RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 031803
(152 letters)
>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins,
ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A
3izs_A 1s1i_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B
3jyw_A
Length = 217
Score = 183 bits (467), Expect = 5e-60
Identities = 88/133 (66%), Positives = 111/133 (83%)
Query: 1 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPR 60
MSK+ S +RE V +++YS ETKKRNF ET+ELQ+GLKNYDPQ+DKRFSGS+KLP+ PR
Sbjct: 1 MSKITSSQVREHVKELLKYSNETKKRNFLETVELQVGLKNYDPQRDKRFSGSLKLPNCPR 60
Query: 61 PKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQI 120
P M +C+ GDA V+ A+ G+D M V+ LKKLNKNKKL+KKL+KKY+AF+ASE +IKQ+
Sbjct: 61 PNMSICIFGDAFDVDRAKSCGVDAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQV 120
Query: 121 PRLLGPGLNKAGK 133
PRLLGP L+KAGK
Sbjct: 121 PRLLGPQLSKAGK 133
>3iz5_A 60S ribosomal protein L1 (L1P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_A
Length = 216
Score = 173 bits (440), Expect = 6e-56
Identities = 112/133 (84%), Positives = 127/133 (95%), Gaps = 1/133 (0%)
Query: 1 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPR 60
MSKLQSDA+++A++ IV ++E KKR FTET+ELQIGLKNYDPQKDKRFSGSVKLPHIPR
Sbjct: 1 MSKLQSDAVKDAITQIVGEARE-KKRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPR 59
Query: 61 PKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQI 120
PKM+VCMLGDAQHV++AEK+GLDYMDVE LKK+NKNKKLVKKLAKKYHAFLASE++IKQI
Sbjct: 60 PKMRVCMLGDAQHVDQAEKMGLDYMDVESLKKMNKNKKLVKKLAKKYHAFLASEAIIKQI 119
Query: 121 PRLLGPGLNKAGK 133
PRLLGPGLNKAGK
Sbjct: 120 PRLLGPGLNKAGK 132
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 212
Score = 163 bits (414), Expect = 5e-52
Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 4/131 (3%)
Query: 4 LQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDP-QKDKRFSGSVKLPHIPRPK 62
+ + AVS + ++ +RNF ET++L + L++ D R SV LP +
Sbjct: 1 MADQEIENAVSRAL---EDAPERNFRETVDLAVNLRDLDLNDPSNRVDESVVLPAGTGQE 57
Query: 63 MKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPR 122
+ + + + AE++ D +D + L++L + K LA F+A + +++ I R
Sbjct: 58 TTIVVFAEGETALRAEEVADDVLDEDELEELGGDDDAAKDLADDTDFFIAEKGLMQDIGR 117
Query: 123 LLGPGLNKAGK 133
LG L GK
Sbjct: 118 YLGTVLGPRGK 128
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A
{Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5
1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z
Length = 217
Score = 154 bits (391), Expect = 2e-48
Identities = 40/130 (30%), Positives = 69/130 (53%), Gaps = 3/130 (2%)
Query: 6 SDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMK 64
++L EA+ + ++ KRNFT+++E+ + K D +K D + V LP P +
Sbjct: 5 KESLIEALK-LALSTEYNVKRNFTQSVEIILTFKGIDMKKGDLKLREIVPLPKQPSKAKR 63
Query: 65 VCMLGDAQHVEEAEKIGLDY-MDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRL 123
V ++ ++ +E A+K + E L+KL K+ VKKLA++ FL ++ + R+
Sbjct: 64 VLVVPSSEQLEYAKKASPKVVITREELQKLQGQKRPVKKLARQNEWFLINQESMALAGRI 123
Query: 124 LGPGLNKAGK 133
LGP L GK
Sbjct: 124 LGPALGPRGK 133
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein,
translation repressor, ribosome; 1.85A
{Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB:
1cjs_A 1u63_A 1dwu_A
Length = 219
Score = 150 bits (381), Expect = 7e-47
Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 4/128 (3%)
Query: 7 DALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKV 65
+AL +AV + +K RNFT++ E LK D +K + R V LPH + K+
Sbjct: 4 EALLQAVKEARELAK---PRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEAKI 60
Query: 66 CMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLG 125
++G ++AE++GL + E +++L KNK+ ++K+AK + F+A ++ I R +G
Sbjct: 61 AVIGTGDLAKQAEELGLTVIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMG 120
Query: 126 PGLNKAGK 133
L GK
Sbjct: 121 VILGPRGK 128
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent
of ribosome, rRNA BI regulation of translation,
translation, ribosomal RNA; 2.10A {Aquifex aeolicus}
Length = 242
Score = 42.7 bits (101), Expect = 1e-05
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 8 ALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVC 66
L EAV +++ +E +R F ET+EL + L N DP+ D+ GSV LPH +KV
Sbjct: 22 TLEEAVD-LLKKMEEVLQRRFDETVELAMRL-NVDPRYADQMVRGSVVLPHGLGKPIKVV 79
Query: 67 MLGDAQHVEEAEKIGLDY 84
+ + ++ ++AE+ G DY
Sbjct: 80 VFAEGEYAKKAEEAGADY 97
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein,
nucleotide-binding, protein biosynthesis, translation,
zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB:
3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C*
3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2
Length = 234
Score = 41.5 bits (98), Expect = 3e-05
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 8 ALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVC 66
+ EA++ + KE F E++++ + L D +K D+ G+ LPH ++V
Sbjct: 22 DINEAIALL----KELATAKFVESVDVAVNL-GIDARKSDQNVRGATVLPHGTGRSVRVA 76
Query: 67 MLGDAQHVEEAEKIGLDY 84
+ + E A+ G +
Sbjct: 77 VFTQGANAEAAKAAGAEL 94
>4f9t_A 50S ribosomal protein L1; rossman fold, RNA; HET: MPD; 1.46A
{Thermus thermophilus} PDB: 3u4m_A 1eg0_N 1vsp_A 2hgj_C
2hgq_C 2hgu_C 1vsa_A 4abs_C 3zvp_C 1zho_A 1ml5_c*
1yl3_C 1giy_C 2hw8_A 2j01_C 2j03_C 2jl6_C 2jl8_C
2om7_K* 2v47_C ...
Length = 229
Score = 41.1 bits (97), Expect = 3e-05
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 8 ALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVC 66
+ EA + KE F ET+E+ L DP++ D+ G+V LPH +++V
Sbjct: 22 TIDEAAHLV----KELATAKFDETVEVHAKL-GIDPRRSDQNVRGTVSLPHGLGKQVRVL 76
Query: 67 MLGDAQHVEEAEKIGLDY 84
+ + ++EAE+ G DY
Sbjct: 77 AIAKGEKIKEAEEAGADY 94
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 5e-05
Identities = 17/111 (15%), Positives = 37/111 (33%), Gaps = 27/111 (24%)
Query: 9 LREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKR-------FSGSVKLPHIPRP 61
+R+ +++ K T IE L +P + ++ F S +P
Sbjct: 337 IRDGLATW-DNWKHVNCDKLTTIIE--SSLNVLEPAEYRKMFDRLSVFPPSAHIP----- 388
Query: 62 KMKV-CMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFL 111
+ ++ + + + KL+K LV+K K+ +
Sbjct: 389 -TILLSLIWFDVIKSDVMVV---------VNKLHK-YSLVEKQPKESTISI 428
Score = 38.3 bits (88), Expect = 5e-04
Identities = 15/91 (16%), Positives = 36/91 (39%), Gaps = 13/91 (14%)
Query: 7 DALREAVSSIVQ-YSKETKKRNF--------TETIELQIGLKNYDPQKDKRFSGSVKLP- 56
L +VQ + +E + N+ TE + + + Y Q+D+ ++ +
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 57 -HIPRPKMKVCMLGDA-QHVEEAEKIGLDYM 85
++ R + L A + A+ + +D +
Sbjct: 129 YNVSRLQ-PYLKLRQALLELRPAKNVLIDGV 158
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 352
Score = 40.7 bits (95), Expect = 6e-05
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 8 ALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVC 66
L+ A+S + K+ F ET E L N DP+ D++ +V LP +K+
Sbjct: 136 DLKTALSLM----KQMSSTKFVETAEAHFRL-NIDPKYNDQQLRATVSLPKGTGKTVKIA 190
Query: 67 MLGDAQHVEEAEKIGLDY 84
+L ++EA+ G D
Sbjct: 191 VLAQGDKIDEAKAAGADI 208
>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A
{Mycobacterium abscessus} PDB: 3qka_A
Length = 262
Score = 29.1 bits (66), Expect = 0.47
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 51 GSVKLPH-IPRPK-MKVCMLGDAQHVEEAEKIGL 82
G+++LP I + M + + G H EA IGL
Sbjct: 149 GTIRLPRLIGHSRAMDLILTGRPVHANEALDIGL 182
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 0.49
Identities = 20/115 (17%), Positives = 41/115 (35%), Gaps = 38/115 (33%)
Query: 5 QSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMK 64
Q+D L + SI ++ +E +KR ++ + D M+
Sbjct: 76 QADRLTQEPESIRKWREEQRKR-----LQ----------ELDAA-----------SKVME 109
Query: 65 VCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLAS--ESVI 117
+ E+A+K ++ + +++ KNK + K AF +I
Sbjct: 110 ------QEWREKAKKDLEEWNQRQS-EQVEKNKINNRIADK---AFYQQPDADII 154
>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 2.20A {Mycobacterium marinum}
Length = 265
Score = 28.3 bits (64), Expect = 0.82
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 51 GSVKLPH-IPRPK-MKVCMLGDAQHVEEAEKIGL 82
G ++LP IP M++ + GD E A +G+
Sbjct: 150 GLLRLPERIPYAIAMELALTGDNLSAERAHALGM 183
>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious
DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium
avium subsp} PDB: 3r9s_A 3r0o_A
Length = 267
Score = 28.3 bits (64), Expect = 0.89
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 51 GSVKLPH-IPRPK-MKVCMLGDAQHVEEAEKIGL 82
G ++ +PR M++ + G+ A GL
Sbjct: 149 GVFRIAEQLPRKVAMRLLLTGEPLSAAAARDWGL 182
>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics
center for infectious DI niaid; 1.75A {Mycobacterium
marinum}
Length = 278
Score = 28.3 bits (64), Expect = 0.92
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 51 GSVKLPH-IPRPK-MKVCMLGDAQHVEEAEKIGL 82
+V+L IP + + G EA+++GL
Sbjct: 163 SAVRLVRQIPYTVACDLLLTGRHITAAEAKEMGL 196
>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 2.09A {Mycobacterium abscessus}
Length = 256
Score = 28.2 bits (64), Expect = 0.93
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 51 GSVKLPH-IPRPK-MKVCMLGDAQHVEEAEKIGL 82
G ++LP+ IP M++ + G++ E+A K G
Sbjct: 141 GLLRLPNRIPYQVAMELALTGESFTAEDAAKYGF 174
>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural
genomics, PSI-2, protein structure initiative; HET: MSE;
2.40A {Pseudomonas aeruginosa}
Length = 258
Score = 28.3 bits (64), Expect = 1.0
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 51 GSVKLPH-IPRPK-MKVCMLGDAQHVEEAEKIGL 82
+V+ P M+ + GD +EA ++ L
Sbjct: 153 STVRFPRAAGWTDAMRYILTGDEFDADEALRMRL 186
>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus}
Length = 265
Score = 27.9 bits (63), Expect = 1.1
Identities = 6/34 (17%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 51 GSVKLPH-IPRPK-MKVCMLGDAQHVEEAEKIGL 82
LP + ++ + G + + A + GL
Sbjct: 146 AHWTLPRLVGTAVAAELLLTGASFSAQRAVETGL 179
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase
regulat protein complex; 3.10A {Simian virus 40} PDB:
2pkg_C
Length = 174
Score = 27.6 bits (61), Expect = 1.3
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Query: 83 DYMDVEGLKK-----LNKNKKLVKKLAKKYH 108
MD+ GL++ + +K K K++H
Sbjct: 12 QLMDLLGLERSAWGNIPLMRKAYLKKCKEFH 42
>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2;
2.00A {Acinetobacter baumannii}
Length = 266
Score = 27.5 bits (62), Expect = 1.6
Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 4/58 (6%)
Query: 51 GSVKLPH-IPRPK-MKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKK 106
S L K ++ + E A + GL VE + + L
Sbjct: 147 ASQLLVKQAGYHKAAELLFTAKKFNAETALQAGLVNEIVEDA--YATAQATAQHLTAL 202
>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural
genomics center for infectious lyase; 1.55A
{Mycobacterium smegmatis}
Length = 286
Score = 27.6 bits (62), Expect = 1.8
Identities = 11/60 (18%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 51 GSVKLP-HIPRPK-MKVCMLGDAQHVEEAEKIGL--DYMDVEGLKKLNKNKKLVKKLAKK 106
V L ++ R ++ + G+ ++A+ +GL + + L ++ + +V K+ K
Sbjct: 166 PGVALSRNVGRKAAFEMLVTGEFVSADDAKGLGLVNRVVAPKAL--DDEIEAMVSKIVAK 223
>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics,
seattle structur genomics center for infectious disease,
ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB:
3p85_A* 3qyr_A
Length = 256
Score = 27.1 bits (61), Expect = 1.9
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 49 FSGSVKLPH-IPRPK-MKVCMLGDAQHVEEAEKIGL 82
+ SV+LP + ++ + GD ++A + GL
Sbjct: 138 WGLSVRLPQKVGVGLARRMSLTGDYLSAQDALRAGL 173
>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase
superfamily, dimer of trimers, PSI-2, NYSGXRC,
structural genomics; 2.32A {Ruegeria pomeroyi}
Length = 263
Score = 27.3 bits (61), Expect = 2.0
Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 6/60 (10%)
Query: 51 GSVKLP-HIPRPK-MKVCMLGDAQHVEEAEKIGL--DYMDVEGLKKLNKNKKLVKKLAKK 106
+V + I R ++ + G + A GL + L L LA +
Sbjct: 151 PAVAVSRVIGRRAVTEMALTGATYDADWALAAGLINRILPEAAL--ATHVADLAGALAAR 208
>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 2.45A {Mycobacterium avium subsp}
Length = 276
Score = 27.2 bits (61), Expect = 2.0
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 51 GSVKLP-HIPRPK-MKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKK 106
G + P HI + + G + A ++GL + + + KK+ +
Sbjct: 170 GPLTWPLHISLLLAKEYALTGTRISAQRAVELGLANHVADDP--VAEAIACAKKILEL 225
>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Mycobacterium abscessus}
Length = 265
Score = 27.1 bits (61), Expect = 2.5
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 49 FSGSVKLPH-IPRPK-MKVCMLGDAQHVEEAEKIGL 82
V+L IP K M++ + G+ EA GL
Sbjct: 148 AGSMVRLKRQIPYTKAMEMILTGEPLTAFEAYHFGL 183
>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.10A {Mycobacterium abscessus}
Length = 265
Score = 26.7 bits (60), Expect = 2.7
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 51 GSVKLPH-IPRPK-MKVCMLGDAQHVEEAEKIGL 82
+++ P M+ + D EA +IG+
Sbjct: 150 ATIRFPRTAGWGNAMRWMLTADTFDAVEAHRIGI 183
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein;
3.20A {Simian virus 40} SCOP: a.2.3.1
Length = 114
Score = 26.3 bits (58), Expect = 2.8
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Query: 83 DYMDVEGLKK-----LNKNKKLVKKLAKKYH 108
MD+ GL++ + +K K K++H
Sbjct: 9 QLMDLLGLERSAWGNIPLMRKAYLKKCKEFH 39
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics,
PSI2, MCSG, protein structure initiative; 1.60A
{Corynebacterium glutamicum}
Length = 146
Score = 26.5 bits (59), Expect = 3.0
Identities = 16/82 (19%), Positives = 38/82 (46%), Gaps = 16/82 (19%)
Query: 71 AQHV-----EEAEKIGLDYMDVE----GLKKLNKNKKLVKKLAKKYHAFLASESVIKQIP 121
A+ V EEA + +Y+ E GL +++ + + K + ++ ++V +++
Sbjct: 11 ARRVIVLAQEEARMLNHNYIGTEHILLGL--IHEGEGVAAKALESMG--ISLDAVRQEVE 66
Query: 122 RLLGPGLNKAGKKVPYPCYSPR 143
++G G +P ++PR
Sbjct: 67 EIIGQGSQPTTGHIP---FTPR 85
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 3.2
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 8/36 (22%)
Query: 42 DPQKDKRFSGSVKLPHIP--RPKMKVCMLGDAQHVE 75
+ Q K+ S+KL + P + + A +E
Sbjct: 18 EKQALKKLQASLKL-YADDSAPALAI----KAT-ME 47
Score = 25.7 bits (55), Expect = 6.0
Identities = 13/46 (28%), Positives = 16/46 (34%), Gaps = 23/46 (50%)
Query: 78 EKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRL 123
EK + LKKL + KL Y A +S P L
Sbjct: 18 EK--------QALKKLQASLKL-------Y----ADDSA----PAL 40
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR
{Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Length = 103
Score = 25.7 bits (57), Expect = 3.7
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 83 DYMDVEGLKKLNKN---KKLVKKLAKKYH 108
DY ++ G+ K + +K K+LA KYH
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYH 32
>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A
2q2x_A
Length = 243
Score = 26.4 bits (59), Expect = 4.5
Identities = 5/36 (13%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 49 FSGSVKLPH-IPRPK-MKVCMLGDAQHVEEAEKIGL 82
+ S+ L + ++ G+ +E + G+
Sbjct: 136 GATSLILREKLGSELAQEMIYTGENYRGKELAERGI 171
>1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo
sapiens} SCOP: d.189.1.1
Length = 143
Score = 25.7 bits (56), Expect = 4.6
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 25 KRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLD 83
R + + LQ L+ K + + LP +P +G Q + E L+
Sbjct: 55 YRRYRQFHALQSKLEERFGPDSKSSALACTLPTLPAKV----YVGVKQEIAEMRIPALN 109
>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty
acid metabolism, transit peptide, lipid Met crontonase,
mitochondrion, CAsp; 2.3A {Homo sapiens}
Length = 287
Score = 26.1 bits (58), Expect = 4.7
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
Query: 51 GSVKLPH-IPRPK-MKVCMLGDAQHVEEAEKIGL--DYMDVEGLKKLNKNKKLVKKLAKK 106
V L +PR +++ G+ +EA GL + L + ++ +K+A
Sbjct: 173 PGVALARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPEAEL--QEETMRIARKIASL 230
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK;
2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B*
1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B*
2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B*
3maa_B* 1cul_B*
Length = 220
Score = 26.0 bits (58), Expect = 5.5
Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 6/63 (9%)
Query: 73 HVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAF------LASESVIKQIPRLLGP 126
VE+ + IG YM GL + + + + H A + I +
Sbjct: 63 GVEKIKTIGSTYMAATGLSAIPSQEHAQEPERQYMHIGTMVEFAYALVGKLDAINKHSFN 122
Query: 127 GLN 129
Sbjct: 123 DFK 125
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase,
2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A
{Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Length = 328
Score = 26.1 bits (58), Expect = 5.6
Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 49 FSGSVKLPHIPRPK---MKV-CMLGDAQHVEEAEKIGLDYMDVEG 89
+G+ HI + +KV +H +AE++G+D + ++G
Sbjct: 102 TAGNDPGEHIAEFRRHGVKVIHKCTAVRHALKAERLGVDAVSIDG 146
>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 2.20A {Mycobacterium
marinum}
Length = 256
Score = 26.0 bits (58), Expect = 5.6
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 63 MKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKK 106
+ M + EEA ++GL + + L + ++ + LA K
Sbjct: 161 AWLLMSSEWIDAEEALRMGLVWRICSPEELLPEARRHAEILAAK 204
>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily,
lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A
1rjm_A* 1rjn_A* 1q52_A 1q51_A
Length = 334
Score = 25.9 bits (57), Expect = 6.1
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Query: 51 GSVKLPHIPRPK--MKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKK 106
GS L K ++ LG E+ ++G E + + ++ K
Sbjct: 216 GSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAELETVGLQWAAEINAK 273
>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics,
PSI-2, protein structure initiative; 1.70A {Bacillus
halodurans}
Length = 263
Score = 25.6 bits (57), Expect = 6.4
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 63 MKVCMLGDAQHVEEAEKIGLDYMDVEGLKKL-NKNKKLVKKLAKK 106
M + + G EEA ++GL E ++L + K +K +++
Sbjct: 163 MNLLLEGKLFTSEEALRLGLIQEICENKQELQERVKNYLKAVSEG 207
>3k9t_A Putative peptidase; structural genomics, joint center for ST
genomics, JCSG, protein structure initiative, PSI-2,
aminop hydrolase; 2.37A {Clostridium acetobutylicum}
Length = 435
Score = 26.1 bits (56), Expect = 6.4
Identities = 13/103 (12%), Positives = 33/103 (32%), Gaps = 6/103 (5%)
Query: 3 KLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 62
+D+ + + I N E Q+G + +
Sbjct: 337 DGLADSYKTYLEVIYTIENNRTYLNLNPKCEPQLGKRGIYRMIGGGSDYPFDEFAM---- 392
Query: 63 MKVCMLGDAQH--VEEAEKIGLDYMDVEGLKKLNKNKKLVKKL 103
V + D ++ ++ A K G+++ ++ +L+K +
Sbjct: 393 FWVLNMSDGKNSLLDIAYKSGMEFRRIKYAADALYRVELLKLV 435
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 25.6 bits (56), Expect = 6.7
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 83 DYMDVEGLKK---LNKNKKLVKKLAKKYH 108
++ + G+ K + ++ KKLA K H
Sbjct: 3 NFYSLLGVSKTASSREIRQAFKKLALKLH 31
>2ihb_B Regulator of G-protein signalling 10, guanine nucleotide-binding
protein G(K) subunit A; RGS, heterotrimeric G protein,
signall complex; HET: GDP; 2.71A {Homo sapiens} PDB:
2i59_A
Length = 153
Score = 25.4 bits (55), Expect = 7.4
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 84 YMDVEGLKKLNKNKKLVKKLAKKYHAFLASES 115
++ E KK+ ++ +K + Y FL+S++
Sbjct: 64 WLACEDFKKMQDKTQMQEKAKEIYMTFLSSKA 95
>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural
genomics, riken S genomics/proteomics initiative, RSGI;
1.80A {Thermus thermophilus} SCOP: c.14.1.3
Length = 264
Score = 25.6 bits (57), Expect = 7.4
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 63 MKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKK 106
+L + EEAE++GL + VE K K ++ ++LA+
Sbjct: 166 KYHLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVAERLAQG 209
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 88
Score = 24.6 bits (54), Expect = 7.5
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 83 DYMDVEGLKKLNKN---KKLVKKLAKKYH 108
Y D+ G+ K KK KLA KYH
Sbjct: 8 SYYDILGVPKSASERQIKKAFHKLAMKYH 36
>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics,
protein structure INI NEW YORK structural genomix
research consortium; 2.00A {Rhodopseudomonas palustris}
Length = 275
Score = 25.6 bits (57), Expect = 7.7
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 49 FSGSVKLPH-IPRPK-MKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKK 106
GSV+LP I + + + G E G +E +K +L ++A+
Sbjct: 152 GGGSVRLPRLIGVARMADMMLTGRVYSAAEGVVHGFSQYLIENGSAYDKALELGNRVAQN 211
>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET:
BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A*
1nzy_B*
Length = 269
Score = 25.6 bits (57), Expect = 7.8
Identities = 9/44 (20%), Positives = 18/44 (40%)
Query: 63 MKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKK 106
M++ + + EEA+ GL + K+ ++LA
Sbjct: 162 MELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKVARELAAA 205
>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.35A {Mycobacterium abscessus}
Length = 290
Score = 25.6 bits (57), Expect = 8.1
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 63 MKVCMLGDAQHVEEAEKIGL 82
+ + G +EAE+IGL
Sbjct: 186 SDIMLTGRDVDADEAERIGL 205
>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038,
NPPSFA, national project on prote structural and
functional analyses; 2.00A {Geobacillus kaustophilus}
Length = 257
Score = 25.2 bits (56), Expect = 8.5
Identities = 9/44 (20%), Positives = 21/44 (47%)
Query: 63 MKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKK 106
+++ +LG+ EEA +GL + + K+ ++L+
Sbjct: 156 LELAVLGEKVTAEEAAALGLATKVIPLSDWEEEVKQFAERLSAM 199
>3c7l_A Regulator of G-protein signaling 16; RGS, RGS16, GAP, GTPase
activating protein, heterotrimeric G-protein,
lipoprotein, palmitate, phosphoprotein; 1.89A {Mus
musculus} PDB: 3c7k_B* 2ik8_B*
Length = 137
Score = 25.0 bits (54), Expect = 8.5
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 84 YMDVEGLKKLNKNKKLVKKLAKKYHAFLASES 115
++ E KK+ KL + + ++ SE+
Sbjct: 51 WLACEEFKKIRSATKLASRAHHIFDEYIRSEA 82
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 1.70A {Staphylococcus aureus subsp}
SCOP: c.94.1.1
Length = 295
Score = 25.4 bits (56), Expect = 8.6
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 4/30 (13%)
Query: 91 KKLNKNKKLVKKLAKKYHAFLASESVIKQI 120
+ + K K+ + YH S+ K +
Sbjct: 243 NDKDLDNKTYAKIVELYH----SKEAQKAL 268
>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 1.60A {Mycobacterium
marinum M} PDB: 3q1t_A
Length = 272
Score = 25.2 bits (56), Expect = 9.2
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 63 MKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKK 106
+ + EEAE+IGL V+ + L +L + LA+
Sbjct: 169 KYYLLTCETLSGEEAERIGLVSTCVDDDEVLPTATRLAENLAQG 212
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 24.1 bits (53), Expect = 9.5
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 83 DYMDVEGLKK---LNKNKKLVKKLAKKYH 108
DY + G+ + + KK +LAKKYH
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYH 36
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.133 0.374
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,171,902
Number of extensions: 119841
Number of successful extensions: 340
Number of sequences better than 10.0: 1
Number of HSP's gapped: 333
Number of HSP's successfully gapped: 90
Length of query: 152
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 67
Effective length of database: 4,328,508
Effective search space: 290010036
Effective search space used: 290010036
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.2 bits)