BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031805
         (152 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2HIM|A Chain A, Crystal Structure And Allosteric Regulation Of The
           Cytoplasmic Escherichia Coli L-Asparaginase I
 pdb|2HIM|B Chain B, Crystal Structure And Allosteric Regulation Of The
           Cytoplasmic Escherichia Coli L-Asparaginase I
 pdb|2HIM|C Chain C, Crystal Structure And Allosteric Regulation Of The
           Cytoplasmic Escherichia Coli L-Asparaginase I
 pdb|2HIM|D Chain D, Crystal Structure And Allosteric Regulation Of The
           Cytoplasmic Escherichia Coli L-Asparaginase I
          Length = 358

 Score = 25.8 bits (55), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 8   PSTDFRGGGFISLENLLYLARNFP 31
           P  + R  G I+L N LY+A N+P
Sbjct: 140 PLAELRSDGQINLLNALYVAANYP 163


>pdb|2P2D|A Chain A, Crystal Structure And Allosteric Regulation Of The
           Cytoplasmic Escherichia Coli L-Asparaginase I
 pdb|2P2D|B Chain B, Crystal Structure And Allosteric Regulation Of The
           Cytoplasmic Escherichia Coli L-Asparaginase I
 pdb|2P2D|C Chain C, Crystal Structure And Allosteric Regulation Of The
           Cytoplasmic Escherichia Coli L-Asparaginase I
 pdb|2P2D|D Chain D, Crystal Structure And Allosteric Regulation Of The
           Cytoplasmic Escherichia Coli L-Asparaginase I
 pdb|2P2N|A Chain A, Crystal Structure And Allosteric Regulation Of The
           Cytoplasmic Escherichia Coli L-Asparaginase I
 pdb|2P2N|B Chain B, Crystal Structure And Allosteric Regulation Of The
           Cytoplasmic Escherichia Coli L-Asparaginase I
 pdb|2P2N|C Chain C, Crystal Structure And Allosteric Regulation Of The
           Cytoplasmic Escherichia Coli L-Asparaginase I
 pdb|2P2N|D Chain D, Crystal Structure And Allosteric Regulation Of The
           Cytoplasmic Escherichia Coli L-Asparaginase I
          Length = 358

 Score = 25.8 bits (55), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 8   PSTDFRGGGFISLENLLYLARNFP 31
           P  + R  G I+L N LY+A N+P
Sbjct: 140 PLAELRSDGQINLLNALYVAANYP 163


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.138    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,948,532
Number of Sequences: 62578
Number of extensions: 130746
Number of successful extensions: 339
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 324
Number of HSP's gapped (non-prelim): 17
length of query: 152
length of database: 14,973,337
effective HSP length: 90
effective length of query: 62
effective length of database: 9,341,317
effective search space: 579161654
effective search space used: 579161654
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)