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=98.30 E-value=1.9e-05 Score=58.77 Aligned_cols=131 Identities=15% Similarity=0.077 Sum_probs=83.5
Q ss_pred CeecCChHHHHHHHhcCCCCCccCCceeEEEEEcCCCCCeEEEEEeec--CCCCceEEEEEEEEeCCCCEEEEEEecCC-
Q 031801 1 MIVGILDNQVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKS--GLPATTSTERLELLDDEEHIFGMRIVGGD- 77 (153)
Q Consensus 1 ~vI~ap~~~VW~~v~df~~~~~w~p~v~~~~~~G~~~vG~~R~~~~~~--G~~~~~~~E~l~~~D~~~~~~~y~i~~g~- 77 (153)
|+|++|+++||.+.+|+.++|.|+-.++|+++--|.. . +++.+. |..+. ..-+|++. ..+..+.|+-++|.
T Consensus 76 V~I~kPae~vy~~W~dLe~lP~~Mkhl~SVkVlddkr---S-rW~~~ap~g~~v~-Wea~it~d-~~~e~I~W~Sl~Ga~ 149 (217)
T COG5637 76 VTIDKPAEQVYAYWRDLENLPLWMKHLDSVKVLDDKR---S-RWKANAPLGLEVE-WEAEITKD-IPGERIQWESLPGAR 149 (217)
T ss_pred EEeCChHHHHHHHHHhhhhhhHHHHhhceeeccCCCc---c-ceeEcCCCCceEE-Eeehhhcc-CCCcEEeeecCCCCc
Confidence 5799999999999999999999999999998732321 2 354442 32222 23355544 44688999998873
Q ss_pred CCceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHH----HHHHHHHHHHHHHHHHHHhhhhh
Q 031801 78 HRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETC----YFVEALIKCNLKSLADVSEHLAV 143 (153)
Q Consensus 78 ~p~~~y~ati~v~p~~~~g~~~t~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~L~~~~e~~~~ 143 (153)
++= .+.+++.+..++. |.+.-+..+.+|.+....... +..+..++.-|+..|...|....
T Consensus 150 v~N---sG~VrF~~~pg~~---t~V~v~lsY~~Pgg~~~a~va~~fgeepeqqI~~DL~RFk~~~e~~q~ 213 (217)
T COG5637 150 VEN---SGAVRFYDAPGDS---TEVKVTLSYRPPGGLLGAVVAKLFGEEPEQQIQDDLERFKEYQENGQP 213 (217)
T ss_pred CCC---CccEEeeeCCCCc---eEEEEEEEecCCccHHHHHHHHHhccchHHHHHHHHHHHHHHHHccCc
Confidence 332 3447888876333 333334455666554332222 33456677788888888877443
No 42
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=3.3e-05 Score=56.00 Aligned_cols=92 Identities=9% Similarity=0.011 Sum_probs=57.8
Q ss_pred eecCChHHHHHHHhcCCCCCccCCceeEEEEEcCCCCCeEEEEEeecCCCCceEEEEEEEEeCCCCEEEEEEecC--CCC
Q 031801 2 IVGILDNQVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGG--DHR 79 (153)
Q Consensus 2 vI~ap~~~VW~~v~df~~~~~w~p~v~~~~~~G~~~vG~~R~~~~~~G~~~~~~~E~l~~~D~~~~~~~y~i~~g--~~p 79 (153)
+|+||+++||+.++|...+.+|+. -..|+.+.--+.+....+...+| +...+.-++.++++. +++.|+-.-. ..|
T Consensus 15 ~i~aP~e~Vf~A~Tdpe~l~~W~~-~~~~~~d~r~gg~~~~~~~~~~g-~~~~~~~~~~~v~p~-~rIv~tw~~~~~~~~ 91 (149)
T COG3832 15 LIDAPPEKVFEALTDPELLARWFM-PGGAEFDARTGGGERVRFRGPDG-PVHSFEGEYLEVVPP-ERIVFTWDFDEDGEP 91 (149)
T ss_pred eecCCHHHHHHHhcCHHHHHhhcC-CCCCccceecCCceEEeeecCCC-CeeecceEEEEEcCC-cEEEEEeccCCCCCc
Confidence 589999999999999999999987 32233221101122223333343 224567788889885 7677766443 334
Q ss_pred ceeeEEEEEEEeecCCC
Q 031801 80 LKNYSSIVTVHPEVIDG 96 (153)
Q Consensus 80 ~~~y~ati~v~p~~~~g 96 (153)
...-..+++|.+..++|
T Consensus 92 ~~~~~v~~~l~~~~~g~ 108 (149)
T COG3832 92 FLKSLVTITLTPEDDGG 108 (149)
T ss_pred ccCceEEEEEEEecCCC
Confidence 44667788888866343
No 43
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=97.80 E-value=0.00041 Score=49.19 Aligned_cols=87 Identities=8% Similarity=-0.006 Sum_probs=52.9
Q ss_pred ecCChHHHHHHHhcCCCCCccC-CceeEEEEEcCCCCCe-EEEEEeecCCCCceEEEEEEEEeCCCCEEEEEEecCC-CC
Q 031801 3 VGILDNQVWSLVRRFDQPQKYK-PFVSRCIVQGDLQIGS-VREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGD-HR 79 (153)
Q Consensus 3 I~ap~~~VW~~v~df~~~~~w~-p~v~~~~~~G~~~vG~-~R~~~~~~G~~~~~~~E~l~~~D~~~~~~~y~i~~g~-~p 79 (153)
++||+++||..+.|...+..|. + ..++++ ..+|. .+.+ .| .+.-+.+++|+. +++.|+.--.+ .+
T Consensus 1 f~ap~e~Vw~A~Tdp~~l~~w~~~--~~~~~d--~~~GG~f~~~---~~----~~~G~~~ev~pp-~rlv~tw~~~~~~~ 68 (132)
T PTZ00220 1 FYVPPEVLYNAFLDAYTLTRLSLG--SPAEMD--AKVGGKFSLF---NG----SVEGEFTELEKP-KKIVQKWRFRDWEE 68 (132)
T ss_pred CCCCHHHHHHHHcCHHHHHHHhcC--CCcccc--CCcCCEEEEe---cC----ceEEEEEEEcCC-CEEEEEEecCCCCC
Confidence 5799999999999998888884 3 223332 23344 3332 33 355678888885 66776653222 12
Q ss_pred ceeeEEEEEEEeecCCCcceEE
Q 031801 80 LKNYSSIVTVHPEVIDGRPGTL 101 (153)
Q Consensus 80 ~~~y~ati~v~p~~~~g~~~t~ 101 (153)
-.....++.+++.+++++.+++
T Consensus 69 ~~~s~vt~~~~~~~~g~T~lt~ 90 (132)
T PTZ00220 69 DVYSKVTIEFRAVEEDHTELKL 90 (132)
T ss_pred CCceEEEEEEEeCCCCcEEEEE
Confidence 1124578888886534554444
No 44
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=97.51 E-value=0.0064 Score=44.29 Aligned_cols=60 Identities=25% Similarity=0.390 Sum_probs=38.7
Q ss_pred ChHHHHHHHh-cCCCCCccCCceeEEEEEcCCCCCeEEEEEeecCCCCceEEEEEEEEeCCCCEEEE
Q 031801 6 LDNQVWSLVR-RFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGM 71 (153)
Q Consensus 6 p~~~VW~~v~-df~~~~~w~p~v~~~~~~G~~~vG~~R~~~~~~G~~~~~~~E~l~~~D~~~~~~~y 71 (153)
..++||.-|- .-.+...|.|.|.+|++-.+....-.|.++|+ + ..++|++....+ +.+.|
T Consensus 19 Tr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~~~~~R~v~fg-~---~~v~E~v~~~~~--~~V~f 79 (149)
T PF08982_consen 19 TREQLWRGLVLKARNPQLFVPGIDSCEVLSESDTVLTREVTFG-G---ATVRERVTLYPP--ERVDF 79 (149)
T ss_dssp -HHHHHHHHHHHHH-GGGT-TT--EEEEEEE-SSEEEEEEEET-T---EEEEEEEEEETT--TEEEE
T ss_pred CHHHHHHHHHHHHhChhhCccccCeEEEEecCCCeEEEEEEEC-C---cEEEEEEEEeCC--cEEEE
Confidence 4689997655 44456789999999996211234668999994 3 589999886654 57777
No 45
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=97.27 E-value=0.019 Score=43.79 Aligned_cols=136 Identities=17% Similarity=0.136 Sum_probs=78.3
Q ss_pred eecCChHHHH-HHHhcCCCCCccCCceeEEEE-E--cCCCCCeEEEEEee-cCC---CCceEEEEEEEEeCCCCEE-EEE
Q 031801 2 IVGILDNQVW-SLVRRFDQPQKYKPFVSRCIV-Q--GDLQIGSVREVNVK-SGL---PATTSTERLELLDDEEHIF-GMR 72 (153)
Q Consensus 2 vI~ap~~~VW-~~v~df~~~~~w~p~v~~~~~-~--G~~~vG~~R~~~~~-~G~---~~~~~~E~l~~~D~~~~~~-~y~ 72 (153)
+|++|+++++ .++-|..+.++|.+.+.++++ + ++. .=.++.+... .+. +...+.-+....++.+..+ ..+
T Consensus 56 ~i~~~~~~l~~~l~~d~e~~~~W~~~~~~~~vl~~id~~-~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~~~~~~~~s 134 (209)
T cd08905 56 VVDQPLDNLYSELVDRMEQMGEWNPNVKEVKILQRIGKD-TLITHEVAAETAGNVVGPRDFVSVRCAKRRGSTCVLAGMA 134 (209)
T ss_pred EecCCHHHHHHHHHhchhhhceecccchHHHHHhhcCCC-ceEEEEEeccCCCCccCccceEEEEEEEEcCCcEEEEEEe
Confidence 5899999999 888899999999999999874 3 221 1112222211 111 1122332333333333322 222
Q ss_pred EecCCCC-------ceeeEEEEEEEeecC-CCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031801 73 IVGGDHR-------LKNYSSIVTVHPEVI-DGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEH 140 (153)
Q Consensus 73 i~~g~~p-------~~~y~ati~v~p~~~-~g~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~e~ 140 (153)
......| ...+.+-+.+.|.++ .+. |.+.|....||-.......+-.++....-..|.+|++.++.
T Consensus 135 ~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~--t~v~~~~~~DpkG~iP~~lvN~~~~~~~~~~~~~Lr~~~~~ 208 (209)
T cd08905 135 THFGLMPEQKGFIRAENGPTCIVLRPLAGDPSK--TKLTWLLSIDLKGWLPKSIINQVLSQTQVDFANHLRQRMAS 208 (209)
T ss_pred ecCCCCCCCCCeEEEEeeccEEEEEECCCCCCc--eEEEEEEeecCCCCCCHHHHHHHhHHhHHHHHHHHHHHHhc
Confidence 2111122 356667788899763 243 66666666665222233455567777788889999998874
No 46
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=96.93 E-value=0.099 Score=39.94 Aligned_cols=136 Identities=13% Similarity=0.050 Sum_probs=71.5
Q ss_pred eecCChHHHH-HHHhcCCCCCccCCceeEEEE-E--cCCCCCeEEEEEee-cCCCC---ceEEEEEEEEeCCCC-EEEEE
Q 031801 2 IVGILDNQVW-SLVRRFDQPQKYKPFVSRCIV-Q--GDLQIGSVREVNVK-SGLPA---TTSTERLELLDDEEH-IFGMR 72 (153)
Q Consensus 2 vI~ap~~~VW-~~v~df~~~~~w~p~v~~~~~-~--G~~~vG~~R~~~~~-~G~~~---~~~~E~l~~~D~~~~-~~~y~ 72 (153)
++++|+++++ .++.|....++|.+.+.++++ + +++. =-.+.+... .+.|. ..+.-+-..-+.+.. .+..+
T Consensus 56 ~v~~~~~~l~~~ll~D~~~~~~W~~~~~~~~vi~~~~~~~-~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~~~~~i~~~~s 134 (209)
T cd08906 56 FMQCPAELVYQEVILQPEKMVLWNKTVSACQVLQRVDDNT-LVSYDVAAGAAGGVVSPRDFVNVRRIERRRDRYVSAGIS 134 (209)
T ss_pred EEcCCHHHHHHHHHhChhhccccCccchhhhheeeccCCc-EEEEEEccccccCCCCCCceEEEEEEEecCCcEEEEEEE
Confidence 5899999998 689999999999999999975 3 2210 011222221 11121 223223333333332 12233
Q ss_pred EecCCCC-ceee-------EEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031801 73 IVGGDHR-LKNY-------SSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEH 140 (153)
Q Consensus 73 i~~g~~p-~~~y-------~ati~v~p~~~~g~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~e~ 140 (153)
+.....| .++| .+.+...+..+.++ |.+.|....||-.......+-.++....-..|.+|++.++.
T Consensus 135 v~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~--t~vt~~~~~Dp~G~lP~~lvN~~~~~~~~~~~~~LR~~~~~ 208 (209)
T cd08906 135 TTHSHKPPLSKYVRGENGPGGFVVLKSASNPSV--CTFIWILNTDLKGRLPRYLIHQSLAATMFEFASHLRQRIRD 208 (209)
T ss_pred EecCCCCCCCCeEEEeeeccEEEEEECCCCCCc--eEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3322233 2222 23233333222333 55555555565222233455677777777888999988864
No 47
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=96.92 E-value=0.11 Score=39.70 Aligned_cols=31 Identities=13% Similarity=0.265 Sum_probs=29.3
Q ss_pred eecCChHHHHHHHhcCCCCCccCCceeEEEE
Q 031801 2 IVGILDNQVWSLVRRFDQPQKYKPFVSRCIV 32 (153)
Q Consensus 2 vI~ap~~~VW~~v~df~~~~~w~p~v~~~~~ 32 (153)
+|++|+++||+++.|....++|.+.++++++
T Consensus 52 ~v~as~~~v~~ll~D~~~r~~Wd~~~~~~~v 82 (205)
T cd08874 52 VIKAPLATVWKAVKDPRTRFLYDTMIKTARI 82 (205)
T ss_pred EEcCCHHHHHHHHhCcchhhhhHHhhhheee
Confidence 5899999999999999999999999999985
No 48
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=96.17 E-value=0.22 Score=37.89 Aligned_cols=133 Identities=12% Similarity=0.068 Sum_probs=74.1
Q ss_pred eecCChHHHHHHHhcCCCCCccCCceeEEE-EEcCCCCCeEEEEEeecCCCC-ceEEEEE------EEEeCCCCEEEEEE
Q 031801 2 IVGILDNQVWSLVRRFDQPQKYKPFVSRCI-VQGDLQIGSVREVNVKSGLPA-TTSTERL------ELLDDEEHIFGMRI 73 (153)
Q Consensus 2 vI~ap~~~VW~~v~df~~~~~w~p~v~~~~-~~G~~~vG~~R~~~~~~G~~~-~~~~E~l------~~~D~~~~~~~y~i 73 (153)
+|++|++.+.+++.|...++.|.|++.+++ ++..+..-.+-++.+. .|- -.-||-+ ..+++ +..+....
T Consensus 53 ~i~~~~~~~~~vl~d~~~~~~W~p~~~~~~~l~~~~~~~~v~y~~~~--~PwPv~~RD~v~~~~~~~~~~~-~~~i~i~~ 129 (215)
T cd08877 53 EIDGPLFNLLALLNEVELYKTWVPFCIRSKKVKQLGRADKVCYLRVD--LPWPLSNREAVFRGFGVDRLEE-NGQIVILL 129 (215)
T ss_pred EecCChhHeEEEEehhhhHhhhcccceeeEEEeecCCceEEEEEEEe--CceEecceEEEEEEEEEeeecc-CCCEEEEE
Confidence 588999999999999999999999987775 4421111122223222 110 1112222 22323 23332221
Q ss_pred --ecC----------CCC--------ceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCC-CCHHHHHHHHHHHHHHHHH
Q 031801 74 --VGG----------DHR--------LKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDG-NTKDETCYFVEALIKCNLK 132 (153)
Q Consensus 74 --~~g----------~~p--------~~~y~ati~v~p~~~~g~~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~ 132 (153)
+.. .+| ...+.+-+.++|.+++. |.+......||-.. .....+-.+...+....|.
T Consensus 130 ~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~---t~v~~~~~~DP~g~~IP~~liN~~~k~~~~~~~~ 206 (215)
T cd08877 130 KSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTK---CYLRFVANVDPKMSLVPKSLLNFVARKFAGLLFE 206 (215)
T ss_pred ecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCC---eEEEEEEEcCCCcccCCHHHHHHHHHHHHHHHHH
Confidence 110 012 34677778889987443 45444545564222 2344555666677778888
Q ss_pred HHHHHHhh
Q 031801 133 SLADVSEH 140 (153)
Q Consensus 133 ~L~~~~e~ 140 (153)
+|++.+++
T Consensus 207 ~l~k~~~~ 214 (215)
T cd08877 207 KIQKAAKN 214 (215)
T ss_pred HHHHHHhc
Confidence 88888764
No 49
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=96.09 E-value=0.33 Score=34.83 Aligned_cols=128 Identities=21% Similarity=0.300 Sum_probs=73.4
Q ss_pred eecCChHHHHHHHhcCCCCCccCCceeEEEE-EcCCCCCeEEEEEee---cCCCC-ceEEEEEEE--EeCCCCEEEEEEe
Q 031801 2 IVGILDNQVWSLVRRFDQPQKYKPFVSRCIV-QGDLQIGSVREVNVK---SGLPA-TTSTERLEL--LDDEEHIFGMRIV 74 (153)
Q Consensus 2 vI~ap~~~VW~~v~df~~~~~w~p~v~~~~~-~G~~~vG~~R~~~~~---~G~~~-~~~~E~l~~--~D~~~~~~~y~i~ 74 (153)
.|+||.|.||+.-+..+++..--|--. +.+ +|. .++..-++.++ -|.|+ ...+-++++ +|+. .+|+=..+
T Consensus 9 ~i~aP~E~VWafhsrpd~lq~LTppw~-VV~p~g~-eitqgtri~m~l~pfglp~~~tW~Arhte~~~d~~-~~FtDv~i 85 (153)
T COG4276 9 TITAPHEMVWAFHSRPDALQRLTPPWI-VVLPLGS-EITQGTRIAMGLTPFGLPAGLTWVARHTESGFDNG-SRFTDVCI 85 (153)
T ss_pred EecCCHHHHhhhhcCccHHHhcCCCcE-EeccCCC-cccceeeeeecceeecCCCCceEEEEeeecccCCc-ceeeeeee
Confidence 599999999999999998866554322 222 341 23332222221 12221 345566666 8875 77888888
Q ss_pred cCCCCceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCH-----HHHHHHHHHHHHHHHHHHHH
Q 031801 75 GGDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTK-----DETCYFVEALIKCNLKSLAD 136 (153)
Q Consensus 75 ~g~~p~~~y~ati~v~p~~~~g~~~t~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~L~~ 136 (153)
.|++|.-++.-+=++.+.+ ++ |....+-.+.+|.+..- ..+.-.++.+|+.--..|++
T Consensus 86 ~gPfp~~~WrHtH~F~~eg-g~---TvliD~Vsye~p~g~~~~~~g~~l~q~~l~~mFr~Rhs~l~r 148 (153)
T COG4276 86 TGPFPALNWRHTHNFVDEG-GG---TVLIDSVSYELPAGTLTGMFGYRLTQLILDLMFRSRHSTLFR 148 (153)
T ss_pred cCCccceeeEEEeeeecCC-Cc---EEEEeeEEeeccCcceechhhhhhHHHHHHHHHHHHHHHHhh
Confidence 8887765566566666654 34 56666666666655211 22334455555544444433
No 50
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=95.92 E-value=0.41 Score=34.55 Aligned_cols=63 Identities=21% Similarity=0.233 Sum_probs=45.3
Q ss_pred ChHHHHHHH-hcCCCCCccCCceeEEEE-EcCCCCCeEEEEEeecCCCCceEEEEEEEEeCCCCEEEEEEec
Q 031801 6 LDNQVWSLV-RRFDQPQKYKPFVSRCIV-QGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVG 75 (153)
Q Consensus 6 p~~~VW~~v-~df~~~~~w~p~v~~~~~-~G~~~vG~~R~~~~~~G~~~~~~~E~l~~~D~~~~~~~y~i~~ 75 (153)
..+++|.-| ..-.+...+.|.+.+|++ +..+ --..|.++|+.. .++|++....+ ..+.|.+..
T Consensus 18 Tr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~-~~l~Rel~f~~~----~v~e~vt~~~~--~~v~f~~~~ 82 (141)
T cd08863 18 TRAQLWRGLVLRAREPQLFVPGLDRCEVLSESG-TVLERELTFGPA----KIRETVTLEPP--SRVHFLQAD 82 (141)
T ss_pred CHHHHHhHHHhhhCCchhcccccceEEEEecCC-CEEEEEEEECCc----eEEEEEEecCC--cEEEEEecC
Confidence 468999654 455566789999999996 4322 135699999754 78998886544 578888865
No 51
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=95.66 E-value=0.38 Score=37.72 Aligned_cols=31 Identities=13% Similarity=0.319 Sum_probs=29.4
Q ss_pred eecCChHHHHHHHhcCCCCCccCCceeEEEE
Q 031801 2 IVGILDNQVWSLVRRFDQPQKYKPFVSRCIV 32 (153)
Q Consensus 2 vI~ap~~~VW~~v~df~~~~~w~p~v~~~~~ 32 (153)
++++|++++++++.|....++|.+.+.+|++
T Consensus 88 ~vd~s~e~v~~lL~D~~~r~~Wd~~~~e~~v 118 (240)
T cd08913 88 VVHVDAAQAFLLLSDLRRRPEWDKHYRSCEL 118 (240)
T ss_pred EEcCCHHHHHHHHhChhhhhhhHhhccEEEE
Confidence 5899999999999999999999999999985
No 52
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=95.54 E-value=0.53 Score=36.81 Aligned_cols=101 Identities=13% Similarity=0.068 Sum_probs=57.2
Q ss_pred eecCChHHHHHHHhcCCCCCccCCceeEEEE-E--cCCCCCeEEEEEeecC---CCCceEEEEEEE--EeCCC-CEEEEE
Q 031801 2 IVGILDNQVWSLVRRFDQPQKYKPFVSRCIV-Q--GDLQIGSVREVNVKSG---LPATTSTERLEL--LDDEE-HIFGMR 72 (153)
Q Consensus 2 vI~ap~~~VW~~v~df~~~~~w~p~v~~~~~-~--G~~~vG~~R~~~~~~G---~~~~~~~E~l~~--~D~~~-~~~~y~ 72 (153)
++++|++++++++.|....++|.+.+.++++ + ++ ..+-.+ ..+..- .+...+.-+-.. .+.+. ..+..+
T Consensus 84 ~vd~s~~~v~dlL~D~~~R~~WD~~~~e~evI~~id~-d~~iyy-~~~p~PwPvk~RDfV~~~s~~~~~~~~~~~~I~~~ 161 (235)
T cd08873 84 KVQTCASDAFDLLSDPFKRPEWDPHGRSCEEVKRVGE-DDGIYH-TTMPSLTSEKPNDFVLLVSRRKPATDGDPYKVAFR 161 (235)
T ss_pred EecCCHHHHHHHHhCcchhhhhhhcccEEEEEEEeCC-CcEEEE-EEcCCCCCCCCceEEEEEEEEeccCCCCeEEEEEe
Confidence 5899999999999999999999999999985 4 33 223333 322210 111222222221 22222 223333
Q ss_pred Eec-CCC-------CceeeEEEEEEEeecCCCcceEEEEE
Q 031801 73 IVG-GDH-------RLKNYSSIVTVHPEVIDGRPGTLVIE 104 (153)
Q Consensus 73 i~~-g~~-------p~~~y~ati~v~p~~~~g~~~t~~~~ 104 (153)
-+. ... ....+.+-+.+.|.+++++.+++..+
T Consensus 162 SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~ 201 (235)
T cd08873 162 SVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNE 201 (235)
T ss_pred eeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEE
Confidence 233 112 24677888999998745554444333
No 53
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=95.36 E-value=0.86 Score=34.43 Aligned_cols=138 Identities=13% Similarity=0.027 Sum_probs=71.8
Q ss_pred eecCChHHHHH-HHhcCCCCCccCCceeEEEE-Ec-CCCCCeEEEEEeec-CCC---CceEEEEEEEEeCCCCEEEEEEe
Q 031801 2 IVGILDNQVWS-LVRRFDQPQKYKPFVSRCIV-QG-DLQIGSVREVNVKS-GLP---ATTSTERLELLDDEEHIFGMRIV 74 (153)
Q Consensus 2 vI~ap~~~VW~-~v~df~~~~~w~p~v~~~~~-~G-~~~vG~~R~~~~~~-G~~---~~~~~E~l~~~D~~~~~~~y~i~ 74 (153)
+|++|+++|.. ++.|....++|.+.+..+++ +. ++..--+..+.... +.+ ...+--|-...++....+...-+
T Consensus 55 ~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~~~~~i~~~sv 134 (208)
T cd08868 55 VLDCPAEFLYNELVLNVESLPSWNPTVLECKIIQVIDDNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRENCYLSSGVSV 134 (208)
T ss_pred EEcCCHHHHHHHHHcCccccceecCcccceEEEEEecCCcEEEEEEecCcCCCcccccceEEEEEEEecCCeEEEEEEec
Confidence 58999999985 67799999999999988874 42 21111112222111 111 12222232233333332222223
Q ss_pred c-CCCC-------ceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031801 75 G-GDHR-------LKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNT-KDETCYFVEALIKCNLKSLADVSEHL 141 (153)
Q Consensus 75 ~-g~~p-------~~~y~ati~v~p~~~~g~~~t~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~L~~~~e~~ 141 (153)
+ ...| ...+.+-+.+.|.++ +...|.+.+....|| .|.. ...+..++....-..+++|+++++++
T Consensus 135 ~h~~~P~~~g~VR~~~~~~~~~i~p~~~-~~~~t~v~~~~~~Dp-~G~iP~~lvN~~~~~~~~~~~~~Lr~~~~~~ 208 (208)
T cd08868 135 EHPAMPPTKNYVRGENGPGCWILRPLPN-NPNKCNFTWLLNTDL-KGWLPQYLVDQALASVLLDFMKHLRKRIATL 208 (208)
T ss_pred cCCCCCCCCCeEEEeccccEEEEEECCC-CCCceEEEEEEEECC-CCCCcceeeehhhHHHHHHHHHHHHHHHhhC
Confidence 2 1122 345667788888753 211255555555664 2222 12233444555667788888888753
No 54
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=95.14 E-value=1 Score=34.18 Aligned_cols=136 Identities=15% Similarity=0.062 Sum_probs=70.0
Q ss_pred eecCChHHHHHHHhcCCCC--CccCCceeEEEE-Ec-CCCCCeEEEEEee-c-CC---CCceEE-EEEEEEeCCCCEEEE
Q 031801 2 IVGILDNQVWSLVRRFDQP--QKYKPFVSRCIV-QG-DLQIGSVREVNVK-S-GL---PATTST-ERLELLDDEEHIFGM 71 (153)
Q Consensus 2 vI~ap~~~VW~~v~df~~~--~~w~p~v~~~~~-~G-~~~vG~~R~~~~~-~-G~---~~~~~~-E~l~~~D~~~~~~~y 71 (153)
+|+++++++++++-|-.+. ++|.+.+.++++ +- +....-++. ... . +. +...+. ......++....+.+
T Consensus 53 ~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~~i~~~-~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~ 131 (208)
T cd08903 53 IVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDVSVCRT-VTPSAAMKIISPRDFVDVVLVKRYEDGTISSNA 131 (208)
T ss_pred EecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCCEEEEEE-ecchhcCCCcCCCceEEEEEEEecCCceEEEeE
Confidence 5899999999999887665 799999999985 42 211122222 111 1 10 112222 222223333233333
Q ss_pred EEecCC-CC-ce------eeEEEEEEEeecC-CCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031801 72 RIVGGD-HR-LK------NYSSIVTVHPEVI-DGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEH 140 (153)
Q Consensus 72 ~i~~g~-~p-~~------~y~ati~v~p~~~-~g~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~e~ 140 (153)
..++.+ .| -. .+.+-..+.|... .++ |.+.|....|+-.......+..++.......|.+|++.+..
T Consensus 132 ~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~--t~v~~~~~~DpkG~iP~~lvn~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08903 132 TNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDK--TQLVSFFQTDLSGYLPQTVVDSFFPASMAEFYNNLTKAVKA 207 (208)
T ss_pred EeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCc--eEEEEEEEeccCCCcCHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 333332 22 11 2212233444421 233 55566666665222233455566666677888899888754
No 55
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=95.13 E-value=0.86 Score=33.12 Aligned_cols=126 Identities=19% Similarity=0.140 Sum_probs=62.7
Q ss_pred eecCChHHHHHHHhcCCCCC---ccCC----ceeEEEEEcCCCCCeEEEEE--ee-cCCCC--------ceEEEEEEEE-
Q 031801 2 IVGILDNQVWSLVRRFDQPQ---KYKP----FVSRCIVQGDLQIGSVREVN--VK-SGLPA--------TTSTERLELL- 62 (153)
Q Consensus 2 vI~ap~~~VW~~v~df~~~~---~w~p----~v~~~~~~G~~~vG~~R~~~--~~-~G~~~--------~~~~E~l~~~- 62 (153)
.+++|+++||+++.|-.-+. .-.. .+.+++..|+ |....++ +. +..|. ...-++-..+
T Consensus 6 ~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~~~~---g~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~e~w~ 82 (159)
T PF10698_consen 6 EYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFEVDGD---GVRVTVRQTVPADKLPSAARKFVGGDLRVTRTETWT 82 (159)
T ss_pred EcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEEcCC---eEEEEEEEecChhhCCHHHHHhcCCCeEEEEEEEEe
Confidence 47899999999999743221 1111 2333333443 2211111 11 22221 1222334444
Q ss_pred --eCCCCEEEEEEecCCCCceeeEEEEEEEeecCCCcceEEEEEEEE--eeCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 031801 63 --DDEEHIFGMRIVGGDHRLKNYSSIVTVHPEVIDGRPGTLVIESFV--VDVPDGNTKDETCYFVEALIKCNLKSLADV 137 (153)
Q Consensus 63 --D~~~~~~~y~i~~g~~p~~~y~ati~v~p~~~~g~~~t~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~ 137 (153)
++..++.+|++.-...|+ ...+++.|.|.+ +|| ....... +.+|. ....+.+++...+...|+...+.
T Consensus 83 ~~~~g~~~g~~~~~~~G~P~-~~~G~~~L~~~~-~gt---~~~~~g~v~v~VPl--vGgkiE~~v~~~~~~~~~~e~~~ 154 (159)
T PF10698_consen 83 PLDDGRRTGTFTVSIPGAPV-SISGTMRLRPDG-GGT---RLTVEGEVKVKVPL--VGGKIEKAVAENLRKLLEAEQEF 154 (159)
T ss_pred cCCCCeEEEEEEEEecCceE-EEEEEEEEecCC-CCE---EEEEEEEEEEEEcc--ccHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777664333466 788999999955 565 2233333 34442 22334444444455555544443
No 56
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=94.95 E-value=1.2 Score=33.93 Aligned_cols=135 Identities=10% Similarity=-0.019 Sum_probs=72.9
Q ss_pred cCChHHHHHHHhcCCCCCccCCceeEEEE-EcCCCCCeEEEEEeecCCCC---ceEEEEEEEEeCCCCEE-EEEEecCCC
Q 031801 4 GILDNQVWSLVRRFDQPQKYKPFVSRCIV-QGDLQIGSVREVNVKSGLPA---TTSTERLELLDDEEHIF-GMRIVGGDH 78 (153)
Q Consensus 4 ~ap~~~VW~~v~df~~~~~w~p~v~~~~~-~G~~~vG~~R~~~~~~G~~~---~~~~E~l~~~D~~~~~~-~y~i~~g~~ 78 (153)
++|++.+++++.|....+.|.+.+..+++ +--+.--.+-+..++...|. ..+.-+...-++....+ ..++.....
T Consensus 57 ~~s~e~~~~~l~D~~~r~~Wd~~~~e~~~ie~~d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~~~~vi~~~sv~~~~~ 136 (222)
T cd08871 57 DVPAETLYDVLHDPEYRKTWDSNMIESFDICQLNPNNDIGYYSAKCPKPLKNRDFVNLRSWLEFGGEYIIFNHSVKHKKY 136 (222)
T ss_pred CCCHHHHHHHHHChhhhhhhhhhhceeEEEEEcCCCCEEEEEEeECCCCCCCCeEEEEEEEEeCCCEEEEEeccccCCCC
Confidence 78999999999998888999999888864 42111122333333321111 22222222223322121 112221112
Q ss_pred C-------ceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 031801 79 R-------LKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNT-KDETCYFVEALIKCNLKSLADVSEHLA 142 (153)
Q Consensus 79 p-------~~~y~ati~v~p~~~~g~~~t~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~L~~~~e~~~ 142 (153)
| ...+.+-+.++|.++++ |.+.+....|+ .|.. ...+..++....-..|++|++++++-.
T Consensus 137 P~~~g~VR~~~~~~g~~i~p~~~~~---t~vt~~~~~Dp-~G~IP~~lvN~~~~~~~~~~l~~l~k~~~~y~ 204 (222)
T cd08871 137 PPRKGFVRAISLLTGYLIRPTGPKG---CTLTYVTQNDP-KGSLPKWVVNKATTKLAPKVMKKLHKAALKYP 204 (222)
T ss_pred CCCCCeEEeEEEccEEEEEECCCCC---EEEEEEEecCC-CCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 2 23456667888876444 44445555554 2322 233445556667788888888887654
No 57
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=94.49 E-value=1.6 Score=33.11 Aligned_cols=132 Identities=14% Similarity=0.105 Sum_probs=71.6
Q ss_pred cCChHHHHHHHhcCCCCCccCCceeEEEE-EcCCCCCe-EEEEEeecCCCC---ceEEEEEEEEe-CCCCEEEEEEecC-
Q 031801 4 GILDNQVWSLVRRFDQPQKYKPFVSRCIV-QGDLQIGS-VREVNVKSGLPA---TTSTERLELLD-DEEHIFGMRIVGG- 76 (153)
Q Consensus 4 ~ap~~~VW~~v~df~~~~~w~p~v~~~~~-~G~~~vG~-~R~~~~~~G~~~---~~~~E~l~~~D-~~~~~~~y~i~~g- 76 (153)
++|++.+.+++.|....++|.+.+.++++ +-+...|. +-++.+.---|. ..+--+-...+ +....+..+-+.-
T Consensus 60 ~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~i~~~sv~~~ 139 (209)
T cd08870 60 DCTPELLRDFYWDDEYRKKWDETVIEHETLEEDEKSGTEIVRWVKKFPFPLSDREYVIARRLWESDDRSYVCVTKGVPYP 139 (209)
T ss_pred CCCHHHHHHHHcChhhHhhhhhheeeEEEEEecCCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCCCEEEEEEeCCcCC
Confidence 67999999999998888999999888874 42211122 112222211111 22222322233 2222222222222
Q ss_pred ------CCCceeeEEEEEEEee--cCCCcceEEEEEEEEeeCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Q 031801 77 ------DHRLKNYSSIVTVHPE--VIDGRPGTLVIESFVVDVPDGN-TKDETCYFVEALIKCNLKSLADVSE 139 (153)
Q Consensus 77 ------~~p~~~y~ati~v~p~--~~~g~~~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~L~~~~e 139 (153)
-..+..|.+.+.+.|. ++++ |-+..++..+| .|. ....+..+.....-..|++|++++.
T Consensus 140 ~~P~~~~vRv~~~~~~~~i~p~~~~~~~---t~~~~~~~~dp-~G~IP~wlvN~~~~~~~~~~l~~l~~a~~ 207 (209)
T cd08870 140 SVPRSGRKRVDDYESSLVIRAVKGDGQG---SACEVTYFHNP-DGGIPRELAKLAVKRGMPGFLKKLENALR 207 (209)
T ss_pred CCCCCCcEEEEEEEeEEEEEEecCCCCc---eEEEEEEEECC-CCCCCHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 1235688899999998 4333 33344444454 332 3344556666666677778877763
No 58
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=94.12 E-value=1.9 Score=32.67 Aligned_cols=134 Identities=13% Similarity=0.136 Sum_probs=77.7
Q ss_pred ecCChHHHHHHHhcCCCCCccCCceeEEEE-EcCCCCCe-EEEEEeecCCCC---ceEEEEEEEEeCCCCEEE---EEEe
Q 031801 3 VGILDNQVWSLVRRFDQPQKYKPFVSRCIV-QGDLQIGS-VREVNVKSGLPA---TTSTERLELLDDEEHIFG---MRIV 74 (153)
Q Consensus 3 I~ap~~~VW~~v~df~~~~~w~p~v~~~~~-~G~~~vG~-~R~~~~~~G~~~---~~~~E~l~~~D~~~~~~~---y~i~ 74 (153)
.++|++.+.+++-|....++|.+.+.++++ +.+...+. +-++.+.-.-|. ..+--+-...|+++..+. +++.
T Consensus 54 ~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~~i~~~sv~ 133 (207)
T cd08911 54 DDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEENKLIVIVSKAVQ 133 (207)
T ss_pred cCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCCCCEEEEEEecCC
Confidence 489999999999999888999999988874 43211232 223322211121 244444445665544321 2222
Q ss_pred cCC-------CCceeeEEEEEEEeec---CCCcceEEEEEEEEeeCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHhh
Q 031801 75 GGD-------HRLKNYSSIVTVHPEV---IDGRPGTLVIESFVVDVPDGNT-KDETCYFVEALIKCNLKSLADVSEH 140 (153)
Q Consensus 75 ~g~-------~p~~~y~ati~v~p~~---~~g~~~t~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~L~~~~e~ 140 (153)
... ..+..|.+.+.+.|.+ ++|+ .+...+..+| .|.. ...+..+.....-..|++|++++.+
T Consensus 134 hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~---~~~~~~~~dP-gG~IP~~lvN~~~~~~~~~~l~~l~~a~~~ 206 (207)
T cd08911 134 HPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGF---EFVLTYFDNP-GVNIPSYITSWVAMSGMPDFLERLRNAALK 206 (207)
T ss_pred CCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCe---EEEEEEEeCC-CCccCHHHHHHHHHhhccHHHHHHHHHHhc
Confidence 111 1356788999999873 2444 3333433443 3332 3345566777788888888887743
No 59
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=93.66 E-value=2.2 Score=32.82 Aligned_cols=85 Identities=13% Similarity=0.268 Sum_probs=51.8
Q ss_pred eecCChHHHHHHHhcCCCCCccCCceeEEEEE--cCCCCCeEEEEEeecCCC--CceEEEEEEEEeCCCCEEEEEE-ecC
Q 031801 2 IVGILDNQVWSLVRRFDQPQKYKPFVSRCIVQ--GDLQIGSVREVNVKSGLP--ATTSTERLELLDDEEHIFGMRI-VGG 76 (153)
Q Consensus 2 vI~ap~~~VW~~v~df~~~~~w~p~v~~~~~~--G~~~vG~~R~~~~~~G~~--~~~~~E~l~~~D~~~~~~~y~i-~~g 76 (153)
+|..+++.++++|++-..++.+.|+++++++. +.+ -+..-.++. |.| .....-+++-.++. +++.. -+|
T Consensus 75 ligysp~~my~vVS~V~~Y~~FVPwC~kS~V~~~~P~-~~~kA~LeV--GFk~l~E~y~S~Vt~~~p~---l~kt~~~d~ 148 (227)
T KOG3177|consen 75 LIGYSPSEMYSVVSNVSEYHEFVPWCKKSDVTSRRPS-GPLKADLEV--GFKPLDERYTSNVTCVKPH---LTKTVCADG 148 (227)
T ss_pred hhCCCHHHHHHHHHhHHHhhccccceeccceeecCCC-CCceeeEEe--cCcccchhheeeeEEeccc---ceEEeeccc
Confidence 47899999999999999999999999999873 321 123322322 221 12233345544442 44444 334
Q ss_pred CCCceeeEEEEEEEeec
Q 031801 77 DHRLKNYSSIVTVHPEV 93 (153)
Q Consensus 77 ~~p~~~y~ati~v~p~~ 93 (153)
.+ +......+++.|..
T Consensus 149 rL-F~~L~t~Wsf~pg~ 164 (227)
T KOG3177|consen 149 RL-FNHLITIWSFKPGP 164 (227)
T ss_pred cH-HHhhhheeeeccCC
Confidence 33 45556667888765
No 60
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=92.27 E-value=3.8 Score=30.79 Aligned_cols=130 Identities=15% Similarity=-0.008 Sum_probs=68.5
Q ss_pred eecCChHHHHHHHhcCCCCCccCCceeEEEE-E--cCCCCCeEEEEEeecCCCC---ceEEEEEEEEeCCC--CEEEEEE
Q 031801 2 IVGILDNQVWSLVRRFDQPQKYKPFVSRCIV-Q--GDLQIGSVREVNVKSGLPA---TTSTERLELLDDEE--HIFGMRI 73 (153)
Q Consensus 2 vI~ap~~~VW~~v~df~~~~~w~p~v~~~~~-~--G~~~vG~~R~~~~~~G~~~---~~~~E~l~~~D~~~--~~~~y~i 73 (153)
+|++++++|+..+-|. -+.|.+.+.++++ + +++ =.+-+..+..-.|. ..+.-|....+.++ ..+..+-
T Consensus 51 ~v~a~~~~v~~~l~d~--r~~Wd~~~~~~~vie~id~~--~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~~~i~~~S 126 (197)
T cd08869 51 EVEAPPEEVLQRILRE--RHLWDDDLLQWKVVETLDED--TEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGACVLVETS 126 (197)
T ss_pred EeCCCHHHHHHHHHHH--HhccchhhheEEEEEEecCC--cEEEEEEeeCCCCCCCceEEEEEEEEecCCCCcEEEEEEC
Confidence 6899999999988775 3799999999875 4 221 11222222211111 22222233323322 2333333
Q ss_pred ecC--CCC-----ceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 031801 74 VGG--DHR-----LKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSE 139 (153)
Q Consensus 74 ~~g--~~p-----~~~y~ati~v~p~~~~g~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~e 139 (153)
++- ..| ...+.+-+.++|.+++++ .+.+....|| .|..-..+....+.+....|..|++-+.
T Consensus 127 v~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t---~vty~~~~Dp-~G~iP~wl~N~~~~~~~~~~~~l~~~~~ 195 (197)
T cd08869 127 VEHTEPVPLGGVRAVVLASRYLIEPCGSGKS---RVTHICRVDL-RGRSPEWYNKVYGHLCARELLRIRDSFR 195 (197)
T ss_pred CcCCCCCCCCCEEEEEEeeeEEEEECCCCCe---EEEEEEEECC-CCCCCceeecchHhHHHHHHHHHHhhcc
Confidence 321 222 345667788899874444 4444444554 2322223445555667778888877553
No 61
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=92.00 E-value=4.4 Score=30.91 Aligned_cols=134 Identities=7% Similarity=-0.088 Sum_probs=70.2
Q ss_pred eecCChHHHHHHHhcCCCCCccCCceeEEEE-E--cCCCCCeEEEEEeec--CC---CCceEEEEEE-EEeCCCCEEEEE
Q 031801 2 IVGILDNQVWSLVRRFDQPQKYKPFVSRCIV-Q--GDLQIGSVREVNVKS--GL---PATTSTERLE-LLDDEEHIFGMR 72 (153)
Q Consensus 2 vI~ap~~~VW~~v~df~~~~~w~p~v~~~~~-~--G~~~vG~~R~~~~~~--G~---~~~~~~E~l~-~~D~~~~~~~y~ 72 (153)
+|+++++++|+++.+-....+|.+.+.++++ + +++. .+-+..... +. |...+--|-. .++.....+...
T Consensus 53 vi~~~~e~v~~~l~~~e~r~~Wd~~~~~~~iie~Id~~T--~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~~ii~~~ 130 (204)
T cd08904 53 IIPESPAKLIQFMYQPEHRIKWDKSLQVYKMLQRIDSDT--FICHTITQSFAMGSISPRDFVDLVHIKRYEGNMNIVSSV 130 (204)
T ss_pred EecCCHHHHHHHHhccchhhhhcccccceeeEEEeCCCc--EEEEEecccccCCcccCceEEEEEEEEEeCCCEEEEEEE
Confidence 6899999999999986666899999988874 4 2211 121111111 11 1122222221 234433333344
Q ss_pred EecCC-C-Cce------eeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 031801 73 IVGGD-H-RLK------NYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVS 138 (153)
Q Consensus 73 i~~g~-~-p~~------~y~ati~v~p~~~~g~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~ 138 (153)
.++-+ . |-+ ++.+=+-+.|..++-+ .|-.+|....|+-..........+|...+-..+.+|++++
T Consensus 131 sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~-~t~l~~~~~~DlkG~lP~~vv~~~~~~~~~~f~~~~~~~~ 203 (204)
T cd08904 131 SVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPA-YSKLVMFVQPELRGNLSRSVIEKTMPTNLVNLILDAKDGI 203 (204)
T ss_pred ecccCCCCCCCCcEEEeeeccEEEEEECCCCCC-ceEEEEEEEeCCCCCCCHHHHHHHhHHHHHHHHHHHHHhc
Confidence 44433 1 222 3334456777653311 1444666556642222334555666676777777777654
No 62
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=91.96 E-value=3 Score=32.69 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=29.2
Q ss_pred eecCChHHHHHHHhcCCCCCccCCceeEEEE
Q 031801 2 IVGILDNQVWSLVRRFDQPQKYKPFVSRCIV 32 (153)
Q Consensus 2 vI~ap~~~VW~~v~df~~~~~w~p~v~~~~~ 32 (153)
.+++|++++.+++.|..+.++|.+.+.++++
T Consensus 85 ~vdvs~~~l~~LL~D~~~r~~Wd~~~~e~~v 115 (236)
T cd08914 85 HVKRPAHLAYRLLSDFTKRPLWDPHFLSCEV 115 (236)
T ss_pred EEcCCHHHHHHHHhChhhhchhHHhhceEEE
Confidence 5799999999999999999999999999985
No 63
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=91.92 E-value=3.6 Score=29.71 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=28.3
Q ss_pred eecCChHHHHHHHhcCCCCCccCCceeEEEE
Q 031801 2 IVGILDNQVWSLVRRFDQPQKYKPFVSRCIV 32 (153)
Q Consensus 2 vI~ap~~~VW~~v~df~~~~~w~p~v~~~~~ 32 (153)
+|++|+++||+++.|....+.|.+.+.++++
T Consensus 46 ~i~~~~~~v~~~l~d~~~~~~w~~~~~~~~v 76 (193)
T cd00177 46 VIPASPEQVFELLMDIDLRKKWDKNFEEFEV 76 (193)
T ss_pred EECCCHHHHHHHHhCCchhhchhhcceEEEE
Confidence 5889999999999999889999999988874
No 64
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=90.55 E-value=5.9 Score=29.75 Aligned_cols=134 Identities=10% Similarity=-0.044 Sum_probs=69.4
Q ss_pred eecCChHHHHHHHhc--CCCCCccCCceeEEEE-EcCCCCCe-EEEEEeec-CCC----CceE-EEEEEEEeCCCCEEEE
Q 031801 2 IVGILDNQVWSLVRR--FDQPQKYKPFVSRCIV-QGDLQIGS-VREVNVKS-GLP----ATTS-TERLELLDDEEHIFGM 71 (153)
Q Consensus 2 vI~ap~~~VW~~v~d--f~~~~~w~p~v~~~~~-~G~~~vG~-~R~~~~~~-G~~----~~~~-~E~l~~~D~~~~~~~y 71 (153)
+|++++++|..++.| .....+|.+.+.++++ +.-+ ..+ +-+..+.. +.+ ...+ ......+++....+..
T Consensus 53 ~i~~~~~~v~~~l~d~~~~~r~~Wd~~~~~~~~le~id-~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~ 131 (206)
T cd08867 53 IVDALPEKVIDVIIPPCGGLRLKWDKSLKHYEVLEKIS-EDLCVGRTITPSAAMGLISPRDFVDLVYVKRYEDNQWSSSG 131 (206)
T ss_pred EEcCCHHHHHHHHHhcCccccccccccccceEEEEEeC-CCeEEEEEEccccccCccCCcceEEEEEEEEeCCCeEEEEE
Confidence 589999999999998 6677899999999875 4211 112 11221111 000 1111 1222333432222333
Q ss_pred EEecCC-C-Cc------eeeEEEEEEEeecC-CCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 031801 72 RIVGGD-H-RL------KNYSSIVTVHPEVI-DGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVS 138 (153)
Q Consensus 72 ~i~~g~-~-p~------~~y~ati~v~p~~~-~g~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~ 138 (153)
.-++-+ . |. ..+.+-+.+.|..+ .+. |.+.|....|+-.......+..++.......+++|++++
T Consensus 132 ~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~--t~~~~~~~~DpkG~iP~~lvn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 132 KSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDK--SFLVLYVQTDLRGMIPQSLVESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred EeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCc--eEEEEEEEeccCCCCcHHHHHhhhhhhHHHHHHHHHHhc
Confidence 333222 1 22 23344455676532 232 566666666753223334445566666777777787765
No 65
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=89.25 E-value=8.3 Score=29.51 Aligned_cols=134 Identities=12% Similarity=0.021 Sum_probs=69.4
Q ss_pred eecCChHHHHHHHhcCCCCCccCCceeEEEE-E--cCCCCCeE-EEEEeecCC----CCceEEEE-EEEEeCCCCEEEEE
Q 031801 2 IVGILDNQVWSLVRRFDQPQKYKPFVSRCIV-Q--GDLQIGSV-REVNVKSGL----PATTSTER-LELLDDEEHIFGMR 72 (153)
Q Consensus 2 vI~ap~~~VW~~v~df~~~~~w~p~v~~~~~-~--G~~~vG~~-R~~~~~~G~----~~~~~~E~-l~~~D~~~~~~~y~ 72 (153)
+|+..+++||+.+.+-....+|.+.+++|++ + +++ =++ |+++.+..+ |...+-=+ ...+.+.-.+..-+
T Consensus 54 vv~~~~~ev~d~v~~~~~r~~Wd~~v~~~~Iie~Id~d--t~I~~yvt~~~~~~iISpRDFVdv~~~~~~~d~~~s~gvs 131 (202)
T cd08902 54 VVEDVYNRIVDHIRPGPYRLDWDSLMTSMDIIEEFEEN--CCVMRYTTAGQLLNIISPREFVDFSYTTQYEDGLLSCGVS 131 (202)
T ss_pred EecCCHHHHHHHHhcccchhcccchhhheeHhhhhcCC--cEEEEEEcccCCcCccCccceEEEEEEEEeCCCeEEEEee
Confidence 4678899999999886666899999999985 4 332 123 555544222 11122112 22233221111122
Q ss_pred EecCCCC--c---eeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 031801 73 IVGGDHR--L---KNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVS 138 (153)
Q Consensus 73 i~~g~~p--~---~~y~ati~v~p~~~~g~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~ 138 (153)
+.....| + .++-+-+-+.|..++-+ .|.++|....|+-..........+|-+-+-..+..|++++
T Consensus 132 ~~~~~~ppg~VRgen~p~g~i~~Pl~~~p~-k~~~t~~lq~DLkG~LPqsiIdq~~~~~~~~F~~~Lrk~~ 201 (202)
T cd08902 132 IEYEEARPNFVRGFNHPCGWFCVPLKDNPS-HSLLTGYIQTDLRGMLPQSAVDTAMASTLVNFYSDLKKAL 201 (202)
T ss_pred ecCCCCCCCeEeecccccEEEEEECCCCCC-ceEEEEEEEecCCCCccHHHHHHHhhHHHHHHHHHHHHhc
Confidence 2222222 1 23334456778763323 3566777777653222233445555555555666666654
No 66
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=87.86 E-value=9.2 Score=28.31 Aligned_cols=134 Identities=12% Similarity=-0.035 Sum_probs=69.3
Q ss_pred eecCChHHHH-HHHhcCCCCCccCCceeEEEE-Ec-CCCCCeEEEEEeecCC-CC---ceEEEEEEEE-eCCCCEEEEEE
Q 031801 2 IVGILDNQVW-SLVRRFDQPQKYKPFVSRCIV-QG-DLQIGSVREVNVKSGL-PA---TTSTERLELL-DDEEHIFGMRI 73 (153)
Q Consensus 2 vI~ap~~~VW-~~v~df~~~~~w~p~v~~~~~-~G-~~~vG~~R~~~~~~G~-~~---~~~~E~l~~~-D~~~~~~~y~i 73 (153)
+|+++++++. .++.|....+.|.+.+.++++ +- +.+ ..+.+.....-. |. ..+--+-... ++....+..+-
T Consensus 52 ~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~~~~ie~~~~~-~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~~~vi~~~S 130 (206)
T smart00234 52 VVPMVCADLVEELMDDLRYRPEWDKNVAKAETLEVIDNG-TVIYHYVSKFVAGPVSPRDFVFVRYWRELVDGSYAVVDVS 130 (206)
T ss_pred EEecChHHHHHHHHhcccchhhCchhcccEEEEEEECCC-CeEEEEEEecccCcCCCCeEEEEEEEEEcCCCcEEEEEEE
Confidence 5788888744 788898888999999988874 41 111 244444333111 21 1221122222 23333333322
Q ss_pred ecCC-CC-------ceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHhh
Q 031801 74 VGGD-HR-------LKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNT-KDETCYFVEALIKCNLKSLADVSEH 140 (153)
Q Consensus 74 ~~g~-~p-------~~~y~ati~v~p~~~~g~~~t~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~L~~~~e~ 140 (153)
+..+ .| ...+.+-+.++|.+++. |.+.+....++ .|.. ...+..++....-..++.|++.+..
T Consensus 131 v~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~---t~vt~~~~~D~-~G~iP~~lvn~~~~~~~~~~~~~~~~~~~~ 202 (206)
T smart00234 131 VTHPTSPPTSGYVRAENLPSGLLIEPLGNGP---SKVTWVSHADL-KGWLPHWLVRSLIKSGLAEFAKTWVATLQK 202 (206)
T ss_pred CCCCCCCCCCCceEEEEeceEEEEEECCCCC---eEEEEEEEEec-CCCccceeehhhhhhhHHHHHHHHHHHHHH
Confidence 2222 22 24677778889987443 44445555554 1211 2223444455555666666666654
No 67
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=86.52 E-value=12 Score=28.32 Aligned_cols=132 Identities=14% Similarity=0.116 Sum_probs=70.9
Q ss_pred eec-CChHHHHHHHhcCCCCCccCCceeEEEE-EcCCCCCeEEEEEeecCCCC---ceE-EEEEEEEeCCCCEEEE---E
Q 031801 2 IVG-ILDNQVWSLVRRFDQPQKYKPFVSRCIV-QGDLQIGSVREVNVKSGLPA---TTS-TERLELLDDEEHIFGM---R 72 (153)
Q Consensus 2 vI~-ap~~~VW~~v~df~~~~~w~p~v~~~~~-~G~~~vG~~R~~~~~~G~~~---~~~-~E~l~~~D~~~~~~~y---~ 72 (153)
+++ ++++.+.+++-|....++|.+.+.++.- ..++ -.+-++.++-.-|. ..+ .-+...+|.....+.. +
T Consensus 56 ~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~~~~~~--~~i~y~~~k~PwPvs~RD~V~~r~~~~~~~~~~~~~iv~~~ 133 (207)
T cd08910 56 VLEDCSPSLLADVYMDLEYRKQWDQYVKELYEKECDG--ETVIYWEVKYPFPLSNRDYVYIRQRRDLDVEGRKIWVILAR 133 (207)
T ss_pred EEcCCCHHHHHHHHhCHHHHHHHHHHHHhheeecCCC--CEEEEEEEEcCCCCCCceEEEEEEeccccCCCCeEEEEEec
Confidence 355 7999999999999988999998766421 2221 12223333211111 122 1122234433332111 1
Q ss_pred EecCC--------CCceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHh
Q 031801 73 IVGGD--------HRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNT-KDETCYFVEALIKCNLKSLADVSE 139 (153)
Q Consensus 73 i~~g~--------~p~~~y~ati~v~p~~~~g~~~t~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~L~~~~e 139 (153)
.++-+ ..+..|.+.+.++|.+++++ .+...+..+| .|.. ...+..+.....-..|++|+++..
T Consensus 134 s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t---~i~~~~~~DP-gG~IP~wlvN~~~~~~~~~~l~~l~ka~~ 205 (207)
T cd08910 134 STSLPQLPEKPGVIRVKQYKQSLAIESDGKKGS---KVFMYYFDNP-GGMIPSWLINWAAKNGVPNFLKDMQKACQ 205 (207)
T ss_pred CCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCce---EEEEEEEeCC-CCcchHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 12111 13568889999998764444 4344444554 3333 234456666677778888887764
No 68
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=86.09 E-value=13 Score=28.34 Aligned_cols=130 Identities=9% Similarity=-0.029 Sum_probs=71.4
Q ss_pred eecCChHHHHHHHhcCCCCCccCCceeEEEE-E--cCCCCCeEEEEEeecC--CCC-ceEEEEEEEEeCCCCEEEEEEe-
Q 031801 2 IVGILDNQVWSLVRRFDQPQKYKPFVSRCIV-Q--GDLQIGSVREVNVKSG--LPA-TTSTERLELLDDEEHIFGMRIV- 74 (153)
Q Consensus 2 vI~ap~~~VW~~v~df~~~~~w~p~v~~~~~-~--G~~~vG~~R~~~~~~G--~~~-~~~~E~l~~~D~~~~~~~y~i~- 74 (153)
.|++++++|...+-|- .+.|.+.+.++.+ + +++. .+-+..+..- .+. ..+.-|.-..+..+..+.....
T Consensus 59 ~i~a~~~~vl~~lld~--~~~Wd~~~~e~~vIe~ld~~~--~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~g~~~I~~~S 134 (204)
T cd08908 59 EVPAAPEEILKRLLKE--QHLWDVDLLDSKVIEILDSQT--EIYQYVQNSMAPHPARDYVVLRTWRTNLPKGACALLATS 134 (204)
T ss_pred EeCCCHHHHHHHHHhh--HHHHHHHhhheEeeEecCCCc--eEEEEEccCCCCCCCcEEEEEEEEEEeCCCCeEEEEEee
Confidence 5899999999998776 6899998877764 4 2211 1111111111 111 2233333333333333332222
Q ss_pred --cCCCC-----ceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 031801 75 --GGDHR-----LKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSE 139 (153)
Q Consensus 75 --~g~~p-----~~~y~ati~v~p~~~~g~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~e 139 (153)
....| +..+.+...++|.+++++ .+.+....|| .|..-..+....+.+...-|..|++-+.
T Consensus 135 v~h~~~P~~~VR~~~~~~~w~i~P~g~g~t---~vtyi~~~DP-gG~iP~W~~N~~g~~~~~~~~~~r~sf~ 202 (204)
T cd08908 135 VDHDRAPVAGVRVNVLLSRYLIEPCGSGKS---KLTYMCRIDL-RGHMPEWYTKSFGHLCAAEVVKIRDSFS 202 (204)
T ss_pred cCcccCCcCceEEEEEeeEEEEEECCCCcE---EEEEEEEeCC-CCCCcHHHHhhHHHHHHHHHHHHHhhcc
Confidence 22233 344566778889874444 4344444554 4444455677778888888888887653
No 69
>KOG2936 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.54 E-value=16 Score=29.67 Aligned_cols=109 Identities=12% Similarity=0.138 Sum_probs=62.2
Q ss_pred ecCChHHHHHHHhcCCCCCccCCceeEEEEEcCCCCCeEEEEEeecCCCCceEEEEEEEEeC-CCCEEEEEEecCCCCce
Q 031801 3 VGILDNQVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDD-EEHIFGMRIVGGDHRLK 81 (153)
Q Consensus 3 I~ap~~~VW~~v~df~~~~~w~p~v~~~~~~G~~~vG~~R~~~~~~G~~~~~~~E~l~~~D~-~~~~~~y~i~~g~~p~~ 81 (153)
++++++++.+.+.|-..+..|.-... +++.+ .-|..-.+ +| +++.| ++++.+ .+-.+.|++- +.|-
T Consensus 181 fn~~~~eLy~~fld~~rv~~wt~S~a--~l~~~-~~g~f~lf---~G---nVtg~-~~~~e~~K~Iv~kWrl~--~Wp~- 247 (301)
T KOG2936|consen 181 FNCRVDELYEIFLDPERVKAWTRSPA--ELEAD-PGGKFSLF---DG---NVTGE-FLELEKNKKIVMKWRLK--SWPD- 247 (301)
T ss_pred cCCCHHHHHHHHhcHHHHHHhcCChh--hcccC-CCCceEEe---cc---cceee-eeeecCCCeEEEEEecc--cCCC-
Confidence 68999999999999888888875322 34432 12444333 67 45544 444444 4445678883 3554
Q ss_pred eeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHH
Q 031801 82 NYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIK 128 (153)
Q Consensus 82 ~y~ati~v~p~~~~g~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (153)
.+.|||++++....|. .++.+.. -++|.+. ++.++...+..|=
T Consensus 248 ~~~atI~~~f~~~~~~-t~l~~~~--kgVP~~e-ee~~~~~wq~yyf 290 (301)
T KOG2936|consen 248 GHDATITLTFYESQGE-TKLQVKQ--KGVPIGE-EENTRQGWQEYYF 290 (301)
T ss_pred CccceEEEEEecCCCc-eEEEEEe--cCCCcch-hHHHHhhHHHHhh
Confidence 5678888888754332 1332221 2456554 3344544444443
No 70
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=65.35 E-value=52 Score=24.12 Aligned_cols=132 Identities=18% Similarity=0.078 Sum_probs=71.8
Q ss_pred eecCChHHHHHHHhcCCCCCccCCceeEEEE-E--cCCCCCeEEEEEeecCC--CCceEEE----EEEEE-eCCCCEEEE
Q 031801 2 IVGILDNQVWSLVRRFDQPQKYKPFVSRCIV-Q--GDLQIGSVREVNVKSGL--PATTSTE----RLELL-DDEEHIFGM 71 (153)
Q Consensus 2 vI~ap~~~VW~~v~df~~~~~w~p~v~~~~~-~--G~~~vG~~R~~~~~~G~--~~~~~~E----~l~~~-D~~~~~~~y 71 (153)
+|+++++++...+-+-.. .|.+.+.++++ + .++ ..+.+..+.... |... || +.... .+....+..
T Consensus 53 ~v~~~~~~~~~~~~~~~~--~Wd~~~~~~~~le~~~~~--~~i~~~~~~~~~~~p~~~-RDfv~~~~~~~~~~~~~~i~~ 127 (206)
T PF01852_consen 53 VVPASPEQVVEDLLDDRE--QWDKMCVEAEVLEQIDED--TDIVYFVMKSPWPGPVSP-RDFVFLRSWRKDEDGTYVIVS 127 (206)
T ss_dssp EESSCHHHHHHHHHCGGG--HHSTTEEEEEEEEEEETT--EEEEEEEEE-CTTTTSSE-EEEEEEEEEEECTTSEEEEEE
T ss_pred EEcCChHHHHHHHHhhHh--hcccchhhheeeeecCCC--CeEEEEEecccCCCCCCC-cEEEEEEEEEEeccceEEEEE
Confidence 578888877666555333 99999988874 3 222 345554444322 3222 33 22222 332233333
Q ss_pred EEec-CCC-C-------ceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHhhh
Q 031801 72 RIVG-GDH-R-------LKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTK-DETCYFVEALIKCNLKSLADVSEHL 141 (153)
Q Consensus 72 ~i~~-g~~-p-------~~~y~ati~v~p~~~~g~~~t~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~L~~~~e~~ 141 (153)
+=++ ... + ...+.+-+.++|.+ ++. |.+.+....|+ .|..- ..+..++....-..++.|.+.+++.
T Consensus 128 ~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~-~~~--~~vt~~~~~D~-~G~iP~~~~n~~~~~~~~~~~~~~~~~~~~~ 203 (206)
T PF01852_consen 128 RSIDHPQYPPNSKGYVRAEILISGWVIRPLG-DGR--TRVTYVSQVDP-KGWIPSWLVNMVVKSQPPNFLKNLRKALKKQ 203 (206)
T ss_dssp EEEEBTTSSTT-TTSEEEEEESEEEEEEEET-TCE--EEEEEEEEEES-SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eeeccccccccccCcceeeeeeEeEEEEEcc-CCC--ceEEEEEEECC-CCCChHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 2222 222 2 24666778899987 443 44444555665 33332 3455666676777777787777664
Q ss_pred h
Q 031801 142 A 142 (153)
Q Consensus 142 ~ 142 (153)
.
T Consensus 204 ~ 204 (206)
T PF01852_consen 204 K 204 (206)
T ss_dssp C
T ss_pred c
Confidence 3
No 71
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=28.04 E-value=1.5e+02 Score=18.26 Aligned_cols=55 Identities=11% Similarity=-0.025 Sum_probs=28.5
Q ss_pred CCccCCceeEEEEEcC-CC--CCeEEEEEe-ecCCCCceEEEEEE-EEeCCCCEEEEEEecCC
Q 031801 20 PQKYKPFVSRCIVQGD-LQ--IGSVREVNV-KSGLPATTSTERLE-LLDDEEHIFGMRIVGGD 77 (153)
Q Consensus 20 ~~~w~p~v~~~~~~G~-~~--vG~~R~~~~-~~G~~~~~~~E~l~-~~D~~~~~~~y~i~~g~ 77 (153)
+.-|+|..+++.+.+. .. ......+.. .++ ....=.|. .+.+....|.|+|....
T Consensus 15 F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~~~~---G~w~~~~~~~~~~g~~~Y~y~i~~~~ 74 (85)
T PF02922_consen 15 FRVWAPNAKSVELVLYFNGSWPAEEYPMTRKDDD---GVWEVTVPGDLPPGGYYYKYRIDGDD 74 (85)
T ss_dssp EEEE-TTESEEEEEEETTTSSEEEEEEEEEECTT---TEEEEEEEGCGTTTT-EEEEEEEETT
T ss_pred EEEECCCCCEEEEEEEeeecCCCceEEeeecCCC---CEEEEEEcCCcCCCCEEEEEEEEeCC
Confidence 4579999999987542 21 112233432 223 34444444 45444468888886643
No 72
>cd05703 S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 12 (hs12) and S. cerevisiae S1 repeat 9 (sc9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=22.24 E-value=2e+02 Score=17.61 Aligned_cols=21 Identities=10% Similarity=0.224 Sum_probs=17.0
Q ss_pred ceEEEEEEEEeCCCCEEEEEE
Q 031801 53 TTSTERLELLDDEEHIFGMRI 73 (153)
Q Consensus 53 ~~~~E~l~~~D~~~~~~~y~i 73 (153)
..++=++..+|++++++..++
T Consensus 51 ~~v~~kV~~id~~~~~i~Ls~ 71 (73)
T cd05703 51 QALKAKVVGVDKEHKLLRLSA 71 (73)
T ss_pred CEEEEEEEEEeCCCCEEEEEe
Confidence 567778899999988887765
No 73
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=20.18 E-value=1.6e+02 Score=16.75 Aligned_cols=11 Identities=27% Similarity=0.407 Sum_probs=8.6
Q ss_pred CeEEEEEeecC
Q 031801 39 GSVREVNVKSG 49 (153)
Q Consensus 39 G~~R~~~~~~G 49 (153)
|++|.++|..+
T Consensus 1 GAvR~~kFsP~ 11 (43)
T PF10313_consen 1 GAVRCCKFSPE 11 (43)
T ss_pred CCeEEEEeCCC
Confidence 78899998743
Done!