Query 031802
Match_columns 153
No_of_seqs 113 out of 172
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 08:31:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031802.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031802hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d8u_A Ubiquitin ligase TRIM63 95.9 0.006 2.1E-07 39.2 3.1 35 25-63 10-46 (64)
2 2yvr_A Transcription intermedi 95.6 0.0039 1.3E-07 38.5 1.4 36 25-64 8-44 (50)
3 3ddt_A E3 ubiquitin-protein li 95.6 0.0055 1.9E-07 37.6 1.9 38 24-65 7-46 (48)
4 1fre_A Nuclear factor XNF7; zi 94.5 0.023 7.7E-07 33.7 2.4 34 25-63 5-40 (42)
5 2did_A Tripartite motif protei 94.0 0.032 1.1E-06 34.7 2.4 36 25-65 10-47 (53)
6 2dja_A Midline-2; tripartite m 93.1 0.027 9.1E-07 38.0 1.0 37 25-65 20-58 (84)
7 2yrg_A Tripartite motif-contai 92.4 0.077 2.6E-06 34.0 2.4 36 25-65 16-53 (59)
8 2csv_A Tripartite motif protei 91.8 0.076 2.6E-06 35.0 1.9 35 25-64 20-55 (72)
9 2jun_A Midline-1; B-BOX, TRIM, 91.6 0.053 1.8E-06 37.3 1.0 36 24-63 60-97 (101)
10 2w0t_A Lethal(3)malignant brai 89.3 0.079 2.7E-06 33.3 0.2 25 112-136 4-34 (43)
11 2egm_A Tripartite motif-contai 88.7 0.05 1.7E-06 34.7 -1.0 35 25-64 20-56 (57)
12 2das_A Zinc finger MYM-type pr 88.6 0.3 1E-05 32.7 2.7 32 107-138 13-54 (62)
13 2l8e_A Polyhomeotic-like prote 69.5 0.67 2.3E-05 29.5 -0.7 24 114-137 18-46 (49)
14 3nis_A E3 ubiquitin-protein li 56.9 7 0.00024 27.0 2.5 32 32-63 15-51 (82)
15 3ny3_A E3 ubiquitin-protein li 56.6 7 0.00024 26.5 2.5 32 32-63 11-47 (75)
16 1lv3_A Hypothetical protein YA 52.1 2.2 7.5E-05 28.9 -0.7 26 114-139 9-39 (68)
17 2hiy_A Hypothetical protein; C 44.4 4.3 0.00015 31.5 -0.2 32 72-104 20-54 (183)
18 2nrr_A Uvrabc system protein C 39.5 5.8 0.0002 30.7 -0.2 27 81-107 21-47 (159)
19 2nrt_A Uvrabc system protein C 32.2 9.2 0.00031 30.9 -0.1 27 81-107 26-52 (220)
20 1tot_A CREB-binding protein; z 30.3 20 0.00067 22.4 1.3 29 38-67 19-49 (52)
21 2fc7_A ZZZ3 protein; structure 27.8 28 0.00094 23.7 1.7 30 39-68 37-76 (82)
22 2yqq_A Zinc finger HIT domain- 27.3 36 0.0012 21.9 2.1 23 114-137 12-40 (56)
23 3c65_A Uvrabc system protein C 26.1 11 0.00036 30.5 -0.7 27 81-107 18-44 (226)
24 3ofg_A BOCA/MESD chaperone for 20.9 54 0.0019 23.4 2.2 16 87-102 49-64 (95)
25 2odd_A Protein CBFA2T1; MYND z 20.5 29 0.00099 21.8 0.6 41 93-141 4-50 (64)
26 3lyw_A YBBR family protein; st 20.2 46 0.0016 23.1 1.7 28 62-89 26-53 (90)
No 1
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=95.87 E-value=0.006 Score=39.20 Aligned_cols=35 Identities=40% Similarity=0.847 Sum_probs=28.0
Q ss_pred cCCCCCCCCCCCCceeccccCCccCCcccc--cCCCCCceE
Q 031802 25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCL--DYHKDHRAI 63 (153)
Q Consensus 25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl--~~H~~Hr~l 63 (153)
.|+.|.+. ..++||.+|.. .+|..|. ..|++|+++
T Consensus 10 ~C~~H~~e---~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~ 46 (64)
T 2d8u_A 10 MCKEHEDE---KINIYCLTCEV-PTCSMCKVFGIHKACEVA 46 (64)
T ss_dssp CCSSCTTC---CCCSEESSSCC-CCCSHHHHSSSTTSSCEE
T ss_pred cCcCcCCC---ccceEcCcCCc-eeCccccCCCcCCCCCee
Confidence 59999542 37799999974 8999996 489999765
No 2
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=95.65 E-value=0.0039 Score=38.50 Aligned_cols=36 Identities=28% Similarity=0.637 Sum_probs=28.1
Q ss_pred cCCCCCCCCCCCCceeccccCCccCCcccc-cCCCCCceEE
Q 031802 25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCL-DYHKDHRAIQ 64 (153)
Q Consensus 25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl-~~H~~Hr~lQ 64 (153)
.|+.|++. ..++||.+|.. .+|..|. ..|++|+++-
T Consensus 8 ~C~~H~~e---~l~lfC~~~~~-~iC~~C~~~~H~~H~~~~ 44 (50)
T 2yvr_A 8 YCNVHKHE---PLVLFCESCDT-LTCRDCQLNAHKDHQYQF 44 (50)
T ss_dssp BCSSSTTC---BCCEEETTTTE-EECHHHHHTTTTTCCEEE
T ss_pred cCcCCCCC---CEEEEeCCCCE-EEecccCCCcCCCCceec
Confidence 48988542 37899999974 8999996 5788997653
No 3
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=95.58 E-value=0.0055 Score=37.64 Aligned_cols=38 Identities=37% Similarity=0.778 Sum_probs=29.5
Q ss_pred ccCCCCCCCCCCCCceeccccCCccCCcccc--cCCCCCceEEE
Q 031802 24 VQCKLHPDSHKSECNMYCLDCMNGAFCSLCL--DYHKDHRAIQI 65 (153)
Q Consensus 24 ~~C~~H~~~~knE~N~FCldC~~~~~C~~Cl--~~H~~Hr~lQI 65 (153)
..|+.|.. ...++||.+|. .++|..|. ..|++|+++.|
T Consensus 7 ~~C~~H~~---e~l~lfC~~d~-~~iC~~C~~~~~H~~H~~~~l 46 (48)
T 3ddt_A 7 PMCKEHED---EKINIYCLTCE-VPTCSMCKVFGIHKACEVAPL 46 (48)
T ss_dssp CBCSSSTT---SBCCEEETTTT-EEECHHHHHHSTTTTSCEEEC
T ss_pred CcCCCCCC---ccccEEcCCCC-eeEcccccCCCcCCCCcEEeC
Confidence 46898863 23679999997 48999996 47999987653
No 4
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=94.48 E-value=0.023 Score=33.71 Aligned_cols=34 Identities=26% Similarity=0.583 Sum_probs=27.3
Q ss_pred cCCCCCCCCCCCCceeccccCCccCCcccc--cCCCCCceE
Q 031802 25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCL--DYHKDHRAI 63 (153)
Q Consensus 25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl--~~H~~Hr~l 63 (153)
.|..|. ....+||.++.. .+|..|. ..|++|+++
T Consensus 5 ~C~~H~----e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~ 40 (42)
T 1fre_A 5 KCSEHD----ERLKLYCKDDGT-LSCVICRDSLKHASHNFL 40 (42)
T ss_dssp CCCSSC----SSCCCCCCSSSS-SSCCTTSSCSSCTTCCCC
T ss_pred cchhhC----CeeeEEeCCCCe-EEeccCCCCCCCCCCcEe
Confidence 588885 247799999974 8999997 479999875
No 5
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=93.96 E-value=0.032 Score=34.73 Aligned_cols=36 Identities=22% Similarity=0.690 Sum_probs=28.6
Q ss_pred cCCCCCCCCCCCCceeccccCCccCCcccc--cCCCCCceEEE
Q 031802 25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCL--DYHKDHRAIQI 65 (153)
Q Consensus 25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl--~~H~~Hr~lQI 65 (153)
.|+.|. ....+||.+|.. .+|..|. ..|++|+++-|
T Consensus 10 ~C~~H~----e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l 47 (53)
T 2did_A 10 LCPQHH----EALSLFCYEDQE-AVCLICAISHTHRAHTVVPL 47 (53)
T ss_dssp BCTTTC----CBCCEEESSSCS-EECHHHHTSSTTTTSCEEEC
T ss_pred cChhhC----CeeeEEeCCCCe-EEeccccCCCCCCCCcEeeH
Confidence 599995 347799999974 8999996 47999987644
No 6
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=93.11 E-value=0.027 Score=37.96 Aligned_cols=37 Identities=32% Similarity=0.775 Sum_probs=28.7
Q ss_pred cCCCCCCCCCCCCceeccccCCccCCcccc--cCCCCCceEEE
Q 031802 25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCL--DYHKDHRAIQI 65 (153)
Q Consensus 25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl--~~H~~Hr~lQI 65 (153)
.|+.|... ..++||.+|.. .+|..|. ..|++|+++-|
T Consensus 20 ~C~~H~~e---~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l 58 (84)
T 2dja_A 20 TCLDHENE---KVNMYCVSDDQ-LICALCKLVGRHRDHQVASL 58 (84)
T ss_dssp CCSSCSSS---CCCEEETTTTE-EECHHHHHTSTTTTCCBCCC
T ss_pred cCcCcCCc---cccEEcCCCCc-eEcccCcCCCCCCCCCccCH
Confidence 59999532 27799999974 8999996 57999986643
No 7
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.36 E-value=0.077 Score=34.02 Aligned_cols=36 Identities=22% Similarity=0.601 Sum_probs=28.9
Q ss_pred cCCCCCCCCCCCCceeccccCCccCCcccc--cCCCCCceEEE
Q 031802 25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCL--DYHKDHRAIQI 65 (153)
Q Consensus 25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl--~~H~~Hr~lQI 65 (153)
.|..|.. ...+||.++.. .+|..|. ..|++|+++-|
T Consensus 16 ~C~~H~e----~L~lfC~~d~~-~iC~~C~~s~eH~~H~~~~l 53 (59)
T 2yrg_A 16 HCARHGE----KLLLFCQEDGK-VICWLCERSQEHRGHHTFPT 53 (59)
T ss_dssp BCTTTCC----BCCEEETTTCS-EECHHHHTSTTTTTCCEEEC
T ss_pred cChhhCc----eeeeecCCCCc-EEecccCCCCcCCCCcEeeH
Confidence 5999963 47799999974 8999997 47999987654
No 8
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=91.78 E-value=0.076 Score=34.96 Aligned_cols=35 Identities=26% Similarity=0.773 Sum_probs=27.9
Q ss_pred cCCCCCCCCCCCCceeccccCCccCCcccc-cCCCCCceEE
Q 031802 25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCL-DYHKDHRAIQ 64 (153)
Q Consensus 25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl-~~H~~Hr~lQ 64 (153)
.|+.|. ...++||.+|.. .+|..|. ..|++|+++-
T Consensus 20 ~C~~H~----e~l~lfC~~d~~-~iC~~C~~~~H~~H~~~~ 55 (72)
T 2csv_A 20 KCPVHG----KTMELFCQTDQT-CICYLCMFQEHKNHSTVT 55 (72)
T ss_dssp BCTTTC----CBCCEEESSSCC-EECHHHHHTTTSSSCEEE
T ss_pred cCcccC----CceEEEeCCCCe-EEccccCCCCCCCCCEec
Confidence 699994 247799999974 8999997 5789997654
No 9
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=91.55 E-value=0.053 Score=37.32 Aligned_cols=36 Identities=36% Similarity=0.805 Sum_probs=28.3
Q ss_pred ccCCCCCCCCCCCCceeccccCCccCCcccc--cCCCCCceE
Q 031802 24 VQCKLHPDSHKSECNMYCLDCMNGAFCSLCL--DYHKDHRAI 63 (153)
Q Consensus 24 ~~C~~H~~~~knE~N~FCldC~~~~~C~~Cl--~~H~~Hr~l 63 (153)
..|+.|.+. ..++||.+|.. .+|..|. ..|++|+++
T Consensus 60 ~~C~~H~~e---~l~~fC~~~~~-~iC~~C~~~~~H~~H~~~ 97 (101)
T 2jun_A 60 LMCLEHEDE---KVNMYCVTDDQ-LICALCKLVGRHRDHQVA 97 (101)
T ss_dssp CCCSSCSSS---CCCEEETTTTE-EECHHHHHHTTTSSSCBC
T ss_pred CcCcCcCCC---cceEECCCCCC-ccchhcCCCCCcCCCCee
Confidence 369988542 37899999974 8999996 589999865
No 10
>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}
Probab=89.27 E-value=0.079 Score=33.26 Aligned_cols=25 Identities=32% Similarity=0.797 Sum_probs=18.1
Q ss_pred CCCCcccccccc-cCC-----CCeeeeccce
Q 031802 112 GVTNTCEVCDRS-LLD-----SFRFCSLGCK 136 (153)
Q Consensus 112 g~~~~C~~C~R~-L~d-----~~~FCSl~CK 136 (153)
+....||.|++. ... +-||||++|-
T Consensus 4 ~~~~~CE~CG~~g~~~~F~~ksKRFCS~~Ca 34 (43)
T 2w0t_A 4 SEPAVCEMCGIVGTREAFFSKTKRFCSVSCS 34 (43)
T ss_dssp CCEEECTTTCCEEETTTSCTTTSSSSSHHHH
T ss_pred CceehhhhhcCcchhhhhccCCcceechhhh
Confidence 345689999984 333 3489999994
No 11
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.68 E-value=0.05 Score=34.75 Aligned_cols=35 Identities=26% Similarity=0.603 Sum_probs=27.9
Q ss_pred cCCCCCCCCCCCCceeccccCCccCCcccc--cCCCCCceEE
Q 031802 25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCL--DYHKDHRAIQ 64 (153)
Q Consensus 25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl--~~H~~Hr~lQ 64 (153)
.|..|. ....+||.++.. .+|..|. ..|++|+++.
T Consensus 20 ~C~~H~----e~L~lfC~~d~~-~iC~~C~~~~eH~~H~~~~ 56 (57)
T 2egm_A 20 ICPKHQ----EALKLFCEVDEE-AICVVCRESRSHKQHSVVP 56 (57)
T ss_dssp BCTTTC----CBCCEEETTTTE-EECHHHHHSHHHHSSCEEC
T ss_pred cChhhC----ceeeEEcCCCCc-EEecccCCCCCCCCCcEec
Confidence 599994 247799999974 8999997 4799998763
No 12
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=88.63 E-value=0.3 Score=32.73 Aligned_cols=32 Identities=28% Similarity=0.560 Sum_probs=25.1
Q ss_pred CCCCCCCCCcccccccccCC----------CCeeeeccceec
Q 031802 107 PRPGKGVTNTCEVCDRSLLD----------SFRFCSLGCKVT 138 (153)
Q Consensus 107 ~r~~kg~~~~C~~C~R~L~d----------~~~FCSl~CKv~ 138 (153)
.++.+....+|+.|.+.|+. +-.|||..|-..
T Consensus 13 q~~~~~~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~ 54 (62)
T 2das_A 13 QQLTKPAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSS 54 (62)
T ss_dssp CCCSSCSSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHH
T ss_pred cCCCCccccChhhccchhhcCceeeeecCchhheechHHHcc
Confidence 55666677899999999984 347999999653
No 13
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=69.53 E-value=0.67 Score=29.47 Aligned_cols=24 Identities=38% Similarity=0.747 Sum_probs=19.3
Q ss_pred CCcccccccccCC-----CCeeeecccee
Q 031802 114 TNTCEVCDRSLLD-----SFRFCSLGCKV 137 (153)
Q Consensus 114 ~~~C~~C~R~L~d-----~~~FCSl~CKv 137 (153)
...|+.|++.+.. +-+|||.+|.-
T Consensus 18 ~~~C~~CG~~i~~~~~~r~krFCS~sCR~ 46 (49)
T 2l8e_A 18 LLKCEYCGKYAPAEQFRGSKRFCSMTCAK 46 (49)
T ss_dssp EEECTTTCCEEEGGGCTTTSSSCSHHHHH
T ss_pred CCcChhccCccccccCCCCCccCCHHHHh
Confidence 3579999999874 35899999964
No 14
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=56.90 E-value=7 Score=27.02 Aligned_cols=32 Identities=22% Similarity=0.453 Sum_probs=24.0
Q ss_pred CCCCCCceeccccCCc---cCCcccc--cCCCCCceE
Q 031802 32 SHKSECNMYCLDCMNG---AFCSLCL--DYHKDHRAI 63 (153)
Q Consensus 32 ~~knE~N~FCldC~~~---~~C~~Cl--~~H~~Hr~l 63 (153)
.+++|--..|.+|... ++|..|- ..|.+|++.
T Consensus 15 f~~ge~~Y~C~~C~~d~tcvlC~~CF~~s~H~gH~~~ 51 (82)
T 3nis_A 15 FKIGEPLYRCHECGCDDTCVLCIHCFNPKDHVNHHVC 51 (82)
T ss_dssp CCTTCEEEEETTTBSSTTCCBCTTTCCGGGGTTSCEE
T ss_pred ccCCCEEEEeeccCCCCCceEchhhCCCCCcCCceEE
Confidence 4678999999999754 4667775 469999754
No 15
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=56.63 E-value=7 Score=26.50 Aligned_cols=32 Identities=31% Similarity=0.628 Sum_probs=23.7
Q ss_pred CCCCCCceeccccCCc---cCCcccc--cCCCCCceE
Q 031802 32 SHKSECNMYCLDCMNG---AFCSLCL--DYHKDHRAI 63 (153)
Q Consensus 32 ~~knE~N~FCldC~~~---~~C~~Cl--~~H~~Hr~l 63 (153)
.+++|-...|.+|... ++|..|- ..|.+|++.
T Consensus 11 f~~ge~~Y~C~~C~~d~tc~lC~~CF~~~~H~gH~~~ 47 (75)
T 3ny3_A 11 FKVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYR 47 (75)
T ss_dssp CCTTCEEEEETTTBSSTTCCBCHHHHHTSGGGGSCEE
T ss_pred ccCCCEEEECccCCCCCCeeEChHHCCCCCcCCceEE
Confidence 4678999999999754 4666664 469999753
No 16
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=52.14 E-value=2.2 Score=28.92 Aligned_cols=26 Identities=31% Similarity=0.846 Sum_probs=20.4
Q ss_pred CCcccccccccC----CCC-eeeeccceece
Q 031802 114 TNTCEVCDRSLL----DSF-RFCSLGCKVTL 139 (153)
Q Consensus 114 ~~~C~~C~R~L~----d~~-~FCSl~CKv~~ 139 (153)
+..|.+|+|... .++ .|||-.||..+
T Consensus 9 ~~~CP~Cgkp~~W~~~~~~rPFCSeRCr~iD 39 (68)
T 1lv3_A 9 TVNCPTCGKTVVWGEISPFRPFCSKRCQLID 39 (68)
T ss_dssp EEECTTTCCEEECSSSSSCCSSSSHHHHHHH
T ss_pred cCcCCCCCCcccccccCCCCcccCHHHHhhh
Confidence 357999999985 244 79999999854
No 17
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=44.43 E-value=4.3 Score=31.48 Aligned_cols=32 Identities=25% Similarity=0.520 Sum_probs=23.5
Q ss_pred ceeEecccccc---eeccceeeEEECCeEEEEeeCC
Q 031802 72 DVIRVSEIQKV---LDISGVQTYVINSARVVFLNER 104 (153)
Q Consensus 72 dVVrv~diqkl---~D~S~IQtYviNs~kVVfLn~R 104 (153)
+-|...|+.+. +-..+|+|| |||+-|||=-..
T Consensus 20 nkv~MadLr~~l~~lGf~~V~Ty-I~SGNvvF~s~~ 54 (183)
T 2hiy_A 20 NKVVMAELRQELTNLGLEKVESY-INSGNIFFTSID 54 (183)
T ss_dssp CCCCHHHHHHHHHHHTCEEEEEE-TTTTEEEEEECS
T ss_pred CcccHHHHHHHHHHcCCccceEE-EecCCEEEecCC
Confidence 34556666654 567899999 899999996543
No 18
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=39.51 E-value=5.8 Score=30.71 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=20.9
Q ss_pred cceeccceeeEEECCeEEEEeeCCCCC
Q 031802 81 KVLDISGVQTYVINSARVVFLNERPQP 107 (153)
Q Consensus 81 kl~D~S~IQtYviNs~kVVfLn~RPq~ 107 (153)
+.+|+|.||.--.-++-|||-+.+|..
T Consensus 21 E~fDiSh~~G~~~VasmVVf~~g~p~K 47 (159)
T 2nrr_A 21 EGIDISHLQGKYTVASLVVFEDGFPKK 47 (159)
T ss_dssp EEEEEECC---CCEEEEEEEETTEECG
T ss_pred EEEECCccCCccceEEEEEEeCCccCh
Confidence 359999999988889999999998864
No 19
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=32.25 E-value=9.2 Score=30.87 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=23.6
Q ss_pred cceeccceeeEEECCeEEEEeeCCCCC
Q 031802 81 KVLDISGVQTYVINSARVVFLNERPQP 107 (153)
Q Consensus 81 kl~D~S~IQtYviNs~kVVfLn~RPq~ 107 (153)
+.+|+|.||.--.-++-|||-+.+|..
T Consensus 26 E~fDiSh~~G~~~V~smVvf~~g~p~k 52 (220)
T 2nrt_A 26 EGIDISHLQGKYTVASLVVFEDGFPKK 52 (220)
T ss_dssp EEEEEEEETTTEEEEEEEEEETTEECG
T ss_pred EEEECCccCCccceEEEEEEeCCccCh
Confidence 359999999888889999999998864
No 20
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=30.33 E-value=20 Score=22.41 Aligned_cols=29 Identities=21% Similarity=0.528 Sum_probs=22.1
Q ss_pred ceeccccCCccCCccccc--CCCCCceEEEEe
Q 031802 38 NMYCLDCMNGAFCSLCLD--YHKDHRAIQIRR 67 (153)
Q Consensus 38 N~FCldC~~~~~C~~Cl~--~H~~Hr~lQIRR 67 (153)
-+-|..|.+--+|..|.. .| .|+.++|..
T Consensus 19 R~~C~~C~dyDLC~~C~~~~~H-~H~m~~~~~ 49 (52)
T 1tot_A 19 RWHCTVCEDYDLCINCYNTKSH-THKMVKWGL 49 (52)
T ss_dssp EEEESSSSSCEECHHHHHHHCC-CSSEEEECS
T ss_pred eEEcCCCCCchhHHHHHhCCCC-CCceEEecC
Confidence 377999987679999963 45 798887653
No 21
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=27.77 E-value=28 Score=23.68 Aligned_cols=30 Identities=43% Similarity=0.773 Sum_probs=21.8
Q ss_pred eeccccCC---ccCCcccc------cCC-CCCceEEEEec
Q 031802 39 MYCLDCMN---GAFCSLCL------DYH-KDHRAIQIRRS 68 (153)
Q Consensus 39 ~FCldC~~---~~~C~~Cl------~~H-~~Hr~lQIRR~ 68 (153)
+-|++|.+ --||..|- ..| ..|+...|.++
T Consensus 37 ykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~~ 76 (82)
T 2fc7_A 37 WHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRS 76 (82)
T ss_dssp EEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSC
T ss_pred EECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeCC
Confidence 66889976 56999995 245 57888877654
No 22
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.34 E-value=36 Score=21.92 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=16.2
Q ss_pred CCcccccccccCC------CCeeeecccee
Q 031802 114 TNTCEVCDRSLLD------SFRFCSLGCKV 137 (153)
Q Consensus 114 ~~~C~~C~R~L~d------~~~FCSl~CKv 137 (153)
...|.+|+. ..- ..+||||.|--
T Consensus 12 ~~~C~vC~~-~~kY~CPrC~~~yCSl~C~k 40 (56)
T 2yqq_A 12 TVVCVICLE-KPKYRCPACRVPYCSVVCFR 40 (56)
T ss_dssp CCCCTTTCS-CCSEECTTTCCEESSHHHHH
T ss_pred CCccCcCcC-CCeeeCCCCCCCeeCHHHHH
Confidence 346888988 321 36999999953
No 23
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=26.15 E-value=11 Score=30.54 Aligned_cols=27 Identities=33% Similarity=0.363 Sum_probs=23.5
Q ss_pred cceeccceeeEEECCeEEEEeeCCCCC
Q 031802 81 KVLDISGVQTYVINSARVVFLNERPQP 107 (153)
Q Consensus 81 kl~D~S~IQtYviNs~kVVfLn~RPq~ 107 (153)
+.+|+|.||.--.-++-|||-+.+|..
T Consensus 18 E~fDiSh~~G~~~V~smVvf~~g~p~k 44 (226)
T 3c65_A 18 EAFDNSNIYGADPVSALVVFLDGKPAK 44 (226)
T ss_dssp EEEEEEESSSSSCEEEEEEEETTEECG
T ss_pred EEEECCccCCcCceEEEEEEeCCccCh
Confidence 359999999888889999999998864
No 24
>3ofg_A BOCA/MESD chaperone for YWTD beta-propeller-EGF P; molecular chaperone, protein folding, YWTD propeller, LDLR; HET: MSE; 1.37A {Caenorhabditis elegans}
Probab=20.93 E-value=54 Score=23.41 Aligned_cols=16 Identities=31% Similarity=0.711 Sum_probs=14.3
Q ss_pred ceeeEEECCeEEEEee
Q 031802 87 GVQTYVINSARVVFLN 102 (153)
Q Consensus 87 ~IQtYviNs~kVVfLn 102 (153)
.+|.|+|...+++|+=
T Consensus 49 ~~qrf~I~d~raiFmf 64 (95)
T 3ofg_A 49 DLQVFVIDDNRAIFMF 64 (95)
T ss_dssp CEEEEEEETTEEEEEE
T ss_pred eEEEEEecCCEEEEEE
Confidence 4799999999999985
No 25
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}
Probab=20.47 E-value=29 Score=21.83 Aligned_cols=41 Identities=15% Similarity=0.306 Sum_probs=18.6
Q ss_pred ECCeEEEEeeCCCCCCCCCCCCCcccccccccCC------CCeeeeccceeceee
Q 031802 93 INSARVVFLNERPQPRPGKGVTNTCEVCDRSLLD------SFRFCSLGCKVTLIT 141 (153)
Q Consensus 93 iNs~kVVfLn~RPq~r~~kg~~~~C~~C~R~L~d------~~~FCSl~CKv~~~~ 141 (153)
|+-+.|| |.+.|. ...|..|++.-.- ...|||-.|...+-.
T Consensus 4 ~~~G~~i-l~~~~~-------~~~C~~C~~~~~~~Cs~C~~~~YCs~~CQ~~~W~ 50 (64)
T 2odd_A 4 YFQGENL-YFQGDS-------SESCWNCGRKASETCSGCNTARYCGSFCQHKDWE 50 (64)
T ss_dssp ------------CC-------SSSCTTTSSCCCEEETTTSCCEESSHHHHHHHHH
T ss_pred CCCCCEE-eeCCCC-------CCcCccccCCCcccCCCCCChhhCCHHHHHHHHH
Confidence 3444555 455552 3467777763221 357999999876544
No 26
>3lyw_A YBBR family protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.90A {Desulfitobacterium hafniense} PDB: 2kpu_A 2l5n_A
Probab=20.24 E-value=46 Score=23.11 Aligned_cols=28 Identities=25% Similarity=0.583 Sum_probs=24.0
Q ss_pred eEEEEeccccceeEecccccceecccee
Q 031802 62 AIQIRRSSYHDVIRVSEIQKVLDISGVQ 89 (153)
Q Consensus 62 ~lQIRR~sY~dVVrv~diqkl~D~S~IQ 89 (153)
.+.||=..++..++.+||..++|.|++.
T Consensus 26 tV~V~v~G~r~~~~~~di~A~VDLsg~~ 53 (90)
T 3lyw_A 26 SVRVKTEGYNPSINVNELFAYVDLSGSE 53 (90)
T ss_dssp EEEEEEEECCTTCCSTTCEEEEECTTCC
T ss_pred EEEEEEEecCcCCChHHEEEEEECcCCC
Confidence 6777777777889999999999999985
Done!