Query 031809
Match_columns 152
No_of_seqs 135 out of 1126
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 05:39:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031809.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031809hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00135 gatC glutamyl-tRNA(G 100.0 1.1E-31 2.4E-36 190.7 10.4 93 58-150 1-93 (93)
2 PRK00034 gatC aspartyl/glutamy 100.0 3.1E-31 6.6E-36 188.6 10.5 95 56-150 1-95 (95)
3 COG0721 GatC Asp-tRNAAsn/Glu-t 100.0 3.8E-31 8.3E-36 190.1 9.9 96 56-151 1-96 (96)
4 PRK12821 aspartyl/glutamyl-tRN 99.9 1.1E-24 2.4E-29 190.4 10.6 91 55-145 386-477 (477)
5 PRK12820 bifunctional aspartyl 99.9 2.6E-23 5.7E-28 191.2 10.8 109 41-150 595-706 (706)
6 PF02686 Glu-tRNAGln: Glu-tRNA 99.9 2.2E-22 4.8E-27 135.9 5.2 72 74-145 1-72 (72)
7 TIGR01827 gatC_rel Asp-tRNA(As 99.6 3.1E-16 6.6E-21 107.7 6.4 62 84-147 4-68 (73)
8 KOG4247 Mitochondrial DNA poly 99.1 3E-10 6.5E-15 85.7 7.2 105 39-147 30-135 (175)
9 PF13318 DUF4089: Protein of u 67.4 25 0.00054 22.2 5.3 41 63-103 2-42 (50)
10 PF13833 EF-hand_8: EF-hand do 61.8 11 0.00024 22.8 2.9 31 56-86 3-34 (54)
11 PRK07235 amidase; Provisional 59.1 19 0.00041 32.5 5.1 52 56-108 4-55 (502)
12 PF07128 DUF1380: Protein of u 57.6 13 0.00027 28.6 3.1 33 57-89 26-58 (139)
13 PRK02166 hypothetical protein; 51.8 18 0.00038 28.8 3.2 37 58-94 125-161 (184)
14 COG3079 Uncharacterized protei 50.8 25 0.00055 28.1 3.9 38 59-96 127-165 (186)
15 PRK04758 hypothetical protein; 42.3 33 0.00072 27.2 3.4 37 58-94 123-160 (181)
16 PRK01736 hypothetical protein; 40.8 36 0.00079 27.0 3.4 36 59-94 128-164 (190)
17 PF02969 TAF: TATA box binding 33.9 1.2E+02 0.0026 20.1 4.6 39 55-93 1-40 (66)
18 PF11181 YflT: Heat induced st 32.3 38 0.00082 23.8 2.1 23 66-88 74-96 (103)
19 KOG1584 Sulfotransferase [Gene 30.8 1.3E+02 0.0028 25.9 5.4 67 55-125 198-266 (297)
20 PHA02780 hypothetical protein; 25.6 57 0.0012 21.9 1.9 30 39-68 13-42 (73)
21 COG4860 Uncharacterized protei 25.4 44 0.00096 26.1 1.5 36 54-91 90-125 (170)
22 PF11116 DUF2624: Protein of u 25.3 1.3E+02 0.0028 21.2 3.7 27 58-84 15-41 (85)
23 COG2047 Uncharacterized protei 25.1 1.4E+02 0.003 25.1 4.4 40 60-99 202-241 (258)
24 PF14495 Cytochrom_C550: Cytoc 24.7 26 0.00056 26.8 0.1 59 5-68 54-116 (135)
25 cd00051 EFh EF-hand, calcium b 24.4 1.4E+02 0.0031 16.7 4.1 32 54-85 13-44 (63)
26 cd08318 Death_NMPP84 Death dom 24.3 2.3E+02 0.0049 19.3 4.9 29 57-85 4-41 (86)
27 TIGR03798 ocin_TIGR03798 bacte 23.0 1.1E+02 0.0024 19.6 2.9 28 58-85 25-52 (64)
28 PRK13717 conjugal transfer pro 22.7 1.6E+02 0.0034 22.4 4.0 30 64-93 58-87 (128)
29 PF05397 Med15_fungi: Mediator 20.8 63 0.0014 23.7 1.5 31 69-99 22-54 (115)
30 PF04201 TPD52: Tumour protein 20.5 1.5E+02 0.0033 23.3 3.7 29 71-99 23-51 (162)
31 PF07308 DUF1456: Protein of u 20.5 1.5E+02 0.0032 19.8 3.1 30 56-85 12-41 (68)
32 KOG3026 Splicing factor SPF30 20.2 3.4E+02 0.0074 22.9 5.8 43 61-103 10-52 (262)
No 1
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=99.97 E-value=1.1e-31 Score=190.66 Aligned_cols=93 Identities=30% Similarity=0.572 Sum_probs=91.0
Q ss_pred CChhHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhccCCCCCCCCccccCCCCCCCCCCCCCCCCCHHHHHhcCCC
Q 031809 58 LEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYLREDIPKTFKNRESMIAAVPS 137 (152)
Q Consensus 58 I~~E~v~~LA~LArL~L~eeE~e~~~~~l~~Il~~~d~L~evDt~~VeP~~~~~~~~~~LReD~v~~~~~~e~iL~NAp~ 137 (152)
|++++|+|||+||||+|+++|++.+.++|++|++||++|+++||+||+||+|+.+..++||+|++.++.+++.+|+|||+
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~~l~~il~~~~~L~~vdt~~v~p~~~~~~~~~~lReD~~~~~~~~e~~l~nap~ 80 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAGDLDKILGFVEQLNEVDTENVEPMTHPLEISNVLREDEPEEPLSRDDILKNAPE 80 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCCCcccCccccccCCCCCCCCCCCCHHHHHhcCch
Confidence 68999999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred CCCCcEEeccccc
Q 031809 138 YDEPYIKVPKVLN 150 (152)
Q Consensus 138 ~e~gyf~VPkVie 150 (152)
.++|||+||||||
T Consensus 81 ~~~~~f~VPkVie 93 (93)
T TIGR00135 81 KEDGFIKVPKIIE 93 (93)
T ss_pred hcCCeEecCeecC
Confidence 9999999999986
No 2
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=99.97 E-value=3.1e-31 Score=188.64 Aligned_cols=95 Identities=32% Similarity=0.562 Sum_probs=93.0
Q ss_pred CCCChhHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhccCCCCCCCCccccCCCCCCCCCCCCCCCCCHHHHHhcC
Q 031809 56 SSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYLREDIPKTFKNRESMIAAV 135 (152)
Q Consensus 56 ~~I~~E~v~~LA~LArL~L~eeE~e~~~~~l~~Il~~~d~L~evDt~~VeP~~~~~~~~~~LReD~v~~~~~~e~iL~NA 135 (152)
|.|++++|+|||+||||+|+++|++.+.++|++|++||++|+++||++|+||+|+.+..++||+|++..+.+++++|+||
T Consensus 1 M~i~~e~i~~la~La~l~l~~ee~~~~~~~l~~il~~~~~l~~vd~~~vep~~~~~~~~~~lReD~~~~~~~~e~~l~na 80 (95)
T PRK00034 1 MAITREEVKHLAKLARLELSEEELEKFAGQLNKILDFVEQLNEVDTEGVEPTTHPLDMKNVLREDVVTESLPREEALKNA 80 (95)
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccCcccccCCCCCCCCCCCCCHHHHHhcC
Confidence 57999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred CCCCCCcEEeccccc
Q 031809 136 PSYDEPYIKVPKVLN 150 (152)
Q Consensus 136 p~~e~gyf~VPkVie 150 (152)
|..++|||+|||||+
T Consensus 81 p~~~~~yf~VPkvve 95 (95)
T PRK00034 81 PESEDGYFKVPKVIE 95 (95)
T ss_pred chhcCCeEecCeecC
Confidence 999999999999986
No 3
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=3.8e-31 Score=190.05 Aligned_cols=96 Identities=29% Similarity=0.558 Sum_probs=93.8
Q ss_pred CCCChhHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhccCCCCCCCCccccCCCCCCCCCCCCCCCCCHHHHHhcC
Q 031809 56 SSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYLREDIPKTFKNRESMIAAV 135 (152)
Q Consensus 56 ~~I~~E~v~~LA~LArL~L~eeE~e~~~~~l~~Il~~~d~L~evDt~~VeP~~~~~~~~~~LReD~v~~~~~~e~iL~NA 135 (152)
|+|++++|+|||+||||.|+++|.+.|..+|++|++||++|+++||+||+||+|+.+..++||+|++..++.++++|+||
T Consensus 1 ~~i~~e~v~~la~LarL~lseee~e~~~~~l~~Il~~veql~evD~~~vep~~~~~~~~~~lReD~~~~~~~~~~~l~na 80 (96)
T COG0721 1 MAIDREEVKHLAKLARLELSEEELEKFATQLEDILGYVEQLNEVDTEGVEPTTHPLEVSNVLREDEVTEGLDREELLANA 80 (96)
T ss_pred CccCHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhccccCCCcccccccccccccCCCCCCCcCHHHHHhcC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEecccccC
Q 031809 136 PSYDEPYIKVPKVLNK 151 (152)
Q Consensus 136 p~~e~gyf~VPkVie~ 151 (152)
|+.++|||+||||+++
T Consensus 81 p~~~dg~~~VPki~~~ 96 (96)
T COG0721 81 PESEDGFFKVPKIIEE 96 (96)
T ss_pred CcccCCeEEeeeeccC
Confidence 9999999999999874
No 4
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=99.91 E-value=1.1e-24 Score=190.37 Aligned_cols=91 Identities=19% Similarity=0.312 Sum_probs=88.0
Q ss_pred CCCCChhHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhccCCCCCCCCccccC-CCCCCCCCCCCCCCCCHHHHHh
Q 031809 55 RSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAD-SETGYLREDIPKTFKNRESMIA 133 (152)
Q Consensus 55 ~~~I~~E~v~~LA~LArL~L~eeE~e~~~~~l~~Il~~~d~L~evDt~~VeP~~~~~-~~~~~LReD~v~~~~~~e~iL~ 133 (152)
.+++++|+|+|+|+||||+++|||++++.+++++|++++|+|+++||+|||||+|+. +..++||||+|.++.++|++|+
T Consensus 386 k~~ItkEeVkKLAkLARLeLSEEElEkl~~dLn~ILdyVEkLnEVDTegVEPM~hp~e~~~nvLREDeV~~sl~rEeaLs 465 (477)
T PRK12821 386 KQQLNKDELKKLARLVMFDLDDAELEKLQVEFKDITSSFKQVEKIDTTNVKPMYAPFSNSPTPLRKDKDVVQKHQKILLK 465 (477)
T ss_pred cccCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHcccCcCCCCCcccCcccccCCCCCCCCCCCCCHHHHHh
Confidence 367999999999999999999999999999999999999999999999999999997 5789999999999999999999
Q ss_pred cCCCCCCCcEEe
Q 031809 134 AVPSYDEPYIKV 145 (152)
Q Consensus 134 NAp~~e~gyf~V 145 (152)
|||+.++|||+|
T Consensus 466 NAPesEdGfFkV 477 (477)
T PRK12821 466 NCKETLGGFVKV 477 (477)
T ss_pred cCccccCCEEEC
Confidence 999999999997
No 5
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=99.89 E-value=2.6e-23 Score=191.16 Aligned_cols=109 Identities=13% Similarity=0.200 Sum_probs=97.1
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhccCCCCCCCCccccCCCCCCCCCC
Q 031809 41 DYNNRTRNCSTTTTRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYLRED 120 (152)
Q Consensus 41 ~~~~~~~~~ss~~~~~~I~~E~v~~LA~LArL~L~eeE~e~~~~~l~~Il~~~d~L~evDt~~VeP~~~~~~~~~~LReD 120 (152)
++|-+.....-......=++++|+|||+||||+|+++|++.+.++|++||+||++|++||| +|+||+|+.+..++||+|
T Consensus 595 el~i~~~~~~~~~~~~~~~~~~V~~iA~LARL~l~eeE~~~~~~~L~~IL~~ve~L~evdt-~VeP~~~~~~~~~~lReD 673 (706)
T PRK12820 595 ELGLLDLGDADQLPGDAEKEDLIDHLSWVSRIGFAEAERAAIESALADAEELAAQLEDIAC-DEEPLFSPAPAANRMGEG 673 (706)
T ss_pred HhCchhhcccccccccccchHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhhccC-CCCCCcCccccccCCCCC
Confidence 3444443333344556788999999999999999999999999999999999999999999 599999999999999999
Q ss_pred CCCCCC---CHHHHHhcCCCCCCCcEEeccccc
Q 031809 121 IPKTFK---NRESMIAAVPSYDEPYIKVPKVLN 150 (152)
Q Consensus 121 ~v~~~~---~~e~iL~NAp~~e~gyf~VPkVie 150 (152)
++.++. +++++|+|||+.++|||+|||||+
T Consensus 674 ~v~~~~~~~~~e~~L~nAP~~edg~f~VPkIIe 706 (706)
T PRK12820 674 LEARECSFAATGEILKNAPAVKGDYFKVAGILD 706 (706)
T ss_pred cCCCCCCccCHHHHHhcCccccCCeEecCeecC
Confidence 999997 599999999999999999999986
No 6
>PF02686 Glu-tRNAGln: Glu-tRNAGln amidotransferase C subunit; InterPro: IPR003837 Glu-tRNAGln amidotransferase is a heterotrimeric enzyme that is required for correct decoding of glutamine codons during translation. The Glu-tRNA Gln amidotransferase enzyme is an important translational fidelity mechanism replacing incorrectly charged Glu-tRNAGln with the correct Gln-tRANGln via transmidation of the misacylated Glu-tRNAGln []. This activity supplements the lack of glutaminyl-tRNA synthetase activity in Gram-positive eubacteria, cyanobacteria, archaea, and organelles [].; GO: 0006450 regulation of translational fidelity; PDB: 2DQN_C 3IP4_C 2G5I_C 2F2A_C 2G5H_C 2DF4_C 3AL0_C 3KFU_G 3H0R_I 3H0L_U ....
Probab=99.86 E-value=2.2e-22 Score=135.86 Aligned_cols=72 Identities=28% Similarity=0.515 Sum_probs=52.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHhhccCCCCCCCCccccCCCCCCCCCCCCCCCCCHHHHHhcCCCCCCCcEEe
Q 031809 74 LTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYLREDIPKTFKNRESMIAAVPSYDEPYIKV 145 (152)
Q Consensus 74 L~eeE~e~~~~~l~~Il~~~d~L~evDt~~VeP~~~~~~~~~~LReD~v~~~~~~e~iL~NAp~~e~gyf~V 145 (152)
|+++|++.+.++|++|++||++|+++||+||+||+|+.+..++||+|++..+.+++++|+|||.+++|||+|
T Consensus 1 l~eeE~~~~~~~l~~il~~~~~l~~vdt~~v~p~~~~~~~~~~lReD~~~~~~~~e~iL~nAp~~~~~~f~V 72 (72)
T PF02686_consen 1 LTEEELEKLTKQLNDILDYVEKLQEVDTEGVEPMYHPVEMSNPLREDEVEESLDREEILKNAPEKEDGYFVV 72 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHTTGGGS--TT----S-SS-SS--EB-S-----CTHHHHHTT-SSEETTEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccccccccCCCCCCCCCCCCCHHHHHhccccccCCeeEC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999998
No 7
>TIGR01827 gatC_rel Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase, subunit C, putative. This model represents a family small family related to GatC, the third subunit of an enzyme for completing the charging of tRNA(Gln) by amidating the Glu-tRNA(Gln). The few known archaea that contain a member of this family appear to produce Asn-tRNA(Asn) by an analogous amidotransferase reaction. This protein is proposed to substitute for GatC in the charging of both tRNAs.
Probab=99.65 E-value=3.1e-16 Score=107.67 Aligned_cols=62 Identities=19% Similarity=0.404 Sum_probs=54.2
Q ss_pred HHHHHHHH-HHHhhccCCCCCCCCccccCCCCCCCCCCCCCCCCC--HHHHHhcCCCCCCCcEEecc
Q 031809 84 PKIRQVID-WFGQLQDVDLDSVDPALRADSETGYLREDIPKTFKN--RESMIAAVPSYDEPYIKVPK 147 (152)
Q Consensus 84 ~~l~~Il~-~~d~L~evDt~~VeP~~~~~~~~~~LReD~v~~~~~--~e~iL~NAp~~e~gyf~VPk 147 (152)
++-..|+. +-++|++|| ||+||+|+.+..++||+|++..+++ ++.+|+|||..++|||+|||
T Consensus 4 ~~~~~~~~~~~e~L~evd--~VeP~~~~~~~~n~lReD~~~~s~~~~re~iL~NAP~~edg~F~Vp~ 68 (73)
T TIGR01827 4 KEAEEILEEFSERLEDVD--EEEETYYISDGSNKFREDEEPRCDPEFKKKMLENAPVSDDGYVVVER 68 (73)
T ss_pred HHHHHHHHHHHHHHHccC--CCCCcccccccccCCCCCcCCCCcchhHHHHHHcCCcccCCEEEEec
Confidence 34444443 446788889 9999999999999999999999998 99999999999999999998
No 8
>KOG4247 consensus Mitochondrial DNA polymerase accessory subunit [Replication, recombination and repair]
Probab=99.09 E-value=3e-10 Score=85.68 Aligned_cols=105 Identities=14% Similarity=0.213 Sum_probs=94.5
Q ss_pred cccccccccCCCCCCCCCCCChhHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhccCCCCCCCCccccCC-CCCCC
Q 031809 39 DYDYNNRTRNCSTTTTRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADS-ETGYL 117 (152)
Q Consensus 39 s~~~~~~~~~~ss~~~~~~I~~E~v~~LA~LArL~L~eeE~e~~~~~l~~Il~~~d~L~evDt~~VeP~~~~~~-~~~~L 117 (152)
++.|.||++. |...+|.+|+...+.||.+|+...++.++. ...+..-+.....|.-+|++||+||..+.+ ...+.
T Consensus 30 depydskiqe-sqlspmpqidaklinhlerlslvrfdseqa---vanlrssirvakrlelvdvegvepmhtvwedqecpt 105 (175)
T KOG4247|consen 30 DEPYDSKIQE-SQLSPMPQIDAKLINHLERLSLVRFDSEQA---VANLRSSIRVAKRLELVDVEGVEPMHTVWEDQECPT 105 (175)
T ss_pred CCcccchhhh-hhcCCcchhhHHHHHHHHhhhheeecHHHH---HHHHHHHHhHHhheeeeeccCccchhhhcccccCCc
Confidence 6677788876 678899999999999999999999998886 788899999999999999999999988864 56778
Q ss_pred CCCCCCCCCCHHHHHhcCCCCCCCcEEecc
Q 031809 118 REDIPKTFKNRESMIAAVPSYDEPYIKVPK 147 (152)
Q Consensus 118 ReD~v~~~~~~e~iL~NAp~~e~gyf~VPk 147 (152)
-||+..+.+..++++.||.-.-++||+.|.
T Consensus 106 fedveedplpieevfrnaslrfddffvtpp 135 (175)
T KOG4247|consen 106 FEDVEEDPLPIEEVFRNASLRFDDFFVTPP 135 (175)
T ss_pred ccccccCCcCHHHHHhcccccccceeecCC
Confidence 899999999999999999999999999885
No 9
>PF13318 DUF4089: Protein of unknown function (DUF4089)
Probab=67.38 E-value=25 Score=22.18 Aligned_cols=41 Identities=10% Similarity=0.101 Sum_probs=37.2
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhccCCCCC
Q 031809 63 VPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDS 103 (152)
Q Consensus 63 v~~LA~LArL~L~eeE~e~~~~~l~~Il~~~d~L~evDt~~ 103 (152)
|...+++.-|.|+++-...+..+|..|..+.+.+.++.+.+
T Consensus 2 v~~~a~llgL~l~~~~r~~V~~n~~ri~~mA~~v~~fpL~~ 42 (50)
T PF13318_consen 2 VDQMAALLGLPLDEEWRPGVVANFERIAAMAQLVMEFPLPD 42 (50)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 45678899999999999999999999999999999998854
No 10
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=61.75 E-value=11 Score=22.83 Aligned_cols=31 Identities=16% Similarity=0.267 Sum_probs=25.4
Q ss_pred CCCChhHHHHHHHHcCCC-CChhHHHHHHHHH
Q 031809 56 SSLEPPDVPRLAQTARIS-LTPHEVEEFAPKI 86 (152)
Q Consensus 56 ~~I~~E~v~~LA~LArL~-L~eeE~e~~~~~l 86 (152)
..|+.+++.++.....+. ++++|+..+...+
T Consensus 3 G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~ 34 (54)
T PF13833_consen 3 GKITREEFRRALSKLGIKDLSEEEVDRLFREF 34 (54)
T ss_dssp SEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHH
T ss_pred CEECHHHHHHHHHHhCCCCCCHHHHHHHHHhc
Confidence 458899999999777888 9999987776654
No 11
>PRK07235 amidase; Provisional
Probab=59.14 E-value=19 Score=32.52 Aligned_cols=52 Identities=13% Similarity=0.320 Sum_probs=43.6
Q ss_pred CCCChhHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhccCCCCCCCCcc
Q 031809 56 SSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPAL 108 (152)
Q Consensus 56 ~~I~~E~v~~LA~LArL~L~eeE~e~~~~~l~~Il~~~d~L~evDt~~VeP~~ 108 (152)
...++++++.+|.--.++|.+.+++.+..-++..++..+.+.++. +-+++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 55 (502)
T PRK07235 4 KRPTLEQLREIAAQFGLDLTDEELASYLSLMQASLDAYDRIDELP-DEIPPVK 55 (502)
T ss_pred CCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHhccCHHHHHHHHh-hcccccC
Confidence 457999999999999999999999999999999999888888873 3444443
No 12
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=57.59 E-value=13 Score=28.64 Aligned_cols=33 Identities=24% Similarity=0.283 Sum_probs=27.7
Q ss_pred CCChhHHHHHHHHcCCCCChhHHHHHHHHHHHH
Q 031809 57 SLEPPDVPRLAQTARISLTPHEVEEFAPKIRQV 89 (152)
Q Consensus 57 ~I~~E~v~~LA~LArL~L~eeE~e~~~~~l~~I 89 (152)
..|+++|.++|.=.-.++|++|++.+...+.++
T Consensus 26 IWT~eDV~~~a~gme~~lTd~E~~aVL~~I~~~ 58 (139)
T PF07128_consen 26 IWTREDVRALADGMEYNLTDDEARAVLARIGDI 58 (139)
T ss_pred EecHHHHHHHHhcCCCCCCHHHHHHHHHHHhcC
Confidence 468999999999778999999998877776654
No 13
>PRK02166 hypothetical protein; Reviewed
Probab=51.76 E-value=18 Score=28.81 Aligned_cols=37 Identities=14% Similarity=0.164 Sum_probs=29.4
Q ss_pred CChhHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHH
Q 031809 58 LEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFG 94 (152)
Q Consensus 58 I~~E~v~~LA~LArL~L~eeE~e~~~~~l~~Il~~~d 94 (152)
=.+|-|+.++..|+++.++++-+.-...+..|++|+.
T Consensus 125 e~~E~l~Dl~~Iaql~~d~dd~ee~E~al~Ei~EyvR 161 (184)
T PRK02166 125 EAKEVLQDLAAISQVQDALEESEDGETDYMEVMEYLR 161 (184)
T ss_pred HHHHHHHHHHHHHccCCCCCCCchHHHHHHHHHHHHH
Confidence 4567788999999999877666677777888888875
No 14
>COG3079 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.81 E-value=25 Score=28.07 Aligned_cols=38 Identities=16% Similarity=0.327 Sum_probs=31.7
Q ss_pred ChhHHHHHHHHcCCCCCh-hHHHHHHHHHHHHHHHHHhh
Q 031809 59 EPPDVPRLAQTARISLTP-HEVEEFAPKIRQVIDWFGQL 96 (152)
Q Consensus 59 ~~E~v~~LA~LArL~L~e-eE~e~~~~~l~~Il~~~d~L 96 (152)
..|-++.++.+|++..++ ++.++....+..|++|+...
T Consensus 127 ~~EaldDL~~iaQlg~Deded~EE~~~~leEiiEyvRva 165 (186)
T COG3079 127 AGEALDDLANIAQLGYDEDEDQEELEESLEEIIEYVRVA 165 (186)
T ss_pred HHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHH
Confidence 357788899999999988 56888999999999998643
No 15
>PRK04758 hypothetical protein; Validated
Probab=42.28 E-value=33 Score=27.18 Aligned_cols=37 Identities=16% Similarity=0.162 Sum_probs=29.2
Q ss_pred CChhHHHHHHHHcCCCCCh-hHHHHHHHHHHHHHHHHH
Q 031809 58 LEPPDVPRLAQTARISLTP-HEVEEFAPKIRQVIDWFG 94 (152)
Q Consensus 58 I~~E~v~~LA~LArL~L~e-eE~e~~~~~l~~Il~~~d 94 (152)
=.+|-++.++..|++.+++ ++-+.-...+..|++|+.
T Consensus 123 e~~E~L~Dl~~Iaql~~d~~ed~ee~E~al~El~EyvR 160 (181)
T PRK04758 123 EGEEALQDLARLAQASSDDFDAAEEDDTALAEIEEFVR 160 (181)
T ss_pred HHHHHHHHHHHHHccCCCcccCchHHHHHHHHHHHHHH
Confidence 4567889999999999874 445667788888888875
No 16
>PRK01736 hypothetical protein; Reviewed
Probab=40.81 E-value=36 Score=26.99 Aligned_cols=36 Identities=19% Similarity=0.381 Sum_probs=29.3
Q ss_pred ChhHHHHHHHHcCCCCChh-HHHHHHHHHHHHHHHHH
Q 031809 59 EPPDVPRLAQTARISLTPH-EVEEFAPKIRQVIDWFG 94 (152)
Q Consensus 59 ~~E~v~~LA~LArL~L~ee-E~e~~~~~l~~Il~~~d 94 (152)
.+|-|+.++..|++.++++ +-+.....+..|++|+.
T Consensus 128 ~~E~l~Dl~~Ia~~~~d~~ed~ee~e~~~~Ei~EyvR 164 (190)
T PRK01736 128 TGEAIDDLRNIAQLGYDEDEDQEELAQSLEEVIEYVR 164 (190)
T ss_pred HHHHHHHHHHHHhcCCCccccchHHHHHHHHHHHHHH
Confidence 3788999999999998753 55777888888888875
No 17
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=33.90 E-value=1.2e+02 Score=20.15 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=25.1
Q ss_pred CCCCChhHHHHHHHHcCC-CCChhHHHHHHHHHHHHHHHH
Q 031809 55 RSSLEPPDVPRLAQTARI-SLTPHEVEEFAPKIRQVIDWF 93 (152)
Q Consensus 55 ~~~I~~E~v~~LA~LArL-~L~eeE~e~~~~~l~~Il~~~ 93 (152)
|..+++|.|+.+|.-.-| +|+++-...+..+++--|..+
T Consensus 1 ~s~~~~esvk~iAes~Gi~~l~de~a~~La~dveyrlrei 40 (66)
T PF02969_consen 1 MSVFSQESVKDIAESLGISNLSDEAAKALAEDVEYRLREI 40 (66)
T ss_dssp -----HHHHHHHHHHTT---B-HHHHHHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999 899998888887776555443
No 18
>PF11181 YflT: Heat induced stress protein YflT
Probab=32.34 E-value=38 Score=23.84 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=20.2
Q ss_pred HHHHcCCCCChhHHHHHHHHHHH
Q 031809 66 LAQTARISLTPHEVEEFAPKIRQ 88 (152)
Q Consensus 66 LA~LArL~L~eeE~e~~~~~l~~ 88 (152)
-++|.+|.|+++|.+.+.+++++
T Consensus 74 ~~~l~~lGl~~~ea~~y~~~l~~ 96 (103)
T PF11181_consen 74 RSKLESLGLSEDEAERYEEELDQ 96 (103)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHC
Confidence 38889999999999999998863
No 19
>KOG1584 consensus Sulfotransferase [General function prediction only]
Probab=30.82 E-value=1.3e+02 Score=25.93 Aligned_cols=67 Identities=10% Similarity=0.179 Sum_probs=44.3
Q ss_pred CCCCChhHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHH--HhhccCCCCCCCCccccCCCCCCCCCCCCCCC
Q 031809 55 RSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWF--GQLQDVDLDSVDPALRADSETGYLREDIPKTF 125 (152)
Q Consensus 55 ~~~I~~E~v~~LA~LArL~L~eeE~e~~~~~l~~Il~~~--d~L~evDt~~VeP~~~~~~~~~~LReD~v~~~ 125 (152)
|..=.+.+|++||+--=-.+++||+++++.+ .+++.+ +.|.++.+.-.+-+.+. ....+|.-++.++
T Consensus 198 mk~dp~~~ikrlaeFLg~~~~~Ee~~~~~~~--~~~~~~~~n~l~nle~n~~~~~~~~--~~~F~RKG~vGDW 266 (297)
T KOG1584|consen 198 MKADPKGEIKKLAEFLGCPFTKEEEDKGVVH--LSFELCSLNPLSNLEVNKTEKLLHK--ISPFFRKGEVGDW 266 (297)
T ss_pred hhhCHHHHHHHHHHHhCCCCCHHHHhhhhHH--HHHHHHhhccccCceeccccccccc--chhhhcCCCcccc
Confidence 4445678999999999999999998887765 345544 33433333222222222 2668999999887
No 20
>PHA02780 hypothetical protein; Provisional
Probab=25.64 E-value=57 Score=21.90 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=23.9
Q ss_pred cccccccccCCCCCCCCCCCChhHHHHHHH
Q 031809 39 DYDYNNRTRNCSTTTTRSSLEPPDVPRLAQ 68 (152)
Q Consensus 39 s~~~~~~~~~~ss~~~~~~I~~E~v~~LA~ 68 (152)
|.+++|++.+.|+...-+.|+.+++-.|..
T Consensus 13 std~nsiisq~st~d~d~eided~i~elln 42 (73)
T PHA02780 13 STDLNSIISQQSTMDTDMEIDEDEIMELLN 42 (73)
T ss_pred chhHhhhhccccccccceeechHHHHHHHH
Confidence 667788888888888888999888876654
No 21
>COG4860 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.44 E-value=44 Score=26.10 Aligned_cols=36 Identities=19% Similarity=0.299 Sum_probs=24.2
Q ss_pred CCCCCChhHHHHHHHHcCCCCChhHHHHHHHHHHHHHH
Q 031809 54 TRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVID 91 (152)
Q Consensus 54 ~~~~I~~E~v~~LA~LArL~L~eeE~e~~~~~l~~Il~ 91 (152)
..-+.+-+++..+-.++- ++++|++.+.+++...++
T Consensus 90 iNf~~Sl~dL~dii~~~f--~sdeev~ey~~ei~~l~e 125 (170)
T COG4860 90 INFMGSLSDLADIIYAAF--LSDEEVKEYEDEIKALME 125 (170)
T ss_pred EEEEEeHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHH
Confidence 345567777777766654 478888777777666544
No 22
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=25.29 E-value=1.3e+02 Score=21.19 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=15.3
Q ss_pred CChhHHHHHHHHcCCCCChhHHHHHHH
Q 031809 58 LEPPDVPRLAQTARISLTPHEVEEFAP 84 (152)
Q Consensus 58 I~~E~v~~LA~LArL~L~eeE~e~~~~ 84 (152)
||.+++.++|+-=-+.+++++++.+..
T Consensus 15 iT~~eLlkyskqy~i~it~~QA~~I~~ 41 (85)
T PF11116_consen 15 ITAKELLKYSKQYNISITKKQAEQIAN 41 (85)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 555566666665566666555544443
No 23
>COG2047 Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]
Probab=25.14 E-value=1.4e+02 Score=25.08 Aligned_cols=40 Identities=15% Similarity=0.297 Sum_probs=35.0
Q ss_pred hhHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhccC
Q 031809 60 PPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDV 99 (152)
Q Consensus 60 ~E~v~~LA~LArL~L~eeE~e~~~~~l~~Il~~~d~L~ev 99 (152)
+.-++.|++.--|+++-+.+++=.+++++|++-++.+++.
T Consensus 202 kaVL~vl~k~lgiEid~~~Le~RAke~E~ii~k~~emee~ 241 (258)
T COG2047 202 KAVLEVLCKMLGIEIDMEALEERAKEMEEIIEKLKEMEEM 241 (258)
T ss_pred HHHHHHHHHHhCceecHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999988887543
No 24
>PF14495 Cytochrom_C550: Cytochrome c-550 domain; PDB: 3ARC_V 1IZL 3A0H_V 3A0B_v 1E29_A 1F1C_B 1S5L_V 4FBY_i 3PRR_V 3PRQ_V ....
Probab=24.71 E-value=26 Score=26.80 Aligned_cols=59 Identities=22% Similarity=0.186 Sum_probs=28.8
Q ss_pred cceeeecCCC-CceeecccccccccCCCCcccccccccccccccCCCC---CCCCCCCChhHHHHHHH
Q 031809 5 GLLLLKGAAP-KHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCST---TTTRSSLEPPDVPRLAQ 68 (152)
Q Consensus 5 ~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ss---~~~~~~I~~E~v~~LA~ 68 (152)
.|-.|++|+| |.-|...-.+ -+.|+. |--++.+...-|+..+ ...|-.++.|++..||-
T Consensus 54 ~le~L~~AtPpRDNi~~LVdY----mk~Pts-YDG~~~i~e~hp~~~s~di~p~mr~ltdddL~~iAg 116 (135)
T PF14495_consen 54 SLEDLAGATPPRDNIEALVDY----MKNPTS-YDGEESISELHPSIKSADIFPKMRNLTDDDLYAIAG 116 (135)
T ss_dssp SHHHHHTSSS--SSHHHHHHH----HHS-B--TTSSSBGTTTS-STTCTTTSGGGTS--HHHHHHHHH
T ss_pred CHHHHccCCCCcccHHHHHHH----hhCCCC-cCCchhHHHhCcCcccchhhHhhcCCCHHHHHHHHH
Confidence 3556889999 4444221111 123443 3335544444454444 34566788888888874
No 25
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=24.35 E-value=1.4e+02 Score=16.72 Aligned_cols=32 Identities=9% Similarity=0.231 Sum_probs=24.8
Q ss_pred CCCCCChhHHHHHHHHcCCCCChhHHHHHHHH
Q 031809 54 TRSSLEPPDVPRLAQTARISLTPHEVEEFAPK 85 (152)
Q Consensus 54 ~~~~I~~E~v~~LA~LArL~L~eeE~e~~~~~ 85 (152)
....|+.+++..+.+......+.+++..+...
T Consensus 13 ~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~ 44 (63)
T cd00051 13 GDGTISADELKAALKSLGEGLSEEEIDEMIRE 44 (63)
T ss_pred CCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 34579999999999988888888877665443
No 26
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=24.25 E-value=2.3e+02 Score=19.31 Aligned_cols=29 Identities=7% Similarity=0.266 Sum_probs=20.3
Q ss_pred CCChhHHHHHHHH---------cCCCCChhHHHHHHHH
Q 031809 57 SLEPPDVPRLAQT---------ARISLTPHEVEEFAPK 85 (152)
Q Consensus 57 ~I~~E~v~~LA~L---------ArL~L~eeE~e~~~~~ 85 (152)
.+|.+++..||.. -+|.|++.+++.+..+
T Consensus 4 ~~t~~~l~~ia~~iG~~Wk~Lar~LGls~~dI~~i~~~ 41 (86)
T cd08318 4 PVTGEQITVFANKLGEDWKTLAPHLEMKDKEIRAIESD 41 (86)
T ss_pred CCCHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHhc
Confidence 4566666655543 2799999999888865
No 27
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=23.00 E-value=1.1e+02 Score=19.63 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=22.7
Q ss_pred CChhHHHHHHHHcCCCCChhHHHHHHHH
Q 031809 58 LEPPDVPRLAQTARISLTPHEVEEFAPK 85 (152)
Q Consensus 58 I~~E~v~~LA~LArL~L~eeE~e~~~~~ 85 (152)
.+.+++-.||+-.=+.|+.+|+.....+
T Consensus 25 ~~~e~~~~lA~~~Gf~ft~~el~~~~~e 52 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEFTGEDLKEAGEE 52 (64)
T ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHhh
Confidence 4588999999999999999998765333
No 28
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=22.69 E-value=1.6e+02 Score=22.39 Aligned_cols=30 Identities=3% Similarity=0.146 Sum_probs=24.9
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHHHHHHH
Q 031809 64 PRLAQTARISLTPHEVEEFAPKIRQVIDWF 93 (152)
Q Consensus 64 ~~LA~LArL~L~eeE~e~~~~~l~~Il~~~ 93 (152)
..+.+++..+++|++.+.+...|+..|+-.
T Consensus 58 ~F~~Q~~~~~lte~q~e~lt~rF~~aL~~~ 87 (128)
T PRK13717 58 AFFDSASQKQLSEAQSKALSARFNTALEAS 87 (128)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 345667899999999999999999888754
No 29
>PF05397 Med15_fungi: Mediator complex subunit 15; InterPro: IPR008626 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family represents subunit 15 of the Mediator complex in fungi. It contains Saccharomyces cerevisiae GAL11 (Med15) protein. Gal11 (Med15) and Sin4 (Med16) proteins are S. cerevisiae global transcription factors that regulate transcription of a variety of genes, both positively and negatively. Gal11, in a major part, functions in the activation of transcription, whereas Sin4 has an opposite role [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=20.79 E-value=63 Score=23.67 Aligned_cols=31 Identities=13% Similarity=0.437 Sum_probs=23.7
Q ss_pred HcCCC--CChhHHHHHHHHHHHHHHHHHhhccC
Q 031809 69 TARIS--LTPHEVEEFAPKIRQVIDWFGQLQDV 99 (152)
Q Consensus 69 LArL~--L~eeE~e~~~~~l~~Il~~~d~L~ev 99 (152)
+.-+. ++++|...+.+.+.++-.++..+..+
T Consensus 22 l~~v~~~ls~eeK~~i~~~l~~~~~m~~~vd~l 54 (115)
T PF05397_consen 22 LSPVTNSLSPEEKAAIRQQLQEIQDMLARVDSL 54 (115)
T ss_pred CCcccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555 88999999998888888888776553
No 30
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=20.49 E-value=1.5e+02 Score=23.28 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=23.1
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhccC
Q 031809 71 RISLTPHEVEEFAPKIRQVIDWFGQLQDV 99 (152)
Q Consensus 71 rL~L~eeE~e~~~~~l~~Il~~~d~L~ev 99 (152)
.-.|+|+|.+++..+|.++-+-|..|.+|
T Consensus 23 ~~~LsEeE~eeLr~EL~KvEeEI~TLrqv 51 (162)
T PF04201_consen 23 EEGLSEEEREELRSELAKVEEEIQTLRQV 51 (162)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888888888888888888777766
No 31
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=20.46 E-value=1.5e+02 Score=19.79 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=25.1
Q ss_pred CCCChhHHHHHHHHcCCCCChhHHHHHHHH
Q 031809 56 SSLEPPDVPRLAQTARISLTPHEVEEFAPK 85 (152)
Q Consensus 56 ~~I~~E~v~~LA~LArL~L~eeE~e~~~~~ 85 (152)
..++.+++..+.+|+-+.++.+|+..+.+.
T Consensus 12 l~l~d~~m~~if~l~~~~vs~~el~a~lrk 41 (68)
T PF07308_consen 12 LDLKDDDMIEIFALAGFEVSKAELSAWLRK 41 (68)
T ss_pred HcCChHHHHHHHHHcCCccCHHHHHHHHCC
Confidence 457889999999999999999998777654
No 32
>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification]
Probab=20.17 E-value=3.4e+02 Score=22.88 Aligned_cols=43 Identities=9% Similarity=0.159 Sum_probs=32.7
Q ss_pred hHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhccCCCCC
Q 031809 61 PDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDS 103 (152)
Q Consensus 61 E~v~~LA~LArL~L~eeE~e~~~~~l~~Il~~~d~L~evDt~~ 103 (152)
.+++-+..+-.=+...+|+..+.++|..||..-+.|-+-+.++
T Consensus 10 ~QLqqVeaaL~~dP~NeEllkLe~DLkEvIsLTedLlqT~~ee 52 (262)
T KOG3026|consen 10 LQLQQVEAALQGDPENEELLKLEKDLKEVISLTEDLLQTQKEE 52 (262)
T ss_pred HHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3444455555567888999999999999999998887666544
Done!