BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031810
(152 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 60/105 (57%), Gaps = 14/105 (13%)
Query: 2 DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
DVN A + G TPLHLAA GHLE+++VLL+ GAD+DA G+TPLH AA
Sbjct: 39 DVNAA----DNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASD--VFGYTPLHLAAYWGH 92
Query: 62 KEAVRFLIENGAFLPDDIN--DSRFNPPLHYCPSLEWAYEEMMRF 104
E V L++NGA D+N DS PLH +W Y E++
Sbjct: 93 LEIVEVLLKNGA----DVNAMDSDGMTPLHLAA--KWGYLEIVEV 131
Score = 56.2 bits (134), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G TPLHLAA GHLE+++VLL+ GAD++A + G TPLH AAK E V L+++GA
Sbjct: 80 GYTPLHLAAYWGHLEIVEVLLKNGADVNAMD--SDGMTPLHLAAKWGYLEIVEVLLKHGA 137
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 30/34 (88%)
Query: 12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTK 45
S G+TPLHLAA+ G+LE+++VLL+ GAD++A+ K
Sbjct: 111 SDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDK 144
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 63/105 (60%), Gaps = 14/105 (13%)
Query: 2 DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
DVN + S G TPLH AA+ GH E++ +L+ +GAD++A K + G TPLH AAKE
Sbjct: 29 DVNAS----DSDGRTPLHYAAKEGHKEIVKLLISKGADVNA--KDSDGRTPLHYAAKEGH 82
Query: 62 KEAVRFLIENGAFLPDDIN--DSRFNPPLHYCPSLEWAYEEMMRF 104
KE V+ LI GA D+N DS PLHY + ++E+++
Sbjct: 83 KEIVKLLISKGA----DVNAKDSDGRTPLHYAA--KEGHKEIVKL 121
Score = 65.9 bits (159), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 56/93 (60%), Gaps = 6/93 (6%)
Query: 12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
S G TPLH AA+ GH E++ +L+ +GAD++A K + G TPLH AAKE KE V+ LI
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKLLISKGADVNA--KDSDGRTPLHYAAKEGHKEIVKLLISK 125
Query: 72 GAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRF 104
GA + + +DS PL E EE+++
Sbjct: 126 GADV--NTSDSDGRTPLDLAR--EHGNEEIVKL 154
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 10/86 (11%)
Query: 21 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 80
AA+ G+ + + L+E GAD++A + G TPLH AAKE KE V+ LI GA D+N
Sbjct: 11 AAENGNKDRVKDLIENGADVNASD--SDGRTPLHYAAKEGHKEIVKLLISKGA----DVN 64
Query: 81 --DSRFNPPLHYCPSLEWAYEEMMRF 104
DS PLHY + ++E+++
Sbjct: 65 AKDSDGRTPLHYAA--KEGHKEIVKL 88
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 14/105 (13%)
Query: 2 DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
DVN + S G TPLH AA+ GH EV+ +L+ +GAD++A K + G TPLH AA+
Sbjct: 29 DVNAS----DSDGRTPLHHAAENGHKEVVKLLISKGADVNA--KDSDGRTPLHHAAENGH 82
Query: 62 KEAVRFLIENGAFLPDDIN--DSRFNPPLHYCPSLEWAYEEMMRF 104
KE V+ LI GA D+N DS PLH+ E ++E+++
Sbjct: 83 KEVVKLLISKGA----DVNAKDSDGRTPLHHAA--ENGHKEVVKL 121
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 55/93 (59%), Gaps = 6/93 (6%)
Query: 12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
S G TPLH AA+ GH EV+ +L+ +GAD++A K + G TPLH AA+ KE V+ LI
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLISKGADVNA--KDSDGRTPLHHAAENGHKEVVKLLISK 125
Query: 72 GAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRF 104
GA + + +DS PL E EE+++
Sbjct: 126 GADV--NTSDSDGRTPLDLAR--EHGNEEVVKL 154
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
S G TPLH AA+ GH EV+ +L+ +GAD++ T + G TPL A + +E V+ L +
Sbjct: 101 SDGRTPLHHAAENGHKEVVKLLISKGADVN--TSDSDGRTPLDLAREHGNEEVVKLLEKQ 158
Query: 72 GAFL 75
G +L
Sbjct: 159 GGWL 162
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 10/86 (11%)
Query: 21 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 80
AA+ G+ + + L+E GAD++A + G TPLH AA+ KE V+ LI GA D+N
Sbjct: 11 AAENGNKDRVKDLIENGADVNASD--SDGRTPLHHAAENGHKEVVKLLISKGA----DVN 64
Query: 81 --DSRFNPPLHYCPSLEWAYEEMMRF 104
DS PLH+ E ++E+++
Sbjct: 65 AKDSDGRTPLHHAA--ENGHKEVVKL 88
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 50/80 (62%), Gaps = 8/80 (10%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G TPLHLAA+ GHLEV+ +LLE GAD++A+ K G TPLH AA+ E V+ L+E GA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN--GRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 74 FLPDDIN--DSRFNPPLHYC 91
D+N D PLH
Sbjct: 60 ----DVNAKDKNGRTPLHLA 75
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 50/80 (62%), Gaps = 8/80 (10%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G TPLHLAA+ GHLEV+ +LLE GAD++A+ K G TPLH AA+ E V+ L+E GA
Sbjct: 35 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN--GRTPLHLAARNGHLEVVKLLLEAGA 92
Query: 74 FLPDDIN--DSRFNPPLHYC 91
D+N D PLH
Sbjct: 93 ----DVNAKDKNGRTPLHLA 108
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 44/61 (72%), Gaps = 2/61 (3%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G TPLHLAA+ GHLEV+ +LLE GAD++A+ K G TPLH AA+ E V+ L+E GA
Sbjct: 68 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN--GRTPLHLAARNGHLEVVKLLLEAGA 125
Query: 74 F 74
+
Sbjct: 126 Y 126
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 50/80 (62%), Gaps = 8/80 (10%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G TPLHLAA+ GHLEV+ +LLE GAD++A+ K G TPLH AA+ E V+ L+E GA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN--GRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 74 FLPDDIN--DSRFNPPLHYC 91
D+N D PLH
Sbjct: 60 ----DVNAKDKNGRTPLHLA 75
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 44/61 (72%), Gaps = 2/61 (3%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G TPLHLAA+ GHLEV+ +LLE GAD++A+ K G TPLH AA+ E V+ L+E GA
Sbjct: 35 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN--GRTPLHLAARNGHLEVVKLLLEAGA 92
Query: 74 F 74
+
Sbjct: 93 Y 93
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 49/72 (68%), Gaps = 6/72 (8%)
Query: 2 DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
DVN + S G+TPLHLAA GHLE+++VLL+ GAD++A + GWTPLH AA +
Sbjct: 64 DVNAS----DSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDR--AGWTPLHLAALSGQ 117
Query: 62 KEAVRFLIENGA 73
E V L+++GA
Sbjct: 118 LEIVEVLLKHGA 129
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 52/92 (56%), Gaps = 12/92 (13%)
Query: 2 DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
DVN G+TPLHLAA G LE+++VLL+ GAD++A + G TPLH AA +
Sbjct: 31 DVNA----TDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD--SAGITPLHLAAYDGH 84
Query: 62 KEAVRFLIENGAFLPDDIN--DSRFNPPLHYC 91
E V L+++GA D+N D PLH
Sbjct: 85 LEIVEVLLKHGA----DVNAYDRAGWTPLHLA 112
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFL 68
G TPLHLAA G LE+++VLL+ GAD++A+ A G T + + +++ L
Sbjct: 105 GWTPLHLAALSGQLEIVEVLLKHGADVNAQD--ALGLTAFDISINQGQEDLAEIL 157
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 56/91 (61%), Gaps = 9/91 (9%)
Query: 4 NVAAWGPKSK-GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKK 62
N A K K G TPLHLAA+ GHLE+++VLL+ GAD++A+ K G+TPLH AA+E
Sbjct: 36 NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK--DGYTPLHLAAREGHL 93
Query: 63 EAVRFLIENGAFLPDDIN--DSRFNPPLHYC 91
E V L++ GA D+N D PLH
Sbjct: 94 EIVEVLLKAGA----DVNAKDKDGYTPLHLA 120
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 48/67 (71%), Gaps = 6/67 (8%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G TPLHLAA+ GHLE+++VLL+ GAD++A+ K G+TPLH AA+E E V L++ GA
Sbjct: 80 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDK--DGYTPLHLAAREGHLEIVEVLLKAGA 137
Query: 74 FLPDDIN 80
D+N
Sbjct: 138 ----DVN 140
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 28/32 (87%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTK 45
G TPLHLAA+ GHLE+++VLL+ GAD++A+ K
Sbjct: 113 GYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 144
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 8/73 (10%)
Query: 21 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 80
AA+ G + + +L+ GAD++A+ K G+TPLH AA+E E V L++ GA D+N
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDK--DGYTPLHLAAREGHLEIVEVLLKAGA----DVN 74
Query: 81 --DSRFNPPLHYC 91
D PLH
Sbjct: 75 AKDKDGYTPLHLA 87
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 56/91 (61%), Gaps = 9/91 (9%)
Query: 4 NVAAWGPKSK-GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKK 62
N A K K G TPLHLAA+ GHLE+++VLL+ GAD++A+ K G+TPLH AA+E
Sbjct: 24 NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK--DGYTPLHLAAREGHL 81
Query: 63 EAVRFLIENGAFLPDDIN--DSRFNPPLHYC 91
E V L++ GA D+N D PLH
Sbjct: 82 EIVEVLLKAGA----DVNAKDKDGYTPLHLA 108
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 48/67 (71%), Gaps = 6/67 (8%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G TPLHLAA+ GHLE+++VLL+ GAD++A+ K G+TPLH AA+E E V L++ GA
Sbjct: 68 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDK--DGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 74 FLPDDIN 80
D+N
Sbjct: 126 ----DVN 128
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTA 56
G TPLHLAA+ GHLE+++VLL+ GAD++A+ K G TP A
Sbjct: 101 GYTPLHLAAREGHLEIVEVLLKAGADVNAQDK--FGKTPFDLA 141
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 8/73 (10%)
Query: 21 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 80
AA+ G + + +L+ GAD++A+ K G+TPLH AA+E E V L++ GA D+N
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDK--DGYTPLHLAAREGHLEIVEVLLKAGA----DVN 62
Query: 81 --DSRFNPPLHYC 91
D PLH
Sbjct: 63 AKDKDGYTPLHLA 75
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 56/91 (61%), Gaps = 9/91 (9%)
Query: 4 NVAAWGPKSK-GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKK 62
N A K K G TPLHLAA+ GHLE+++VLL+ GAD++A+ K G+TPLH AA+E
Sbjct: 24 NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK--DGYTPLHLAAREGHL 81
Query: 63 EAVRFLIENGAFLPDDIN--DSRFNPPLHYC 91
E V L++ GA D+N D PLH
Sbjct: 82 EIVEVLLKAGA----DVNAKDKDGYTPLHLA 108
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 48/67 (71%), Gaps = 6/67 (8%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G TPLHLAA+ GHLE+++VLL+ GAD++A+ K G+TPLH AA+E E V L++ GA
Sbjct: 68 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD--GYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 74 FLPDDIN 80
D+N
Sbjct: 126 ----DVN 128
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFL 68
G TPLHLAA+ GHLE+++VLL+ GAD++A+ K G TP A +E ++ L
Sbjct: 101 GYTPLHLAAREGHLEIVEVLLKAGADVNAQDK--FGKTPFDLAIREGHEDIAEVL 153
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 8/73 (10%)
Query: 21 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 80
AA+ G + + +L+ GAD++A+ K G+TPLH AA+E E V L++ GA D+N
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKD--GYTPLHLAAREGHLEIVEVLLKAGA----DVN 62
Query: 81 --DSRFNPPLHYC 91
D PLH
Sbjct: 63 AKDKDGYTPLHLA 75
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 46/62 (74%), Gaps = 2/62 (3%)
Query: 12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
S GVTPLHLAA+ GHLE+++VLL+ GAD++A + G+TPLH AAK E V L++N
Sbjct: 78 SLGVTPLHLAARRGHLEIVEVLLKNGADVNASD--SHGFTPLHLAAKRGHLEIVEVLLKN 135
Query: 72 GA 73
GA
Sbjct: 136 GA 137
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 51/80 (63%), Gaps = 8/80 (10%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G TPLHLAA GHLE+++VLL+ GAD++A K + G TPLH AA+ E V L++NGA
Sbjct: 47 GWTPLHLAAHFGHLEIVEVLLKNGADVNA--KDSLGVTPLHLAARRGHLEIVEVLLKNGA 104
Query: 74 FLPDDIN--DSRFNPPLHYC 91
D+N DS PLH
Sbjct: 105 ----DVNASDSHGFTPLHLA 120
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 33/44 (75%), Gaps = 4/44 (9%)
Query: 2 DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTK 45
DVN + S G TPLHLAA+ GHLE+++VLL+ GAD++A+ K
Sbjct: 105 DVNAS----DSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDK 144
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Query: 21 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 80
AA+ G + + +L+ GAD++AR GWTPLH AA E V L++NGA D+N
Sbjct: 21 AARAGQDDEVRILMANGADVNARD--FTGWTPLHLAAHFGHLEIVEVLLKNGA----DVN 74
Query: 81 --DSRFNPPLHYC 91
DS PLH
Sbjct: 75 AKDSLGVTPLHLA 87
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 10/103 (9%)
Query: 2 DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
DVN + S G TPLHLAA+ GH EV+ +LL +GAD +A K + G TPLH AA+
Sbjct: 29 DVNAS----DSDGKTPLHLAAENGHKEVVKLLLSQGADPNA--KDSDGKTPLHLAAENGH 82
Query: 62 KEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRF 104
KE V+ L+ GA + DS PLH E ++E+++
Sbjct: 83 KEVVKLLLSQGA--DPNAKDSDGKTPLHLAA--ENGHKEVVKL 121
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 54/93 (58%), Gaps = 6/93 (6%)
Query: 12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
S G TPLHLAA+ GH EV+ +LL +GAD +A K + G TPLH AA+ KE V+ L+
Sbjct: 68 SDGKTPLHLAAENGHKEVVKLLLSQGADPNA--KDSDGKTPLHLAAENGHKEVVKLLLSQ 125
Query: 72 GAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRF 104
GA + +DS PL E EE+++
Sbjct: 126 GA--DPNTSDSDGRTPLDLA--REHGNEEVVKL 154
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
S G TPLHLAA+ GH EV+ +LL +GA D T + G TPL A + +E V+ L +
Sbjct: 101 SDGKTPLHLAAENGHKEVVKLLLSQGA--DPNTSDSDGRTPLDLAREHGNEEVVKLLEKQ 158
Query: 72 GAFL 75
G +L
Sbjct: 159 GGWL 162
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 21 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 80
AA+ G+ + + LLE GAD++A + G TPLH AA+ KE V+ L+ GA +
Sbjct: 11 AAENGNKDRVKDLLENGADVNASD--SDGKTPLHLAAENGHKEVVKLLLSQGA--DPNAK 66
Query: 81 DSRFNPPLHYCPSLEWAYEEMMRF 104
DS PLH E ++E+++
Sbjct: 67 DSDGKTPLHLAA--ENGHKEVVKL 88
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 51/90 (56%), Gaps = 12/90 (13%)
Query: 2 DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
DVN W G+TPLHL GHLE+++VLL+ AD++A K GWTPLH AA
Sbjct: 39 DVNANDW----FGITPLHLVVNNGHLEIIEVLLKYAADVNASDK--SGWTPLHLAAYRGH 92
Query: 62 KEAVRFLIENGAFLPDDIN--DSRFNPPLH 89
E V L++ GA D+N D + PLH
Sbjct: 93 LEIVEVLLKYGA----DVNAMDYQGYTPLH 118
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 6/72 (8%)
Query: 2 DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
DVN + G TPLHLAA GHLE+++VLL+ GAD++A G+TPLH AA++
Sbjct: 72 DVNAS----DKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDY--QGYTPLHLAAEDGH 125
Query: 62 KEAVRFLIENGA 73
E V L++ GA
Sbjct: 126 LEIVEVLLKYGA 137
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 33/44 (75%), Gaps = 4/44 (9%)
Query: 2 DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTK 45
DVN + +G TPLHLAA+ GHLE+++VLL+ GAD++A+ K
Sbjct: 105 DVNAMDY----QGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDK 144
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 55/93 (59%), Gaps = 6/93 (6%)
Query: 12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
S G TPLH AA+ GH E++ +LL +GAD +A K + G TPLH AA+ KE V+ L+
Sbjct: 35 SDGRTPLHYAAENGHKEIVKLLLSKGADPNA--KDSDGRTPLHYAAENGHKEIVKLLLSK 92
Query: 72 GAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRF 104
GA + DS PLHY E ++E+++
Sbjct: 93 GA--DPNAKDSDGRTPLHYA--AENGHKEIVKL 121
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
S G TPLH AA+ GH E++ +LL +GAD +A K + G TPLH AA+ KE V+ L+
Sbjct: 68 SDGRTPLHYAAENGHKEIVKLLLSKGADPNA--KDSDGRTPLHYAAENGHKEIVKLLLSK 125
Query: 72 GAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRF 104
GA + +DS PL E EE+++
Sbjct: 126 GA--DPNTSDSDGRTPLDLA--REHGNEEIVKL 154
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
S G TPLH AA+ GH E++ +LL +GA D T + G TPL A + +E V+ L +
Sbjct: 101 SDGRTPLHYAAENGHKEIVKLLLSKGA--DPNTSDSDGRTPLDLAREHGNEEIVKLLEKQ 158
Query: 72 GAFL 75
G +L
Sbjct: 159 GGWL 162
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 21 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 80
AA+ G+ + + LLE GAD +A + G TPLH AA+ KE V+ L+ GA +
Sbjct: 11 AAENGNKDRVKDLLENGADPNASD--SDGRTPLHYAAENGHKEIVKLLLSKGA--DPNAK 66
Query: 81 DSRFNPPLHYCPSLEWAYEEMMRF 104
DS PLHY E ++E+++
Sbjct: 67 DSDGRTPLHYA--AENGHKEIVKL 88
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 62.8 bits (151), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 50/80 (62%), Gaps = 8/80 (10%)
Query: 12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
+ G+TPLHLAA GHLE+++VLL+ GAD+DA G+TPLH AA E V L++
Sbjct: 45 NTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD--VYGFTPLHLAAMTGHLEIVEVLLKY 102
Query: 72 GAFLPDDIN--DSRFNPPLH 89
GA D+N D + PLH
Sbjct: 103 GA----DVNAFDMTGSTPLH 118
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G TPLHLAA GHLE+++VLL+ GAD++A G TPLH AA E E V L++ GA
Sbjct: 80 GFTPLHLAAMTGHLEIVEVLLKYGADVNAFDM--TGSTPLHLAADEGHLEIVEVLLKYGA 137
Query: 74 FLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQR 106
D+N + S++ E++ + R
Sbjct: 138 ----DVNAQDKFGKTAFDISIDNGNEDLAKSCR 166
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 62.8 bits (151), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G TPLHLAA GHLE+++VLL+ GAD++A + G TPLH AA E V L++NGA
Sbjct: 47 GWTPLHLAAYFGHLEIVEVLLKNGADVNADD--SLGVTPLHLAADRGHLEVVEVLLKNGA 104
Query: 74 FLPDDINDSRFNPPLHYCPSL 94
+ + ND PLH ++
Sbjct: 105 DV--NANDHNGFTPLHLAANI 123
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 43/62 (69%), Gaps = 2/62 (3%)
Query: 12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
S GVTPLHLAA GHLEV++VLL+ GAD++A G+TPLH AA E V L+++
Sbjct: 78 SLGVTPLHLAADRGHLEVVEVLLKNGADVNANDH--NGFTPLHLAANIGHLEIVEVLLKH 135
Query: 72 GA 73
GA
Sbjct: 136 GA 137
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 27/33 (81%)
Query: 13 KGVTPLHLAAQGGHLEVMDVLLERGADIDARTK 45
G TPLHLAA GHLE+++VLL+ GAD++A+ K
Sbjct: 112 NGFTPLHLAANIGHLEIVEVLLKHGADVNAQDK 144
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 21 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 80
AA+ G + + +L+ GAD++A GWTPLH AA E V L++NGA + D
Sbjct: 21 AARAGQDDEVRILMANGADVNASDH--VGWTPLHLAAYFGHLEIVEVLLKNGADVNAD-- 76
Query: 81 DSRFNPPLHYC 91
DS PLH
Sbjct: 77 DSLGVTPLHLA 87
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 62.4 bits (150), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 8/82 (9%)
Query: 12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
+ G TPLHLAA GHLE+++VLL+ GAD++A G TPLH AA E V L+++
Sbjct: 45 NDGYTPLHLAASNGHLEIVEVLLKNGADVNASD--LTGITPLHLAAATGHLEIVEVLLKH 102
Query: 72 GAFLPDDIN--DSRFNPPLHYC 91
GA D+N D+ + PLH
Sbjct: 103 GA----DVNAYDNDGHTPLHLA 120
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G+TPLHLAA GHLE+++VLL+ GAD++A G TPLH AAK E V L+++GA
Sbjct: 80 GITPLHLAAATGHLEIVEVLLKHGADVNAYDN--DGHTPLHLAAKYGHLEIVEVLLKHGA 137
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 29/34 (85%)
Query: 12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTK 45
+ G TPLHLAA+ GHLE+++VLL+ GAD++A+ K
Sbjct: 111 NDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDK 144
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 49/80 (61%), Gaps = 8/80 (10%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G TPLHLAA GHLE+++VLL+ GAD++A K G TPLH AA E V L++NGA
Sbjct: 47 GKTPLHLAAIKGHLEIVEVLLKHGADVNAADK--MGDTPLHLAALYGHLEIVEVLLKNGA 104
Query: 74 FLPDDIN--DSRFNPPLHYC 91
D+N D+ PLH
Sbjct: 105 ----DVNATDTYGFTPLHLA 120
Score = 56.2 bits (134), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
Query: 2 DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
DVN A G TPLHLAA GHLE+++VLL+ GAD++A G+TPLH AA
Sbjct: 72 DVNAA----DKMGDTPLHLAALYGHLEIVEVLLKNGADVNATD--TYGFTPLHLAADAGH 125
Query: 62 KEAVRFLIENGA 73
E V L++ GA
Sbjct: 126 LEIVEVLLKYGA 137
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 27/32 (84%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTK 45
G TPLHLAA GHLE+++VLL+ GAD++A+ K
Sbjct: 113 GFTPLHLAADAGHLEIVEVLLKYGADVNAQDK 144
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 21 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 80
AA+ G + + +L+ GAD++A G TPLH AA + E V L+++GA D+N
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDD--SGKTPLHLAAIKGHLEIVEVLLKHGA----DVN 74
Query: 81 --DSRFNPPLHYC 91
D + PLH
Sbjct: 75 AADKMGDTPLHLA 87
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 50/80 (62%), Gaps = 8/80 (10%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G TPLHLAA+ GHLE+++VLL+ GAD++A G TPLH AAK E V L++ GA
Sbjct: 47 GDTPLHLAARVGHLEIVEVLLKNGADVNALD--FSGSTPLHLAAKRGHLEIVEVLLKYGA 104
Query: 74 FLPDDIN--DSRFNPPLHYC 91
D+N D+ + PLH
Sbjct: 105 ----DVNADDTIGSTPLHLA 120
Score = 56.2 bits (134), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G TPLHLAA+ GHLE+++VLL+ GAD++A G TPLH AA E V L++ GA
Sbjct: 80 GSTPLHLAAKRGHLEIVEVLLKYGADVNADD--TIGSTPLHLAADTGHLEIVEVLLKYGA 137
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 27/32 (84%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTK 45
G TPLHLAA GHLE+++VLL+ GAD++A+ K
Sbjct: 113 GSTPLHLAADTGHLEIVEVLLKYGADVNAQDK 144
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 21 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 80
AA+ G + + +L+ GAD++A G TPLH AA+ E V L++NGA D+N
Sbjct: 21 AARAGQDDEVRILMANGADVNAED--TYGDTPLHLAARVGHLEIVEVLLKNGA----DVN 74
Query: 81 DSRF--NPPLHYC 91
F + PLH
Sbjct: 75 ALDFSGSTPLHLA 87
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 4 NVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKE 63
+V AW + G TPLHLAA GHLE+++VLL+ GAD++A K G+TPLH AA + E
Sbjct: 72 DVNAW--DNYGATPLHLAADNGHLEIVEVLLKHGADVNA--KDYEGFTPLHLAAYDGHLE 127
Query: 64 AVRFLIENGA 73
V L++ GA
Sbjct: 128 IVEVLLKYGA 137
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 52/92 (56%), Gaps = 12/92 (13%)
Query: 2 DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
DVN W G TPLHLAA+ GHLE+++VLL+ GAD++A G TPLH AA
Sbjct: 39 DVNATDW----LGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDN--YGATPLHLAADNGH 92
Query: 62 KEAVRFLIENGAFLPDDINDSRFN--PPLHYC 91
E V L+++GA D+N + PLH
Sbjct: 93 LEIVEVLLKHGA----DVNAKDYEGFTPLHLA 120
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 32/44 (72%), Gaps = 4/44 (9%)
Query: 2 DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTK 45
DVN + +G TPLHLAA GHLE+++VLL+ GAD++A+ K
Sbjct: 105 DVNAKDY----EGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDK 144
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
GVTPLHLAA+ GHLE+++VLL+ GAD++AR G TPLH AA E V L+E GA
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNARD--IWGRTPLHLAATVGHLEIVEVLLEYGA 104
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 27/32 (84%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTK 45
G TPLHLAA GHLE+++VLLE GAD++A+ K
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYGADVNAQDK 111
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 21 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 80
A + G + + +L+ GAD++A G TPLH AAK E V L+++GA D+N
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDD--AGVTPLHLAAKRGHLEIVEVLLKHGA----DVN 74
Query: 81 --DSRFNPPLHYCPSL 94
D PLH ++
Sbjct: 75 ARDIWGRTPLHLAATV 90
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 49/82 (59%), Gaps = 8/82 (9%)
Query: 12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
+G TPLHLAA GH E+++VLL+ GAD++AR GWTPLH AA E V L++
Sbjct: 45 DQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD--TDGWTPLHLAADNGHLEIVEVLLKY 102
Query: 72 GAFLPDDIN--DSRFNPPLHYC 91
GA D+N D+ PLH
Sbjct: 103 GA----DVNAQDAYGLTPLHLA 120
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 43/62 (69%), Gaps = 2/62 (3%)
Query: 12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
+ G TPLHLAA GHLE+++VLL+ GAD++A+ A G TPLH AA E V L+++
Sbjct: 78 TDGWTPLHLAADNGHLEIVEVLLKYGADVNAQD--AYGLTPLHLAADRGHLEIVEVLLKH 135
Query: 72 GA 73
GA
Sbjct: 136 GA 137
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 28/32 (87%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTK 45
G+TPLHLAA GHLE+++VLL+ GAD++A+ K
Sbjct: 113 GLTPLHLAADRGHLEIVEVLLKHGADVNAQDK 144
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 53/97 (54%), Gaps = 7/97 (7%)
Query: 8 WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRF 67
WG K G TPLH AA+ GH E + LL +GAD++AR+K G TPLH AAK E V+
Sbjct: 4 WGSKD-GNTPLHNAAKNGHAEEVKKLLSKGADVNARSK--DGNTPLHLAAKNGHAEIVKL 60
Query: 68 LIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRF 104
L+ GA + D N P H + + E+++
Sbjct: 61 LLAKGADVNARSKDG--NTPEHLAK--KNGHHEIVKL 93
Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 6/67 (8%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G TPLHLAA+ GH E++ +LL +GAD++AR+K G TP H A K E V+ L GA
Sbjct: 42 GNTPLHLAAKNGHAEIVKLLLAKGADVNARSK--DGNTPEHLAKKNGHHEIVKLLDAKGA 99
Query: 74 FLPDDIN 80
D+N
Sbjct: 100 ----DVN 102
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 59.3 bits (142), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G+TPLHLAAQ GHLE+++VLL+ GAD++A G TPLH AA E V L+++GA
Sbjct: 47 GLTPLHLAAQLGHLEIVEVLLKYGADVNAEDN--FGITPLHLAAIRGHLEIVEVLLKHGA 104
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 28/32 (87%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTK 45
G+TPLHLAA GHLE+++VLL+ GAD++A+ K
Sbjct: 80 GITPLHLAAIRGHLEIVEVLLKHGADVNAQDK 111
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
GVTPLHLAA+ GHLE+++VLL+ GAD++A + G TPLH AA E V L+E GA
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNASD--SWGRTPLHLAATVGHLEIVEVLLEYGA 104
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 33/45 (73%), Gaps = 6/45 (13%)
Query: 2 DVNVA-AWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTK 45
DVN + +WG TPLHLAA GHLE+++VLLE GAD++A+ K
Sbjct: 72 DVNASDSWGR-----TPLHLAATVGHLEIVEVLLEYGADVNAQDK 111
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 21 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 80
A + G + + +L+ GAD++A G TPLH AAK E V L+++GA D+N
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDD--AGVTPLHLAAKRGHLEIVEVLLKHGA----DVN 74
Query: 81 --DSRFNPPLHYCPSL 94
DS PLH ++
Sbjct: 75 ASDSWGRTPLHLAATV 90
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 51/82 (62%), Gaps = 8/82 (9%)
Query: 12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
+ G+TPLHLAA GHLE+++VLL+ GAD++A G TPLH AA E V L+++
Sbjct: 45 ASGLTPLHLAATYGHLEIVEVLLKHGADVNAID--IMGSTPLHLAALIGHLEIVEVLLKH 102
Query: 72 GAFLPDDIN--DSRFNPPLHYC 91
GA D+N D+ + PLH
Sbjct: 103 GA----DVNAVDTWGDTPLHLA 120
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G TPLHLAA GHLE+++VLL+ GAD++A G TPLH AA E V L+++GA
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLKHGADVNAVDT--WGDTPLHLAAIMGHLEIVEVLLKHGA 137
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 32/45 (71%), Gaps = 6/45 (13%)
Query: 2 DVN-VAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTK 45
DVN V WG TPLHLAA GHLE+++VLL+ GAD++A+ K
Sbjct: 105 DVNAVDTWGD-----TPLHLAAIMGHLEIVEVLLKHGADVNAQDK 144
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 21 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 80
AA+ G + + +L+ GAD++A A G TPLH AA E V L+++GA D+N
Sbjct: 21 AARAGQDDEVRILMANGADVNATD--ASGLTPLHLAATYGHLEIVEVLLKHGA----DVN 74
Query: 81 --DSRFNPPLHYC 91
D + PLH
Sbjct: 75 AIDIMGSTPLHLA 87
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 51/82 (62%), Gaps = 8/82 (9%)
Query: 12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
+ G+TPLHLAA GHLE+++VLL+ GAD++A G TPLH AA E V L+++
Sbjct: 45 ASGLTPLHLAATYGHLEIVEVLLKHGADVNAID--IXGSTPLHLAALIGHLEIVEVLLKH 102
Query: 72 GAFLPDDIN--DSRFNPPLHYC 91
GA D+N D+ + PLH
Sbjct: 103 GA----DVNAVDTWGDTPLHLA 120
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G TPLHLAA GHLE+++VLL+ GAD++A G TPLH AA E V L+++GA
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLKHGADVNAVD--TWGDTPLHLAAIMGHLEIVEVLLKHGA 137
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 32/45 (71%), Gaps = 6/45 (13%)
Query: 2 DVN-VAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTK 45
DVN V WG TPLHLAA GHLE+++VLL+ GAD++A+ K
Sbjct: 105 DVNAVDTWGD-----TPLHLAAIMGHLEIVEVLLKHGADVNAQDK 144
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 21 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 80
AA+ G + + +L+ GAD++A A G TPLH AA E V L+++GA D+N
Sbjct: 21 AARAGQDDEVRILMANGADVNATD--ASGLTPLHLAATYGHLEIVEVLLKHGA----DVN 74
Query: 81 --DSRFNPPLHYC 91
D + PLH
Sbjct: 75 AIDIXGSTPLHLA 87
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 48/82 (58%), Gaps = 8/82 (9%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G TPLHLAA GHLE+++VLL+ GAD++A G TPLH AA E V L++NGA
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLKNGADVNAYD--TLGSTPLHLAAHFGHLEIVEVLLKNGA 104
Query: 74 FLPDDIN--DSRFNPPLHYCPS 93
D+N D PLH +
Sbjct: 105 ----DVNAKDDNGITPLHLAAN 122
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G TPLHLAA GHLE+++VLL+ GAD++A+ G TPLH AA E V L++ GA
Sbjct: 80 GSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDN--GITPLHLAANRGHLEIVEVLLKYGA 137
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 28/33 (84%)
Query: 13 KGVTPLHLAAQGGHLEVMDVLLERGADIDARTK 45
G+TPLHLAA GHLE+++VLL+ GAD++A+ K
Sbjct: 112 NGITPLHLAANRGHLEIVEVLLKYGADVNAQDK 144
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Query: 21 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 80
AA+ G + + +L+ GAD++A GWTPLH AA E V L++NGA D+N
Sbjct: 21 AARAGRDDEVRILMANGADVNAAD--VVGWTPLHLAAYWGHLEIVEVLLKNGA----DVN 74
Query: 81 --DSRFNPPLHYC 91
D+ + PLH
Sbjct: 75 AYDTLGSTPLHLA 87
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
GVTPLHLAA+ GHLE+++VLL+ GAD++A G TPLH AA E V L+E GA
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNASD--IWGRTPLHLAATVGHLEIVEVLLEYGA 104
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 27/32 (84%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTK 45
G TPLHLAA GHLE+++VLLE GAD++A+ K
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYGADVNAQDK 111
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 21 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 80
A + G + + +L+ GAD++A G TPLH AAK E V L+++GA D+N
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDD--AGVTPLHLAAKRGHLEIVEVLLKHGA----DVN 74
Query: 81 DSRF--NPPLHYCPSL 94
S PLH ++
Sbjct: 75 ASDIWGRTPLHLAATV 90
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 47/73 (64%), Gaps = 7/73 (9%)
Query: 8 WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRF 67
G KS G+TPLHL AQ GH+ V DVL++ G +DA T+ G+TPLH A+ + V+F
Sbjct: 273 LGNKS-GLTPLHLVAQEGHVPVADVLIKHGVMVDATTR--MGYTPLHVASHYGNIKLVKF 329
Query: 68 LIENGAFLPDDIN 80
L+++ A D+N
Sbjct: 330 LLQHQA----DVN 338
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 49/73 (67%), Gaps = 3/73 (4%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G TPLH+A+ G+++++ LL+ AD++A+TK G++PLH AA++ + V L++NGA
Sbjct: 311 GYTPLHVASHYGNIKLVKFLLQHQADVNAKTK--LGYSPLHQAAQQGHTDIVTLLLKNGA 368
Query: 74 FLPDDINDSRFNP 86
P++++ P
Sbjct: 369 S-PNEVSSDGTTP 380
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 13 KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
+GVTPLHLAAQ GH E++ +LL + A+ + K G TPLH A+E LI++G
Sbjct: 244 QGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK--SGLTPLHLVAQEGHVPVADVLIKHG 301
Query: 73 AFLPDDINDSRFNPPLHYC 91
+ D PLH
Sbjct: 302 VMV--DATTRMGYTPLHVA 318
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 16 TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
TPLH+AA+ GH EV LL+ A ++A+ K TPLH AA+ V+ L+EN A
Sbjct: 49 TPLHMAARAGHTEVAKYLLQNKAKVNAKAKD--DQTPLHCAARIGHTNMVKLLLENNA 104
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
+ G TPLH+AA+ GH+E + LLE+ A TK G+TPLH AAK K L+E
Sbjct: 111 TAGHTPLHIAAREGHVETVLALLEKEASQACMTKK--GFTPLHVAAKYGKVRVAELLLER 168
Query: 72 GAFLPDDINDSRFNP 86
A P+ + P
Sbjct: 169 DAH-PNAAGKNGLTP 182
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 13 KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
KG TPLH+AA+ G + V ++LLER A +A G G TPLH A + V+ L+ G
Sbjct: 145 KGFTPLHVAAKYGKVRVAELLLERDAHPNA--AGKNGLTPLHVAVHHNNLDIVKLLLPRG 202
Query: 73 A 73
Sbjct: 203 G 203
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 15 VTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAF 74
+TPLH+A+ GHL ++ LL+RGA + TPLH AA+ E ++L++N A
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKV--ETPLHMAARAGHTEVAKYLLQNKAK 72
Query: 75 LPDDINDSRFNPPLH 89
+ D + PLH
Sbjct: 73 VNAKAKDDQT--PLH 85
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 16 TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
TPLH AA+ GH ++ +LLE A+ + T G TPLH AA+E E V L+E A
Sbjct: 82 TPLHCAARIGHTNMVKLLLENNANPNLAT--TAGHTPLHIAAREGHVETVLALLEKEA 137
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLI 69
P G TPLH+AA+ +EV LL+ G +A + G TPLH AA+E E V L+
Sbjct: 208 PAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAES--VQGVTPLHLAAQEGHAEMVALLL 265
Query: 70 ENGA 73
A
Sbjct: 266 SKQA 269
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 48/80 (60%), Gaps = 4/80 (5%)
Query: 12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
+ G TPLHLAA GHLE+++VLL+ GAD++A G TPL AA E V L++N
Sbjct: 45 ASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDH--AGMTPLRLAALFGHLEIVEVLLKN 102
Query: 72 GAFLPDDINDSRFNPPLHYC 91
GA + + ND + PLH
Sbjct: 103 GADV--NANDMEGHTPLHLA 120
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G+TPL LAA GHLE+++VLL+ GAD++A G TPLH AA E V L++NGA
Sbjct: 80 GMTPLRLAALFGHLEIVEVLLKNGADVNANDM--EGHTPLHLAAMFGHLEIVEVLLKNGA 137
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 28/33 (84%)
Query: 13 KGVTPLHLAAQGGHLEVMDVLLERGADIDARTK 45
+G TPLHLAA GHLE+++VLL+ GAD++A+ K
Sbjct: 112 EGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDK 144
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 21 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
AA+ G + + +L+ GAD++A A GWTPLH AA E V L++NGA
Sbjct: 21 AARAGRDDEVRILMANGADVNAED--ASGWTPLHLAAFNGHLEIVEVLLKNGA 71
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 43/62 (69%), Gaps = 2/62 (3%)
Query: 12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
+ G TPLHLAA GHLE+++VLL+ GAD++A K A G TPL+ AA E V L+++
Sbjct: 66 TNGTTPLHLAASLGHLEIVEVLLKYGADVNA--KDATGITPLYLAAYWGHLEIVEVLLKH 123
Query: 72 GA 73
GA
Sbjct: 124 GA 125
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 10/93 (10%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G TPLH+AA GHLE+++VLL GAD++A G TPLH AA E V L++ GA
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTN--GTTPLHLAASLGHLEIVEVLLKYGA 92
Query: 74 FLPDDIN--DSRFNPPLHYCPSLEWAYEEMMRF 104
D+N D+ PL+ W + E++
Sbjct: 93 ----DVNAKDATGITPLYLAAY--WGHLEIVEV 119
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 29/34 (85%)
Query: 12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTK 45
+ G+TPL+LAA GHLE+++VLL+ GAD++A+ K
Sbjct: 99 ATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDK 132
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 21 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 80
AA+ G + + +L+ GAD +A G TPLH AA E V L+ NGA D+N
Sbjct: 9 AARAGQDDEVRILMANGADANAYDH--YGRTPLHMAAAVGHLEIVEVLLRNGA----DVN 62
Query: 81 --DSRFNPPLHYCPSL 94
D+ PLH SL
Sbjct: 63 AVDTNGTTPLHLAASL 78
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G TPLHLAA GHLE+++VLL+ GAD++A G G TPLH AA E V L+++GA
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGADVNA--TGNTGRTPLHLAAWADHLEIVEVLLKHGA 104
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 4/44 (9%)
Query: 2 DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTK 45
DVN + G TPLHLAA HLE+++VLL+ GAD++A+ K
Sbjct: 72 DVNATG----NTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDK 111
Score = 34.3 bits (77), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 21 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 80
AA+ G + + +L GAD++A G TPLH AA E V L++NGA + N
Sbjct: 21 AARAGQDDEVRILTANGADVNANDY--WGHTPLHLAAMLGHLEIVEVLLKNGADVNATGN 78
Query: 81 DSRFNPPLHYCPSLEWA 97
R PLH WA
Sbjct: 79 TGR--TPLHLAA---WA 90
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLI 69
P +G+T LH A GH E++ L++ G +++A GWTPLH AA + +FL+
Sbjct: 66 PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSD--GWTPLHCAASCNNVQVCKFLV 123
Query: 70 ENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRF 104
E+GA + + S C +E Y + +F
Sbjct: 124 ESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQF 157
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G+TPLHLAA HLE+++VLL+ GAD++A A G TPLH A E V L+++GA
Sbjct: 47 GLTPLHLAAMNDHLEIVEVLLKNGADVNAID--AIGETPLHLVAMYGHLEIVEVLLKHGA 104
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 26/32 (81%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTK 45
G TPLHL A GHLE+++VLL+ GAD++A+ K
Sbjct: 80 GETPLHLVAMYGHLEIVEVLLKHGADVNAQDK 111
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 21 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 80
AA+ G + + +L+ GAD++A K G TPLH AA E V L++NGA D+N
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDK--VGLTPLHLAAMNDHLEIVEVLLKNGA----DVN 74
Query: 81 --DSRFNPPLHYCP 92
D+ PLH
Sbjct: 75 AIDAIGETPLHLVA 88
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLI 69
P +G+T LH A GH E++ L++ G +++A GWTPLH AA + +FL+
Sbjct: 66 PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSD--GWTPLHCAASCNNVQVCKFLV 123
Query: 70 ENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRF 104
E+GA + + S C +E Y + +F
Sbjct: 124 ESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQF 157
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G +PLHLAAQ GH +VLL G DARTK TPLH AA E V L+++GA
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK--VDRTPLHMAASEGHANIVEVLLKHGA 91
Query: 74 FLPDDINDSRFNPPLHYCPSLEWAYE 99
D+N + +L WA E
Sbjct: 92 ----DVN----AKDMLKMTALHWATE 109
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 16 TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
TPLH+AA GH +++VLL+ GAD++A K T LH A + +E V LI+ GA
Sbjct: 69 TPLHMAASEGHANIVEVLLKHGADVNA--KDMLKMTALHWATEHNHQEVVELLIKYGA 124
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 15 VTPLHLAAQGGHLEVMDVLLERGADIDARTK 45
+T LH A + H EV+++L++ GAD+ ++K
Sbjct: 101 MTALHWATEHNHQEVVELLIKYGADVHTQSK 131
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G+TPL+LA GHLE+++VLL+ GAD++A A G+TPLH AA E L+++GA
Sbjct: 47 GLTPLYLATAHGHLEIVEVLLKNGADVNAVD--AIGFTPLHLAAFIGHLEIAEVLLKHGA 104
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 26/32 (81%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTK 45
G TPLHLAA GHLE+ +VLL+ GAD++A+ K
Sbjct: 80 GFTPLHLAAFIGHLEIAEVLLKHGADVNAQDK 111
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 11/82 (13%)
Query: 21 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 80
AA+ G + + +L+ GAD++A+ + G TPL+ A E V L++NGA D+N
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDE--YGLTPLYLATAHGHLEIVEVLLKNGA----DVN 74
Query: 81 --DSRFNPPLH---YCPSLEWA 97
D+ PLH + LE A
Sbjct: 75 AVDAIGFTPLHLAAFIGHLEIA 96
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Query: 13 KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
KG TPLHLAA HLE+++VLL+ GAD++A G TPLH AA E V L+++G
Sbjct: 46 KGNTPLHLAADYDHLEIVEVLLKHGADVNAHDND--GSTPLHLAALFGHLEIVEVLLKHG 103
Query: 73 A 73
A
Sbjct: 104 A 104
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 28/34 (82%)
Query: 12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTK 45
+ G TPLHLAA GHLE+++VLL+ GAD++A+ K
Sbjct: 78 NDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDK 111
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Query: 21 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 80
AA+ G + + +L+ GAD++A + G TPLH AA E V L+++GA D+N
Sbjct: 21 AARAGQDDEVRILMANGADVNANDR--KGNTPLHLAADYDHLEIVEVLLKHGA----DVN 74
Query: 81 --DSRFNPPLHYC 91
D+ + PLH
Sbjct: 75 AHDNDGSTPLHLA 87
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
G T LH+AA G+ EV+ +L++ A D K GWTPLH AA K+EA R L+EN
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQ--ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN 254
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 21 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 80
A G E + LLERGADI+ G T LH A + + V+FL+ENGA + N
Sbjct: 47 ACSSGDTEEVLRLLERGADIN--YANVDGLTALHQACIDDNVDMVKFLVENGANINQPDN 104
Query: 81 DSRFNPPLHYCPS 93
+ PLH S
Sbjct: 105 EGWI--PLHAAAS 115
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G+T LH A +++++ L+E GA+I+ GW PLH AA + +LI GA
Sbjct: 73 GLTALHQACIDDNVDMVKFLVENGANINQPDNE--GWIPLHAAASCGYLDIAEYLISQGA 130
Query: 74 FL 75
+
Sbjct: 131 HV 132
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPL 53
P ++G PLH AA G+L++ + L+ +GA + A + G TPL
Sbjct: 102 PDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVN--SEGDTPL 143
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 2 DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTA 56
DVN+ + G TPLH AA G E +L+E D++A K G T A
Sbjct: 224 DVNIKDY----DGWTPLHAAAHWGKEEACRILVENLCDMEAVNK--VGQTAFDVA 272
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 4/74 (5%)
Query: 16 TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL 75
+PLH AA+ GH+++ +L++ GA+ID ++ TPL AA+ EAV++LI+ GA +
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQ--RTPLMEAAENNHLEAVKYLIKAGALV 70
Query: 76 PDDINDSRFNPPLH 89
D D+ + LH
Sbjct: 71 --DPKDAEGSTCLH 82
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 6/83 (7%)
Query: 10 PK-SKGVTPLHLAAQGGHLEVMDVLLERGA-DIDARTKGACGWTPLHTAAKERKKEAVRF 67
PK ++G T LHLAA+ GH EV+ LL G D++ + G GWTP+ A + + + V+
Sbjct: 72 PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDG--GWTPMIWATEYKHVDLVKL 129
Query: 68 LIENGAFLPDDINDSRFNPPLHY 90
L+ G+ + +I D+ N LH+
Sbjct: 130 LLSKGSDI--NIRDNEENICLHW 150
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 16 TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL 75
TPL AA+ HLE + L++ GA +D K A G T LH AAK+ E V++L+ NG
Sbjct: 46 TPLMEAAENNHLEAVKYLIKAGALVD--PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD 103
Query: 76 PDDINDSRFNPPL 88
+ +D + P +
Sbjct: 104 VNCQDDGGWTPMI 116
Score = 30.0 bits (66), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 18 LHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPD 77
LH AA G +++ ++LL D+ A G +PLH AA+E + + V + + +
Sbjct: 148 LHWAAFSGCVDIAEILLAAKCDLHAVNIH--GDSPLHIAARENRYDCVVLFLSRDSDVT- 204
Query: 78 DINDSRFNPPLHYCPSLE---WAYEEMMRFQRES 108
+ + PL C SL W+ +M + ++S
Sbjct: 205 -LKNKEGETPLQ-CASLNSQVWSALQMSKALQDS 236
Score = 29.3 bits (64), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAA 57
G +PLH+AA+ + + + L R +D+ + K G TPL A+
Sbjct: 177 GDSPLHIAARENRYDCVVLFLSRDSDVTLKNKE--GETPLQCAS 218
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G +PLH+AA G E++ LL +GA ++A + C TPLH AA + + E L+E GA
Sbjct: 73 GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGC--TPLHYAASKNRHEIAVMLLEGGA 130
Query: 74 FLPD 77
PD
Sbjct: 131 N-PD 133
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 16 TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL 75
T LH A GH E+++ LL+ G ++ K GW+PLH AA + E V+ L+ GA +
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVN--DKDDAGWSPLHIAASAGRDEIVKALLGKGAQV 99
Query: 76 PDDINDSRFNPPLHYCPS 93
+ +N + PLHY S
Sbjct: 100 -NAVNQNGCT-PLHYAAS 115
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G TPLH AA E+ +LLE GA+ DA+ T +H AA + + + L+ A
Sbjct: 106 GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEA--TAMHRAAAKGNLKMIHILLYYKA 163
Query: 74 FLPDDINDSRFNPPLH 89
+I D+ N PLH
Sbjct: 164 --STNIQDTEGNTPLH 177
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 16 TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL 75
T +H AA G+L+++ +LL A + + G TPLH A E + E + L+ GA +
Sbjct: 141 TAMHRAAAKGNLKMIHILLYYKASTNIQDTE--GNTPLHLACDEERVEEAKLLVSQGASI 198
Score = 26.2 bits (56), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTA 56
++G TPLHLA +E +L+ +GA I K TPL A
Sbjct: 170 TEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEE--KTPLQVA 212
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G +PLH+AA G E++ LL +GA ++A + C TPLH AA + + E L+E GA
Sbjct: 74 GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGC--TPLHYAASKNRHEIAVMLLEGGA 131
Query: 74 FLPD 77
PD
Sbjct: 132 N-PD 134
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 16 TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL 75
T LH A GH E+++ LL+ G ++ K GW+PLH AA + E V+ L+ GA +
Sbjct: 43 TALHWACSAGHTEIVEFLLQLGVPVN--DKDDAGWSPLHIAASAGRDEIVKALLGKGAQV 100
Query: 76 PDDINDSRFNPPLHYCPS 93
+ +N + PLHY S
Sbjct: 101 -NAVNQNGCT-PLHYAAS 116
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G TPLH AA E+ +LLE GA+ DA+ T +H AA + + + L+ A
Sbjct: 107 GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEA--TAMHRAAAKGNLKMIHILLYYKA 164
Query: 74 FLPDDINDSRFNPPLH 89
+I D+ N PLH
Sbjct: 165 --STNIQDTEGNTPLH 178
Score = 34.3 bits (77), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 16 TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL 75
T +H AA G+L+++ +LL A + + G TPLH A E + E + L+ GA +
Sbjct: 142 TAMHRAAAKGNLKMIHILLYYKASTNIQDTE--GNTPLHLACDEERVEEAKLLVSQGASI 199
Score = 25.8 bits (55), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTA 56
++G TPLHLA +E +L+ +GA I K TPL A
Sbjct: 171 TEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEE--KTPLQVA 213
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 16 TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL 75
T LH A GH E+++ LL+ G ++ K GW+PLH AA + E V+ L+ GA +
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVN--DKDDAGWSPLHIAASAGRDEIVKALLVKGAHV 99
Query: 76 PDDINDSRFNPPLHYCPS 93
+ +N + PLHY S
Sbjct: 100 -NAVNQNGCT-PLHYAAS 115
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G +PLH+AA G E++ LL +GA ++A + C TPLH AA + + E L+E GA
Sbjct: 73 GWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGC--TPLHYAASKNRHEIAVMLLEGGA 130
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G TPLH AA E+ +LLE GA+ DA K T +H AA + + V L+ A
Sbjct: 106 GCTPLHYAASKNRHEIAVMLLEGGANPDA--KDHYDATAMHRAAAKGNLKMVHILLFYKA 163
Query: 74 FLPDDINDSRFNPPLH 89
+I D+ N PLH
Sbjct: 164 --STNIQDTEGNTPLH 177
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 3 VNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKK 62
+NV + TPLHLAA + ++ +LL+ GAD+ A+ KG G PLH A
Sbjct: 47 LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKG--GLVPLHNACSYGHY 104
Query: 63 EAVRFLIENGAFL 75
E L+++GA +
Sbjct: 105 EVTELLLKHGACV 117
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G+ PLH A GH EV ++LL+ GA ++A +TPLH AA + + E L+ +GA
Sbjct: 91 GLVPLHNACSYGHYEVTELLLKHGACVNAMD--LWQFTPLHEAASKNRVEVCSLLLSHGA 148
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 15 VTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
+TPLH+AA+ H +VM+VL + GA ++A + G T LH AA + R L+ G+
Sbjct: 248 MTPLHVAAERAHNDVMEVLHKHGAKMNALD--SLGQTALHRAALAGHLQTCRLLLSYGS 304
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 16 TPLHLAAQGGHLEVMDVLLERGAD---IDARTKGACGWTP 52
TPLH AA +EV +LL GAD ++ K A P
Sbjct: 126 TPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAP 165
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 12 SKGVTPLHLAAQGGHLEVMDVLLERGAD 39
S G T LH AA GHL+ +LL G+D
Sbjct: 278 SLGQTALHRAALAGHLQTCRLLLSYGSD 305
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLI 69
P G TP H+A G+LEV+ L +R D G T LH A ++ E +FLI
Sbjct: 68 PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI 127
Query: 70 ENGAFLPDDINDSRFNPPLHYCPSL 94
ENGA + I D PLH S+
Sbjct: 128 ENGASV--RIKDKFNQIPLHRAASV 150
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 16 TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIE 70
PLH AA G L+++++L G + GWTPL A E +A L+E
Sbjct: 142 IPLHRAASVGSLKLIELLCGLGKSA-VNWQDKQGWTPLFHALAEGHGDAAVLLVE 195
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLI 69
P G TP H+A G+LEV+ L +R D G T LH A ++ E +FLI
Sbjct: 68 PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI 127
Query: 70 ENGAFLPDDINDSRFNPPLHYCPSL 94
ENGA + I D PLH S+
Sbjct: 128 ENGASV--RIKDKFNQIPLHRAASV 150
Score = 30.4 bits (67), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 16 TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIE 70
PLH AA G L+++++L G + GWTPL A E +A L+E
Sbjct: 142 IPLHRAASVGSLKLIELLCGLGKSA-VNWQDKQGWTPLFHALAEGHGDAAVLLVE 195
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLI 69
P G TP H+A G+LEV+ L +R D G T LH A ++ E +FLI
Sbjct: 68 PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI 127
Query: 70 ENGAFLPDDINDSRFNPPLHYCPSL 94
ENGA + I D PLH S+
Sbjct: 128 ENGASV--RIKDKFNQIPLHRAASV 150
Score = 30.4 bits (67), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 16 TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIE 70
PLH AA G L+++++L G + GWTPL A E +A L+E
Sbjct: 142 IPLHRAASVGSLKLIELLCGLGKSA-VNWQDKQGWTPLFHALAEGHGDAAVLLVE 195
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G +PLH+AA G E++ LL +GA ++A + C TPLH AA + + E L+E GA
Sbjct: 73 GWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGC--TPLHYAASKNRHEIAVMLLEGGA 130
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 16 TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL 75
T LH A GH E+++ LL+ G ++ K GW+PLH AA E V+ L+ GA +
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVN--DKDDAGWSPLHIAASAGXDEIVKALLVKGAHV 99
Query: 76 PDDINDSRFNPPLHYCPS 93
+ +N + PLHY S
Sbjct: 100 -NAVNQNGCT-PLHYAAS 115
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G TPLH AA E+ +LLE GA+ DA K T +H AA + + V L+ A
Sbjct: 106 GCTPLHYAASKNRHEIAVMLLEGGANPDA--KDHYDATAMHRAAAKGNLKMVHILLFYKA 163
Query: 74 FLPDDINDSRFNPPLH 89
+I D+ N PLH
Sbjct: 164 --STNIQDTEGNTPLH 177
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 6 AAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAV 65
A+ P+S +P+H AA+ GH+E ++ L+ G +ID + TPL+ A + +++ V
Sbjct: 93 ASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHL--GTPLYLACENQQRACV 150
Query: 66 RFLIENGAFLPDDINDSRF-NPPLH 89
+ L+E+GA D+N + + PLH
Sbjct: 151 KKLLESGA----DVNQGKGQDSPLH 171
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 15 VTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGW-TPLHTAAKERKKEAVRFLIENGA 73
V+PLH A GGHL + +LL+ GA ++ T W TPL A + V L+++GA
Sbjct: 37 VSPLHEACLGGHLSCVKILLKHGAQVNGVTA---DWHTPLFNACVSGSWDCVNLLLQHGA 93
Query: 74 FLPDDINDSRFNPPLH 89
+ +S P+H
Sbjct: 94 SVQP---ESDLASPIH 106
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 4 NVAAWGPKSK-GVTPLHLAAQGGHLEVMDVLLERGADIDARTK 45
N A K K G TPLHLAA+ GHLEV+ +LLE GAD++A+ K
Sbjct: 28 NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDK 70
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 21 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
AA+ G + + +L+ GAD+ A+ K G TPLH AA+ E V+ L+E GA
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKN--GSTPLHLAARNGHLEVVKLLLEAGA 63
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 91
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 4 NVAAWGPKSK-GVTPLHLAAQGGHLEVMDVLLERGADIDARTK 45
N A K K G TPLHLAA+ GHLE+++VLL+ GAD++A+ K
Sbjct: 24 NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 66
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 21 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
AA+ G + + +L+ GAD++A+ K G+TPLH AA+E E V L++ GA
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKD--GYTPLHLAAREGHLEIVEVLLKAGA 59
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 6 AAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAV 65
A+ P+S +P+H AA+ GH+E ++ L+ G +ID + TPL+ A + +++ V
Sbjct: 149 ASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHL--GTPLYLACENQQRACV 206
Query: 66 RFLIENGAFLPDDINDSRF-NPPLH 89
+ L+E+GA D+N + + PLH
Sbjct: 207 KKLLESGA----DVNQGKGQDSPLH 227
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 15 VTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGW-TPLHTAAKERKKEAVRFLIENGA 73
V+PLH A GGHL + +LL+ GA ++ T W TPL A + V L+++GA
Sbjct: 93 VSPLHEACLGGHLSCVKILLKHGAQVNGVTA---DWHTPLFNACVSGSWDCVNLLLQHGA 149
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 16 TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL 75
TPLH AA + V++ LL+ GAD+ A+ KG G PLH A E L+++GA +
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKG--GLVPLHNACSYGHYEVAELLVKHGAVV 101
Query: 76 PDDINDSRFNPPLH 89
++ D PLH
Sbjct: 102 --NVADLWKFTPLH 113
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G+ PLH A GH EV ++L++ GA ++ +TPLH AA + K E + L+++GA
Sbjct: 75 GLVPLHNACSYGHYEVAELLVKHGAVVNVAD--LWKFTPLHEAAAKGKYEICKLLLQHGA 132
Query: 74 FLPDDINDSR-FNPPLHYCPSLEWAYEEMMR 103
D +R N PL + ++++R
Sbjct: 133 ---DPTKKNRDGNTPLDLVKDGDTDIQDLLR 160
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 16 TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL 75
TPLH AA + V++ LL+ GAD+ A+ KG G PLH A E L+++GA +
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKG--GLVPLHNACSYGHYEVAELLVKHGAVV 105
Query: 76 PDDINDSRFNPPLH 89
++ D PLH
Sbjct: 106 --NVADLWKFTPLH 117
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 10/93 (10%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGW--TPLHTAAKERKKEAVRFLIEN 71
G+ PLH A GH EV ++L++ GA ++ A W TPLH AA + K E + L+++
Sbjct: 79 GLVPLHNACSYGHYEVAELLVKHGAVVNV----ADLWKFTPLHEAAAKGKYEICKLLLQH 134
Query: 72 GAFLPDDINDSR-FNPPLHYCPSLEWAYEEMMR 103
GA D +R N PL + ++++R
Sbjct: 135 GA---DPTKKNRDGNTPLDLVKDGDTDIQDLLR 164
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 16 TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL 75
TPLH AA + V++ LL+ GAD+ A+ KG G PLH A E L+++GA +
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKG--GLVPLHNACSYGHYEVAELLVKHGAVV 103
Query: 76 PDDINDSRFNPPLH 89
++ D PLH
Sbjct: 104 --NVADLWKFTPLH 115
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGW--TPLHTAAKERKKEAVRFLIEN 71
G+ PLH A GH EV ++L++ GA ++ A W TPLH AA + K E + L+++
Sbjct: 77 GLVPLHNACSYGHYEVAELLVKHGAVVNV----ADLWKFTPLHEAAAKGKYEICKLLLQH 132
Query: 72 GAFLPDDINDSRFNPPLHYCPSLEWAYEEMMR 103
GA D N PL + ++++R
Sbjct: 133 GADPTKKNRDG--NTPLDLVKDGDTDIQDLLR 162
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 4 NVAAWGPKSK-GVTPLHLAAQGGHLEVMDVLLERGADIDARTK 45
N A K K G TPLHLAA+ GHLEV+ +LLE GAD+ A+ K
Sbjct: 46 NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDK 88
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 21 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
AA+ G + + +L+ GAD+ A+ K G TPLH AA+ E V+ L+E GA
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDK--NGSTPLHLAARNGHLEVVKLLLEAGA 81
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLI 69
P +G+T LH A G + ++D L+ GA+++ + + GWTPLH AA L+
Sbjct: 50 PNEEGITALHNAICGANYSIVDFLITAGANVN--SPDSHGWTPLHCAASCNDTVICMALV 107
Query: 70 ENGAFL 75
++GA +
Sbjct: 108 QHGAAI 113
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART 44
P S G TPLH AA + L++ GA I A T
Sbjct: 83 PDSHGWTPLHCAASCNDTVICMALVQHGAAIFATT 117
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 8/79 (10%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G +PLH A + G V+++L+ RGA I+ +G TPLH AA ++ V+ L++ A
Sbjct: 34 GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD--TPLHLAASHGHRDIVQKLLQYKA 91
Query: 74 FLPDDIN--DSRFNPPLHY 90
DIN + N PLHY
Sbjct: 92 ----DINAVNEHGNVPLHY 106
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 16 TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL 75
TPLHLAA GH +++ LL+ ADI+A + G PLH A + + L+ NGA +
Sbjct: 69 TPLHLAASHGHRDIVQKLLQYKADINAVNEH--GNVPLHYACFWGQDQVAEDLVANGALV 126
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 8/79 (10%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G +PLH A + G V+++L+ RGA I+ +G TPLH AA ++ V+ L++ A
Sbjct: 39 GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD--TPLHLAASHGHRDIVQKLLQYKA 96
Query: 74 FLPDDIN--DSRFNPPLHY 90
DIN + N PLHY
Sbjct: 97 ----DINAVNEHGNVPLHY 111
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 16 TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL 75
TPLHLAA GH +++ LL+ ADI+A + G PLH A + + L+ NGA +
Sbjct: 74 TPLHLAASHGHRDIVQKLLQYKADINAVNEH--GNVPLHYACFWGQDQVAEDLVANGALV 131
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 2 DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
DVN G G PLH AA G LE+++ LL +GADI+A K TPL +A E
Sbjct: 27 DVNRTLEG----GRKPLHYAADCGQLEILEFLLLKGADINAPDKHH--ITPLLSAVYEGH 80
Query: 62 KEAVRFLIENGA 73
V+ L+ GA
Sbjct: 81 VSCVKLLLSKGA 92
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLI 69
P +TPL A GH+ + +LL +GA D KG G T L +A++ L+
Sbjct: 64 PDKHHITPLLSAVYEGHVSCVKLLLSKGA--DKTVKGPDGLTALEAT----DNQAIKALL 117
Query: 70 E 70
+
Sbjct: 118 Q 118
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex
With V-1
Length = 123
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 2 DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
DVN G G PLH AA G LE+++ LL +GADI+A K TPL +A E
Sbjct: 32 DVNRTLEG----GRKPLHYAADCGQLEILEFLLLKGADINAPDKHH--ITPLLSAVYEGH 85
Query: 62 KEAVRFLIENGA 73
V+ L+ GA
Sbjct: 86 VSCVKLLLSKGA 97
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 10 PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLI 69
P +TPL A GH+ + +LL +GA D KG G TA + +A++ L+
Sbjct: 69 PDKHHITPLLSAVYEGHVSCVKLLLSKGA--DKTVKGPDGL----TAFEATDNQAIKALL 122
Query: 70 E 70
+
Sbjct: 123 Q 123
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G TPLH A GHL+V+++LL+ A ++ T G +PLH AAK + V+ L+ GA
Sbjct: 43 GWTPLHEACNHGHLKVVELLLQHKALVN--TTGYQNDSPLHDAAKNGHVDIVKLLLSYGA 100
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 13 KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
+G T LH+A+ G + ++ LL+ G+D K GWTPLH A + V L+++
Sbjct: 9 RGETLLHIASIKGDIPSVEYLLQNGSD--PNVKDHAGWTPLHEACNHGHLKVVELLLQHK 66
Query: 73 AFLPDDINDSRFNPPLH 89
A + + + + PLH
Sbjct: 67 ALV--NTTGYQNDSPLH 81
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 16 TPLHLAAQGGHLEVMDVLLERGADIDA 42
+PLH AA+ GH++++ +LL GA +A
Sbjct: 78 SPLHDAAKNGHVDIVKLLLSYGASRNA 104
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFL 68
+ G +P+H AA+ G L+ + VL+E GAD++A + G P+H A +E V FL
Sbjct: 74 ASGTSPVHDAARTGFLDTLKVLVEHGADVNALD--STGSLPIHLAIREGHSSVVSFL 128
Score = 30.8 bits (68), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 33 LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 90
LL++GA + + A G +P+H AA+ + ++ L+E+GA D+N DS + P+H
Sbjct: 62 LLKQGASPN--VQDASGTSPVHDAARTGFLDTLKVLVEHGA----DVNALDSTGSLPIHL 115
Query: 91 C 91
Sbjct: 116 A 116
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFL 68
+ G +P+H AA+ G L+ + VL+E GAD++A + G P+H A +E V FL
Sbjct: 72 ASGTSPVHDAARTGFLDTLKVLVEHGADVNALD--STGSLPIHLAIREGHSSVVSFL 126
Score = 30.8 bits (68), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 33 LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 90
LL++GA + + A G +P+H AA+ + ++ L+E+GA D+N DS + P+H
Sbjct: 60 LLKQGASPN--VQDASGTSPVHDAARTGFLDTLKVLVEHGA----DVNALDSTGSLPIHL 113
Query: 91 C 91
Sbjct: 114 A 114
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 43/90 (47%), Gaps = 17/90 (18%)
Query: 13 KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGAC-----------GWTPLHTAAKERK 61
+G T LH+A ++ ++ LL RGA + AR G+ G PL AA
Sbjct: 74 EGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGS 133
Query: 62 KEAVRFLIENGAFLPDDI--NDSRFNPPLH 89
+E VR LIE+GA DI DS N LH
Sbjct: 134 EEIVRLLIEHGA----DIRAQDSLGNTVLH 159
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADI---DARTKGACGWTPLHTAAKERKKEAVRFLIE 70
G T LH+AA +LE VL+E ++ ++ G T LH A + VR L+
Sbjct: 37 GETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLA 96
Query: 71 NGAFLPDDINDSRFNPPLHYCP 92
GA + S F HY P
Sbjct: 97 RGASVSARATGSVF----HYRP 114
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 16 TPLHLAAQGGHLEVMDVLLE-RGADIDARTKGACGWTPLHTAAKERKKEAVRFLIE 70
+PL LAA+ ++ + LL+ G ++ R GA G T LH AA EA L+E
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQR--GAMGETALHIAALYDNLEAAMVLME 58
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 15/101 (14%)
Query: 3 VNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDA--------RTKGACGW---- 50
VN + KG T LH+A + + ++ +L+E GAD+ A +TKG G+
Sbjct: 90 VNASYTDSYYKGQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGE 149
Query: 51 TPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLH 89
PL AA + V+FL++N ++ P DI+ DS N LH
Sbjct: 150 LPLSLAACTNQLAIVKFLLQN-SWQPADISARDSVGNTVLH 189
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 13 KGVTPLHLAAQGGHLEVMDVLLER 36
KG+TPL LAA G + V+ +L+R
Sbjct: 232 KGLTPLALAASSGKIGVLAYILQR 255
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G TPLHLA + V+++LL+ GAD AR G G TPL +A R L +GA
Sbjct: 192 GRTPLHLAVEAQAASVLELLLKAGADPTARMYG--GRTPLGSALLRPNPILARLLRAHGA 249
Query: 74 FLPDDIND 81
P+D D
Sbjct: 250 PEPEDGGD 257
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G TPLH+A E++ +L + GAD++ + + CG TPLH A + + + L++ GA
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLN-KPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G T LHLAA G ++ L GA + +G G T LH A + R L++
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERG--GHTALHLACRVRAHTCACVLLQPRP 102
Query: 74 FLPDDINDS 82
P D +D+
Sbjct: 103 SHPRDASDT 111
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G TPLHLA + V+++LL+ GAD AR G G TPL +A R L +GA
Sbjct: 192 GRTPLHLAVEAQAASVLELLLKAGADPTARMYG--GRTPLGSALLRPNPILARLLRAHGA 249
Query: 74 FLPDDIND 81
P+D D
Sbjct: 250 PEPEDGGD 257
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G TPLH+A E++ +L + GAD++ + + CG TPLH A + + + L++ GA
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLN-KPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G T LHLAA G ++ L GA + +G G T LH A + R L++
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERG--GHTALHLACRVRAHTCACVLLQPRP 102
Query: 74 FLPDDINDS 82
P D +D+
Sbjct: 103 SHPRDASDT 111
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFL 68
+ G +P+H AA+ G L+ + VL+E GAD++ G P+H A +E V FL
Sbjct: 72 TSGTSPVHDAARTGFLDTLKVLVEHGADVN--VPDGTGALPIHLAVQEGHTAVVSFL 126
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 2 DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
DVNV P G P+HLA Q GH V+ L A+ D + A G TPL A +
Sbjct: 99 DVNV----PDGTGALPIHLAVQEGHTAVVSFL---AAESDLHRRDARGLTPLELALQRGA 151
Query: 62 KEAVRFL 68
++ V L
Sbjct: 152 QDLVDIL 158
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 33 LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 90
LL++GA + + G +P+H AA+ + ++ L+E+GA D+N D P+H
Sbjct: 60 LLKQGASPN--VQDTSGTSPVHDAARTGFLDTLKVLVEHGA----DVNVPDGTGALPIHL 113
Query: 91 C 91
Sbjct: 114 A 114
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFL 68
+ G +P+H AA+ G L+ + VL+E GAD++ G P+H A +E V FL
Sbjct: 66 TSGTSPVHDAARTGFLDTLKVLVEHGADVN--VPDGTGALPIHLAVQEGHTAVVSFL 120
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 2 DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
DVNV P G P+HLA Q GH V+ L A+ D + A G TPL A +
Sbjct: 93 DVNV----PDGTGALPIHLAVQEGHTAVVSFL---AAESDLHRRDARGLTPLELALQRGA 145
Query: 62 KEAVRFL 68
++ V L
Sbjct: 146 QDLVDIL 152
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 33 LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 90
LL++GA + + G +P+H AA+ + ++ L+E+GA D+N D P+H
Sbjct: 54 LLKQGASPN--VQDTSGTSPVHDAARTGFLDTLKVLVEHGA----DVNVPDGTGALPIHL 107
Query: 91 C 91
Sbjct: 108 A 108
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 7/71 (9%)
Query: 1 MDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKER 60
+D+N+ W G TPL A +G H++ ++ LL RGAD+ T+ G+TP+ A
Sbjct: 93 VDINIYDW----NGGTPLLYAVRGNHVKCVEALLARGADL--TTEADSGYTPMDLAVALG 146
Query: 61 KKEAVRFLIEN 71
++ V+ +IEN
Sbjct: 147 YRK-VQQVIEN 156
Score = 34.3 bits (77), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 16 TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL 75
+ L LA+ GG+ +++ +LLER D+D G TPL A + + V L+ GA L
Sbjct: 71 SALSLASTGGYTDIVGLLLER--DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADL 128
Query: 76 PDDINDSRFNP 86
+ DS + P
Sbjct: 129 TTEA-DSGYTP 138
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 10 PKSKGVTPLHLAAQGGHLEVMDVLLERGAD 39
P +G TPL A+ G +E + LLE GAD
Sbjct: 32 PDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Score = 25.8 bits (55), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 18 LHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
+H A G L+ + L +G ++ G+TPL A+ + E VRFL+E GA
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNL-VNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 11 KSKGVTPLHLAAQGGHLEVMDVLL-ERGADIDARTKGACGWTPLHTAAKERKKEAVRFLI 69
K KG T LH AAQ + ++ L+ E+G++ D + + G TP+ AA+E + E V +LI
Sbjct: 276 KYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDED--GKTPIXLAAQEGRIEVVXYLI 333
Query: 70 ENGAFL 75
+ GA +
Sbjct: 334 QQGASV 339
Score = 34.3 bits (77), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDA 42
G TP+ LAAQ G +EV+ L+++GA ++A
Sbjct: 313 GKTPIXLAAQEGRIEVVXYLIQQGASVEA 341
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G+T LH+A E + +LLERGADIDA G +PL A + V+ L+++GA
Sbjct: 116 GLTALHVAVNTECQETVQLLLERGADIDA-VDIKSGRSPLIHAVENNSLSMVQLLLQHGA 174
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 15/128 (11%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGA----DIDARTKGACGWTPLHTAAKERKKEAVRFLI 69
G T HLA + + LL+ A D++AR G T LH A +E V+ L+
Sbjct: 79 GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYD--GLTALHVAVNTECQETVQLLL 136
Query: 70 ENGAFLPD-DINDSRFNPPLHYCPSLEWAYEEMM-------RFQRESFSAGETSYSSEKL 121
E GA + DI R +P +H + + +++ Q S S+ S S L
Sbjct: 137 ERGADIDAVDIKSGR-SPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGL 195
Query: 122 NALSRLLV 129
L R LV
Sbjct: 196 LPLVRTLV 203
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 14 GVTPLHLAAQGGHL----EVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLI 69
G TPLH+A G+L ++++ + G ++D TPLH A VR L+
Sbjct: 9 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN--LRQTPLHLAVITTLPSVVRLLV 66
Query: 70 ENGA 73
GA
Sbjct: 67 TAGA 70
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 1 MDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKER 60
+D+N+ W G TPL A G H++ ++ LL RGAD+ T+ G+TP+ A
Sbjct: 93 VDINIYDW----NGGTPLLYAVHGNHVKCVEALLARGADL--TTEADSGYTPMDLAVALG 146
Query: 61 KKEAVRFLIEN 71
++ V+ +IEN
Sbjct: 147 YRK-VQQVIEN 156
Score = 33.1 bits (74), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 16 TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL 75
+ L LA+ GG+ +++ +LLER D+D G TPL A + V L+ GA L
Sbjct: 71 SALSLASTGGYTDIVGLLLER--DVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADL 128
Query: 76 PDDINDSRFNP 86
+ DS + P
Sbjct: 129 TTEA-DSGYTP 138
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 10 PKSKGVTPLHLAAQGGHLEVMDVLLERGAD 39
P +G TPL A+ G +E + LLE GAD
Sbjct: 32 PDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 18 LHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
+H A G L+ + L +G ++ G+TPL A+ + E VRFL+E GA
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNL-VNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 1 MDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKER 60
+D N G TPL A GGH E++ +LL+ GA I+A G T LH A E+
Sbjct: 139 LDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNK--GNTALHEAVIEK 196
Query: 61 KKEAVRFLIENGA 73
V L+ +GA
Sbjct: 197 HVFVVELLLLHGA 209
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 7/146 (4%)
Query: 1 MDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKER 60
+ VNV + G +PLH+AA G +++ +LL+ GA+ AR A PLH A ++
Sbjct: 77 LGVNVTSQ----DGSSPLHVAALHGRADLIPLLLKHGANAGARN--ADQAVPLHLACQQG 130
Query: 61 KKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGETSYSSEK 120
+ V+ L+++ A P+ + S P ++ C ++ S +A ++
Sbjct: 131 HFQVVKCLLDSNAK-PNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTAL 189
Query: 121 LNALSRLLVHMMPLLWLDLASDAVLS 146
A+ V ++ LL L AS VL+
Sbjct: 190 HEAVIEKHVFVVELLLLHGASVQVLN 215
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 13 KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
G T LHLA+ G+L ++++L+ GAD++A+ + G T LH A + + V L++ G
Sbjct: 113 NGHTCLHLASIHGYLGIVELLVSLGADVNAQ-EPCNGRTALHLAVDLQNPDLVSLLLKCG 171
Query: 73 AFLPDDINDSRF 84
A D+N +
Sbjct: 172 A----DVNRVTY 179
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 16 TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
TPLHLA E+ + LL GA D + G TPLH A ++ +V L ++
Sbjct: 44 TPLHLAVITNQPEIAEALL--GAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQS 97
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 13 KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
G T LHLA+ G+L ++++L+ GAD++A+ + G T LH A + + V L++ G
Sbjct: 116 NGHTCLHLASIHGYLGIVELLVSLGADVNAQ-EPCNGRTALHLAVDLQNPDLVSLLLKCG 174
Query: 73 AFLPDDIN 80
A D+N
Sbjct: 175 A----DVN 178
Score = 30.4 bits (67), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 16 TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 71
TPLHLA E+ + LL GA D + G TPLH A ++ +V L ++
Sbjct: 47 TPLHLAVITNQPEIAEALL--GAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQS 100
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 13/105 (12%)
Query: 13 KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA------------CGWTPLHTAAKER 60
+G T LH+A + +++L+E+GAD+ A+ +G G PL AA
Sbjct: 92 RGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTN 151
Query: 61 KKEAVRFLIENGAFLPD-DINDSRFNPPLHYCPSLEWAYEEMMRF 104
+ V +L ENG D DSR N LH ++ E +F
Sbjct: 152 QPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKF 196
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
Query: 3 VNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART--------KGAC---GWT 51
VN +G + LH+A + L+ + +L+E GA++ AR +G C G
Sbjct: 84 VNAQCTDDYYRGHSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGEL 143
Query: 52 PLHTAAKERKKEAVRFLIEN 71
PL AA ++ + V +L+EN
Sbjct: 144 PLSLAACTKQWDVVSYLLEN 163
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G +H AA+ G L+ + LLE AD++ G PLH AAKE V FL+++ A
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLENQADVNIEDN--EGNLPLHLAAKEGHLRVVEFLVKHTA 127
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 13/76 (17%)
Query: 2 DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGA-DIDART-KG--ACGWTPLHTAA 57
DVN+ ++G PLHLAA+ GHL V++ L++ A ++ R KG AC L+
Sbjct: 95 DVNI----EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYG-- 148
Query: 58 KERKKEAVRFLIENGA 73
+ E V + NGA
Sbjct: 149 ---RNEVVSLMQANGA 161
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G +H AA+ G L+ + LLE AD++ G PLH AAKE V FL+++ A
Sbjct: 70 GFAVIHDAARAGQLDTLQTLLEFQADVNIEDN--EGNLPLHLAAKEGHLRVVEFLVKHTA 127
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 13/76 (17%)
Query: 2 DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGA-DIDART-KG--ACGWTPLHTAA 57
DVN+ ++G PLHLAA+ GHL V++ L++ A ++ R KG AC L+
Sbjct: 95 DVNI----EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYG-- 148
Query: 58 KERKKEAVRFLIENGA 73
+ E V + NGA
Sbjct: 149 ---RNEVVSLMQANGA 161
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Query: 11 KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGAC---GWTPLHTAAKERKKEAVRF 67
K G TP LAA G ++++ + L +GAD++ C G+T AA K +A++F
Sbjct: 69 KKNGATPFLLAAIAGSVKLLKLFLSKGADVN-----ECDFYGFTAFMEAAVYGKVKALKF 123
Query: 68 LIENGA 73
L + GA
Sbjct: 124 LYKRGA 129
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 21 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
A Q ++++ LLE GA+++ + + GWTPLH A + +++ V L+ +GA
Sbjct: 12 AVQNEDVDLVQQLLEGGANVNFQEEEG-GWTPLHNAVQMSREDIVELLLRHGA 63
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G TPLH A Q +++++LL GAD R K G TP AA + ++ + GA
Sbjct: 39 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKN--GATPFLLAAIAGSVKLLKLFLSKGA 96
Query: 74 FLPDDINDSRFNPPLHYCPSLEWAYEEMMRF 104
D+N+ F + + + + ++F
Sbjct: 97 ----DVNECDFYGFTAFMEAAVYGKVKALKF 123
Score = 30.4 bits (67), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 11 KSKGVTPLHLAAQGGHLEVMDVLL-ERGADIDA 42
+ G T L AA+ GH+EV+ +LL E GAD++A
Sbjct: 145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNA 177
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 2 DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
DVNV +G TPL LA + HL ++ LLE+ I+ + G T L A + +
Sbjct: 211 DVNVRG----ERGKTPLILAVEKKHLGLVQRLLEQ-EHIEINDTDSDGKTALLLAVELKL 265
Query: 62 KEAVRFLIENGA 73
K+ L + GA
Sbjct: 266 KKIAELLCKRGA 277
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Query: 11 KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGAC---GWTPLHTAAKERKKEAVRF 67
K G TP LAA G ++++ + L +GAD++ C G+T AA K +A++F
Sbjct: 89 KKNGATPFILAAIAGSVKLLKLFLSKGADVN-----ECDFYGFTAFMEAAVYGKVKALKF 143
Query: 68 LIENGA 73
L + GA
Sbjct: 144 LYKRGA 149
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 21 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
A Q ++++ LLE GA+++ + + GWTPLH A + +++ V L+ +GA
Sbjct: 32 AVQNEDVDLVQQLLEGGANVNFQEEEG-GWTPLHNAVQMSREDIVELLLRHGA 83
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G TPLH A Q +++++LL GAD R K G TP AA + ++ + GA
Sbjct: 59 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKN--GATPFILAAIAGSVKLLKLFLSKGA 116
Query: 74 FLPDDINDSRF 84
D+N+ F
Sbjct: 117 ----DVNECDF 123
Score = 30.8 bits (68), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 11 KSKGVTPLHLAAQGGHLEVMDVLL-ERGADIDA 42
+ G T L AA+ GH+EV+ +LL E GAD++A
Sbjct: 165 RKGGATALMDAAEKGHVEVLKILLDEMGADVNA 197
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 2 DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
DVNV +G TPL LA + HL ++ LLE+ I+ + G T L A + +
Sbjct: 231 DVNVRG----ERGKTPLILAVEKKHLGLVQRLLEQ-EHIEINDTDSDGKTALLLAVELKL 285
Query: 62 KEAVRFLIENGA 73
K+ L + GA
Sbjct: 286 KKIAELLCKRGA 297
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Query: 3 VNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART--------KGAC---GWT 51
VN +G + LH+A + L+ + +L+E GAD+ R +G C G
Sbjct: 79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGEL 138
Query: 52 PLHTAAKERKKEAVRFLIEN 71
PL AA ++ + V +L+EN
Sbjct: 139 PLSLAACTKQWDVVTYLLEN 158
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 49 GWTPLHTAAKERKKEAVRFLIENGA 73
G + LH A ++R + V+ L+ENGA
Sbjct: 90 GHSALHIAIEKRSLQCVKLLVENGA 114
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 13 KGVTPLHLAAQGGHLEVMDVLLER 36
+G+TPL LAA+ G +E+ +L+R
Sbjct: 220 QGLTPLKLAAKEGKIEIFRHILQR 243
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Query: 3 VNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART--------KGAC---GWT 51
VN +G + LH+A + L+ + +L+E GAD+ R +G C G
Sbjct: 92 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGEL 151
Query: 52 PLHTAAKERKKEAVRFLIEN 71
PL AA ++ + V +L+EN
Sbjct: 152 PLSLAACTKQWDVVTYLLEN 171
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 49 GWTPLHTAAKERKKEAVRFLIENGA 73
G + LH A ++R + V+ L+ENGA
Sbjct: 103 GHSALHIAIEKRSLQCVKLLVENGA 127
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 13 KGVTPLHLAAQGGHLEVMDVLLER 36
+G+TPL LAA+ G +E+ +L+R
Sbjct: 233 QGLTPLKLAAKEGKIEIFRHILQR 256
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G +H AA+ G L+ + LLE AD++ G PLH AAKE V FL+++ A
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLEFQADVNIEDN--EGNLPLHLAAKEGHLRVVEFLVKHTA 127
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 13/76 (17%)
Query: 2 DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGA-DIDART-KG--ACGWTPLHTAA 57
DVN+ ++G PLHLAA+ GHL V++ L++ A ++ R KG AC L+
Sbjct: 95 DVNI----EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYG-- 148
Query: 58 KERKKEAVRFLIENGA 73
+ E V + NGA
Sbjct: 149 ---RNEVVSLMQANGA 161
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G +H AA+ G L+ + LLE AD++ G PLH AAKE V FL+++ A
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLEFQADVNIEDN--EGNLPLHLAAKEGHLRVVEFLVKHTA 127
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 13/76 (17%)
Query: 2 DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGA-DIDART-KG--ACGWTPLHTAA 57
DVN+ ++G PLHLAA+ GHL V++ L++ A ++ R KG AC L+
Sbjct: 95 DVNI----EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYG-- 148
Query: 58 KERKKEAVRFLIENGA 73
+ E V + NGA
Sbjct: 149 ---RNEVVSLMQANGA 161
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G +H AA+ G L+ + LLE AD++ G PLH AAKE V FL+++ A
Sbjct: 70 GNAVIHDAARAGFLDTLQTLLEFQADVNIEDN--EGNLPLHLAAKEGHLRVVEFLVKHTA 127
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 13/76 (17%)
Query: 2 DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGA-DIDART-KG--ACGWTPLHTAA 57
DVN+ ++G PLHLAA+ GHL V++ L++ A ++ R KG AC L+
Sbjct: 95 DVNI----EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYG-- 148
Query: 58 KERKKEAVRFLIENGA 73
+ E V + NGA
Sbjct: 149 ---RNEVVSLMQANGA 161
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 34.7 bits (78), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G TPL + G+ E+ LLE GA+++ R G TPL A+K + E V+ L+E GA
Sbjct: 101 GKTPLMWSIIFGYSEMSYFLLEHGANVNDRN--LEGETPLIVASKYGRSEIVKKLLELGA 158
Score = 34.3 bits (77), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 13 KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIE 70
+G TPL +A++ G E++ LLE GADI AR G T +A ++E ++ E
Sbjct: 133 EGETPLIVASKYGRSEIVKKLLELGADISARD--LTGLTAEASARIFGRQEVIKIFTE 188
Score = 29.6 bits (65), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 13 KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
+G T L A + L + + LL +G++++ TK G TPL + E FL+E+G
Sbjct: 67 EGSTALIWAVKNNRLGIAEKLLSKGSNVN--TKDFSGKTPLMWSIIFGYSEMSYFLLEHG 124
Query: 73 AFLPD 77
A + D
Sbjct: 125 ANVND 129
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 34.3 bits (77), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 13 KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAA 57
+G + +HLAAQ GH ++ L+ +G D+D + G TPL AA
Sbjct: 108 EGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQN--GMTPLMWAA 150
Score = 33.1 bits (74), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 16 TPLHLAAQGGHLEVMDVLLERGAD---IDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
TPLH A + GHL ++ L++ GAD ID G + +H AA+ V +LI G
Sbjct: 78 TPLHWATRQGHLSMVVQLMKYGADPSLIDGE-----GCSCIHLAAQFGHTSIVAYLIAKG 132
Query: 73 AFLPDDINDSRFNPPL 88
+ D+ D PL
Sbjct: 133 QDV--DMMDQNGMTPL 146
Score = 30.0 bits (66), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 9 GPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART 44
G K T LH A G+ V+ +LLE GA++DA+
Sbjct: 172 GDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQN 207
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To
1.55a Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To
1.55a Resolution
Length = 223
Score = 33.9 bits (76), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G T LHLAA+ + LLE AD A + G TPLH A + + LI N A
Sbjct: 25 GETALHLAARYSRSDAAKRLLEASAD--ANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 82
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G TPL LAA+ +++ L+ AD++A G + LH AA +A L++NGA
Sbjct: 92 GTTPLILAARLAVEGMLEDLINSHADVNAVDD--LGKSALHWAAAVNNVDAAVVLLKNGA 149
Query: 74 FLPDDINDSRFNPPLHYCPSLEWAYE 99
D+ ++R PL + + E +YE
Sbjct: 150 --NKDMQNNREETPL-FLAAREGSYE 172
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 33.5 bits (75), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G T LHLAA + LLE AD A + G TPLH A + + LI N A
Sbjct: 57 GATALHLAAAYSRSDAAKRLLEASAD--ANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 114
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G TPL LAA+ +++ L+ AD++A G + LH AA +A L++NGA
Sbjct: 124 GTTPLILAARLAVEGMLEDLINSHADVNAVDD--LGKSALHWAAAVNNVDAAVVLLKNGA 181
Query: 74 FLPDDINDSRFNPPLHYCPSLEWAYE 99
D+ ++R PL + + E +YE
Sbjct: 182 --NKDMQNNREETPL-FLAAREGSYE 204
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 33.1 bits (74), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G T LHLAA+ + LLE A DA + G TPLH A + + LI N A
Sbjct: 58 GETALHLAARYSRSDAAKRLLE--ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 115
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G TPL LAA+ +++ L+ AD++A G + LH AA +A L++NGA
Sbjct: 125 GTTPLILAARLAVEGMLEDLINSHADVNAVDD--LGKSALHWAAAVNNVDAAVVLLKNGA 182
Query: 74 FLPDDINDSRFNPPLHYCPSLEWAYE 99
D+ ++R PL + + E +YE
Sbjct: 183 --NKDMQNNREETPL-FLAAREGSYE 205
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 33.1 bits (74), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G T LHLAA+ + LLE AD A + G TPLH A + + LI N A
Sbjct: 57 GETALHLAARYSRSDAAKRLLEASAD--ANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 114
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G TPL LAA+ +++ L+ AD++A G + LH AA +A L++NGA
Sbjct: 124 GTTPLILAARLAVEGMLEDLINSHADVNAVDD--LGKSALHWAAAVNNVDAAVVLLKNGA 181
Query: 74 FLPDDINDSRFNPPLHYCPSLEWAYE 99
D+ ++R PL + + E +YE
Sbjct: 182 --NKDMQNNREETPL-FLAAREGSYE 204
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 33.1 bits (74), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 13 KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
+G TPL AA G + V++ LL+ GAD KG + L A + + V+ L++ G
Sbjct: 51 EGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGR--ESALSLACSKGYTDIVKMLLDCG 108
Query: 73 AFLPDDINDSRFN--PPLHY 90
D+N+ +N PL Y
Sbjct: 109 V----DVNEYDWNGGTPLLY 124
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 1 MDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKER 60
+DVN W G TPL A G H++ + +LLE GAD T L A R
Sbjct: 109 VDVNEYDW----NGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 164
Query: 61 KKEAV 65
+ V
Sbjct: 165 SVQQV 169
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 33.1 bits (74), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIE 70
++G TPL++A +E+ L++RGADI+ + + +P A + + E + ++++
Sbjct: 37 TEGNTPLNIAVHNNDIEIAKALIDRGADINLQN--SISDSPYLYAGAQGRTEILAYMLK 93
Score = 30.8 bits (68), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 12/90 (13%)
Query: 21 AAQGGHLEVMDVLLERG-ADIDARTKGACGWTPLHTAAKERK-----KEAVRFLIENGAF 74
AA+ GH++ + +LLE G DID + G+T L A R+ ++ V+ L+ENGA
Sbjct: 113 AAEKGHIDNVKLLLEDGREDIDFQND--FGYTALIEAVGLREGNQLYQDIVKLLMENGA- 169
Query: 75 LPDDINDSRFNPPLHYCPSLEWAYEEMMRF 104
I D+ + Y + Y E+ +
Sbjct: 170 -DQSIKDNSGRTAMDYAN--QKGYTEISKI 196
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 33.1 bits (74), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 13 KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
+G TPL AA G + V++ LL+ GAD KG + L A + + V+ L++ G
Sbjct: 33 EGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGR--ESALSLACSKGYTDIVKMLLDCG 90
Query: 73 AFLPDDINDSRFN--PPLHY 90
D+N+ +N PL Y
Sbjct: 91 V----DVNEYDWNGGTPLLY 106
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 1 MDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKER 60
+DVN W G TPL A G H++ + +LLE GAD T L A R
Sbjct: 91 VDVNEYDW----NGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 146
Query: 61 KKEAV 65
+ V
Sbjct: 147 SVQQV 151
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 32.7 bits (73), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 13 KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 72
+G TPL AA G + V++ LL+ GAD KG + L A + + V+ L++ G
Sbjct: 35 EGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGR--ESALSLACSKGYTDIVKMLLDCG 92
Query: 73 AFLPDDINDSRFN--PPLHY 90
D+N+ +N PL Y
Sbjct: 93 V----DVNEYDWNGGTPLLY 108
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 1 MDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKER 60
+DVN W G TPL A G H++ + +LLE GAD T L A R
Sbjct: 93 VDVNEYDW----NGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 148
Query: 61 KKEAV 65
+ V
Sbjct: 149 SVQQV 153
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G TPL LAA+ +++ L+ ADI+A G T LH AA EAV L+ + A
Sbjct: 118 GTTPLILAARLAIEGMVEDLITADADINAADN--SGKTALHWAAAVNNTEAVNILLMHHA 175
Query: 74 FLPDDINDSRFNPPLHYCPSLEWAYE 99
D D + PL + + E +YE
Sbjct: 176 --NRDAQDDKDETPL-FLAAREGSYE 198
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 2 DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK 61
D+N A + G T LH AA + E +++LL A+ DA+ TPL AA+E
Sbjct: 143 DINAA----DNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDD--KDETPLFLAAREGS 196
Query: 62 KEAVRFLIEN 71
EA + L++N
Sbjct: 197 YEASKALLDN 206
Score = 30.0 bits (66), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 1 MDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLL-ERGADIDARTKGACGWTPLHTAAKE 59
+D A + G TPLH A + V +LL R +++AR G TPL AA
Sbjct: 71 LDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHD--GTTPLILAA-- 126
Query: 60 RKKEAVRFLIENGAFLPDDIN--DSRFNPPLHYCPSL 94
+ A+ ++E+ DIN D+ LH+ ++
Sbjct: 127 --RLAIEGMVEDLITADADINAADNSGKTALHWAAAV 161
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G T LHLAA+ + LL+ GA DA ++ G TPLH A + L+ N A
Sbjct: 51 GETSLHLAARFARADAAKRLLDAGA--DANSQDNTGRTPLHAAVAADAMGVFQILLRNRA 108
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G T LHLAA+ + LLE AD A + G TPLH A + + L+ N A
Sbjct: 22 GETALHLAARYSRSDAAKRLLEASAD--AXIQDNMGRTPLHAAVSADAQGVFQILLRNRA 79
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G TPL LAA+ +++ L+ AD++A G + LH AA +A L++NGA
Sbjct: 89 GTTPLILAARLALEGMLEDLINSHADVNAVDD--LGKSALHWAAAVNNVDAAVVLLKNGA 146
Query: 74 FLPDDINDSRFNPPLHYCPSLEWAYE 99
D+ +++ PL + + E +YE
Sbjct: 147 --NKDMQNNKEETPL-FLAAREGSYE 169
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 13/105 (12%)
Query: 13 KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA------------CGWTPLHTAAKER 60
+G T LH+A + +++L+ +GAD+ A+ +G G PL AA
Sbjct: 90 RGQTALHIAIERRCKHYVELLVAQGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTN 149
Query: 61 KKEAVRFLIENGAFLPD-DINDSRFNPPLHYCPSLEWAYEEMMRF 104
+ V +L EN D DSR N LH ++ E +F
Sbjct: 150 QPHIVNYLTENPHKKADMRRQDSRGNTVLHALVAIADNTRENTKF 194
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 31.2 bits (69), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G T L A G + + +L E GAD+D R G T LH AA + E V L+E GA
Sbjct: 76 GRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG-GLTALHMAAGYVRPEVVEALVELGA 134
Query: 74 FLPDDINDSR 83
+ ++ D R
Sbjct: 135 DI--EVEDER 142
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G T L A G + + +L E GAD+D R G T LH AA + E V L+E GA
Sbjct: 77 GRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG-GLTALHMAAGYVRPEVVEALVELGA 135
Query: 74 FLPDDINDSR 83
+ ++ D R
Sbjct: 136 DI--EVEDER 143
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 10 PKSKGVTPLHLAA----QGGH---LEVMDVLLERGADIDARTKGACGWTPLHTAAKERKK 62
P S+ + LH A GH L M L GAD++ G TPL A
Sbjct: 189 PPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSL 248
Query: 63 EAVRFLIENGAFLPDDINDSRFNPPLHY 90
A FL++NGA + + DS PLH+
Sbjct: 249 LACEFLLQNGANV--NQADSAGRGPLHH 274
Score = 29.6 bits (65), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFL 68
S G PLH A GH + + L+RGAD+ AR G PL A + + V L
Sbjct: 266 SAGRGPLHHATILGHTGLACLFLKRGADLGARDSE--GRDPLTIAMETANADIVTLL 320
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 10 PKSKGVTPLHLAA----QGGH---LEVMDVLLERGADIDARTKGACGWTPLHTAAKERKK 62
P S+ + LH A GH L M L GAD++ G TPL A
Sbjct: 189 PPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSL 248
Query: 63 EAVRFLIENGAFLPDDINDSRFNPPLHY 90
A FL++NGA + + DS PLH+
Sbjct: 249 LACEFLLQNGANV--NQADSAGRGPLHH 274
Score = 29.6 bits (65), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFL 68
S G PLH A GH + + L+RGAD+ AR G PL A + + V L
Sbjct: 266 SAGRGPLHHATILGHTGLACLFLKRGADLGARDSE--GRDPLTIAMETANADIVTLL 320
>pdb|2XUM|S Chain S, Factor Inhibiting Hif (Fih) Q239h Mutant In Complex With
Zn(Ii), Nog And Asp-Substrate Peptide (20-Mer)
Length = 20
Score = 30.0 bits (66), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 17/20 (85%)
Query: 26 HLEVMDVLLERGADIDARTK 45
HLEV+ +LLE GAD+DA+ K
Sbjct: 1 HLEVVKLLLEHGADVDAQDK 20
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 30.0 bits (66), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 15/79 (18%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDAR-----------TKGACGWTPLHTAAKERKK 62
G T LH AA G+ +++ +LL +GA D R T AC K++
Sbjct: 140 GDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXATNAACA----SLLKKKQGT 195
Query: 63 EAVRFLIENGAFLPDDIND 81
+AVR L +L D+ +D
Sbjct: 196 DAVRTLSNAEDYLDDEDSD 214
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 30.0 bits (66), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 10 PKSKGVTPLHLAA----QGGH---LEVMDVLLERGADIDARTKGACGWTPLHTAAKERKK 62
P S+ + LH A GH L M L GAD++ G TPL A
Sbjct: 189 PPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSL 248
Query: 63 EAVRFLIENGAFLPDDINDSRFNPPLHY 90
A FL++NGA + + DS PLH+
Sbjct: 249 LACEFLLQNGANV--NQADSAGRGPLHH 274
Score = 29.6 bits (65), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 12 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFL 68
S G PLH A GH + + L+RGAD+ AR G PL A + + V L
Sbjct: 266 SAGRGPLHHATILGHTGLACLFLKRGADLGARDSE--GRDPLTIAMETANADIVTLL 320
>pdb|2EP5|A Chain A, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
pdb|2EP5|B Chain B, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
pdb|2EP5|C Chain C, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
pdb|2EP5|D Chain D, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
Length = 350
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 68 LIENGAFLPDDINDSRFNPPLHYC-PSLEWAYEEMMRFQRE 107
L++NG + + + R +P + P + W + E+++FQ+E
Sbjct: 97 LVKNGKIVVSNASPFRMDPDVPLINPEINWEHLELLKFQKE 137
>pdb|2YW2|A Chain A, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
In Complex With Atp
pdb|2YW2|B Chain B, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
In Complex With Atp
pdb|2YYA|A Chain A, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
pdb|2YYA|B Chain B, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
Length = 424
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 42 ARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFN 85
R C + AKER EA+R++ G DI D F
Sbjct: 377 GRVLNVCAYGKTLKEAKERAYEAIRYVCFEGMHYRKDIGDKAFK 420
>pdb|1VQ1|A Chain A, Crystal Structure Of N5-Glutamine Methyltransferase,
Hemk(Ec 2.1.1.-) (Tm0488) From Thermotoga Maritima At
2.80 A Resolution
pdb|1VQ1|B Chain B, Crystal Structure Of N5-Glutamine Methyltransferase,
Hemk(Ec 2.1.1.-) (Tm0488) From Thermotoga Maritima At
2.80 A Resolution
Length = 294
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 45 KGACGWTPLHTAAKERKKEAVRFLIENGAFLP 76
K A G+ PLH E++ + FL+E G F+P
Sbjct: 84 KRASGY-PLHYILGEKEFXGLSFLVEEGVFVP 114
>pdb|4B7K|B Chain B, Factor Inhibiting Hif-1 Alpha In Complex With Consensus
Ankyrin Repeat Domain-ser Peptide (20-mer)
Length = 20
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 26 HLEVMDVLLERGADIDARTK 45
HLEV+ +LLE GAD+ A+ K
Sbjct: 1 HLEVVKLLLEHGADVSAQDK 20
>pdb|1SG9|A Chain A, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
pdb|1SG9|B Chain B, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
pdb|1SG9|C Chain C, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
Length = 282
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 45 KGACGWTPLHTAAKERKKEAVRFLIENGAFLP 76
K A G+ PLH E++ + FL+E G F+P
Sbjct: 72 KRASGY-PLHYILGEKEFMGLSFLVEEGVFVP 102
>pdb|1NV8|A Chain A, N5-Glutamine Methyltransferase, Hemk
pdb|1NV8|B Chain B, N5-Glutamine Methyltransferase, Hemk
pdb|1NV9|A Chain A, Hemk, Apo Structure
Length = 284
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 45 KGACGWTPLHTAAKERKKEAVRFLIENGAFLP 76
K A G+ PLH E++ + FL+E G F+P
Sbjct: 74 KRASGY-PLHYILGEKEFMGLSFLVEEGVFVP 104
>pdb|4EVF|A Chain A, Crystal Structure Of Apo Alpha-1 Giardin
pdb|4EVH|A Chain A, Crystal Structure Of Calcium-Bound Alpha-1 Giardin
Length = 295
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 28 EVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 80
+V D+ E IDA+ + + +A+ R+K A ++ G LPDDI
Sbjct: 3 KVTDIANELKQAIDAKDEVQIAFIASEYSAESREKIAKAYVASYGKELPDDIK 55
>pdb|1N8P|A Chain A, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|B Chain B, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|C Chain C, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|D Chain D, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
Length = 393
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 113 ETSYSSEKLNALSRLLVHMMPLLWLDLASDAVLSV 147
ETS++++ LN L +L+ L+W++ ++ L V
Sbjct: 120 ETSFTNDLLNDLPQLIKENTKLVWIETPTNPTLKV 154
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 17 PLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFL 68
P+H AA+ G L+ + VL GA +D R A G P+ A + ++ R+L
Sbjct: 81 PVHDAAREGFLDTLVVLHRAGARLDVRD--AWGRLPVDLAEELGHRDVARYL 130
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 26.2 bits (56), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 17 PLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFL 68
P+H AA+ G L+ + VL GA +D R A G P+ A + ++ R+L
Sbjct: 81 PVHDAAREGFLDTLVVLHRAGARLDVRD--AWGRLPVDLAEELGHRDVARYL 130
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 25.8 bits (55), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 14 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 73
G TPL LAA+ +++ L+ AD++A G + LH AA +A L++NGA
Sbjct: 15 GTTPLILAARLALEGMLEDLINSHADVNAVDD--LGKSALHWAAAVNNVDAAVVLLKNGA 72
Query: 74 FLPDDINDSRFNPPLHYCPSLEWAYE 99
D+ +++ PL + + E +YE
Sbjct: 73 --NKDMQNNKEETPL-FLAAREGSYE 95
>pdb|3V3T|A Chain A, Crystal Structure Of Clostridium Botulinum Phage C-St Tubz
Length = 360
Score = 25.8 bits (55), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Query: 9 GPKSKGVTP--LHLAAQ---GGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKE 63
G G+TP L LA Q H + VL + DID W + + E K
Sbjct: 100 GGAGSGITPPILGLAKQMYPNKHFGFVGVLPKATEDIDEHMNAIACWNDIMRSTNEGKDI 159
Query: 64 AVRFLIENGAFLPDDIN 80
++ L N DIN
Sbjct: 160 SIYLLDNNKREKESDIN 176
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,648,873
Number of Sequences: 62578
Number of extensions: 173592
Number of successful extensions: 853
Number of sequences better than 100.0: 121
Number of HSP's better than 100.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 306
Number of HSP's gapped (non-prelim): 363
length of query: 152
length of database: 14,973,337
effective HSP length: 90
effective length of query: 62
effective length of database: 9,341,317
effective search space: 579161654
effective search space used: 579161654
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)