Query 031806
Match_columns 152
No_of_seqs 104 out of 262
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 08:37:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031806.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031806hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dnx_A Syntaxin-12; snare, HAB 100.0 2.4E-35 8.1E-40 215.5 13.8 119 30-148 9-129 (130)
2 1hs7_A Syntaxin VAM3; UP-and-D 99.8 8.5E-20 2.9E-24 126.5 10.7 90 31-142 6-96 (97)
3 1fio_A SSO1 protein; four heli 99.6 6.7E-14 2.3E-18 106.9 13.3 109 31-142 5-116 (196)
4 2xhe_B Syntaxin1; exocytosis, 99.3 2.5E-11 8.4E-16 97.7 13.8 113 30-142 43-170 (279)
5 1dn1_B Syntaxin 1A, syntaxin b 99.2 3E-10 1E-14 91.2 11.4 111 31-141 31-149 (267)
6 1s94_A S-syntaxin; three helix 98.9 2.7E-09 9.3E-14 80.6 7.9 112 31-142 39-158 (180)
7 1ez3_A Syntaxin-1A; three heli 98.4 1E-05 3.5E-10 57.2 12.5 110 31-140 8-125 (127)
8 3c98_B Syntaxin-1A; protein co 97.1 0.0073 2.5E-07 46.6 11.6 107 31-137 43-157 (279)
9 2p7n_A Pathogenicity island 1 81.9 6.3 0.00022 32.9 8.1 73 34-126 179-252 (407)
10 2ym9_A Cell invasion protein S 76.6 6.6 0.00023 32.2 6.6 75 33-127 134-209 (346)
11 1lyp_A CAP18; lipopolysacchari 74.1 7.5 0.00026 20.2 4.4 26 70-95 2-27 (32)
12 3ghg_A Fibrinogen alpha chain; 73.8 15 0.00052 31.9 8.3 101 31-141 60-193 (562)
13 3nzz_A Cell invasion protein S 73.7 11 0.00038 30.4 7.1 75 33-127 96-171 (308)
14 1sfc_D Protein (SNAP-25B), pro 71.2 16 0.00054 23.7 6.3 66 31-96 18-84 (87)
15 1deq_A Fibrinogen (alpha chain 68.6 50 0.0017 27.4 10.1 24 36-59 54-77 (390)
16 1n7s_D SNAP-25A; neuronal snar 67.3 18 0.00062 21.9 5.8 60 36-95 4-64 (66)
17 3b5n_D Protein transport prote 65.2 15 0.0005 22.6 4.9 57 36-92 4-61 (64)
18 1m1j_A Fibrinogen alpha subuni 63.9 69 0.0023 27.3 12.1 95 31-131 47-142 (491)
19 3nft_A Translocator protein BI 57.2 5.7 0.0002 31.9 2.4 52 75-127 141-192 (303)
20 3zqe_A Protein PRGI, cell inva 57.1 50 0.0017 26.6 7.9 85 43-127 59-168 (305)
21 1l4a_D S-SNAP25 fusion protein 55.5 25 0.00085 22.8 5.0 63 33-95 21-84 (87)
22 3r9v_A Invasin IPAD; type III 53.4 46 0.0016 26.5 7.0 76 33-128 95-172 (286)
23 1zl8_A LIN-7; heterodimer, alp 52.8 22 0.00077 21.1 3.9 42 84-125 5-47 (53)
24 1deq_A Fibrinogen (alpha chain 51.3 1E+02 0.0036 25.5 9.2 58 69-136 117-191 (390)
25 1jcd_A Major outer membrane li 50.9 22 0.00074 21.1 3.7 23 37-59 6-28 (52)
26 2zvf_A Alanyl-tRNA synthetase; 50.7 56 0.0019 23.0 6.8 49 47-97 9-57 (171)
27 2j0o_A Invasin IPAD; type III 50.7 62 0.0021 26.1 7.5 76 33-128 117-194 (318)
28 2dnx_A Syntaxin-12; snare, HAB 50.5 59 0.002 22.4 8.2 106 30-147 6-121 (130)
29 1gl2_D Syntaxin 8, vesicle tra 46.8 29 0.001 20.9 4.1 57 39-95 6-63 (65)
30 3ghg_A Fibrinogen alpha chain; 45.2 1.1E+02 0.0038 26.5 8.6 26 36-61 51-76 (562)
31 1z23_A CRK-associated substrat 44.1 83 0.0029 22.9 6.7 107 31-137 7-116 (163)
32 2q12_A DIP13 alpha, DCC-intera 41.4 1.1E+02 0.0038 23.0 8.4 26 31-56 17-42 (265)
33 2yy0_A C-MYC-binding protein; 40.1 50 0.0017 19.4 4.2 40 58-97 8-51 (53)
34 3f6n_A Virion-associated prote 39.6 94 0.0032 21.6 7.0 27 37-63 8-34 (129)
35 1zva_A E2 glycoprotein; membra 39.4 73 0.0025 20.3 6.0 21 75-95 56-76 (77)
36 2nps_D Syntaxin-6; vesicle fus 37.4 53 0.0018 20.7 4.3 56 42-97 19-75 (82)
37 3f6n_A Virion-associated prote 35.5 73 0.0025 22.2 5.0 49 74-125 11-59 (129)
38 3fx7_A Putative uncharacterize 34.2 1E+02 0.0035 20.4 8.8 45 32-78 10-54 (94)
39 1eq1_A Apolp-III, apolipophori 32.9 88 0.003 22.4 5.1 22 114-135 140-161 (166)
40 1naf_A ADP-ribosylation factor 32.4 1.4E+02 0.0048 21.5 7.4 76 41-130 59-142 (158)
41 1lq7_A Alpha3W; three helix bu 29.9 92 0.0031 18.6 7.6 51 47-97 7-62 (67)
42 3fav_B ESAT-6, 6 kDa early sec 28.7 1.1E+02 0.0036 19.0 7.8 68 30-97 7-80 (94)
43 2l3l_A Tubulin-specific chaper 28.6 1.4E+02 0.0046 20.2 7.8 78 39-142 32-109 (111)
44 3t98_B Nucleoporin NUP58/NUP45 27.0 1.3E+02 0.0046 19.6 5.0 31 32-62 9-39 (93)
45 2gyq_A YCFI, putative structur 26.1 1.9E+02 0.0064 20.9 8.1 47 49-99 30-76 (173)
46 4aj5_A SKA1, spindle and kinet 25.7 1.5E+02 0.005 19.5 7.9 46 45-97 11-58 (91)
47 3gwk_C SAG1039, putative uncha 25.1 1.3E+02 0.0044 18.7 8.2 30 32-61 12-41 (98)
48 2vs0_A Virulence factor ESXA; 24.4 1.3E+02 0.0044 18.5 7.3 29 33-61 11-39 (97)
49 3pp5_A BRK1, protein brick1; t 24.4 1.4E+02 0.0047 18.8 5.9 50 44-98 22-71 (73)
50 1t3j_A Mitofusin 1; coiled coi 24.4 1.6E+02 0.0054 19.5 6.0 29 31-59 36-64 (96)
51 1oxz_A ADP-ribosylation factor 24.0 2.2E+02 0.0075 21.0 7.1 80 42-131 76-159 (186)
52 1o3x_A ADP-ribosylation factor 22.4 2E+02 0.007 20.1 7.9 85 39-130 48-133 (140)
53 2bez_C E2 glycoprotein; coiled 21.8 1.6E+02 0.0056 18.7 5.7 28 33-60 14-41 (77)
54 1gs9_A Apolipoprotein E, APOE4 21.2 2.3E+02 0.0079 20.2 8.0 25 31-55 54-79 (165)
55 4dnd_A Syntaxin-10, SYN10; str 21.1 2.1E+02 0.0072 19.7 10.5 34 31-64 27-60 (130)
56 1bgc_A Granulocyte colony-stim 20.4 2.6E+02 0.0089 20.5 7.3 56 41-98 72-127 (174)
57 3h6p_C ESAT-6-like protein ESX 20.1 1.7E+02 0.0058 18.2 5.3 63 31-93 9-77 (96)
No 1
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=2.4e-35 Score=215.46 Aligned_cols=119 Identities=24% Similarity=0.323 Sum_probs=112.4
Q ss_pred CCccccHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC--CCCchh
Q 031806 30 QSQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHH--TEVSPI 107 (152)
Q Consensus 30 ~~ef~~l~~~Is~~if~In~~vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~--~~~~~~ 107 (152)
+|||++|++.|+++||+||++|++|++++++|||++|+++||++||.++++|++|+|+|+.+|++|+.|++. ..++++
T Consensus 9 ~~ef~~l~~~is~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~~~~~~r~ 88 (130)
T 2dnx_A 9 LRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQ 88 (130)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHH
Confidence 699999999999999999999999999999999999999999999999999999999999999999999731 235678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcC
Q 031806 108 RKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVPKES 148 (152)
Q Consensus 108 ~k~~~~KL~~df~~~l~~Fq~~Qr~~~ekek~~~~~~~~~~ 148 (152)
++++++||++||+++|++||++||.+++|||+++..|++++
T Consensus 89 ~k~q~~KL~~dF~~~L~~FQ~~Qr~~aekek~~~~~ar~~~ 129 (130)
T 2dnx_A 89 QRLQKERLMNDFSAALNNFQAVQRRVSEKEKESIARSGPSS 129 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcc
Confidence 99999999999999999999999999999999999998765
No 2
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=99.82 E-value=8.5e-20 Score=126.45 Aligned_cols=90 Identities=14% Similarity=0.227 Sum_probs=80.1
Q ss_pred CccccHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHH
Q 031806 31 SQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLH-KTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRK 109 (152)
Q Consensus 31 ~ef~~l~~~Is~~if~In~~vs~l~kl~~~LGT~~Dt~~lR~kl~-~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k 109 (152)
.||..|+..++.+|+ .|++++.+|||++|+++||++|+ .++.+|+.|.|+|+ .|..++
T Consensus 6 ~d~~~li~t~s~niq-------~l~k~~~qlGTkrD~~~LR~~l~~~l~~~~~~L~k~~~----~l~~l~---------- 64 (97)
T 1hs7_A 6 KELSNLIETFAEQSR-------VLEKECTKIGSKRDSKELRYKIETELIPNCTSVRDKIE----SNILIH---------- 64 (97)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHTTSSSCCHHHHHHHHHTHHHHHHHHHHHHH----HSTHHH----------
T ss_pred ccHHHHHHHHHHHHH-------HHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHH----Hhcccc----------
Confidence 357778888877777 89999999999999999999999 99999999999999 444441
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 031806 110 IADAKLAKDFQSVLKEFQKAQRLAAERETTYAP 142 (152)
Q Consensus 110 ~~~~KL~~df~~~l~~Fq~~Qr~~~ekek~~~~ 142 (152)
+++||++||..++++||.+||.|++|++.++.
T Consensus 65 -qkeRL~~dF~~l~~~fQ~~qr~y~ek~~e~~~ 96 (97)
T 1hs7_A 65 -QNGKLSADFKNLKTKYQSLQQSYNQRKSLFPL 96 (97)
T ss_dssp -HCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 58999999999999999999999999998764
No 3
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=99.56 E-value=6.7e-14 Score=106.88 Aligned_cols=109 Identities=11% Similarity=0.115 Sum_probs=97.9
Q ss_pred CccccHHHHHHHHHHHHHhhHHHHHHHHHhcCC-CCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchh
Q 031806 31 SQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGT-PKDTL--DLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPI 107 (152)
Q Consensus 31 ~ef~~l~~~Is~~if~In~~vs~l~kl~~~LGT-~~Dt~--~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~ 107 (152)
|+|-..++.|..+|++|+.+|..|.++...+++ +.+.+ .+|.+|+.++..|+.+++.+...|+.|..+. ..++.
T Consensus 5 ~~f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~---~~~r~ 81 (196)
T 1fio_A 5 VGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDG---IHDTN 81 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---hhhhH
Confidence 579999999999999999999999999999554 44443 6999999999999999999999999999985 34688
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 031806 108 RKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAP 142 (152)
Q Consensus 108 ~k~~~~KL~~df~~~l~~Fq~~Qr~~~ekek~~~~ 142 (152)
++.+..+|.++|++++.+|+.+|+.|.++.|..+.
T Consensus 82 ~k~~~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~~ 116 (196)
T 1fio_A 82 KQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAK 116 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999876553
No 4
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=99.33 E-value=2.5e-11 Score=97.73 Aligned_cols=113 Identities=20% Similarity=0.225 Sum_probs=99.5
Q ss_pred CCccccHHHHHHHHHHHHHhhHHHHHHHHH-hcCCCCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc------
Q 031806 30 QSQSQDPSQAVAAAIFQINTAVSSFYRLVN-SLGTPKDTL--DLRDKLHKTRLHIGQLVKDTSSKLKQASEADH------ 100 (152)
Q Consensus 30 ~~ef~~l~~~Is~~if~In~~vs~l~kl~~-~LGT~~Dt~--~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~------ 100 (152)
.++|..+++.|...|+.|+.+|..|.++.+ .|||+.+.. .++.+|+.++..|+.+++.+...|+.|.....
T Consensus 43 ~~~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~~~~~ 122 (279)
T 2xhe_B 43 MADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRAQQEG 122 (279)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 367999999999999999999999999986 589999988 89999999999999999999999999987432
Q ss_pred ----CCC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 031806 101 ----HTE--VSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAP 142 (152)
Q Consensus 101 ----~~~--~~~~~k~~~~KL~~df~~~l~~Fq~~Qr~~~ekek~~~~ 142 (152)
..+ ..+.++.+..+|.++|+.++.+|+.+|+.|.++.+..+.
T Consensus 123 ~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~ 170 (279)
T 2xhe_B 123 TFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVA 170 (279)
T ss_dssp CCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 226788999999999999999999999999999986654
No 5
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=99.15 E-value=3e-10 Score=91.17 Aligned_cols=111 Identities=18% Similarity=0.199 Sum_probs=95.5
Q ss_pred CccccHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-------CC
Q 031806 31 SQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKD-TLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADH-------HT 102 (152)
Q Consensus 31 ~ef~~l~~~Is~~if~In~~vs~l~kl~~~LGT~~D-t~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~-------~~ 102 (152)
++|-..++.|..+|..|+.+|..|+++.+.+++..+ .+.++.+|+.+...|+.+++.+...|+.|..... +.
T Consensus 31 ~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~~~~~~~~ 110 (267)
T 1dn1_B 31 DEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSS 110 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Confidence 789999999999999999999999999999887544 4689999999999999999999999999976421 11
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 031806 103 EVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYA 141 (152)
Q Consensus 103 ~~~~~~k~~~~KL~~df~~~l~~Fq~~Qr~~~ekek~~~ 141 (152)
...+.++.+...|.+.|++++.+|+.+|..|.++.+..+
T Consensus 111 ~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i 149 (267)
T 1dn1_B 111 ADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRI 149 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122567889999999999999999999999999887643
No 6
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=98.93 E-value=2.7e-09 Score=80.63 Aligned_cols=112 Identities=16% Similarity=0.214 Sum_probs=89.8
Q ss_pred CccccHHHHHHHHHHHHHhhHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-------CC
Q 031806 31 SQSQDPSQAVAAAIFQINTAVSSFYRLVNS-LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADH-------HT 102 (152)
Q Consensus 31 ~ef~~l~~~Is~~if~In~~vs~l~kl~~~-LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~-------~~ 102 (152)
++|-..++.|...|..|..+|..|+++-.. |+++.+...++.+|..+...|+.+++.+...|+.|..... ..
T Consensus 39 ~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s 118 (180)
T 1s94_A 39 EEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEHSNKSS 118 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCc
Confidence 358888999999999999999999998877 8988888899999999999999999999999999986421 11
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 031806 103 EVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAP 142 (152)
Q Consensus 103 ~~~~~~k~~~~KL~~df~~~l~~Fq~~Qr~~~ekek~~~~ 142 (152)
...+.++.+...|.+.|..++.+||.+|..|.++.|..+.
T Consensus 119 ~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~~K~~i~ 158 (180)
T 1s94_A 119 ADLRIRKTQYSTISRKFVEVMSDYNTTQIDYRDRCKARIK 158 (180)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2335678889999999999999999999999888776654
No 7
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=98.38 E-value=1e-05 Score=57.23 Aligned_cols=110 Identities=20% Similarity=0.241 Sum_probs=90.8
Q ss_pred CccccHHHHHHHHHHHHHhhHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-------CC
Q 031806 31 SQSQDPSQAVAAAIFQINTAVSSFYRLVNS-LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADH-------HT 102 (152)
Q Consensus 31 ~ef~~l~~~Is~~if~In~~vs~l~kl~~~-LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~-------~~ 102 (152)
++|-.-++.|-..|..|..+|..|.++-.. |.++.....++.+|..+...|+.+++.+-..|+.|..-.. ..
T Consensus 8 ~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s 87 (127)
T 1ez3_A 8 DEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSS 87 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCc
Confidence 468888999999999999999999886655 5666666789999999999999999999999999876321 11
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 031806 103 EVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTY 140 (152)
Q Consensus 103 ~~~~~~k~~~~KL~~df~~~l~~Fq~~Qr~~~ekek~~ 140 (152)
...+.++-+..-|.+-|.+++.+|+.+|..|-++-+.-
T Consensus 88 ~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre~~k~r 125 (127)
T 1ez3_A 88 ADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGR 125 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22356778888999999999999999999998887654
No 8
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=97.12 E-value=0.0073 Score=46.58 Aligned_cols=107 Identities=21% Similarity=0.261 Sum_probs=85.1
Q ss_pred CccccHHHHHHHHHHHHHhhHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-------C
Q 031806 31 SQSQDPSQAVAAAIFQINTAVSSFYRLVNS-LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHH-------T 102 (152)
Q Consensus 31 ~ef~~l~~~Is~~if~In~~vs~l~kl~~~-LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~-------~ 102 (152)
.+|-.-++.|...|..|..+|..|.++... +.++.+.......+..+...++.++..+...++.|..+... .
T Consensus 43 ~ef~~~ve~i~~~i~~i~~~v~el~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~i~~~~ 122 (279)
T 3c98_B 43 DEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSS 122 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccch
Confidence 567778899999999999999999987665 67888888999999999999999999988888777665321 1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031806 103 EVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERE 137 (152)
Q Consensus 103 ~~~~~~k~~~~KL~~df~~~l~~Fq~~Qr~~~eke 137 (152)
.+-+...-+...|...|.....+|...|+.+.+.-
T Consensus 123 ~~i~~~~~qtn~La~n~a~~~a~~~~~~~~~~~vv 157 (279)
T 3c98_B 123 ADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERC 157 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223445667799999999999999999887543
No 9
>2p7n_A Pathogenicity island 1 effector protein; CVR69, structural genomics, PSI-2, protein structure initiative; 2.80A {Chromobacterium violaceum}
Probab=81.85 E-value=6.3 Score=32.94 Aligned_cols=73 Identities=15% Similarity=0.097 Sum_probs=48.8
Q ss_pred ccHHHHHHHHHHHHHhh-HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHH
Q 031806 34 QDPSQAVAAAIFQINTA-VSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIAD 112 (152)
Q Consensus 34 ~~l~~~Is~~if~In~~-vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~~ 112 (152)
..|+..|+..|-.|+.+ +--+. ++..+-.+.++++++.|.+++.|...-......++..
T Consensus 179 aeLw~~Isd~I~nIksdYldvYa--------------------~IvK~YTdyyQdfNeaLSklSdyIsAGkDGNkIkFd~ 238 (407)
T 2p7n_A 179 SDLWDMISDQIGKIKDNYLGVYE--------------------NVVGQYTDFYKAFSDILSQMANWIKPGGDGNKVKLNV 238 (407)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHH--------------------HHHHHHHHHHHHHHHHHHHHGGGCC---------CCH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeeeecH
Confidence 44566666666666655 33333 3555678889999999999999886322333688888
Q ss_pred HHHHHHHHHHHHHH
Q 031806 113 AKLAKDFQSVLKEF 126 (152)
Q Consensus 113 ~KL~~df~~~l~~F 126 (152)
.++.++|...+..|
T Consensus 239 ~sfk~al~kl~~KY 252 (407)
T 2p7n_A 239 DALKAALEKLKKDF 252 (407)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998888
No 10
>2ym9_A Cell invasion protein SIPD; type 3 secretion, T3SS, needle TIP protein, H pathogen interaction, bacterial pathogenesis, TIP complex; 3.00A {Salmonella enterica subsp}
Probab=76.65 E-value=6.6 Score=32.22 Aligned_cols=75 Identities=12% Similarity=0.104 Sum_probs=58.8
Q ss_pred cccHHHHHHHHHHHHHhh-HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHH
Q 031806 33 SQDPSQAVAAAIFQINTA-VSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIA 111 (152)
Q Consensus 33 f~~l~~~Is~~if~In~~-vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~ 111 (152)
...|+..|+..|-.|+.+ +--+.. +...-.+.++++++.|.+++.|...-...+..++.
T Consensus 134 ~aeLW~~Is~~I~~I~sdYldvYa~--------------------Ivk~YTdyyQd~Ne~LSKlSd~IsaGkDGN~IkFd 193 (346)
T 2ym9_A 134 DAEIWDMVSQNISAIGDSYLGVYEN--------------------VVAVYTDFYQAFSDILSKMGGWLLPGKDGNTVKLD 193 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHH--------------------HHHHHHHHHHHHHHHHGGGGGGEEECSSSSEEEEC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHhhhccCCCCCeeeec
Confidence 467899999999999977 554544 44557788999999999999987632223358888
Q ss_pred HHHHHHHHHHHHHHHH
Q 031806 112 DAKLAKDFQSVLKEFQ 127 (152)
Q Consensus 112 ~~KL~~df~~~l~~Fq 127 (152)
..++.++|...+..|-
T Consensus 194 ~~s~k~~l~~l~~KY~ 209 (346)
T 2ym9_A 194 VTSLKNDLNSLVNKYN 209 (346)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999988885
No 11
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=74.05 E-value=7.5 Score=20.24 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031806 70 LRDKLHKTRLHIGQLVKDTSSKLKQA 95 (152)
Q Consensus 70 lR~kl~~~~~~t~~l~k~t~~~lk~L 95 (152)
||.++.....++.+-.|.+.+.|+-|
T Consensus 2 lrkrlrkfrnkikeklkkigqkiqgl 27 (32)
T 1lyp_A 2 LRKRLRKFRNKIKEKLKKIGQKIQGL 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67888888888888888888777654
No 12
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=73.77 E-value=15 Score=31.86 Aligned_cols=101 Identities=11% Similarity=0.170 Sum_probs=56.9
Q ss_pred CccccHHHHHHHHHHHHHhhHHHHHHHHHh----cCC----CCCc--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031806 31 SQSQDPSQAVAAAIFQINTAVSSFYRLVNS----LGT----PKDT--------LDLRDKLHKTRLHIGQLVKDTSSKLKQ 94 (152)
Q Consensus 31 ~ef~~l~~~Is~~if~In~~vs~l~kl~~~----LGT----~~Dt--------~~lR~kl~~~~~~t~~l~k~t~~~lk~ 94 (152)
.+|...+++|-.+++.|..+-......++. |-. ..|+ .+||.+|..+..++..-++ .|+-
T Consensus 60 rDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQls----nIrv 135 (562)
T 3ghg_A 60 QDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQ----HIQL 135 (562)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH----HHHH
T ss_pred CcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 345666777777777776665554444333 221 1121 1455555555555544442 2222
Q ss_pred hhhhccCCCCchhHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHhccc
Q 031806 95 ASEADHHTEVSPIRKIADAKLAKDFQSVL-----------------KEFQKAQRLAAERETTYA 141 (152)
Q Consensus 95 L~~~~~~~~~~~~~k~~~~KL~~df~~~l-----------------~~Fq~~Qr~~~ekek~~~ 141 (152)
|...+ ..+....+||-.|+..-| ..|..+||+..+.....+
T Consensus 136 LQsnL------edq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~a~dL 193 (562)
T 3ghg_A 136 LQKNV------RAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVIAKDL 193 (562)
T ss_dssp HHHHH------HHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHH------HHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHHhhccc
Confidence 33322 236666778877776654 578999998887754443
No 13
>3nzz_A Cell invasion protein SIPD; needle TIP protein, PRGI, SIPB, SIPC; 1.65A {Salmonella enterica} PDB: 3o02_A* 3o00_A 3o01_A* 2ym0_A
Probab=73.65 E-value=11 Score=30.37 Aligned_cols=75 Identities=12% Similarity=0.104 Sum_probs=57.1
Q ss_pred cccHHHHHHHHHHHHHhh-HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHH
Q 031806 33 SQDPSQAVAAAIFQINTA-VSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIA 111 (152)
Q Consensus 33 f~~l~~~Is~~if~In~~-vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~ 111 (152)
..+|...|+..|-.|+.+ +.-+.. +...-.+.++++++.|.+|+.|...-...+..++.
T Consensus 96 ~aElw~~I~~~I~~Ik~dYldvYa~--------------------IVk~YTdyyQdfN~aLSklS~~IsaGkDGN~IKFd 155 (308)
T 3nzz_A 96 DAEIWDMVSQNISAIGDSYLGVYEN--------------------VVAVYTDFYQAFSDILSKMGGWLLPGKDGNTVKLD 155 (308)
T ss_dssp --HHHHHHHHHHHHHHHHTHHHHHH--------------------HHHHHHHHHHHHHHHHTTGGGGEEECSSTTEEEEC
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCeeeec
Confidence 456888999999999877 554544 45567788999999999999988632333458888
Q ss_pred HHHHHHHHHHHHHHHH
Q 031806 112 DAKLAKDFQSVLKEFQ 127 (152)
Q Consensus 112 ~~KL~~df~~~l~~Fq 127 (152)
...|.++|...+..|-
T Consensus 156 ~~sfkkaL~~li~KY~ 171 (308)
T 3nzz_A 156 VTSLKNDLNSLVNKYN 171 (308)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcc
Confidence 8889999999888885
No 14
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=71.17 E-value=16 Score=23.65 Aligned_cols=66 Identities=8% Similarity=0.138 Sum_probs=53.1
Q ss_pred CccccHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031806 31 SQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTL-DLRDKLHKTRLHIGQLVKDTSSKLKQAS 96 (152)
Q Consensus 31 ~ef~~l~~~Is~~if~In~~vs~l~kl~~~LGT~~Dt~-~lR~kl~~~~~~t~~l~k~t~~~lk~L~ 96 (152)
..-+..-+....+|-.|...|..|+.+-..+|+--|.+ .+-+.|......+...++.++..+++|.
T Consensus 18 ~~~d~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll 84 (87)
T 1sfc_D 18 VTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML 84 (87)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 34466778999999999999999999999999877755 3777778888888888887777777654
No 15
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=68.57 E-value=50 Score=27.43 Aligned_cols=24 Identities=0% Similarity=-0.054 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHH
Q 031806 36 PSQAVAAAIFQINTAVSSFYRLVN 59 (152)
Q Consensus 36 l~~~Is~~if~In~~vs~l~kl~~ 59 (152)
|...|...=..|...|..|++.+.
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~~L~ 77 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSLF 77 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHH
Confidence 333333333444444444444333
No 16
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=67.28 E-value=18 Score=21.90 Aligned_cols=60 Identities=8% Similarity=0.161 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031806 36 PSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTL-DLRDKLHKTRLHIGQLVKDTSSKLKQA 95 (152)
Q Consensus 36 l~~~Is~~if~In~~vs~l~kl~~~LGT~~Dt~-~lR~kl~~~~~~t~~l~k~t~~~lk~L 95 (152)
+-...-.+|-.|.+.|+.|+.+...+|+--|.+ .+-+.|......+...++.++..++++
T Consensus 4 ~e~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~l 64 (66)
T 1n7s_D 4 RENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 345677888899999999999999998766654 366777777777777777777766654
No 17
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=65.22 E-value=15 Score=22.59 Aligned_cols=57 Identities=9% Similarity=0.140 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 031806 36 PSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLD-LRDKLHKTRLHIGQLVKDTSSKL 92 (152)
Q Consensus 36 l~~~Is~~if~In~~vs~l~kl~~~LGT~~Dt~~-lR~kl~~~~~~t~~l~k~t~~~l 92 (152)
.=..+..+|-.+.+.|+.|+.+...+|+--|.+. +-++|......+..-+...+..|
T Consensus 4 ~E~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl 61 (64)
T 3b5n_D 4 MELEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRL 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457889999999999999999999988777542 44444444444444444444333
No 18
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=63.91 E-value=69 Score=27.34 Aligned_cols=95 Identities=6% Similarity=-0.032 Sum_probs=57.6
Q ss_pred CccccHHHHHHHHHHHHHhhHHHHHHHHHhcC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHH
Q 031806 31 SQSQDPSQAVAAAIFQINTAVSSFYRLVNSLG-TPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRK 109 (152)
Q Consensus 31 ~ef~~l~~~Is~~if~In~~vs~l~kl~~~LG-T~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k 109 (152)
|-.=+|...|..+=..|...|..|++.+..+. +.++...+-..|.++..+.-..+++....+.++.. +..+++.
T Consensus 47 PSGCrLqglL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~-----eLe~ri~ 121 (491)
T 1m1j_A 47 PSGCRMQGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVST-----ELRRRIV 121 (491)
T ss_dssp CCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH
T ss_pred CCccchhhHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHH-----HHHHHHH
Confidence 44445667777777778888888888777664 55555554444444444444444444444444443 3456788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031806 110 IADAKLAKDFQSVLKEFQKAQR 131 (152)
Q Consensus 110 ~~~~KL~~df~~~l~~Fq~~Qr 131 (152)
|.++|+...| .-|+-.|.+-+
T Consensus 122 yIK~kVd~qi-~~IrvLq~~l~ 142 (491)
T 1m1j_A 122 TLKQRVATQV-NRIKALQNSIQ 142 (491)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHH
Confidence 8888887777 66665555443
No 19
>3nft_A Translocator protein BIPD; virulence, translocation, transport protein; 1.51A {Burkholderia pseudomallei} PDB: 2ixr_A 2j9t_A* 2izp_A
Probab=57.16 E-value=5.7 Score=31.90 Aligned_cols=52 Identities=10% Similarity=0.079 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 031806 75 HKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQSVLKEFQ 127 (152)
Q Consensus 75 ~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~~~KL~~df~~~l~~Fq 127 (152)
..+.++-.+.++++++.|.+++.|... ...+..++....|.+.|...+..|.
T Consensus 141 a~IVk~YTdyyQdfNe~LSKlSd~IsA-kDGN~IKFD~~sfk~~l~~l~~kY~ 192 (303)
T 3nft_A 141 ATIVEGLTKYFQSVADVMSKLQDYISA-KDDKNMKIDGGKIKALIQQVIDHLP 192 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGGEEE-ETTTEEEECHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc-cCCCeeeecHHHHHHHHHHHHHhcC
Confidence 456777888999999999999998875 3344488888888888888877763
No 20
>3zqe_A Protein PRGI, cell invasion protein SIPD; cell invasion complex, type III secretion, T3 complex, HOST pathogen interaction; HET: DXC; 2.19A {Salmonella enterica subsp} PDB: 3zqb_A* 2kv7_A 2x9c_A 2lpz_A 2jow_A
Probab=57.11 E-value=50 Score=26.58 Aligned_cols=85 Identities=12% Similarity=0.132 Sum_probs=54.4
Q ss_pred HHHHHHhh-HHHHHHHHHhc------CCCCC---cHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHhhh
Q 031806 43 AIFQINTA-VSSFYRLVNSL------GTPKD---TLDLRDKL---------------HKTRLHIGQLVKDTSSKLKQASE 97 (152)
Q Consensus 43 ~if~In~~-vs~l~kl~~~L------GT~~D---t~~lR~kl---------------~~~~~~t~~l~k~t~~~lk~L~~ 97 (152)
.++.|++. +..++.++..+ |.++- -.+|=++| ..+...-.+.++++++.|.+++.
T Consensus 59 ~~~n~~s~~~k~~kd~~~~Iiqki~~~~~~~~~S~selw~~I~~~I~~I~~~Yld~Ya~ivk~YTdyyQd~N~~LSkls~ 138 (305)
T 3zqe_A 59 LYRNAQSNTVKVFKDIDAAIIQNFRGGSGGTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGG 138 (305)
T ss_dssp HHHHHHHTHHHHHHHHHHHHCC----------CCHHHHHHHHHTSCHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTSGG
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhCCCCCccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777 56677776665 22221 12555555 55666777888999999999988
Q ss_pred hccCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 031806 98 ADHHTEVSPIRKIADAKLAKDFQSVLKEFQ 127 (152)
Q Consensus 98 ~~~~~~~~~~~k~~~~KL~~df~~~l~~Fq 127 (152)
|...-...+..++....|.++|...+..|-
T Consensus 139 ~IsaGkDGN~IkFd~~s~k~al~~l~~KY~ 168 (305)
T 3zqe_A 139 WLLPGKDGNTVKLDVTSLKNDLNSLVNKYN 168 (305)
T ss_dssp GC-------CEEECHHHHHHHHHHHHHHHT
T ss_pred HhhcCCCCCeeeecHHHHHHHHHHHHHhcc
Confidence 876322333578888889999988888775
No 21
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=55.55 E-value=25 Score=22.78 Aligned_cols=63 Identities=5% Similarity=0.180 Sum_probs=47.4
Q ss_pred cccHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031806 33 SQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLD-LRDKLHKTRLHIGQLVKDTSSKLKQA 95 (152)
Q Consensus 33 f~~l~~~Is~~if~In~~vs~l~kl~~~LGT~~Dt~~-lR~kl~~~~~~t~~l~k~t~~~lk~L 95 (152)
-+..-..+..+|-.|...|+.|+.+...+|+--|.+. +-+.|......+...++..+..+++|
T Consensus 21 ~d~~e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kl 84 (87)
T 1l4a_D 21 NDAREDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKL 84 (87)
T ss_dssp CSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHC
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778999999999999999999999998766553 66666666666666666666666554
No 22
>3r9v_A Invasin IPAD; type III secretion system, TIP protein, deoxycholate, cell I; HET: DXC; 1.90A {Shigella flexneri} SCOP: a.250.1.1 PDB: 2jaa_A 2j0n_A
Probab=53.40 E-value=46 Score=26.53 Aligned_cols=76 Identities=14% Similarity=0.132 Sum_probs=55.5
Q ss_pred cccHHHHHHHHHHHHHhh-HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC-CchhHHH
Q 031806 33 SQDPSQAVAAAIFQINTA-VSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTE-VSPIRKI 110 (152)
Q Consensus 33 f~~l~~~Is~~if~In~~-vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~-~~~~~k~ 110 (152)
+..++..|+..|-.|+.+ +.-+.. +..+-.+.++++++.|.++..+..... ..+..++
T Consensus 95 yaElwa~Is~~I~~IksdYld~Ya~--------------------lvk~yTdyyQd~N~~lsk~s~~I~agg~DGN~IkF 154 (286)
T 3r9v_A 95 HRELWAKIANSINDINEQYLKVYEH--------------------AVSSYTQMYQDFSAVLSSLAGWISPGGNDGNSVKL 154 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHH--------------------HHHHHHHHHHHHHHHHHHHGGGEEEESSSSSEEEE
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeeee
Confidence 346788888888888766 444444 455677889999999999999886212 2334888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 031806 111 ADAKLAKDFQSVLKEFQK 128 (152)
Q Consensus 111 ~~~KL~~df~~~l~~Fq~ 128 (152)
-...+.+.|...+..|..
T Consensus 155 d~~~lk~~l~~f~~kY~~ 172 (286)
T 3r9v_A 155 QVNSLKKALEELKEKYKD 172 (286)
T ss_dssp CHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHhcC
Confidence 888888888888887763
No 23
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=52.78 E-value=22 Score=21.06 Aligned_cols=42 Identities=19% Similarity=0.280 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhhhhccCCCCchhHHHHHHH-HHHHHHHHHHH
Q 031806 84 LVKDTSSKLKQASEADHHTEVSPIRKIADAK-LAKDFQSVLKE 125 (152)
Q Consensus 84 l~k~t~~~lk~L~~~~~~~~~~~~~k~~~~K-L~~df~~~l~~ 125 (152)
|.+++++.|.=|..+..+-+...+.--..+| |..||-.++.+
T Consensus 5 L~RDv~RaiELle~lq~sgevp~~KL~aLq~VLqSdF~~aVRE 47 (53)
T 1zl8_A 5 LERDVQRILELMEHVQKTGEVNNAKLASLQQVLQSEFFGAVRE 47 (53)
T ss_dssp HHHHHHHHHHHHHHHGGGSSSTHHHHHHHHHHHSCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 4455666555555554432333333333455 78888888765
No 24
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=51.26 E-value=1e+02 Score=25.51 Aligned_cols=58 Identities=16% Similarity=0.252 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHH-----------------HHHHHHHHHHHHH
Q 031806 69 DLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKD-----------------FQSVLKEFQKAQR 131 (152)
Q Consensus 69 ~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~~~KL~~d-----------------f~~~l~~Fq~~Qr 131 (152)
+||.+|..+..+++.-+- .|+.|.... ..+....+||-.| ++--+..|+..||
T Consensus 117 eLe~~i~~lk~~V~~q~~----~ir~Lq~~l------~~q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~vD~e~ye~qqK 186 (390)
T 1deq_A 117 DLRSRIEILRRKVIEQVQ----RINLLQKNV------RDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLEDYKNQQK 186 (390)
T ss_pred HHHHHHHHHHHHHHHHhH----HHHHHHHHH------HHHHHHHHHHHHHHHHHhcccccccchhhhhhccHHHHHHHHH
Confidence 677777777766665553 444444433 1244444444333 3444667888888
Q ss_pred HHHHH
Q 031806 132 LAAER 136 (152)
Q Consensus 132 ~~~ek 136 (152)
+...-
T Consensus 187 QL~qv 191 (390)
T 1deq_A 187 QLEQV 191 (390)
T ss_pred HHHhh
Confidence 75544
No 25
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=50.88 E-value=22 Score=21.11 Aligned_cols=23 Identities=9% Similarity=0.008 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Q 031806 37 SQAVAAAIFQINTAVSSFYRLVN 59 (152)
Q Consensus 37 ~~~Is~~if~In~~vs~l~kl~~ 59 (152)
.+.+++.|..+|..|..|...+.
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~ 28 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDAN 28 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888887655
No 26
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=50.68 E-value=56 Score=23.00 Aligned_cols=49 Identities=6% Similarity=-0.021 Sum_probs=37.1
Q ss_pred HHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031806 47 INTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASE 97 (152)
Q Consensus 47 In~~vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~ 97 (152)
+...-..|..+...|.++.+ ++.++|..+.+...++-|++...-.++..
T Consensus 9 ~~~~~~~l~~~a~~Lk~~~~--~l~~~v~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 9 VEEMERLLREASSILRVEPA--KLPKTVERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp HHHHHHHHHHHHHTTTCCTT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567777788888755 79999999999999988888777766554
No 27
>2j0o_A Invasin IPAD; type III secretion, cell invasion, T3SS, plasmid, virulence; 3.00A {Shigella flexneri} SCOP: a.250.1.1
Probab=50.66 E-value=62 Score=26.14 Aligned_cols=76 Identities=14% Similarity=0.132 Sum_probs=57.1
Q ss_pred cccHHHHHHHHHHHHHhh-HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC-CchhHHH
Q 031806 33 SQDPSQAVAAAIFQINTA-VSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTE-VSPIRKI 110 (152)
Q Consensus 33 f~~l~~~Is~~if~In~~-vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~-~~~~~k~ 110 (152)
...++..|+..|-.|+.+ +--+.. +..+-.+.++++++.|.+++.+...-. .....++
T Consensus 117 ~~elw~~Is~~I~~I~sdYld~Ya~--------------------ivk~yTdyyQ~~ne~lskls~~I~aGg~DGn~IkF 176 (318)
T 2j0o_A 117 HRELWAKIANSINDINEQYLKVYEH--------------------AVSSYTQMYQDFSAVLSSLAGWISPGGNDGNSVKL 176 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHH--------------------HHHHHHHHHHHHHHHHHHHGGGEEECSSSSSCEEE
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCeeee
Confidence 456888999999888876 544444 455677889999999999999876212 2335888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 031806 111 ADAKLAKDFQSVLKEFQK 128 (152)
Q Consensus 111 ~~~KL~~df~~~l~~Fq~ 128 (152)
-...+.++|...+..|..
T Consensus 177 d~~~~k~~l~~~~~kY~~ 194 (318)
T 2j0o_A 177 QVNSLKKALEELKEKYKD 194 (318)
T ss_dssp CHHHHHHHHHHHHHHHSS
T ss_pred cHHHHHHHHHHHHHHhcC
Confidence 888899998888887764
No 28
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.55 E-value=59 Score=22.39 Aligned_cols=106 Identities=14% Similarity=0.147 Sum_probs=67.6
Q ss_pred CCccccHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHH------HHHHHHHHHHHHHHHHHHHHhhhhccCC-
Q 031806 30 QSQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKL------HKTRLHIGQLVKDTSSKLKQASEADHHT- 102 (152)
Q Consensus 30 ~~ef~~l~~~Is~~if~In~~vs~l~kl~~~LGT~~Dt~~lR~kl------~~~~~~t~~l~k~t~~~lk~L~~~~~~~- 102 (152)
+.+...+. . ....|.++|..|...+..|. .+...| ..+.+++..+...|++.++..+.....-
T Consensus 6 ~~d~~ef~-~---l~~~is~~I~~In~~vs~l~------r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~ 75 (130)
T 2dnx_A 6 SGQLRDFS-S---IIQTCSGNIQRISQATAQIK------NLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELG 75 (130)
T ss_dssp SCCSCCHH-H---HHHHHHHHHHHHHHHHHHHH------HHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhHH-H---HHHHHHHHHHHHHHHHHHHH------HHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555542 2 35667777777777777553 244444 7788888888888999988888765310
Q ss_pred CCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCc
Q 031806 103 EVS---PIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVPKE 147 (152)
Q Consensus 103 ~~~---~~~k~~~~KL~~df~~~l~~Fq~~Qr~~~ekek~~~~~~~~~ 147 (152)
... ....-...|+. ..-...+|+.+-+.+..-++.++..-++.
T Consensus 76 ~~~~~~~~~~~r~~k~q--~~KL~~dF~~~L~~FQ~~Qr~~aekek~~ 121 (130)
T 2dnx_A 76 SLPLPLSTSEQRQQRLQ--KERLMNDFSAALNNFQAVQRRVSEKEKES 121 (130)
T ss_dssp HSCCCSSHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111 11122245555 45678889999999888888777654443
No 29
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=46.81 E-value=29 Score=20.85 Aligned_cols=57 Identities=11% Similarity=0.184 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031806 39 AVAAAIFQINTAVSSFYRLVNSLGTPKDTL-DLRDKLHKTRLHIGQLVKDTSSKLKQA 95 (152)
Q Consensus 39 ~Is~~if~In~~vs~l~kl~~~LGT~~Dt~-~lR~kl~~~~~~t~~l~k~t~~~lk~L 95 (152)
....+|-.|...|+.|+.+...+|.--|.. .+-+.|......+...++.++..++++
T Consensus 6 eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l 63 (65)
T 1gl2_D 6 EQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLV 63 (65)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344567777788888888888887655543 366666666666666666666665544
No 30
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=45.20 E-value=1.1e+02 Score=26.52 Aligned_cols=26 Identities=0% Similarity=-0.043 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhc
Q 031806 36 PSQAVAAAIFQINTAVSSFYRLVNSL 61 (152)
Q Consensus 36 l~~~Is~~if~In~~vs~l~kl~~~L 61 (152)
|...|..+=..|...|..|+..+..|
T Consensus 51 LQglLdkqErDltkrINELKnqLEdl 76 (562)
T 3ghg_A 51 MKGLIDEVNQDFTNRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred hhhhHHhhcCcHHHHHHHHHHHHHHH
Confidence 34555555555666666666666655
No 31
>1z23_A CRK-associated substrate; four-helix bundle, cell adhesion; NMR {Rattus norvegicus}
Probab=44.09 E-value=83 Score=22.93 Aligned_cols=107 Identities=13% Similarity=0.110 Sum_probs=58.7
Q ss_pred CccccHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC---CCchh
Q 031806 31 SQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHT---EVSPI 107 (152)
Q Consensus 31 ~ef~~l~~~Is~~if~In~~vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~---~~~~~ 107 (152)
-|.+...+.+...=+.+...|+.|-.++...|...+-...-+.+......+...+-.+...|..+-.+.... .....
T Consensus 7 Ldld~A~E~L~rLQ~~v~~sVs~Ll~fv~s~~~~~~WR~~~~~le~~i~~i~~a~~~v~~Sl~efL~Farga~~nA~~~~ 86 (163)
T 1z23_A 7 LELEVAVETLARLQQGVSTTVAHLLDLVGSASGPGGWRSTSEPQEPPVQDLKAAVAAVHGAVHELLEFARSAVSSATHTS 86 (163)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSSCCSSSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 345667788888888888889999999877654333111001122222223333333334444443332210 11122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031806 108 RKIADAKLAKDFQSVLKEFQKAQRLAAERE 137 (152)
Q Consensus 108 ~k~~~~KL~~df~~~l~~Fq~~Qr~~~eke 137 (152)
.+....||.+.++..-..||-+.+......
T Consensus 87 d~~L~~kl~r~Lq~l~ds~qiL~~~~~~Ld 116 (163)
T 1z23_A 87 DRTLHAKLSRQLQKMEDVYQTLVVHGQVLD 116 (163)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345667888888887778888877755543
No 32
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=41.44 E-value=1.1e+02 Score=23.01 Aligned_cols=26 Identities=12% Similarity=0.195 Sum_probs=13.1
Q ss_pred CccccHHHHHHHHHHHHHhhHHHHHH
Q 031806 31 SQSQDPSQAVAAAIFQINTAVSSFYR 56 (152)
Q Consensus 31 ~ef~~l~~~Is~~if~In~~vs~l~k 56 (152)
|.|......+...|-.+...+..|-+
T Consensus 17 P~FR~~l~~~E~~~~~l~~~l~kl~k 42 (265)
T 2q12_A 17 PQTRSLLGVFEEDATAISNYMNQLYQ 42 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55655555555555554444443333
No 33
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=40.06 E-value=50 Score=19.40 Aligned_cols=40 Identities=15% Similarity=0.180 Sum_probs=25.8
Q ss_pred HHhcC----CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031806 58 VNSLG----TPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASE 97 (152)
Q Consensus 58 ~~~LG----T~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~ 97 (152)
-..|| +.-|-..|+..+.+++.++..|.+...+.=.+|..
T Consensus 8 k~~LG~~~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 8 KHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp --------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556 44556678888888888888888777766666653
No 34
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=39.58 E-value=94 Score=21.64 Aligned_cols=27 Identities=11% Similarity=0.245 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhcCC
Q 031806 37 SQAVAAAIFQINTAVSSFYRLVNSLGT 63 (152)
Q Consensus 37 ~~~Is~~if~In~~vs~l~kl~~~LGT 63 (152)
...|+.-+..+-.-+..++.++..+|.
T Consensus 8 ~~ei~e~~~~i~~l~~~Ik~il~~~~s 34 (129)
T 3f6n_A 8 QKEVSEILSDQKSMKADIKAILELLGS 34 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 333444444444444444444444554
No 35
>1zva_A E2 glycoprotein; membrane fusion, virus entry, coiled C conformational change, viral protein; 1.50A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_B
Probab=39.38 E-value=73 Score=20.30 Aligned_cols=21 Identities=14% Similarity=0.196 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 031806 75 HKTRLHIGQLVKDTSSKLKQA 95 (152)
Q Consensus 75 ~~~~~~t~~l~k~t~~~lk~L 95 (152)
..-....++|+++++++|-.|
T Consensus 56 ~~ev~~~r~lA~~iNEcV~~~ 76 (77)
T 1zva_A 56 QKEIDRLNEVAKNLNESLIDL 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 334556677777777776443
No 36
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=37.42 E-value=53 Score=20.71 Aligned_cols=56 Identities=7% Similarity=0.130 Sum_probs=37.7
Q ss_pred HHHHHHHhhHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031806 42 AAIFQINTAVSSFYRLVNSLGTPKDTL-DLRDKLHKTRLHIGQLVKDTSSKLKQASE 97 (152)
Q Consensus 42 ~~if~In~~vs~l~kl~~~LGT~~Dt~-~lR~kl~~~~~~t~~l~k~t~~~lk~L~~ 97 (152)
.+|-.|...|..|+.+...+|.--|.. .+-+.|......+...++.++..++++..
T Consensus 19 ~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~ 75 (82)
T 2nps_D 19 EQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSH 75 (82)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666777777777777654433 36667777777777777777777766655
No 37
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=35.51 E-value=73 Score=22.22 Aligned_cols=49 Identities=10% Similarity=0.187 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHHHHHHHHH
Q 031806 74 LHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQSVLKE 125 (152)
Q Consensus 74 l~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~~~KL~~df~~~l~~ 125 (152)
|.++.+.+..|..+|...++++.... +......-.-.|+.+|+...+..
T Consensus 11 i~e~~~~i~~l~~~Ik~il~~~~st~---~~~~~lEsiAAKIIkDisdkId~ 59 (129)
T 3f6n_A 11 VSEILSDQKSMKADIKAILELLGSQN---PIKESLETVAAKIVNDLTKLIND 59 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC---CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCc---chhhhHHHHHHHHHHHHHHHHhc
Confidence 33444444455555555555555532 11223344456677777665543
No 38
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=34.19 E-value=1e+02 Score=20.42 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=34.8
Q ss_pred ccccHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 031806 32 QSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTR 78 (152)
Q Consensus 32 ef~~l~~~Is~~if~In~~vs~l~kl~~~LGT~~Dt~~lR~kl~~~~ 78 (152)
|.......+..=...++..+..|..-...|||.+|- =|.+....-
T Consensus 10 Elr~Fa~~L~~F~d~Lq~~~~~L~~~f~~L~sWqDq--kr~kFee~f 54 (94)
T 3fx7_A 10 EVREFVGHLERFKELLREEVNSLSNHFHNLESWRDA--RRDKFSEVL 54 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCSH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhH--HHHHHHHHH
Confidence 466677788888888888999999999999999994 355554433
No 39
>1eq1_A Apolp-III, apolipophorin-III; five helix-bundle, "helix-short helix-helix" recognition motif, lipid binding protein; NMR {Manduca sexta} SCOP: a.63.1.1
Probab=32.86 E-value=88 Score=22.37 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031806 114 KLAKDFQSVLKEFQKAQRLAAE 135 (152)
Q Consensus 114 KL~~df~~~l~~Fq~~Qr~~~e 135 (152)
|+..-|.+-++.-+.+|+++.+
T Consensus 140 kiK~Ay~dF~K~aeevqKK~he 161 (166)
T 1eq1_A 140 KIKQAYDDFVKHAEEVQKKLHE 161 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555555655544
No 40
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=32.41 E-value=1.4e+02 Score=21.47 Aligned_cols=76 Identities=17% Similarity=0.175 Sum_probs=40.9
Q ss_pred HHHHHHHHhhHHHHHHHHHhcCCC---CC-cHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHH
Q 031806 41 AAAIFQINTAVSSFYRLVNSLGTP---KD-TLD----LRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIAD 112 (152)
Q Consensus 41 s~~if~In~~vs~l~kl~~~LGT~---~D-t~~----lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~~ 112 (152)
-+-|-.+.++|.-|..++..+-.. .+ ..+ |-..+...+..+-.|+.++. .+-......
T Consensus 59 ~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e~~--------------ddee~L~el 124 (158)
T 1naf_A 59 VNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTE--------------DNDEALAEI 124 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHHHHHHHHHTHHHHHHHHHHHCC--------------SCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHcc--------------CCHHHHHHH
Confidence 347888899999999999887321 11 112 33333333333333333221 111122222
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 031806 113 AKLAKDFQSVLKEFQKAQ 130 (152)
Q Consensus 113 ~KL~~df~~~l~~Fq~~Q 130 (152)
=.+-.++..+|..|..+.
T Consensus 125 L~~ND~Ln~vl~kY~~~~ 142 (158)
T 1naf_A 125 LQANDNLTQVINLYKQLV 142 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHh
Confidence 345668888888888773
No 41
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=29.86 E-value=92 Score=18.60 Aligned_cols=51 Identities=24% Similarity=0.357 Sum_probs=38.6
Q ss_pred HHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhh
Q 031806 47 INTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQL-----VKDTSSKLKQASE 97 (152)
Q Consensus 47 In~~vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l-----~k~t~~~lk~L~~ 97 (152)
+-..|..|+.-++.||....-.+|..+-.++..++.+| +|.+.+.+++|..
T Consensus 7 leekvkaleekvkalggggrieelkkkweelkkkieelggggevkkveeevkklee 62 (67)
T 1lq7_A 7 LEEKVKALEEKVKALGGGGRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEE 62 (67)
T ss_dssp HHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 44567888999999999888888888888887777665 5666666666554
No 42
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=28.67 E-value=1.1e+02 Score=18.96 Aligned_cols=68 Identities=9% Similarity=0.159 Sum_probs=41.3
Q ss_pred CCccccHHHHHHHHHHHHHhhHHHHHHHHHhcCC---CCCcHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhh
Q 031806 30 QSQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGT---PKDTLDLRD---KLHKTRLHIGQLVKDTSSKLKQASE 97 (152)
Q Consensus 30 ~~ef~~l~~~Is~~if~In~~vs~l~kl~~~LGT---~~Dt~~lR~---kl~~~~~~t~~l~k~t~~~lk~L~~ 97 (152)
..+.......|....-.|...+..|+..+..|.. .......+. +.+.-....++++..++..|.....
T Consensus 7 ~~~l~~~a~~~~~~~~~i~~~l~~l~~~v~~l~~~W~G~A~~af~~~~~~w~~~~~~~~~~L~~i~~~l~~~~~ 80 (94)
T 3fav_B 7 FAGIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQNLARTISEAGQ 80 (94)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777888888899999999999998888842 122233333 3444444444555555555544443
No 43
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=28.63 E-value=1.4e+02 Score=20.15 Aligned_cols=78 Identities=13% Similarity=0.106 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHH
Q 031806 39 AVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKD 118 (152)
Q Consensus 39 ~Is~~if~In~~vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~~~KL~~d 118 (152)
.+..=...|+..+..|+.++..+| +.+.|..+...|..|-+.+++..-=|..+ |
T Consensus 32 ~~~~F~~~F~~~~~~Ie~~l~~~~-------~~~~ld~i~~~I~~Lqk~v~das~fLp~Y-------------------D 85 (111)
T 2l3l_A 32 NSHFFVATFARERAAVEELLERAE-------SVERLEEAASRLQGLQKLINDSVFFLAAY-------------------D 85 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC-------SHHHHHHHHHHHHHHHHHHHHSTTTSCHH-------------------H
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCc-------hhhHHHHHHHHHHHHHHHHHHHhhhccHH-------------------H
Confidence 444446667777888888888776 45556666656655555444443222222 4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccC
Q 031806 119 FQSVLKEFQKAQRLAAERETTYAP 142 (152)
Q Consensus 119 f~~~l~~Fq~~Qr~~~ekek~~~~ 142 (152)
.+.+...-+.+|..+.+.....+|
T Consensus 86 ~R~~q~~i~~L~~~l~e~r~~l~P 109 (111)
T 2l3l_A 86 LRQGQEALARLQAALAERRRGLQP 109 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 444444555555556555544444
No 44
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=27.05 E-value=1.3e+02 Score=19.63 Aligned_cols=31 Identities=6% Similarity=-0.011 Sum_probs=24.6
Q ss_pred ccccHHHHHHHHHHHHHhhHHHHHHHHHhcC
Q 031806 32 QSQDPSQAVAAAIFQINTAVSSFYRLVNSLG 62 (152)
Q Consensus 32 ef~~l~~~Is~~if~In~~vs~l~kl~~~LG 62 (152)
=|..++.+-...|..--+.|..|++.+..+.
T Consensus 9 yF~~lv~~fe~rL~~Yr~~IeelE~~L~s~s 39 (93)
T 3t98_B 9 YFRVLVQQFEVQLQQYRQQIEELENHLATQA 39 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3778888888888888888888888777654
No 45
>2gyq_A YCFI, putative structural protein; structural genomics, APC6105, iron-binding, PSI, protein STR initiative; 1.40A {Rhodopseudomonas palustris} SCOP: a.25.1.4
Probab=26.13 E-value=1.9e+02 Score=20.91 Aligned_cols=47 Identities=9% Similarity=0.135 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 031806 49 TAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEAD 99 (152)
Q Consensus 49 ~~vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~ 99 (152)
+.+..|.++.+.+.. |+|+..|..-.+.|.+-+..+.+.+..+..-+
T Consensus 30 q~~~aL~~~~~~a~~----p~Lk~~l~~H~~eT~~qi~rLe~i~~~lg~~~ 76 (173)
T 2gyq_A 30 QITKALPKMIEQATN----RDLSQGLTSHLEETQKQIERLDQVFKKLGQKP 76 (173)
T ss_dssp HHHHHHHHHHHHCCS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHcCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 336666666665443 89999999999999999988888888887644
No 46
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=25.73 E-value=1.5e+02 Score=19.54 Aligned_cols=46 Identities=13% Similarity=0.155 Sum_probs=27.7
Q ss_pred HHHHhhHHHHHHHHHh--cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031806 45 FQINTAVSSFYRLVNS--LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASE 97 (152)
Q Consensus 45 f~In~~vs~l~kl~~~--LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~ 97 (152)
..||..|+.|++.+.. +| +| |.++.-+..+-. =+-.+++.|.++..
T Consensus 11 ~hineKIs~ikk~L~Lr~~g--qd-P~lk~~L~Kig~----Ei~~l~eLLn~~E~ 58 (91)
T 4aj5_A 11 SHVNEKIGNIKKTLSLRNCG--QE-PTLKTVLNKIGD----EIIVINELLNKLEL 58 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HC-HHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc--cC-hhHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 4678888888886654 55 44 677744444333 33455566666654
No 47
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=25.13 E-value=1.3e+02 Score=18.72 Aligned_cols=30 Identities=10% Similarity=0.103 Sum_probs=20.7
Q ss_pred ccccHHHHHHHHHHHHHhhHHHHHHHHHhc
Q 031806 32 QSQDPSQAVAAAIFQINTAVSSFYRLVNSL 61 (152)
Q Consensus 32 ef~~l~~~Is~~if~In~~vs~l~kl~~~L 61 (152)
+.......+......|...+..|...+..|
T Consensus 12 ~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l 41 (98)
T 3gwk_C 12 ELRSSAQKYTAGSQQVTEVLNLLTQEQAVI 41 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677777777777777777777766
No 48
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=24.43 E-value=1.3e+02 Score=18.45 Aligned_cols=29 Identities=21% Similarity=0.168 Sum_probs=16.8
Q ss_pred cccHHHHHHHHHHHHHhhHHHHHHHHHhc
Q 031806 33 SQDPSQAVAAAIFQINTAVSSFYRLVNSL 61 (152)
Q Consensus 33 f~~l~~~Is~~if~In~~vs~l~kl~~~L 61 (152)
.......+......|...+..|+..+..|
T Consensus 11 l~~~A~~~~~~~~~l~~~l~~L~~~~~~L 39 (97)
T 2vs0_A 11 IRAKSQSYGQGSDQIRQILSDLTRAQGEI 39 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555566666666666655555
No 49
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=24.42 E-value=1.4e+02 Score=18.83 Aligned_cols=50 Identities=12% Similarity=0.141 Sum_probs=31.5
Q ss_pred HHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 031806 44 IFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEA 98 (152)
Q Consensus 44 if~In~~vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~ 98 (152)
|..|+.+|..+=.+++.+++ .-|.||..+-++...+-..+.=.=.+|.++
T Consensus 22 ie~is~~I~~~v~FLN~F~~-----sce~KLa~ln~kL~~lE~~L~iLEAklsSI 71 (73)
T 3pp5_A 22 IEDMSINIQKIVEFLNKFEL-----STRNKLSDLNEKLTILDRQVDYLEATFKTV 71 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 55566666666666665554 467888888888777776655554455443
No 50
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=24.41 E-value=1.6e+02 Score=19.52 Aligned_cols=29 Identities=7% Similarity=0.122 Sum_probs=12.7
Q ss_pred CccccHHHHHHHHHHHHHhhHHHHHHHHH
Q 031806 31 SQSQDPSQAVAAAIFQINTAVSSFYRLVN 59 (152)
Q Consensus 31 ~ef~~l~~~Is~~if~In~~vs~l~kl~~ 59 (152)
.-|..|+..|..--..++.-+..|++-+.
T Consensus 36 ~tfarLc~~Vd~t~~eL~~EI~~L~~eI~ 64 (96)
T 1t3j_A 36 TTFARLCQQVDMTQKHLEEEIARLSKEID 64 (96)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333
No 51
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=24.03 E-value=2.2e+02 Score=20.97 Aligned_cols=80 Identities=18% Similarity=0.187 Sum_probs=39.9
Q ss_pred HHHHHHHhhHHHHHHHHHhc--CC-CCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHH
Q 031806 42 AAIFQINTAVSSFYRLVNSL--GT-PKD-TLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAK 117 (152)
Q Consensus 42 ~~if~In~~vs~l~kl~~~L--GT-~~D-t~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~~~KL~~ 117 (152)
+-|-.++++|.-|..++..+ |. ... ..+|-..|+. .| +..-..|.+|.+-. ..+-......=.+-.
T Consensus 76 ~eLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~---~C----k~~qp~i~~Li~e~---~ddee~L~elL~~ND 145 (186)
T 1oxz_A 76 NAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQ---RC----ERMRPTLFRLASDT---EDNDEALAEILQAND 145 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSCSCTTTTHHHHHHHHH---HH----HHHHHHHHHHHHHC---CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccCccccHHHHHHHHH---HH----HHHHHHHHHHHHHc---cCCHHHHHHHHHhhH
Confidence 36777888888888888887 22 221 2333222222 22 12222222332211 011112222334667
Q ss_pred HHHHHHHHHHHHHH
Q 031806 118 DFQSVLKEFQKAQR 131 (152)
Q Consensus 118 df~~~l~~Fq~~Qr 131 (152)
++..+|..|..+..
T Consensus 146 ~Ln~vl~kY~~~~~ 159 (186)
T 1oxz_A 146 NLTQVINLYKQLVR 159 (186)
T ss_dssp HHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 88888888887744
No 52
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=22.45 E-value=2e+02 Score=20.06 Aligned_cols=85 Identities=12% Similarity=0.076 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHH
Q 031806 39 AVAAAIFQINTAVSSFYRLVNSLGTPKDTLD-LRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAK 117 (152)
Q Consensus 39 ~Is~~if~In~~vs~l~kl~~~LGT~~Dt~~-lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~~~KL~~ 117 (152)
+.-+-|-.+.++|.-|..++..+-...-.+. =-+=|.++.+.| +..-..|.+|.+-. ..+-......=.+-.
T Consensus 48 k~~~eLe~v~~n~~LL~EML~~~~p~~~~~~~d~Ell~eL~~~c----k~~qp~i~~li~e~---~ddee~l~elL~~ND 120 (140)
T 1o3x_A 48 KRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRC----ERMRPTLFRLASDT---EDNDEALAEILQAND 120 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHH----HHHHHHHHHHHTTC---TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccHHHHHHHHHHH----HHHHHHHHHHHHHc---cCCHHHHHHHHHhhH
Confidence 3334788899999999999998732211111 012222222222 22223333333211 111112223334677
Q ss_pred HHHHHHHHHHHHH
Q 031806 118 DFQSVLKEFQKAQ 130 (152)
Q Consensus 118 df~~~l~~Fq~~Q 130 (152)
++..+|..|..+.
T Consensus 121 ~ln~vl~kY~~~~ 133 (140)
T 1o3x_A 121 NLTQVINLYKQLV 133 (140)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8888888888764
No 53
>2bez_C E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 1.6A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_A 1zvb_A
Probab=21.76 E-value=1.6e+02 Score=18.69 Aligned_cols=28 Identities=14% Similarity=0.218 Sum_probs=19.3
Q ss_pred cccHHHHHHHHHHHHHhhHHHHHHHHHh
Q 031806 33 SQDPSQAVAAAIFQINTAVSSFYRLVNS 60 (152)
Q Consensus 33 f~~l~~~Is~~if~In~~vs~l~kl~~~ 60 (152)
|......|+..+-..+..++.++..|+.
T Consensus 14 FN~A~~~i~~g~~tts~AL~kiQdVVN~ 41 (77)
T 2bez_C 14 FNKAISQIQESLTTTSTALGKLQDVVNQ 41 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666667777777777777777776664
No 54
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=21.17 E-value=2.3e+02 Score=20.22 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=13.6
Q ss_pred Ccc-ccHHHHHHHHHHHHHhhHHHHH
Q 031806 31 SQS-QDPSQAVAAAIFQINTAVSSFY 55 (152)
Q Consensus 31 ~ef-~~l~~~Is~~if~In~~vs~l~ 55 (152)
+++ ..|...|+.++-.+++.+..|+
T Consensus 54 sel~qel~~~l~~~ld~l~~~~~~l~ 79 (165)
T 1gs9_A 54 SQVTQELRALMDETMKELKAYKSELE 79 (165)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445 4555556666666666544433
No 55
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=21.06 E-value=2.1e+02 Score=19.69 Aligned_cols=34 Identities=9% Similarity=-0.020 Sum_probs=22.2
Q ss_pred CccccHHHHHHHHHHHHHhhHHHHHHHHHhcCCC
Q 031806 31 SQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTP 64 (152)
Q Consensus 31 ~ef~~l~~~Is~~if~In~~vs~l~kl~~~LGT~ 64 (152)
..|....+.|..+|-++.+......++...-+++
T Consensus 27 DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~ 60 (130)
T 4dnd_A 27 DPFFVVRGEVQKAVNTARGLYQRWCELLQESAAV 60 (130)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 3577888999999999888888877766654443
No 56
>1bgc_A Granulocyte colony-stimulating factor; cytokine; 1.70A {Bos taurus} SCOP: a.26.1.1 PDB: 1rhg_A 2d9q_A* 1cd9_A* 1pgr_A 1bge_A 1bgd_A 1gnc_A
Probab=20.41 E-value=2.6e+02 Score=20.50 Aligned_cols=56 Identities=13% Similarity=0.223 Sum_probs=43.0
Q ss_pred HHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 031806 41 AAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEA 98 (152)
Q Consensus 41 s~~if~In~~vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~ 98 (152)
...+-+|.+-.-.++-.+.-|...-. ++..++..++-.|..|+..+.+.++.+...
T Consensus 72 e~CL~~i~sGL~~yQ~~L~~L~~~~~--~~~~~~~~Lq~d~~~L~~~i~q~~k~~~~~ 127 (174)
T 1bgc_A 72 RGCLNQLHGGLFLYQGLLQALAGISP--ELAPTLDTLQLDVTDFATNIWLQMEDLGAA 127 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSST--TTHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhCc--ccchHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 44566666666677777777754333 566899999999999999999999998654
No 57
>3h6p_C ESAT-6-like protein ESXR; four-helix bundle, structural genomics, PSI-2, protein struc initiative, TB structural genomics consortium; 1.91A {Mycobacterium tuberculosis} PDB: 2kg7_B 3q4h_B
Probab=20.09 E-value=1.7e+02 Score=18.21 Aligned_cols=63 Identities=8% Similarity=-0.014 Sum_probs=27.4
Q ss_pred CccccHHHHHHHHHHHHHhhHHHHHHHHHhc-----CCCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031806 31 SQSQDPSQAVAAAIFQINTAVSSFYRLVNSL-----GTPKDT-LDLRDKLHKTRLHIGQLVKDTSSKLK 93 (152)
Q Consensus 31 ~ef~~l~~~Is~~if~In~~vs~l~kl~~~L-----GT~~Dt-~~lR~kl~~~~~~t~~l~k~t~~~lk 93 (152)
++.......|....-+|+..+..|+..+..| |...+. ..+..+.+.-....++.+..++..|.
T Consensus 9 ~~~~~~a~~i~~~~~~i~~~l~~l~~~v~~L~~~W~G~A~~ay~~~~~~W~~~~~~l~~~L~~i~~~l~ 77 (96)
T 3h6p_C 9 PAMMAHAGDMAGYAGTLQSLGADIASEQAVLSSAWQGDTGITYQGWQTQWNQALEDLVRAYQSMSGTHE 77 (96)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHTGGGCCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566677777777788888888877777 332221 12334444444444444444444333
Done!