Query 031806
Match_columns 152
No_of_seqs 104 out of 262
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 05:36:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031806.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031806hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14523 Syntaxin_2: Syntaxin- 99.9 2.4E-26 5.2E-31 161.0 12.5 101 40-140 1-101 (102)
2 KOG0811 SNARE protein PEP12/VA 99.9 6.4E-21 1.4E-25 154.5 15.0 108 30-138 16-123 (269)
3 smart00503 SynN Syntaxin N-ter 99.7 4.2E-17 9.1E-22 116.0 12.4 108 31-138 4-117 (117)
4 cd00179 SynN Syntaxin N-termin 99.7 4.9E-17 1.1E-21 120.6 10.7 113 31-143 2-121 (151)
5 PF00804 Syntaxin: Syntaxin; 98.2 2E-05 4.4E-10 53.9 9.4 93 31-123 3-103 (103)
6 KOG0810 SNARE protein Syntaxin 95.3 0.68 1.5E-05 38.5 12.9 111 32-142 37-155 (297)
7 COG5325 t-SNARE complex subuni 95.2 0.059 1.3E-06 44.2 6.0 106 31-143 34-141 (283)
8 KOG0809 SNARE protein TLG2/Syn 84.8 22 0.00047 29.7 14.3 107 30-138 56-168 (305)
9 PF10498 IFT57: Intra-flagella 83.6 11 0.00024 32.2 9.1 84 54-140 200-289 (359)
10 PRK15330 cell invasion protein 78.1 12 0.00026 31.7 7.3 76 33-128 131-207 (343)
11 KOG1937 Uncharacterized conser 76.1 26 0.00056 31.1 8.9 103 31-133 392-518 (521)
12 COG4575 ElaB Uncharacterized c 73.6 29 0.00064 24.5 7.5 55 40-94 10-66 (104)
13 PF07106 TBPIP: Tat binding pr 70.8 41 0.0009 25.1 10.2 90 33-138 77-166 (169)
14 PHA03172 UL37 tegument protein 70.4 64 0.0014 30.9 10.6 66 34-100 779-865 (951)
15 PF14523 Syntaxin_2: Syntaxin- 69.7 31 0.00067 23.2 7.9 60 69-132 37-100 (102)
16 PF11593 Med3: Mediator comple 68.4 43 0.00093 28.9 8.4 78 54-132 10-94 (379)
17 PF07730 HisKA_3: Histidine ki 67.7 26 0.00056 21.5 7.6 57 35-96 8-64 (68)
18 PF05227 CHASE3: CHASE3 domain 67.7 38 0.00083 23.5 7.6 85 42-136 46-134 (138)
19 PF05739 SNARE: SNARE domain; 65.4 24 0.00053 21.5 5.1 54 43-96 5-59 (63)
20 PF05597 Phasin: Poly(hydroxya 62.5 27 0.00059 25.6 5.5 53 33-85 74-129 (132)
21 COG4694 Uncharacterized protei 59.2 81 0.0017 29.1 8.7 70 60-138 386-459 (758)
22 PF06103 DUF948: Bacterial pro 57.7 53 0.0012 21.8 7.0 28 70-97 45-72 (90)
23 KOG0972 Huntingtin interacting 56.4 72 0.0016 27.0 7.5 81 54-137 207-293 (384)
24 PRK13848 conjugal transfer pro 56.1 66 0.0014 22.4 6.8 70 65-138 3-72 (98)
25 PF01017 STAT_alpha: STAT prot 54.6 49 0.0011 25.2 6.0 54 31-86 124-177 (182)
26 TIGR02553 SipD_IpaD_SspD type 53.7 85 0.0018 26.4 7.6 75 33-127 103-178 (308)
27 KOG1962 B-cell receptor-associ 53.5 91 0.002 24.9 7.4 60 72-134 151-210 (216)
28 cd07623 BAR_SNX1_2 The Bin/Amp 53.3 1.1E+02 0.0024 24.0 10.9 23 115-137 190-212 (224)
29 PF08066 PMC2NT: PMC2NT (NUC01 53.2 68 0.0015 21.6 6.1 66 30-95 23-88 (91)
30 COG5074 t-SNARE complex subuni 52.6 1.3E+02 0.0028 24.6 10.4 66 69-137 62-127 (280)
31 TIGR01834 PHA_synth_III_E poly 51.3 55 0.0012 27.7 6.2 60 31-90 252-314 (320)
32 KOG3065 SNAP-25 (synaptosome-a 50.6 49 0.0011 27.3 5.7 57 39-95 215-272 (273)
33 PF14966 DNA_repr_REX1B: DNA r 50.3 82 0.0018 21.7 6.9 52 31-85 36-87 (97)
34 TIGR02780 TrbJ_Ti P-type conju 48.5 1.4E+02 0.003 23.9 8.0 53 36-90 44-96 (246)
35 PF07820 TraC: TraC-like prote 47.8 92 0.002 21.6 6.7 63 67-133 4-66 (92)
36 KOG3251 Golgi SNAP receptor co 46.2 1.5E+02 0.0033 23.6 10.7 92 35-137 3-96 (213)
37 PF04728 LPP: Lipoprotein leuc 45.2 47 0.001 20.9 3.7 23 37-59 5-27 (56)
38 PF15619 Lebercilin: Ciliary p 44.7 1.5E+02 0.0032 23.1 12.6 98 37-139 91-193 (194)
39 COG4847 Uncharacterized protei 43.9 1.1E+02 0.0024 21.4 7.1 46 48-93 56-101 (103)
40 TIGR01837 PHA_granule_1 poly(h 43.8 73 0.0016 22.7 5.1 40 46-85 74-116 (118)
41 TIGR00634 recN DNA repair prot 43.4 2.4E+02 0.0053 25.2 12.1 68 30-99 265-342 (563)
42 PF03670 UPF0184: Uncharacteri 43.2 1E+02 0.0022 21.0 5.3 48 37-93 28-75 (83)
43 KOG1451 Oligophrenin-1 and rel 41.5 1E+02 0.0022 28.6 6.6 15 64-78 12-26 (812)
44 PRK12715 flgK flagellar hook-a 40.1 94 0.002 28.7 6.4 21 70-90 157-177 (649)
45 PF04799 Fzo_mitofusin: fzo-li 39.5 1.3E+02 0.0027 23.2 6.0 29 70-98 114-142 (171)
46 PF07432 Hc1: Histone H1-like 39.4 1.3E+02 0.0028 21.8 5.7 22 74-95 2-23 (123)
47 PF06419 COG6: Conserved oligo 38.8 1.9E+02 0.0042 26.4 8.1 67 69-135 63-143 (618)
48 PF03961 DUF342: Protein of un 38.6 2.1E+02 0.0045 24.9 8.1 55 31-85 330-388 (451)
49 PF06013 WXG100: Proteins of 1 37.4 1E+02 0.0022 19.1 7.7 54 33-86 9-65 (86)
50 PF05659 RPW8: Arabidopsis bro 37.1 1.7E+02 0.0037 21.6 9.7 87 31-129 30-116 (147)
51 PF05957 DUF883: Bacterial pro 36.1 1.3E+02 0.0029 20.0 6.0 22 69-90 31-52 (94)
52 PF10191 COG7: Golgi complex c 35.8 2.8E+02 0.0061 26.1 8.9 64 37-100 47-112 (766)
53 PF06511 IpaD: Invasion plasmi 35.1 2.4E+02 0.0052 24.1 7.6 75 33-127 130-205 (337)
54 PF10805 DUF2730: Protein of u 34.9 1.6E+02 0.0034 20.5 7.2 51 42-96 42-92 (106)
55 PHA03173 UL37 tegument protein 34.7 4.6E+02 0.0099 25.9 11.5 90 34-131 728-853 (1028)
56 PRK10807 paraquat-inducible pr 34.4 3.5E+02 0.0076 24.4 12.3 21 30-50 412-432 (547)
57 PLN03217 transcription factor 34.4 1.5E+02 0.0033 20.3 5.7 55 46-100 21-77 (93)
58 COG4238 Murein lipoprotein [Ce 34.2 74 0.0016 21.2 3.5 24 36-59 26-49 (78)
59 PRK06665 flgK flagellar hook-a 33.6 3.8E+02 0.0083 24.6 11.5 54 69-122 168-221 (627)
60 PF06156 DUF972: Protein of un 33.6 1.7E+02 0.0037 20.6 7.8 27 70-96 6-32 (107)
61 PF03114 BAR: BAR domain; Int 33.4 1.2E+02 0.0026 22.5 5.3 11 30-40 25-35 (229)
62 PF10146 zf-C4H2: Zinc finger- 33.3 1.4E+02 0.0031 23.8 5.8 56 37-94 48-103 (230)
63 COG3096 MukB Uncharacterized p 32.9 4.7E+02 0.01 25.4 10.7 99 31-133 853-957 (1480)
64 PRK10132 hypothetical protein; 32.5 1.8E+02 0.0039 20.5 7.5 29 68-96 8-36 (108)
65 TIGR03752 conj_TIGR03752 integ 32.3 3.7E+02 0.008 24.1 9.0 19 115-133 121-139 (472)
66 PRK10132 hypothetical protein; 32.1 1.8E+02 0.004 20.5 7.6 53 38-90 12-66 (108)
67 PF08649 DASH_Dad1: DASH compl 32.1 71 0.0015 20.2 3.1 27 33-59 7-33 (58)
68 PF12732 YtxH: YtxH-like prote 31.7 1.4E+02 0.0031 19.0 7.8 38 57-94 14-51 (74)
69 PRK07521 flgK flagellar hook-a 31.1 3.7E+02 0.008 23.7 11.6 54 69-122 151-204 (483)
70 PF10146 zf-C4H2: Zinc finger- 31.1 2.8E+02 0.006 22.2 10.5 48 86-139 56-103 (230)
71 PF05791 Bacillus_HBL: Bacillu 30.9 2.4E+02 0.0052 21.5 10.3 42 57-99 96-137 (184)
72 PRK07739 flgK flagellar hook-a 30.7 3.8E+02 0.0083 23.8 11.5 54 69-122 168-221 (507)
73 PF04065 Not3: Not1 N-terminal 29.9 1.7E+02 0.0036 23.6 5.6 60 76-136 5-64 (233)
74 cd00193 t_SNARE Soluble NSF (N 29.8 1.2E+02 0.0026 17.7 5.1 19 70-88 35-53 (60)
75 PF12889 DUF3829: Protein of u 29.3 2E+02 0.0044 22.6 6.1 80 44-129 194-275 (276)
76 PF13870 DUF4201: Domain of un 29.2 2.4E+02 0.0053 21.0 10.2 106 31-139 42-167 (177)
77 PF09712 PHA_synth_III_E: Poly 29.2 98 0.0021 25.6 4.3 54 31-84 235-291 (293)
78 PRK07191 flgK flagellar hook-a 29.2 1.9E+02 0.0041 25.3 6.3 27 70-96 157-183 (456)
79 PF05816 TelA: Toxic anion res 29.1 3.3E+02 0.0072 22.7 7.6 72 69-140 242-314 (333)
80 PF05713 MobC: Bacterial mobil 28.6 1.3E+02 0.0028 17.6 5.4 34 43-78 4-37 (48)
81 PF06015 Chordopox_A30L: Chord 28.3 71 0.0015 21.0 2.6 30 30-59 22-51 (71)
82 PF11593 Med3: Mediator comple 27.9 1.3E+02 0.0027 26.1 4.8 25 70-98 70-94 (379)
83 COG5661 Predicted secreted Zn- 27.5 3.1E+02 0.0067 21.6 8.3 58 30-87 111-176 (210)
84 PHA03332 membrane glycoprotein 27.5 6.4E+02 0.014 25.3 10.2 62 37-98 893-963 (1328)
85 PF05377 FlaC_arch: Flagella a 27.5 1.6E+02 0.0035 18.4 6.4 38 39-85 4-41 (55)
86 COG4467 Regulator of replicati 27.3 2.4E+02 0.0051 20.2 5.8 49 68-119 4-52 (114)
87 PF04048 Sec8_exocyst: Sec8 ex 26.9 1.3E+02 0.0029 21.8 4.3 33 31-63 43-83 (142)
88 smart00503 SynN Syntaxin N-ter 26.8 2E+02 0.0044 19.3 9.6 98 42-141 8-113 (117)
89 PF11944 DUF3461: Protein of u 26.7 2.1E+02 0.0046 20.8 5.1 31 44-74 69-100 (125)
90 KOG2150 CCR4-NOT transcription 26.6 1.8E+02 0.0039 26.6 5.7 58 76-134 5-62 (575)
91 PRK07521 flgK flagellar hook-a 26.0 2.3E+02 0.0051 24.9 6.4 50 36-85 152-205 (483)
92 PF15066 CAGE1: Cancer-associa 25.6 4.8E+02 0.01 23.5 8.0 37 106-142 474-510 (527)
93 COG5200 LUC7 U1 snRNP componen 25.5 3.6E+02 0.0078 21.7 8.2 59 64-137 106-164 (258)
94 PRK05683 flgK flagellar hook-a 25.5 5.6E+02 0.012 23.9 11.7 55 69-123 156-210 (676)
95 PHA02892 hypothetical protein; 25.4 90 0.0019 20.6 2.7 30 30-59 28-57 (75)
96 PF08650 DASH_Dad4: DASH compl 25.3 2.1E+02 0.0045 18.9 4.6 30 35-64 11-40 (72)
97 cd07909 YciF YciF bacterial st 25.1 2.9E+02 0.0063 20.5 8.3 30 67-96 31-60 (147)
98 PRK08471 flgK flagellar hook-a 25.0 5.4E+02 0.012 23.6 11.4 55 69-123 161-217 (613)
99 PLN03094 Substrate binding sub 24.9 4.5E+02 0.0098 22.6 10.9 100 32-135 228-348 (370)
100 PRK14155 heat shock protein Gr 24.8 3.1E+02 0.0068 21.6 6.3 10 66-75 42-51 (208)
101 PRK07191 flgK flagellar hook-a 24.7 4.7E+02 0.01 22.8 11.6 20 80-99 160-179 (456)
102 COG1256 FlgK Flagellar hook-as 24.1 5.5E+02 0.012 23.3 11.5 53 70-122 161-213 (552)
103 PRK10404 hypothetical protein; 24.1 2.5E+02 0.0055 19.5 6.5 46 45-90 12-59 (101)
104 PF00489 IL6: Interleukin-6/G- 24.0 3.1E+02 0.0066 20.4 8.7 58 40-99 52-109 (154)
105 COG3685 Uncharacterized protei 23.8 3.4E+02 0.0073 20.8 7.1 59 65-128 35-93 (167)
106 COG5182 CUS1 Splicing factor 3 23.8 1.6E+02 0.0035 25.4 4.6 25 104-128 48-72 (429)
107 PRK05683 flgK flagellar hook-a 23.7 2.7E+02 0.0059 25.9 6.5 50 37-86 158-211 (676)
108 PHA03044 IMV membrane protein; 23.4 1.2E+02 0.0025 20.1 3.0 31 30-60 24-54 (74)
109 PF09537 DUF2383: Domain of un 23.2 2.5E+02 0.0053 19.0 8.2 58 38-99 4-61 (111)
110 PF14071 YlbD_coat: Putative c 23.2 1.7E+02 0.0037 21.3 4.2 30 37-66 79-108 (124)
111 PF15308 CEP170_C: CEP170 C-te 22.9 76 0.0016 29.5 2.7 62 69-134 607-668 (689)
112 PRK04654 sec-independent trans 22.7 4E+02 0.0087 21.3 6.9 61 33-96 25-85 (214)
113 PRK08147 flgK flagellar hook-a 22.5 2.8E+02 0.0061 24.7 6.3 26 70-95 158-183 (547)
114 cd07909 YciF YciF bacterial st 22.4 1.9E+02 0.0041 21.4 4.4 55 33-88 31-85 (147)
115 KOG4438 Centromere-associated 21.8 4E+02 0.0086 23.6 6.7 29 105-134 268-296 (446)
116 PF10372 YojJ: Bacterial membr 21.8 2.4E+02 0.0053 18.4 5.3 20 115-134 40-59 (70)
117 KOG3758 Uncharacterized conser 21.8 2.8E+02 0.0061 25.7 6.0 35 63-97 7-41 (655)
118 PF05276 SH3BP5: SH3 domain-bi 21.8 4.3E+02 0.0094 21.3 8.8 85 39-132 8-92 (239)
119 PRK15039 transcriptional repre 21.7 2.7E+02 0.0059 19.0 11.3 83 36-127 7-89 (90)
120 PF06037 DUF922: Bacterial pro 21.7 3.4E+02 0.0074 20.3 5.7 48 47-94 100-147 (161)
121 PRK13676 hypothetical protein; 21.5 2.8E+02 0.0062 19.1 5.2 21 118-138 37-57 (114)
122 cd00179 SynN Syntaxin N-termin 21.4 3.1E+02 0.0067 19.4 8.9 72 68-140 47-125 (151)
123 PRK13169 DNA replication intia 21.2 3.1E+02 0.0067 19.4 7.2 30 69-98 5-34 (110)
124 COG1937 Uncharacterized protei 21.2 2.8E+02 0.0061 18.9 7.1 48 37-87 8-55 (89)
125 PRK13874 conjugal transfer pro 21.1 4.3E+02 0.0094 21.1 7.6 48 37-86 46-93 (230)
126 PF15469 Sec5: Exocyst complex 21.0 3.6E+02 0.0078 20.0 10.3 101 36-136 4-119 (182)
127 PF09177 Syntaxin-6_N: Syntaxi 20.9 2.7E+02 0.0059 18.7 8.1 28 33-60 3-30 (97)
128 PRK08147 flgK flagellar hook-a 20.9 6E+02 0.013 22.6 11.5 20 79-98 160-179 (547)
129 cd07671 F-BAR_PSTPIP1 The F-BA 20.9 4.4E+02 0.0095 21.0 8.6 56 61-129 149-204 (242)
130 KOG4025 Putative apoptosis rel 20.8 4.1E+02 0.0089 20.6 9.5 13 114-126 164-176 (207)
131 PRK13842 conjugal transfer pro 20.7 3.2E+02 0.0069 22.5 5.7 42 42-85 55-110 (267)
132 cd07596 BAR_SNX The Bin/Amphip 20.7 3.6E+02 0.0078 20.0 12.5 24 115-138 186-209 (218)
133 PF13747 DUF4164: Domain of un 20.6 2.8E+02 0.0061 18.7 8.7 61 39-99 5-66 (89)
134 PRK12714 flgK flagellar hook-a 20.5 2.7E+02 0.0058 25.6 5.8 52 34-85 155-208 (624)
No 1
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=99.94 E-value=2.4e-26 Score=161.05 Aligned_cols=101 Identities=39% Similarity=0.601 Sum_probs=90.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHHH
Q 031806 40 VAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDF 119 (152)
Q Consensus 40 Is~~if~In~~vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~~~KL~~df 119 (152)
|+++||+||++|+.|+++++.|||++|+++||++||.++++|++|+++|+..|++|..+......++.++++.+||.+||
T Consensus 1 is~~l~~in~~v~~l~k~~~~lGt~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~~~~~~~~~~k~~~~KL~~df 80 (102)
T PF14523_consen 1 ISSNLFKINQNVSQLEKLVNQLGTPRDSQELREKIHQLIQKTNQLIKEISELLKKLNSLSSDRSNDRQQKLQREKLSRDF 80 (102)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH-SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999222367889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q 031806 120 QSVLKEFQKAQRLAAERETTY 140 (152)
Q Consensus 120 ~~~l~~Fq~~Qr~~~ekek~~ 140 (152)
+.+|++||++|+.|+++++++
T Consensus 81 ~~~l~~fq~~q~~~~~~~k~~ 101 (102)
T PF14523_consen 81 KEALQEFQKAQRRYAEKEKQT 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999875
No 2
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=6.4e-21 Score=154.50 Aligned_cols=108 Identities=46% Similarity=0.550 Sum_probs=104.0
Q ss_pred CCccccHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHH
Q 031806 30 QSQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRK 109 (152)
Q Consensus 30 ~~ef~~l~~~Is~~if~In~~vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k 109 (152)
+.+|..+...|+.+||.|+.+|.+|.+++..|||+.|+++||++||.....++.++|+|+..|+++.++.. .+..+.+|
T Consensus 16 ~~~~~~l~~~i~~~i~~i~~~~~~l~r~~~~lgt~~ds~~lr~kl~~~~~~~~~~vkdt~~~lke~~~~~~-~~~~~~~k 94 (269)
T KOG0811|consen 16 PFDFQQLAQEIAANIQRINQQVLSLLRFLNSLGTKSDSPELRDKLHQERLNANQLVKDTSALLKEIDTLRL-ESDLRQLK 94 (269)
T ss_pred CCcHhHHHHHHHHHHHHHhHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999987 35568999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031806 110 IADAKLAKDFQSVLKEFQKAQRLAAERET 138 (152)
Q Consensus 110 ~~~~KL~~df~~~l~~Fq~~Qr~~~ekek 138 (152)
++++||++||..+|++||.+|++++++++
T Consensus 95 ~~~~kL~~ef~~~l~efq~vQrk~ae~ek 123 (269)
T KOG0811|consen 95 IQLDKLVDEFSAALKEFQKVQRKSAEREK 123 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 99999999999999999999999999998
No 3
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=99.74 E-value=4.2e-17 Score=115.99 Aligned_cols=108 Identities=31% Similarity=0.437 Sum_probs=98.9
Q ss_pred CccccHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-----CCC
Q 031806 31 SQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDT-LDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHH-----TEV 104 (152)
Q Consensus 31 ~ef~~l~~~Is~~if~In~~vs~l~kl~~~LGT~~Dt-~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~-----~~~ 104 (152)
++|...++.|..+|+.|+++|..|+++...+|++.|. +.++++|+.+...|+.++++|...|+.|...... .++
T Consensus 4 ~~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~~ 83 (117)
T smart00503 4 DEFFEKVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENRASGSAS 83 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcccCCHh
Confidence 6799999999999999999999999999999999986 6899999999999999999999999999987531 145
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031806 105 SPIRKIADAKLAKDFQSVLKEFQKAQRLAAERET 138 (152)
Q Consensus 105 ~~~~k~~~~KL~~df~~~l~~Fq~~Qr~~~ekek 138 (152)
++.++.+.++|.++|+.+|.+||.+|+.|.++.|
T Consensus 84 ~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k 117 (117)
T smart00503 84 DRTRKAQTEKLRKKFKEVMNEFQRLQRKYREREK 117 (117)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 6789999999999999999999999999998864
No 4
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=99.72 E-value=4.9e-17 Score=120.63 Aligned_cols=113 Identities=28% Similarity=0.364 Sum_probs=103.4
Q ss_pred CccccHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC------CC
Q 031806 31 SQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKD-TLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHH------TE 103 (152)
Q Consensus 31 ~ef~~l~~~Is~~if~In~~vs~l~kl~~~LGT~~D-t~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~------~~ 103 (152)
++|..+++.|..+|+.|+.+|..|+++...|||..| .+.+|.+|+.+...|+.+++.+...|+.|...... .+
T Consensus 2 ~~F~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~~s~ 81 (151)
T cd00179 2 EEFFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEALNGSS 81 (151)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcH
Confidence 579999999999999999999999999999999998 88999999999999999999999999999986431 12
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 031806 104 VSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPF 143 (152)
Q Consensus 104 ~~~~~k~~~~KL~~df~~~l~~Fq~~Qr~~~ekek~~~~~ 143 (152)
+.+.++.+.++|.++|+.+|++||.+|+.+.++.|..+.+
T Consensus 82 ~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i~R 121 (151)
T cd00179 82 VDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQR 121 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677899999999999999999999999999999887764
No 5
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=98.21 E-value=2e-05 Score=53.94 Aligned_cols=93 Identities=25% Similarity=0.314 Sum_probs=76.7
Q ss_pred CccccHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc----c---CC
Q 031806 31 SQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDT-LDLRDKLHKTRLHIGQLVKDTSSKLKQASEAD----H---HT 102 (152)
Q Consensus 31 ~ef~~l~~~Is~~if~In~~vs~l~kl~~~LGT~~Dt-~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~----~---~~ 102 (152)
|+|-..++.|...|..|..+|..|.++-..+-+..+. .+++..|..++..|+.++..+...|+.|.... . ..
T Consensus 3 ~~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~~~~~~~~ 82 (103)
T PF00804_consen 3 PEFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDSEGEEPSS 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT--S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc
Confidence 5688899999999999999999999999888776663 37999999999999999999999999999872 1 11
Q ss_pred CCchhHHHHHHHHHHHHHHHH
Q 031806 103 EVSPIRKIADAKLAKDFQSVL 123 (152)
Q Consensus 103 ~~~~~~k~~~~KL~~df~~~l 123 (152)
.+.+.++.+..-|.+.|++++
T Consensus 83 ~~~ri~~nq~~~L~~kf~~~m 103 (103)
T PF00804_consen 83 NEVRIRKNQVQALSKKFQEVM 103 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHC
Confidence 234456667777888888765
No 6
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.34 E-value=0.68 Score=38.54 Aligned_cols=111 Identities=18% Similarity=0.268 Sum_probs=84.8
Q ss_pred ccccHHHHHHHHHHHHHhhHHHHHHHHH-hcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-------CCC
Q 031806 32 QSQDPSQAVAAAIFQINTAVSSFYRLVN-SLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADH-------HTE 103 (152)
Q Consensus 32 ef~~l~~~Is~~if~In~~vs~l~kl~~-~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~-------~~~ 103 (152)
+|-.=++.|-..|-.+...|..|+++-. .|-++.--+.++.+|......+..+.+.+-..|+.+..-.. ..+
T Consensus 37 ~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~~~~~ 116 (297)
T KOG0810|consen 37 EFFEDVEEIRDDIEKLDEDVEKLQKLHSKSLHSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQNRSSA 116 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCc
Confidence 4666678888888888888888887543 34555556789999999999999999888888888766321 124
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 031806 104 VSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAP 142 (152)
Q Consensus 104 ~~~~~k~~~~KL~~df~~~l~~Fq~~Qr~~~ekek~~~~ 142 (152)
+.+..+.+..=|.+-|..++..|+.+|..|-++.+..+.
T Consensus 117 ~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~ 155 (297)
T KOG0810|consen 117 GLRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKERIQ 155 (297)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777778999999999999999998888665443
No 7
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=95.18 E-value=0.059 Score=44.19 Aligned_cols=106 Identities=13% Similarity=0.102 Sum_probs=73.6
Q ss_pred CccccHHHHHHHHHHHHHhhHHHHHHHHHhcC--CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhH
Q 031806 31 SQSQDPSQAVAAAIFQINTAVSSFYRLVNSLG--TPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIR 108 (152)
Q Consensus 31 ~ef~~l~~~Is~~if~In~~vs~l~kl~~~LG--T~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~ 108 (152)
|-|......|...+..+-.++..+.+-...-- .+.|. +. -...+.+|.+.++.+|.+...+.......-+.
T Consensus 34 p~~i~~~~~v~~~l~~vrr~~~~l~~~y~k~~~p~f~~k---~~----k~~ei~~L~~kv~~~l~~~~ki~~~~~~~~~s 106 (283)
T COG5325 34 PTFILSAASVDQELTAVRRSISRLGKVYAKHTEPSFSDK---SE----KEDEIDELSKKVNQDLQRCEKILKTKYKNLQS 106 (283)
T ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCcchhh---HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778889999999999999888887444322 22222 22 12345667777777777776655322223456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 031806 109 KIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPF 143 (152)
Q Consensus 109 k~~~~KL~~df~~~l~~Fq~~Qr~~~ekek~~~~~ 143 (152)
.+.+.||.+|++..+..++.+|++.+.-++..+..
T Consensus 107 ~~~~~kll~~~nt~~~~~~~iq~~~aq~r~~~~~~ 141 (283)
T COG5325 107 SFLQSKLLRDLNTECMEGQRIQQKSAQFRKYQVLQ 141 (283)
T ss_pred HHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHH
Confidence 67789999999999999999999988776555443
No 8
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.80 E-value=22 Score=29.72 Aligned_cols=107 Identities=15% Similarity=0.184 Sum_probs=81.2
Q ss_pred CCccccHHHHHHHHHHHHHhhHHHHHHHHH-h-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchh
Q 031806 30 QSQSQDPSQAVAAAIFQINTAVSSFYRLVN-S-LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPI 107 (152)
Q Consensus 30 ~~ef~~l~~~Is~~if~In~~vs~l~kl~~-~-LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~ 107 (152)
+|.|-..++.|...|.++-.++..|.+.-. . +-+..|..+=-+.|..+.+.+.++++.+-..|+.+.+..+. ..+.
T Consensus 56 pP~wvd~~~ev~~~l~rvrrk~~eLgk~~~Khl~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~--~~~~ 133 (305)
T KOG0809|consen 56 PPAWVDVAEEVDYYLSRVRRKIDELGKAHAKHLRPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASLNQ--LSPS 133 (305)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CChH
Confidence 588999999999999999999888877432 2 33445555557788999999999999999999999987652 1222
Q ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031806 108 RKIA----DAKLAKDFQSVLKEFQKAQRLAAERET 138 (152)
Q Consensus 108 ~k~~----~~KL~~df~~~l~~Fq~~Qr~~~ekek 138 (152)
.... .-=|.-++++...+|...|..|..+-+
T Consensus 134 e~~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~ 168 (305)
T KOG0809|consen 134 ERLLRKNAQGYLALQLQTLSREFRGLQSKYLKRLR 168 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2222 233788889999999999999887743
No 9
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=83.61 E-value=11 Score=32.23 Aligned_cols=84 Identities=19% Similarity=0.306 Sum_probs=54.8
Q ss_pred HHHHHHhcC--CCCCcHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHH-HHHHHHHHHHHHH
Q 031806 54 FYRLVNSLG--TPKDTLDLRDKL---HKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAK-LAKDFQSVLKEFQ 127 (152)
Q Consensus 54 l~kl~~~LG--T~~Dt~~lR~kl---~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~~~K-L~~df~~~l~~Fq 127 (152)
++|..-+|- -..|..+.|.+| +.....|.....++...|.+|..=... .--..-.++| |...|...+++|.
T Consensus 200 vERV~PqLKv~~~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~---~lekI~sREk~iN~qle~l~~eYr 276 (359)
T PF10498_consen 200 VERVLPQLKVTIRADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISK---TLEKIESREKYINNQLEPLIQEYR 276 (359)
T ss_pred HHHHhhhheeeccCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHH
Confidence 555555552 356667888877 666677777888888888887763211 1123333555 7777888888888
Q ss_pred HHHHHHHHHHhcc
Q 031806 128 KAQRLAAERETTY 140 (152)
Q Consensus 128 ~~Qr~~~ekek~~ 140 (152)
.+|.+.++-+..+
T Consensus 277 ~~~~~ls~~~~~y 289 (359)
T PF10498_consen 277 SAQDELSEVQEKY 289 (359)
T ss_pred HHHHHHHHHHHHH
Confidence 8888776665443
No 10
>PRK15330 cell invasion protein SipD; Provisional
Probab=78.12 E-value=12 Score=31.68 Aligned_cols=76 Identities=12% Similarity=0.110 Sum_probs=57.7
Q ss_pred cccHHHHHHHHHHHHHhh-HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHH
Q 031806 33 SQDPSQAVAAAIFQINTA-VSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIA 111 (152)
Q Consensus 33 f~~l~~~Is~~if~In~~-vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~ 111 (152)
+..|+..|+..|-.|+.+ +.-+.. +...-.+.++++++.|.++..|...-...+..++-
T Consensus 131 ~aELW~~Is~sIssIk~dYldvYa~--------------------vVk~YTd~yQsfne~lSkls~~IsaGsDGntIkFd 190 (343)
T PRK15330 131 DAEIWDMVSQNISAIGDSYLGVYEN--------------------VVAVYTDFYQAFSDILSKMGGWLLPGKDGNTVKLD 190 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHhhhcccCCCCCeeeec
Confidence 567899999999999877 544444 44456788899999999999887631223448888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 031806 112 DAKLAKDFQSVLKEFQK 128 (152)
Q Consensus 112 ~~KL~~df~~~l~~Fq~ 128 (152)
.+.|.+++...+..|..
T Consensus 191 ~~slk~~i~~lidKY~~ 207 (343)
T PRK15330 191 VTSLKNDLNSLVNKYNQ 207 (343)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 89999999999988863
No 11
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.11 E-value=26 Score=31.10 Aligned_cols=103 Identities=13% Similarity=0.135 Sum_probs=72.5
Q ss_pred CccccHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCc----------------H------HHHHHHHHHHHHHHHHHHHH
Q 031806 31 SQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDT----------------L------DLRDKLHKTRLHIGQLVKDT 88 (152)
Q Consensus 31 ~ef~~l~~~Is~~if~In~~vs~l~kl~~~LGT~~Dt----------------~------~lR~kl~~~~~~t~~l~k~t 88 (152)
-||..-+.+-..-|++|-.-...|++..+.+|...+- + .+-.+||.....+-+++.+|
T Consensus 392 kEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rsfavtdellf~sakhddhvR~aykllt~iH~nc~ei~E~i~~t 471 (521)
T KOG1937|consen 392 KEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRSFAVTDELLFMSAKHDDHVRLAYKLLTRIHLNCMEILEMIRET 471 (521)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4677778888888999999999999988887644331 2 35567799999999999888
Q ss_pred HHHHHHhhhhccCCC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031806 89 SSKLKQASEADHHTE--VSPIRKIADAKLAKDFQSVLKEFQKAQRLA 133 (152)
Q Consensus 89 ~~~lk~L~~~~~~~~--~~~~~k~~~~KL~~df~~~l~~Fq~~Qr~~ 133 (152)
+...+.+..+...-+ .-+..-...+||.-|+++.=++-+.++.++
T Consensus 472 g~~~revrdlE~qI~~E~~k~~l~slEkl~~Dyqairqen~~L~~~i 518 (521)
T KOG1937|consen 472 GALKREVRDLESQIYVEEQKQYLKSLEKLHQDYQAIRQENDQLFSEI 518 (521)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 887777666543111 233445556788888877777666666554
No 12
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=73.56 E-value=29 Score=24.53 Aligned_cols=55 Identities=15% Similarity=0.218 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHhcCCCCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031806 40 VAAAIFQINTAVSSFYRLVNSLGTPKDTL--DLRDKLHKTRLHIGQLVKDTSSKLKQ 94 (152)
Q Consensus 40 Is~~if~In~~vs~l~kl~~~LGT~~Dt~--~lR~kl~~~~~~t~~l~k~t~~~lk~ 94 (152)
|....-.++..+.+++.+++.-|+..+.. +||.+++....+++.-+..+...+.+
T Consensus 10 ~~~l~~el~~L~d~lEevL~ssg~~a~~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~ 66 (104)
T COG4575 10 IDQLLAELQELLDTLEEVLKSSGSLAGDEAEELRSKAESALKEARDRLGDTGDAVVQ 66 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 34446677778889999999999877644 59999988888888888777665543
No 13
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=70.84 E-value=41 Score=25.09 Aligned_cols=90 Identities=19% Similarity=0.288 Sum_probs=59.2
Q ss_pred cccHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHH
Q 031806 33 SQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIAD 112 (152)
Q Consensus 33 f~~l~~~Is~~if~In~~vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~~ 112 (152)
++.-+..+...+..+...++.|+.-+..|-+..-+.+|+..|..+...+..|- ..|..|..-. ..++.
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~----~kL~~l~~~~--~~vs~------ 144 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELE----EKLEKLRSGS--KPVSP------ 144 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH----HHHHHHHhCC--CCCCH------
Confidence 44446777778888888899998888888888888899999988888875554 4444444411 12222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031806 113 AKLAKDFQSVLKEFQKAQRLAAERET 138 (152)
Q Consensus 113 ~KL~~df~~~l~~Fq~~Qr~~~ekek 138 (152)
.|...+...|..+.+....+.|
T Consensus 145 ----ee~~~~~~~~~~~~k~w~kRKr 166 (169)
T PF07106_consen 145 ----EEKEKLEKEYKKWRKEWKKRKR 166 (169)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHH
Confidence 2444555566666665555544
No 14
>PHA03172 UL37 tegument protein; Provisional
Probab=70.42 E-value=64 Score=30.95 Aligned_cols=66 Identities=11% Similarity=0.191 Sum_probs=55.2
Q ss_pred ccHHHHHHHHHHHHHhhHHHHHHHHHh---------------------cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031806 34 QDPSQAVAAAIFQINTAVSSFYRLVNS---------------------LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKL 92 (152)
Q Consensus 34 ~~l~~~Is~~if~In~~vs~l~kl~~~---------------------LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~l 92 (152)
..+.+.|+..+..+-..+..|+++..+ ||+.+| .++.+-|-.....++.++++|++.|
T Consensus 779 ~~l~~~is~av~~l~s~~~~lr~fFscrf~~~~~~aV~i~~~g~~~~~lG~Wrl-~dVm~Ai~~~~n~~e~~i~~T~~Al 857 (951)
T PHA03172 779 AKAAEEISKAVQDLLSKLANARDLFSQRANADDKGAVSFDAAGPDGKELGHWED-DSVMQAIWKAVNFAEAAIRHTEKAI 857 (951)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhceeecCCCCeEEEecCCCCCCCCCeeeh-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888888764 899998 4889999999999999999999999
Q ss_pred HHhhhhcc
Q 031806 93 KQASEADH 100 (152)
Q Consensus 93 k~L~~~~~ 100 (152)
..+.++..
T Consensus 858 r~ceal~~ 865 (951)
T PHA03172 858 RALDATKR 865 (951)
T ss_pred HHHHHHHh
Confidence 99988764
No 15
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=69.69 E-value=31 Score=23.20 Aligned_cols=60 Identities=15% Similarity=0.221 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhccCCCCchhHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 031806 69 DLRDKLHKTRLHIGQLVKDTSSK--LKQASEADHHTEVSPIRKIA--DAKLAKDFQSVLKEFQKAQRL 132 (152)
Q Consensus 69 ~lR~kl~~~~~~t~~l~k~t~~~--lk~L~~~~~~~~~~~~~k~~--~~KL~~df~~~l~~Fq~~Qr~ 132 (152)
.+..++..+...|++.++..+.. ......... -...|+. ...+..+|+.+.+.|...++.
T Consensus 37 ~~~~~~~~l~k~~~~~l~~l~~~~~~~~~~~~~k----~~~~KL~~df~~~l~~fq~~q~~~~~~~k~ 100 (102)
T PF14523_consen 37 QLIQKTNQLIKEISELLKKLNSLSSDRSNDRQQK----LQREKLSRDFKEALQEFQKAQRRYAEKEKQ 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSH----HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46666666777777666665444 111111000 0122333 244677777777777766664
No 16
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=68.37 E-value=43 Score=28.86 Aligned_cols=78 Identities=23% Similarity=0.278 Sum_probs=45.4
Q ss_pred HHHHHHhcCCCCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHH--HH---HHHHHHHHHHHH
Q 031806 54 FYRLVNSLGTPKDTL--DLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIAD--AK---LAKDFQSVLKEF 126 (152)
Q Consensus 54 l~kl~~~LGT~~Dt~--~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~~--~K---L~~df~~~l~~F 126 (152)
|+.|-..|.. .|.. .+-++|.+.+..|-=|==..++.|+-++.++.-.+.++..||.. .| |...|+.....|
T Consensus 10 LeeLe~kLa~-~d~~Kd~V~~~I~ea~~sILPlRL~FNeFi~tma~Ie~~~~~s~qeKFl~IR~KlleL~~~lQ~lS~df 88 (379)
T PF11593_consen 10 LEELEEKLAS-NDNSKDSVMDKISEAQDSILPLRLQFNEFIQTMANIEEMNNKSPQEKFLLIRSKLLELYNKLQELSSDF 88 (379)
T ss_pred HHHHHHHHhc-CCchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455552 3321 24444444444433333455667777777765445677777764 44 677888888888
Q ss_pred HHHHHH
Q 031806 127 QKAQRL 132 (152)
Q Consensus 127 q~~Qr~ 132 (152)
+++|=.
T Consensus 89 ~~LqPL 94 (379)
T PF11593_consen 89 QKLQPL 94 (379)
T ss_pred HHhchH
Confidence 888854
No 17
>PF07730 HisKA_3: Histidine kinase; InterPro: IPR011712 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represetns the dimerisation and phosphoacceptor domain of a sub-family of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO.; GO: 0000155 two-component sensor activity, 0046983 protein dimerization activity, 0000160 two-component signal transduction system (phosphorelay), 0016021 integral to membrane; PDB: 3GIE_B 3GIG_A 3EHJ_B 3EHH_B 3GIF_B 3EHF_B 3EHG_A.
Probab=67.72 E-value=26 Score=21.54 Aligned_cols=57 Identities=12% Similarity=0.262 Sum_probs=40.4
Q ss_pred cHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031806 35 DPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQAS 96 (152)
Q Consensus 35 ~l~~~Is~~if~In~~vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~ 96 (152)
.|-+.|...++-|.-.+..+...+ ..+.++++..+..+.+.+.+.+.++...+..|.
T Consensus 8 eLHD~v~q~L~~i~~~l~~~~~~~-----~~~~~~~~~~l~~i~~~~~~~~~~~R~~~~~Lr 64 (68)
T PF07730_consen 8 ELHDGVGQSLTAIKMQLEALRRRL-----ADDPEEAREELEEIRELLREALQELRRIIHELR 64 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-----TT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHhhHHHHHHHHHHHHHHHHHhhh-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467788888888877776666554 355567888888888888777777776666554
No 18
>PF05227 CHASE3: CHASE3 domain; InterPro: IPR007891 CHASE3 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE3 domains are found in histidine kinases, adenylate cyclases, methyl-accepting chemotaxis proteins and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE3 domains are not known at this time [].; PDB: 3VA9_A.
Probab=67.70 E-value=38 Score=23.50 Aligned_cols=85 Identities=14% Similarity=0.252 Sum_probs=49.2
Q ss_pred HHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHH----HHHHHH
Q 031806 42 AAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIA----DAKLAK 117 (152)
Q Consensus 42 ~~if~In~~vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~----~~KL~~ 117 (152)
.....|...+..|..++ .|.|..+.+|..+...+..-+......|.-..... ......+. -..+..
T Consensus 46 ~~~~~~~~~l~~L~~l~------~~~p~q~~~l~~l~~~~~~~~~~~~~~i~~~~~~~----~~~a~~~~~~~~~~~~~~ 115 (138)
T PF05227_consen 46 EARARLEKALAQLRQLV------QDNPEQQERLDQLEELIDQWRELLEPQIALRKSGG----MEAARALVNSGEGKQLMD 115 (138)
T ss_dssp HHHHHHHHHHHHHHHHT------TT-HHHHHHHHHHHHHHHHHHHHHHHHHHH-GG-G----HHHHHHHHHHHGGG-HHH
T ss_pred HHHHHHHHHHHHHHHHh------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----hHHHHHHHHhcccHHHHH
Confidence 33444555555555443 37888999998888888888855555544333311 01111111 123788
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 031806 118 DFQSVLKEFQKAQRLAAER 136 (152)
Q Consensus 118 df~~~l~~Fq~~Qr~~~ek 136 (152)
.|...+..|+.........
T Consensus 116 ~i~~~~~~~~~~e~~~l~~ 134 (138)
T PF05227_consen 116 QIRQLLEQIQAEEQRLLKQ 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8999999998887765543
No 19
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=65.37 E-value=24 Score=21.54 Aligned_cols=54 Identities=13% Similarity=0.294 Sum_probs=33.2
Q ss_pred HHHHHHhhHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031806 43 AIFQINTAVSSFYRLVNSLGTPKDTL-DLRDKLHKTRLHIGQLVKDTSSKLKQAS 96 (152)
Q Consensus 43 ~if~In~~vs~l~kl~~~LGT~~Dt~-~lR~kl~~~~~~t~~l~k~t~~~lk~L~ 96 (152)
.|-.|...|..|..+...||+--+.. .+-++|....+.+...++.....|+++.
T Consensus 5 ~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~ 59 (63)
T PF05739_consen 5 ELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKAL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666555443333 4667777777777777776666666554
No 20
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=62.50 E-value=27 Score=25.63 Aligned_cols=53 Identities=19% Similarity=0.298 Sum_probs=34.2
Q ss_pred cccHHHHHHHHHHHHHhhHHH-HHHHHHhcC--CCCCcHHHHHHHHHHHHHHHHHH
Q 031806 33 SQDPSQAVAAAIFQINTAVSS-FYRLVNSLG--TPKDTLDLRDKLHKTRLHIGQLV 85 (152)
Q Consensus 33 f~~l~~~Is~~if~In~~vs~-l~kl~~~LG--T~~Dt~~lR~kl~~~~~~t~~l~ 85 (152)
+..+...+....-++-+.+-. +.+.++.|| |..|-..|+.+|..+...+..|.
T Consensus 74 ~~~~~~~~~~~~dklE~~fd~rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~~l~ 129 (132)
T PF05597_consen 74 VDDVKERATGQWDKLEQAFDERVARALNRLGVPSRKDVEALSARIDQLTAQVERLA 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666666666666544 777788888 55566677777777776665554
No 21
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.18 E-value=81 Score=29.08 Aligned_cols=70 Identities=20% Similarity=0.245 Sum_probs=46.5
Q ss_pred hcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHH-HHHHHHHHHHHHHHHH---HHHHH
Q 031806 60 SLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAK-LAKDFQSVLKEFQKAQ---RLAAE 135 (152)
Q Consensus 60 ~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~~~K-L~~df~~~l~~Fq~~Q---r~~~e 135 (152)
.||+.+|. -+.|..+...++.++-+.|+.++....-. ..-+.+.++ |+++|.+.+++|-.+| +.+..
T Consensus 386 ~~d~t~d~---id~i~~l~k~~na~V~~~N~ri~nf~k~~------~~sk~~le~~~v~~~~~~VQe~~~Y~g~ekk~n~ 456 (758)
T COG4694 386 KLDSTKDE---IDAIKDLIKKANAQVVNHNERIKNFEKQK------KSSKEQLEKFLVNEFKSDVQEYNKYCGLEKKINN 456 (758)
T ss_pred ccccchhH---HHHHHHHHHHHHHHHHHHhhhhhhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 35666653 44566677777777777777777666532 235677777 8999999999987544 34444
Q ss_pred HHh
Q 031806 136 RET 138 (152)
Q Consensus 136 kek 138 (152)
.|+
T Consensus 457 LE~ 459 (758)
T COG4694 457 LEK 459 (758)
T ss_pred HHH
Confidence 443
No 22
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=57.71 E-value=53 Score=21.78 Aligned_cols=28 Identities=14% Similarity=0.345 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031806 70 LRDKLHKTRLHIGQLVKDTSSKLKQASE 97 (152)
Q Consensus 70 lR~kl~~~~~~t~~l~k~t~~~lk~L~~ 97 (152)
+-..+..+.++++++..+++..+.+++.
T Consensus 45 i~~e~~~ll~~~n~l~~dv~~k~~~v~~ 72 (90)
T PF06103_consen 45 ITKEINDLLHNTNELLEDVNEKLEKVDP 72 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3344444444444444444444433333
No 23
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=56.44 E-value=72 Score=26.95 Aligned_cols=81 Identities=20% Similarity=0.249 Sum_probs=50.8
Q ss_pred HHHHHHhcC--CCCCcHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHH-HHHHHHHHHHHHH
Q 031806 54 FYRLVNSLG--TPKDTLDLRDKL---HKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAK-LAKDFQSVLKEFQ 127 (152)
Q Consensus 54 l~kl~~~LG--T~~Dt~~lR~kl---~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~~~K-L~~df~~~l~~Fq 127 (152)
++|.+-+|- -..|..+.|-+| |.+...|-+-++++.--|++|..=... +--..-.++| |-+++...+++|.
T Consensus 207 vERVlPQLKVt~k~DakDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~---~LEkI~SREK~lNnqL~~l~q~fr 283 (384)
T KOG0972|consen 207 VERVLPQLKVTLKQDAKDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITK---ALEKIASREKSLNNQLASLMQKFR 283 (384)
T ss_pred HHHhhhhheehhccccHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555553 346777787666 555666666667777777777653210 1112333566 7888888888888
Q ss_pred HHHHHHHHHH
Q 031806 128 KAQRLAAERE 137 (152)
Q Consensus 128 ~~Qr~~~eke 137 (152)
+++-..++..
T Consensus 284 ~a~~~lse~~ 293 (384)
T KOG0972|consen 284 RATDTLSELR 293 (384)
T ss_pred HHHHHHHHHH
Confidence 8888766554
No 24
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=56.11 E-value=66 Score=22.37 Aligned_cols=70 Identities=16% Similarity=0.255 Sum_probs=51.5
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031806 65 KDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERET 138 (152)
Q Consensus 65 ~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~~~KL~~df~~~l~~Fq~~Qr~~~ekek 138 (152)
+-+.++++.|..++++...+.+.-.+-+-++..-.. =...-|...-|...|.....+|+.-+-...-++.
T Consensus 3 k~~s~I~~eI~kLqe~lk~~e~keAERigRiAlKAG----LgeieI~d~eL~~aFeeiAaRFR~g~~~~~g~~~ 72 (98)
T PRK13848 3 KPSSKIREEIAKLQEQLKQAETREAERIGRIALKAG----LGEIEIEEAELQAAFEELAKRFRGGKGAATGKRN 72 (98)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----ccccccCHHHHHHHHHHHHHHHhcCCCccccccc
Confidence 456789999999999999999999999988776321 0112234566999999999999876555444443
No 25
>PF01017 STAT_alpha: STAT protein, all-alpha domain; InterPro: IPR013800 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the all-alpha helical domain, which consists of four long helices arranged in a bundle with a left-handed twist (coiled-coil), which in turn forms a right-handed superhelix.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 3CWG_B 1BG1_A 1Y1U_B.
Probab=54.57 E-value=49 Score=25.25 Aligned_cols=54 Identities=19% Similarity=0.247 Sum_probs=41.7
Q ss_pred CccccHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHH
Q 031806 31 SQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVK 86 (152)
Q Consensus 31 ~ef~~l~~~Is~~if~In~~vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k 86 (152)
...+.+++.++..|+++...+..++.+...+--. .+.+-+.+..+.+.++.|++
T Consensus 124 D~LQ~wfe~LAe~l~qlrqqlk~l~~l~~k~~~~--~d~~~~~~~~L~~~v~~ll~ 177 (182)
T PF01017_consen 124 DQLQNWFESLAEILWQLRQQLKKLEELQQKLTYE--NDPIPDQLPQLNERVTELLK 177 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--T--T-THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCchhhhHHHHHHHHHHHHH
Confidence 3467789999999999999999999999987444 44577777777777777765
No 26
>TIGR02553 SipD_IpaD_SspD type III effector protein IpaD/SipD/SspD. These proteins are found within type III secretion operons and have been shown to be secreted by that system.
Probab=53.71 E-value=85 Score=26.38 Aligned_cols=75 Identities=11% Similarity=0.045 Sum_probs=55.1
Q ss_pred cccHHHHHHHHHHHHHhh-HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHH
Q 031806 33 SQDPSQAVAAAIFQINTA-VSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIA 111 (152)
Q Consensus 33 f~~l~~~Is~~if~In~~-vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~ 111 (152)
...|+..|+..|-.|+.+ +.-+.. +...-.+.++++++.|.++..|...-......++-
T Consensus 103 ~aelw~~Is~~I~~Ik~dYldvYa~--------------------lvk~YTd~yQ~fn~~lSkls~~IsaG~DGn~VkFd 162 (308)
T TIGR02553 103 DDPIWDMLSDVIGKIGDSYLGVYEN--------------------VVEGYTDFYQAFSDILSKMQDWISPGKDGNNVKLD 162 (308)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHhhhcccCCCCCeeeeC
Confidence 456788888877777766 433333 44556788899999999998887632223358888
Q ss_pred HHHHHHHHHHHHHHHH
Q 031806 112 DAKLAKDFQSVLKEFQ 127 (152)
Q Consensus 112 ~~KL~~df~~~l~~Fq 127 (152)
..+|.+++...+..|.
T Consensus 163 ~~~lk~~l~~~~~Ky~ 178 (308)
T TIGR02553 163 VGKLKALLQQLIDHLP 178 (308)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8889999999999988
No 27
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=53.51 E-value=91 Score=24.89 Aligned_cols=60 Identities=20% Similarity=0.317 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031806 72 DKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAA 134 (152)
Q Consensus 72 ~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~~~KL~~df~~~l~~Fq~~Qr~~~ 134 (152)
+....+.++...|.++....-++|..... +++ ..+-+-+.+.++|...+.+++++|.++.
T Consensus 151 ~~~~~~~~~~~kL~~el~~~~~~Le~~~~--~~~-al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 151 EENDKLKADLEKLETELEKKQKKLEKAQK--KVD-ALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHH--HHH-HHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 33444445555555555555555555432 122 2455667788999999999999998765
No 28
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=53.27 E-value=1.1e+02 Score=24.03 Aligned_cols=23 Identities=13% Similarity=0.286 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031806 115 LAKDFQSVLKEFQKAQRLAAERE 137 (152)
Q Consensus 115 L~~df~~~l~~Fq~~Qr~~~eke 137 (152)
-+.||+.+|..|=..|-.++.+.
T Consensus 190 rv~dfk~~l~~~le~~i~~q~~~ 212 (224)
T cd07623 190 RVKDFKDIIIKYLESLLNTQQQL 212 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 38899999999999888776654
No 29
>PF08066 PMC2NT: PMC2NT (NUC016) domain; InterPro: IPR012588 Exosomes are nano-compartments that function in the degradation or processing of RNA (including mRNA, rRNA, snRNA and snoRNA) [, ]. Exosomes occur in both archaea and eukaryotes, and have a similar overall structure to each other and to bacterial/organelle PNPases (polynucleotide phosphorylases; 2.7.7.8 from EC) [], consisting of a barrel structure composed of a hexameric ring of PH domains that act as a degradation chamber, and an S1-domain/KH-domain containing cap that binds the RNA substrate (and sometimes accessory proteins) in order to regulate and restrict entry into the degradation chamber []. There are two types of exosomes in eukaryotes, cytoplasmic exosomes that are responsible for 3'-5' exoribonuclease degradation of mRNAs, and nuclear exosomes that degrade pre-mRNAs (such as nonsense transcripts) and degrade rRNAs, snRNAs and snoRNAs. Unstructured RNA substrates feed in through the pore made by the S1 domains, are degraded by the PH domain ring, and exit as nucleotides via the PH pore at the opposite end of the barrel [, ]. There are several accessory proteins that help degrade, unwind or polyadenylate RNA substrate before they enter the exosome. This entry represents the N-terminal domain of Rrp6 (exosome component 10 in humans), a nuclear exosome accessory factor that interacts with the bottom of the hexameric PH-ring opposite the cap. Rrp6 functions as a hydrolytic exonuclease, and is homologous to RNase-D in Escherichia coli. More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0006396 RNA processing, 0000176 nuclear exosome (RNase complex)
Probab=53.20 E-value=68 Score=21.60 Aligned_cols=66 Identities=8% Similarity=0.130 Sum_probs=38.4
Q ss_pred CCccccHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031806 30 QSQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQA 95 (152)
Q Consensus 30 ~~ef~~l~~~Is~~if~In~~vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L 95 (152)
+|+|....+..+..|-.+-+.+-........+..+.|..++-++...+.+..-.|+..+...|-++
T Consensus 23 dp~f~~~ld~~s~rll~l~n~ll~~~~~~~~~~~~~~~~d~d~~~~~vvd~~D~LlEk~D~~LDe~ 88 (91)
T PF08066_consen 23 DPEFAESLDEQSQRLLSLINSLLKSAGSKSNISSPDDVDDVDERWDSVVDVNDSLLEKADISLDEL 88 (91)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccHHHHHHHHHHHHHHHHHHHhHHHHhH
Confidence 577877777777766666555433333333333333444566676666666666666666655443
No 30
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=52.57 E-value=1.3e+02 Score=24.63 Aligned_cols=66 Identities=14% Similarity=0.227 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031806 69 DLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERE 137 (152)
Q Consensus 69 ~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~~~KL~~df~~~l~~Fq~~Qr~~~eke 137 (152)
.+|.+|..-.+.|..|-.....+++-+.+--- .....+.|-+-...-|-..++.|..++..+-+-+
T Consensus 62 ~~~~~ldnf~s~t~~Lq~~~k~di~~~e~~~i---hl~~k~aQae~~r~Kf~~~I~~yr~i~~~yree~ 127 (280)
T COG5074 62 KLRRSLDNFSSQTTDLQRNLKKDIKSAERDGI---HLANKQAQAENVRQKFLKLIQDYRIIDSNYREEE 127 (280)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHhccc---chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 57788888888888888777777776655210 1122344555566678888888988888765543
No 31
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=51.32 E-value=55 Score=27.66 Aligned_cols=60 Identities=12% Similarity=0.188 Sum_probs=36.0
Q ss_pred CccccHHHHHHHHHHHHHhhHHH-HHHHHHhcC--CCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 031806 31 SQSQDPSQAVAAAIFQINTAVSS-FYRLVNSLG--TPKDTLDLRDKLHKTRLHIGQLVKDTSS 90 (152)
Q Consensus 31 ~ef~~l~~~Is~~if~In~~vs~-l~kl~~~LG--T~~Dt~~lR~kl~~~~~~t~~l~k~t~~ 90 (152)
++|......+.+..-.+-..... ++..+..|| |..|-.++-++|+++...+..|-|++.+
T Consensus 252 ~efak~~G~lvna~m~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~ 314 (320)
T TIGR01834 252 EENAKVHGKFINALMRLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGD 314 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55655555555555555554333 455666666 5556666777777777777666665443
No 32
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.60 E-value=49 Score=27.27 Aligned_cols=57 Identities=9% Similarity=0.202 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031806 39 AVAAAIFQINTAVSSFYRLVNSLGTPKDTLD-LRDKLHKTRLHIGQLVKDTSSKLKQA 95 (152)
Q Consensus 39 ~Is~~if~In~~vs~l~kl~~~LGT~~Dt~~-lR~kl~~~~~~t~~l~k~t~~~lk~L 95 (152)
.|..||.+|...+..|+.+.--+|+--|.+. .-++|+...+...-.|...+..+++|
T Consensus 215 eiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~kL 272 (273)
T KOG3065|consen 215 EIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKKL 272 (273)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHhc
Confidence 8999999999999999999999999888774 66888888888888888888877765
No 33
>PF14966 DNA_repr_REX1B: DNA repair REX1-B
Probab=50.27 E-value=82 Score=21.72 Aligned_cols=52 Identities=6% Similarity=0.098 Sum_probs=36.7
Q ss_pred CccccHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHH
Q 031806 31 SQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLV 85 (152)
Q Consensus 31 ~ef~~l~~~Is~~if~In~~vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~ 85 (152)
+.|..++..|......|...|-.++..+. ...+.++|-..|..+++.=.+-.
T Consensus 36 ~~y~~~~~~iT~~f~~~S~ei~~ie~~L~---~~~~~~~la~~i~~lQ~~Ek~KL 87 (97)
T PF14966_consen 36 EAYRQLCHEITQEFSAISKEILAIEAELR---DEHERPDLAELIRELQEQEKEKL 87 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cccCCHHHHHHHHHHHHHHHHHH
Confidence 46888888888888888877777776554 35666777777777776544433
No 34
>TIGR02780 TrbJ_Ti P-type conjugative transfer protein TrbJ. The TrbJ protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbJ is a homolog of the F-type TraE protein (which is believed to be an inner membrane pore-forming protein, TIGR02761) as well as the vir system VirB5 protein.
Probab=48.54 E-value=1.4e+02 Score=23.89 Aligned_cols=53 Identities=6% Similarity=0.201 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 031806 36 PSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSS 90 (152)
Q Consensus 36 l~~~Is~~if~In~~vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~ 90 (152)
..+.+..+|.++.+.+..++.++..+-...|. +-+.+.....++..|++....
T Consensus 44 ~~~q~~~Qi~qlqnQiq~y~nql~n~~~L~~~--~~~~~~~~l~~l~~L~~q~q~ 96 (246)
T TIGR02780 44 SVEQLNNQIQQLQNQIQRYENQLKNTMSLPAN--IWNRLESSLQKLTNIISQAQA 96 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 35667777888888888888888888887775 567776666666666655444
No 35
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=47.80 E-value=92 Score=21.56 Aligned_cols=63 Identities=16% Similarity=0.290 Sum_probs=47.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031806 67 TLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLA 133 (152)
Q Consensus 67 t~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~~~KL~~df~~~l~~Fq~~Qr~~ 133 (152)
..+|+..|..+++....+.+.-++.|-++..-.. -...-+.-+-|...|..+..+|+.-.+..
T Consensus 4 ~s~I~~eIekLqe~lk~~e~keaERigr~AlKaG----L~eieI~d~eL~~~FeeIa~RFrk~~~~~ 66 (92)
T PF07820_consen 4 SSKIREEIEKLQEQLKQAETKEAERIGRIALKAG----LGEIEISDAELQAAFEEIAARFRKGKKKQ 66 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----cccccCCHHHHHHHHHHHHHHHhcccccc
Confidence 4579999999999999999999998888766321 11123445668999999999998766553
No 36
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.23 E-value=1.5e+02 Score=23.61 Aligned_cols=92 Identities=9% Similarity=0.136 Sum_probs=53.3
Q ss_pred cHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCch--hHHHHH
Q 031806 35 DPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSP--IRKIAD 112 (152)
Q Consensus 35 ~l~~~Is~~if~In~~vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~--~~k~~~ 112 (152)
.|.+.+-..+.++-..+..+++..+. ..++.+...+..-|..+...+.++.....+.+.+. .-++..
T Consensus 3 ~ly~~t~~~~~k~q~~l~rlE~~~~~-----------~e~~~v~~~i~~sI~~~~s~~~rl~~~~~~epp~~rq~~rlr~ 71 (213)
T KOG3251|consen 3 ALYQSTNRQLDKLQRGLIRLERTIKT-----------QEVSAVENSIQRSIDQYASRCQRLDVLVSKEPPKSRQAARLRV 71 (213)
T ss_pred hHHHHHHHHHHHHHHHHHHHHccccc-----------cchHHHHHHHHHhHHHHHHHHHHHHhHhhcCCCCcHHHHHHHH
Confidence 34555555555555555555543332 34555666677777777777777777654433333 234446
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031806 113 AKLAKDFQSVLKEFQKAQRLAAERE 137 (152)
Q Consensus 113 ~KL~~df~~~l~~Fq~~Qr~~~eke 137 (152)
+-|.-||...-...+.+..+-..|+
T Consensus 72 dQl~~d~~~l~~~l~~~~~R~~~r~ 96 (213)
T KOG3251|consen 72 DQLLEDVEHLQTSLRTSMNRNNRRE 96 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 6677777776666666666555544
No 37
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=45.16 E-value=47 Score=20.88 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Q 031806 37 SQAVAAAIFQINTAVSSFYRLVN 59 (152)
Q Consensus 37 ~~~Is~~if~In~~vs~l~kl~~ 59 (152)
.+.+++.|+.+|..|.+|..-++
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~ 27 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVN 27 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777666
No 38
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=44.74 E-value=1.5e+02 Score=23.08 Aligned_cols=98 Identities=13% Similarity=0.173 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHH--hcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHH--
Q 031806 37 SQAVAAAIFQINTAVSSFYRLVN--SLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIAD-- 112 (152)
Q Consensus 37 ~~~Is~~if~In~~vs~l~kl~~--~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~~-- 112 (152)
.......|.+++..+..|++++. .|++ ..+|-.+|+.+......--+.+...-+++.-... ...+......
T Consensus 91 lk~~~~el~k~~~~l~~L~~L~~dknL~e---ReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k--~~~rql~~e~kK 165 (194)
T PF15619_consen 91 LKDKDEELLKTKDELKHLKKLSEDKNLAE---REELQRKLSQLEQKLQEKEKKIQELEKQLELENK--SFRRQLASEKKK 165 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHH
Confidence 44556678888888888888766 3333 3467777777776666666666555555544332 1112111112
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031806 113 -AKLAKDFQSVLKEFQKAQRLAAERETT 139 (152)
Q Consensus 113 -~KL~~df~~~l~~Fq~~Qr~~~ekek~ 139 (152)
..+..+...+..+.+.+.....+|+|.
T Consensus 166 ~~~~~~~~~~l~~ei~~L~~klkEKer~ 193 (194)
T PF15619_consen 166 HKEAQEEVKSLQEEIQRLNQKLKEKERE 193 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 227888899999999999999999875
No 39
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=43.87 E-value=1.1e+02 Score=21.39 Aligned_cols=46 Identities=15% Similarity=0.309 Sum_probs=35.9
Q ss_pred HhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031806 48 NTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLK 93 (152)
Q Consensus 48 n~~vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk 93 (152)
|--...+..+++-++-+.+++++.+.+.+.++.+..|+-+++..|.
T Consensus 56 ~~ll~~~ivllkel~~~Aeseeake~irq~rq~~EklAg~lTkki~ 101 (103)
T COG4847 56 NLLLLYLIVLLKELAVIAESEEAKESIRQVRQEVEKLAGDLTKKIE 101 (103)
T ss_pred HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3335557778889999999999999999888888888877666553
No 40
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=43.84 E-value=73 Score=22.69 Aligned_cols=40 Identities=15% Similarity=0.290 Sum_probs=26.3
Q ss_pred HHHhhH-HHHHHHHHhcC--CCCCcHHHHHHHHHHHHHHHHHH
Q 031806 46 QINTAV-SSFYRLVNSLG--TPKDTLDLRDKLHKTRLHIGQLV 85 (152)
Q Consensus 46 ~In~~v-s~l~kl~~~LG--T~~Dt~~lR~kl~~~~~~t~~l~ 85 (152)
++...+ ..+.+.+..|| |..|-..|+.+|..+...+..|-
T Consensus 74 ~le~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 74 KLEKAFDERVEQALNRLNIPSREEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 444442 23667778877 66666778888888877776653
No 41
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=43.39 E-value=2.4e+02 Score=25.21 Aligned_cols=68 Identities=10% Similarity=0.251 Sum_probs=39.1
Q ss_pred CCccccHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCc---HHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhhc
Q 031806 30 QSQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDT---LDLRDKLHKTRL-------HIGQLVKDTSSKLKQASEAD 99 (152)
Q Consensus 30 ~~ef~~l~~~Is~~if~In~~vs~l~kl~~~LGT~~Dt---~~lR~kl~~~~~-------~t~~l~k~t~~~lk~L~~~~ 99 (152)
++.|..+.+.+......+.-....|......+. -|. .++.++|..+.. .+.++.......-++|..+.
T Consensus 265 d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~--~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~ 342 (563)
T TIGR00634 265 DGSLRELAEQVGNALTEVEEATRELQNYLDELE--FDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLD 342 (563)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Confidence 456667777777777777777777777777663 232 345666654444 33344444444444444443
No 42
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=43.16 E-value=1e+02 Score=20.95 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031806 37 SQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLK 93 (152)
Q Consensus 37 ~~~Is~~if~In~~vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk 93 (152)
+..|-+.|-.||+.+-.|+. ..| .|..+|+.+.+..++.-++..+...
T Consensus 28 ~~~ins~LD~Lns~LD~LE~-------rnD--~l~~~L~~LLesnrq~R~e~~~~~~ 75 (83)
T PF03670_consen 28 YAAINSMLDQLNSCLDHLEQ-------RND--HLHAQLQELLESNRQIRLEFQEQLS 75 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------hhh--HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555555555555555554 333 7999999999988777766655443
No 43
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=41.52 E-value=1e+02 Score=28.62 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=10.8
Q ss_pred CCCcHHHHHHHHHHH
Q 031806 64 PKDTLDLRDKLHKTR 78 (152)
Q Consensus 64 ~~Dt~~lR~kl~~~~ 78 (152)
-.|+|+.|++|+.-.
T Consensus 12 ~ldsp~fre~l~~he 26 (812)
T KOG1451|consen 12 YLDSPDFRERLKCHE 26 (812)
T ss_pred ccCChHHHHHhhHHH
Confidence 358889999985543
No 44
>PRK12715 flgK flagellar hook-associated protein FlgK; Provisional
Probab=40.10 E-value=94 Score=28.72 Aligned_cols=21 Identities=10% Similarity=0.124 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 031806 70 LRDKLHKTRLHIGQLVKDTSS 90 (152)
Q Consensus 70 lR~kl~~~~~~t~~l~k~t~~ 90 (152)
+...|......+|.+++.+.+
T Consensus 157 ~n~~I~~~V~~iN~l~~qIA~ 177 (649)
T PRK12715 157 STLQVTESVKIINRITKELAE 177 (649)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 45
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=39.50 E-value=1.3e+02 Score=23.24 Aligned_cols=29 Identities=14% Similarity=0.296 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 031806 70 LRDKLHKTRLHIGQLVKDTSSKLKQASEA 98 (152)
Q Consensus 70 lR~kl~~~~~~t~~l~k~t~~~lk~L~~~ 98 (152)
|...+.....+...=+++....|..|..+
T Consensus 114 L~~~Vd~~~~eL~~eI~~L~~~i~~le~~ 142 (171)
T PF04799_consen 114 LCQQVDQTKNELEDEIKQLEKEIQRLEEI 142 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444
No 46
>PF07432 Hc1: Histone H1-like protein Hc1; InterPro: IPR010886 This family consists of several bacterial histone H1-like Hc1 proteins, which are found in Chlamydiae and Bacteroidetes species. Chlamydiae are prokaryotic obligate intracellular parasites that undergo a biphasic life cycle involving an infectious, extracellular form known as elementary bodies and an intracellular, replicating form termed reticulate bodies. The gene coding for Hc1 is expressed only during the late stages of the chlamydial life cycle concomitant with the reorganisation of chlamydial reticulate bodies into elementary bodies, suggesting that the Hc1 protein plays a role in the condensation of chlamydial chromatin during intracellular differentiation [].; GO: 0003677 DNA binding
Probab=39.42 E-value=1.3e+02 Score=21.79 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 031806 74 LHKTRLHIGQLVKDTSSKLKQA 95 (152)
Q Consensus 74 l~~~~~~t~~l~k~t~~~lk~L 95 (152)
|.++..++.+|+..+..++.++
T Consensus 2 lKdt~~kmkeL~e~~~~D~~K~ 23 (123)
T PF07432_consen 2 LKDTFKKMKELLESFEADAEKA 23 (123)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778888777777653
No 47
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=38.76 E-value=1.9e+02 Score=26.40 Aligned_cols=67 Identities=15% Similarity=0.238 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC------------CCchhHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 031806 69 DLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHT------------EVSPIRKIADA--KLAKDFQSVLKEFQKAQRLAA 134 (152)
Q Consensus 69 ~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~------------~~~~~~k~~~~--KL~~df~~~l~~Fq~~Qr~~~ 134 (152)
++.++|......|..++.+++..-++...+.... ...-...+.-. -+-.+|..+|..-+++...+.
T Consensus 63 ~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~~f~Ls~~E~~~L~~~~~~v~~~FF~~L~r~~~I~~~c~ 142 (618)
T PF06419_consen 63 QMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFLERFTLSEEEEDALTSGEEPVDDEFFDALDRVQKIHEDCK 142 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777777766665554442110 00000111111 245577777777777776654
Q ss_pred H
Q 031806 135 E 135 (152)
Q Consensus 135 e 135 (152)
.
T Consensus 143 ~ 143 (618)
T PF06419_consen 143 I 143 (618)
T ss_pred H
Confidence 3
No 48
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=38.60 E-value=2.1e+02 Score=24.88 Aligned_cols=55 Identities=9% Similarity=0.167 Sum_probs=29.3
Q ss_pred CccccHHHHHHHHHHHHHhhHHHHHHHHHhcCC----CCCcHHHHHHHHHHHHHHHHHH
Q 031806 31 SQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGT----PKDTLDLRDKLHKTRLHIGQLV 85 (152)
Q Consensus 31 ~ef~~l~~~Is~~if~In~~vs~l~kl~~~LGT----~~Dt~~lR~kl~~~~~~t~~l~ 85 (152)
+++....+.+...+..+...+..|++.+..|-. ....++.+..+..+......+.
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 388 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELK 388 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHH
Confidence 555666666666677776666666666555543 2223344444444444443333
No 49
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=37.41 E-value=1e+02 Score=19.08 Aligned_cols=54 Identities=15% Similarity=0.195 Sum_probs=28.4
Q ss_pred cccHHHHHHHHHHHHHhhHHHHHHHHHhcCCC-C--CcHHHHHHHHHHHHHHHHHHH
Q 031806 33 SQDPSQAVAAAIFQINTAVSSFYRLVNSLGTP-K--DTLDLRDKLHKTRLHIGQLVK 86 (152)
Q Consensus 33 f~~l~~~Is~~if~In~~vs~l~kl~~~LGT~-~--Dt~~lR~kl~~~~~~t~~l~k 86 (152)
.......+....-.|...+..|+..+..|+.. . -.....+....+......++.
T Consensus 9 l~~~a~~~~~~~~~l~~~~~~l~~~~~~l~~~W~G~a~~af~~~~~~~~~~~~~~~~ 65 (86)
T PF06013_consen 9 LRAAAQQLQAQADELQSQLQQLESSIDSLQASWQGEAADAFQDKFEEWNQAFRQLNE 65 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBTSSTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666311 1 122344444444444444443
No 50
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=37.06 E-value=1.7e+02 Score=21.63 Aligned_cols=87 Identities=14% Similarity=0.163 Sum_probs=57.7
Q ss_pred CccccHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHH
Q 031806 31 SQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKI 110 (152)
Q Consensus 31 ~ef~~l~~~Is~~if~In~~vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~ 110 (152)
..|....+.+.+.|-.|.-.|..++++-..|+-|+ .+--++|..+.++..+|+...+. +.-|. --.++
T Consensus 30 ~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~--~ee~e~L~~~L~~g~~LV~k~sk----~~r~n------~~kk~ 97 (147)
T PF05659_consen 30 LSFKSILKRLESTLESIIPIIKEIDKLNVELDRPR--QEEIERLKELLEKGKELVEKCSK----VRRWN------LYKKP 97 (147)
T ss_pred HhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCch--hHHHHHHHHHHHHHHHHHHHhcc----ccHHH------HHhhH
Confidence 46888888888888888888998888888888776 34566777777777777755432 22221 12344
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 031806 111 ADAKLAKDFQSVLKEFQKA 129 (152)
Q Consensus 111 ~~~KL~~df~~~l~~Fq~~ 129 (152)
...+=..++...|..|-.+
T Consensus 98 ~y~~Ki~~le~~l~~f~~v 116 (147)
T PF05659_consen 98 RYARKIEELEESLRRFIQV 116 (147)
T ss_pred hHHHHHHHHHHHHHHHhcc
Confidence 4455556666666666554
No 51
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=36.10 E-value=1.3e+02 Score=20.05 Aligned_cols=22 Identities=14% Similarity=0.213 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031806 69 DLRDKLHKTRLHIGQLVKDTSS 90 (152)
Q Consensus 69 ~lR~kl~~~~~~t~~l~k~t~~ 90 (152)
++|+++....+.+++.+++...
T Consensus 31 ~~r~~~~~~~~~a~~~~~~~~~ 52 (94)
T PF05957_consen 31 EARDRAEEALDDARDRAEDAAD 52 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555554444444444444333
No 52
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=35.77 E-value=2.8e+02 Score=26.12 Aligned_cols=64 Identities=19% Similarity=0.314 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhh-HHHHHHHHHhcCCCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 031806 37 SQAVAAAIFQINTA-VSSFYRLVNSLGTPK-DTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADH 100 (152)
Q Consensus 37 ~~~Is~~if~In~~-vs~l~kl~~~LGT~~-Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~ 100 (152)
++.|+..|-.+-+. +..+=+.+.-++.-+ |...|+.++..+.+.+...-.++...|..|..++.
T Consensus 47 ~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~~~~~v~~~~~~~e~~t~~s~~~L~~ld~ 112 (766)
T PF10191_consen 47 SQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQEQMASVQEEIKAVEQDTAQSMAQLAELDS 112 (766)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH
Confidence 44444444444333 333334444444333 34469999999999999999999999999888863
No 53
>PF06511 IpaD: Invasion plasmid antigen IpaD; InterPro: IPR009483 This family consists of several invasion plasmid antigen IpaD proteins. Entry of Shigella flexneri into epithelial cells and lysis of the phagosome involve the IpaB, IpaC, and IpaD proteins, which are secreted by type III secretion machinery, and appear to form a multi-protein complex capable of inducing the phagocytic event which internalizes the bacterium [].; GO: 0009405 pathogenesis; PDB: 3R9V_B 2JAA_B 2J0O_A 2J0N_B 2P7N_A 2YM9_A 3NZZ_A 3O02_A 3O00_A 2YM0_B ....
Probab=35.13 E-value=2.4e+02 Score=24.08 Aligned_cols=75 Identities=11% Similarity=0.081 Sum_probs=52.0
Q ss_pred cccHHHHHHHHHHHHHhh-HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHH
Q 031806 33 SQDPSQAVAAAIFQINTA-VSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIA 111 (152)
Q Consensus 33 f~~l~~~Is~~if~In~~-vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~ 111 (152)
...+++.|+..|-.|..+ |--+.+ +..+-.+.+++.++.|.++..|...-......++-
T Consensus 130 ~~elw~~I~~~I~sIk~dYld~Ya~--------------------vv~kYTdyyq~fneilskms~~I~aG~DGn~VkfD 189 (337)
T PF06511_consen 130 YAELWAKIADLIKSIKDDYLDVYAD--------------------VVKKYTDYYQDFNEILSKMSDWIKAGKDGNNVKFD 189 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHH--------------------HHHHHHHHHHHHHHHHHHHGGGEEECSSCTEEEEE
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHhhhhcCCCCCeeeec
Confidence 355777888888777665 544444 44556788899999999999998632233457776
Q ss_pred HHHHHHHHHHHHHHHH
Q 031806 112 DAKLAKDFQSVLKEFQ 127 (152)
Q Consensus 112 ~~KL~~df~~~l~~Fq 127 (152)
..+|.+.+...++.|-
T Consensus 190 ~~~lk~al~~l~~kY~ 205 (337)
T PF06511_consen 190 AGALKNALEELKDKYS 205 (337)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7777777777776665
No 54
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=34.92 E-value=1.6e+02 Score=20.50 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=31.9
Q ss_pred HHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031806 42 AAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQAS 96 (152)
Q Consensus 42 ~~if~In~~vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~ 96 (152)
..+-..-.-++.++.-+..|=|..|-.+|+-.|.++.-.+ +.++..|+.++
T Consensus 42 ~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~----~~l~~~l~~v~ 92 (106)
T PF10805_consen 42 ERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGEL----KELSARLQGVS 92 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHH----HHHHHHHHHHH
Confidence 3344456668888888888888777666666655555444 44444444443
No 55
>PHA03173 UL37 tegument protein; Provisional
Probab=34.74 E-value=4.6e+02 Score=25.86 Aligned_cols=90 Identities=16% Similarity=0.234 Sum_probs=52.6
Q ss_pred ccHHHHHHHHHHHHHhhHHHHHHHHHh-----------------------cCCCCCcH-------------HHHHHHHHH
Q 031806 34 QDPSQAVAAAIFQINTAVSSFYRLVNS-----------------------LGTPKDTL-------------DLRDKLHKT 77 (152)
Q Consensus 34 ~~l~~~Is~~if~In~~vs~l~kl~~~-----------------------LGT~~Dt~-------------~lR~kl~~~ 77 (152)
..|.+.|+..+..+-..+.+|++|... ||+.++.. ++|..|.-.
T Consensus 728 ~~l~~~i~~a~~~l~~~~~~l~~fF~Crf~s~~~~~~V~iy~~~~~~~~~lG~Wr~~dv~dAv~~~~~~~~~~ra~iR~~ 807 (1028)
T PHA03173 728 DALVDSIADAIVLLASHMLTLKAFFACRFESVGGGQTVTIYARGGERAPRFGTWRLADVVDAVGGYYGEYNDARADLRAD 807 (1028)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhceeeccCCCceEEEecCCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888888899999999999988754 66666632 233333333
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 031806 78 RLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQSVLKEFQKAQR 131 (152)
Q Consensus 78 ~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~~~KL~~df~~~l~~Fq~~Qr 131 (152)
....+.++.+|++.|..=..+.-..+ -+++.+-|+.++.+|-.+-+
T Consensus 808 ~~aLR~~~~~Tt~aL~~Ce~L~aq~~--------~~~~~~~f~~l~~~~~~l~~ 853 (1028)
T PHA03173 808 LAALRTVIAETTAALQECEALAAQTS--------GDSAGNLFSTLLADHAGLTR 853 (1028)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC--------CchHHHHHHHHHHHHHHHHH
Confidence 34444555555555554444322111 24455667766666655443
No 56
>PRK10807 paraquat-inducible protein B; Provisional
Probab=34.41 E-value=3.5e+02 Score=24.42 Aligned_cols=21 Identities=19% Similarity=0.137 Sum_probs=16.3
Q ss_pred CCccccHHHHHHHHHHHHHhh
Q 031806 30 QSQSQDPSQAVAAAIFQINTA 50 (152)
Q Consensus 30 ~~ef~~l~~~Is~~if~In~~ 50 (152)
+..|+.|.+.+..-+-+||.-
T Consensus 412 ps~l~~l~~~~~~il~kin~l 432 (547)
T PRK10807 412 SGGLAQIQQKLMEALDKINNL 432 (547)
T ss_pred CCCHHHHHHHHHHHHHHHhcC
Confidence 577888888888878777766
No 57
>PLN03217 transcription factor ATBS1; Provisional
Probab=34.37 E-value=1.5e+02 Score=20.29 Aligned_cols=55 Identities=22% Similarity=0.226 Sum_probs=37.3
Q ss_pred HHHhhHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 031806 46 QINTAVSSFYRLVNSLGTPK--DTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADH 100 (152)
Q Consensus 46 ~In~~vs~l~kl~~~LGT~~--Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~ 100 (152)
+||..|+.|+.++-.++..+ |...--.=|.++..+|+.|-+++.+.-.+|..+..
T Consensus 21 qi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL~ 77 (93)
T PLN03217 21 QINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLA 77 (93)
T ss_pred HHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777788888776664422 22223344578888999999888887777777654
No 58
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=34.21 E-value=74 Score=21.23 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHH
Q 031806 36 PSQAVAAAIFQINTAVSSFYRLVN 59 (152)
Q Consensus 36 l~~~Is~~if~In~~vs~l~kl~~ 59 (152)
=.++++++++.+|..|.+|+..++
T Consensus 26 K~dqlss~vq~LnAkv~qLe~dv~ 49 (78)
T COG4238 26 KIDQLSSDVQTLNAKVDQLENDVN 49 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888899988888888776
No 59
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=33.61 E-value=3.8e+02 Score=24.59 Aligned_cols=54 Identities=11% Similarity=0.063 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHHHHHH
Q 031806 69 DLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQSV 122 (152)
Q Consensus 69 ~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~~~KL~~df~~~ 122 (152)
++..+|.....++|.+.+++.+.=+++......-.......=+|++|.+++...
T Consensus 168 ~~~~~i~~~V~~iN~ll~qIa~LN~qI~~~~~~g~~~ndLlDqRD~ll~eLS~~ 221 (627)
T PRK06665 168 MANDEIEITVEEINNILRNIADLNEQIVKSQAMGDNPNDLLDRRDLLVDKLSSL 221 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHhh
Confidence 355666666667777776665555555443221011223444566677776654
No 60
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=33.56 E-value=1.7e+02 Score=20.56 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031806 70 LRDKLHKTRLHIGQLVKDTSSKLKQAS 96 (152)
Q Consensus 70 lR~kl~~~~~~t~~l~k~t~~~lk~L~ 96 (152)
|=++|..+.+.+..|..++...=+.+.
T Consensus 6 l~~~l~~le~~l~~l~~~~~~LK~~~~ 32 (107)
T PF06156_consen 6 LFDRLDQLEQQLGQLLEELEELKKQLQ 32 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333333333
No 61
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=33.42 E-value=1.2e+02 Score=22.51 Aligned_cols=11 Identities=0% Similarity=0.114 Sum_probs=5.9
Q ss_pred CCccccHHHHH
Q 031806 30 QSQSQDPSQAV 40 (152)
Q Consensus 30 ~~ef~~l~~~I 40 (152)
|++|..+...+
T Consensus 25 D~~f~~~~~~~ 35 (229)
T PF03114_consen 25 DEEFEELEEKF 35 (229)
T ss_dssp HHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 45666664443
No 62
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=33.27 E-value=1.4e+02 Score=23.84 Aligned_cols=56 Identities=13% Similarity=0.219 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031806 37 SQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQ 94 (152)
Q Consensus 37 ~~~Is~~if~In~~vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~ 94 (152)
.......|..||..+..|+..+++.-.-++ ..++.+..+.+....|--+|++..+.
T Consensus 48 r~~h~eeLrqI~~DIn~lE~iIkqa~~er~--~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 48 RMAHVEELRQINQDINTLENIIKQAESERN--KRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566788899999999999987655443 57777777777788888888877777
No 63
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=32.89 E-value=4.7e+02 Score=25.44 Aligned_cols=99 Identities=17% Similarity=0.235 Sum_probs=64.5
Q ss_pred CccccHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHH------HHHHHHHHHhhhhccCCCC
Q 031806 31 SQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLV------KDTSSKLKQASEADHHTEV 104 (152)
Q Consensus 31 ~ef~~l~~~Is~~if~In~~vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~------k~t~~~lk~L~~~~~~~~~ 104 (152)
++|..--+..-.++..--..++.|.+++-++|--.| ..|-++++++.+.....- ..-+..|.+|.-+.+.-..
T Consensus 853 ~~~~~~~QQ~R~Q~d~aKe~~~~LnkLiPql~ll~d-E~L~dRveE~~E~L~~a~e~~~fI~qhG~tls~LEpia~~Lqs 931 (1480)
T COG3096 853 SNHENDNQQQRIQFDQAKEGVTALNRLIPQLNLLAD-ESLADRVEEIRERLDEAQEAARFIQQHGNTLSKLEPIASVLQS 931 (1480)
T ss_pred HhhhchHHHHHHHHHHHHHHHHHHHHhhhhhccccc-hhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHhhhhHHHHHhC
Confidence 445555666666777777779999999999998776 678888888877665432 2333334444333221122
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031806 105 SPIRKIADAKLAKDFQSVLKEFQKAQRLA 133 (152)
Q Consensus 105 ~~~~k~~~~KL~~df~~~l~~Fq~~Qr~~ 133 (152)
++ -+.+.|..++..+.+.-+.++.++
T Consensus 932 DP---e~~e~L~~~y~qA~~~q~q~~qq~ 957 (1480)
T COG3096 932 DP---EQFEQLKEDYAQAQQMQRQARQQA 957 (1480)
T ss_pred CH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 345788889988888877776653
No 64
>PRK10132 hypothetical protein; Provisional
Probab=32.49 E-value=1.8e+02 Score=20.50 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031806 68 LDLRDKLHKTRLHIGQLVKDTSSKLKQAS 96 (152)
Q Consensus 68 ~~lR~kl~~~~~~t~~l~k~t~~~lk~L~ 96 (152)
.+|..++..+...+..|+.++.+.++...
T Consensus 8 ~~~~~q~e~L~~Dl~~L~~~le~ll~~~~ 36 (108)
T PRK10132 8 NDVDDGVQDIQNDVNQLADSLESVLKSWG 36 (108)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555566666555555555554433
No 65
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=32.35 E-value=3.7e+02 Score=24.06 Aligned_cols=19 Identities=21% Similarity=0.153 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 031806 115 LAKDFQSVLKEFQKAQRLA 133 (152)
Q Consensus 115 L~~df~~~l~~Fq~~Qr~~ 133 (152)
|..+........+.+|++.
T Consensus 121 l~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 121 LKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 66
>PRK10132 hypothetical protein; Provisional
Probab=32.09 E-value=1.8e+02 Score=20.46 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHHHHHHHHHHH
Q 031806 38 QAVAAAIFQINTAVSSFYRLVNSLGTPK--DTLDLRDKLHKTRLHIGQLVKDTSS 90 (152)
Q Consensus 38 ~~Is~~if~In~~vs~l~kl~~~LGT~~--Dt~~lR~kl~~~~~~t~~l~k~t~~ 90 (152)
..+..-...|..-+..++.+++..|... ....+|+++......+++.+.+...
T Consensus 12 ~q~e~L~~Dl~~L~~~le~ll~~~~~~~~~~~~~lR~r~~~~L~~ar~~l~~~~~ 66 (108)
T PRK10132 12 DGVQDIQNDVNQLADSLESVLKSWGSDAKGEAEAARRKAQALLKETRARMHGRTR 66 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3444556667777888888888776433 3456888888877777766654444
No 67
>PF08649 DASH_Dad1: DASH complex subunit Dad1; InterPro: IPR013958 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules []. Throughout the cell cycle Dad1 remains bound to kinetochores and its association is dependent on the Mis6 and Mal2 [].
Probab=32.06 E-value=71 Score=20.18 Aligned_cols=27 Identities=7% Similarity=0.164 Sum_probs=21.9
Q ss_pred cccHHHHHHHHHHHHHhhHHHHHHHHH
Q 031806 33 SQDPSQAVAAAIFQINTAVSSFYRLVN 59 (152)
Q Consensus 33 f~~l~~~Is~~if~In~~vs~l~kl~~ 59 (152)
.+.|.+.|+.++-.|-+|+..|.+-+.
T Consensus 7 R~~Li~eI~~~~e~vl~nlN~LNRsLE 33 (58)
T PF08649_consen 7 RDRLIQEISESMESVLNNLNALNRSLE 33 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 467899999999999998888887443
No 68
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=31.65 E-value=1.4e+02 Score=19.04 Aligned_cols=38 Identities=24% Similarity=0.259 Sum_probs=27.8
Q ss_pred HHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031806 57 LVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQ 94 (152)
Q Consensus 57 l~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~ 94 (152)
.+..|=+|+...++|++|........+.+++....+++
T Consensus 14 ~~glL~aP~sG~e~R~~l~~~~~~~~~~~~~~~~~~~~ 51 (74)
T PF12732_consen 14 AAGLLFAPKSGKETREKLKDKAEDLKDKAKDLYEEAKE 51 (74)
T ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556688999999999988777777766666665544
No 69
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=31.12 E-value=3.7e+02 Score=23.67 Aligned_cols=54 Identities=9% Similarity=0.052 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHHHHHH
Q 031806 69 DLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQSV 122 (152)
Q Consensus 69 ~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~~~KL~~df~~~ 122 (152)
++...|......+|.+++.+.+.=+++......-.......=+|++|.+++...
T Consensus 151 ~~~~~i~~~V~~iN~l~~~Ia~LN~~I~~~~~~g~~~ndL~DqRD~ll~~LS~~ 204 (483)
T PRK07521 151 DADAEIADSVDTLNDLLAQFEDANNAVVSGTATGRDASDALDQRDKLLKQISQI 204 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHHhh
Confidence 355666667777777777666555555443221011223444566677776654
No 70
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=31.10 E-value=2.8e+02 Score=22.22 Aligned_cols=48 Identities=8% Similarity=0.120 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031806 86 KDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETT 139 (152)
Q Consensus 86 k~t~~~lk~L~~~~~~~~~~~~~k~~~~KL~~df~~~l~~Fq~~Qr~~~ekek~ 139 (152)
+.|+.++..|..+.. +.+-.+.|..........+|..+-..+.+.-++
T Consensus 56 rqI~~DIn~lE~iIk------qa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 56 RQINQDINTLENIIK------QAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666542 334445556666666666666666666665444
No 71
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=30.89 E-value=2.4e+02 Score=21.45 Aligned_cols=42 Identities=17% Similarity=0.290 Sum_probs=31.8
Q ss_pred HHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 031806 57 LVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEAD 99 (152)
Q Consensus 57 l~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~ 99 (152)
++..+ ...|...+...|..++..+...-..+...+.+|..+.
T Consensus 96 L~~~i-d~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~ 137 (184)
T PF05791_consen 96 LVEAI-DQKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFK 137 (184)
T ss_dssp HHHHH-HHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 5677778888888888888888888888888888874
No 72
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=30.73 E-value=3.8e+02 Score=23.75 Aligned_cols=54 Identities=17% Similarity=0.153 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHHHHHH
Q 031806 69 DLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQSV 122 (152)
Q Consensus 69 ~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~~~KL~~df~~~ 122 (152)
++...|.....++|.+.+++.+.=+++......-.......=+|+.|.+++...
T Consensus 168 ~~~~~i~~~V~~iN~ll~~Ia~LN~~I~~~~~~g~~~ndLlDqRD~ll~~LS~~ 221 (507)
T PRK07739 168 DLKSEIDVTVKEINSLASQISDLNKQIAKVEPNGYLPNDLYDQRDLLLDELSKI 221 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhh
Confidence 355666666667777776665554554443211011122344456677766554
No 73
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=29.92 E-value=1.7e+02 Score=23.60 Aligned_cols=60 Identities=17% Similarity=0.201 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031806 76 KTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAER 136 (152)
Q Consensus 76 ~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~~~KL~~df~~~l~~Fq~~Qr~~~ek 136 (152)
.++..|-.++|.+++.|.....+-.. -.+..---|++||-.|++--|+..|+.-.++...
T Consensus 5 KLQ~Eid~~lKkv~EG~~~F~~i~~K-~~~~~n~~QKEK~E~DLKkEIKKLQR~RdQIK~W 64 (233)
T PF04065_consen 5 KLQQEIDRTLKKVQEGVEEFDEIYEK-VESATNQNQKEKLEADLKKEIKKLQRLRDQIKTW 64 (233)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-HHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777776664321 0011122467889889888888888776655443
No 74
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=29.81 E-value=1.2e+02 Score=17.66 Aligned_cols=19 Identities=21% Similarity=0.183 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 031806 70 LRDKLHKTRLHIGQLVKDT 88 (152)
Q Consensus 70 lR~kl~~~~~~t~~l~k~t 88 (152)
+-++|......+...++..
T Consensus 35 ~ld~i~~~~~~~~~~~~~~ 53 (60)
T cd00193 35 LLDRIEDNVDNADVNVKRA 53 (60)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444433333
No 75
>PF12889 DUF3829: Protein of unknown function (DUF3829); InterPro: IPR024291 This is a small family of proteins from several bacterial species, whose function is not known. It may, however, be related to the GvpL_GvpF family of proteins (PF06386 from PFAM).; PDB: 3RH3_B 3IEE_A.
Probab=29.29 E-value=2e+02 Score=22.58 Aligned_cols=80 Identities=10% Similarity=0.147 Sum_probs=34.1
Q ss_pred HHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC--CCCchhHHHHHHHHHHHHHH
Q 031806 44 IFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHH--TEVSPIRKIADAKLAKDFQS 121 (152)
Q Consensus 44 if~In~~vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~--~~~~~~~k~~~~KL~~df~~ 121 (152)
|..++..+..++++...-++..+.......+......++.+++.+.........+... ..++ .++|...|..
T Consensus 194 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vr~~~~~~~~~~~~~~~~~~------~~~l~~~yn~ 267 (276)
T PF12889_consen 194 LAELEKLLKDLKKLTKENYDDEMLSSFMSSADSFKSSAKSFIRRVRDLQQSESNWMSGEPTEGS------PEKLLKSYND 267 (276)
T ss_dssp HHHHHHHHHHHHTS---TT-H----HHHHHHHHHHHHHHHHHHHHHH-------------HCTT------SS--HHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCCCC------HHHHHHHHHH
Confidence 3444444444444333333333344566667777777777776665511111111110 0111 2568888888
Q ss_pred HHHHHHHH
Q 031806 122 VLKEFQKA 129 (152)
Q Consensus 122 ~l~~Fq~~ 129 (152)
.+..|.++
T Consensus 268 lI~~yN~~ 275 (276)
T PF12889_consen 268 LISDYNRL 275 (276)
T ss_dssp HHHHHHH-
T ss_pred HHHHhccC
Confidence 88888765
No 76
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=29.22 E-value=2.4e+02 Score=21.01 Aligned_cols=106 Identities=12% Similarity=0.126 Sum_probs=56.9
Q ss_pred CccccHHHHHHHHHHHHHhhHHHHHHHHHhcCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHH
Q 031806 31 SQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGT-PKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRK 109 (152)
Q Consensus 31 ~ef~~l~~~Is~~if~In~~vs~l~kl~~~LGT-~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k 109 (152)
-||..|.-....-.-+|----..|.++-..+|+ -.--..+|++++.+......+-.++...-..+..+... -...+
T Consensus 42 iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~---l~~~k 118 (177)
T PF13870_consen 42 IDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREE---LYRVK 118 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 356666555544444554444444444444432 22223577777777777777666666555555544210 00011
Q ss_pred HH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031806 110 IA-------------------DAKLAKDFQSVLKEFQKAQRLAAERETT 139 (152)
Q Consensus 110 ~~-------------------~~KL~~df~~~l~~Fq~~Qr~~~ekek~ 139 (152)
.. ..-|..||..........++.+...++.
T Consensus 119 ~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk 167 (177)
T PF13870_consen 119 KERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERK 167 (177)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1226678888888877777777766553
No 77
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=29.22 E-value=98 Score=25.59 Aligned_cols=54 Identities=17% Similarity=0.260 Sum_probs=24.9
Q ss_pred CccccHHHHHHHHHHHHHhhHHH-HHHHHHhcC--CCCCcHHHHHHHHHHHHHHHHH
Q 031806 31 SQSQDPSQAVAAAIFQINTAVSS-FYRLVNSLG--TPKDTLDLRDKLHKTRLHIGQL 84 (152)
Q Consensus 31 ~ef~~l~~~Is~~if~In~~vs~-l~kl~~~LG--T~~Dt~~lR~kl~~~~~~t~~l 84 (152)
++|......+.+..-..-..+.. ++..+..|| |..|-.+|-++||++...++.|
T Consensus 235 ~ef~~~~g~~~~a~m~~r~~~~~~~e~~L~~l~lPTr~evd~l~k~l~eLrre~r~L 291 (293)
T PF09712_consen 235 EEFAQAYGQLVNALMDLRKQQQEVVEEYLRSLNLPTRSEVDELYKRLHELRREVRAL 291 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444444333333 344445555 4444445555555555544433
No 78
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=29.15 E-value=1.9e+02 Score=25.31 Aligned_cols=27 Identities=11% Similarity=0.118 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031806 70 LRDKLHKTRLHIGQLVKDTSSKLKQAS 96 (152)
Q Consensus 70 lR~kl~~~~~~t~~l~k~t~~~lk~L~ 96 (152)
+...|......+|.+.+++...=+++.
T Consensus 157 ~~~~i~~~V~~iN~ll~~Ia~LN~~I~ 183 (456)
T PRK07191 157 IGQQRDATVKQINSLTRSIADYNQKIL 183 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555544433333
No 79
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=29.05 E-value=3.3e+02 Score=22.68 Aligned_cols=72 Identities=15% Similarity=0.133 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 031806 69 DLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPI-RKIADAKLAKDFQSVLKEFQKAQRLAAERETTY 140 (152)
Q Consensus 69 ~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~-~k~~~~KL~~df~~~l~~Fq~~Qr~~~ekek~~ 140 (152)
..-+.+..+...|++|++.+++.|++-..-.......+. ..=..++.-.+.-+++.+-..++....++.++.
T Consensus 242 ~a~~~~~av~~tTnell~~nAe~lk~~~~~iak~~~~~~vdiEtL~~~~~~li~ti~e~~~i~~e~~~~r~~~ 314 (333)
T PF05816_consen 242 KALDAQQAVNDTTNELLRRNAEMLKQNSVEIAKEAERPVVDIETLKKAFQNLIETIEETDQIQEEGREKRAQA 314 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455777788888888888888775442211000111 111234455666667777777777777765544
No 80
>PF05713 MobC: Bacterial mobilisation protein (MobC); InterPro: IPR008687 This family consists of several bacterial MobC-like, mobilisation proteins. MobC proteins belong to the group of relaxases. Together with MobA and MobB they bind to a single cis-active site of a mobilising plasmid, the origin of transfer (oriT) region []. The absence of MobC has several different effects on oriT DNA. Site- and strand-specific nicking by MobA protein is severely reduced, accounting for the lower frequency of mobilisation. The localised DNA strand separation required for this nicking is less affected, but becomes more sensitive to the level of active DNA gyrase in the cell. In addition, strand separation is not efficiently extended through the region containing the nick site. These effects suggest a model in which MobC acts as a molecular wedge for the relaxosome-induced melting of oriT DNA. The effect of MobC on strand separation may be partially complemented by the helical distortion induced by supercoiling. However, MobC extends the melted region through the nick site, thus providing the single-stranded substrate required for cleavage by MobA [].
Probab=28.57 E-value=1.3e+02 Score=17.60 Aligned_cols=34 Identities=15% Similarity=0.234 Sum_probs=20.2
Q ss_pred HHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 031806 43 AIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTR 78 (152)
Q Consensus 43 ~if~In~~vs~l~kl~~~LGT~~Dt~~lR~kl~~~~ 78 (152)
.|-.|.+|+.+|-|.++. +..+..+..+-++.+.
T Consensus 4 eL~~ignNlNQiAk~~N~--~~~~~~~~~~~~~~L~ 37 (48)
T PF05713_consen 4 ELNRIGNNLNQIAKHANS--GQVDEQEYEKLIEELR 37 (48)
T ss_pred HHHHHhccHHHHHHHHhC--CCCcHHHHHHHHHHHH
Confidence 466777888888888877 3344444443344443
No 81
>PF06015 Chordopox_A30L: Chordopoxvirus A30L protein; InterPro: IPR009257 This family consists of several short Chordopoxvirus proteins which are homologous to the A30L protein of Vaccinia virus. The vaccinia virus A30L protein is required for the association of electron-dense, granular, proteinaceous material with the concave surfaces of crescent membranes, an early step in viral morphogenesis. A30L is known to interact with the G7L protein and it has been shown that the stability of each is dependent on its association with the other [].
Probab=28.33 E-value=71 Score=21.00 Aligned_cols=30 Identities=20% Similarity=0.187 Sum_probs=25.9
Q ss_pred CCccccHHHHHHHHHHHHHhhHHHHHHHHH
Q 031806 30 QSQSQDPSQAVAAAIFQINTAVSSFYRLVN 59 (152)
Q Consensus 30 ~~ef~~l~~~Is~~if~In~~vs~l~kl~~ 59 (152)
++||......|..-|-.||..|=.|.|--+
T Consensus 22 d~e~~atls~i~eli~~IN~kIl~lNKKsK 51 (71)
T PF06015_consen 22 DSEFAATLSAIKELISQINLKILALNKKSK 51 (71)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Confidence 578999999999999999999988887544
No 82
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=27.91 E-value=1.3e+02 Score=26.08 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 031806 70 LRDKLHKTRLHIGQLVKDTSSKLKQASEA 98 (152)
Q Consensus 70 lR~kl~~~~~~t~~l~k~t~~~lk~L~~~ 98 (152)
+|+||-++..++..|. .++.+|.=+
T Consensus 70 IR~KlleL~~~lQ~lS----~df~~LqPL 94 (379)
T PF11593_consen 70 IRSKLLELYNKLQELS----SDFQKLQPL 94 (379)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHhchH
Confidence 8888888888876555 444454443
No 83
>COG5661 Predicted secreted Zn-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=27.55 E-value=3.1e+02 Score=21.64 Aligned_cols=58 Identities=12% Similarity=0.015 Sum_probs=45.6
Q ss_pred CCccccHHHHHHHHHHHH-------H-hhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHH
Q 031806 30 QSQSQDPSQAVAAAIFQI-------N-TAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKD 87 (152)
Q Consensus 30 ~~ef~~l~~~Is~~if~I-------n-~~vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~ 87 (152)
+||..-+.+.+...|++= - ..-+.|++.+..|+...||..|+.++.++.+.+=+....
T Consensus 111 ~pElalvwdtlladikrHEErH~eiar~har~mEkaL~sl~p~~~C~slqak~~~vt~~v~~~hd~ 176 (210)
T COG5661 111 DPELALVWDTLLADIKRHEERHAEIARYHAREMEKALLSLRPRPDCESLQAKAAEVTQQVMERHDR 176 (210)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 588888888888888752 2 226789999999999999999999998887766555543
No 84
>PHA03332 membrane glycoprotein; Provisional
Probab=27.49 E-value=6.4e+02 Score=25.28 Aligned_cols=62 Identities=10% Similarity=0.157 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhcCCCCCc--H-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 031806 37 SQAVAAAIFQINTAVSSFYRLVNSLGTPKDT--L-------DLRDKLHKTRLHIGQLVKDTSSKLKQASEA 98 (152)
Q Consensus 37 ~~~Is~~if~In~~vs~l~kl~~~LGT~~Dt--~-------~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~ 98 (152)
+.++.+.|...|..|..+..-+.++|-.-+. . ++..||.++.+++|.-+-.++..++.|.+-
T Consensus 893 ia~mksaIg~tNaAV~~lsDai~klGnti~kisatl~~nI~avNgRIs~Led~VN~r~~~v~~~intLA~q 963 (1328)
T PHA03332 893 TAEMASKIGGLNARVDKTSDVITKLGDTIAKISATLDNNIRAVNGRVSDLEDQVNLRFLAVATNFNTLATQ 963 (1328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346777777777777777777777755442 1 334455666666666666666666666553
No 85
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=27.47 E-value=1.6e+02 Score=18.37 Aligned_cols=38 Identities=8% Similarity=0.282 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHH
Q 031806 39 AVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLV 85 (152)
Q Consensus 39 ~Is~~if~In~~vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~ 85 (152)
.|.+.|-+|-+.+.++++-.. ++|+.|..+.+.+.+|+
T Consensus 4 elEn~~~~~~~~i~tvk~en~---------~i~~~ve~i~envk~ll 41 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENE---------EISESVEKIEENVKDLL 41 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Confidence 455555566666666655443 45555555554444433
No 86
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=27.29 E-value=2.4e+02 Score=20.21 Aligned_cols=49 Identities=12% Similarity=0.227 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHHH
Q 031806 68 LDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDF 119 (152)
Q Consensus 68 ~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~~~KL~~df 119 (152)
-++=++|..+.+.++.+.++++..=+.|.++. .++....+.-+||..-.
T Consensus 4 keiFd~v~~le~~l~~l~~el~~lK~~l~~lv---EEN~~L~lENe~LR~RL 52 (114)
T COG4467 4 KEIFDQVDNLEEQLGVLLAELGGLKQHLGSLV---EENTALRLENEKLRERL 52 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHhhHHHHHHHh
Confidence 34556667777777777777766666666654 23444555555554433
No 87
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=26.94 E-value=1.3e+02 Score=21.82 Aligned_cols=33 Identities=12% Similarity=0.356 Sum_probs=22.2
Q ss_pred CccccHHHHHHHHHH--------HHHhhHHHHHHHHHhcCC
Q 031806 31 SQSQDPSQAVAAAIF--------QINTAVSSFYRLVNSLGT 63 (152)
Q Consensus 31 ~ef~~l~~~Is~~if--------~In~~vs~l~kl~~~LGT 63 (152)
++|..+...+...|. .||.+|.++..++..++.
T Consensus 43 ~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~ 83 (142)
T PF04048_consen 43 QEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISE 83 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777666666554 567777777777776664
No 88
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=26.76 E-value=2e+02 Score=19.31 Aligned_cols=98 Identities=13% Similarity=0.144 Sum_probs=49.2
Q ss_pred HHHHHHHhhHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhH-HH-----HHHH
Q 031806 42 AAIFQINTAVSSFYRLVNSLGTPKDTLD-LRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIR-KI-----ADAK 114 (152)
Q Consensus 42 ~~if~In~~vs~l~kl~~~LGT~~Dt~~-lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~-k~-----~~~K 114 (152)
..+..|..+|..|+..+..|+.-...-- ..+....+....+.++.+|+...+.+...... .+..- .. ...|
T Consensus 8 ~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~--l~~~~~~~~~~~~~~~r 85 (117)
T smart00503 8 EKVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKE--LEKENLENRASGSASDR 85 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHhhcccCCHhhh
Confidence 3566777777777776766654221100 00011334556666677777666666664431 11100 00 1123
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHhccc
Q 031806 115 L-AKDFQSVLKEFQKAQRLAAERETTYA 141 (152)
Q Consensus 115 L-~~df~~~l~~Fq~~Qr~~~ekek~~~ 141 (152)
. ..-....-..|+.+-..|..-++.+.
T Consensus 86 ~~~~q~~~L~~~f~~~m~~fq~~Q~~~~ 113 (117)
T smart00503 86 TRKAQTEKLRKKFKEVMNEFQRLQRKYR 113 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 23344455667777777776666554
No 89
>PF11944 DUF3461: Protein of unknown function (DUF3461); InterPro: IPR020911 This entry describes proteins of unknown function.
Probab=26.72 E-value=2.1e+02 Score=20.84 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=16.3
Q ss_pred HHHHHhhHH-HHHHHHHhcCCCCCcHHHHHHH
Q 031806 44 IFQINTAVS-SFYRLVNSLGTPKDTLDLRDKL 74 (152)
Q Consensus 44 if~In~~vs-~l~kl~~~LGT~~Dt~~lR~kl 74 (152)
+..||.++. .|+-|-+.+|......++..+|
T Consensus 69 v~Eis~~L~~vieELdqi~~~~~~~~d~K~ki 100 (125)
T PF11944_consen 69 VSEISPNLRYVIEELDQITGREQAEVDLKQKI 100 (125)
T ss_pred hhhccHHHHHHHHHHHHHHcchhhhHHHHHHH
Confidence 344555532 2444444455666666677765
No 90
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=26.59 E-value=1.8e+02 Score=26.56 Aligned_cols=58 Identities=17% Similarity=0.178 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031806 76 KTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAA 134 (152)
Q Consensus 76 ~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~~~KL~~df~~~l~~Fq~~Qr~~~ 134 (152)
.++..|-..+|.+.+.|.-...+-..- .+..---|++||-.|++.-++..|++-.++.
T Consensus 5 KLq~eIdr~lkKv~Egve~Fd~i~ek~-~~~~n~sqkeK~e~DLKkEIKKLQRlRdQIK 62 (575)
T KOG2150|consen 5 KLQQEIDRCLKKVDEGVEIFDEIYEKL-HSANNVSQKEKLESDLKKEIKKLQRLRDQIK 62 (575)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHH-HhcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666555554432110 0000224567888888777777777665543
No 91
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=26.04 E-value=2.3e+02 Score=24.92 Aligned_cols=50 Identities=24% Similarity=0.311 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhc----CCCCCcHHHHHHHHHHHHHHHHHH
Q 031806 36 PSQAVAAAIFQINTAVSSFYRLVNSL----GTPKDTLDLRDKLHKTRLHIGQLV 85 (152)
Q Consensus 36 l~~~Is~~if~In~~vs~l~kl~~~L----GT~~Dt~~lR~kl~~~~~~t~~l~ 85 (152)
+-+.|...|-+||+.+.+|..+-.+| +...+..+|+++=..+..+..+++
T Consensus 152 ~~~~i~~~V~~iN~l~~~Ia~LN~~I~~~~~~g~~~ndL~DqRD~ll~~LS~~v 205 (483)
T PRK07521 152 ADAEIADSVDTLNDLLAQFEDANNAVVSGTATGRDASDALDQRDKLLKQISQIV 205 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHHhhc
Confidence 34566667777887766666655554 223345567777666666666655
No 92
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=25.61 E-value=4.8e+02 Score=23.51 Aligned_cols=37 Identities=16% Similarity=0.059 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 031806 106 PIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAP 142 (152)
Q Consensus 106 ~~~k~~~~KL~~df~~~l~~Fq~~Qr~~~ekek~~~~ 142 (152)
+.-.-..+.|.++....-++|..+|..+..+++..+.
T Consensus 474 kat~SALdlLkrEKe~~EqefLslqeEfQk~ekenl~ 510 (527)
T PF15066_consen 474 KATTSALDLLKREKETREQEFLSLQEEFQKHEKENLE 510 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4444567889999999999999999888887776543
No 93
>COG5200 LUC7 U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
Probab=25.51 E-value=3.6e+02 Score=21.74 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=40.7
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031806 64 PKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERE 137 (152)
Q Consensus 64 ~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~~~KL~~df~~~l~~Fq~~Qr~~~eke 137 (152)
.+-+++.+.+|.++.+.++.+--.+.....+..++.. .|| ...++..|-.+++...+++
T Consensus 106 ~~~t~ee~~kI~e~~e~~~~~d~sIg~lg~e~dalak------------rk~---V~~a~~~f~el~rl~~~rk 164 (258)
T COG5200 106 DRTTPEEFGKIKEKEELFNRVDESIGELGMEGDALAK------------RKL---VERACSAFNELERLREERK 164 (258)
T ss_pred ccCCHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHH------------HHH---HHHHHHHHHHHHHHHHHHH
Confidence 3557899999999999998888877777766665542 333 3446666666666655554
No 94
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=25.46 E-value=5.6e+02 Score=23.89 Aligned_cols=55 Identities=13% Similarity=0.134 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHHHHHHH
Q 031806 69 DLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQSVL 123 (152)
Q Consensus 69 ~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~~~KL~~df~~~l 123 (152)
++..+|......+|.+.+.+.+.=+++......-.......=+|++|.+++...+
T Consensus 156 ~vn~qI~~~V~~IN~l~~qIA~LN~qI~~~~~~G~~~NdLlDqRD~Ll~eLS~~v 210 (676)
T PRK05683 156 NINSQLSAMTDQVNNLTTSIASYNKQIAQASASGATPNDLLDARDEAVRQLNELV 210 (676)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHhHHHHHHHHHHHHhhc
Confidence 4566666667777777766655544444332110112234445667887776543
No 95
>PHA02892 hypothetical protein; Provisional
Probab=25.39 E-value=90 Score=20.57 Aligned_cols=30 Identities=10% Similarity=0.069 Sum_probs=25.9
Q ss_pred CCccccHHHHHHHHHHHHHhhHHHHHHHHH
Q 031806 30 QSQSQDPSQAVAAAIFQINTAVSSFYRLVN 59 (152)
Q Consensus 30 ~~ef~~l~~~Is~~if~In~~vs~l~kl~~ 59 (152)
|+||......|..-|..||..|=.|.|--+
T Consensus 28 D~efsATls~vkElIs~IN~Kvl~INKKsK 57 (75)
T PHA02892 28 DPEFSASISLMQEIIKIINSKIIEIDKKYK 57 (75)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 689999999999999999999988887544
No 96
>PF08650 DASH_Dad4: DASH complex subunit Dad4; InterPro: IPR013959 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=25.27 E-value=2.1e+02 Score=18.87 Aligned_cols=30 Identities=7% Similarity=0.206 Sum_probs=19.5
Q ss_pred cHHHHHHHHHHHHHhhHHHHHHHHHhcCCC
Q 031806 35 DPSQAVAAAIFQINTAVSSFYRLVNSLGTP 64 (152)
Q Consensus 35 ~l~~~Is~~if~In~~vs~l~kl~~~LGT~ 64 (152)
.|.+.|-+++-++|..|..|.+-+..+-..
T Consensus 11 ~LLsRIi~NvekLNEsv~~lN~~l~eIn~~ 40 (72)
T PF08650_consen 11 NLLSRIIGNVEKLNESVAELNQELEEINRA 40 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 356667777777777777777766655433
No 97
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=25.09 E-value=2.9e+02 Score=20.46 Aligned_cols=30 Identities=7% Similarity=0.090 Sum_probs=15.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031806 67 TLDLRDKLHKTRLHIGQLVKDTSSKLKQAS 96 (152)
Q Consensus 67 t~~lR~kl~~~~~~t~~l~k~t~~~lk~L~ 96 (152)
.|+|+..|..-.+.|.+-+......++.+.
T Consensus 31 ~peLk~~l~~H~~eT~~qi~rLe~if~~lg 60 (147)
T cd07909 31 SEELKEAFESHLEETEGQVERLEQIFESLG 60 (147)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 355555555555555555544444444443
No 98
>PRK08471 flgK flagellar hook-associated protein FlgK; Validated
Probab=25.02 E-value=5.4e+02 Score=23.59 Aligned_cols=55 Identities=16% Similarity=0.129 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC--CchhHHHHHHHHHHHHHHHH
Q 031806 69 DLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTE--VSPIRKIADAKLAKDFQSVL 123 (152)
Q Consensus 69 ~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~--~~~~~k~~~~KL~~df~~~l 123 (152)
++..+|.....++|.+.+++.+.=+++........ ......=+|+.|.+++...+
T Consensus 161 ~~~~~i~~~V~~iN~ll~~Ia~LN~qI~~~~~~g~~~~~ndL~DqRD~ll~eLS~~v 217 (613)
T PRK08471 161 KVNEELKVTVDEINSLGKQIAEINKQIKEVEAGKTLKHANELRDKRDELELTLSKLV 217 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHhhc
Confidence 35667777777777777776666555554432100 11234445666877776544
No 99
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=24.88 E-value=4.5e+02 Score=22.63 Aligned_cols=100 Identities=11% Similarity=0.107 Sum_probs=0.0
Q ss_pred ccccHHHHHHHHHHHHHhh-HHHHHHHHHhcC-CCCCcHHHHHHHHHHHHHHHHHHHHH-------------------HH
Q 031806 32 QSQDPSQAVAAAIFQINTA-VSSFYRLVNSLG-TPKDTLDLRDKLHKTRLHIGQLVKDT-------------------SS 90 (152)
Q Consensus 32 ef~~l~~~Is~~if~In~~-vs~l~kl~~~LG-T~~Dt~~lR~kl~~~~~~t~~l~k~t-------------------~~ 90 (152)
++++|...+..-...+... +..+-.++++++ +-.+.+.|+.+|+.+.+..+-++.+. +.
T Consensus 228 sld~L~~~ltrL~~~~~~~~v~~l~~~~~~~a~~~~~~~~ll~~l~~l~~~l~~ll~~l~~~~lL~Nle~lt~~LA~as~ 307 (370)
T PLN03094 228 SLDELVGICTRLAREMEAIGVAKMYALAERAADLMEEARPLLLKIQAMAEDLQPLLSEVRDSGLLKEVEKLTRVAAEASE 307 (370)
T ss_pred CHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031806 91 KLKQASEADHHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAE 135 (152)
Q Consensus 91 ~lk~L~~~~~~~~~~~~~k~~~~KL~~df~~~l~~Fq~~Qr~~~e 135 (152)
.|.+++.-.. +.......+.-......++.+.+++-.....
T Consensus 308 ~l~~l~~~l~----~p~~~~~L~qtl~sl~~t~~ni~~vs~dv~~ 348 (370)
T PLN03094 308 DLRRLNSSIL----TPENTELLRQSIYTLTKTLKHIESISSDISG 348 (370)
T ss_pred HHHHHHHhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 100
>PRK14155 heat shock protein GrpE; Provisional
Probab=24.82 E-value=3.1e+02 Score=21.60 Aligned_cols=10 Identities=0% Similarity=0.192 Sum_probs=4.4
Q ss_pred CcHHHHHHHH
Q 031806 66 DTLDLRDKLH 75 (152)
Q Consensus 66 Dt~~lR~kl~ 75 (152)
|...+|.+..
T Consensus 42 efeN~RKR~~ 51 (208)
T PRK14155 42 EAENTKRRAE 51 (208)
T ss_pred HHHHHHHHHH
Confidence 3334454443
No 101
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=24.67 E-value=4.7e+02 Score=22.80 Aligned_cols=20 Identities=15% Similarity=0.167 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHhhhhc
Q 031806 80 HIGQLVKDTSSKLKQASEAD 99 (152)
Q Consensus 80 ~t~~l~k~t~~~lk~L~~~~ 99 (152)
.+...++++|..+++|..+.
T Consensus 160 ~i~~~V~~iN~ll~~Ia~LN 179 (456)
T PRK07191 160 QRDATVKQINSLTRSIADYN 179 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666665554
No 102
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=24.14 E-value=5.5e+02 Score=23.35 Aligned_cols=53 Identities=11% Similarity=0.089 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHHHHHH
Q 031806 70 LRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQSV 122 (152)
Q Consensus 70 lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~~~KL~~df~~~ 122 (152)
+-..|.....++|.|++.+.+.=+++......-.......=+|++|++++...
T Consensus 161 i~~~I~~~V~~vNsLl~qIa~lN~qI~~~~~~g~~~NdLlDqRD~Lv~eLs~~ 213 (552)
T COG1256 161 INAEIAATVDEVNSLLKQIADLNKQIRKVKAAGNDPNDLLDQRDQLVDELSQL 213 (552)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHhh
Confidence 34455555666666665554443333333110011122444567788777654
No 103
>PRK10404 hypothetical protein; Provisional
Probab=24.13 E-value=2.5e+02 Score=19.46 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=25.5
Q ss_pred HHHHhhHHHHHHHHHhcCCC--CCcHHHHHHHHHHHHHHHHHHHHHHH
Q 031806 45 FQINTAVSSFYRLVNSLGTP--KDTLDLRDKLHKTRLHIGQLVKDTSS 90 (152)
Q Consensus 45 f~In~~vs~l~kl~~~LGT~--~Dt~~lR~kl~~~~~~t~~l~k~t~~ 90 (152)
-.|+..+..++.+++.-+.. ....+||+++......++..+.+..+
T Consensus 12 ~dl~~L~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~~ 59 (101)
T PRK10404 12 DDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASD 59 (101)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34455566666666665522 22345777776666666654444433
No 104
>PF00489 IL6: Interleukin-6/G-CSF/MGF family; InterPro: IPR003573 Interleukin-6 (IL6), also refered to as B-cell stimulatory factor-2 (BSF-2) and interferon beta-2, is a cytokine involved in a wide variety of biological functions []. It plays an essential role in the final differentiation of B-cells into IG-secreting cells, as well as inducing myeloma/plasmacytoma growth, nerve cell differentiation and, in hepatocytes, acute phase reactants [, ]. A number of other cytokines may be grouped with IL6 on the basis of sequence similarity [, , ]: these include granulocyte colony-stimulating factor (GCSF) and myelomonocytic growth factor (MGF). GCSF acts in hematopoiesis by affecting the production, differentiation and function of 2 related white cell groups in the blood []. MGF also acts in hematopoiesis, stimulating proliferation and colony formation of normal and transformed avian cells of the myeloid lineage. Cytokines of the IL6/GCSF/MGF family are glycoproteins of about 170 to 180 amino acid residues that contains four conserved cysteine residues involved in two disulphide bonds []. They have a compact, globular fold (similar to other interleukins), stabilised by the 2 disulphide bonds. One half of the structure is dominated by a 4 alpha-helix bundle with a left-handed twist []: the helices are anti-parallel, with 2 overhand connections, which fall into a 2-stranded anti-parallel beta-sheet. The fourth alpha-helix is important to the biological activity of the molecule []. It has been said [] that this family can be extended by the adjunction of LIF and OSM (see the relevant entry IPR001581 from INTERPRO) which seem to be structurally related.; GO: 0005125 cytokine activity, 0006955 immune response, 0005576 extracellular region; PDB: 1P9M_B 2IL6_A 1IL6_A 1ALU_A 3QWR_B 3DUH_C 3D85_C 3D87_C 1BGC_A 2L3Y_A ....
Probab=23.96 E-value=3.1e+02 Score=20.37 Aligned_cols=58 Identities=16% Similarity=0.279 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 031806 40 VAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEAD 99 (152)
Q Consensus 40 Is~~if~In~~vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~ 99 (152)
-...+.+|..-+..++.+++.|-..-.. +-+.+..++..+..|+..+...++.+....
T Consensus 52 ~e~CL~ri~~GL~~yq~lL~~l~~~~~~--~~~~v~~Lq~~~~~L~~~i~~~~~~~~~~~ 109 (154)
T PF00489_consen 52 KETCLSRIHSGLQEYQILLKYLQGEFPG--LKENVESLQLDTKDLAQTIKQKMKNPDEVT 109 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSSTT--THHHHHHHHHHHHHHHHHHHHHHHHHSTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCcc--chhHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 3667888888888899988888544332 237889999999999999999988865543
No 105
>COG3685 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.84 E-value=3.4e+02 Score=20.82 Aligned_cols=59 Identities=12% Similarity=0.142 Sum_probs=39.3
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 031806 65 KDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQSVLKEFQK 128 (152)
Q Consensus 65 ~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~~~KL~~df~~~l~~Fq~ 128 (152)
-+.++|+..+..-.+.|..-+...-+.+..+..... +...-..++|+.+=+.++-.|..
T Consensus 35 ~~~~~Lka~~E~Hl~ET~~qi~rLe~Vfe~~g~~~~-----~~~cda~~giiaegq~i~~~~~~ 93 (167)
T COG3685 35 AQYPELKAAIEKHLEETKGQIERLEQVFERLGKKAR-----RVTCDAMEGLIAEGQEIMEEFKS 93 (167)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc-----cchHHHHHHHHHHHHHHHHhccc
Confidence 346888888888888888888777777776555432 22344556666666666666644
No 106
>COG5182 CUS1 Splicing factor 3b, subunit 2 [RNA processing and modification]
Probab=23.78 E-value=1.6e+02 Score=25.35 Aligned_cols=25 Identities=44% Similarity=0.676 Sum_probs=21.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHH
Q 031806 104 VSPIRKIADAKLAKDFQSVLKEFQK 128 (152)
Q Consensus 104 ~~~~~k~~~~KL~~df~~~l~~Fq~ 128 (152)
..+.-++-..||-++|.++|+.||-
T Consensus 48 k~k~N~~~D~K~e~eF~Dvlq~~qv 72 (429)
T COG5182 48 KGKTNKVVDAKLEKEFKDVLQRFQV 72 (429)
T ss_pred CCCcchhhhhhhhhhHHHHHHHhcC
Confidence 4556788899999999999999984
No 107
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=23.70 E-value=2.7e+02 Score=25.90 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhc----CCCCCcHHHHHHHHHHHHHHHHHHH
Q 031806 37 SQAVAAAIFQINTAVSSFYRLVNSL----GTPKDTLDLRDKLHKTRLHIGQLVK 86 (152)
Q Consensus 37 ~~~Is~~if~In~~vs~l~kl~~~L----GT~~Dt~~lR~kl~~~~~~t~~l~k 86 (152)
-..|...|-+||+...+|-.|-.+| +...+.-+|+++=..+..+..+++.
T Consensus 158 n~qI~~~V~~IN~l~~qIA~LN~qI~~~~~~G~~~NdLlDqRD~Ll~eLS~~v~ 211 (676)
T PRK05683 158 NSQLSAMTDQVNNLTTSIASYNKQIAQASASGATPNDLLDARDEAVRQLNELVG 211 (676)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHhHHHHHHHHHHHHhhcC
Confidence 4566677777777766665555554 2233445677777767666666653
No 108
>PHA03044 IMV membrane protein; Provisional
Probab=23.40 E-value=1.2e+02 Score=20.09 Aligned_cols=31 Identities=23% Similarity=0.176 Sum_probs=26.5
Q ss_pred CCccccHHHHHHHHHHHHHhhHHHHHHHHHh
Q 031806 30 QSQSQDPSQAVAAAIFQINTAVSSFYRLVNS 60 (152)
Q Consensus 30 ~~ef~~l~~~Is~~if~In~~vs~l~kl~~~ 60 (152)
|+||......|..-|-.||..|-.|.|--+.
T Consensus 24 d~efaAtls~ikElis~IN~kil~iNKKsKK 54 (74)
T PHA03044 24 DSEFSATLSTIKEIISQINLKVLSINKKSKK 54 (74)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6889999999999999999999988886553
No 109
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=23.23 E-value=2.5e+02 Score=19.00 Aligned_cols=58 Identities=5% Similarity=0.151 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 031806 38 QAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEAD 99 (152)
Q Consensus 38 ~~Is~~if~In~~vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~ 99 (152)
..+...|...+-.+..+++....+. .+.|+.-+......-...+.+....|..+..-+
T Consensus 4 ~~Ln~Ll~~~~d~~~~Y~~a~~~~~----~~~lk~~f~~~~~~~~~~~~~L~~~i~~~Gg~p 61 (111)
T PF09537_consen 4 EALNDLLKGLHDGIEGYEKAAEKAE----DPELKSLFQEFAQERQQHAEELQAEIQELGGEP 61 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------SHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 4445555555666777777777665 267787777777777777777777777777654
No 110
>PF14071 YlbD_coat: Putative coat protein
Probab=23.15 E-value=1.7e+02 Score=21.29 Aligned_cols=30 Identities=7% Similarity=0.175 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhcCCCCC
Q 031806 37 SQAVAAAIFQINTAVSSFYRLVNSLGTPKD 66 (152)
Q Consensus 37 ~~~Is~~if~In~~vs~l~kl~~~LGT~~D 66 (152)
.+.+...|..+++.|+.++.++.+...+.-
T Consensus 79 ~nq~q~hl~~~sqai~~vQ~~l~qFq~~~~ 108 (124)
T PF14071_consen 79 VNQMQKHLNNVSQAIGSVQQVLSQFQGNGQ 108 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 566778888888888888888888865543
No 111
>PF15308 CEP170_C: CEP170 C-terminus
Probab=22.93 E-value=76 Score=29.50 Aligned_cols=62 Identities=23% Similarity=0.316 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031806 69 DLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAA 134 (152)
Q Consensus 69 ~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~~~KL~~df~~~l~~Fq~~Qr~~~ 134 (152)
.+|+.+..+.+++.-|+++......+|..-++.+.+-...|. =-+|+...|++..+|||+..
T Consensus 607 ~Irente~la~KikiLFq~~~r~WeeiEaKi~aE~evpilKT----SNKEIsSILkeLrRVqkQLe 668 (689)
T PF15308_consen 607 AIRENTEKLAEKIKILFQDKERNWEEIEAKINAENEVPILKT----SNKEISSILKELRRVQKQLE 668 (689)
T ss_pred HHHHHHHHhhhhheeeecccccchHHHHHhhhccccCcccCC----ccHHHHHHHHHHHHHHHHHH
Confidence 456666666677777776666665555553332111110110 24589999999999999854
No 112
>PRK04654 sec-independent translocase; Provisional
Probab=22.66 E-value=4e+02 Score=21.26 Aligned_cols=61 Identities=7% Similarity=0.063 Sum_probs=34.3
Q ss_pred cccHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031806 33 SQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQAS 96 (152)
Q Consensus 33 f~~l~~~Is~~if~In~~vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~ 96 (152)
+..+.+.+..-|-++...+..+..-+. .--+..+||+.+.+....++++..++...+.++.
T Consensus 25 LPe~aRtlGk~irk~R~~~~~vk~El~---~El~~~ELrk~l~~~~~~i~~~~~~lk~~~~el~ 85 (214)
T PRK04654 25 LPKAARFAGLWVRRARMQWDSVKQELE---RELEAEELKRSLQDVQASLREAEDQLRNTQQQVE 85 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777665554444222 2222356777776666666655555555554444
No 113
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=22.47 E-value=2.8e+02 Score=24.74 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031806 70 LRDKLHKTRLHIGQLVKDTSSKLKQA 95 (152)
Q Consensus 70 lR~kl~~~~~~t~~l~k~t~~~lk~L 95 (152)
+...|......+|.+++.+...=+++
T Consensus 158 ~~~~i~~~V~~iN~l~~~Ia~LN~~I 183 (547)
T PRK08147 158 VNTAIGSSVDQINNYAKQIASLNDQI 183 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555554443333
No 114
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=22.35 E-value=1.9e+02 Score=21.43 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=38.4
Q ss_pred cccHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 031806 33 SQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDT 88 (152)
Q Consensus 33 f~~l~~~Is~~if~In~~vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t 88 (152)
...|.+.+...+..+.+.|..|+.....+|.+..... -+-+..+......++.++
T Consensus 31 ~peLk~~l~~H~~eT~~qi~rLe~if~~lg~~~~~~~-c~~m~gli~e~~~~~~~~ 85 (147)
T cd07909 31 SEELKEAFESHLEETEGQVERLEQIFESLGEKPEGKK-CKAMEGLIKEAEELIEET 85 (147)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCc-chHHHHHHHHHHHHHhcc
Confidence 4679999999999999999999999999997654311 122233444444444444
No 115
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=21.81 E-value=4e+02 Score=23.62 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=13.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031806 105 SPIRKIADAKLAKDFQSVLKEFQKAQRLAA 134 (152)
Q Consensus 105 ~~~~k~~~~KL~~df~~~l~~Fq~~Qr~~~ 134 (152)
....++..+|+. -|+..-.+|+.+++.+.
T Consensus 268 ~~K~~iL~ekv~-~~qti~~e~~~~lk~i~ 296 (446)
T KOG4438|consen 268 QEKAKILEEKVT-NLQTIEKELKALLKKIS 296 (446)
T ss_pred HHHHHHHHhHhH-HHHHHHHHHHHHHHHHH
Confidence 334455555532 34445555555555443
No 116
>PF10372 YojJ: Bacterial membrane-spanning protein N-terminus; InterPro: IPR019457 This entry is found at the N terminus of a family of putative membrane-spanning bacterial proteins. These proteins often contain IPR003390 from INTERPRO towards the C terminus. ; PDB: 2FB5_A.
Probab=21.80 E-value=2.4e+02 Score=18.40 Aligned_cols=20 Identities=30% Similarity=0.501 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 031806 115 LAKDFQSVLKEFQKAQRLAA 134 (152)
Q Consensus 115 L~~df~~~l~~Fq~~Qr~~~ 134 (152)
|..||...=..|..+|-.++
T Consensus 40 lL~e~e~i~~~f~~~q~~As 59 (70)
T PF10372_consen 40 LLCEFEEIREKFLDIQTLAS 59 (70)
T ss_dssp GGGGHHHHHHHHHHHHHHHH
T ss_pred echhHHHHHHHHHHHHHHHH
Confidence 66677777778888877665
No 117
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.78 E-value=2.8e+02 Score=25.73 Aligned_cols=35 Identities=29% Similarity=0.296 Sum_probs=14.2
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031806 63 TPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASE 97 (152)
Q Consensus 63 T~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~ 97 (152)
++.....||+|+.......+..=|++-..++.|..
T Consensus 7 ~~~~~~~lr~K~~kiL~~~~~~dkd~~~aL~~ls~ 41 (655)
T KOG3758|consen 7 SPEELTRLRNKLSKILNNRTYSDKDALAALRALST 41 (655)
T ss_pred CchhhHHHHHHHHHHHHhcccCcHHHHHHHHHHHH
Confidence 33333344444444444443333444444444443
No 118
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=21.77 E-value=4.3e+02 Score=21.29 Aligned_cols=85 Identities=18% Similarity=0.274 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHH
Q 031806 39 AVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKD 118 (152)
Q Consensus 39 ~Is~~if~In~~vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~~~KL~~d 118 (152)
.|...|-++|.....|.++=..|.-.+. ..|.-+.+...+++.+.|..+.+|.+---+.. -+..-..+..+
T Consensus 8 rVq~eLe~LN~atd~IN~lE~~L~~ar~--~fr~~l~e~~~kL~~~~kkLg~~I~karPYye-------a~~~a~~aq~e 78 (239)
T PF05276_consen 8 RVQEELEKLNQATDEINRLENELDEARA--TFRRLLSESTKKLNELAKKLGSCIEKARPYYE-------ARRKAKEAQQE 78 (239)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH-------HHHHHHHHHHH
Confidence 5777888899888888887777765443 46666677777777777777766644333221 12222447778
Q ss_pred HHHHHHHHHHHHHH
Q 031806 119 FQSVLKEFQKAQRL 132 (152)
Q Consensus 119 f~~~l~~Fq~~Qr~ 132 (152)
.+.+...|+++--.
T Consensus 79 ~q~Aa~~yerA~~~ 92 (239)
T PF05276_consen 79 AQKAALQYERANSM 92 (239)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888887664
No 119
>PRK15039 transcriptional repressor RcnR to maintain nickel and cobalt homeostasis; Provisional
Probab=21.73 E-value=2.7e+02 Score=18.95 Aligned_cols=83 Identities=13% Similarity=0.201 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHH
Q 031806 36 PSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKL 115 (152)
Q Consensus 36 l~~~Is~~if~In~~vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~~~KL 115 (152)
-...+-.-|-+|-+.|..+++++. ..+|+.++-.+|.....-++.+...+=+. -|..+... ..+. -..+..
T Consensus 7 ~k~~ll~RL~RIeGQv~gI~~Mie---e~~~C~dIl~Ql~Avr~Al~~~~~~vl~~--hl~~cv~~-~~~~---~~~~~~ 77 (90)
T PRK15039 7 DKQKLKARASKIQGQVVALKKMLD---EPHECAAVLQQIAAIRGAVNGLMREVIKG--HLTEHIVH-QGDE---LKREED 77 (90)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhc-cccc---cchHHH
Confidence 345677788999999999999987 67899999999988888777666554221 12222111 1100 112556
Q ss_pred HHHHHHHHHHHH
Q 031806 116 AKDFQSVLKEFQ 127 (152)
Q Consensus 116 ~~df~~~l~~Fq 127 (152)
..+|..++..|-
T Consensus 78 i~el~~~i~~~~ 89 (90)
T PRK15039 78 LDVVLKVLDSYI 89 (90)
T ss_pred HHHHHHHHHHHh
Confidence 777878877773
No 120
>PF06037 DUF922: Bacterial protein of unknown function (DUF922); InterPro: IPR010321 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.71 E-value=3.4e+02 Score=20.29 Aligned_cols=48 Identities=10% Similarity=0.114 Sum_probs=35.7
Q ss_pred HHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031806 47 INTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQ 94 (152)
Q Consensus 47 In~~vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~ 94 (152)
+-..+..|++.+..|+...||..|+..+......+.+-..+-.....+
T Consensus 100 a~~~a~~ie~~l~~L~~~~~C~~l~~~~~~~~~~~l~~~~~~q~~fDr 147 (161)
T PF06037_consen 100 AREMAREIEKALKGLPPDPDCQKLRAEANRRTDAILARHRQRQRDFDR 147 (161)
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 344588899999999888999999999888776666555554444433
No 121
>PRK13676 hypothetical protein; Provisional
Probab=21.52 E-value=2.8e+02 Score=19.11 Aligned_cols=21 Identities=14% Similarity=0.303 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 031806 118 DFQSVLKEFQKAQRLAAERET 138 (152)
Q Consensus 118 df~~~l~~Fq~~Qr~~~ekek 138 (152)
+-+..+.+|+..|..+..++.
T Consensus 37 ~a~~li~~F~~~q~~~~~~q~ 57 (114)
T PRK13676 37 EAKKLFDEFRALQLEIQQKQM 57 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666655553
No 122
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=21.42 E-value=3.1e+02 Score=19.44 Aligned_cols=72 Identities=11% Similarity=0.165 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hccCCCCchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 031806 68 LDLRDKLHKTRLHIGQLVKDTSSKLKQASE-----ADHHTEVSPIRKI--ADAKLAKDFQSVLKEFQKAQRLAAERETTY 140 (152)
Q Consensus 68 ~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~-----~~~~~~~~~~~k~--~~~KL~~df~~~l~~Fq~~Qr~~~ekek~~ 140 (152)
..+.+.+..+...|+..++........... .... -..-..++ ....+..+|+.+=..|..-.|....++...
T Consensus 47 ~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~~s~~~r~-~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i~Rq~~i 125 (151)
T cd00179 47 ESLVQEIKKLAKEIKGKLKELEESNEQNEALNGSSVDRI-RKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQRQLEI 125 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777776665443210 0000 00011112 224578889999999988888887777544
No 123
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=21.20 E-value=3.1e+02 Score=19.43 Aligned_cols=30 Identities=27% Similarity=0.379 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 031806 69 DLRDKLHKTRLHIGQLVKDTSSKLKQASEA 98 (152)
Q Consensus 69 ~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~ 98 (152)
+|=++|..+.+.+..+.+++.+.=+.+..+
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el 34 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAEL 34 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443334433
No 124
>COG1937 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.19 E-value=2.8e+02 Score=18.91 Aligned_cols=48 Identities=15% Similarity=0.332 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHH
Q 031806 37 SQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKD 87 (152)
Q Consensus 37 ~~~Is~~if~In~~vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~ 87 (152)
...+-+-|-+|-+.|..+.+++. ..+||.++-.+|.......+.+...
T Consensus 8 kkkl~~RlrRi~GQv~gI~rMlE---e~~~C~dVl~QIaAVr~Al~~~~~~ 55 (89)
T COG1937 8 KKKLLNRLRRIEGQVRGIERMLE---EDRDCIDVLQQIAAVRGALNGLMRE 55 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 45666778899999999999888 4899999999998888777766644
No 125
>PRK13874 conjugal transfer protein TrbJ; Provisional
Probab=21.11 E-value=4.3e+02 Score=21.07 Aligned_cols=48 Identities=13% Similarity=0.146 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHH
Q 031806 37 SQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVK 86 (152)
Q Consensus 37 ~~~Is~~if~In~~vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k 86 (152)
.+.|..+|..|.+.+..|+.++..+-..... .-+.|...+..+..|+.
T Consensus 46 l~Qi~nQiqqlqnQ~qm~~Nq~~Nl~~Lp~~--~~~~i~~~i~~~~~L~~ 93 (230)
T PRK13874 46 LQQINNQITSLQNEAQMLINQARNLASLPYS--SLQQLQQSLARTQQLLA 93 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCHH--HHHHHHHHHHHHHHHHH
Confidence 5566677777777788888888887776653 34555555555555543
No 126
>PF15469 Sec5: Exocyst complex component Sec5
Probab=20.95 E-value=3.6e+02 Score=20.04 Aligned_cols=101 Identities=11% Similarity=0.160 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhc---CCC----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC-CCch-
Q 031806 36 PSQAVAAAIFQINTAVSSFYRLVNSL---GTP----KDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHT-EVSP- 106 (152)
Q Consensus 36 l~~~Is~~if~In~~vs~l~kl~~~L---GT~----~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~-~~~~- 106 (152)
|..-|..|.-++-....+|.++-..+ ++. -.+..|.+.|......++.+++.+-+.=.+...+...- -..+
T Consensus 4 lk~LV~~Nf~~Fv~~k~tid~i~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~pll~~~~k~~~l~~~l~~l~r~ 83 (182)
T PF15469_consen 4 LKSLVKENFDKFVSCKDTIDDIYEEFRNMKTEAQQDSGTEKLEESLNEASSKANSVFKPLLERREKADKLRNALEFLQRN 83 (182)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 55667778888888877777777666 232 23567888888888888877765444333322221100 0000
Q ss_pred ------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031806 107 ------IRKIADAKLAKDFQSVLKEFQKAQRLAAER 136 (152)
Q Consensus 107 ------~~k~~~~KL~~df~~~l~~Fq~~Qr~~~ek 136 (152)
...+..-=-..||..++..|.++...+.+.
T Consensus 84 ~flF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~ 119 (182)
T PF15469_consen 84 RFLFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKY 119 (182)
T ss_pred HHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 011111113457777777777777666554
No 127
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=20.91 E-value=2.7e+02 Score=18.66 Aligned_cols=28 Identities=11% Similarity=0.105 Sum_probs=20.8
Q ss_pred cccHHHHHHHHHHHHHhhHHHHHHHHHh
Q 031806 33 SQDPSQAVAAAIFQINTAVSSFYRLVNS 60 (152)
Q Consensus 33 f~~l~~~Is~~if~In~~vs~l~kl~~~ 60 (152)
|....+.|..+|-.+.+......++...
T Consensus 3 F~~v~~ev~~sl~~l~~~~~~~~~~~~~ 30 (97)
T PF09177_consen 3 FFVVKDEVQSSLDRLESLYRRWQRLRSD 30 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6667788888888888877777665543
No 128
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=20.89 E-value=6e+02 Score=22.65 Aligned_cols=20 Identities=25% Similarity=0.243 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 031806 79 LHIGQLVKDTSSKLKQASEA 98 (152)
Q Consensus 79 ~~t~~l~k~t~~~lk~L~~~ 98 (152)
+.+...++++|..+++|..+
T Consensus 160 ~~i~~~V~~iN~l~~~Ia~L 179 (547)
T PRK08147 160 TAIGSSVDQINNYAKQIASL 179 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555554
No 129
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=20.89 E-value=4.4e+02 Score=21.03 Aligned_cols=56 Identities=16% Similarity=0.191 Sum_probs=31.3
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 031806 61 LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQSVLKEFQKA 129 (152)
Q Consensus 61 LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~~~KL~~df~~~l~~Fq~~ 129 (152)
.||+++-..++.++....+.+..--.+....|+.|..+. .+-..+...++..||.+
T Consensus 149 ~~t~keleK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~-------------~~w~~~~~~~~~~~Q~l 204 (242)
T cd07671 149 TGNPKQSEKSQNKAKQCRDAATEAERVYKQNIEQLDKAR-------------TEWETEHILTCEVFQLQ 204 (242)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHH
Confidence 466666666666666666555555555555555555431 33444555555555544
No 130
>KOG4025 consensus Putative apoptosis related protein [Function unknown]
Probab=20.78 E-value=4.1e+02 Score=20.65 Aligned_cols=13 Identities=38% Similarity=0.705 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHH
Q 031806 114 KLAKDFQSVLKEF 126 (152)
Q Consensus 114 KL~~df~~~l~~F 126 (152)
|-++-|.+.|+.|
T Consensus 164 kYSK~FS~TLKtY 176 (207)
T KOG4025|consen 164 KYSKRFSNTLKTY 176 (207)
T ss_pred HHHHHHHHHHHHH
Confidence 3555566666555
No 131
>PRK13842 conjugal transfer protein TrbJ; Provisional
Probab=20.73 E-value=3.2e+02 Score=22.51 Aligned_cols=42 Identities=10% Similarity=0.207 Sum_probs=21.0
Q ss_pred HHHHHHHhhHHHH--------------HHHHHhcCCCCCcHHHHHHHHHHHHHHHHHH
Q 031806 42 AAIFQINTAVSSF--------------YRLVNSLGTPKDTLDLRDKLHKTRLHIGQLV 85 (152)
Q Consensus 42 ~~if~In~~vs~l--------------~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~ 85 (152)
..+..||+.+.+| +.+++.+....+ .+-++|......+..|+
T Consensus 55 r~leQInnQi~ql~q~~~QlQnQ~q~y~Nm~rNl~sLp~--s~w~ql~~~l~~l~~l~ 110 (267)
T PRK13842 55 QSAEQINNQITQISQLAEQIQNQLNIYQNMLQNTAQLPN--HIWGQVENDLNRLRSIV 110 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH--HHHHHHHHHHHHHHHHH
Confidence 4455555555554 444555555554 24444444444444443
No 132
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.67 E-value=3.6e+02 Score=19.97 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 031806 115 LAKDFQSVLKEFQKAQRLAAERET 138 (152)
Q Consensus 115 L~~df~~~l~~Fq~~Qr~~~ekek 138 (152)
...||+.+|..|-..|..+..+..
T Consensus 186 ~~~dlk~~l~~~~~~qi~~~~~~~ 209 (218)
T cd07596 186 RARDLKAALKEFARLQVQYAEKIA 209 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999998887754
No 133
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=20.63 E-value=2.8e+02 Score=18.70 Aligned_cols=61 Identities=13% Similarity=0.291 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 031806 39 AVAAAIFQINTAVSSFYRLVNS-LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEAD 99 (152)
Q Consensus 39 ~Is~~if~In~~vs~l~kl~~~-LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~ 99 (152)
.+..-+..|...+..|+.-+.. +....+..++-..|+.+...-..|..+......++..|.
T Consensus 5 ~le~al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le 66 (89)
T PF13747_consen 5 SLEAALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLE 66 (89)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHH
Confidence 5666678888888888885543 555555567777777777777777777766666666654
No 134
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=20.55 E-value=2.7e+02 Score=25.58 Aligned_cols=52 Identities=10% Similarity=0.205 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHHHhhHHHHHHHHHhcCC--CCCcHHHHHHHHHHHHHHHHHH
Q 031806 34 QDPSQAVAAAIFQINTAVSSFYRLVNSLGT--PKDTLDLRDKLHKTRLHIGQLV 85 (152)
Q Consensus 34 ~~l~~~Is~~if~In~~vs~l~kl~~~LGT--~~Dt~~lR~kl~~~~~~t~~l~ 85 (152)
..+-..|...|-+||+...+|..|-++|.. ..+..+|+++=..+..+..+++
T Consensus 155 ~~~n~~i~~~V~~IN~l~~~IA~LN~~I~~~~~~~~ndLlDqRD~ll~eLS~~v 208 (624)
T PRK12714 155 NEVNSGLTSSVDEVNRLTQQIAKINGTIGSSAQNAAPDLLDQRDALVSKLVGYT 208 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHhhc
Done!