Query 031805
Match_columns 152
No_of_seqs 112 out of 362
Neff 7.3
Searched_HMMs 13730
Date Mon Mar 25 08:35:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031805.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031805hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ya0a1 a.118.8.1 (A:1-497) SM 28.0 1.1E+02 0.0082 22.8 8.6 71 50-136 217-287 (497)
2 d1f7ua1 a.27.1.1 (A:484-607) A 21.5 81 0.0059 19.3 4.9 43 102-144 76-124 (124)
3 d1knza_ e.34.1.1 (A:) NSP3 hom 20.2 1.1E+02 0.008 19.9 6.4 47 92-139 8-54 (157)
4 d2ifta1 c.66.1.46 (A:11-193) P 17.0 24 0.0017 23.5 1.4 29 12-41 51-85 (183)
5 d2fpoa1 c.66.1.46 (A:10-192) M 13.1 35 0.0025 22.5 1.4 29 12-41 51-85 (183)
6 d1lw7a2 c.37.1.1 (A:220-411) T 12.0 99 0.0072 18.7 3.5 42 102-143 146-192 (192)
7 d1juba_ c.1.4.1 (A:) Dihydroor 11.5 50 0.0037 23.3 1.9 27 119-145 279-305 (311)
8 d2c52b1 a.153.1.1 (B:303-353) 11.3 64 0.0047 17.2 1.8 23 124-146 12-34 (51)
9 d1goxa_ c.1.4.1 (A:) Glycolate 11.1 66 0.0048 23.3 2.6 30 119-148 324-353 (359)
10 d2axti1 f.23.37.1 (I:1-35) Pho 11.0 14 0.00099 18.5 -1.0 8 2-9 22-29 (35)
No 1
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.96 E-value=1.1e+02 Score=22.82 Aligned_cols=71 Identities=17% Similarity=0.225 Sum_probs=40.0
Q ss_pred chHHHHhHHHHHHHHHHhhhccCCCCcccchhhhhhcccchhhHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHH
Q 031805 50 YPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQL 129 (152)
Q Consensus 50 yPfA~~~InvT~~l~~~l~~~~~~~~~~~~~~f~~l~~~~~~~f~el~~~~f~~F~~~W~~~~at~mdF~~V~~~~r~~l 129 (152)
=||+.|--|+..++-...+.............+. ..|..+++..|. +.+..+|.++.+.+.+++
T Consensus 217 ~~~~~a~~nL~~~~~~~~~~~~~~~~~~~~~~~~-------~~f~~~~~~l~~---------~~~~~~~~~~~~~~~~~l 280 (497)
T d1ya0a1 217 FPFPAASTNLQKALSKALESRDEVKTKWGVSDFI-------KAFIKFHGHVYL---------SKSLEKLSPLREKLEEQF 280 (497)
T ss_dssp BCCHHHHHHHHHHHHHHTTSCCCCCSSCCHHHHH-------HHHHHHHHHHHH---------TCCGGGHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhhhhhhccccccchHH-------HHHHHHHHHHHh---------CCchhhHHHHHHHHHHHH
Confidence 3788888888777766554332211111111111 234444443332 566778888888888888
Q ss_pred HHhhccc
Q 031805 130 ERELLLE 136 (152)
Q Consensus 130 ~~~L~~~ 136 (152)
...+...
T Consensus 281 ~~~l~~~ 287 (497)
T d1ya0a1 281 KELLFQK 287 (497)
T ss_dssp HHHHHTT
T ss_pred HHHHhcC
Confidence 8777654
No 2
>d1f7ua1 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.55 E-value=81 Score=19.30 Aligned_cols=43 Identities=12% Similarity=0.157 Sum_probs=29.1
Q ss_pred HHHHHHHhhCC---CCh-hhHH--HHHHHHHHHHHHhhcccCCCCCCCC
Q 031805 102 KLMDHQWLAMR---ASY-MDFN--TVMKSTRRQLERELLLEDVTRLEDL 144 (152)
Q Consensus 102 ~~F~~~W~~~~---at~-mdF~--~V~~~~r~~l~~~L~~~~v~~~~~~ 144 (152)
..|+++|.+.+ .+. .--. ...+.++..|+..|.-=+++.+|.|
T Consensus 76 ~~F~~fY~~~~Il~~~~~~~~~RL~L~~~~~~vL~~gL~lLGI~~~e~M 124 (124)
T d1f7ua1 76 HQVSSCYDVLWVAGQTEELATARLALYGAARQVLYNGMRLLGLTPVERM 124 (124)
T ss_dssp HHHHHHHHHCCSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCSCC
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccC
Confidence 56777777543 111 1122 2367788899999988899999987
No 3
>d1knza_ e.34.1.1 (A:) NSP3 homodimer {Simian 11 rotavirus [TaxId: 10923]}
Probab=20.22 E-value=1.1e+02 Score=19.92 Aligned_cols=47 Identities=9% Similarity=0.136 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHhhcccCCC
Q 031805 92 AFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERELLLEDVT 139 (152)
Q Consensus 92 ~f~el~~~~f~~F~~~W~~~~at~mdF~~V~~~~r~~l~~~L~~~~v~ 139 (152)
.|+.-|.++...-.+.-..++..+ ||++|...++....-.+.+.+|.
T Consensus 8 I~n~af~aA~~~~~s~l~~~gi~y-D~~ev~~r~k~k~d~~mdDSGVk 54 (157)
T d1knza_ 8 IINSSFEAAVVAATSALENMGIEY-DYQDIYSRVKNKFDFVMDDSGVK 54 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHhhHHHHHHHHHHHHHcCCcc-hHHHHHHHHHHhhcceecchhHH
Confidence 456666677777777777777765 88889999988888777766654
No 4
>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}
Probab=17.03 E-value=24 Score=23.48 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=21.9
Q ss_pred ccchhHHHHHHH------HHHHhhCcHHHHHHHHHh
Q 031805 12 FRGGGFISLENL------LYLARNFPKSFQDLLRKQ 41 (152)
Q Consensus 12 fRg~GiLgL~~L------~~f~~~~~~~~~~il~~~ 41 (152)
|-|+|.+|+++| ++|++..+... +++.++
T Consensus 51 FaGsG~~glEalSRGA~~v~fVE~~~~a~-~~ik~N 85 (183)
T d2ifta1 51 FAGSGSLGFEALSRQAKKVTFLELDKTVA-NQLKKN 85 (183)
T ss_dssp TCTTCHHHHHHHHTTCSEEEEECSCHHHH-HHHHHH
T ss_pred ccCccceeeeeeeecceeeEEeecccchh-hhHhhH
Confidence 569999999999 67888887754 445544
No 5
>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}
Probab=13.05 E-value=35 Score=22.54 Aligned_cols=29 Identities=31% Similarity=0.321 Sum_probs=19.6
Q ss_pred ccchhHHHHHHHH------HHHhhCcHHHHHHHHHh
Q 031805 12 FRGGGFISLENLL------YLARNFPKSFQDLLRKQ 41 (152)
Q Consensus 12 fRg~GiLgL~~L~------~f~~~~~~~~~~il~~~ 41 (152)
|-|+|.+|++++- +|++..++. .+++.++
T Consensus 51 faGsG~~giealsrGa~~v~~VE~~~~a-~~~~k~N 85 (183)
T d2fpoa1 51 FAGSGALGLEALSRYAAGATLIEMDRAV-SQQLIKN 85 (183)
T ss_dssp TCTTCHHHHHHHHTTCSEEEEECSCHHH-HHHHHHH
T ss_pred hccccceeeeEEecCcceeEEEEEeech-hhHHHHH
Confidence 4699999999985 455666654 4455544
No 6
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}
Probab=11.98 E-value=99 Score=18.70 Aligned_cols=42 Identities=14% Similarity=0.301 Sum_probs=29.1
Q ss_pred HHHHHHHhhCCCCh-----hhHHHHHHHHHHHHHHhhcccCCCCCCC
Q 031805 102 KLMDHQWLAMRASY-----MDFNTVMKSTRRQLERELLLEDVTRLED 143 (152)
Q Consensus 102 ~~F~~~W~~~~at~-----mdF~~V~~~~r~~l~~~L~~~~v~~~~~ 143 (152)
..+...+.+.+..+ .+....+..+.+.|++.|..+++.++++
T Consensus 146 ~~~~~~l~~~~~~~i~i~~~~~~e~~~~i~~~I~~ll~~~~~~~~~~ 192 (192)
T d1lw7a2 146 QLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVIEKVLNEEEISELQN 192 (192)
T ss_dssp HHHHHHHHGGGCCCEEEECSSHHHHHHHHHHHHHHHTSCCCCSSCCC
T ss_pred HHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHHCcCcHhhccC
Confidence 33455555543221 3567778888999999999999988874
No 7
>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]}
Probab=11.47 E-value=50 Score=23.35 Aligned_cols=27 Identities=11% Similarity=0.224 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCCCCC
Q 031805 119 NTVMKSTRRQLERELLLEDVTRLEDLP 145 (152)
Q Consensus 119 ~~V~~~~r~~l~~~L~~~~v~~~~~~~ 145 (152)
+.+.+.+.+.|++.|..++.++++|++
T Consensus 279 p~~i~~i~~~L~~~m~~~G~~si~e~~ 305 (311)
T d1juba_ 279 PAIFDRIIKELEEIMNQKGYQSIADFH 305 (311)
T ss_dssp THHHHHHHHHHHHHHHHHTCCSGGGTT
T ss_pred hHHHHHHHHHHHHHHHHcCCCCHHHhc
Confidence 356778888999999999999999986
No 8
>d2c52b1 a.153.1.1 (B:303-353) Nuclear receptor coactivator 1, NCOA1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.34 E-value=64 Score=17.16 Aligned_cols=23 Identities=30% Similarity=0.189 Sum_probs=18.3
Q ss_pred HHHHHHHHhhcccCCCCCCCCCc
Q 031805 124 STRRQLERELLLEDVTRLEDLPS 146 (152)
Q Consensus 124 ~~r~~l~~~L~~~~v~~~~~~~~ 146 (152)
.+-.|+-..|+++++..+||++.
T Consensus 12 ALLdQL~t~L~n~D~~~LeEiDr 34 (51)
T d2c52b1 12 ALLEQLVSFLSGKDETELAELDR 34 (51)
T ss_dssp HHHHHHHHHHHTCSGGGTCTTGG
T ss_pred HHHHHHHHHHhcCchhHHHHHHH
Confidence 45678888899999988888763
No 9
>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=11.13 E-value=66 Score=23.35 Aligned_cols=30 Identities=17% Similarity=0.338 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCCCCCccc
Q 031805 119 NTVMKSTRRQLERELLLEDVTRLEDLPSYS 148 (152)
Q Consensus 119 ~~V~~~~r~~l~~~L~~~~v~~~~~~~~~~ 148 (152)
.++++.++++|+.++..-.+++++||..=+
T Consensus 324 ~~~i~~l~~EL~~~M~l~G~~~i~~L~~~~ 353 (359)
T d1goxa_ 324 KKVLQMMRDEFELTMALSGCRSLKEISRSH 353 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSBTTTCCGGG
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHcCHhh
Confidence 567888899999999999999999997643
No 10
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=11.01 E-value=14 Score=18.46 Aligned_cols=8 Identities=38% Similarity=0.887 Sum_probs=6.7
Q ss_pred CCCCCCCC
Q 031805 2 GWQGKDPS 9 (152)
Q Consensus 2 GFQ~~dP~ 9 (152)
||-+.||+
T Consensus 22 GFLSnDP~ 29 (35)
T d2axti1 22 GFLSGDPA 29 (35)
T ss_dssp HHHTTCTT
T ss_pred hhccCCCC
Confidence 78888888
Done!