BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031802
(153 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0CB19|Y3081_ARATH Uncharacterized protein At3g50808 OS=Arabidopsis thaliana
GN=At3g50808 PE=4 SV=1
Length = 110
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 79 IQKVLDISGVQTYVINSARVVFLNER---PQPRPGKGVTNTCEVCDRSL--LDSFRFCSL 133
+ + +DISG+ Y IN +V++N+R R V + C++C+ + S FCS+
Sbjct: 1 MSQYMDISGIHLYSINGFPIVYINQRRGNNNHRSRSNVMHKCKICEWEIDAASSALFCSM 60
Query: 134 GCK 136
CK
Sbjct: 61 ECK 63
>sp|Q38V07|ADEC2_LACSS Adenine deaminase 2 OS=Lactobacillus sakei subsp. sakei (strain
23K) GN=ade2 PE=3 SV=1
Length = 580
Score = 33.9 bits (76), Expect = 0.44, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 46 NGAFCSLCLDYHKDHRAIQIRRSSYHD-VIRVSEIQKVLD-ISGVQTYVINSARVVFLNE 103
N FC LC D D +++ +R + + D IRV+ IQ +D ++ +Q IN+A+ L++
Sbjct: 264 NARFCCLCGD---DLQSVTLRETGHLDESIRVA-IQNGIDPLTAIQMATINTAQCTGLSD 319
Query: 104 RPQPRPG 110
R PG
Sbjct: 320 RGGIAPG 326
>sp|Q5DU02|UBP22_MOUSE Ubiquitin carboxyl-terminal hydrolase 22 OS=Mus musculus GN=Usp22
PE=2 SV=2
Length = 525
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 18/134 (13%)
Query: 23 FVQCKLHPDSHKSECNMYCLDCM-NGAFCSLCLDYHKDHRAIQIRRSSYHDVIRVSEIQK 81
F + +H D KS+ + +D M G +C LC DY D ++I E +K
Sbjct: 85 FTKKHIH-DHAKSKRHNLAIDLMYGGIYCFLCQDYIYDKDI---------EIIAKEEQRK 134
Query: 82 VLDISGV----QTYVINSARVVFLNERPQPRPGKGVTNTCEVCDRSLLDSFRFCSLGCKV 137
+ GV T+ + L P+ R +T+ C + R L++ C + C V
Sbjct: 135 AWKMQGVGEKFSTWEPTKRELELLKHNPKRRK---ITSNCTIGLRGLINLGNTCFMNCIV 191
Query: 138 TLITTNFNVVPFFL 151
+T + FFL
Sbjct: 192 QALTHTPLLRDFFL 205
>sp|Q9VNV3|DDX1_DROME ATP-dependent RNA helicase Ddx1 OS=Drosophila melanogaster GN=Ddx1
PE=2 SV=1
Length = 727
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 24/57 (42%)
Query: 7 DNRWPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHRAI 63
D W +P+ + + +HP +H E + + G +C +D H RAI
Sbjct: 453 DTTWQSLRQPIGTDGVHDRDNVHPGNHSKETLSQAVKLLKGEYCVHAIDKHNMDRAI 509
>sp|P0C8Z3|UBP22_BOVIN Ubiquitin carboxyl-terminal hydrolase 22 OS=Bos taurus GN=USP22
PE=2 SV=1
Length = 514
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 16/133 (12%)
Query: 23 FVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHRAIQIRRSSYHDVIRVSEIQKV 82
F + +H + N+ G +C LC DY D + I+I I E +K
Sbjct: 74 FTKKHIHEHAKSKRHNLAIELMYGGIYCFLCQDYIYD-KDIEI--------IAKEEQRKA 124
Query: 83 LDISGV----QTYVINSARVVFLNERPQPRPGKGVTNTCEVCDRSLLDSFRFCSLGCKVT 138
+ GV T+ + L P+ R +T+ C + R L++ C + C V
Sbjct: 125 WKMQGVGEKFSTWEPTKRELELLKHNPKRRK---ITSNCTIGLRGLINLGNTCFMNCIVQ 181
Query: 139 LITTNFNVVPFFL 151
+T + FFL
Sbjct: 182 ALTHTPLLRDFFL 194
>sp|Q9UPT9|UBP22_HUMAN Ubiquitin carboxyl-terminal hydrolase 22 OS=Homo sapiens GN=USP22
PE=1 SV=2
Length = 525
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 50/133 (37%), Gaps = 16/133 (12%)
Query: 23 FVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHRAIQIRRSSYHDVIRVSEIQKV 82
F + +H + N+ G +C LC DY D ++I E +K
Sbjct: 85 FTKKHIHEHAKAKRHNLAIDLMYGGIYCFLCQDYIYDKDM---------EIIAKEEQRKA 135
Query: 83 LDISGV----QTYVINSARVVFLNERPQPRPGKGVTNTCEVCDRSLLDSFRFCSLGCKVT 138
+ GV T+ + L P+ R +T+ C + R L++ C + C V
Sbjct: 136 WKMQGVGEKFSTWEPTKRELELLKHNPKRRK---ITSNCTIGLRGLINLGNTCFMNCIVQ 192
Query: 139 LITTNFNVVPFFL 151
+T + FFL
Sbjct: 193 ALTHTPLLRDFFL 205
>sp|Q24731|DDX1_DROVI ATP-dependent RNA helicase Ddx1 (Fragment) OS=Drosophila virilis
GN=Ddx1 PE=3 SV=1
Length = 400
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 24/57 (42%)
Query: 7 DNRWPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHRAI 63
D+ W +P+ + +HP + E + + G +C +D HK RAI
Sbjct: 85 DSSWQQLRQPIHTDGVHDHDNVHPTNQSPETFSQAVKLLKGEYCIRAIDQHKMDRAI 141
>sp|O74502|MSH6_SCHPO DNA mismatch repair protein msh6 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=msh6 PE=1 SV=1
Length = 1254
Score = 30.0 bits (66), Expect = 6.1, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 33 HKSECNMYCLDCMNGAFCSLCLDY--HKDHRAIQIRRSSYHDVIRVSEIQKVLDISGVQT 90
H N+ CL + + SLC+D+ H+ R +Q+ + + RV+ + K+ D ++
Sbjct: 1123 HHLVSNIGCLGFFSTHYQSLCVDFMHHRQVRLMQMAAAVDEKIRRVTFLYKLEDGICPKS 1182
Query: 91 YVINSARVVFLNER 104
Y +N A + L E+
Sbjct: 1183 YGMNVASMAGLPEK 1196
>sp|Q6GNI6|UB22A_XENLA Ubiquitin carboxyl-terminal hydrolase 22-A OS=Xenopus laevis
GN=usp22-a PE=2 SV=1
Length = 523
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 28/139 (20%), Positives = 50/139 (35%), Gaps = 13/139 (9%)
Query: 23 FVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHRAIQIRRSSYHDVIRVSEIQKV 82
F + +H + N+ G +C +C DY D Q+ + ++
Sbjct: 68 FTKKHIHEHAKNKRHNLAIDLLYGGIYCFMCQDYIYDKDMEQVAKEEQRKAWKLQVFSPA 127
Query: 83 L------DISGV----QTYVINSARVVFLNERPQPRPGKGVTNTCEVCDRSLLDSFRFCS 132
L ++GV T+ + L P+ R +T C + R L++ C
Sbjct: 128 LVSPYQYTMTGVGEKYSTWEPTKRELELLQHNPKRRK---ITTNCTIGLRGLINLGNTCF 184
Query: 133 LGCKVTLITTNFNVVPFFL 151
+ C V +T + FFL
Sbjct: 185 MNCIVQALTHTPLLRDFFL 203
>sp|Q6DCJ1|UB22B_XENLA Ubiquitin carboxyl-terminal hydrolase 22-B OS=Xenopus laevis
GN=usp22-b PE=2 SV=2
Length = 523
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 28/139 (20%), Positives = 50/139 (35%), Gaps = 13/139 (9%)
Query: 23 FVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHRAIQIRRSSYHDVIRVSEIQKV 82
F + +H + N+ G +C +C DY D Q+ + ++
Sbjct: 68 FTKKHIHEHAKNKRHNLAIDLLYGGIYCFMCQDYIYDKDMEQVAKEEQRKAWKLQVFSPA 127
Query: 83 L------DISGV----QTYVINSARVVFLNERPQPRPGKGVTNTCEVCDRSLLDSFRFCS 132
L ++GV T+ + L P+ R +T C + R L++ C
Sbjct: 128 LVSPYQYTMTGVGEKYSTWEPTKRELELLQHNPKRRK---ITTNCTIGLRGLINLGNTCF 184
Query: 133 LGCKVTLITTNFNVVPFFL 151
+ C V +T + FFL
Sbjct: 185 MNCIVQALTHTPLLRDFFL 203
>sp|Q94481|CIGB_DICDI FNIP repeat-containing protein cigB OS=Dictyostelium discoideum
GN=cigB PE=2 SV=3
Length = 744
Score = 29.3 bits (64), Expect = 9.9, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHR-----AIQIRRSSYHDVI 74
+C LHP+ + CLDC CSLC +H +++ S+ H +I
Sbjct: 14 RCTLHPNKN---LEFLCLDCKFMPCCSLCTSRKGEHHGHKTDSLESSASNIHSLI 65
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.141 0.468
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,120,514
Number of Sequences: 539616
Number of extensions: 2167158
Number of successful extensions: 6070
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 6048
Number of HSP's gapped (non-prelim): 29
length of query: 153
length of database: 191,569,459
effective HSP length: 107
effective length of query: 46
effective length of database: 133,830,547
effective search space: 6156205162
effective search space used: 6156205162
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (26.2 bits)