Query 031803
Match_columns 152
No_of_seqs 103 out of 1021
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 08:32:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031803.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031803hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o58_A L10A, 60S ribosomal pro 100.0 3E-45 1E-49 293.3 -8.3 147 1-147 1-147 (217)
2 3iz5_A 60S ribosomal protein L 100.0 1.7E-45 5.9E-50 294.5 -13.1 145 1-146 1-145 (216)
3 1i2a_A 50S ribosomal protein L 100.0 7.5E-41 2.6E-45 268.2 11.5 140 4-146 1-141 (219)
4 1mzp_A 50S ribosomal protein L 100.0 1.2E-40 4E-45 266.8 10.8 142 4-146 3-146 (217)
5 2zkr_5 60S ribosomal protein L 100.0 4.9E-41 1.7E-45 268.2 8.5 140 4-146 1-141 (212)
6 3j21_A 50S ribosomal protein L 100.0 8.4E-42 2.9E-46 273.3 0.7 140 4-146 3-144 (216)
7 3u42_A 50S ribosomal protein L 100.0 5.4E-38 1.8E-42 253.2 7.0 135 2-147 13-153 (229)
8 2wwq_5 50S ribosomal protein L 100.0 1.5E-36 5.2E-41 245.4 10.5 125 13-146 23-151 (234)
9 3qoy_A 50S ribosomal protein L 100.0 1.3E-36 4.5E-41 246.8 8.5 129 8-146 22-155 (242)
10 3bbo_D Ribosomal protein L1; l 100.0 1.5E-35 5E-40 250.3 3.9 135 3-146 128-265 (352)
11 2ftc_A Mitochondrial ribosomal 99.9 2E-25 6.8E-30 175.2 10.6 104 31-146 2-110 (189)
12 2ov7_A 50S ribosomal protein L 99.2 4.4E-12 1.5E-16 94.8 4.0 55 2-58 12-67 (137)
13 3qoy_A 50S ribosomal protein L 95.4 0.0045 1.6E-07 49.8 1.4 24 117-140 128-152 (242)
14 2wwq_5 50S ribosomal protein L 94.8 0.0094 3.2E-07 47.6 1.5 24 117-140 124-148 (234)
15 3bbo_D Ribosomal protein L1; l 94.0 0.028 9.5E-07 47.5 2.7 90 27-140 168-262 (352)
16 3j21_A 50S ribosomal protein L 91.6 0.076 2.6E-06 41.7 2.0 23 117-140 117-141 (216)
17 1i2a_A 50S ribosomal protein L 85.8 0.17 5.9E-06 39.7 0.3 21 116-136 114-136 (219)
18 1mzp_A 50S ribosomal protein L 85.3 0.18 6.3E-06 39.5 0.3 21 116-136 119-141 (217)
19 2zkr_5 60S ribosomal protein L 84.0 0.17 5.9E-06 39.5 -0.4 21 116-136 114-136 (212)
20 3u42_A 50S ribosomal protein L 57.5 0.7 2.4E-05 36.5 -2.9 15 124-138 128-142 (229)
21 3nbm_A PTS system, lactose-spe 51.9 8.5 0.00029 26.6 2.3 48 60-117 4-64 (108)
22 2l2q_A PTS system, cellobiose- 50.3 17 0.00059 24.5 3.7 47 62-118 4-63 (109)
23 2k6g_A Replication factor C su 49.0 16 0.00055 25.2 3.4 38 58-95 66-106 (109)
24 1e2b_A Enzyme IIB-cellobiose; 48.1 17 0.00057 24.7 3.3 48 63-120 4-64 (106)
25 2ov6_A V-type ATP synthase sub 45.7 33 0.0011 23.1 4.5 53 63-121 1-59 (101)
26 1nsj_A PRAI, phosphoribosyl an 44.4 6.5 0.00022 30.1 0.8 26 63-88 4-29 (205)
27 1v5x_A PRA isomerase, phosphor 44.2 6.7 0.00023 30.0 0.9 26 63-88 3-28 (203)
28 3czc_A RMPB; alpha/beta sandwi 43.2 22 0.00075 24.1 3.4 48 62-119 18-80 (110)
29 1tvm_A PTS system, galactitol- 42.9 9.3 0.00032 26.2 1.4 47 61-117 20-80 (113)
30 2qai_A V-type ATP synthase sub 38.4 55 0.0019 22.6 4.8 53 63-121 1-63 (111)
31 4aaj_A N-(5'-phosphoribosyl)an 36.6 10 0.00036 29.5 0.9 32 55-87 15-46 (228)
32 2d00_A V-type ATP synthase sub 35.8 49 0.0017 22.6 4.2 54 62-121 3-61 (109)
33 2cok_A Poly [ADP-ribose] polym 35.0 27 0.00093 24.2 2.8 37 60-96 45-86 (113)
34 3aon_B V-type sodium ATPase su 34.6 45 0.0015 23.1 3.9 56 63-124 3-62 (115)
35 1l7b_A DNA ligase; BRCT, autos 33.3 26 0.0009 23.3 2.4 35 61-95 43-79 (92)
36 2ebu_A Replication factor C su 31.6 48 0.0016 23.0 3.6 34 61-94 59-95 (112)
37 3iz5_A 60S ribosomal protein L 29.1 21 0.00073 27.4 1.5 19 118-136 121-140 (216)
38 1pii_A N-(5'phosphoribosyl)ant 25.8 21 0.00072 30.7 1.0 28 61-88 255-282 (452)
39 3nx2_A Ferulic acid decarboxyl 23.0 29 0.001 26.1 1.2 38 46-83 86-126 (168)
40 3jx9_A Putative phosphoheptose 22.7 63 0.0021 23.9 3.0 35 56-90 72-113 (170)
41 2p8g_A PAD, phenolic acid deca 22.6 27 0.00092 26.1 0.9 37 46-83 79-119 (162)
42 2w2a_A P-coumaric acid decarbo 21.9 29 0.00099 26.7 1.0 47 30-83 91-141 (194)
43 3l7p_A Putative nitrogen regul 20.3 1.3E+02 0.0046 20.5 4.2 66 5-79 11-78 (115)
No 1
>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A 1s1i_A 3izs_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B 3jyw_A
Probab=100.00 E-value=3e-45 Score=293.30 Aligned_cols=147 Identities=61% Similarity=0.946 Sum_probs=136.5
Q ss_pred CCcccHHHHHHHHHHHHHhhhhhccCCCceeEEEEEEecccCCCCCCceeeeEEccCCCCCCcEEEEecCchhHHHHHHc
Q 031803 1 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKI 80 (152)
Q Consensus 1 ~~~~~~~~l~~av~~~~~~~~~~~~~kf~esvel~i~lk~~d~k~~~~i~g~i~LPh~~~k~~kI~Vf~~~~~~~~Ak~a 80 (152)
||++++++|++||++++++.+..++++|+||||++|+|||+|+++++++||+|.|||+++++.+|||||+++.+++|+++
T Consensus 1 ~sk~~~~~~~~av~~~l~~~~~~~~~kf~etVel~i~Lk~idp~kd~~~rg~v~LPh~~~k~~~V~Vf~~~~~~~~Ak~a 80 (217)
T 3o58_A 1 MSKITSSQVREHVKELLKYSNETKKRNFLETVELQVGLKNYDPQRDKRFSGSLKLPNCPRPNMSICIFGDAFDVDRAKSC 80 (217)
T ss_dssp ---CCSTTHHHHTTSSSSCCSSSSCCSSCCCCCCCCCSCCSCSSSSSCCSCCCSCCCCCSSCCCCCCCSSTTSSGGGTTT
T ss_pred CCccCHHHHHHHHHHHHHhcccccccCCCccEEEEEEecccCCCCCCcCCeEEECCCCCCCCcEEEEEcCcHhHHHHHHc
Confidence 89999999999999998766433778999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCHHHHHHHhhchHHHHHhhhcccEEEEchhhHhhhhhhhcCCCCCCCCCCCCCCCCCCcccc
Q 031803 81 GLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKKVPYPCYSPRIPGV 147 (152)
Q Consensus 81 Ga~~vg~~eL~k~~k~~~~~kkl~~~fd~~lAt~~im~~l~riLGpgL~p~~K~pt~v~~~~~~~~~ 147 (152)
||++||++||++.+++++.+++|+.+||+|||||+||++|+|+|||+|||++|||+|++.++|+.+.
T Consensus 81 Ga~~vg~~~L~~~~k~~k~~~~l~~~fD~~iA~~~im~~l~riLG~~l~p~gk~P~p~~vt~dv~~~ 147 (217)
T 3o58_A 81 GVDAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVSHNDDLYGK 147 (217)
T ss_dssp TCCCCCSTTTTTTSCSSSHHHHHHCSSSCCCCCCCCSSCCSSSSSSTTHHHHCSSCCSCTTTCSSSG
T ss_pred CCCEeCHHHHHHHhhchhHhhhhhhhCCEEEECHHHHHHHHHHhhhhhcccCCcCCCcCCchhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998743
No 2
>3iz5_A 60S ribosomal protein L1 (L1P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_A
Probab=100.00 E-value=1.7e-45 Score=294.50 Aligned_cols=145 Identities=77% Similarity=1.151 Sum_probs=136.9
Q ss_pred CCcccHHHHHHHHHHHHHhhhhhccCCCceeEEEEEEecccCCCCCCceeeeEEccCCCCCCcEEEEecCchhHHHHHHc
Q 031803 1 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKI 80 (152)
Q Consensus 1 ~~~~~~~~l~~av~~~~~~~~~~~~~kf~esvel~i~lk~~d~k~~~~i~g~i~LPh~~~k~~kI~Vf~~~~~~~~Ak~a 80 (152)
|||++.++|.+||+.+++..++ ++++|+||||++|+|||||+++++++||+|.|||+++++.+|||||+++++++|+++
T Consensus 1 ~~k~~~~~l~eav~~~~~~~~~-~~~kF~etvel~i~Lk~idp~kd~~~rg~v~LPh~~~k~~kV~Vf~~~~~~~~A~~a 79 (216)
T 3iz5_A 1 MSKLQSDAVKDAITQIVGEARE-KKRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMRVCMLGDAQHVDQAEKM 79 (216)
T ss_dssp CTGGGSCSSCEECTTTSSSSTT-HHHHCCCSSCCEEEEEEECCCCSSSTTCCEECCBCSSCCCCCCCEEEECCTHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhccc-cccCCCccEEEEEEecccCcccccccceeecCCCCCCCCcEEEEEcChHhHHHHHhc
Confidence 8999999999999998876643 578999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCHHHHHHHhhchHHHHHhhhcccEEEEchhhHhhhhhhhcCCCCCCCCCCCCCCCCCCccc
Q 031803 81 GLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKKVPYPCYSPRIPG 146 (152)
Q Consensus 81 Ga~~vg~~eL~k~~k~~~~~kkl~~~fd~~lAt~~im~~l~riLGpgL~p~~K~pt~v~~~~~~~~ 146 (152)
||++||++||++.+++++.+|||+.+||+|||||++|++|+|+|||+|||++|||+|++.++|+.+
T Consensus 80 Ga~~vg~~~L~~~~k~~~~~rkl~~~fD~~lA~~~i~~~l~riLG~~l~p~gk~P~p~~~t~dv~~ 145 (216)
T 3iz5_A 80 GLDYMDVESLKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLGPGLNKAGKFPTLVSHQESLEA 145 (216)
T ss_dssp HHTCSEEECGGGHHHHHHTCCCCSEEEECTTTHHHHHHHHHHHHTTTCSCCTTTTCBCSCHHHHHH
T ss_pred cCCEeCHHHHHHHhhchHHHHHHHhhCCEEEECHHHHHHHHHHhcccccccCCcCCCcCCcccHHH
Confidence 999999999999999998889999999999999999999999999999999999999998877763
No 3
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translation repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A
Probab=100.00 E-value=7.5e-41 Score=268.22 Aligned_cols=140 Identities=30% Similarity=0.429 Sum_probs=130.3
Q ss_pred ccHHHHHHHHHHHHHhhhhhccCCCceeEEEEEEecccCCCCC-CceeeeEEccCCCCCCcEEEEecCchhHHHHHHcCC
Q 031803 4 LQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKD-KRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGL 82 (152)
Q Consensus 4 ~~~~~l~~av~~~~~~~~~~~~~kf~esvel~i~lk~~d~k~~-~~i~g~i~LPh~~~k~~kI~Vf~~~~~~~~Ak~aGa 82 (152)
|+++.|.+||++++++. +.++|+||||++|+|||+|++++ +++||+|.|||+++++.+|||||+++++++|+++||
T Consensus 1 ~~~~~l~eAv~~llk~~---~~~kf~etVel~i~LK~~dp~~d~q~vrg~v~LPh~~~k~~~V~Vf~~~~~~~~A~~aGa 77 (219)
T 1i2a_A 1 MDREALLQAVKEARELA---KPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEAKIAVIGTGDLAKQAEELGL 77 (219)
T ss_dssp CCHHHHHHHHHHHHHHS---CCCSSCCEEEEEEEESSCCTTSGGGCCEEEEECTTCCSSCCCEEEECCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhc---ccCCCCceEEEEEEecccCCcccccccceEEecCCCCCCCcEEEEEcCchhHHHHHHCCC
Confidence 45889999999876654 78899999999999999999988 799999999999999999999999999999999999
Q ss_pred CccCHHHHHHHhhchHHHHHhhhcccEEEEchhhHhhhhhhhcCCCCCCCCCCCCCCCCCCccc
Q 031803 83 DYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKKVPYPCYSPRIPG 146 (152)
Q Consensus 83 ~~vg~~eL~k~~k~~~~~kkl~~~fd~~lAt~~im~~l~riLGpgL~p~~K~pt~v~~~~~~~~ 146 (152)
++||++||.++.++++.+|+|+.+||+|||||+||++|+|+||++|+|+++||+|+++++|+.+
T Consensus 78 ~~vg~~~L~ki~~~kk~~r~l~~~fD~~lA~~~~m~~l~k~LGk~LgprgkmP~pk~gt~dv~~ 141 (219)
T 1i2a_A 78 TVIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVILGPRGKMPKPVPANANIKP 141 (219)
T ss_dssp EEECHHHHHHHHHCHHHHHHHHHHCSEEEEEGGGHHHHHHHTHHHHGGGTCCCEEECTTCCCHH
T ss_pred CEEcHHHHHHHHhhhhhhhhchhhCCEEEECHHHHHHHHHHHhhhhcccCCCCcccCCCccHHH
Confidence 9999999977777888999999999999999999999999999999999999999999888874
No 4
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z
Probab=100.00 E-value=1.2e-40 Score=266.77 Aligned_cols=142 Identities=28% Similarity=0.383 Sum_probs=132.9
Q ss_pred ccHHHHHHHHHHHHHhhhhhccCCCceeEEEEEEecccCCCCC-CceeeeEEccCCCCCCcEEEEecCchhHHHHHHcCC
Q 031803 4 LQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKD-KRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGL 82 (152)
Q Consensus 4 ~~~~~l~~av~~~~~~~~~~~~~kf~esvel~i~lk~~d~k~~-~~i~g~i~LPh~~~k~~kI~Vf~~~~~~~~Ak~aGa 82 (152)
+++++|.+||++++++. ..+.++|+||||++|+|||+|++++ +++||+|.|||+++++.+|||||+++++++|+++||
T Consensus 3 v~~~~l~~Av~~ll~~~-~~~~~kf~etvel~i~LK~~dp~~d~q~~rg~v~LPh~~~k~~~V~Vf~~~~~~~~A~~aGa 81 (217)
T 1mzp_A 3 ADKESLIEALKLALSTE-YNVKRNFTQSVEIILTFKGIDMKKGDLKLREIVPLPKQPSKAKRVLVVPSSEQLEYAKKASP 81 (217)
T ss_dssp CCHHHHHHHHHHHHSTT-TCCCCSSCCEEEEEEEESSCCGGGTTTCCEEEEECSSCCSSCCCEEEECCHHHHHHHHHTCC
T ss_pred cCHHHHHHHHHHHHhhc-cccccCCCccEEEEEEecCCCCcccccccceeecCCCCCCCCcEEEEEcCchhHHHHHhcCC
Confidence 68999999999988874 3477899999999999999999988 799999999999999999999999999999999999
Q ss_pred C-ccCHHHHHHHhhchHHHHHhhhcccEEEEchhhHhhhhhhhcCCCCCCCCCCCCCCCCCCccc
Q 031803 83 D-YMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKKVPYPCYSPRIPG 146 (152)
Q Consensus 83 ~-~vg~~eL~k~~k~~~~~kkl~~~fd~~lAt~~im~~l~riLGpgL~p~~K~pt~v~~~~~~~~ 146 (152)
+ ++|++||.++.++++++|+++.+||+|||||+||++|+|+||+.|+|+++||+|+++++|+.+
T Consensus 82 d~~vg~~~L~ki~~~kk~~k~~~~~fD~~lA~~~~m~~l~~~LG~~LgprgkmP~p~~gt~dv~~ 146 (217)
T 1mzp_A 82 KVVITREELQKLQGQKRPVKKLARQNEWFLINQESMALAGRILGPALGPRGKFPTPLPNTADISE 146 (217)
T ss_dssp SEECCHHHHHHHTTCHHHHHHHHHSCSEEEECGGGHHHHHHHTHHHHGGGTCCEEECCSSSCCHH
T ss_pred CeeeCHHHHHHHHhhHHhhhhchhhCCEEEECHHHHHHHHHHHhhhccccCCCCcccCCCccHHH
Confidence 8 999999977777889999999999999999999999999999999999999999999888764
No 5
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=4.9e-41 Score=268.17 Aligned_cols=140 Identities=24% Similarity=0.378 Sum_probs=129.5
Q ss_pred ccHHHHHHHHHHHHHhhhhhccCCCceeEEEEEEecccCCC-CCCceeeeEEccCCCCCCcEEEEecCchhHHHHHHcCC
Q 031803 4 LQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQ-KDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGL 82 (152)
Q Consensus 4 ~~~~~l~~av~~~~~~~~~~~~~kf~esvel~i~lk~~d~k-~~~~i~g~i~LPh~~~k~~kI~Vf~~~~~~~~Ak~aGa 82 (152)
||+++|.+||++++++. +.++|+||||++|+|||||++ +++++||+|.|||++++..+|||||+++++++|+++||
T Consensus 1 ~~~~~l~eAv~~llk~~---~~~kf~etvel~i~Lk~~dp~k~d~~~rg~v~LPh~~~k~~~V~Vf~~~~~~~~A~~aGa 77 (212)
T 2zkr_5 1 MADQEIENAVSRALEDA---PERNFRETVDLAVNLRDLDLNDPSNRVDESVVLPAGTGQETTIVVFAEGETALRAEEVAD 77 (212)
T ss_dssp -CCTTHHHHHHHHHHTS---CCCSSCCEEEEEEEESSCCTTTTTTCCCCEEECSSCCSSCCCEEEECCHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHhc---ccCCCCceEEEEEEeCCCCCCcccccCceEEECCCCCCCCcEEEEEcCchhHHHHHhcCC
Confidence 57889999999866654 788999999999999999999 59999999999999999999999999999999999999
Q ss_pred CccCHHHHHHHhhchHHHHHhhhcccEEEEchhhHhhhhhhhcCCCCCCCCCCCCCCCCCCccc
Q 031803 83 DYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKKVPYPCYSPRIPG 146 (152)
Q Consensus 83 ~~vg~~eL~k~~k~~~~~kkl~~~fd~~lAt~~im~~l~riLGpgL~p~~K~pt~v~~~~~~~~ 146 (152)
+++|++||.++.++++.+|+++.+||+|||||+||++|+|+||+.|+|+++||+|+++++|+.+
T Consensus 78 ~~vg~~~L~ki~~~kk~~k~~~~~fD~~lA~~~~m~~l~~~LGk~LgprgkmP~pk~gt~dv~~ 141 (212)
T 2zkr_5 78 DVLDEDELEELGGDDDAAKDLADDTDFFIAEKGLMQDIGRYLGTVLGPRGKMPEPLDPDDDVVE 141 (212)
T ss_dssp CCCCHHHHHHHTTCHHHHHHHHHHCSEEEECTTTHHHHHHHTHHHHHHHTCCEEECCSSSCCHH
T ss_pred CEeCHHHHHHHHhhHHhhhcccccCCEEEECHHHHHHHHHHHhhhccccCCcCcccCCCcCHHH
Confidence 9999999966666899999999999999999999999999999999999999999999888864
No 6
>3j21_A 50S ribosomal protein L1P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=8.4e-42 Score=273.27 Aligned_cols=140 Identities=29% Similarity=0.449 Sum_probs=128.0
Q ss_pred ccHHHHHHHHHHHHHhhhhhccCCCceeEEEEEEecccCCCC-CCceeeeEEccCCCCCCcEEEEecCchhHHHHHHcCC
Q 031803 4 LQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGL 82 (152)
Q Consensus 4 ~~~~~l~~av~~~~~~~~~~~~~kf~esvel~i~lk~~d~k~-~~~i~g~i~LPh~~~k~~kI~Vf~~~~~~~~Ak~aGa 82 (152)
+++++|.+||+.+++.. +.++|+||||++|+|+|||+++ +++|||+|.|||+++++.+|||||+++++++|+++||
T Consensus 3 ~~~~~~~eav~~~~~~~---~~~kF~etvel~i~L~~~dp~k~d~~~rg~v~LPh~~~k~~kV~Vf~~~~~~~~Ak~aGa 79 (216)
T 3j21_A 3 FDRQKIVKAVKEAKARA---KPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARKLGL 79 (216)
T ss_dssp SSCSSCCCCTTTTCCCC---CCSSSCCEEEEEEEESSCCSSSGGGSCCEEEECSSCCSSCCCEEECCCSHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhC---cccCCCceEEEEEEECCCCCCCcCceeeEEEeCCCCCCCCcEEEEECCHHHHHHHHhcCC
Confidence 46677777777765422 3689999999999998899996 9999999999999999999999999999999999999
Q ss_pred CccCHHHHHHHhhchHHHHHhhhcccEEEEchhhHhhhhhhhcCCCCCCCCCCCCCCCC-CCccc
Q 031803 83 DYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKKVPYPCYS-PRIPG 146 (152)
Q Consensus 83 ~~vg~~eL~k~~k~~~~~kkl~~~fd~~lAt~~im~~l~riLGpgL~p~~K~pt~v~~~-~~~~~ 146 (152)
+++|+++|.++.++++++|+++.+||+|||||+||++|+|+||+.|+|++|||+|++++ +|+.+
T Consensus 80 d~vg~e~L~k~~k~~k~~kkl~~~fD~~lA~~~im~~l~k~LGk~LgprgkmP~pk~gtv~dv~~ 144 (216)
T 3j21_A 80 DVISSAELEEIASSPRQARKLAKKYDFFIAEAPLMPKIGRYLGRYLGPRNKMPVVVPPTLTDLTP 144 (216)
T ss_dssp CCCCTTHHHHHHHCCCSSSCCSSSCSEEEBCGGGHHHHHHHHHHHHTTSSSSCCTTTTCBCSHHH
T ss_pred CccCHHHHHHHhcCHHHHhhhhhhCCEEEeCHHHHHHHHHHHHHHhccCCccCCCcCCcHHHHHH
Confidence 99999999999999988999999999999999999999999999999999999999998 88763
No 7
>3u42_A 50S ribosomal protein L1; rossmann fold, rRNA binding, RNA binding; 1.35A {Thermus thermophilus} PDB: 3u56_A 3u4m_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1vsa_A 4f9t_A* 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 3umy_A 2hw8_A 2j01_C 2j03_C 2om7_K* ...
Probab=100.00 E-value=5.4e-38 Score=253.23 Aligned_cols=135 Identities=26% Similarity=0.429 Sum_probs=116.8
Q ss_pred CcccHHHHHHHHHHHHHhhhhhccCCCceeEEEEEEecccCCC-CCCceeeeEEccCCCCCCcEEEEecCchhHHHHHHc
Q 031803 2 SKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQ-KDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKI 80 (152)
Q Consensus 2 ~~~~~~~l~~av~~~~~~~~~~~~~kf~esvel~i~lk~~d~k-~~~~i~g~i~LPh~~~k~~kI~Vf~~~~~~~~Ak~a 80 (152)
+++|+..+|+ +++|++.+++.+.++|+||||++|+| |+|++ ++++|||+|.|||++|++.||||||+++++++|+++
T Consensus 13 ~~~d~~k~y~-~~eAi~~lk~~~~~kF~etvel~i~L-~vd~~k~dq~vrg~v~LP~g~gk~~kV~Vfa~~~~~~eAk~a 90 (229)
T 3u42_A 13 EKVDPNKIYT-IDEAAHLVKELATAKFDETVEVHAKL-GIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEA 90 (229)
T ss_dssp GSSCTTCCBC-HHHHHHHHHHHCCSSSCCEEEEEEEE-SSCTTCGGGCCEEEEECSSSCSTTSCEEEECCTHHHHHHHHT
T ss_pred hccCccCCCC-HHHHHHHHHHhCCCCCCccEEEEEEE-ccCCCCCCCceeEEEECCCCCCCceEEEEecChHhHHHHHhc
Confidence 3566666664 77777778888899999999999999 89999 499999999999999999999999999999999999
Q ss_pred CCCccCHHHHHHHhhchHHHHHhhhcccEEEEchhhHhhh----hhhhcC-CCCCCCCCCCCCCCCCCcccc
Q 031803 81 GLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQI----PRLLGP-GLNKAGKKVPYPCYSPRIPGV 147 (152)
Q Consensus 81 Ga~~vg~~eL~k~~k~~~~~kkl~~~fd~~lAt~~im~~l----~riLGp-gL~p~~K~pt~v~~~~~~~~~ 147 (152)
||++||++||++.++++. .+||+|||||++|++| ||+||| ||||++|.||+ ++|+.+.
T Consensus 91 GAd~vG~~dLi~kIk~g~------~~fD~~iAtpd~m~~vg~~LG~iLGPrGlMPnpk~GTv---t~dv~~~ 153 (229)
T 3u42_A 91 GADYVGGEEIIQKILDGW------MDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTV---GFNIGEI 153 (229)
T ss_dssp TCSEEECTHHHHHHHTTC------CCCSEEEECGGGHHHHHHHHHHHHHHHTCCCCGGGTCB---SSCHHHH
T ss_pred CCceeCcHHHHHHHhcCC------ccccEEEEchHHHHHHHHhhccccccccccccCCCCCC---CCCHHHH
Confidence 999999999887665553 7999999999999876 478888 88888888887 6676543
No 8
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C* 3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2
Probab=100.00 E-value=1.5e-36 Score=245.45 Aligned_cols=125 Identities=20% Similarity=0.398 Sum_probs=110.8
Q ss_pred HHHHHHhhhhhccCCCceeEEEEEEecccCCC-CCCceeeeEEccCCCCCCcEEEEecCchhHHHHHHcCCCccCHHHHH
Q 031803 13 VSSIVQYSKETKKRNFTETIELQIGLKNYDPQ-KDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLK 91 (152)
Q Consensus 13 v~~~~~~~~~~~~~kf~esvel~i~lk~~d~k-~~~~i~g~i~LPh~~~k~~kI~Vf~~~~~~~~Ak~aGa~~vg~~eL~ 91 (152)
+.+|++.+++.+.++|+||||++|+| |+|++ +++++||+|.|||+++++.+|||||+++++++|+++||+++|++||+
T Consensus 23 ~~eAv~~lk~~~~~kF~etvel~i~L-~vdp~k~dq~vrg~V~LPh~~~k~~rV~Vfa~~~~~~~Ak~aGad~vg~edLi 101 (234)
T 2wwq_5 23 INEAIALLKELATAKFVESVDVAVNL-GIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGAELVGMEDLA 101 (234)
T ss_dssp HHHHHHHHHHTCCCSSCCEEEEEEEE-CSCCCSSTTSCCEEEECSSCCSSCCCEEEECSSSCHHHHHHHTCSEECSHHHH
T ss_pred HHHHHHHHHHhccCCCCceEEEEEEE-CCCCcccCcccceEEeCCCCCCCCcEEEEEcCchhHHHHHHcCCCEEcHHHHH
Confidence 44555555666889999999999999 99999 59999999999999999999999999999999999999999999996
Q ss_pred -HHhhchHHHHHhhhcccEEEEchhhHhhhhhhhcCCCCCCCCCCCCCCC--CCCccc
Q 031803 92 -KLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKKVPYPCY--SPRIPG 146 (152)
Q Consensus 92 -k~~k~~~~~kkl~~~fd~~lAt~~im~~l~riLGpgL~p~~K~pt~v~~--~~~~~~ 146 (152)
++.++| .+||+|||||+||++|+| ||+.|+|+++||+|+++ ++|+.+
T Consensus 102 ~kik~~~-------~~fD~~iAtp~~m~~l~~-LGkiLgprGlmP~pk~gTvt~dv~~ 151 (234)
T 2wwq_5 102 DQIKKGE-------MNFDVVIASPDAMRVVGQ-LGQVLGPRGLMPNPKVGTVTPNVAE 151 (234)
T ss_dssp HHHHHTC-------CCSSEEEECHHHHHHTTS-SCSCCCSSCCSCCTTTTCBCSCSHH
T ss_pred HHHHcCc-------ccCCEEEECHHHHHHHHH-HhhhhccCCCCCCccCCCccccHHH
Confidence 554454 799999999999999999 99999999999999988 667764
No 9
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent of ribosome, rRNA BI regulation of translation, translation, ribosomal RNA; 2.10A {Aquifex aeolicus}
Probab=100.00 E-value=1.3e-36 Score=246.84 Aligned_cols=129 Identities=26% Similarity=0.395 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHhhhhhccCCCceeEEEEEEecccCCCC-CCceeeeEEccCCCCCCcEEEEecCchhHHHHHHcCCCccC
Q 031803 8 ALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMD 86 (152)
Q Consensus 8 ~l~~av~~~~~~~~~~~~~kf~esvel~i~lk~~d~k~-~~~i~g~i~LPh~~~k~~kI~Vf~~~~~~~~Ak~aGa~~vg 86 (152)
.+.+||+.+++.... +.|+|+||||++|+| |||+++ +++|||+|.|||+++++.||||||+++++++|+++||++||
T Consensus 22 ~l~eAi~~~k~~~~~-~~rkF~etVel~i~L-~vDp~k~d~~vrg~V~LPh~~gk~~kV~Vfa~~~~~~eAk~aGad~vg 99 (242)
T 3qoy_A 22 TLEEAVDLLKKMEEV-LQRRFDETVELAMRL-NVDPRYADQMVRGSVVLPHGLGKPIKVVVFAEGEYAKKAEEAGADYVG 99 (242)
T ss_dssp CHHHHHHHHHHHHHH-HCCSSCCEEEEEEEE-SCCTTSGGGCCEEEEECSCCCSSCCCEEEECCHHHHHHHHHTTCSEEE
T ss_pred CHHHHHHHHHhhccc-ccCCCCCcEEEEEEe-ccCCCCCCCccceEecCCCCCCCCcEEEEEcCHHHHHHHHHcCCCEEC
Confidence 356666666654433 457999999999999 899996 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHh--hchHHHHHhhhcccEEEEchhhHhhhhhhhcCCCCCCCCCCCCCCC--CCCccc
Q 031803 87 VEGLKKLN--KNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKKVPYPCY--SPRIPG 146 (152)
Q Consensus 87 ~~eL~k~~--k~~~~~kkl~~~fd~~lAt~~im~~l~riLGpgL~p~~K~pt~v~~--~~~~~~ 146 (152)
++||++.+ ++| .+||+|||||++||+|+| ||+.|+|+|+||+|+++ ++|+.+
T Consensus 100 ~~dLi~ki~k~g~-------~~fD~~iAtpd~m~~l~~-LGriLGPrGlmP~pk~gTvt~dv~~ 155 (242)
T 3qoy_A 100 GDELINKILKEEW-------TDFDVAIATPEMMPKVAK-LGRILGPRGLMPSPKTGTVTTNVEQ 155 (242)
T ss_dssp SHHHHHHHHHHTC-------CCCSEEEECTTTHHHHGG-GHHHHGGGTCSCCGGGTCBCSCHHH
T ss_pred cHHHHHHHHhCCC-------ccCCEEEECHHHHHHHHH-HhHHhccccCCCcccCCccchhHHH
Confidence 99987644 344 799999999999999886 55555555555555555 478764
No 10
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=1.5e-35 Score=250.30 Aligned_cols=135 Identities=21% Similarity=0.326 Sum_probs=118.8
Q ss_pred cccHHHHHHHHHHHHHhhhhhccCCCceeEEEEEEecccCCC-CCCceeeeEEccCCCCCCcEEEEecCchhHHHHHHcC
Q 031803 3 KLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQ-KDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIG 81 (152)
Q Consensus 3 ~~~~~~l~~av~~~~~~~~~~~~~kf~esvel~i~lk~~d~k-~~~~i~g~i~LPh~~~k~~kI~Vf~~~~~~~~Ak~aG 81 (152)
++|...+|. +.+|++.+++.+.++|+||||++|+| |+|++ +++++||+|.|||++++..+|||||+++++++|+++|
T Consensus 128 ~~d~~~~Y~-l~EAi~llK~~~~~KFdETVEl~I~L-~vDpkk~dq~vRGtV~LPhgtgk~~kVcVfa~ge~~eeAk~AG 205 (352)
T 3bbo_D 128 LREIKQEYD-LKTALSLMKQMSSTKFVETAEAHFRL-NIDPKYNDQQLRATVSLPKGTGKTVKIAVLAQGDKIDEAKAAG 205 (352)
T ss_dssp SCCSSSCCC-TTTTHHHHSTTCCSSSCCEECCEEEE-CSCTTSSTTCCEEEECCTTTSSSSSCEEEECCTTTTHHHHTTT
T ss_pred cccccCCCC-HHHHHHHHHhccccCCCceEEEEEEe-CCCCcccccccceeecCCCCCCCccEEEEEeCchhHHHHHHcC
Confidence 455555554 66777778888999999999999999 99999 5999999999999999999999999999999999999
Q ss_pred CCccCHHHHHHHhhchHHHHHhhhcccEEEEchhhHhhhhhhhcCCCCCCCCCCCCCCC--CCCccc
Q 031803 82 LDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKKVPYPCY--SPRIPG 146 (152)
Q Consensus 82 a~~vg~~eL~k~~k~~~~~kkl~~~fd~~lAt~~im~~l~riLGpgL~p~~K~pt~v~~--~~~~~~ 146 (152)
|++||++||++.++ ++..+||+|||||+||++|+| ||+.|+|+++||+|+.+ ++|+.+
T Consensus 206 AdvVG~edLikkIK------kg~~dFD~fIAtpdmM~~lgr-LGkiLGPRGlMPnPk~GTVt~Dva~ 265 (352)
T 3bbo_D 206 ADIVGGEELIEQIK------GGFMDFDKLIATSDMMAKVAS-LGRILGPRGLMPTPKAGTVTPNVAQ 265 (352)
T ss_dssp CSEEECTTTHHHHT------TTCCCCSEEEECSSSHHHHGG-GGGTTTTTTCSCCTTTTCBSSCHHH
T ss_pred CCccCHHHHHHHHH------hchhhcCEEEECHHHHHHHHh-hcccccccCCCCCCcCCcccccHHH
Confidence 99999999987654 345899999999999999998 99999999999999888 577763
No 11
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=99.92 E-value=2e-25 Score=175.17 Aligned_cols=104 Identities=21% Similarity=0.300 Sum_probs=83.4
Q ss_pred eEEEEEEecccCCCCCCceeeeEEccCCCCCCc-EEEEecCc-hhHHHHHHcCCCccCHHHHH-HHhhchHHHHHhhhcc
Q 031803 31 TIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKM-KVCMLGDA-QHVEEAEKIGLDYMDVEGLK-KLNKNKKLVKKLAKKY 107 (152)
Q Consensus 31 svel~i~lk~~d~k~~~~i~g~i~LPh~~~k~~-kI~Vf~~~-~~~~~Ak~aGa~~vg~~eL~-k~~k~~~~~kkl~~~f 107 (152)
.|+|++.+++ .++..++||+|.|||+++++. +|||||++ +++++|+++||+++|++||+ ++.++| .+|
T Consensus 2 ~ieL~m~l~~--~r~~~~~rg~V~LPhg~~k~~~~V~Vfa~~~~~~~~Ak~aGad~vg~~dLi~ki~~~~-------~~f 72 (189)
T 2ftc_A 2 DLTLDMALGK--KKNVEPFTSVLSLPYPFASEINKVAVFTENASEVKIAEENGAAFAGGTSLIQKIWDDE-------IVA 72 (189)
T ss_pred eEEEEEEecC--CccCcccceEEECCCCCCCCCCEEEEEeCChhHHHHHHHcCCCCcCHHHHHHHHHcCC-------ccC
Confidence 4889999965 467788899999999987776 99999998 58999999999999999995 555555 799
Q ss_pred cEEEEchhhHhhhhhhhcCCCCCCCCCCCCCCC--CCCccc
Q 031803 108 HAFLASESVIKQIPRLLGPGLNKAGKKVPYPCY--SPRIPG 146 (152)
Q Consensus 108 d~~lAt~~im~~l~riLGpgL~p~~K~pt~v~~--~~~~~~ 146 (152)
|+|||||+||++|+|++|+ |+| |||+|.++ ++|+.+
T Consensus 73 D~~iAtp~~m~~l~~l~~~-Lg~--KmP~pk~gTvt~dv~~ 110 (189)
T 2ftc_A 73 DFYVAVPEIMPELNRLRKK-LNK--KYPKLSRNSIGRDIPK 110 (189)
T ss_pred CEEEECHHHHHHHHHhhcc-ccC--CCCcccCCCccccHHH
Confidence 9999999999999876443 332 35555555 667764
No 12
>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A 2vpl_A
Probab=99.23 E-value=4.4e-12 Score=94.84 Aligned_cols=55 Identities=29% Similarity=0.531 Sum_probs=44.1
Q ss_pred CcccHHHHHHHHHHHHHhhhhhccCCCceeEEEEEEecccCCC-CCCceeeeEEccCC
Q 031803 2 SKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQ-KDKRFSGSVKLPHI 58 (152)
Q Consensus 2 ~~~~~~~l~~av~~~~~~~~~~~~~kf~esvel~i~lk~~d~k-~~~~i~g~i~LPh~ 58 (152)
+++|.+.+++ +++|++.+++.+.++|+||||++|+| |+|++ +++++||+|.|||+
T Consensus 12 ~kv~~~~~y~-~~eAi~~~k~~~~~kF~EtVel~i~L-~vDprk~dq~vrgtV~LP~g 67 (137)
T 2ov7_A 12 EKVDPNKIYT-IDEAAHLVKELATAKFDETVEVHAKL-GIDPRRSDQNVRGTVSLPHG 67 (137)
T ss_dssp TTSCTTCCBC-HHHHHHHHHHTCCSSSCCEEEEEEEE-SSCTTCSSCCCEEEEECTTS
T ss_pred HhcCcccccC-HHHHHHHHHhcccCCCCccEEEEEEe-CCCCccccceeeEEEEcCCC
Confidence 5677777762 33334444556889999999999999 99999 49999999999997
No 13
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent of ribosome, rRNA BI regulation of translation, translation, ribosomal RNA; 2.10A {Aquifex aeolicus}
Probab=95.39 E-value=0.0045 Score=49.75 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=21.4
Q ss_pred HhhhhhhhcC-CCCCCCCCCCCCCC
Q 031803 117 IKQIPRLLGP-GLNKAGKKVPYPCY 140 (152)
Q Consensus 117 m~~l~riLGp-gL~p~~K~pt~v~~ 140 (152)
++.|||+||| ||||++|.||+..+
T Consensus 128 l~~LGriLGPrGlmP~pk~gTvt~d 152 (242)
T 3qoy_A 128 VAKLGRILGPRGLMPSPKTGTVTTN 152 (242)
T ss_dssp HGGGHHHHGGGTCSCCGGGTCBCSC
T ss_pred HHHHhHHhccccCCCcccCCccchh
Confidence 5669999999 99999999998766
No 14
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C* 3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2
Probab=94.75 E-value=0.0094 Score=47.61 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.1
Q ss_pred HhhhhhhhcC-CCCCCCCCCCCCCC
Q 031803 117 IKQIPRLLGP-GLNKAGKKVPYPCY 140 (152)
Q Consensus 117 m~~l~riLGp-gL~p~~K~pt~v~~ 140 (152)
++.|||+||| ||||++|.+|+..+
T Consensus 124 l~~LGkiLgprGlmP~pk~gTvt~d 148 (234)
T 2wwq_5 124 VGQLGQVLGPRGLMPNPKVGTVTPN 148 (234)
T ss_dssp TTSSCSCCCSSCCSCCTTTTCBCSC
T ss_pred HHHHhhhhccCCCCCCccCCCcccc
Confidence 4569999999 99999999997765
No 15
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=93.96 E-value=0.028 Score=47.48 Aligned_cols=90 Identities=17% Similarity=0.228 Sum_probs=49.9
Q ss_pred CCceeEEEEEEecccCCCCCCceeeeEEccCCCCC----CcEEEEecCchhHHHHHHcCCCccCHHHHHHHhhchHHHHH
Q 031803 27 NFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP----KMKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKK 102 (152)
Q Consensus 27 kf~esvel~i~lk~~d~k~~~~i~g~i~LPh~~~k----~~kI~Vf~~~~~~~~Ak~aGa~~vg~~eL~k~~k~~~~~kk 102 (152)
+-+|.|.=.|.|.+ ...++.+ .+.|-.+... +.-+=+++.++..+..++ |+. +.. .
T Consensus 168 k~dq~vRGtV~LPh-gtgk~~k---VcVfa~ge~~eeAk~AGAdvVG~edLikkIKk-g~~------------dFD---~ 227 (352)
T 3bbo_D 168 YNDQQLRATVSLPK-GTGKTVK---IAVLAQGDKIDEAKAAGADIVGGEELIEQIKG-GFM------------DFD---K 227 (352)
T ss_dssp SSTTCCEEEECCTT-TSSSSSC---EEEECCTTTTHHHHTTTCSEEECTTTHHHHTT-TCC------------CCS---E
T ss_pred ccccccceeecCCC-CCCCccE---EEEEeCchhHHHHHHcCCCccCHHHHHHHHHh-chh------------hcC---E
Confidence 34688888888853 2223444 3666555421 111224455556666543 332 110 0
Q ss_pred hhhcccEEEEchhhHhhhhhhhcC-CCCCCCCCCCCCCC
Q 031803 103 LAKKYHAFLASESVIKQIPRLLGP-GLNKAGKKVPYPCY 140 (152)
Q Consensus 103 l~~~fd~~lAt~~im~~l~riLGp-gL~p~~K~pt~v~~ 140 (152)
+.-+.|.. ..++.|||+||| |+||++|.+|+..+
T Consensus 228 fIAtpdmM----~~lgrLGkiLGPRGlMPnPk~GTVt~D 262 (352)
T 3bbo_D 228 LIATSDMM----AKVASLGRILGPRGLMPTPKAGTVTPN 262 (352)
T ss_dssp EEECSSSH----HHHGGGGGTTTTTTCSCCTTTTCBSSC
T ss_pred EEECHHHH----HHHHhhcccccccCCCCCCcCCccccc
Confidence 11222222 225669999999 99999999998766
No 16
>3j21_A 50S ribosomal protein L1P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=91.55 E-value=0.076 Score=41.68 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=19.9
Q ss_pred Hhh-hhhhhcC-CCCCCCCCCCCCCC
Q 031803 117 IKQ-IPRLLGP-GLNKAGKKVPYPCY 140 (152)
Q Consensus 117 m~~-l~riLGp-gL~p~~K~pt~v~~ 140 (152)
+|. |||+||| |+||+++.+|+ .+
T Consensus 117 l~k~LGk~LgprgkmP~pk~gtv-~d 141 (216)
T 3j21_A 117 IGRYLGRYLGPRNKMPVVVPPTL-TD 141 (216)
T ss_dssp HHHHHHHHHTTSSSSCCTTTTCB-CS
T ss_pred HHHHHHHHhccCCccCCCcCCcH-HH
Confidence 555 8999999 99999999996 44
No 17
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translation repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A
Probab=85.79 E-value=0.17 Score=39.71 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=18.0
Q ss_pred hHhh-hhhhhcC-CCCCCCCCCC
Q 031803 116 VIKQ-IPRLLGP-GLNKAGKKVP 136 (152)
Q Consensus 116 im~~-l~riLGp-gL~p~~K~pt 136 (152)
.++. |||+||| |+||+++.++
T Consensus 114 ~l~k~LGk~LgprgkmP~pk~gt 136 (219)
T 1i2a_A 114 LIGRYMGVILGPRGKMPKPVPAN 136 (219)
T ss_dssp HHHHHTHHHHGGGTCCCEEECTT
T ss_pred HHHHHHhhhhcccCCCCcccCCC
Confidence 4666 9999999 9999999883
No 18
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z
Probab=85.34 E-value=0.18 Score=39.48 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=18.0
Q ss_pred hHhh-hhhhhcC-CCCCCCCCCC
Q 031803 116 VIKQ-IPRLLGP-GLNKAGKKVP 136 (152)
Q Consensus 116 im~~-l~riLGp-gL~p~~K~pt 136 (152)
.++. |||+||| |+||+++.++
T Consensus 119 ~l~~~LG~~LgprgkmP~p~~gt 141 (217)
T 1mzp_A 119 LAGRILGPALGPRGKFPTPLPNT 141 (217)
T ss_dssp HHHHHTHHHHGGGTCCEEECCSS
T ss_pred HHHHHHhhhccccCCCCcccCCC
Confidence 3666 9999999 9999999883
No 19
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=84.00 E-value=0.17 Score=39.50 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=18.3
Q ss_pred hHhh-hhhhhcC-CCCCCCCCCC
Q 031803 116 VIKQ-IPRLLGP-GLNKAGKKVP 136 (152)
Q Consensus 116 im~~-l~riLGp-gL~p~~K~pt 136 (152)
.++. |||+||| |+||+++.++
T Consensus 114 ~l~~~LGk~LgprgkmP~pk~gt 136 (212)
T 2zkr_5 114 DIGRYLGTVLGPRGKMPEPLDPD 136 (212)
T ss_dssp HHHHHTHHHHHHHTCCEEECCSS
T ss_pred HHHHHHhhhccccCCcCcccCCC
Confidence 4676 9999999 9999999883
No 20
>3u42_A 50S ribosomal protein L1; rossmann fold, rRNA binding, RNA binding; 1.35A {Thermus thermophilus} PDB: 3u56_A 3u4m_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1vsa_A 4f9t_A* 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 3umy_A 2hw8_A 2j01_C 2j03_C 2om7_K* ...
Probab=57.48 E-value=0.7 Score=36.55 Aligned_cols=15 Identities=27% Similarity=0.100 Sum_probs=13.2
Q ss_pred hcCCCCCCCCCCCCC
Q 031803 124 LGPGLNKAGKKVPYP 138 (152)
Q Consensus 124 LGpgL~p~~K~pt~v 138 (152)
||+.|+|+|+||+|.
T Consensus 128 LG~iLGPrGlMPnpk 142 (229)
T 3u42_A 128 LGRILGPRGLLPNPK 142 (229)
T ss_dssp HHHHHHHHTCCCCGG
T ss_pred hccccccccccccCC
Confidence 577999999999984
No 21
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=51.94 E-value=8.5 Score=26.58 Aligned_cols=48 Identities=15% Similarity=0.084 Sum_probs=30.8
Q ss_pred CCCcEEEEecCch---------hHHHHHHcCCC--c--cCHHHHHHHhhchHHHHHhhhcccEEEEchhhH
Q 031803 60 RPKMKVCMLGDAQ---------HVEEAEKIGLD--Y--MDVEGLKKLNKNKKLVKKLAKKYHAFLASESVI 117 (152)
Q Consensus 60 ~k~~kI~Vf~~~~---------~~~~Ak~aGa~--~--vg~~eL~k~~k~~~~~kkl~~~fd~~lAt~~im 117 (152)
.++.||+++|.+- ..+.|++.|.+ + .+..++.+ ...+||.+|-.|.+-
T Consensus 4 ~~~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~~~~----------~~~~~DvvLLgPQV~ 64 (108)
T 3nbm_A 4 SKELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYD----------IMGVYDLIILAPQVR 64 (108)
T ss_dssp -CCEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTSCTT----------TGGGCSEEEECGGGG
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHHHHh----------hccCCCEEEEChHHH
Confidence 4677999999742 34667777877 2 12222211 236799999988865
No 22
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=50.26 E-value=17 Score=24.52 Aligned_cols=47 Identities=11% Similarity=0.160 Sum_probs=30.0
Q ss_pred CcEEEEecCch---------hHHHHHHcCCC----ccCHHHHHHHhhchHHHHHhhhcccEEEEchhhHh
Q 031803 62 KMKVCMLGDAQ---------HVEEAEKIGLD----YMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIK 118 (152)
Q Consensus 62 ~~kI~Vf~~~~---------~~~~Ak~aGa~----~vg~~eL~k~~k~~~~~kkl~~~fd~~lAt~~im~ 118 (152)
..+|+++|..- ..+.+++.|.+ ..+..++.+. ..+||++|.|+++-.
T Consensus 4 ~mkIlvvC~~G~~TSll~~kl~~~~~~~gi~~~i~~~~~~~~~~~----------~~~~D~Ii~t~~l~~ 63 (109)
T 2l2q_A 4 SMNILLVCGAGMSTSMLVQRIEKYAKSKNINATIEAIAETRLSEV----------VDRFDVVLLAPQSRF 63 (109)
T ss_dssp CEEEEEESSSSCSSCHHHHHHHHHHHHHTCSEEEEEECSTTHHHH----------TTTCSEEEECSCCSS
T ss_pred ceEEEEECCChHhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHhh----------cCCCCEEEECCccHH
Confidence 36899999632 23556677764 3355555332 257999999988753
No 23
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=48.97 E-value=16 Score=25.20 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=27.3
Q ss_pred CCCCCcEEEEecC--c-hhHHHHHHcCCCccCHHHHHHHhh
Q 031803 58 IPRPKMKVCMLGD--A-QHVEEAEKIGLDYMDVEGLKKLNK 95 (152)
Q Consensus 58 ~~~k~~kI~Vf~~--~-~~~~~Ak~aGa~~vg~~eL~k~~k 95 (152)
.+.+....+|.++ + ...+.|++.|+.++..+++.+.+.
T Consensus 66 sVSkkTd~LV~G~~~g~sK~~kA~~lgI~Ii~E~~f~~ll~ 106 (109)
T 2k6g_A 66 NVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIR 106 (109)
T ss_dssp SCCTTCCEEEECBCCCHHHHHHHHHHTCEEECHHHHHHHHH
T ss_pred cccCCceEEEECCCCChHHHHHHHHcCCeEEeHHHHHHHHH
Confidence 3446777777775 3 356778888999999988876653
No 24
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=48.07 E-value=17 Score=24.75 Aligned_cols=48 Identities=10% Similarity=0.081 Sum_probs=30.9
Q ss_pred cEEEEecCch---------hHHHHHHcCCC----ccCHHHHHHHhhchHHHHHhhhcccEEEEchhhHhhh
Q 031803 63 MKVCMLGDAQ---------HVEEAEKIGLD----YMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQI 120 (152)
Q Consensus 63 ~kI~Vf~~~~---------~~~~Ak~aGa~----~vg~~eL~k~~k~~~~~kkl~~~fd~~lAt~~im~~l 120 (152)
.||+++|..- ..+.+++.|.+ .++..++... ..+||+++.+|.+--.+
T Consensus 4 kkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~~~~~~~----------~~~~Dvil~~pqv~~~~ 64 (106)
T 1e2b_A 4 KHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEK----------GQNADVVLLGPQIAYML 64 (106)
T ss_dssp EEEEEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEECSSSTTHH----------HHHCSEEEECTTSGGGH
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHhh----------ccCCCEEEEccchhhhH
Confidence 4799999642 23666788887 3344443221 26799999998876443
No 25
>2ov6_A V-type ATP synthase subunit F; F subunit, A1AO ATP synthase, hydrolase; NMR {Methanosarcina mazei}
Probab=45.68 E-value=33 Score=23.14 Aligned_cols=53 Identities=15% Similarity=0.323 Sum_probs=38.9
Q ss_pred cEEEEecCchhHHHHHHcCCC-c--c-CHHHHHHHhhchHHHHHhh--hcccEEEEchhhHhhhh
Q 031803 63 MKVCMLGDAQHVEEAEKIGLD-Y--M-DVEGLKKLNKNKKLVKKLA--KKYHAFLASESVIKQIP 121 (152)
Q Consensus 63 ~kI~Vf~~~~~~~~Ak~aGa~-~--v-g~~eL~k~~k~~~~~kkl~--~~fd~~lAt~~im~~l~ 121 (152)
.||+|+++.+...=-+-+|+. + + ..+|+.+..+ ++. .+|-.++-|.++...+.
T Consensus 1 MkiaVIGD~dtv~GFrLaGi~~v~~v~~~ee~~~~~~------~l~~~~digIIlite~~a~~i~ 59 (101)
T 2ov6_A 1 MELAVIGKSEFVTGFRLAGISKVYETPDIPATESAVR------SVLEDKSVGILVMHNDDIGNLP 59 (101)
T ss_dssp CCEEEEECHHHHHHHHHHTCCEEEECCSTTTHHHHHH------HHHHHTSSSEEEEEHHHHTTCT
T ss_pred CEEEEEECHHHHHHHHHcCCCceEecCCHHHHHHHHH------HHhhCCCeEEEEEcHHHHHHhH
Confidence 379999998877777888999 3 3 5566654432 233 47999999999998765
No 26
>1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A
Probab=44.38 E-value=6.5 Score=30.10 Aligned_cols=26 Identities=15% Similarity=0.264 Sum_probs=23.1
Q ss_pred cEEEEecCchhHHHHHHcCCCccCHH
Q 031803 63 MKVCMLGDAQHVEEAEKIGLDYMDVE 88 (152)
Q Consensus 63 ~kI~Vf~~~~~~~~Ak~aGa~~vg~~ 88 (152)
.|||=+++.+.++.|.++||+++|..
T Consensus 4 vKICGit~~eda~~a~~~GaD~iGfi 29 (205)
T 1nsj_A 4 VKICGITNLEDALFSVESGADAVGFV 29 (205)
T ss_dssp EEECCCCSHHHHHHHHHHTCSEEEEE
T ss_pred EEECCCCcHHHHHHHHHcCCCEEEEE
Confidence 58999999999999999999987765
No 27
>1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4
Probab=44.23 E-value=6.7 Score=30.02 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=22.8
Q ss_pred cEEEEecCchhHHHHHHcCCCccCHH
Q 031803 63 MKVCMLGDAQHVEEAEKIGLDYMDVE 88 (152)
Q Consensus 63 ~kI~Vf~~~~~~~~Ak~aGa~~vg~~ 88 (152)
.|||=+++.+.++.|.++||+++|..
T Consensus 3 vKICGit~~eda~~a~~~GaD~iGfi 28 (203)
T 1v5x_A 3 VKICGITRLEDALLAEALGAFALGFV 28 (203)
T ss_dssp EEECCCCCHHHHHHHHHHTCSEEEEE
T ss_pred EEEcCCCcHHHHHHHHHcCCCEEEEE
Confidence 58999999999999999999977765
No 28
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=43.18 E-value=22 Score=24.07 Aligned_cols=48 Identities=23% Similarity=0.280 Sum_probs=30.1
Q ss_pred CcEEEEecCch----------hHHHHHHcCCC-----ccCHHHHHHHhhchHHHHHhhhcccEEEEchhhHhh
Q 031803 62 KMKVCMLGDAQ----------HVEEAEKIGLD-----YMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQ 119 (152)
Q Consensus 62 ~~kI~Vf~~~~----------~~~~Ak~aGa~-----~vg~~eL~k~~k~~~~~kkl~~~fd~~lAt~~im~~ 119 (152)
..+|++.|..- ..+.+++.|.+ ..+..++... ..+||++|+|+++-..
T Consensus 18 ~~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~~~~i~~~~~~~~~~~----------~~~~DlIi~t~~l~~~ 80 (110)
T 3czc_A 18 MVKVLTACGNGMGSSMVIKMKVENALRQLGVSDIESASCSVGEAKGL----------ASNYDIVVASNHLIHE 80 (110)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECHHHHHHH----------GGGCSEEEEETTTGGG
T ss_pred CcEEEEECCCcHHHHHHHHHHHHHHHHHcCCCeEEEEEeeHHHHhhc----------cCCCcEEEECCchHHH
Confidence 45899999742 12455677765 2344554322 2579999999887544
No 29
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=42.90 E-value=9.3 Score=26.24 Aligned_cols=47 Identities=13% Similarity=0.098 Sum_probs=27.9
Q ss_pred CCcEEEEecCch----------hHHHHHHcCCC----ccCHHHHHHHhhchHHHHHhhhcccEEEEchhhH
Q 031803 61 PKMKVCMLGDAQ----------HVEEAEKIGLD----YMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVI 117 (152)
Q Consensus 61 k~~kI~Vf~~~~----------~~~~Ak~aGa~----~vg~~eL~k~~k~~~~~kkl~~~fd~~lAt~~im 117 (152)
+..+|+++|..- ..+.+++.|.+ ..+..++.. ...+||++|+|+++-
T Consensus 20 ~~kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~~~~~~----------~~~~~DlIist~~l~ 80 (113)
T 1tvm_A 20 SKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIET----------YMDGVHLICTTARVD 80 (113)
T ss_dssp SSEEEEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTTTTT----------STTSCSEEEESSCCC
T ss_pred cccEEEEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEecHHHHhh----------ccCCCCEEEECCccc
Confidence 345899999632 12455677875 223333311 125799999987654
No 30
>2qai_A V-type ATP synthase subunit F; VATF_pyrfu, ATPF, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pyrococcus furiosus}
Probab=38.41 E-value=55 Score=22.63 Aligned_cols=53 Identities=23% Similarity=0.378 Sum_probs=39.1
Q ss_pred cEEEEecCchhHHHHHHcCCC--cc--CH----HHHHHHhhchHHHHHhh--hcccEEEEchhhHhhhh
Q 031803 63 MKVCMLGDAQHVEEAEKIGLD--YM--DV----EGLKKLNKNKKLVKKLA--KKYHAFLASESVIKQIP 121 (152)
Q Consensus 63 ~kI~Vf~~~~~~~~Ak~aGa~--~v--g~----~eL~k~~k~~~~~kkl~--~~fd~~lAt~~im~~l~ 121 (152)
.||+|++|.+...=-+-+|+. ++ .. +|+.+.. +++. .+|-.++-|.++...+.
T Consensus 1 MKIaVIGD~Dtv~GFrLaGi~~~~v~~~~~t~~ee~~~~~------~~l~~~~digIIlIte~ia~~i~ 63 (111)
T 2qai_A 1 MKIVVMGDSDTVVGFRLAGVHEAYEYDESLESVERARNKL------RELLERDDVGIILITERLAQRIG 63 (111)
T ss_dssp CEEEEEECHHHHHHHHHHTCSEEEECCSSHHHHHHHHHHH------HHHHTCTTEEEEEEEHHHHHHHC
T ss_pred CEEEEEECHHHHHHHHHcCCceEEEecCCCCCHHHHHHHH------HHHhhCCCeEEEEEcHHHHhhcc
Confidence 379999998877777888998 33 55 5654433 3344 46999999999998887
No 31
>4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus}
Probab=36.62 E-value=10 Score=29.52 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=20.6
Q ss_pred ccCCCCCCcEEEEecCchhHHHHHHcCCCccCH
Q 031803 55 LPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDV 87 (152)
Q Consensus 55 LPh~~~k~~kI~Vf~~~~~~~~Ak~aGa~~vg~ 87 (152)
+|++..=..|||=+++.+.++ |.++||+++|.
T Consensus 15 ~p~~~~M~VKICGit~~ed~~-a~~~gaD~iGf 46 (228)
T 4aaj_A 15 VPRGSHMFVKICGIKSLEELE-IVEKHADATGV 46 (228)
T ss_dssp -----CCEEEECCCCSHHHHH-HHHTTCSEEEE
T ss_pred CCCCCceEEEECCCCcHHHHH-HHHcCCCEEEE
Confidence 465554456999999888775 56889997664
No 32
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=35.84 E-value=49 Score=22.61 Aligned_cols=54 Identities=15% Similarity=0.259 Sum_probs=39.7
Q ss_pred CcEEEEecCchhHHHHHHcCCC--cc-CHHHHHHHhhchHHHHHhh--hcccEEEEchhhHhhhh
Q 031803 62 KMKVCMLGDAQHVEEAEKIGLD--YM-DVEGLKKLNKNKKLVKKLA--KKYHAFLASESVIKQIP 121 (152)
Q Consensus 62 ~~kI~Vf~~~~~~~~Ak~aGa~--~v-g~~eL~k~~k~~~~~kkl~--~~fd~~lAt~~im~~l~ 121 (152)
+.||+|++|.+...=-+-+|++ ++ ..+|+.+.. +++. .+|-.++-|.++...+.
T Consensus 3 ~mkiaVIgD~dtv~GFrLaGi~~~~v~~~ee~~~~~------~~l~~~~digIIlIte~~a~~i~ 61 (109)
T 2d00_A 3 PVRMAVIADPETAQGFRLAGLEGYGASSAEEAQSLL------ETLVERGGYALVAVDEALLPDPE 61 (109)
T ss_dssp CCCEEEEECHHHHHHHHHTTSEEEECSSHHHHHHHH------HHHHHHCCCSEEEEETTTCSCHH
T ss_pred ccEEEEEeCHHHHHHHHHcCCeEEEeCCHHHHHHHH------HHHhhCCCeEEEEEeHHHHHhhH
Confidence 4589999998878777888998 23 556665443 2233 37999999999887765
No 33
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=35.01 E-value=27 Score=24.24 Aligned_cols=37 Identities=8% Similarity=0.114 Sum_probs=25.3
Q ss_pred CCCcEEEEecC-----chhHHHHHHcCCCccCHHHHHHHhhc
Q 031803 60 RPKMKVCMLGD-----AQHVEEAEKIGLDYMDVEGLKKLNKN 96 (152)
Q Consensus 60 ~k~~kI~Vf~~-----~~~~~~Ak~aGa~~vg~~eL~k~~k~ 96 (152)
.+....+|.++ +...+.|++.|+.++..+.|..+...
T Consensus 45 skkT~~lV~g~~~e~~gsKl~kA~~lgI~IvsE~~l~~~~~~ 86 (113)
T 2cok_A 45 NKASLCISTKKEVEKMNKKMEEVKEANIRVVSEDFLQDVSAS 86 (113)
T ss_dssp TTCSEEECCHHHHHHCCHHHHHHHHTTCCEECTHHHHHHHSC
T ss_pred ccCccEEEECCCCCCCChHHHHHHHCCCcEEeHHHHHHHHhh
Confidence 35555555552 23568899999999999988766543
No 34
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=34.55 E-value=45 Score=23.14 Aligned_cols=56 Identities=20% Similarity=0.363 Sum_probs=38.9
Q ss_pred cEEEEecCchhHHHHHHcCCC--cc-CHHHHHHHhhchHHHHHhh-hcccEEEEchhhHhhhhhhh
Q 031803 63 MKVCMLGDAQHVEEAEKIGLD--YM-DVEGLKKLNKNKKLVKKLA-KKYHAFLASESVIKQIPRLL 124 (152)
Q Consensus 63 ~kI~Vf~~~~~~~~Ak~aGa~--~v-g~~eL~k~~k~~~~~kkl~-~~fd~~lAt~~im~~l~riL 124 (152)
.||+|++|.+...=-+-+|++ ++ ..+|+.+.. ++++ .+|-.++-|.++...+...+
T Consensus 3 mKiaVIGD~Dtv~GFrLaGie~~~v~~~ee~~~~~------~~l~~~digIIlIte~ia~~i~~~i 62 (115)
T 3aon_B 3 YKIGVVGDKDSVSPFRLFGFDVQHGTTKTEIRKTI------DEMAKNEYGVIYITEQCANLVPETI 62 (115)
T ss_dssp EEEEEESCHHHHGGGGGGTCEEECCCSHHHHHHHH------HHHHHTTEEEEEEEHHHHTTCHHHH
T ss_pred eEEEEEECHHHHHHHHHcCCeEEEeCCHHHHHHHH------HHHHhcCceEEEEeHHHHHHhHHHH
Confidence 489999997766666778888 23 555665444 2233 37888999999998876444
No 35
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=33.29 E-value=26 Score=23.28 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=25.6
Q ss_pred CCcEEEEecC--chhHHHHHHcCCCccCHHHHHHHhh
Q 031803 61 PKMKVCMLGD--AQHVEEAEKIGLDYMDVEGLKKLNK 95 (152)
Q Consensus 61 k~~kI~Vf~~--~~~~~~Ak~aGa~~vg~~eL~k~~k 95 (152)
+....+|.++ +...+.|++.|+.++..+++.+.+.
T Consensus 43 kkt~~LV~g~~~gsK~~kA~~lgI~Ii~E~~f~~~l~ 79 (92)
T 1l7b_A 43 RKTSYLVVGENPGSKLEKARALGVPTLTEEELYRLLE 79 (92)
T ss_dssp SSCCCBEECSSSSTTHHHHHCSSSCCEEHHHHHHHHH
T ss_pred CCeeEEEeCCCCChHHHHHHHcCCcEEeHHHHHHHHH
Confidence 4555665554 4567889999999999998776654
No 36
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.60 E-value=48 Score=22.95 Aligned_cols=34 Identities=24% Similarity=0.420 Sum_probs=19.0
Q ss_pred CCcEEEEecCc---hhHHHHHHcCCCccCHHHHHHHh
Q 031803 61 PKMKVCMLGDA---QHVEEAEKIGLDYMDVEGLKKLN 94 (152)
Q Consensus 61 k~~kI~Vf~~~---~~~~~Ak~aGa~~vg~~eL~k~~ 94 (152)
+....+|.+++ ...+.|++.|+.++..+++.+.+
T Consensus 59 kkTd~LV~G~~~g~sKl~KA~~lgI~IisE~~f~~ll 95 (112)
T 2ebu_A 59 KKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLI 95 (112)
T ss_dssp SSCCEEEECSSCCSHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred CCeeEEEecCCCChHHHHHHHHcCCeEEeHHHHHHHH
Confidence 45555555542 34456666666666666655443
No 37
>3iz5_A 60S ribosomal protein L1 (L1P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_A
Probab=29.08 E-value=21 Score=27.43 Aligned_cols=19 Identities=11% Similarity=-0.102 Sum_probs=15.3
Q ss_pred hhhhhhhcC-CCCCCCCCCC
Q 031803 118 KQIPRLLGP-GLNKAGKKVP 136 (152)
Q Consensus 118 ~~l~riLGp-gL~p~~K~pt 136 (152)
+.||+.||| |+||+.+.+|
T Consensus 121 riLG~~l~p~gk~P~p~~~t 140 (216)
T 3iz5_A 121 RLLGPGLNKAGKFPTLVSHQ 140 (216)
T ss_dssp HHHTTTCSCCTTTTCBCSCH
T ss_pred HHhcccccccCCcCCCcCCc
Confidence 346999999 9999988653
No 38
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=25.77 E-value=21 Score=30.72 Aligned_cols=28 Identities=29% Similarity=0.287 Sum_probs=23.7
Q ss_pred CCcEEEEecCchhHHHHHHcCCCccCHH
Q 031803 61 PKMKVCMLGDAQHVEEAEKIGLDYMDVE 88 (152)
Q Consensus 61 k~~kI~Vf~~~~~~~~Ak~aGa~~vg~~ 88 (152)
...|||=+++.+.+..|.++||+++|.-
T Consensus 255 ~~~KICGit~~eda~~a~~~Gad~iGfI 282 (452)
T 1pii_A 255 GENKVCGLTRGQDAKAAYDAGAIYGGLI 282 (452)
T ss_dssp CSCEECCCCSHHHHHHHHHHTCSEEEEE
T ss_pred HhccccCCCcHHHHHHHHhcCCCEEEee
Confidence 3569999999999999999999976654
No 39
>3nx2_A Ferulic acid decarboxylase; 4-vinylguaiacol, catalytic MECH phenolic acid decarboxylase superfamily, lyase; HET: FER; 2.01A {Enterobacter SP} PDB: 3nx1_A*
Probab=22.99 E-value=29 Score=26.08 Aligned_cols=38 Identities=24% Similarity=0.467 Sum_probs=26.8
Q ss_pred CCceeeeEEccCCC--CCCcEEEEecCc-hhHHHHHHcCCC
Q 031803 46 DKRFSGSVKLPHIP--RPKMKVCMLGDA-QHVEEAEKIGLD 83 (152)
Q Consensus 46 ~~~i~g~i~LPh~~--~k~~kI~Vf~~~-~~~~~Ak~aGa~ 83 (152)
++++.|.|.+|+-. .++..||.--+- +..++-+++|..
T Consensus 86 ~k~~hg~IfFp~Wv~~~Pe~tvc~qnD~i~~M~~~Rd~gpt 126 (168)
T 3nx2_A 86 DSLFHGTIFFPRWVMNNPEPTVCFQNDHIPLMNSYREAGPA 126 (168)
T ss_dssp TTEEEEEEEECHHHHHCCGGGCSBGGGCHHHHHHHHHHSCC
T ss_pred ccEEEEEEeccchhhhCcceEEEecCCcHHHHHHHHhcCCC
Confidence 67999999999988 456667632221 345667788876
No 40
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=22.65 E-value=63 Score=23.93 Aligned_cols=35 Identities=6% Similarity=-0.061 Sum_probs=26.3
Q ss_pred cCCCCCCcEEEEecCc-------hhHHHHHHcCCCccCHHHH
Q 031803 56 PHIPRPKMKVCMLGDA-------QHVEEAEKIGLDYMDVEGL 90 (152)
Q Consensus 56 Ph~~~k~~kI~Vf~~~-------~~~~~Ak~aGa~~vg~~eL 90 (152)
-|.+.+..+++||+.. +.+++|++.|+++|+...+
T Consensus 72 ~~~i~~~D~vii~S~Sg~n~~~ie~A~~ake~G~~vIaITs~ 113 (170)
T 3jx9_A 72 HKTLHAVDRVLIFTPDTERSDLLASLARYDAWHTPYSIITLG 113 (170)
T ss_dssp TCCCCTTCEEEEEESCSCCHHHHHHHHHHHHHTCCEEEEESS
T ss_pred cCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEeCc
Confidence 4566777899999952 2578889999998876663
No 41
>2p8g_A PAD, phenolic acid decarboxylase; 2635953, phenolic acid decarboxylase (PAD), structural genom joint center for structural genomics, JCSG; 1.36A {Bacillus subtilis} PDB: 3nad_A
Probab=22.59 E-value=27 Score=26.10 Aligned_cols=37 Identities=22% Similarity=0.453 Sum_probs=25.6
Q ss_pred CCceeeeEEccCCC--CCCcEEEEecCc--hhHHHHHHcCCC
Q 031803 46 DKRFSGSVKLPHIP--RPKMKVCMLGDA--QHVEEAEKIGLD 83 (152)
Q Consensus 46 ~~~i~g~i~LPh~~--~k~~kI~Vf~~~--~~~~~Ak~aGa~ 83 (152)
++++.|.|.+|+.. .++.+|| |-++ +..++-+++|..
T Consensus 79 ~k~~hg~IfFpkwv~e~pektvc-~qndhi~~m~~~r~~g~t 119 (162)
T 2p8g_A 79 EKRMHGIIFFPKWVHEHPEITVC-YQNDHIDLMKESREKYET 119 (162)
T ss_dssp GTEEEEEEEECHHHHHSGGGGCS-BGGGCHHHHHHHHHHSCC
T ss_pred ccEEEEEEeccchHHhCCceeee-cCccHHHHHHHHHHhCCC
Confidence 67999999999988 5566777 4433 234555666765
No 42
>2w2a_A P-coumaric acid decarboxylase; lyase, active site, coumaric acids, decarboxylation, catalyt mechanism; 1.38A {Lactobacillus plantarum} PDB: 2w2b_A 2w2f_A 2gc9_A* 2wsj_A
Probab=21.94 E-value=29 Score=26.72 Aligned_cols=47 Identities=15% Similarity=0.329 Sum_probs=31.0
Q ss_pred eeEEEEEEecccCCCCCCceeeeEEccCCC--CCCcEEEEecCc--hhHHHHHHcCCC
Q 031803 30 ETIELQIGLKNYDPQKDKRFSGSVKLPHIP--RPKMKVCMLGDA--QHVEEAEKIGLD 83 (152)
Q Consensus 30 esvel~i~lk~~d~k~~~~i~g~i~LPh~~--~k~~kI~Vf~~~--~~~~~Ak~aGa~ 83 (152)
.+|.|.+.+ ...++.++|.+|+.. .++.+|| |-++ +..++-+++|..
T Consensus 91 TsVSLV~Dl------~~~~~t~VIfFpkw~~~~pe~tvc-~qnd~i~~m~~~r~~g~~ 141 (194)
T 2w2a_A 91 TDVALDFMP------NEKKLHGTIFFPKWVEEHPEITVT-YQNEHIDLMEQSREKYAT 141 (194)
T ss_dssp CEEEEEEEG------GGTEEEEEEEECHHHHHCGGGGCS-BGGGCHHHHHHHHHHSCC
T ss_pred CEEEEEEEC------CCCeEEEEEEccchHhhCCceeEe-cCccHHHHHHHHHHhCCC
Confidence 455555555 256999999999988 5566777 5433 234555666765
No 43
>3l7p_A Putative nitrogen regulatory protein PII; SMU_1 transcription, transcription regulation; 2.00A {Streptococcus mutans} SCOP: d.58.5.1
Probab=20.31 E-value=1.3e+02 Score=20.48 Aligned_cols=66 Identities=21% Similarity=0.304 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHHHHhhhhhccCCCceeEEEEEEecccCCCC--CCceeeeEEccCCCCCCcEEEEecCchhHHHHHH
Q 031803 5 QSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK--DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEK 79 (152)
Q Consensus 5 ~~~~l~~av~~~~~~~~~~~~~kf~esvel~i~lk~~d~k~--~~~i~g~i~LPh~~~k~~kI~Vf~~~~~~~~Ak~ 79 (152)
.++.+. .|.+|+..+ .|+..+.+. +++|.-..+ ...++|.-.... +-++.+|-++++++..+.+.+
T Consensus 11 rp~kl~-~Vk~AL~~~------G~d~g~Tv~-~V~G~G~q~g~~~~yrG~~~~~~-~~pk~kieivV~d~~ve~vv~ 78 (115)
T 3l7p_A 11 RSDKLE-DLKAALVQS------GFIKGMTIS-QVLGFGNQRGYTEYVRGQKITPT-LLAKVKVEIVAHDAAVEEMIT 78 (115)
T ss_dssp EGGGHH-HHHHHHHHH------TCGGGEEEE-EEEEEC----------------C-EEEEEEEEEEECGGGHHHHHH
T ss_pred CHHHHH-HHHHHHHHC------CCCccEEEE-EEEeEcccCCCceeeccceeeec-ccceEEEEEEEcHHHHHHHHH
Confidence 345554 366665544 343444443 444554442 445666432222 225778999998887665544
Done!