Query 031804
Match_columns 152
No_of_seqs 167 out of 1122
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 05:35:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031804.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031804hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0419 Ubiquitin-protein liga 100.0 5.4E-57 1.2E-61 305.5 15.2 152 1-152 1-152 (152)
2 COG5078 Ubiquitin-protein liga 100.0 1.9E-56 4.1E-61 316.9 17.2 150 1-150 1-152 (153)
3 KOG0417 Ubiquitin-protein liga 100.0 1.9E-56 4.2E-61 310.5 14.8 146 5-150 2-147 (148)
4 PTZ00390 ubiquitin-conjugating 100.0 1.1E-51 2.3E-56 295.3 18.0 146 5-150 3-148 (152)
5 PLN00172 ubiquitin conjugating 100.0 5E-51 1.1E-55 290.6 18.0 145 5-149 2-146 (147)
6 KOG0425 Ubiquitin-protein liga 100.0 3.3E-48 7.2E-53 269.8 15.9 149 3-151 4-166 (171)
7 KOG0424 Ubiquitin-protein liga 100.0 2.1E-47 4.5E-52 262.4 15.1 150 1-150 1-157 (158)
8 KOG0426 Ubiquitin-protein liga 100.0 4.2E-47 9.2E-52 257.6 14.7 149 1-149 1-163 (165)
9 KOG0418 Ubiquitin-protein liga 100.0 2E-46 4.3E-51 268.1 14.1 149 1-150 1-153 (200)
10 PF00179 UQ_con: Ubiquitin-con 100.0 5.9E-46 1.3E-50 262.8 15.0 138 8-145 1-140 (140)
11 cd00195 UBCc Ubiquitin-conjuga 100.0 3.1E-45 6.7E-50 259.5 15.9 139 7-145 2-141 (141)
12 smart00212 UBCc Ubiquitin-conj 100.0 3.7E-44 8.1E-49 255.0 17.1 143 7-149 1-145 (145)
13 KOG0421 Ubiquitin-protein liga 100.0 1.7E-43 3.8E-48 243.1 12.1 143 4-147 29-171 (175)
14 KOG0422 Ubiquitin-protein liga 100.0 1.1E-40 2.5E-45 228.0 14.0 145 5-150 3-149 (153)
15 KOG0416 Ubiquitin-protein liga 100.0 1.1E-39 2.5E-44 229.9 11.4 146 1-150 1-148 (189)
16 KOG0420 Ubiquitin-protein liga 100.0 1.3E-38 2.8E-43 225.0 12.2 143 3-148 27-173 (184)
17 KOG0423 Ubiquitin-protein liga 100.0 3E-37 6.6E-42 218.3 7.6 146 4-149 10-155 (223)
18 KOG0427 Ubiquitin conjugating 100.0 4.7E-33 1E-37 188.8 11.2 115 1-116 12-127 (161)
19 KOG0894 Ubiquitin-protein liga 100.0 3E-30 6.6E-35 188.5 15.1 114 3-118 4-120 (244)
20 KOG0429 Ubiquitin-conjugating 100.0 2.3E-29 4.9E-34 184.5 13.7 144 7-151 22-171 (258)
21 KOG0428 Non-canonical ubiquiti 99.9 2E-23 4.3E-28 155.6 9.7 112 3-117 10-125 (314)
22 KOG0895 Ubiquitin-conjugating 99.7 9.4E-18 2E-22 145.6 7.1 113 7-119 854-977 (1101)
23 KOG0895 Ubiquitin-conjugating 99.7 6.9E-16 1.5E-20 134.2 10.6 113 4-116 282-405 (1101)
24 KOG0896 Ubiquitin-conjugating 99.5 8.2E-14 1.8E-18 95.5 7.8 109 6-114 7-122 (138)
25 PF14461 Prok-E2_B: Prokaryoti 98.8 3.6E-08 7.8E-13 69.1 7.4 67 49-115 34-106 (133)
26 KOG0897 Predicted ubiquitin-co 98.7 6.6E-08 1.4E-12 64.8 5.8 93 53-146 13-111 (122)
27 PF05743 UEV: UEV domain; Int 98.5 4.3E-07 9.4E-12 62.6 7.3 78 33-115 32-117 (121)
28 PF08694 UFC1: Ubiquitin-fold 98.3 7.1E-07 1.5E-11 62.2 3.7 95 6-106 26-135 (161)
29 KOG2391 Vacuolar sorting prote 97.9 0.00018 4E-09 57.0 10.0 82 32-118 51-140 (365)
30 KOG3357 Uncharacterized conser 97.7 0.0001 2.2E-09 50.8 5.0 95 6-106 29-138 (167)
31 PF05773 RWD: RWD domain; Int 96.8 0.0064 1.4E-07 40.4 6.6 68 7-75 4-73 (113)
32 PF14462 Prok-E2_E: Prokaryoti 96.6 0.032 6.9E-07 38.4 8.6 89 23-114 13-120 (122)
33 smart00591 RWD domain in RING 96.4 0.047 1E-06 35.8 8.7 27 49-75 39-65 (107)
34 PF14457 Prok-E2_A: Prokaryoti 95.5 0.026 5.6E-07 40.8 4.5 60 55-114 57-125 (162)
35 KOG4018 Uncharacterized conser 92.0 0.67 1.5E-05 34.8 6.2 62 9-73 7-71 (215)
36 PF09765 WD-3: WD-repeat regio 89.4 0.75 1.6E-05 36.4 4.7 85 6-113 101-186 (291)
37 PF14460 Prok-E2_D: Prokaryoti 86.2 1.2 2.6E-05 32.5 3.9 45 73-120 89-136 (175)
38 KOG0309 Conserved WD40 repeat- 85.6 4.1 8.8E-05 36.4 7.2 67 7-75 423-491 (1081)
39 PF06113 BRE: Brain and reprod 81.6 9.3 0.0002 30.8 7.3 66 33-110 53-121 (333)
40 TIGR03737 PRTRC_B PRTRC system 80.2 3.2 6.9E-05 31.7 4.1 42 74-119 131-176 (228)
41 PRK05414 urocanate hydratase; 67.0 15 0.00032 31.5 5.3 29 124-152 282-310 (556)
42 cd00421 intradiol_dioxygenase 61.9 12 0.00025 26.4 3.4 25 49-73 64-89 (146)
43 COG2987 HutU Urocanate hydrata 59.2 23 0.0005 30.0 5.0 29 124-152 282-310 (561)
44 cd03457 intradiol_dioxygenase_ 57.9 14 0.00031 27.3 3.4 25 49-73 85-109 (188)
45 PF01175 Urocanase: Urocanase; 54.4 17 0.00036 31.2 3.5 29 124-152 272-300 (546)
46 KOG0177 20S proteasome, regula 53.2 15 0.00032 27.3 2.7 31 84-114 135-165 (200)
47 TIGR01228 hutU urocanate hydra 53.0 18 0.0004 30.9 3.5 30 123-152 272-301 (545)
48 smart00340 HALZ homeobox assoc 50.5 20 0.00044 19.9 2.3 15 5-19 20-34 (44)
49 cd03459 3,4-PCD Protocatechuat 49.3 25 0.00053 25.2 3.3 25 49-73 71-100 (158)
50 PF11333 DUF3135: Protein of u 45.6 47 0.001 21.2 3.9 26 125-150 8-33 (83)
51 PF03366 YEATS: YEATS family; 44.4 80 0.0017 20.1 4.8 43 34-78 2-44 (84)
52 KOG0662 Cyclin-dependent kinas 43.5 24 0.00052 26.5 2.6 55 65-119 167-225 (292)
53 PF06113 BRE: Brain and reprod 41.2 35 0.00076 27.6 3.3 23 52-74 307-329 (333)
54 PF12018 DUF3508: Domain of un 37.7 55 0.0012 25.7 4.0 31 120-150 237-267 (281)
55 PF14135 DUF4302: Domain of un 36.8 1.2E+02 0.0027 22.9 5.7 70 4-84 9-102 (235)
56 KOG4445 Uncharacterized conser 36.6 45 0.00097 26.8 3.2 25 51-75 45-69 (368)
57 PF00845 Gemini_BL1: Geminivir 36.0 95 0.0021 24.2 4.8 48 31-78 100-155 (276)
58 TIGR02423 protocat_alph protoc 35.8 50 0.0011 24.5 3.3 25 49-73 95-124 (193)
59 cd05845 Ig2_L1-CAM_like Second 35.5 86 0.0019 20.4 4.0 26 48-75 16-41 (95)
60 cd03463 3,4-PCD_alpha Protocat 33.7 58 0.0012 24.0 3.3 24 50-73 92-120 (185)
61 KOG1047 Bifunctional leukotrie 32.1 49 0.0011 28.8 2.9 29 46-75 248-279 (613)
62 PF09280 XPC-binding: XPC-bind 31.0 86 0.0019 18.6 3.1 22 121-142 33-54 (59)
63 PF14455 Metal_CEHH: Predicted 29.3 1.3E+02 0.0029 21.7 4.3 65 7-75 8-76 (177)
64 PF12065 DUF3545: Protein of u 28.7 45 0.00097 19.9 1.6 14 5-18 35-48 (59)
65 PF00779 BTK: BTK motif; Inte 27.4 21 0.00045 18.5 0.0 15 76-90 2-17 (32)
66 COG2819 Predicted hydrolase of 27.1 91 0.002 24.4 3.5 29 46-74 16-46 (264)
67 PRK15486 hpaC 4-hydroxyphenyla 26.5 43 0.00093 24.3 1.5 69 9-94 6-77 (170)
68 TIGR02439 catechol_proteo cate 26.1 86 0.0019 24.8 3.3 25 49-73 179-221 (285)
69 TIGR02296 HpaC 4-hydroxyphenyl 26.0 38 0.00082 24.0 1.2 30 65-94 36-68 (154)
70 PF13950 Epimerase_Csub: UDP-g 24.4 71 0.0015 19.0 2.0 18 95-112 37-54 (62)
71 cd03461 1,2-HQD Hydroxyquinol 23.7 1E+02 0.0022 24.4 3.2 25 49-73 171-213 (277)
72 PHA03200 uracil DNA glycosylas 23.6 1.3E+02 0.0028 23.5 3.7 36 33-71 82-118 (255)
73 TIGR03615 RutF pyrimidine util 23.0 48 0.001 23.5 1.2 31 64-94 40-73 (156)
74 COG1343 CRISPR-associated prot 22.2 2.3E+02 0.005 18.3 4.7 45 1-46 39-83 (89)
75 TIGR02438 catachol_actin catec 22.1 1.1E+02 0.0025 24.1 3.3 25 49-73 183-225 (281)
76 cd03460 1,2-CTD Catechol 1,2 d 22.1 1.2E+02 0.0025 24.1 3.3 25 49-73 175-217 (282)
77 cd05777 DNA_polB_delta_exo DED 21.6 2.9E+02 0.0062 20.7 5.3 63 82-148 147-213 (230)
78 PF11745 DUF3304: Protein of u 21.5 51 0.0011 22.3 1.1 21 83-103 49-69 (118)
79 PF02970 TBCA: Tubulin binding 21.5 96 0.0021 19.9 2.3 16 3-18 6-21 (90)
80 COG3866 PelB Pectate lyase [Ca 21.2 1.8E+02 0.0038 23.6 4.1 39 35-73 198-239 (345)
81 cd03464 3,4-PCD_beta Protocate 21.2 1.3E+02 0.0027 22.9 3.2 24 50-73 122-152 (220)
82 KOG3285 Spindle assembly check 20.3 2E+02 0.0044 21.3 4.0 41 4-44 119-159 (203)
83 PRK04184 DNA topoisomerase VI 20.0 4.8E+02 0.01 22.7 6.8 81 3-86 294-388 (535)
No 1
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-57 Score=305.52 Aligned_cols=152 Identities=84% Similarity=1.373 Sum_probs=150.3
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCeEEeecCCCcceeEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCeeeEeccCcccc
Q 031804 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (152)
Q Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpn 80 (152)
||+.|.+||++|++.++++++.|++..|.++|+..|.+.|+||.+|||+||+|++.|.|+++||.+||.|+|++..||||
T Consensus 1 MstpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPN 80 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPN 80 (152)
T ss_pred CCchHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEeecCcCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHhhhcC
Q 031804 81 IYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 152 (152)
Q Consensus 81 v~~~G~vcl~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~~~ 152 (152)
|+.+|.+|+|+|...|+|.+++.+||.+||+||.+|++++|+|.+||.+|++|+.+|.+++++.|++||+++
T Consensus 81 vya~G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqsw~~~ 152 (152)
T KOG0419|consen 81 VYADGSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQSWSDI 152 (152)
T ss_pred cCCCCcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHhhccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999864
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-56 Score=316.92 Aligned_cols=150 Identities=55% Similarity=1.053 Sum_probs=145.5
Q ss_pred CCh-HHHHHHHHHHHHHhcCCCCCeEEeecCC-CcceeEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCeeeEeccCcc
Q 031804 1 MST-PARKRLMRDFKRLQQDPPAGISGAPQDN-NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFH 78 (152)
Q Consensus 1 Ms~-~a~~RL~~E~~~l~~~~~~g~~~~~~~~-~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~H 78 (152)
|++ .|.+||++|++++++++++|+++.+.++ |+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|+|||
T Consensus 1 ~~s~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~H 80 (153)
T COG5078 1 MSSPSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFH 80 (153)
T ss_pred CCchhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcC
Confidence 444 4999999999999999999999999877 99999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcEeecCcCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHhhh
Q 031804 79 PNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 150 (152)
Q Consensus 79 pnv~~~G~vcl~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 150 (152)
|||+.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.|||++|++|+++|.++||++++++++
T Consensus 81 PNV~~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 81 PNVDPSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred CCcCCCCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999875
No 3
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-56 Score=310.53 Aligned_cols=146 Identities=43% Similarity=0.918 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHHhcCCCCCeEEeecCCCcceeEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCeeeEeccCccccccCC
Q 031804 5 ARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYAD 84 (152)
Q Consensus 5 a~~RL~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~ 84 (152)
|.+||.+|++++.+++++|+++.+.++|++.|+++|.||.|||||||+|++.|.||++||++||+|+|.|+||||||+..
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~ 81 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSN 81 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCcc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEeecCcCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHhhh
Q 031804 85 GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 150 (152)
Q Consensus 85 G~vcl~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 150 (152)
|.||+|+|++.|+|+++|..||.+|+++|.+|++++|++.++|++|+.|+.+|+++||+|+++++.
T Consensus 82 G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~ 147 (148)
T KOG0417|consen 82 GRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAM 147 (148)
T ss_pred ccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999875
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=1.1e-51 Score=295.33 Aligned_cols=146 Identities=38% Similarity=0.783 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHhcCCCCCeEEeecCCCcceeEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCeeeEeccCccccccCC
Q 031804 5 ARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYAD 84 (152)
Q Consensus 5 a~~RL~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~ 84 (152)
+.|||++|++++++++++|+.+.+.++|++.|+++|.||+||||+||.|+++|.||++||++||+|+|.|+||||||+.+
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~ 82 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 82 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEeecCcCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHhhh
Q 031804 85 GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 150 (152)
Q Consensus 85 G~vcl~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 150 (152)
|.||+++|.++|+|++||.+||.+|+++|.+|++++|+|.+||++|++|+++|+++||+|++++++
T Consensus 83 G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~ 148 (152)
T PTZ00390 83 GRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAK 148 (152)
T ss_pred CeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999998865
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=5e-51 Score=290.63 Aligned_cols=145 Identities=48% Similarity=0.923 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHhcCCCCCeEEeecCCCcceeEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCeeeEeccCccccccCC
Q 031804 5 ARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYAD 84 (152)
Q Consensus 5 a~~RL~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~ 84 (152)
|.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||+.+
T Consensus 2 a~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~ 81 (147)
T PLN00172 2 ATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSN 81 (147)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCC
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEeecCcCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHhh
Q 031804 85 GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 149 (152)
Q Consensus 85 G~vcl~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~ 149 (152)
|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.+||++|.+|+++|.++||+|+++++
T Consensus 82 G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a 146 (147)
T PLN00172 82 GSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYA 146 (147)
T ss_pred CEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999998865
No 6
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-48 Score=269.84 Aligned_cols=149 Identities=44% Similarity=0.832 Sum_probs=141.5
Q ss_pred hHHHHHHHHHHHHHhcCCCCCeEEeec-CCCcceeEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCeeeEeccCccccc
Q 031804 3 TPARKRLMRDFKRLQQDPPAGISGAPQ-DNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI 81 (152)
Q Consensus 3 ~~a~~RL~~E~~~l~~~~~~g~~~~~~-~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv 81 (152)
+.+..-|+++|++|++.+.+|+.+... +.|+++|.+.|+||++|+|+||.|+..+.||.+||.+||+++|.|.+|||||
T Consensus 4 ~~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNv 83 (171)
T KOG0425|consen 4 SQASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNV 83 (171)
T ss_pred chhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCc
Confidence 356778899999999999999999885 4599999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEeecCcC-------------CCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHh
Q 031804 82 YADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 148 (152)
Q Consensus 82 ~~~G~vcl~~l~-------------~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~ 148 (152)
+++|.||+++|- +.|.|.+|+++||++|.++|.+||.++|+|-|||+.|++|+++|.++|+++|.+|
T Consensus 84 y~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~s 163 (171)
T KOG0425|consen 84 YEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCVRRS 163 (171)
T ss_pred CCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 999999999993 4599999999999999999999999999999999999999999999999999999
Q ss_pred hhc
Q 031804 149 WTA 151 (152)
Q Consensus 149 ~~~ 151 (152)
.+.
T Consensus 164 ~e~ 166 (171)
T KOG0425|consen 164 QEE 166 (171)
T ss_pred HHh
Confidence 875
No 7
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-47 Score=262.36 Aligned_cols=150 Identities=40% Similarity=0.796 Sum_probs=144.6
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCeEEeec-----CCCcceeEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCeeeEecc
Q 031804 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQ-----DNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR 75 (152)
Q Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~g~~~~~~-----~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~ 75 (152)
||+.++.||++|.+.+.++.+-|+++.|. ..|+..|.+.|.|+.||+||||.|.+.+.||++||.+||+++|.++
T Consensus 1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p 80 (158)
T KOG0424|consen 1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP 80 (158)
T ss_pred CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence 89999999999999999999999999994 3478999999999999999999999999999999999999999999
Q ss_pred CccccccCCCcEeecCcCCC--CCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHhhh
Q 031804 76 MFHPNIYADGSICLDILQNQ--WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 150 (152)
Q Consensus 76 i~Hpnv~~~G~vcl~~l~~~--W~p~~~i~~il~~l~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 150 (152)
+|||||+.+|.|||++|.++ |+|+.||.+||.+||+||.+||..+|+|.||...|.+|+.+|+++||.++++.++
T Consensus 81 l~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~ 157 (158)
T KOG0424|consen 81 LFHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAK 157 (158)
T ss_pred CcCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999865 9999999999999999999999999999999999999999999999999998765
No 8
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-47 Score=257.55 Aligned_cols=149 Identities=42% Similarity=0.886 Sum_probs=144.0
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCeEEee-cCCCcceeEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCeeeEeccCccc
Q 031804 1 MSTPARKRLMRDFKRLQQDPPAGISGAP-QDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHP 79 (152)
Q Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~g~~~~~-~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hp 79 (152)
|+..|+|||++||++|..++|+||.+.| +++|.++|.+.|.||++|+|+||+|..++.||.+||.+||+++|...+|||
T Consensus 1 m~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHP 80 (165)
T KOG0426|consen 1 MAGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHP 80 (165)
T ss_pred CchhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccC
Confidence 7889999999999999999999999999 578999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcEeecCcC-------------CCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHH
Q 031804 80 NIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE 146 (152)
Q Consensus 80 nv~~~G~vcl~~l~-------------~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~ 146 (152)
||+.+|+||+++|- +.|+|..+++.||.++.++|.+|+-++++|.+|+.++++|+++|++.||..+.
T Consensus 81 Niy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lvr 160 (165)
T KOG0426|consen 81 NIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRLVR 160 (165)
T ss_pred cccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999992 46999999999999999999999999999999999999999999999999999
Q ss_pred Hhh
Q 031804 147 QSW 149 (152)
Q Consensus 147 ~~~ 149 (152)
++.
T Consensus 161 KtL 163 (165)
T KOG0426|consen 161 KTL 163 (165)
T ss_pred Hhh
Confidence 875
No 9
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-46 Score=268.14 Aligned_cols=149 Identities=37% Similarity=0.733 Sum_probs=144.8
Q ss_pred CChHHHHHHHHHHHHHhcCC---CCCeEEeecCCCcceeEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCeeeEeccCc
Q 031804 1 MSTPARKRLMRDFKRLQQDP---PAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMF 77 (152)
Q Consensus 1 Ms~~a~~RL~~E~~~l~~~~---~~g~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~ 77 (152)
||. +.+||++|.+++.+++ ..||.++..++|+.+..+.|.||+||||+||.|.++|++|++||++||+|+|.|+||
T Consensus 1 m~~-~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIw 79 (200)
T KOG0418|consen 1 MSN-AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIW 79 (200)
T ss_pred Ccc-HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeee
Confidence 888 9999999999999998 679999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc-CCCcEeecCcCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHhhh
Q 031804 78 HPNIY-ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 150 (152)
Q Consensus 78 Hpnv~-~~G~vcl~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 150 (152)
||||+ .+|.||+|+|.+.|.+++|+.++|.+||++|..|++.+|.+...|++|.+|++.|.+.||.|+...+.
T Consensus 80 HPnVSs~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~ 153 (200)
T KOG0418|consen 80 HPNVSSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAG 153 (200)
T ss_pred cCCCCcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhC
Confidence 99998 89999999999999999999999999999999999999999999999999999999999999988765
No 10
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=5.9e-46 Score=262.83 Aligned_cols=138 Identities=49% Similarity=1.014 Sum_probs=128.8
Q ss_pred HHHHHHHHHhcCCCCCeEEeecCC-CcceeEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCeeeEeccCccccccCCCc
Q 031804 8 RLMRDFKRLQQDPPAGISGAPQDN-NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGS 86 (152)
Q Consensus 8 RL~~E~~~l~~~~~~g~~~~~~~~-~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~G~ 86 (152)
||++|+++++++++.|+.+.+.++ |++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+.+|.
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 899999999999999999999886 9999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCcCC-CCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHH
Q 031804 87 ICLDILQN-QWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIV 145 (152)
Q Consensus 87 vcl~~l~~-~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~ 145 (152)
||+++|.. .|+|+++|.+||.+|+++|.+|+.++|+|.+|+++|++|+++|.++||+|.
T Consensus 81 icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 81 ICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp BGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred chhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 99999985 499999999999999999999999999999999999999999999999874
No 11
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=3.1e-45 Score=259.49 Aligned_cols=139 Identities=50% Similarity=1.045 Sum_probs=136.0
Q ss_pred HHHHHHHHHHhcCCCCCeEEeecCCCcceeEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCeeeEeccCccccccCCCc
Q 031804 7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGS 86 (152)
Q Consensus 7 ~RL~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~G~ 86 (152)
|||++|+++++++++.|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||.|+|.+++|||||+.+|.
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~ 81 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGK 81 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCcCCC-CCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHH
Q 031804 87 ICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIV 145 (152)
Q Consensus 87 vcl~~l~~~-W~p~~~i~~il~~l~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~ 145 (152)
||++++..+ |+|++++.+||.+|+++|.+|+.++|+|.+||.+|++|+++|.++|++++
T Consensus 82 icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 82 ICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred CchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 999999887 99999999999999999999999999999999999999999999999874
No 12
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=3.7e-44 Score=255.03 Aligned_cols=143 Identities=47% Similarity=0.986 Sum_probs=138.6
Q ss_pred HHHHHHHHHHhcCCCCCeEEeecCC-CcceeEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCeeeEeccCccccccCCC
Q 031804 7 KRLMRDFKRLQQDPPAGISGAPQDN-NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADG 85 (152)
Q Consensus 7 ~RL~~E~~~l~~~~~~g~~~~~~~~-~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~G 85 (152)
+||++|++++++++++|+.+.+.++ |+++|+++|.||++|||+||.|++.|.||++||.+||+|+|.+++|||||+.+|
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 5999999999999999999998765 999999999999999999999999999999999999999999999999999999
Q ss_pred cEeecCcC-CCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHhh
Q 031804 86 SICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 149 (152)
Q Consensus 86 ~vcl~~l~-~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~ 149 (152)
.||++++. ++|+|++++.+||.+|+++|.+|+.++|+|.+||.+|.+|+++|+++|++++++++
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 81 EICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred CEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 99999998 89999999999999999999999999999999999999999999999999999874
No 13
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-43 Score=243.06 Aligned_cols=143 Identities=43% Similarity=0.841 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEeecCCCcceeEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCeeeEeccCccccccC
Q 031804 4 PARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA 83 (152)
Q Consensus 4 ~a~~RL~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~ 83 (152)
...|||++|+..|.-...+||++.|.++|++.|.++|.||.+|+|+|-.|++.+.||.+||++||.|+|+|+.|||||+.
T Consensus 29 ~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~ 108 (175)
T KOG0421|consen 29 SVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDL 108 (175)
T ss_pred hHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCccc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEeecCcCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHH
Q 031804 84 DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 147 (152)
Q Consensus 84 ~G~vcl~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~ 147 (152)
.|.||+|+|++.|+..+++++||.+||++|-+|+..+|+|..||+++. |.++|++.+.+.-++
T Consensus 109 ~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~ 171 (175)
T KOG0421|consen 109 SGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKE 171 (175)
T ss_pred cccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999 999999999887664
No 14
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-40 Score=228.02 Aligned_cols=145 Identities=26% Similarity=0.654 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHhcCCCCCeE-EeecCCCcceeEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCeeeEeccCccccccC
Q 031804 5 ARKRLMRDFKRLQQDPPAGIS-GAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA 83 (152)
Q Consensus 5 a~~RL~~E~~~l~~~~~~g~~-~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~ 83 (152)
|.+||++|+.+|+++....+. +...+.|++.|++.| .|.+-||..|.|+++|.||.+|||+||+|.|.|+||||||++
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~ll-ipd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe 81 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLL-IPDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDE 81 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEe-cCCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCC
Confidence 789999999999999877554 555789999999999 588889999999999999999999999999999999999999
Q ss_pred CCcEeecCcC-CCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHhhh
Q 031804 84 DGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 150 (152)
Q Consensus 84 ~G~vcl~~l~-~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 150 (152)
.|.||++++. ++|+|+..+.+||+.|..++.+|+++.|++.|+|..|.+|+..|.++|.++++++.+
T Consensus 82 ~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e 149 (153)
T KOG0422|consen 82 KGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSE 149 (153)
T ss_pred CCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcC
Confidence 9999999995 789999999999999999999999999999999999999999999999999998865
No 15
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-39 Score=229.92 Aligned_cols=146 Identities=34% Similarity=0.755 Sum_probs=136.3
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCeEEeecCCCcceeEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCeeeEeccCcccc
Q 031804 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (152)
Q Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpn 80 (152)
||+ ..||+..|...|... +..+...++++.+.+|.+.||.+|||+||+|+++|.+|++||++.|.|.|.++|||||
T Consensus 1 ms~-~~rRid~Dv~KL~~s---~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPN 76 (189)
T KOG0416|consen 1 MSS-GKRRIDTDVMKLLMS---DYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPN 76 (189)
T ss_pred CCC-cccchhhHHHHHHhc---CCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCC
Confidence 444 569999999888765 5678888999999999999999999999999999999999999999999999999999
Q ss_pred cc-CCCcEeecCcCCCCCCcCCHHHHHHH-HHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHhhh
Q 031804 81 IY-ADGSICLDILQNQWSPIYDVAAILTS-IQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 150 (152)
Q Consensus 81 v~-~~G~vcl~~l~~~W~p~~~i~~il~~-l~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 150 (152)
|+ .+|.||++.+...|+|.+.+..|+.. |-+||..||+.+|+|.|||.+|.++++.|+++||+++++++.
T Consensus 77 IDe~SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~ 148 (189)
T KOG0416|consen 77 IDEASGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYAT 148 (189)
T ss_pred chhccCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcC
Confidence 99 89999999999999999999999976 688999999999999999999999999999999999999874
No 16
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-38 Score=224.97 Aligned_cols=143 Identities=31% Similarity=0.687 Sum_probs=126.8
Q ss_pred hHHHHHHHHHHHHHhcCCCCCeEEe--ecCCCcc--eeEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCeeeEeccCcc
Q 031804 3 TPARKRLMRDFKRLQQDPPAGISGA--PQDNNIM--LWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFH 78 (152)
Q Consensus 3 ~~a~~RL~~E~~~l~~~~~~g~~~~--~~~~~~~--~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~H 78 (152)
+.|+-||++|..++. .|++++.. ...+++. +..++| -|.++.|.||.|.|.+++|+.||++||+|.|+|+|||
T Consensus 27 s~a~lrl~~di~eln--Lp~t~~~s~~~~~~d~~~~~~elti-~PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~H 103 (184)
T KOG0420|consen 27 SAALLRLKKDILELN--LPPTCSLSFPDSPDDLNNLEFELTI-TPDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYH 103 (184)
T ss_pred cHHHHHHHhhhhhcc--CCCccccccccCCcccccceEEEEE-ccCcceecCceEEEEEECCCCCCCCCCeeeeeecccc
Confidence 567888888888884 45555532 2234443 588888 5888899999999999999999999999999999999
Q ss_pred ccccCCCcEeecCcCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHh
Q 031804 79 PNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 148 (152)
Q Consensus 79 pnv~~~G~vcl~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~ 148 (152)
|||+.+|.||+++|+++|+|..+|.+|+.+|+.+|.+|+++||+|.|||.++++|++.|...||+.+...
T Consensus 104 PNId~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg 173 (184)
T KOG0420|consen 104 PNIDLDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGG 173 (184)
T ss_pred CCcCCcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999987643
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-37 Score=218.26 Aligned_cols=146 Identities=36% Similarity=0.713 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEeecCCCcceeEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCeeeEeccCccccccC
Q 031804 4 PARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA 83 (152)
Q Consensus 4 ~a~~RL~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~ 83 (152)
-..+.|.+|++.+...||.||.|.+.++|.....+.|.||.||||++|.|++.+.+..+||.+||+-+|+|+||||||..
T Consensus 10 ~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaa 89 (223)
T KOG0423|consen 10 NVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAA 89 (223)
T ss_pred HHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCccc
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEeecCcCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHhh
Q 031804 84 DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 149 (152)
Q Consensus 84 ~G~vcl~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~ 149 (152)
+|.||.+.|..+|+|..+|..||..|+.+|..|++++.+|.+|.+++.++.++|.+.||-+++-++
T Consensus 90 NGEICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa 155 (223)
T KOG0423|consen 90 NGEICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHA 155 (223)
T ss_pred CceehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999999998887654
No 18
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-33 Score=188.81 Aligned_cols=115 Identities=36% Similarity=0.715 Sum_probs=108.8
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCeEEeecCCCcceeEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCeeeEeccC-ccc
Q 031804 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRM-FHP 79 (152)
Q Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i-~Hp 79 (152)
|+..|.+||++|+.+++.+||.|+... ..+|+..|.+.+.|.+||.|+|.+|.++++||+.||++.|.|.|..++ .||
T Consensus 12 ls~~at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HP 90 (161)
T KOG0427|consen 12 LSKIATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHP 90 (161)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCC
Confidence 456789999999999999999999887 778999999999999999999999999999999999999999999775 799
Q ss_pred cccCCCcEeecCcCCCCCCcCCHHHHHHHHHHhhcCC
Q 031804 80 NIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDP 116 (152)
Q Consensus 80 nv~~~G~vcl~~l~~~W~p~~~i~~il~~l~~ll~~p 116 (152)
+|+++|.||+++|.++|+|++++.+|+++|.++|+.-
T Consensus 91 HiYSNGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs 127 (161)
T KOG0427|consen 91 HIYSNGHICLDILYDSWSPAMSVQSVCLSILSMLSSS 127 (161)
T ss_pred ceecCCeEEEEeecccCCcchhhHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999853
No 19
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3e-30 Score=188.49 Aligned_cols=114 Identities=34% Similarity=0.719 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHHHHhcCCCCCeEEeecCCCcceeEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCeeeEeccCcccccc
Q 031804 3 TPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIY 82 (152)
Q Consensus 3 ~~a~~RL~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~ 82 (152)
..|.|||++||+.|+++|.++|.+.|..+|+++||.+|.||++|||+||.|+..|.||++||++||.|++.|+- ..+-
T Consensus 4 k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPN--GRFk 81 (244)
T KOG0894|consen 4 KAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPN--GRFK 81 (244)
T ss_pred hHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCC--Ccee
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999861 2223
Q ss_pred CCCcEeecCc---CCCCCCcCCHHHHHHHHHHhhcCCCC
Q 031804 83 ADGSICLDIL---QNQWSPIYDVAAILTSIQSLLCDPNP 118 (152)
Q Consensus 83 ~~G~vcl~~l---~~~W~p~~~i~~il~~l~~ll~~p~~ 118 (152)
.+-++|+++- .+.|+|.+++++||.+|.+.|.+..+
T Consensus 82 tntRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~p 120 (244)
T KOG0894|consen 82 TNTRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDSP 120 (244)
T ss_pred cCceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCCC
Confidence 4478999766 58899999999999999999876444
No 20
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.3e-29 Score=184.47 Aligned_cols=144 Identities=27% Similarity=0.508 Sum_probs=134.4
Q ss_pred HHHHHHHHHHhcCCCCCeEEeecCCCcceeEEEEECCCCCCCCCcEEEEEEEecCCCCC--CCCeeeEeccCcccccc-C
Q 031804 7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPN--KPPTVRFVSRMFHPNIY-A 83 (152)
Q Consensus 7 ~RL~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~--~pP~v~f~t~i~Hpnv~-~ 83 (152)
-.|+.|+..+++.+.+||++.|+..|-+.|.++|++..| .|.||+|+|+|.+|++||. .-|+|.|.+.++||+|. .
T Consensus 22 y~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFvr~G-iyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~ 100 (258)
T KOG0429|consen 22 YALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFVRKG-IYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPK 100 (258)
T ss_pred HHHHHHHHHHHhccCCceEEcccccccceEEEEEEEecc-cccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCC
Confidence 458889999999999999999999999999999999999 8999999999999999995 46999999999999999 8
Q ss_pred CCcEeecCcCCCCCCc-CCHHHHHHHHHHhhcCCCCCCC--CCHHHHHHHHHCHHHHHHHHHHHHHHhhhc
Q 031804 84 DGSICLDILQNQWSPI-YDVAAILTSIQSLLCDPNPNSP--ANSEAARMFSENKREYNRRVREIVEQSWTA 151 (152)
Q Consensus 84 ~G~vcl~~l~~~W~p~-~~i~~il~~l~~ll~~p~~~~p--~n~~a~~~~~~~~~~f~~~~r~~~~~~~~~ 151 (152)
++.+|+.-....|+.. .+|+++|..||.+|++|+...+ .|++|+.+|++++++|.++|+++|+.|.+.
T Consensus 101 skeLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~sr~~ 171 (258)
T KOG0429|consen 101 SKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKASRSM 171 (258)
T ss_pred ccceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9999999888889876 7899999999999999998766 599999999999999999999999998764
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2e-23 Score=155.59 Aligned_cols=112 Identities=29% Similarity=0.667 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHHHHhcCCCCCeEEeecCCCcceeEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCeeeEeccCcccccc
Q 031804 3 TPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIY 82 (152)
Q Consensus 3 ~~a~~RL~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~ 82 (152)
+.|.|||++|.++++ +|...+.+.|.++|+++|+++|.||.||-|+||+|+.+|.||.+||++||.+..+|+ ...+.
T Consensus 10 npaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTp--NGRFE 86 (314)
T KOG0428|consen 10 NPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTP--NGRFE 86 (314)
T ss_pred CHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcC--CCcee
Confidence 578999999999999 777788899999999999999999999999999999999999999999999999985 23344
Q ss_pred CCCcEeecCcC---CCCCCcCCHHHHHHHHHHhhc-CCC
Q 031804 83 ADGSICLDILQ---NQWSPIYDVAAILTSIQSLLC-DPN 117 (152)
Q Consensus 83 ~~G~vcl~~l~---~~W~p~~~i~~il~~l~~ll~-~p~ 117 (152)
.+.+||+++-. +.|.|+++|++.|..|..+|- .|+
T Consensus 87 ~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt~p~ 125 (314)
T KOG0428|consen 87 VNKKICLSISGYHPETWQPSWSIRTALLALIGFMPTKPE 125 (314)
T ss_pred eCceEEEEecCCCccccCcchhHHHHHHHHHccccCCCC
Confidence 56789998874 789999999999999988874 454
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=9.4e-18 Score=145.62 Aligned_cols=113 Identities=36% Similarity=0.721 Sum_probs=101.3
Q ss_pred HHHHHHHHHHhcCCCCCeEEeecCCCcceeEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCeeeEecc--CccccccCC
Q 031804 7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR--MFHPNIYAD 84 (152)
Q Consensus 7 ~RL~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~--i~Hpnv~~~ 84 (152)
+..+.|++-+..+.|.||+|...++.+....+.|.|++||||..|.|.|.+.||.+||..||.+...+. .+.||.|.+
T Consensus 854 ~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~ 933 (1101)
T KOG0895|consen 854 KKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYED 933 (1101)
T ss_pred HHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccccc
Confidence 345567888888999999999999999999999999999999999999999999999999999999974 689999999
Q ss_pred CcEeecCcC-------CCCCCcCCHHHHHHHHHHhhcC--CCCC
Q 031804 85 GSICLDILQ-------NQWSPIYDVAAILTSIQSLLCD--PNPN 119 (152)
Q Consensus 85 G~vcl~~l~-------~~W~p~~~i~~il~~l~~ll~~--p~~~ 119 (152)
|+||+++|. +-|+|+-+|.++|.+||.|..+ |.++
T Consensus 934 g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~~~py~n 977 (1101)
T KOG0895|consen 934 GKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLNEEPYFN 977 (1101)
T ss_pred cceehhhhccccCCCccccCcchhHHHHHHHhhhhhcccccccC
Confidence 999999995 5699999999999999998764 5444
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=6.9e-16 Score=134.18 Aligned_cols=113 Identities=35% Similarity=0.769 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEeecCCCcceeEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCeeeEecc---Ccccc
Q 031804 4 PARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR---MFHPN 80 (152)
Q Consensus 4 ~a~~RL~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~---i~Hpn 80 (152)
.-.+|+++|++.+.++.++|+.+.+.+..+....+.|.||.||||++|+|.|.|.||..||..||.+.+++. .+.||
T Consensus 282 ~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPN 361 (1101)
T KOG0895|consen 282 NWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPN 361 (1101)
T ss_pred hhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCC
Confidence 347899999999999999999999999999999999999999999999999999999999999999999976 67999
Q ss_pred ccCCCcEeecCcC-------CCCCCc-CCHHHHHHHHHHhhcCC
Q 031804 81 IYADGSICLDILQ-------NQWSPI-YDVAAILTSIQSLLCDP 116 (152)
Q Consensus 81 v~~~G~vcl~~l~-------~~W~p~-~~i~~il~~l~~ll~~p 116 (152)
.|.+|+||+++|. +.|+|. .+|.++|..||.+..+-
T Consensus 362 lYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 362 LYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE 405 (1101)
T ss_pred cccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence 9999999999983 679998 88999999999988654
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=8.2e-14 Score=95.49 Aligned_cols=109 Identities=20% Similarity=0.473 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHhcCCCCCeEEee--cCCC--cceeEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCeeeEeccCccccc
Q 031804 6 RKRLMRDFKRLQQDPPAGISGAP--QDNN--IMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI 81 (152)
Q Consensus 6 ~~RL~~E~~~l~~~~~~g~~~~~--~~~~--~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv 81 (152)
.-||.+|+.+-++--.+|-.-.. +.+| +..|...|.||+.|+||+.+|.+.|...++||..||.|+|.+++--..|
T Consensus 7 nfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gv 86 (138)
T KOG0896|consen 7 NFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGV 86 (138)
T ss_pred chhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeeccc
Confidence 45788888877665444433222 2333 4689999999999999999999999999999999999999999988888
Q ss_pred c-CCCcEeecCc--CCCCCCcCCHHHHHHHHHHhhc
Q 031804 82 Y-ADGSICLDIL--QNQWSPIYDVAAILTSIQSLLC 114 (152)
Q Consensus 82 ~-~~G~vcl~~l--~~~W~p~~~i~~il~~l~~ll~ 114 (152)
. .+|.|.-..+ ..+|...+++..+|..++.++.
T Consensus 87 n~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~ 122 (138)
T KOG0896|consen 87 NSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMM 122 (138)
T ss_pred ccCCCccCccccchhhcccccchhhHHHHhhhHHHH
Confidence 7 6777765333 3789999999999999986554
No 25
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.77 E-value=3.6e-08 Score=69.06 Aligned_cols=67 Identities=34% Similarity=0.691 Sum_probs=60.8
Q ss_pred CCcEEEEEEEecCCCCCCCCeeeEeccC---ccccccCCCcEee---cCcCCCCCCcCCHHHHHHHHHHhhcC
Q 031804 49 DGGTFKLTLQFTEDYPNKPPTVRFVSRM---FHPNIYADGSICL---DILQNQWSPIYDVAAILTSIQSLLCD 115 (152)
Q Consensus 49 ~gg~f~~~i~~p~~yP~~pP~v~f~t~i---~Hpnv~~~G~vcl---~~l~~~W~p~~~i~~il~~l~~ll~~ 115 (152)
.|+.+.+.|.+|++||..||.|....+. +-|||+.+|.+|+ ...-+.|.|.-.+.++|..++.+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999998654 6799999999999 77778999999999999999999883
No 26
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=6.6e-08 Score=64.77 Aligned_cols=93 Identities=23% Similarity=0.498 Sum_probs=69.8
Q ss_pred EEEEEEecCCCCCCCCeeeEeccCc-cccccCCCcEeecCcC-CCCCCcCCHHHHHHHHHHhhcCCCC--CCCCCHHHHH
Q 031804 53 FKLTLQFTEDYPNKPPTVRFVSRMF-HPNIYADGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNP--NSPANSEAAR 128 (152)
Q Consensus 53 f~~~i~~p~~yP~~pP~v~f~t~i~-Hpnv~~~G~vcl~~l~-~~W~p~~~i~~il~~l~~ll~~p~~--~~p~n~~a~~ 128 (152)
.-+.+.|+++||+.||.++...++- -.-|-.+|.||+.++. ++|+.+++++.++.++...+..... ..+++.+..
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~sk- 91 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEKSSK- 91 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcchhhh-
Confidence 3466789999999999999887643 3445578999999995 7899999999999999999998665 455554433
Q ss_pred HHH--HCHHHHHHHHHHHHH
Q 031804 129 MFS--ENKREYNRRVREIVE 146 (152)
Q Consensus 129 ~~~--~~~~~f~~~~r~~~~ 146 (152)
+|. +--+.|+..++..-+
T Consensus 92 ~~s~~qa~~sfksLv~~hek 111 (122)
T KOG0897|consen 92 LYSHSQAQQSFKSLVQIHEK 111 (122)
T ss_pred HhhHHHHHHHHHHHHHHHHh
Confidence 553 344557777765544
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.54 E-value=4.3e-07 Score=62.63 Aligned_cols=78 Identities=19% Similarity=0.496 Sum_probs=54.7
Q ss_pred cceeEEEEECCCCCCCCCcEE--EEEEEecCCCCCCCCeeeEeccCc-----cccccCCCcEeecCcCCCCCC-cCCHHH
Q 031804 33 IMLWNAVIFGPDDTPWDGGTF--KLTLQFTEDYPNKPPTVRFVSRMF-----HPNIYADGSICLDILQNQWSP-IYDVAA 104 (152)
Q Consensus 33 ~~~w~~~i~gp~~t~y~gg~f--~~~i~~p~~yP~~pP~v~f~t~i~-----Hpnv~~~G~vcl~~l~~~W~p-~~~i~~ 104 (152)
+....++|. -.|+|..| .+.|.+|.+||.+||.+....... +.+|+.+|+|.++.| ++|++ ..++.+
T Consensus 32 LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL-~~W~~~~s~L~~ 106 (121)
T PF05743_consen 32 LLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL-QNWNPPSSNLVD 106 (121)
T ss_dssp EEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH-HT--TTTS-HHH
T ss_pred EEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh-ccCCCCCCCHHH
Confidence 445555552 25888887 577889999999999998874322 449999999999888 66876 788999
Q ss_pred HHHHHHHhhcC
Q 031804 105 ILTSIQSLLCD 115 (152)
Q Consensus 105 il~~l~~ll~~ 115 (152)
++..+++.|.+
T Consensus 107 lv~~l~~~F~~ 117 (121)
T PF05743_consen 107 LVQELQAVFSE 117 (121)
T ss_dssp HHHHHHHCCCH
T ss_pred HHHHHHHHHhH
Confidence 99999988863
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.30 E-value=7.1e-07 Score=62.19 Aligned_cols=95 Identities=23% Similarity=0.442 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhcCCCCCeEEeecCCCcceeEEEEECCCCCCCCCcE----------EEEEEEecCCCCCCCCeeeEecc
Q 031804 6 RKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGT----------FKLTLQFTEDYPNKPPTVRFVSR 75 (152)
Q Consensus 6 ~~RL~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~gp~~t~y~gg~----------f~~~i~~p~~yP~~pP~v~f~t~ 75 (152)
..||..||..|-+ +++...++-..|.-.=..+.||-|.|.. |.+++.+|..||..||.|..-.-
T Consensus 26 ~~RLKEEy~aLI~------Yv~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeL 99 (161)
T PF08694_consen 26 VQRLKEEYQALIK------YVENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIALPEL 99 (161)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-GGG
T ss_pred HHHHHHHHHHHHH------HHHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceecccc
Confidence 5899999999876 3444444444565555567777777743 66778899999999999987521
Q ss_pred -CccccccCCCcEeecCcCC-CC---CCcCCHHHHH
Q 031804 76 -MFHPNIYADGSICLDILQN-QW---SPIYDVAAIL 106 (152)
Q Consensus 76 -i~Hpnv~~~G~vcl~~l~~-~W---~p~~~i~~il 106 (152)
--..-.+..|+||++.... =| .|.++|...|
T Consensus 100 dGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 100 DGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp TTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred CCchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 1234567889999987752 35 5678877665
No 29
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.00018 Score=56.98 Aligned_cols=82 Identities=20% Similarity=0.512 Sum_probs=63.5
Q ss_pred CcceeEEEEECCCCCCCCCcEE--EEEEEecCCCCCCCCeeeEecc-----CccccccCCCcEeecCcCCCCC-CcCCHH
Q 031804 32 NIMLWNAVIFGPDDTPWDGGTF--KLTLQFTEDYPNKPPTVRFVSR-----MFHPNIYADGSICLDILQNQWS-PIYDVA 103 (152)
Q Consensus 32 ~~~~w~~~i~gp~~t~y~gg~f--~~~i~~p~~yP~~pP~v~f~t~-----i~Hpnv~~~G~vcl~~l~~~W~-p~~~i~ 103 (152)
+++...++| -.+|.|..| .+.|.+.+.||..||.+..... --|-+|+.+|.|.++.| .+|. |+.++.
T Consensus 51 ~ll~~~GTI----p~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYL-h~W~~pssdLv 125 (365)
T KOG2391|consen 51 LLLQLDGTI----PVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYL-HNWDPPSSDLV 125 (365)
T ss_pred chhhccCcc----cccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhh-ccCCCccchHH
Confidence 445555555 357888777 4778899999999999977522 12899999999999999 5686 568899
Q ss_pred HHHHHHHHhhcCCCC
Q 031804 104 AILTSIQSLLCDPNP 118 (152)
Q Consensus 104 ~il~~l~~ll~~p~~ 118 (152)
.+++.+.+.|.++.+
T Consensus 126 ~Liq~l~a~f~~~pP 140 (365)
T KOG2391|consen 126 GLIQELIAAFSEDPP 140 (365)
T ss_pred HHHHHHHHHhcCCCc
Confidence 999999999886543
No 30
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.0001 Score=50.83 Aligned_cols=95 Identities=21% Similarity=0.438 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhcCCCCCeEEeecCCCcceeEEEEECCCCCCCCCcE----------EEEEEEecCCCCCCCCeeeEecc
Q 031804 6 RKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGT----------FKLTLQFTEDYPNKPPTVRFVSR 75 (152)
Q Consensus 6 ~~RL~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~gp~~t~y~gg~----------f~~~i~~p~~yP~~pP~v~f~t~ 75 (152)
.+||..||+.+-. +++...++-..|.-.-..++||-|-|.. |.+++.+|-.||...|.|..-.-
T Consensus 29 vqrlkeey~sli~------yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpel 102 (167)
T KOG3357|consen 29 VQRLKEEYQSLIA------YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPEL 102 (167)
T ss_pred HHHHHHHHHHHHH------HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccccccc
Confidence 5799999999875 3444455555676666678899888854 66777789999999999875311
Q ss_pred -CccccccCCCcEeecCc-CCCCC---CcCCHHHHH
Q 031804 76 -MFHPNIYADGSICLDIL-QNQWS---PIYDVAAIL 106 (152)
Q Consensus 76 -i~Hpnv~~~G~vcl~~l-~~~W~---p~~~i~~il 106 (152)
--.--.+..|.||+.-. ..=|. |.++|...+
T Consensus 103 dgktakmyrggkiclt~hfkplwarn~pkfgiaha~ 138 (167)
T KOG3357|consen 103 DGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHAM 138 (167)
T ss_pred CchhhhhhcCceEeeccccchhhhhcCcchhHHHHH
Confidence 01123466899999544 44574 556666543
No 31
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=96.81 E-value=0.0064 Score=40.40 Aligned_cols=68 Identities=13% Similarity=0.156 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCCCCCeEEeecCCCcceeEEEEE--CCCCCCCCCcEEEEEEEecCCCCCCCCeeeEecc
Q 031804 7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIF--GPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR 75 (152)
Q Consensus 7 ~RL~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~--gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~ 75 (152)
.+...|+..|+.--+..+ ......+...+.+.+. ....+.-....+.+.+.||++||..+|.|...+.
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~ 73 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESP 73 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence 466778888876444333 2233444445666662 2234445567899999999999999999987765
No 32
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=96.56 E-value=0.032 Score=38.44 Aligned_cols=89 Identities=18% Similarity=0.346 Sum_probs=58.1
Q ss_pred CeEEeecCCCcceeEEEEEC--CCCCCCCCcEEEEEEEecCCCCCCCCeeeEeccCccccccCCCcE--eecC-------
Q 031804 23 GISGAPQDNNIMLWNAVIFG--PDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSI--CLDI------- 91 (152)
Q Consensus 23 g~~~~~~~~~~~~w~~~i~g--p~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~G~v--cl~~------- 91 (152)
|+..+...+.-..|.+ |.| -+.+.|.+..-.+-|.+|+.||..+|-+.+..+-.... ..|.+ |.+.
T Consensus 13 g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~G~ 89 (122)
T PF14462_consen 13 GLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFDGR 89 (122)
T ss_pred CceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcCCe
Confidence 6666665555556765 545 23447999999999999999999998777765432211 11222 2211
Q ss_pred -------cCCCCCCc-CCHHHHHHHHHHhhc
Q 031804 92 -------LQNQWSPI-YDVAAILTSIQSLLC 114 (152)
Q Consensus 92 -------l~~~W~p~-~~i~~il~~l~~ll~ 114 (152)
....|+|. -+|.+.|..|...|.
T Consensus 90 ~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 90 TWQRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred eeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 13569887 558888888877654
No 33
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=96.42 E-value=0.047 Score=35.85 Aligned_cols=27 Identities=19% Similarity=0.576 Sum_probs=22.7
Q ss_pred CCcEEEEEEEecCCCCCCCCeeeEecc
Q 031804 49 DGGTFKLTLQFTEDYPNKPPTVRFVSR 75 (152)
Q Consensus 49 ~gg~f~~~i~~p~~yP~~pP~v~f~t~ 75 (152)
....+.+.+.+|++||..+|.|.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345689999999999999999987753
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.53 E-value=0.026 Score=40.84 Aligned_cols=60 Identities=23% Similarity=0.429 Sum_probs=47.4
Q ss_pred EEEEecCCCCCCCCeeeEeccCc---cccccCC-----CcEeecCcC-CCCCCcCCHHHHHHHHHHhhc
Q 031804 55 LTLQFTEDYPNKPPTVRFVSRMF---HPNIYAD-----GSICLDILQ-NQWSPIYDVAAILTSIQSLLC 114 (152)
Q Consensus 55 ~~i~~p~~yP~~pP~v~f~t~i~---Hpnv~~~-----G~vcl~~l~-~~W~p~~~i~~il~~l~~ll~ 114 (152)
+.|.|+.+||..+|.|.++-..| +||+... ..+|+---. .+|.+..++..+|..|..-|.
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~ 125 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLR 125 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHH
Confidence 56899999999999887775443 5787655 679985432 579999999999999988775
No 35
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=91.98 E-value=0.67 Score=34.84 Aligned_cols=62 Identities=18% Similarity=0.326 Sum_probs=36.1
Q ss_pred HHHHHHHHhcCCCCCe-EEeecCCCcceeEEEEECCCCC--CCCCcEEEEEEEecCCCCCCCCeeeEe
Q 031804 9 LMRDFKRLQQDPPAGI-SGAPQDNNIMLWNAVIFGPDDT--PWDGGTFKLTLQFTEDYPNKPPTVRFV 73 (152)
Q Consensus 9 L~~E~~~l~~~~~~g~-~~~~~~~~~~~w~~~i~gp~~t--~y~gg~f~~~i~~p~~yP~~pP~v~f~ 73 (152)
...|+..|...-+.-+ .+. +.+.....+.|.-..|. -+.| .+-+.+.++++||.++|.|.+.
T Consensus 7 Qe~E~EaLeSIY~de~~~i~--~~~~~~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~~~ 71 (215)
T KOG4018|consen 7 QEEELEALESIYPDEFKHIN--SEDPPIFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLIEAF 71 (215)
T ss_pred HHHHHHHHHHhccchhhhhh--ccCCccceeeeecccccCCCccc-cEEEEEEccCCCCCCCcceecc
Confidence 4456666665444333 222 22332344555332222 2333 7889999999999999999443
No 36
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=89.36 E-value=0.75 Score=36.39 Aligned_cols=85 Identities=19% Similarity=0.346 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhcCCCCCeEEeecCCCcceeEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCeeeEeccCccccccCCC
Q 031804 6 RKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADG 85 (152)
Q Consensus 6 ~~RL~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~G 85 (152)
..+|.+|+.++..+... .+ ..++++....+.+. -++....++|.++.+||.++|.+..--++
T Consensus 101 ys~ll~EIe~IGW~kl~--~i-~~d~~ls~i~l~~~------D~~R~H~l~l~l~~~yp~~~p~~~~~~P~--------- 162 (291)
T PF09765_consen 101 YSNLLKEIEAIGWDKLV--QI-QFDDDLSTIKLKIF------DSSRQHYLELKLPSNYPFEPPSCSLDLPI--------- 162 (291)
T ss_dssp C-CHHHHHHHHHCGCCE--EE-EE-CCCSEEEEEEE------TTCEEEEEEEETTTTTTTSEEEECS-TTS---------
T ss_pred HHHHHHHHHHhccccce--EE-ecCCCccEEEEEEE------cCCceEEEEEEECCCCCCCCceeeCCCCc---------
Confidence 46788888888765421 22 13667777777775 22257788999999999999976433332
Q ss_pred cEeecCcCCCCCC-cCCHHHHHHHHHHhh
Q 031804 86 SICLDILQNQWSP-IYDVAAILTSIQSLL 113 (152)
Q Consensus 86 ~vcl~~l~~~W~p-~~~i~~il~~l~~ll 113 (152)
.+...|.+ ..++.+++...+..+
T Consensus 163 -----~~~~~w~~~~ssL~~v~~qF~~~l 186 (291)
T PF09765_consen 163 -----PFSLSWSPSQSSLKDVVQQFQEAL 186 (291)
T ss_dssp ------HHHHHHCHT-SHHHHHHHHHHHH
T ss_pred -----chhhhhcccccCHHHHHHHHHHHH
Confidence 11235777 567776666555443
No 37
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=86.17 E-value=1.2 Score=32.46 Aligned_cols=45 Identities=18% Similarity=0.357 Sum_probs=27.4
Q ss_pred eccCcc---ccccCCCcEeecCcCCCCCCcCCHHHHHHHHHHhhcCCCCCC
Q 031804 73 VSRMFH---PNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120 (152)
Q Consensus 73 ~t~i~H---pnv~~~G~vcl~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~ 120 (152)
.|+.|| +||+.+|.||+.... .|.......+....+.|.+....+
T Consensus 89 ~T~Ly~aPf~NV~~~g~vC~G~~~---~P~~~~~~~i~~we~~Ff~S~ftH 136 (175)
T PF14460_consen 89 DTPLYHAPFFNVYSNGSVCWGNNS---LPKISTLASIEAWEDAFFNSPFTH 136 (175)
T ss_pred CCeeEeCCccccCCCCcEeeCCCc---CCCccCHHHHHHHHHHHhCCCccC
Confidence 466777 699999999997642 344444444666655554433333
No 38
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=85.59 E-value=4.1 Score=36.43 Aligned_cols=67 Identities=18% Similarity=0.315 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhcCCCCCeEEeecCCCcceeEEEEECCCCCCCCCcEE-EEEEEecCCCCCC-CCeeeEecc
Q 031804 7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTF-KLTLQFTEDYPNK-PPTVRFVSR 75 (152)
Q Consensus 7 ~RL~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f-~~~i~~p~~yP~~-pP~v~f~t~ 75 (152)
+-|.+|+.-+-..- +++.++-.+-.-..-.+.+.+|... -.|.+| ++.|.||.+||.+ +|.++|..+
T Consensus 423 QnLgeE~S~Ig~k~-~nV~fEkidva~Rsctvsln~p~~~-~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 423 QNLGEEFSLIGVKI-RNVNFEKIDVADRSCTVSLNCPNHR-VDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhHHhHHhHhhccc-cccceEeeccccceEEEEecCCCCc-cccceeEEEEEeccccCCCCCCCceEEecC
Confidence 44666666664322 2344443344445667778777653 355555 8999999999996 799999854
No 39
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=81.57 E-value=9.3 Score=30.84 Aligned_cols=66 Identities=24% Similarity=0.490 Sum_probs=45.7
Q ss_pred cceeEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCeeeEe-ccCccccccCCCcEeecCcCCCCCCc--CCHHHHHHHH
Q 031804 33 IMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFV-SRMFHPNIYADGSICLDILQNQWSPI--YDVAAILTSI 109 (152)
Q Consensus 33 ~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~-t~i~Hpnv~~~G~vcl~~l~~~W~p~--~~i~~il~~l 109 (152)
.....+.| ||.|...+-+|.|...||..||-+.|- ..-|+|-.+. +..| .+|.+. -.+..++..|
T Consensus 53 ~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s~-----l~~L-~~Wd~~dp~~Ll~li~EL 120 (333)
T PF06113_consen 53 CDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPSK-----LPSL-VNWDPSDPNCLLNLISEL 120 (333)
T ss_pred cceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChhh-----cchh-hcCCCCCchHHHHHHHHH
Confidence 34566666 899999999999999999999999996 4458884321 1122 568765 3355555544
Q ss_pred H
Q 031804 110 Q 110 (152)
Q Consensus 110 ~ 110 (152)
.
T Consensus 121 ~ 121 (333)
T PF06113_consen 121 R 121 (333)
T ss_pred H
Confidence 3
No 40
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=80.17 E-value=3.2 Score=31.71 Aligned_cols=42 Identities=17% Similarity=0.400 Sum_probs=28.5
Q ss_pred ccCcc---ccccCCCcEeecCcCCCCCCc-CCHHHHHHHHHHhhcCCCCC
Q 031804 74 SRMFH---PNIYADGSICLDILQNQWSPI-YDVAAILTSIQSLLCDPNPN 119 (152)
Q Consensus 74 t~i~H---pnv~~~G~vcl~~l~~~W~p~-~~i~~il~~l~~ll~~p~~~ 119 (152)
|+.|| +||+.+|+||+.... .|. .++.+ +....+.|.+-.+.
T Consensus 131 T~L~~aPffNV~~~G~VC~G~~~---~P~~~~~~~-i~~we~~FF~S~FT 176 (228)
T TIGR03737 131 TKLYQAPLFNVWSNGEICAGNAR---LPDRPTVAN-ISAWEDAFFSSRFT 176 (228)
T ss_pred CeeccCCcCccCCCCeEeeCCCc---CCCCcCHHH-HHHHHHHHhCCccc
Confidence 55666 599999999997653 555 55666 77776766654443
No 41
>PRK05414 urocanate hydratase; Provisional
Probab=67.04 E-value=15 Score=31.52 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=25.4
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHhhhcC
Q 031804 124 SEAARMFSENKREYNRRVREIVEQSWTAD 152 (152)
Q Consensus 124 ~~a~~~~~~~~~~f~~~~r~~~~~~~~~~ 152 (152)
.|+..+-.+|++.|.+.|++++.++.+.|
T Consensus 282 ee~~~lr~~dp~~~~~~~~~Sm~rhv~Am 310 (556)
T PRK05414 282 EEAAELRAEDPEEFVKAAKASMARHVEAM 310 (556)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 57888889999999999999999887654
No 42
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=61.90 E-value=12 Score=26.36 Aligned_cols=25 Identities=24% Similarity=0.671 Sum_probs=22.5
Q ss_pred CCcEEEEEEEecCCCC-CCCCeeeEe
Q 031804 49 DGGTFKLTLQFTEDYP-NKPPTVRFV 73 (152)
Q Consensus 49 ~gg~f~~~i~~p~~yP-~~pP~v~f~ 73 (152)
+.|.|.|.-.+|-.|| ..||.|.|.
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 3589999999999999 999999886
No 43
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=59.24 E-value=23 Score=30.01 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=25.7
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHhhhcC
Q 031804 124 SEAARMFSENKREYNRRVREIVEQSWTAD 152 (152)
Q Consensus 124 ~~a~~~~~~~~~~f~~~~r~~~~~~~~~~ 152 (152)
.|+.++-.+|+++|.+.|++..+++.+.|
T Consensus 282 ee~~~lr~~d~~~~~~~a~~sm~~hv~Am 310 (561)
T COG2987 282 EEADELREEDPDKYRKLARASMARHVEAM 310 (561)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence 57888889999999999999999988765
No 44
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=57.94 E-value=14 Score=27.26 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=22.6
Q ss_pred CCcEEEEEEEecCCCCCCCCeeeEe
Q 031804 49 DGGTFKLTLQFTEDYPNKPPTVRFV 73 (152)
Q Consensus 49 ~gg~f~~~i~~p~~yP~~pP~v~f~ 73 (152)
+.|.|.|.=.+|--||.++|.|.|.
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~ 109 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFK 109 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEE
Confidence 4588999999999999999999887
No 45
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=54.42 E-value=17 Score=31.19 Aligned_cols=29 Identities=28% Similarity=0.389 Sum_probs=25.0
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHhhhcC
Q 031804 124 SEAARMFSENKREYNRRVREIVEQSWTAD 152 (152)
Q Consensus 124 ~~a~~~~~~~~~~f~~~~r~~~~~~~~~~ 152 (152)
.|+.++..+|++.|.+.|++++.++.+.|
T Consensus 272 eea~~l~~~dp~~~~~~v~~Sl~rhv~Am 300 (546)
T PF01175_consen 272 EEANELRAEDPEEFKERVQESLARHVEAM 300 (546)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence 57788889999999999999999887654
No 46
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=53.20 E-value=15 Score=27.34 Aligned_cols=31 Identities=19% Similarity=0.410 Sum_probs=24.5
Q ss_pred CCcEeecCcCCCCCCcCCHHHHHHHHHHhhc
Q 031804 84 DGSICLDILQNQWSPIYDVAAILTSIQSLLC 114 (152)
Q Consensus 84 ~G~vcl~~l~~~W~p~~~i~~il~~l~~ll~ 114 (152)
.+.+|++++...|+|.+|+...+.-++.++.
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv~ 165 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDLMKKCVL 165 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHHHHHHHH
Confidence 4679999999999999998877766554443
No 47
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=53.03 E-value=18 Score=30.86 Aligned_cols=30 Identities=13% Similarity=0.218 Sum_probs=25.7
Q ss_pred CHHHHHHHHHCHHHHHHHHHHHHHHhhhcC
Q 031804 123 NSEAARMFSENKREYNRRVREIVEQSWTAD 152 (152)
Q Consensus 123 n~~a~~~~~~~~~~f~~~~r~~~~~~~~~~ 152 (152)
-.|+.++-.+|+++|.+.|++++.++.+.|
T Consensus 272 ~ee~~~lr~~dp~~~~~~~~~Sm~rhv~Am 301 (545)
T TIGR01228 272 VEDADKLRQEEPEAYVKAAKQSMAKHVRAM 301 (545)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 357888889999999999999999887654
No 48
>smart00340 HALZ homeobox associated leucin zipper.
Probab=50.47 E-value=20 Score=19.89 Aligned_cols=15 Identities=20% Similarity=0.432 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhcC
Q 031804 5 ARKRLMRDFKRLQQD 19 (152)
Q Consensus 5 a~~RL~~E~~~l~~~ 19 (152)
..+||++|+.+|+..
T Consensus 20 eNrRL~ke~~eLral 34 (44)
T smart00340 20 ENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHhc
Confidence 468999999998864
No 49
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=49.35 E-value=25 Score=25.25 Aligned_cols=25 Identities=16% Similarity=0.444 Sum_probs=22.0
Q ss_pred CCcEEEEEEEecCCCC-----CCCCeeeEe
Q 031804 49 DGGTFKLTLQFTEDYP-----NKPPTVRFV 73 (152)
Q Consensus 49 ~gg~f~~~i~~p~~yP-----~~pP~v~f~ 73 (152)
+.|.|.|.-.+|--|| ..||.|.|.
T Consensus 71 ~~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~ 100 (158)
T cd03459 71 ADGRYRFRTIKPGAYPWRNGAWRAPHIHVS 100 (158)
T ss_pred CCCcEEEEEECCCCcCCCCCCCcCCEEEEE
Confidence 3488999999999999 899999886
No 50
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=45.58 E-value=47 Score=21.21 Aligned_cols=26 Identities=12% Similarity=0.288 Sum_probs=21.4
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHHhhh
Q 031804 125 EAARMFSENKREYNRRVREIVEQSWT 150 (152)
Q Consensus 125 ~a~~~~~~~~~~f~~~~r~~~~~~~~ 150 (152)
+...++++|+++|.+..++.+++-++
T Consensus 8 ~L~~LA~~dPe~fe~lr~~~~ee~I~ 33 (83)
T PF11333_consen 8 ELKELAQNDPEAFEQLRQELIEEMIE 33 (83)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 46678899999999999988886654
No 51
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=44.44 E-value=80 Score=20.06 Aligned_cols=43 Identities=21% Similarity=0.345 Sum_probs=29.0
Q ss_pred ceeEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCeeeEeccCcc
Q 031804 34 MLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFH 78 (152)
Q Consensus 34 ~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~H 78 (152)
..|.+.+.|+.+..-..-+=++...+.+.|+. |...+..+.|.
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPFe 44 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPFE 44 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTEE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCCE
Confidence 47999999988865455556788888888875 66666666544
No 52
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=43.54 E-value=24 Score=26.55 Aligned_cols=55 Identities=27% Similarity=0.438 Sum_probs=43.9
Q ss_pred CCCCeeeEeccCcccccc--CCCcEeecCcCCCC--CCcCCHHHHHHHHHHhhcCCCCC
Q 031804 65 NKPPTVRFVSRMFHPNIY--ADGSICLDILQNQW--SPIYDVAAILTSIQSLLCDPNPN 119 (152)
Q Consensus 65 ~~pP~v~f~t~i~Hpnv~--~~G~vcl~~l~~~W--~p~~~i~~il~~l~~ll~~p~~~ 119 (152)
..||-|.|-.+.|...|+ +.|.|-..+...+| .|..++.+-|..|..+|-.|+.+
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed 225 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTED 225 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCccc
Confidence 478999999999999987 56766666666777 58888999999988888777643
No 53
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=41.24 E-value=35 Score=27.61 Aligned_cols=23 Identities=22% Similarity=0.571 Sum_probs=20.2
Q ss_pred EEEEEEEecCCCCCCCCeeeEec
Q 031804 52 TFKLTLQFTEDYPNKPPTVRFVS 74 (152)
Q Consensus 52 ~f~~~i~~p~~yP~~pP~v~f~t 74 (152)
.|-+.|.+|..||...|.++|.+
T Consensus 307 ~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 307 TFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred EEEEEEeccCCCCCcCCeEEEEe
Confidence 36677889999999999999986
No 54
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=37.73 E-value=55 Score=25.66 Aligned_cols=31 Identities=26% Similarity=0.265 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHCHHHHHHHHHHHHHHhhh
Q 031804 120 SPANSEAARMFSENKREYNRRVREIVEQSWT 150 (152)
Q Consensus 120 ~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 150 (152)
.-.+++|+..|..|++.|...+.+.++++.+
T Consensus 237 ~F~s~~aa~~F~~~P~~yi~~v~~~ar~~pe 267 (281)
T PF12018_consen 237 AFSSREAAYRFAEDPERYIQAVLEKARKNPE 267 (281)
T ss_pred EeCCHHHHHHHHHCHHHHHHHHHHHHhhCHH
Confidence 3478999999999999999999999988754
No 55
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=36.80 E-value=1.2e+02 Score=22.92 Aligned_cols=70 Identities=13% Similarity=0.291 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEeecCCCcceeEEEEECCCCCCCCCcEEEEEEEecCCC-------------------C
Q 031804 4 PARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDY-------------------P 64 (152)
Q Consensus 4 ~a~~RL~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~y-------------------P 64 (152)
++..||.+.++++++.. .+...-|.+.+....+.-|.| |.|.++|.++= -
T Consensus 9 s~~eR~~e~~~~~k~~L---------~~a~~GW~~~yyp~~~~~~GG--y~f~~kF~~~~~Vtm~sd~~~~~~~~tS~Y~ 77 (235)
T PF14135_consen 9 SPAERINEALAEYKKIL---------TSAPNGWKLEYYPKTDQSYGG--YTFLMKFDDDGKVTMASDFDSASTPSTSSYR 77 (235)
T ss_pred CHHHHHHHHHHHHHHHH---------hcCCCceEEEEECCCCccCCc--EEEEEEECCCCeEEEEEccCCCCceeeEEEE
Confidence 46789988777777631 223334777776434322333 77777776543 1
Q ss_pred ---CCCCeeeEec--cCccccccCC
Q 031804 65 ---NKPPTVRFVS--RMFHPNIYAD 84 (152)
Q Consensus 65 ---~~pP~v~f~t--~i~Hpnv~~~ 84 (152)
..-|.+.|.| ++.|-..+++
T Consensus 78 ~~~~~gp~LsFdTyN~~iH~~s~p~ 102 (235)
T PF14135_consen 78 LKQDQGPVLSFDTYNEYIHYFSDPS 102 (235)
T ss_pred EecCCceEEEEEeCCceEEEccCCC
Confidence 2238888875 3677655543
No 56
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=36.65 E-value=45 Score=26.78 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=21.7
Q ss_pred cEEEEEEEecCCCCCCCCeeeEecc
Q 031804 51 GTFKLTLQFTEDYPNKPPTVRFVSR 75 (152)
Q Consensus 51 g~f~~~i~~p~~yP~~pP~v~f~t~ 75 (152)
-.+.+.+..++.||...|.|+...+
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 3567889999999999999999866
No 57
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=35.96 E-value=95 Score=24.16 Aligned_cols=48 Identities=25% Similarity=0.488 Sum_probs=31.8
Q ss_pred CCcceeEEEEECCCCCCCCC---cEEEEEEEec-----CCCCCCCCeeeEeccCcc
Q 031804 31 NNIMLWNAVIFGPDDTPWDG---GTFKLTLQFT-----EDYPNKPPTVRFVSRMFH 78 (152)
Q Consensus 31 ~~~~~w~~~i~gp~~t~y~g---g~f~~~i~~p-----~~yP~~pP~v~f~t~i~H 78 (152)
.|..-|.+....-......| ..|+..+++. -|-||+||+|..+++-|.
T Consensus 100 KDp~PWkl~YrV~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~ft 155 (276)
T PF00845_consen 100 KDPIPWKLYYRVEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQFT 155 (276)
T ss_pred CCCCCeEEEEEeecCccccceeeeeeeceeeecccccccccccCCCceEeeecccC
Confidence 34456777775444334444 2356666665 688999999999988664
No 58
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=35.77 E-value=50 Score=24.53 Aligned_cols=25 Identities=16% Similarity=0.425 Sum_probs=20.9
Q ss_pred CCcEEEEEEEecCCCCC-----CCCeeeEe
Q 031804 49 DGGTFKLTLQFTEDYPN-----KPPTVRFV 73 (152)
Q Consensus 49 ~gg~f~~~i~~p~~yP~-----~pP~v~f~ 73 (152)
+.|.|.|.-..|-.||. .||.|.|.
T Consensus 95 ~~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 95 ESGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 34789999999999998 88888775
No 59
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=35.46 E-value=86 Score=20.36 Aligned_cols=26 Identities=12% Similarity=0.189 Sum_probs=20.7
Q ss_pred CCCcEEEEEEEecCCCCCCCCeeeEecc
Q 031804 48 WDGGTFKLTLQFTEDYPNKPPTVRFVSR 75 (152)
Q Consensus 48 y~gg~f~~~i~~p~~yP~~pP~v~f~t~ 75 (152)
-+|..+.+...-|..|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 46778888888889999 588888854
No 60
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=33.71 E-value=58 Score=24.03 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=19.7
Q ss_pred CcEEEEEEEecCCCCC-----CCCeeeEe
Q 031804 50 GGTFKLTLQFTEDYPN-----KPPTVRFV 73 (152)
Q Consensus 50 gg~f~~~i~~p~~yP~-----~pP~v~f~ 73 (152)
.|.|.|.-.+|--||. .||.|.|.
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 3789999999999995 77777665
No 61
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=32.05 E-value=49 Score=28.81 Aligned_cols=29 Identities=24% Similarity=0.597 Sum_probs=24.2
Q ss_pred CCCCCcEEEEEEEecCCCCC---CCCeeeEecc
Q 031804 46 TPWDGGTFKLTLQFTEDYPN---KPPTVRFVSR 75 (152)
Q Consensus 46 t~y~gg~f~~~i~~p~~yP~---~pP~v~f~t~ 75 (152)
+||.=|.|.+.| +|++||+ +-|-++|+|+
T Consensus 248 GpY~WgryDllv-lPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDLLV-LPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceEEE-ecCCCCcccccCcceeeecc
Confidence 578889998754 8999997 4699999987
No 62
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=31.00 E-value=86 Score=18.58 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=19.3
Q ss_pred CCCHHHHHHHHHCHHHHHHHHH
Q 031804 121 PANSEAARMFSENKREYNRRVR 142 (152)
Q Consensus 121 p~n~~a~~~~~~~~~~f~~~~r 142 (152)
..|++.+.+..+|+++|.+...
T Consensus 33 ~~nP~l~q~I~~n~e~Fl~ll~ 54 (59)
T PF09280_consen 33 QSNPQLLQLIQQNPEEFLRLLN 54 (59)
T ss_dssp CCSHHHHHHHHHTHHHHHHHHH
T ss_pred ccCHHHHHHHHHCHHHHHHHHc
Confidence 4789999999999999998754
No 63
>PF14455 Metal_CEHH: Predicted metal binding domain
Probab=29.27 E-value=1.3e+02 Score=21.69 Aligned_cols=65 Identities=20% Similarity=0.359 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhcCC----CCCeEEeecCCCcceeEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCeeeEecc
Q 031804 7 KRLMRDFKRLQQDP----PAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR 75 (152)
Q Consensus 7 ~RL~~E~~~l~~~~----~~g~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~ 75 (152)
+..-+|...+.... -.|+.+. +.+.-...+.+..|+-.| .--.-.+++.|. ||-..||.|.|+.+
T Consensus 8 akFdR~V~~~~~~~~a~r~rgwfLi--qa~fP~~~~iF~~~kvaP-~~~~~~lr~d~~-n~Dl~PPSV~fvDp 76 (177)
T PF14455_consen 8 AKFDRQVGRFRPRADAYRMRGWFLI--QASFPTADVIFAAPKVAP-RSIGLRLRFDFT-NWDLRPPSVVFVDP 76 (177)
T ss_pred HHHHHHHhhhhhhhhHhhhcCeEEE--EccCceEEEEeeCCccCc-cccceEEEEecc-ccCcCCCceEEecc
Confidence 34455665555432 1355544 333334445443344443 222245566665 59999999999976
No 64
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=28.67 E-value=45 Score=19.94 Aligned_cols=14 Identities=21% Similarity=0.577 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhc
Q 031804 5 ARKRLMRDFKRLQQ 18 (152)
Q Consensus 5 a~~RL~~E~~~l~~ 18 (152)
-.+||++|++++--
T Consensus 35 Dr~rL~kEL~d~D~ 48 (59)
T PF12065_consen 35 DRQRLRKELQDMDM 48 (59)
T ss_pred HHHHHHHHHHHccc
Confidence 36899999998853
No 65
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=27.45 E-value=21 Score=18.54 Aligned_cols=15 Identities=27% Similarity=0.899 Sum_probs=8.9
Q ss_pred CccccccCCCc-Eeec
Q 031804 76 MFHPNIYADGS-ICLD 90 (152)
Q Consensus 76 i~Hpnv~~~G~-vcl~ 90 (152)
.|||.++.+|+ .|..
T Consensus 2 ~yHPg~~~~g~W~CC~ 17 (32)
T PF00779_consen 2 KYHPGAWRGGKWLCCK 17 (32)
T ss_dssp EE-SS-EETTCESSSS
T ss_pred CcCCCcccCCcCcCCC
Confidence 48999997776 5553
No 66
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=27.08 E-value=91 Score=24.45 Aligned_cols=29 Identities=14% Similarity=0.480 Sum_probs=25.8
Q ss_pred CCCCCcEEEEEEEecCCCCCCC--CeeeEec
Q 031804 46 TPWDGGTFKLTLQFTEDYPNKP--PTVRFVS 74 (152)
Q Consensus 46 t~y~gg~f~~~i~~p~~yP~~p--P~v~f~t 74 (152)
+.+.|..|++.|..|.+||-.- |.|.|+.
T Consensus 16 s~~~~~~yri~i~~P~~~~~~~~YpVlY~lD 46 (264)
T COG2819 16 SANTGRKYRIFIATPKNYPKPGGYPVLYMLD 46 (264)
T ss_pred ecCCCcEEEEEecCCCCCCCCCCCcEEEEec
Confidence 4688999999999999999887 9999984
No 67
>PRK15486 hpaC 4-hydroxyphenylacetate 3-monooxygenase reductase subunit; Provisional
Probab=26.48 E-value=43 Score=24.27 Aligned_cols=69 Identities=17% Similarity=0.328 Sum_probs=43.0
Q ss_pred HHHHHHHHhcCCCCCeEEeecCCCcceeEEEEECCCCCCCCCcEEEEEEEecCCCCCCCCeeeEe---ccCccccccCCC
Q 031804 9 LMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFV---SRMFHPNIYADG 85 (152)
Q Consensus 9 L~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~---t~i~Hpnv~~~G 85 (152)
+..++++....-+.|++|....++ +.+ .|-+-.-...+. .+||.|-+- +..-|+-+..+|
T Consensus 6 ~~~~fr~am~~~a~GV~VVTt~~~------------~~~-~G~Tvss~~SvS----ldPPlvlv~l~~~s~~~~~i~~sg 68 (170)
T PRK15486 6 QRLRFRDAMASLSAAVNIVTTAGD------------AGR-CGITATAVCSVT----DTPPSVMVCINANSAMNPVFQGNG 68 (170)
T ss_pred hHHHHHHHHhccCCceEEEEEecC------------CCc-EEEEEEEEEEeE----cCCCEEEEEECCCCchhHHHHhCC
Confidence 345678888888888886643211 111 222222222222 368999875 346788999999
Q ss_pred cEeecCcCC
Q 031804 86 SICLDILQN 94 (152)
Q Consensus 86 ~vcl~~l~~ 94 (152)
.+|+++|.+
T Consensus 69 ~F~VnvL~~ 77 (170)
T PRK15486 69 KLCINVLNH 77 (170)
T ss_pred eEEEEEChh
Confidence 999999953
No 68
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=26.06 E-value=86 Score=24.84 Aligned_cols=25 Identities=24% Similarity=0.529 Sum_probs=20.8
Q ss_pred CCcEEEEEEEecCCCC------------------CCCCeeeEe
Q 031804 49 DGGTFKLTLQFTEDYP------------------NKPPTVRFV 73 (152)
Q Consensus 49 ~gg~f~~~i~~p~~yP------------------~~pP~v~f~ 73 (152)
+.|.|.|.-..|.-|| ..||.|.|.
T Consensus 179 ~~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 221 (285)
T TIGR02439 179 AEGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFF 221 (285)
T ss_pred CCCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEE
Confidence 3488999999999997 678888876
No 69
>TIGR02296 HpaC 4-hydroxyphenylacetate 3-monooxygenase, reductase component. These reductases catalyze the reduction of free flavins by NADPH. The flavin is then utilized by the large subunit of the monooxygenase.
Probab=25.96 E-value=38 Score=23.96 Aligned_cols=30 Identities=27% Similarity=0.722 Sum_probs=24.5
Q ss_pred CCCCeeeEe---ccCccccccCCCcEeecCcCC
Q 031804 65 NKPPTVRFV---SRMFHPNIYADGSICLDILQN 94 (152)
Q Consensus 65 ~~pP~v~f~---t~i~Hpnv~~~G~vcl~~l~~ 94 (152)
.+||.|-+- ...-|+.|..+|.+|+++|.+
T Consensus 36 ~~PP~v~v~l~~~s~t~~~i~~~g~F~VnvL~~ 68 (154)
T TIGR02296 36 DTPPTVMVCINRNSAMNPIFQENGKLCINVLAH 68 (154)
T ss_pred cCCCEEEEEECCCCchhHHHHhCCeEEEEECcH
Confidence 479999885 345689999999999999853
No 70
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=24.41 E-value=71 Score=18.96 Aligned_cols=18 Identities=17% Similarity=0.573 Sum_probs=11.8
Q ss_pred CCCCcCCHHHHHHHHHHh
Q 031804 95 QWSPIYDVAAILTSIQSL 112 (152)
Q Consensus 95 ~W~p~~~i~~il~~l~~l 112 (152)
+|.|.++|.+++.....-
T Consensus 37 gW~p~~~L~~~i~~~w~W 54 (62)
T PF13950_consen 37 GWKPKYSLEDMIRDAWNW 54 (62)
T ss_dssp ----SSSHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHH
Confidence 699999999999887653
No 71
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=23.71 E-value=1e+02 Score=24.35 Aligned_cols=25 Identities=20% Similarity=0.596 Sum_probs=21.1
Q ss_pred CCcEEEEEEEecCCCC------------------CCCCeeeEe
Q 031804 49 DGGTFKLTLQFTEDYP------------------NKPPTVRFV 73 (152)
Q Consensus 49 ~gg~f~~~i~~p~~yP------------------~~pP~v~f~ 73 (152)
+.|.|.|.-..|.-|| ..||.|.|.
T Consensus 171 ~~G~y~F~Ti~Pg~Ypip~dGp~g~lL~~~grh~~RpaHIHf~ 213 (277)
T cd03461 171 EDGRYAFRTLRPTPYPIPTDGPVGKLLKAMGRHPMRPAHIHFM 213 (277)
T ss_pred CCCCEEEEEECCCCcCCCCCCcHHHHHHhhhccCCCCCeEEEE
Confidence 3588999999999998 578888876
No 72
>PHA03200 uracil DNA glycosylase; Provisional
Probab=23.63 E-value=1.3e+02 Score=23.49 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=21.5
Q ss_pred cceeEEEEECCCCCCCCCcEEEE-EEEecCCCCCCCCeee
Q 031804 33 IMLWNAVIFGPDDTPWDGGTFKL-TLQFTEDYPNKPPTVR 71 (152)
Q Consensus 33 ~~~w~~~i~gp~~t~y~gg~f~~-~i~~p~~yP~~pP~v~ 71 (152)
+....|+|.|-+ ||.||.=+. -...+++++. ||..+
T Consensus 82 ~~~vKVVIlGQD--PYh~gqA~GLaFSV~~~~~~-PpSL~ 118 (255)
T PHA03200 82 PEDVKVVIVGQD--PYHDGSACGLAFGTVRGRSA-PPSLK 118 (255)
T ss_pred hhheEEEEEecC--CCCCCccceEEEEeCCCCCC-CccHH
Confidence 345789998866 777754332 2344666653 66653
No 73
>TIGR03615 RutF pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.
Probab=23.03 E-value=48 Score=23.48 Aligned_cols=31 Identities=26% Similarity=0.570 Sum_probs=25.1
Q ss_pred CCCCCeeeEe---ccCccccccCCCcEeecCcCC
Q 031804 64 PNKPPTVRFV---SRMFHPNIYADGSICLDILQN 94 (152)
Q Consensus 64 P~~pP~v~f~---t~i~Hpnv~~~G~vcl~~l~~ 94 (152)
-.+||.+.|. +..-|+.+..+|.+++++|.+
T Consensus 40 S~~PP~v~v~l~~~s~t~~~i~~s~~F~VnvL~~ 73 (156)
T TIGR03615 40 TDTPPTLLVCLNRSASAYPAFKQNGTLCVNTLAA 73 (156)
T ss_pred cCCCCEEEEEeCCCcchhHHHHhCCeEEEEECcH
Confidence 3589999886 445688999999999999853
No 74
>COG1343 CRISPR-associated protein Cas2 [Defense mechanisms]
Probab=22.19 E-value=2.3e+02 Score=18.31 Aligned_cols=45 Identities=16% Similarity=0.335 Sum_probs=30.0
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCeEEeecCCCcceeEEEEECCCCC
Q 031804 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDT 46 (152)
Q Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~gp~~t 46 (152)
|++....+|.+++..+.......+.+.+...+... .....|++++
T Consensus 39 l~~~~~~~l~~~~~kii~~~~Dsi~iy~~~~~~~~-~~~~iG~~~~ 83 (89)
T COG1343 39 LTPADLEKLKRRLKKIIDEDEDSIRIYPLRRRAAR-TREVIGPEKS 83 (89)
T ss_pred cCHHHHHHHHHHHHhhhccccceEEEEEccchhhc-cceeccCCCC
Confidence 35567888999999998777777777776655432 2233466653
No 75
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=22.14 E-value=1.1e+02 Score=24.11 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=20.3
Q ss_pred CCcEEEEEEEecCCCC------------------CCCCeeeEe
Q 031804 49 DGGTFKLTLQFTEDYP------------------NKPPTVRFV 73 (152)
Q Consensus 49 ~gg~f~~~i~~p~~yP------------------~~pP~v~f~ 73 (152)
+.|.|.|.-..|..|| ..||.|.|.
T Consensus 183 adG~y~F~TI~Pg~YpiP~dGp~G~lL~~~Grh~~RpaHIHf~ 225 (281)
T TIGR02438 183 DEGRFEITTMQPAPYQIPTDGPTGKFIAAAGGHPWRPAHLHLK 225 (281)
T ss_pred CCCCEEEEEECCCCcCCCCCCchHHHHHhcccCCCCCCEEEEE
Confidence 3588999999998887 578888776
No 76
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=22.05 E-value=1.2e+02 Score=24.11 Aligned_cols=25 Identities=20% Similarity=0.599 Sum_probs=20.4
Q ss_pred CCcEEEEEEEecCCCC------------------CCCCeeeEe
Q 031804 49 DGGTFKLTLQFTEDYP------------------NKPPTVRFV 73 (152)
Q Consensus 49 ~gg~f~~~i~~p~~yP------------------~~pP~v~f~ 73 (152)
+.|.|.|.-..|.-|| ..||.|.|.
T Consensus 175 ~~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 217 (282)
T cd03460 175 ADGRYRFRSIMPSGYGVPPGGPTQQLLNALGRHGNRPAHIHFF 217 (282)
T ss_pred CCCCEEEEEECCCCCcCCCCCcHHHHHHhhcCCCCCCCeEEEE
Confidence 3588999999999996 578888775
No 77
>cd05777 DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase delta, a family-B DNA polymerase. The 3'-5' exonuclease domain of eukaryotic DNA polymerase delta. DNA polymerase delta is a family-B DNA polymerase with a catalytic subunit that contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain. It is one of the three DNA-dependent type B DNA polymerases (alpha and epsilon are the other two) that have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase delta is the enzyme responsible for both elongation and maturation of Okazaki fragments on the lagging strand. It is also implicated in mismatch repair (MMR) and base excision repair (BER). The catalytic subunit displays both polymerase and 3'-5' exonuclease activities. The exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic
Probab=21.58 E-value=2.9e+02 Score=20.68 Aligned_cols=63 Identities=14% Similarity=0.199 Sum_probs=40.1
Q ss_pred cCCCcEeecCcC---CCC-CCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHh
Q 031804 82 YADGSICLDILQ---NQW-SPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 148 (152)
Q Consensus 82 ~~~G~vcl~~l~---~~W-~p~~~i~~il~~l~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~ 148 (152)
.-.|++++|+.. ..+ .+++++..|...+- ..... +.--.++.++|..+++...+.++.+++.+
T Consensus 147 ~i~GR~~iD~~~~~~~~~kl~sy~L~~Va~~~L---g~~k~-d~~~~~i~~~~~~~~~~~~~l~~Y~~~Da 213 (230)
T cd05777 147 NIEGRIQFDLLQVIQRDYKLRSYSLNSVSAHFL---GEQKE-DVHYSIITDLQNGNPETRRRLAVYCLKDA 213 (230)
T ss_pred EEcCEEeeeHHHHHHHhcCcccCcHHHHHHHHh---CCCCC-CCCHHHHHHHHccCHhHhHHHHHhhHHHH
Confidence 456999998773 234 34577777655433 22221 22224677788888888888888888754
No 78
>PF11745 DUF3304: Protein of unknown function (DUF3304); InterPro: IPR021733 This is a family of bacterial proteins of unknown function.
Probab=21.55 E-value=51 Score=22.26 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=16.3
Q ss_pred CCCcEeecCcCCCCCCcCCHH
Q 031804 83 ADGSICLDILQNQWSPIYDVA 103 (152)
Q Consensus 83 ~~G~vcl~~l~~~W~p~~~i~ 103 (152)
..|.+|.-.+...|+|.+++.
T Consensus 49 GGg~~CC~~~p~~W~pg~tv~ 69 (118)
T PF11745_consen 49 GGGFTCCVSLPRKWRPGLTVK 69 (118)
T ss_pred CCceEEEEEcCCCCCCCCEEE
Confidence 455678888889999998754
No 79
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=21.46 E-value=96 Score=19.94 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHhc
Q 031804 3 TPARKRLMRDFKRLQQ 18 (152)
Q Consensus 3 ~~a~~RL~~E~~~l~~ 18 (152)
+.+.+||.+|+....+
T Consensus 6 t~~vkRL~KE~~~Y~k 21 (90)
T PF02970_consen 6 TGVVKRLLKEEASYEK 21 (90)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3567888888766543
No 80
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=21.24 E-value=1.8e+02 Score=23.60 Aligned_cols=39 Identities=23% Similarity=0.556 Sum_probs=27.9
Q ss_pred eeEEEEECCCCC-CCCCcEEEEEEEec--CCCCCCCCeeeEe
Q 031804 35 LWNAVIFGPDDT-PWDGGTFKLTLQFT--EDYPNKPPTVRFV 73 (152)
Q Consensus 35 ~w~~~i~gp~~t-~y~gg~f~~~i~~p--~~yP~~pP~v~f~ 73 (152)
.|...|.|-+++ -|++|.+++++.-. ++--.+-|+|||-
T Consensus 198 h~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRfG 239 (345)
T COG3866 198 HDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFG 239 (345)
T ss_pred CCeeeeeccCCcccccCCceeEEEeccccccccccCCceEee
Confidence 688899997766 78899998887622 2223356799985
No 81
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=21.23 E-value=1.3e+02 Score=22.94 Aligned_cols=24 Identities=21% Similarity=0.538 Sum_probs=20.3
Q ss_pred CcEEEEEEEecCCCCC-------CCCeeeEe
Q 031804 50 GGTFKLTLQFTEDYPN-------KPPTVRFV 73 (152)
Q Consensus 50 gg~f~~~i~~p~~yP~-------~pP~v~f~ 73 (152)
.|.|.|.-..|--||. .||.|.|.
T Consensus 122 ~G~y~F~TI~Pg~Yp~p~~r~~~RppHIH~~ 152 (220)
T cd03464 122 DGYYRFRTIKPGAYPWGNHPNAWRPAHIHFS 152 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 5889999999999964 78988885
No 82
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=20.30 E-value=2e+02 Score=21.29 Aligned_cols=41 Identities=15% Similarity=0.283 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEeecCCCcceeEEEEECCC
Q 031804 4 PARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPD 44 (152)
Q Consensus 4 ~a~~RL~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~gp~ 44 (152)
-..+|+++|++.+.+.--..++..|.-+..-...+.+..-.
T Consensus 119 k~~~~iq~EIraviRQItasVtfLP~Le~~ctFdvLiyTdk 159 (203)
T KOG3285|consen 119 KDLKRIQNEIRAVIRQITASVTFLPLLEEICTFDVLIYTDK 159 (203)
T ss_pred hHHHHHHHHHHHHHHHHhhheeecccccceeEEEEEEEeCC
Confidence 35789999999999987777777776666666777765433
No 83
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=20.04 E-value=4.8e+02 Score=22.73 Aligned_cols=81 Identities=23% Similarity=0.459 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHHHhcCCCCCeEEeecCCCc----------ceeEEEEECCCCCCCCCcEEEEEEEe--cCCC-CC-CCC
Q 031804 3 TPARKRLMRDFKRLQQDPPAGISGAPQDNNI----------MLWNAVIFGPDDTPWDGGTFKLTLQF--TEDY-PN-KPP 68 (152)
Q Consensus 3 ~~a~~RL~~E~~~l~~~~~~g~~~~~~~~~~----------~~w~~~i~gp~~t~y~gg~f~~~i~~--p~~y-P~-~pP 68 (152)
-....||.+=+++..-..|++-++.|..+++ -+|..++..++. .|.|+-|-+++-+ .-+- |. ++=
T Consensus 294 ~~~~~~l~~~~~~~~~~~pp~~~lspige~~i~~gl~~~~~p~f~~~~tr~p~-~y~g~pfiVE~~iayGg~~~~~~~~~ 372 (535)
T PRK04184 294 REELERLVEAFKKYKFMAPPTACLSPIGEELIEKGLKKILKPEFVAAVTRKPK-VYSGHPFIVEVGIAYGGEIPPDDKPE 372 (535)
T ss_pred HHHHHHHHHHHHhccCcCCCCccCCCCCHHHHHHHHHHhcCccEEEEeccCCc-ccCCCCeEEEEEeeecCCCCCCCCce
Confidence 3456788888888776666666788864432 258888877776 6999988776543 3333 22 234
Q ss_pred eeeEeccCccccccCCCc
Q 031804 69 TVRFVSRMFHPNIYADGS 86 (152)
Q Consensus 69 ~v~f~t~i~Hpnv~~~G~ 86 (152)
.+||.++| |..+..|.
T Consensus 373 i~RfANrv--PLl~~~g~ 388 (535)
T PRK04184 373 LLRFANRV--PLLYDEGS 388 (535)
T ss_pred EEEEccCC--ceeecCCc
Confidence 56888887 88875554
Done!