Query 031805
Match_columns 152
No_of_seqs 112 out of 362
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 08:35:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031805.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031805hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xkp_A Putative membrane-bound 30.7 1.3E+02 0.0043 23.0 6.2 106 17-137 105-216 (246)
2 3hl1_A Ferritin like protein; 18.1 2.7E+02 0.0093 22.1 6.0 47 91-138 267-313 (317)
3 2l9b_A MRNA 3'-END-processing 17.7 1.1E+02 0.0036 20.7 3.0 21 20-40 58-78 (109)
4 4g5s_E PINS homolog, G-protein 15.9 88 0.003 15.3 1.6 19 33-51 4-22 (26)
5 1ic9_A TH10AOX; three stranded 15.3 30 0.001 17.3 -0.2 10 8-17 8-17 (29)
6 1pxq_A Subtilisin A; thioether 15.2 84 0.0029 16.3 1.6 15 6-20 16-30 (35)
7 2xoa_A Ryanodine receptor 1; m 13.6 5.6E+02 0.019 21.7 7.2 41 91-131 513-553 (559)
8 1ya0_A SMG-7 transcript varian 13.4 5.7E+02 0.019 21.3 8.1 70 49-134 216-285 (497)
9 1dj8_A HDEA, protein HNS-depen 12.7 84 0.0029 20.3 1.4 30 2-32 42-71 (89)
10 1lv4_A Catestatin, chromograni 10.9 64 0.0022 15.9 0.3 9 9-17 11-19 (26)
No 1
>1xkp_A Putative membrane-bound YOP targeting protein YOP; YOPN, type III secretion, SYCN, membrane PR chaperon complex; HET: MLY; 1.70A {Yersinia pestis} SCOP: a.243.1.3 PDB: 1xl3_A*
Probab=30.67 E-value=1.3e+02 Score=23.03 Aligned_cols=106 Identities=12% Similarity=-0.032 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhhCcHH---HHHH---HHHhcCCCCcccchHHHHhHHHHHHHHHHhhhccCCCCcccchhhhhhcccch
Q 031805 17 FISLENLLYLARNFPKS---FQDL---LRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENE 90 (152)
Q Consensus 17 iLgL~~L~~f~~~~~~~---~~~i---l~~~~~~~~~~~yPfA~~~InvT~~l~~~l~~~~~~~~~~~~~~f~~l~~~~~ 90 (152)
+++|..++-.....|+. ...+ +.+- ..+++ |-..+||||..-+-.+-.....++... ...|.=+..+.
T Consensus 105 ~laL~~ll~~~~~~p~~~~l~~~l~~aL~~l---~q~~g-~~i~AGiNia~aa~~f~~~~~~s~~~L--R~lYr~~v~~~ 178 (246)
T 1xkp_A 105 FXMLCGLRDALXGRPELAHLSHLVEQALVSM---AEEQG-ETIVLGARITPEAYRESQSGVNPLQPL--RDTYRDAVMGY 178 (246)
T ss_dssp HHHHHHHHHHHHSCGGGHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHHHHHHTTSSCCHHHH--HHHHHHHHHCC
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHH---HHhcC-hhhhhhhhHHHHHHHHhhcccCCHHHH--HHHHHHHHhcc
Confidence 56777777766666632 2222 2211 12234 899999999877766554322222110 11111110111
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHhhcccC
Q 031805 91 SAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERELLLED 137 (152)
Q Consensus 91 ~~f~el~~~~f~~F~~~W~~~~at~mdF~~V~~~~r~~l~~~L~~~~ 137 (152)
... ..++..|.+.= ..-+|..|+..+.+-+...|...+
T Consensus 179 ~s~--------~~~~~~~~~~y-g~~~~~~vl~fL~~AL~~DL~S~~ 216 (246)
T 1xkp_A 179 QGI--------YAIWSDLQXRF-PNGDIDSVILFLQXALSADLQSQQ 216 (246)
T ss_dssp CCH--------HHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHHHHCC
T ss_pred ccH--------HHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHhhcC
Confidence 112 23445555421 445677787777777777776544
No 2
>3hl1_A Ferritin like protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Caulobacter vibrioides}
Probab=18.12 E-value=2.7e+02 Score=22.13 Aligned_cols=47 Identities=11% Similarity=0.018 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHhhcccCC
Q 031805 91 SAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERELLLEDV 138 (152)
Q Consensus 91 ~~f~el~~~~f~~F~~~W~~~~at~mdF~~V~~~~r~~l~~~L~~~~v 138 (152)
..|++-||..+..+.+.|.-..+ --.|..+|..+-..|..+-++.-+
T Consensus 267 ~~f~~~y~~lL~~L~~~f~G~d~-~~~~~~~m~~~~~~~~~~w~~g~~ 313 (317)
T 3hl1_A 267 ARLIADFAGFLDILNGMFSGGGA-PPAFGVQMAKLGGDILSCWKLGAV 313 (317)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCC-CTHHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHHHHHHHHcCCC
Confidence 57999999999999999994432 345889999999999998877544
No 3
>2l9b_A MRNA 3'-END-processing protein RNA15; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=17.71 E-value=1.1e+02 Score=20.66 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=18.8
Q ss_pred HHHHHHHHhhCcHHHHHHHHH
Q 031805 20 LENLLYLARNFPKSFQDLLRK 40 (152)
Q Consensus 20 L~~L~~f~~~~~~~~~~il~~ 40 (152)
|.+|..+++++|+.+++++..
T Consensus 58 L~qmK~~~~~nP~~a~~LL~q 78 (109)
T 2l9b_A 58 LQKFQEWTRAHPEDAASLLEL 78 (109)
T ss_dssp HHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHH
Confidence 578999999999999999875
No 4
>4g5s_E PINS homolog, G-protein-signaling modulator 2; galpha, goloco, galpha signaling, asymmetric cell division, cycle-signaling protein complex; HET: GDP CIT; 3.62A {Mus musculus}
Probab=15.88 E-value=88 Score=15.28 Aligned_cols=19 Identities=16% Similarity=0.036 Sum_probs=12.3
Q ss_pred HHHHHHHHhcCCCCcccch
Q 031805 33 SFQDLLRKQEGDRSVWEYP 51 (152)
Q Consensus 33 ~~~~il~~~~~~~~~~~yP 51 (152)
.|..+++.|.||-+.++|+
T Consensus 4 ff~ml~kcq~srlddqrca 22 (26)
T 4g5s_E 4 FFDILVKCQGSRLDDQRCA 22 (26)
T ss_dssp HHHHHHHHSCCCCSSSCBC
T ss_pred HHHHHHHhcccccccccCC
Confidence 3455667777776666664
No 5
>1ic9_A TH10AOX; three stranded antiparallel beta-sheet mini-protein motif de novo protein design; HET: DPR DAL; NMR {Synthetic} SCOP: k.26.1.1 PDB: 1ico_A* 1icl_A*
Probab=15.34 E-value=30 Score=17.26 Aligned_cols=10 Identities=60% Similarity=1.012 Sum_probs=6.9
Q ss_pred CCCcccchhH
Q 031805 8 PSTDFRGGGF 17 (152)
Q Consensus 8 P~tDfRg~Gi 17 (152)
|+--|||.|.
T Consensus 8 psytfrgpgc 17 (29)
T 1ic9_A 8 PSYTFRGPGC 17 (29)
T ss_dssp TTEEEECSCC
T ss_pred cceeecCCCC
Confidence 6667887774
No 6
>1pxq_A Subtilisin A; thioether bridge, cyclic peptide, bacteriocin, antimicrobial; HET: 2TL DPN; NMR {Bacillus subtilis} SCOP: j.5.1.2
Probab=15.25 E-value=84 Score=16.30 Aligned_cols=15 Identities=33% Similarity=0.492 Sum_probs=10.5
Q ss_pred CCCCCcccchhHHHH
Q 031805 6 KDPSTDFRGGGFISL 20 (152)
Q Consensus 6 ~dP~tDfRg~GiLgL 20 (152)
+.|.-||.=.|+-||
T Consensus 16 dgpipdfeva~~agl 30 (35)
T 1pxq_A 16 DGPIPDFEIAGAXGL 30 (35)
T ss_dssp TTTCCCSCCSCTTHH
T ss_pred cCCCCCchhhhhhhh
Confidence 469999985555554
No 7
>2xoa_A Ryanodine receptor 1; metal transport, calcium channel, ION channel, membrane PROT malignant hyperthermia, cardiac arrhythmia; 2.50A {Oryctolagus cuniculus}
Probab=13.61 E-value=5.6e+02 Score=21.69 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHH
Q 031805 91 SAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLER 131 (152)
Q Consensus 91 ~~f~el~~~~f~~F~~~W~~~~at~mdF~~V~~~~r~~l~~ 131 (152)
..+.++...++.++..+=+....+-..|.+-+..+-+||.+
T Consensus 513 ~~~~~i~~~~Y~LL~~~i~~N~~N~~y~~~~l~~l~~~l~~ 553 (559)
T 2xoa_A 513 ESWKEIVNLLYELLASLIRGNRANCALFSTNLDWVVSKLDR 553 (559)
T ss_dssp GTHHHHHHHHHHHHHHHHCC---------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcc
Confidence 56888999999999999998888888888888888888875
No 8
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=13.40 E-value=5.7e+02 Score=21.25 Aligned_cols=70 Identities=17% Similarity=0.209 Sum_probs=37.3
Q ss_pred cchHHHHhHHHHHHHHHHhhhccCCCCcccchhhhhhcccchhhHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHH
Q 031805 49 EYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQ 128 (152)
Q Consensus 49 ~yPfA~~~InvT~~l~~~l~~~~~~~~~~~~~~f~~l~~~~~~~f~el~~~~f~~F~~~W~~~~at~mdF~~V~~~~r~~ 128 (152)
.-||+.|.-|+..++-..++.............+ ...|-.+|+.+|. +.++.+|..+.+.+..+
T Consensus 216 ~~Pf~~a~~nL~~~f~~~~~~~~~~~~~~~~~~~-------~~~Fv~lh~~lf~---------~~~~~~f~~l~~~~~~~ 279 (497)
T 1ya0_A 216 KFPFPAASTNLQKALSKALESRDEVKTKWGVSDF-------IKAFIKFHGHVYL---------SKSLEKLSPLREKLEEQ 279 (497)
T ss_dssp SBCCHHHHHHHHHHHHHHTTSCCCCCSSCCHHHH-------HHHHHHHHHHHHH---------TCCGGGHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHHHhhhhhccccCChHHH-------HHHHHHHHHHHhc---------CCChhhHHHHHHHHHHH
Confidence 3588888889888877776532211000000111 1234444444442 35566777777777777
Q ss_pred HHHhhc
Q 031805 129 LERELL 134 (152)
Q Consensus 129 l~~~L~ 134 (152)
+.+.+.
T Consensus 280 l~~~l~ 285 (497)
T 1ya0_A 280 FKELLF 285 (497)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666553
No 9
>1dj8_A HDEA, protein HNS-dependent expression A; alpha helical, structural protein; 2.00A {Escherichia coli} SCOP: a.57.1.1 PDB: 1bg8_A
Probab=12.71 E-value=84 Score=20.25 Aligned_cols=30 Identities=10% Similarity=0.050 Sum_probs=23.3
Q ss_pred CCCCCCCCCcccchhHHHHHHHHHHHhhCcH
Q 031805 2 GWQGKDPSTDFRGGGFISLENLLYLARNFPK 32 (152)
Q Consensus 2 GFQ~~dP~tDfRg~GiLgL~~L~~f~~~~~~ 32 (152)
|+++.|+.-|+++.=-. --.++-+|..+|.
T Consensus 42 ~~k~~d~vvD~~~~e~v-~P~vve~Ckk~P~ 71 (89)
T 1dj8_A 42 KDKPEDAVLDVQGIATV-TPAIVQACTQDKQ 71 (89)
T ss_dssp CSCGGGCCCCHHHHHHH-HHHHHHHHHTTTT
T ss_pred CCCCCCceeehhHHHHh-hHHHHHHHHhCch
Confidence 46677788899887666 7778888888875
No 10
>1lv4_A Catestatin, chromogranin A; glycoprotein, amidation, phosphorylation, signaling protein; NMR {Synthetic} SCOP: j.95.1.1
Probab=10.87 E-value=64 Score=15.91 Aligned_cols=9 Identities=44% Similarity=0.696 Sum_probs=6.5
Q ss_pred CCcccchhH
Q 031805 9 STDFRGGGF 17 (152)
Q Consensus 9 ~tDfRg~Gi 17 (152)
.-|||+.|.
T Consensus 11 ~Y~Fr~Pg~ 19 (26)
T 1lv4_A 11 AYGFRGPGP 19 (26)
T ss_dssp SSSSCSSCT
T ss_pred ecccCCCcc
Confidence 468888774
Done!