Query 031812
Match_columns 152
No_of_seqs 120 out of 1028
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 08:45:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031812.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031812hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz6_M 40S ribosomal protein S 100.0 1.3E-71 4.4E-76 428.3 7.1 152 1-152 1-152 (152)
2 2xzm_M RPS18E; ribosome, trans 100.0 1.4E-70 4.7E-75 423.7 5.1 152 1-152 1-154 (155)
3 3j20_O 30S ribosomal protein S 100.0 2.1E-69 7.1E-74 414.5 3.7 146 7-152 2-147 (148)
4 3u5c_S 40S ribosomal protein S 100.0 5.8E-67 2E-71 400.1 9.9 144 1-144 1-146 (146)
5 2vqe_M 30S ribosomal protein S 100.0 8.9E-50 3E-54 298.6 3.7 111 12-144 1-111 (126)
6 3r8n_M 30S ribosomal protein S 100.0 3.3E-48 1.1E-52 285.8 5.7 109 13-144 1-109 (114)
7 3bbn_M Ribosomal protein S13; 100.0 3.4E-45 1.2E-49 278.7 -2.7 108 3-144 31-144 (145)
8 1k3x_A Endonuclease VIII; hydr 95.6 0.011 3.9E-07 47.9 4.4 51 23-73 150-203 (262)
9 1ee8_A MUTM (FPG) protein; bet 95.6 0.012 4E-07 48.0 4.5 52 22-73 142-196 (266)
10 1k82_A Formamidopyrimidine-DNA 95.5 0.012 4E-07 48.0 4.4 52 22-73 149-203 (268)
11 2xzf_A Formamidopyrimidine-DNA 95.5 0.012 4.1E-07 48.0 4.4 52 22-73 152-206 (271)
12 3u6p_A Formamidopyrimidine-DNA 95.5 0.012 4.2E-07 48.1 4.4 52 22-73 154-208 (273)
13 1mu5_A Type II DNA topoisomera 95.3 0.01 3.5E-07 52.0 3.5 49 26-74 256-304 (471)
14 3twl_A Formamidopyrimidine-DNA 95.3 0.016 5.4E-07 48.4 4.5 52 22-73 167-221 (310)
15 3w0f_A Endonuclease 8-like 3; 95.3 0.016 5.3E-07 48.1 4.3 51 23-73 174-227 (287)
16 3vk8_A Probable formamidopyrim 95.2 0.016 5.5E-07 47.9 4.2 52 22-73 153-208 (295)
17 1kft_A UVRC, excinuclease ABC 93.1 0.044 1.5E-06 36.0 2.1 33 17-49 13-45 (78)
18 2a1j_A DNA repair endonuclease 91.9 0.057 1.9E-06 34.7 1.3 37 29-67 5-41 (63)
19 3arc_U Photosystem II 12 kDa e 88.6 0.42 1.4E-05 33.4 3.7 51 23-73 21-74 (97)
20 3fut_A Dimethyladenosine trans 88.5 0.22 7.6E-06 40.2 2.5 64 7-73 206-269 (271)
21 1x2i_A HEF helicase/nuclease; 88.5 0.33 1.1E-05 30.8 2.8 50 25-74 11-69 (75)
22 1z00_A DNA excision repair pro 88.3 0.29 1E-05 32.7 2.6 50 26-75 17-75 (89)
23 1z00_B DNA repair endonuclease 87.3 0.15 5E-06 34.7 0.6 41 25-67 15-55 (84)
24 1tdh_A NEI endonuclease VIII-l 85.4 0.083 2.8E-06 45.1 -1.8 40 23-62 158-200 (364)
25 2duy_A Competence protein come 84.7 0.52 1.8E-05 30.5 2.3 45 25-69 24-71 (75)
26 1qyr_A KSGA, high level kasuga 84.4 0.52 1.8E-05 37.4 2.6 57 8-72 193-249 (252)
27 1s5l_U Photosystem II 12 kDa e 83.6 0.95 3.2E-05 33.6 3.5 51 23-73 58-111 (134)
28 3uzu_A Ribosomal RNA small sub 83.3 0.22 7.6E-06 40.3 -0.1 59 7-73 216-274 (279)
29 2zbk_B Type 2 DNA topoisomeras 82.6 1.3 4.6E-05 39.1 4.7 47 27-73 256-302 (530)
30 2a1j_B DNA excision repair pro 82.6 0.39 1.3E-05 32.3 1.0 25 25-49 29-53 (91)
31 3ftd_A Dimethyladenosine trans 79.4 1 3.5E-05 35.5 2.6 54 8-73 193-246 (249)
32 3fhg_A Mjogg, N-glycosylase/DN 77.6 1.4 4.7E-05 34.0 2.8 43 25-71 114-156 (207)
33 2edu_A Kinesin-like protein KI 75.2 2.7 9.4E-05 28.5 3.5 22 27-48 39-60 (98)
34 3q8k_A Flap endonuclease 1; he 72.4 2.1 7.3E-05 35.7 2.8 35 6-49 219-253 (341)
35 2nrt_A Uvrabc system protein C 72.2 1.4 4.7E-05 35.1 1.5 39 27-67 167-205 (220)
36 3tqs_A Ribosomal RNA small sub 71.6 0.82 2.8E-05 36.3 0.0 56 8-71 199-254 (255)
37 1ixr_A Holliday junction DNA h 71.1 1.6 5.4E-05 33.8 1.6 59 15-73 59-129 (191)
38 3n0u_A Probable N-glycosylase/ 70.8 1.9 6.5E-05 33.9 2.0 42 26-71 127-169 (219)
39 3fhf_A Mjogg, N-glycosylase/DN 70.6 1.9 6.4E-05 33.9 1.9 42 26-71 122-164 (214)
40 2ztd_A Holliday junction ATP-d 69.3 1.8 6.2E-05 34.1 1.6 59 15-73 75-145 (212)
41 1vq8_Y 50S ribosomal protein L 67.5 1.1 3.8E-05 35.9 0.0 27 29-56 16-42 (241)
42 3c65_A Uvrabc system protein C 66.9 1.2 4E-05 35.6 0.0 43 23-67 168-210 (226)
43 1cuk_A RUVA protein; DNA repai 66.7 2.1 7.2E-05 33.3 1.5 36 15-50 60-95 (203)
44 3ory_A Flap endonuclease 1; hy 66.0 3.3 0.00011 34.8 2.6 35 6-49 237-272 (363)
45 2ztd_A Holliday junction ATP-d 64.6 2.2 7.4E-05 33.6 1.2 22 28-49 123-144 (212)
46 1pu6_A 3-methyladenine DNA gly 63.8 2.6 8.9E-05 32.8 1.5 24 26-49 119-142 (218)
47 3gru_A Dimethyladenosine trans 61.1 1.8 6.2E-05 35.2 0.1 64 8-73 214-287 (295)
48 2ihm_A POL MU, DNA polymerase 61.0 5.7 0.00019 33.3 3.2 40 28-68 102-145 (360)
49 4e9f_A Methyl-CPG-binding doma 59.9 3.6 0.00012 30.8 1.6 36 9-47 88-123 (161)
50 2abk_A Endonuclease III; DNA-r 58.7 3.4 0.00012 31.7 1.3 23 26-48 107-129 (211)
51 1kg2_A A/G-specific adenine gl 58.1 3.7 0.00013 31.9 1.4 41 26-71 107-148 (225)
52 1jms_A Terminal deoxynucleotid 57.7 3.3 0.00011 35.1 1.2 40 28-68 121-165 (381)
53 1kea_A Possible G-T mismatches 57.5 6.1 0.00021 30.6 2.6 42 26-71 113-154 (221)
54 1orn_A Endonuclease III; DNA r 57.2 4.1 0.00014 31.8 1.5 25 26-50 111-136 (226)
55 1ixr_A Holliday junction DNA h 56.8 3.8 0.00013 31.6 1.3 22 28-49 107-128 (191)
56 3b0x_A DNA polymerase beta fam 56.7 3.9 0.00013 36.1 1.5 29 24-52 89-117 (575)
57 2eo2_A Adult MALE hypothalamus 55.9 11 0.00039 24.8 3.3 35 35-70 25-61 (71)
58 2h56_A DNA-3-methyladenine gly 55.7 4.3 0.00015 31.8 1.5 33 25-57 135-168 (233)
59 1cuk_A RUVA protein; DNA repai 55.0 4.5 0.00015 31.4 1.4 20 29-48 109-128 (203)
60 2fmp_A DNA polymerase beta; nu 55.0 4.6 0.00016 33.5 1.6 41 27-68 97-141 (335)
61 2bgw_A XPF endonuclease; hydro 54.6 4.8 0.00016 30.8 1.5 23 27-49 161-183 (219)
62 2gqf_A Hypothetical protein HI 54.4 6.5 0.00022 32.7 2.4 49 22-73 279-327 (401)
63 3v76_A Flavoprotein; structura 54.1 8.4 0.00029 32.3 3.1 49 22-73 298-346 (417)
64 1qam_A ERMC' methyltransferase 54.0 7.2 0.00025 30.1 2.5 31 43-73 211-241 (244)
65 2jhn_A ALKA, 3-methyladenine D 53.8 6.6 0.00022 31.8 2.3 32 26-58 208-240 (295)
66 1ul1_X Flap endonuclease-1; pr 53.2 6.4 0.00022 33.0 2.2 35 6-49 219-253 (379)
67 1mpg_A ALKA, 3-methyladenine D 52.8 4.7 0.00016 32.3 1.3 27 26-52 205-231 (282)
68 3s6i_A DNA-3-methyladenine gly 52.2 5.6 0.00019 31.2 1.6 33 26-58 137-170 (228)
69 4b21_A Probable DNA-3-methylad 52.2 5.6 0.00019 31.3 1.6 34 25-58 147-181 (232)
70 2yg9_A DNA-3-methyladenine gly 52.0 4.7 0.00016 31.5 1.1 24 25-48 143-166 (225)
71 3i0w_A 8-oxoguanine-DNA-glycos 50.8 5.3 0.00018 32.4 1.3 43 25-71 208-251 (290)
72 2zet_C Melanophilin; complex, 50.3 22 0.00076 26.3 4.6 21 53-73 11-31 (153)
73 3vdp_A Recombination protein R 49.1 8.9 0.0003 30.3 2.3 86 26-128 24-122 (212)
74 2bcq_A DNA polymerase lambda; 48.8 6.3 0.00022 32.7 1.5 27 25-52 93-119 (335)
75 3fsp_A A/G-specific adenine gl 46.6 6.4 0.00022 32.6 1.2 23 26-48 116-138 (369)
76 2xhi_A N-glycosylase/DNA lyase 46.0 6.8 0.00023 32.8 1.3 24 25-48 250-273 (360)
77 1b43_A Protein (FEN-1); nuclea 45.9 9.5 0.00033 31.3 2.1 36 6-49 223-258 (340)
78 4ecq_A DNA polymerase ETA; tra 45.9 15 0.00052 31.2 3.5 37 29-65 254-290 (435)
79 2izo_A FEN1, flap structure-sp 45.5 12 0.00041 30.8 2.7 36 6-49 220-255 (346)
80 1rxw_A Flap structure-specific 45.4 11 0.00038 30.9 2.4 35 6-49 222-256 (336)
81 2i5h_A Hypothetical protein AF 45.4 8.9 0.0003 30.2 1.7 20 28-47 132-151 (205)
82 1zbd_B Rabphilin-3A; G protein 45.2 15 0.00051 26.7 2.9 22 52-73 3-24 (134)
83 1a76_A Flap endonuclease-1 pro 44.5 13 0.00044 30.3 2.7 35 6-49 211-245 (326)
84 2w9m_A Polymerase X; SAXS, DNA 43.1 8.8 0.0003 33.9 1.6 26 25-51 94-119 (578)
85 1nd9_A Translation initiation 42.9 11 0.00037 21.6 1.5 41 30-71 8-48 (49)
86 1cyi_A Cytochrome C6, cytochro 42.2 8.3 0.00029 24.4 1.0 17 57-73 65-81 (90)
87 1vdd_A Recombination protein R 42.2 13 0.00044 29.7 2.2 42 24-73 8-49 (228)
88 3qe9_Y Exonuclease 1; exonucle 42.0 15 0.00051 30.6 2.7 36 5-49 211-246 (352)
89 4gfj_A Topoisomerase V; helix- 41.7 9.7 0.00033 33.8 1.6 23 27-49 467-489 (685)
90 2ee7_A Sperm flagellar protein 40.5 11 0.00039 27.2 1.6 35 57-94 10-44 (127)
91 2kp7_A Crossover junction endo 39.1 12 0.00041 25.2 1.4 19 30-48 60-78 (87)
92 3n5n_X A/G-specific adenine DN 37.3 11 0.00036 30.9 1.1 48 17-71 120-168 (287)
93 1exn_A 5'-exonuclease, 5'-nucl 37.0 15 0.00052 29.9 2.0 18 32-49 207-224 (290)
94 2bcq_A DNA polymerase lambda; 36.6 9.1 0.00031 31.7 0.6 32 29-60 58-89 (335)
95 1zq9_A Probable dimethyladenos 34.9 39 0.0013 26.5 4.1 33 40-73 247-279 (285)
96 1kx2_A Mono-heme C-type cytoch 33.2 30 0.001 21.6 2.6 17 57-73 63-79 (81)
97 3e1s_A Exodeoxyribonuclease V, 33.1 7.9 0.00027 34.2 -0.4 28 27-54 43-70 (574)
98 1wh7_A ZF-HD homeobox family p 32.6 15 0.00053 24.0 1.1 15 58-72 23-37 (80)
99 3bqs_A Uncharacterized protein 32.5 27 0.00092 23.8 2.4 23 29-52 5-27 (93)
100 1gks_A Cytochrome C551; haloph 32.4 29 0.00098 21.5 2.4 17 57-73 60-76 (78)
101 2dmp_A Zinc fingers and homeob 32.3 11 0.00036 25.2 0.2 19 55-73 16-34 (89)
102 2ihm_A POL MU, DNA polymerase 31.7 8.3 0.00029 32.3 -0.4 21 29-49 62-82 (360)
103 1im4_A DBH; DNA polymerase PAL 31.6 28 0.00095 26.8 2.6 28 30-61 186-213 (221)
104 2d0s_A Cytochrome C, cytochrom 31.3 33 0.0011 21.0 2.5 17 57-73 61-77 (79)
105 1cc5_A Cytochrome C5; electron 30.5 35 0.0012 21.6 2.6 16 58-73 67-82 (83)
106 2dn0_A Zinc fingers and homeob 30.3 29 0.001 22.0 2.2 24 50-73 6-29 (76)
107 1c6r_A Cytochrome C6; electron 30.3 21 0.00073 22.2 1.5 17 57-73 66-82 (89)
108 2fmp_A DNA polymerase beta; nu 30.1 5.5 0.00019 33.0 -1.8 21 29-49 58-78 (335)
109 1jx4_A DNA polymerase IV (fami 29.9 36 0.0012 27.7 3.2 35 30-65 180-214 (352)
110 1wh5_A ZF-HD homeobox family p 29.4 11 0.00038 24.6 -0.1 16 58-73 23-38 (80)
111 1c75_A Cytochrome C-553; heme, 28.6 41 0.0014 20.2 2.6 20 54-73 50-69 (71)
112 1jms_A Terminal deoxynucleotid 28.5 10 0.00035 32.0 -0.4 21 29-49 81-101 (381)
113 2cue_A Paired box protein PAX6 28.3 14 0.00046 23.9 0.2 17 57-73 12-28 (80)
114 2c8m_A Lipoate-protein ligase 27.9 25 0.00086 27.5 1.8 41 40-84 214-254 (262)
115 1uhs_A HOP, homeodomain only p 27.6 15 0.00051 23.1 0.3 15 58-72 7-21 (72)
116 2da5_A Zinc fingers and homeob 27.0 18 0.00061 23.1 0.6 19 55-73 10-28 (75)
117 2exv_A Cytochrome C-551; alpha 26.6 45 0.0015 20.3 2.5 16 58-73 65-80 (82)
118 1yz8_P Pituitary homeobox 2; D 26.3 34 0.0012 21.1 1.9 17 57-73 8-24 (68)
119 3bc1_B Synaptotagmin-like prot 26.3 53 0.0018 20.7 2.8 34 57-116 1-34 (59)
120 2cra_A Homeobox protein HOX-B1 26.2 11 0.00039 23.6 -0.5 17 57-73 12-28 (70)
121 1c53_A Cytochrome C553; electr 26.1 35 0.0012 20.9 2.0 17 57-73 62-78 (79)
122 3mfi_A DNA polymerase ETA; DNA 26.0 20 0.0007 31.4 1.0 29 28-56 307-335 (520)
123 3bq0_A POL IV, DBH, DNA polyme 25.9 35 0.0012 27.8 2.4 35 30-65 181-215 (354)
124 3ph2_B Cytochrome C6; photosyn 25.8 45 0.0015 20.3 2.4 17 57-73 64-80 (86)
125 1ayg_A Cytochrome C-552; elect 25.7 45 0.0015 20.4 2.4 19 55-73 60-78 (80)
126 2vi6_A Homeobox protein nanog; 25.5 12 0.00041 22.8 -0.4 16 58-73 9-24 (62)
127 2dmt_A Homeobox protein BARH-l 25.4 12 0.00042 24.1 -0.4 16 58-73 23-38 (80)
128 2da1_A Alpha-fetoprotein enhan 25.2 23 0.00078 22.0 0.9 18 56-73 11-28 (70)
129 2zxy_A Cytochrome C552, cytoch 25.0 46 0.0016 20.3 2.4 17 57-73 69-85 (87)
130 2djn_A Homeobox protein DLX-5; 24.9 32 0.0011 21.4 1.5 17 57-73 12-28 (70)
131 4dez_A POL IV 1, DNA polymeras 24.7 34 0.0011 27.9 2.0 37 29-66 179-215 (356)
132 1ci4_A Protein (barrier-TO-aut 24.6 46 0.0016 22.8 2.4 24 28-52 18-41 (89)
133 1vqz_A Lipoate-protein ligase, 24.2 57 0.002 26.8 3.4 44 39-87 212-255 (341)
134 1ls9_A Cytochrome C6; omega lo 24.0 50 0.0017 20.6 2.4 17 57-73 68-84 (91)
135 2i0z_A NAD(FAD)-utilizing dehy 23.9 73 0.0025 26.3 4.0 38 36-73 331-368 (447)
136 3dmi_A Cytochrome C6; electron 23.7 52 0.0018 20.2 2.4 16 58-73 66-81 (88)
137 3k2a_A Homeobox protein MEIS2; 23.5 28 0.00096 21.7 1.1 15 58-72 4-18 (67)
138 1dgs_A DNA ligase; AMP complex 23.5 22 0.00075 32.4 0.7 34 32-65 445-478 (667)
139 2hdd_A Protein (engrailed home 23.4 32 0.0011 20.7 1.3 17 57-73 8-24 (61)
140 3dr0_A Cytochrome C6; photosyn 23.4 48 0.0016 20.4 2.2 17 57-73 70-86 (93)
141 1a56_A C-551, ferricytochrome 23.2 38 0.0013 20.8 1.7 17 57-73 63-79 (81)
142 1bgx_T TAQ DNA polymerase; DNA 22.8 18 0.00063 33.6 0.1 37 6-49 176-212 (832)
143 3o0r_C Nitric oxide reductase 22.8 46 0.0016 22.9 2.2 31 54-84 112-142 (146)
144 1f1f_A Cytochrome C6; heme, pr 22.8 56 0.0019 20.1 2.4 17 57-73 67-83 (89)
145 1cno_A Cytochrome C552; electr 22.7 57 0.0019 20.3 2.5 17 57-73 65-81 (87)
146 1gdv_A Cytochrome C6; RED ALGA 22.7 56 0.0019 19.8 2.4 16 58-73 64-79 (85)
147 1yub_A Ermam, rRNA methyltrans 22.6 41 0.0014 25.4 2.1 29 45-73 212-240 (245)
148 1k61_A Mating-type protein alp 22.4 42 0.0014 20.0 1.7 16 58-73 4-19 (60)
149 2bgw_A XPF endonuclease; hydro 22.4 31 0.0011 26.1 1.3 21 29-49 195-215 (219)
150 2da7_A Zinc finger homeobox pr 22.3 9.6 0.00033 25.2 -1.4 30 58-88 29-58 (71)
151 1nk2_P Homeobox protein VND; h 22.2 15 0.00052 23.4 -0.4 17 57-73 14-30 (77)
152 2hi3_A Homeodomain-only protei 22.2 16 0.00054 23.1 -0.4 15 58-72 8-22 (73)
153 1akh_A Protein (mating-type pr 22.0 29 0.001 20.8 0.9 16 58-73 11-26 (61)
154 1ahd_P Antennapedia protein mu 21.8 29 0.001 21.5 0.9 16 58-73 8-23 (68)
155 2dmu_A Homeobox protein goosec 21.7 30 0.001 21.5 0.9 17 57-73 12-28 (70)
156 2kt0_A Nanog, homeobox protein 21.7 16 0.00056 23.6 -0.4 17 57-73 27-43 (84)
157 3a02_A Homeobox protein arista 21.4 31 0.0011 20.7 0.9 15 59-73 6-20 (60)
158 3cu4_A Cytochrome C family pro 21.3 58 0.002 20.0 2.3 16 58-73 67-82 (85)
159 3a03_A T-cell leukemia homeobo 21.3 31 0.0011 20.5 0.9 15 59-73 4-18 (56)
160 3ivp_A Putative transposon-rel 21.2 1E+02 0.0035 20.6 3.7 20 35-54 51-70 (126)
161 2e1o_A Homeobox protein PRH; D 21.2 31 0.0011 21.4 0.9 17 57-73 12-28 (70)
162 3osn_A DNA polymerase IOTA; ho 21.1 33 0.0011 29.0 1.3 35 30-65 236-270 (420)
163 2dmq_A LIM/homeobox protein LH 21.1 31 0.0011 21.9 0.9 17 57-73 12-28 (80)
164 2dmn_A Homeobox protein TGIF2L 21.1 61 0.0021 20.9 2.4 20 54-73 9-28 (83)
165 1bw5_A ISL-1HD, insulin gene e 20.9 53 0.0018 20.0 2.0 17 57-73 8-24 (66)
166 3exc_X Uncharacterized protein 20.9 16 0.00056 24.7 -0.5 53 9-73 1-56 (91)
167 2da2_A Alpha-fetoprotein enhan 20.6 32 0.0011 21.2 0.9 17 57-73 12-28 (70)
168 2r5y_A Homeotic protein sex co 20.6 24 0.00081 23.1 0.3 18 56-73 32-49 (88)
169 2owo_A DNA ligase; protein-DNA 20.4 44 0.0015 30.5 2.0 36 31-66 449-484 (671)
170 1wve_C 4-cresol dehydrogenase 20.4 67 0.0023 19.8 2.4 17 57-73 56-72 (80)
171 1cch_A Cytochrome C551; electr 20.2 65 0.0022 19.4 2.3 16 58-73 65-80 (82)
172 3rkq_A Homeobox protein NKX-2. 20.2 47 0.0016 19.4 1.6 16 58-73 8-23 (58)
173 2o3f_A Putative HTH-type trans 20.2 53 0.0018 22.4 2.0 24 29-52 44-67 (111)
No 1
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.3e-71 Score=428.29 Aligned_cols=152 Identities=89% Similarity=1.371 Sum_probs=150.8
Q ss_pred CCCCCccchhhhhhhcCcccCCCeEeeeeeccccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCCCCccCC
Q 031812 1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIP 80 (152)
Q Consensus 1 ~~~~~~~~~~~~vri~~~~l~~~k~v~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~~L~~~i~~~~~~~ip 80 (152)
|||+.+|+|+||+||+|||||++|+|.+|||+|||||+++|..||+++||||++++++||++|+++|.++|++|.+|.||
T Consensus 1 ~~~~~~~~~~~m~RI~g~~i~~~k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~~~~~~~ip 80 (152)
T 3iz6_M 1 MSLIAGEEFQHILRVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHNPRQFKVP 80 (152)
T ss_dssp CCCCTTCSCCCCCCTTTTCCCCSSBHHHHHTTSTTCCHHHHHHHHHHHTCCSSSBTTTSCHHHHHHHHHHHHSCSSCCCC
T ss_pred CCcccHHHHHHHHHHcCCcCCCCcEeHhhhhhccCcCHHHHHHHHHHcCCCCCcEeCcCCHHHHHHHHHHHHhhcccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999899999
Q ss_pred cccccccCCcCCCcceeeehhhHHHHHHHhHHHhHhhceeecccCCCCCccCCcCCcccCCCccceeeeccC
Q 031812 81 DWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152 (152)
Q Consensus 81 ~w~~nr~~d~~tg~~~~~i~~dL~~~~~~~I~rl~~I~syRG~RH~~gLPVRGQRTrTNart~~~~gv~~~k 152 (152)
+||+|||+|++||++.|++++||++++++||+||++|+||||+||.+||||||||||||||||+||||+|||
T Consensus 81 ~w~lNr~kD~~~G~~~~li~~dL~~~~~~dI~RL~~I~~yRG~RH~~GLpVRGQrTkTnaRtg~tvgv~kkk 152 (152)
T 3iz6_M 81 DWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHYWGVRVRGQHTKTTGRRGKTVGVSKKR 152 (152)
T ss_dssp CCSCSCCCSCCCCSCCTTCTHHHHHHHHHHHHHHHHHTCHHHHHHHHTCCSSCCCCSSCCHHHHCSCCSSCC
T ss_pred hhhhhhhcccCCcceeeechhHHHHHHHHhHHHHhhhheeecccccCCCCcCCcCCcCCCCCceecceecCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997
No 2
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=100.00 E-value=1.4e-70 Score=423.74 Aligned_cols=152 Identities=55% Similarity=0.948 Sum_probs=149.6
Q ss_pred CCCCCcc--chhhhhhhcCcccCCCeEeeeeeccccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCCCCcc
Q 031812 1 MSLVANE--DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFK 78 (152)
Q Consensus 1 ~~~~~~~--~~~~~vri~~~~l~~~k~v~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~~L~~~i~~~~~~~ 78 (152)
|||+.++ +|+||+||+|||||++|+|.+|||+|||||+++|..||+++||||++++++||++|+++|.++|++|.+|.
T Consensus 1 m~~~~~~~~~f~~m~RI~g~~l~~~k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i~~p~~~~ 80 (155)
T 2xzm_M 1 MSFVIEKESDFKYIHRILNTNIDGKRITPIALTGIRGIGRRFAYIICKVLKIDPNARAGLLTEDQCNKITDLIADPEAHG 80 (155)
T ss_dssp CCCCSSTTTSSCSCCEETTTEECCSSCHHHHHTTSTTCCHHHHHHHHHHTTCCSSSCSSCSCHHHHHHHHHHHHSHHHHC
T ss_pred CCccccchHhhhhhHheeCccCCCCCEEEEeeecccccCHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHhCccccC
Confidence 8998766 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccCCcCCCcceeeehhhHHHHHHHhHHHhHhhceeecccCCCCCccCCcCCcccCCCccceeeeccC
Q 031812 79 IPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152 (152)
Q Consensus 79 ip~w~~nr~~d~~tg~~~~~i~~dL~~~~~~~I~rl~~I~syRG~RH~~gLPVRGQRTrTNart~~~~gv~~~k 152 (152)
||+||+|||+|++||+|.|+||+||++++++||+||++|+||||+||++||||||||||||||||+||||+|||
T Consensus 81 iP~w~lNr~kD~~~G~~~~~ie~dLr~~~~~dI~Rl~~I~~yRG~RH~~GLpVRGQRTkTnaRtg~tvGv~kkk 154 (155)
T 2xzm_M 81 IPTWLLNRINDFKDGKNYQMASNTLDTKMREDLERLKKIKSHRGLRHFWGLKVRGQHTKTSGRHGVVCGVVRKN 154 (155)
T ss_dssp CCGGGCSEEEETTTEEEECCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHTCCSSSCCCSSSSCSSCCCSSCCCC
T ss_pred CCHHHhhcccccCCCceeEEecHHHHHHHHHhHHHHhhhceeeeeecccCCCcCCcCCccCCCCcccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987
No 3
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=2.1e-69 Score=414.48 Aligned_cols=146 Identities=44% Similarity=0.801 Sum_probs=144.0
Q ss_pred cchhhhhhhcCcccCCCeEeeeeeccccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCCCCccCCcccccc
Q 031812 7 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNR 86 (152)
Q Consensus 7 ~~~~~~vri~~~~l~~~k~v~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~~L~~~i~~~~~~~ip~w~~nr 86 (152)
++|+||+||+|||||++|+|.+|||+|||||+++|..||+++||||++++++||++|+++|.++|++|.+|+||+||+||
T Consensus 2 ~~~~~m~RI~g~~i~~~k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~i~~~i~~~~~~~iP~w~lNr 81 (148)
T 3j20_O 2 ANFRHIVRVAGVDLDGNKQLRWALTAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILADPVAHGIPRWAVNR 81 (148)
T ss_dssp CCBCSCEECSSSCEECSSCHHHHHHHSTTCCHHHHHHHHHHHTCCSSSCTTBCCHHHHHHHHHHHHCHHHHCCCTTTSSE
T ss_pred hhhhHhHHHcCccCCCCCEehhhhhhccCcCHHHHHHHHHHhCCCCCceeccCCHHHHHHHHHHHhcccccCCChhhhcc
Confidence 67999999999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred cCCcCCCcceeeehhhHHHHHHHhHHHhHhhceeecccCCCCCccCCcCCcccCCCccceeeeccC
Q 031812 87 QKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152 (152)
Q Consensus 87 ~~d~~tg~~~~~i~~dL~~~~~~~I~rl~~I~syRG~RH~~gLPVRGQRTrTNart~~~~gv~~~k 152 (152)
|+|++||++.|+||+||++++++||+||++|+||||+||.+||||||||||||||||+||||+|||
T Consensus 82 ~kD~~~G~~~~~ve~dL~~~~~~dI~RL~~I~~yRG~RH~~GLpVRGQrTkTnaR~g~tvgv~kkk 147 (148)
T 3j20_O 82 PKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRGQRTRSNFRRGQTVGVSRKK 147 (148)
T ss_dssp EEETTTEEEECCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHTCCSSSCCCSSCSCSSCCCCCSSCC
T ss_pred cCCCCCCceeEEechHHHHHHHHHHHHHHHhCcEEeecccCCCcCCCCCCcCCCCcCcccceeccC
Confidence 999999999999999999999999999999999999999999999999999999999999999987
No 4
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=100.00 E-value=5.8e-67 Score=400.14 Aligned_cols=144 Identities=66% Similarity=1.126 Sum_probs=140.7
Q ss_pred CCCCCcc--chhhhhhhcCcccCCCeEeeeeeccccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCCCCcc
Q 031812 1 MSLVANE--DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFK 78 (152)
Q Consensus 1 ~~~~~~~--~~~~~vri~~~~l~~~k~v~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~~L~~~i~~~~~~~ 78 (152)
|||+.++ +|+||+||+|||||++|+|.+|||+|||||+++|..||+++||||++++++||++|+++|.++|++|.+|+
T Consensus 1 ~~~~~~~~~~~~~~~RI~g~~i~~~k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~~~~~~~ 80 (146)
T 3u5c_S 1 MSLVVQEQGSFQHILRLLNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQNPTHYK 80 (146)
T ss_dssp -CCCCCCCSCCCSSBCCTTSCBCSSSCTTTTGGGSTTCCHHHHHHHHHHHTCCTTSCSSSCCHHHHHHHHHHHTCTTTTT
T ss_pred CCccCCCHHHhhhhhhhcCccCCCCcchHhhHhhhcCCCHHHHHHHHHHcCCCCCceeccCCHHHHHHHHHHHHhhcccC
Confidence 8999876 89999999999999999999999999999999999999999999999999999999999999999998999
Q ss_pred CCcccccccCCcCCCcceeeehhhHHHHHHHhHHHhHhhceeecccCCCCCccCCcCCcccCCCcc
Q 031812 79 IPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGK 144 (152)
Q Consensus 79 ip~w~~nr~~d~~tg~~~~~i~~dL~~~~~~~I~rl~~I~syRG~RH~~gLPVRGQRTrTNart~~ 144 (152)
||+||+|||+|++||++.|++|+||++++++||+||++|+||||+||.+||||||||||||||+|+
T Consensus 81 iP~w~lNR~kD~~~G~~~~lie~dL~~~~~~dI~RL~~I~~yRG~RH~~GLpVRGQrTkTnaR~g~ 146 (146)
T 3u5c_S 81 IPAWFLNRQNDITDGKDYHTLANNVESKLRDDLERLKKIRAHRGIRHFWGLRVRGQHTKTTGRRRA 146 (146)
T ss_dssp CCSTTCTBCSCSSSCCCBCCCTHHHHHHHHHHHHHHHHHTCHHHHHHHTTCCCSCCCCSSSCCSCC
T ss_pred ccHHHhhhhhcccccchheeehHHHHHHHHHhhHHHHhhceeeeecccCCCCCCccCCCcCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999985
No 5
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=100.00 E-value=8.9e-50 Score=298.58 Aligned_cols=111 Identities=32% Similarity=0.486 Sum_probs=106.2
Q ss_pred hhhhcCcccCCCeEeeeeeccccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCCCCccCCcccccccCCcC
Q 031812 12 ILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYK 91 (152)
Q Consensus 12 ~vri~~~~l~~~k~v~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~~L~~~i~~~~~~~ip~w~~nr~~d~~ 91 (152)
|+||+|||||++|.|.+|||+|||||+++|..||+++||||++++++||++|+++|.++|++ +|
T Consensus 1 m~rI~g~~i~~~k~v~~aLt~I~GIG~~~A~~I~~~~gi~~~~r~~~Lt~~ei~~l~~~i~~--~~-------------- 64 (126)
T 2vqe_M 1 MARIAGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVEN--TW-------------- 64 (126)
T ss_dssp -CCCSTTCCCCSSBHHHHHTTSSSCCSHHHHHHTTTTTCCTTSBGGGCCHHHHHHHHHHHHT--TS--------------
T ss_pred CceEeCccCCCCcEeeeehhccccccHHHHHHHHHHcCCCcccccCcCCHHHHHHHHHHHHH--hC--------------
Confidence 89999999999999999999999999999999999999999999999999999999999986 24
Q ss_pred CCcceeeehhhHHHHHHHhHHHhHhhceeecccCCCCCccCCcCCcccCCCcc
Q 031812 92 DGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGK 144 (152)
Q Consensus 92 tg~~~~~i~~dL~~~~~~~I~rl~~I~syRG~RH~~gLPVRGQRTrTNart~~ 144 (152)
++|+||++++++||+||++|+||||+||.+|||||||||||||||++
T Consensus 65 ------~ve~dLrr~~~~nIkRL~~I~~YRG~RH~~GLPVRGQRTkTNaRTrk 111 (126)
T 2vqe_M 65 ------KLEGELRAEVAANIKRLMDIGCYRGLRHRRGLPVRGQRTRTNARTRK 111 (126)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSSSCCCSSCCHHHH
T ss_pred ------cchhHHHHHHHHHHHHHHHHHHHhhhhhccCCcCCCccCccccccCC
Confidence 46999999999999999999999999999999999999999999875
No 6
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=100.00 E-value=3.3e-48 Score=285.83 Aligned_cols=109 Identities=34% Similarity=0.505 Sum_probs=104.9
Q ss_pred hhhcCcccCCCeEeeeeeccccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCCCCccCCcccccccCCcCC
Q 031812 13 LRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKD 92 (152)
Q Consensus 13 vri~~~~l~~~k~v~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~~L~~~i~~~~~~~ip~w~~nr~~d~~t 92 (152)
.||+|||||++|+|.+|||+|||||+++|..||+++||||++++++||++|+++|.++|++ |.+
T Consensus 1 ~RI~g~~i~~~k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i~~---~~i------------- 64 (114)
T 3r8n_M 1 ARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAK---FVV------------- 64 (114)
T ss_dssp CCTTSSCCCCSSCHHHHGGGSTTCCHHHHHHHHHHTTCCTTCCSTTCCHHHHHHHHHHHSS---SCT-------------
T ss_pred CeeCCccCCCCCEeHhhHhhhcCcCHHHHHHHHHHcCcCcccCcccCCHHHHHHHHHHHHH---hcc-------------
Confidence 4899999999999999999999999999999999999999999999999999999999954 654
Q ss_pred CcceeeehhhHHHHHHHhHHHhHhhceeecccCCCCCccCCcCCcccCCCcc
Q 031812 93 GRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGK 144 (152)
Q Consensus 93 g~~~~~i~~dL~~~~~~~I~rl~~I~syRG~RH~~gLPVRGQRTrTNart~~ 144 (152)
|+||++++++||+||++|+||||+||.+|||||||||||||||+|
T Consensus 65 -------e~dLr~~~~~dI~RL~~I~~yRG~RH~~GLpVRGQrTkTnaRTrk 109 (114)
T 3r8n_M 65 -------EGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRK 109 (114)
T ss_dssp -------THHHHHHHHHHHHHHHHHTCHHHHHHHTTSCCSSCCSSSCCHHHH
T ss_pred -------hHHHHHHHHHHHHHHHHhceeeeecccCCCCCCCCCCCCcccccC
Confidence 799999999999999999999999999999999999999999986
No 7
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=3.4e-45 Score=278.69 Aligned_cols=108 Identities=31% Similarity=0.402 Sum_probs=92.7
Q ss_pred CCCccchh------hhhhhcCcccCCCeEeeeeeccccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCCCC
Q 031812 3 LVANEDFQ------HILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQ 76 (152)
Q Consensus 3 ~~~~~~~~------~~vri~~~~l~~~k~v~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~~L~~~i~~~~~ 76 (152)
...+++|+ ||+||+|||||++|.|.+|||+|||||+.+|.+||+++|| |++++++|||+|+++|.++
T Consensus 31 ~~~~~~~~~~~~~~~m~RI~gvdlp~~K~v~~aLt~IyGIG~~~A~~I~~~~gI-~~~rv~~Lte~ei~~l~~~------ 103 (145)
T 3bbn_M 31 APKKGGIGHGGLQIECIRIGGVEIPNHKRVEYSLQYIHGIGRSRSRQILLDLNF-DNKVTKDLSEEEVIILRKE------ 103 (145)
T ss_dssp ----------------CCCSSSCCCCSSBTTTGGGGSTTCCSSTTTGGGTTTTC-CSCBTTSCCSSTTHHHHSS------
T ss_pred cCCchhhhcccchhheeeEeCcccCCCCEEEEeeeeecCccHHHHHHHHHHcCC-CceEcCCCCHHHHHHHHHH------
Confidence 33457899 8999999999999999999999999999999999999999 7999999999999998864
Q ss_pred ccCCcccccccCCcCCCcceeeehhhHHHHHHHhHHHhHhhceeecccCCCCCccCCcCCcccCCCcc
Q 031812 77 FKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGK 144 (152)
Q Consensus 77 ~~ip~w~~nr~~d~~tg~~~~~i~~dL~~~~~~~I~rl~~I~syRG~RH~~gLPVRGQRTrTNart~~ 144 (152)
++++++||+||++|+||||+||.+|||||||||||||||+|
T Consensus 104 ---------------------------Rr~v~~nIkRL~~I~~YRGlRH~~GLPVRGQRTkTNaRTrK 144 (145)
T 3bbn_M 104 ---------------------------KRFNRVAIERLKEIRCYRGIRHKLGLPVRGQRTKNNCRTLK 144 (145)
T ss_dssp ---------------------------CCCCSTTTHHHHCCCCSCCTTTTTTCCSSSCCTTTCCCSSC
T ss_pred ---------------------------HHHHHHHHHHHhhhceEeeeecccCCcCCCccCccccccCC
Confidence 22358999999999999999999999999999999999976
No 8
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=95.59 E-value=0.011 Score=47.89 Aligned_cols=51 Identities=24% Similarity=0.308 Sum_probs=44.3
Q ss_pred CeEeeeee---ccccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 031812 23 KQKIMFAL---TSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVAN 73 (152)
Q Consensus 23 ~k~v~~aL---t~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~~L~~~i~~ 73 (152)
+.+|..+| +-|-|||...|..+|-++||+|..++++|+++|++.|-+.+..
T Consensus 150 ~~~Ik~~LLDQ~vvaGiGNiYadEiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~~ 203 (262)
T 1k3x_A 150 NRQFAGLLLDQAFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLE 203 (262)
T ss_dssp TSCHHHHTTCTTTSBTCCHHHHHHHHHHHTCCSSCCGGGSCHHHHHHHHHHHHH
T ss_pred cccHHHHHhcCCeeecccHHHHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHHH
Confidence 36676677 3379999999999999999999999999999999998887753
No 9
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=95.57 E-value=0.012 Score=47.98 Aligned_cols=52 Identities=17% Similarity=0.186 Sum_probs=45.2
Q ss_pred CCeEeeeee---ccccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 031812 22 GKQKIMFAL---TSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVAN 73 (152)
Q Consensus 22 ~~k~v~~aL---t~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~~L~~~i~~ 73 (152)
.+.+|..+| +-|-|||...|..+|-++||+|..++++|+++|++.|-+.+..
T Consensus 142 ~~~~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~~~~Ls~~~~~~L~~~i~~ 196 (266)
T 1ee8_A 142 SARPLKALLLDQRLAAGVGNIYADEALFRARLSPFRPARSLTEEEARRLYRALRE 196 (266)
T ss_dssp CCSBHHHHHHHSSSSTTCCHHHHHHHHHHTTCCSSSBGGGCCHHHHHHHHHHHHH
T ss_pred CCccHHHHHhccCccccccHhHHHHHHHHcCCCCCCCcccCCHHHHHHHHHHHHH
Confidence 356777777 4489999999999999999999999999999999998877643
No 10
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=95.55 E-value=0.012 Score=48.01 Aligned_cols=52 Identities=27% Similarity=0.232 Sum_probs=45.4
Q ss_pred CCeEeeeee---ccccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 031812 22 GKQKIMFAL---TSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVAN 73 (152)
Q Consensus 22 ~~k~v~~aL---t~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~~L~~~i~~ 73 (152)
.+.+|..+| +-|-|||...|..+|-++||+|..++++|+++|++.|-+.+..
T Consensus 149 ~~~~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~~ 203 (268)
T 1k82_A 149 KKTAIKPWLMDNKLVVGVGNIYASESLFAAGIHPDRLASSLSLAECELLARVIKA 203 (268)
T ss_dssp CCSBHHHHHTCTTTCSSCCHHHHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHhcCCeeeccCchHHHHHHHHcCCCCCCCcccCCHHHHHHHHHHHHH
Confidence 456777777 4489999999999999999999999999999999998887653
No 11
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=95.53 E-value=0.012 Score=47.96 Aligned_cols=52 Identities=21% Similarity=0.239 Sum_probs=45.2
Q ss_pred CCeEeeeee---ccccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 031812 22 GKQKIMFAL---TSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVAN 73 (152)
Q Consensus 22 ~~k~v~~aL---t~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~~L~~~i~~ 73 (152)
.+.+|..+| +-|-|||...|..+|-++||+|..++++|+++|++.|-+.+..
T Consensus 152 ~~~~IK~~LLDQ~vvaGiGNiYadEiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~~ 206 (271)
T 2xzf_A 152 STKKIKPYLLEQTLVAGLGNIYVDEVLWLAKIHPEKETNQLIESSIHLLHDSIIE 206 (271)
T ss_dssp CCSBHHHHHHTSSSSSCCCHHHHHHHHHHTTCCTTCBGGGCCHHHHHHHHHHHHH
T ss_pred CCccHHHHHhcCCeecccChhHHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHHH
Confidence 356777777 4489999999999999999999999999999999998877653
No 12
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=95.51 E-value=0.012 Score=48.08 Aligned_cols=52 Identities=21% Similarity=0.264 Sum_probs=45.8
Q ss_pred CCeEeeeee---ccccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 031812 22 GKQKIMFAL---TSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVAN 73 (152)
Q Consensus 22 ~~k~v~~aL---t~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~~L~~~i~~ 73 (152)
.+.+|..+| +-|-|||...|..+|-++||+|..++++|+++|++.|-+.+..
T Consensus 154 ~~~~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~~~~Ls~~~~~~L~~~i~~ 208 (273)
T 3u6p_A 154 TKRSVKALLLDCTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVA 208 (273)
T ss_dssp CCSBHHHHHHCTTTSTTCCHHHHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred CcchHHHHHhcCCccccccHHHHHHHHHHcCCCccCccccCCHHHHHHHHHHHHH
Confidence 466777777 4589999999999999999999999999999999998888753
No 13
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=95.34 E-value=0.01 Score=51.96 Aligned_cols=49 Identities=20% Similarity=0.312 Sum_probs=44.3
Q ss_pred eeeeeccccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCC
Q 031812 26 IMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANP 74 (152)
Q Consensus 26 v~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~~L~~~i~~~ 74 (152)
..|.-..+-+||..+|..||+.+|++|+++..+|+.+|+..|.+.+.+.
T Consensus 256 ~~fl~~~f~~v~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 304 (471)
T 1mu5_A 256 KEFLVNEFQSIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETFKKY 304 (471)
T ss_dssp HHHHTTSSSSCCHHHHHHHHHHTTCCTTSBGGGCCTTHHHHHHHHHHHC
T ss_pred HHhhhccccccCHHHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHHHhc
Confidence 3455567999999999999999999999999999999999999999874
No 14
>3twl_A Formamidopyrimidine-DNA glycosylase 1; helix two turns helix, zinc-LESS finger, hydrolase, DNA DAMA repair, DNA-binding, glycosidase, lyase; 1.70A {Arabidopsis thaliana} PDB: 3twm_A* 3twk_A
Probab=95.32 E-value=0.016 Score=48.36 Aligned_cols=52 Identities=27% Similarity=0.277 Sum_probs=45.2
Q ss_pred CCeEeeeeec---cccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 031812 22 GKQKIMFALT---SIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVAN 73 (152)
Q Consensus 22 ~~k~v~~aLt---~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~~L~~~i~~ 73 (152)
.+.+|..+|. -|-|||...|..+|-++||+|..++++|+++|++.|-+.+..
T Consensus 167 ~~~~IK~~LLDQ~vvaGIGNiYadEiLf~AgIhP~~~a~~Ls~~e~~~L~~~i~~ 221 (310)
T 3twl_A 167 KKITIKPLLLDQGYISGIGNWIADEVLYQARIHPLQTASSLSKEQCEALHTSIKE 221 (310)
T ss_dssp CCSBHHHHHHCTTTSBSCCHHHHHHHHHHTTCCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred CcchHHHHHhcCccccCCcHHHHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHHH
Confidence 4667777773 389999999999999999999999999999999998777643
No 15
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=95.27 E-value=0.016 Score=48.13 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=45.5
Q ss_pred CeEeeeee---ccccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 031812 23 KQKIMFAL---TSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVAN 73 (152)
Q Consensus 23 ~k~v~~aL---t~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~~L~~~i~~ 73 (152)
+.+|..+| +-|-|||...|..+|-++||+|..++++|+++|++.|-+.+.+
T Consensus 174 ~~~IK~~LLDQ~viaGiGNIYa~EiLf~AgI~P~~~~~~Ls~~~~~~L~~ai~~ 227 (287)
T 3w0f_A 174 DRMLCDVLLDQRVLPGVGNIIKNEALFDSGLHPAVKVCQLSDKQACHLVKMTRD 227 (287)
T ss_dssp SSBHHHHHHCTTTSTTCCHHHHHHHHHHHTCCTTCBGGGSCHHHHHHHHHHHHH
T ss_pred cccHHHHHhcCCccccccHHHHHHHHHHccCCccCccccCCHHHHHHHHHHHHH
Confidence 45676666 4489999999999999999999999999999999999999864
No 16
>3vk8_A Probable formamidopyrimidine-DNA glycosylase; DNA glycosylase, hneil1 ortholog, DNA lesion, thymine glycol zincless finger; HET: DNA CTG; 2.00A {Acanthamoeba polyphaga mimivirus} PDB: 3vk7_A* 3a42_A 3a46_A* 3a45_A*
Probab=95.22 E-value=0.016 Score=47.93 Aligned_cols=52 Identities=25% Similarity=0.314 Sum_probs=44.8
Q ss_pred CCeEeeeee---cc-ccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 031812 22 GKQKIMFAL---TS-IKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVAN 73 (152)
Q Consensus 22 ~~k~v~~aL---t~-I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~~L~~~i~~ 73 (152)
.+.+|..+| +- |-|||...|..||=+++|+|..++++|+++|++.|-+.+..
T Consensus 153 ~~~~Ik~~LLDQ~~~vaGIGNiYa~EiLf~A~I~P~~~~~~Ls~~~~~~L~~~i~~ 208 (295)
T 3vk8_A 153 YKQPIVALLMDQKKIGSGLGNYLVAEILYRAKIDPHKLGSNLTDQEIENLWYWIKY 208 (295)
T ss_dssp CCSBHHHHHHCSSSSCBCCCHHHHHHHHHHTTBCTTCBGGGCCHHHHHHHHHHHHH
T ss_pred cCchHHHHHhcCCcccccccHHHHHHHHHHcCCCccCccccCCHHHHHHHHHHHHH
Confidence 455666666 34 89999999999999999999999999999999998887753
No 17
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=93.07 E-value=0.044 Score=36.05 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=21.9
Q ss_pred CcccCCCeEeeeeeccccccchhhHHHHHHHhC
Q 031812 17 NTNVDGKQKIMFALTSIKGIGRRLANIVCKKAD 49 (152)
Q Consensus 17 ~~~l~~~k~v~~aLt~I~GIG~~~A~~Ic~~lg 49 (152)
|.-++.+.....+|..|+|||+.+|..|++.+|
T Consensus 13 ~~~~~~~~~~~~~L~~I~gIG~~~A~~Ll~~fg 45 (78)
T 1kft_A 13 GLVPRGSHMNTSSLETIEGVGPKRRQMLLKYMG 45 (78)
T ss_dssp ----------CCGGGGCTTCSSSHHHHHHHHHS
T ss_pred hHHHhHHHHHHHHHhcCCCCCHHHHHHHHHHcC
Confidence 445666777889999999999999999999976
No 18
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=91.88 E-value=0.057 Score=34.65 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=31.1
Q ss_pred eeccccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHH
Q 031812 29 ALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQL 67 (152)
Q Consensus 29 aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~~L 67 (152)
.|..|+|||+..+..+++.+| .-..+.+.|.+|+..+
T Consensus 5 ~L~~IpGIG~kr~~~LL~~Fg--s~~~i~~As~eeL~~v 41 (63)
T 2a1j_A 5 FLLKMPGVNAKNCRSLMHHVK--NIAELAALSQDELTSI 41 (63)
T ss_dssp HHHTSTTCCHHHHHHHHHHCS--SHHHHHTCCHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHHcC--CHHHHHHCCHHHHHHH
Confidence 578999999999999999988 4456777888888776
No 19
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=88.62 E-value=0.42 Score=33.36 Aligned_cols=51 Identities=16% Similarity=0.160 Sum_probs=38.0
Q ss_pred CeEeeeeeccccccchhhHHHHHHHhCCC---CCCcCCCCCHHHHHHHHHHHhC
Q 031812 23 KQKIMFALTSIKGIGRRLANIVCKKADVD---MNKRAGELSAAELDQLMVVVAN 73 (152)
Q Consensus 23 ~k~v~~aLt~I~GIG~~~A~~Ic~~lgi~---~~~kv~~Ls~~qi~~L~~~i~~ 73 (152)
|..=...|+.++|||+.+|.+|.+.=.+. .-.++.-+.+..+++|..+++.
T Consensus 21 NtAs~~eL~~lpGIG~~~A~~IV~~GpF~s~edL~~V~Gig~~~~e~l~~~l~~ 74 (97)
T 3arc_U 21 NNTNIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNIPGLTERQKQILRENLEH 74 (97)
T ss_dssp TTSCGGGGGGSTTCTTHHHHHHHHHCCCSSGGGGGGCTTCCHHHHHHHHHTGGG
T ss_pred CcCCHHHHhHCCCCCHHHHHHHHHcCCCCCHHHHHhccCCCHHHHHHHHHHhce
Confidence 33344678999999999999999842222 2235666889999999998875
No 20
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=88.48 E-value=0.22 Score=40.19 Aligned_cols=64 Identities=13% Similarity=0.138 Sum_probs=50.0
Q ss_pred cchhhhhhhcCcccCCCeEeeeeeccccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 031812 7 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVAN 73 (152)
Q Consensus 7 ~~~~~~vri~~~~l~~~k~v~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~~L~~~i~~ 73 (152)
+.|.++++.+ .--..|.+..+|..+ |.+...+..+++.+||+++.+..+|+.+|+..|.+.+++
T Consensus 206 ~~~~~~v~~~--F~~rrKtL~n~L~~~-~~~~~~~~~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~~~ 269 (271)
T 3fut_A 206 PGLFRLVEAA--FGKRRKTLLNALAAA-GYPKARVEEALRALGLPPRVRAEELDLEAFRRLREGLEG 269 (271)
T ss_dssp HHHHHHHHHH--TSSTTSCHHHHHHHT-TCCHHHHHHHHHHTTCCTTCCGGGCCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHH--HhcCCcHHHHHHHhh-cCCHHHHHHHHHHCCcCCCCChhhCCHHHHHHHHHHHHh
Confidence 3466666652 234578888888764 456777888999999999999999999999999998864
No 21
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=88.45 E-value=0.33 Score=30.83 Aligned_cols=50 Identities=10% Similarity=0.166 Sum_probs=35.8
Q ss_pred EeeeeeccccccchhhHHHHHHHhCC-------CC--CCcCCCCCHHHHHHHHHHHhCC
Q 031812 25 KIMFALTSIKGIGRRLANIVCKKADV-------DM--NKRAGELSAAELDQLMVVVANP 74 (152)
Q Consensus 25 ~v~~aLt~I~GIG~~~A~~Ic~~lgi-------~~--~~kv~~Ls~~qi~~L~~~i~~~ 74 (152)
....+|+.|+|||..+|..|++.+|= ++ -..+.-+.+.....|..+++++
T Consensus 11 ~~~~~L~~i~giG~~~a~~Ll~~fgs~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~~~ 69 (75)
T 1x2i_A 11 RQRLIVEGLPHVSATLARRLLKHFGSVERVFTASVAELMKVEGIGEKIAKEIRRVITAP 69 (75)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHHHSC
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHcCCHHHHHhCCHHHHhcCCCCCHHHHHHHHHHHhCc
Confidence 34567899999999999999998761 11 1234456677777777777764
No 22
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=88.26 E-value=0.29 Score=32.70 Aligned_cols=50 Identities=14% Similarity=0.186 Sum_probs=36.1
Q ss_pred eeeeeccccccchhhHHHHHHHhCC-------CCC--CcCCCCCHHHHHHHHHHHhCCC
Q 031812 26 IMFALTSIKGIGRRLANIVCKKADV-------DMN--KRAGELSAAELDQLMVVVANPR 75 (152)
Q Consensus 26 v~~aLt~I~GIG~~~A~~Ic~~lgi-------~~~--~kv~~Ls~~qi~~L~~~i~~~~ 75 (152)
+..+|+.|+|||..+|..|++.+|= ++. ..+.-+.+.....|..+++++.
T Consensus 17 ~~~~L~~IpgIG~~~A~~Ll~~fgsl~~l~~a~~~eL~~i~GIG~~~a~~I~~~l~~~~ 75 (89)
T 1z00_A 17 VTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEPF 75 (89)
T ss_dssp HHHHHTTSSSCCHHHHHHHHHHTCBHHHHHHCCHHHHHTSTTCCHHHHHHHHHHHHSCS
T ss_pred HHHHHHcCCCCCHHHHHHHHHHCCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 4578999999999999999998761 111 2344466666777888887753
No 23
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=87.33 E-value=0.15 Score=34.75 Aligned_cols=41 Identities=15% Similarity=0.122 Sum_probs=31.3
Q ss_pred EeeeeeccccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHH
Q 031812 25 KIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQL 67 (152)
Q Consensus 25 ~v~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~~L 67 (152)
.....|..|+|||+..+..|++.+| .-..+.+.|.+||..+
T Consensus 15 ~~~s~L~~IpGIG~kr~~~LL~~Fg--Sl~~i~~AS~eEL~~v 55 (84)
T 1z00_B 15 GPQDFLLKMPGVNAKNCRSLMHHVK--NIAELAALSQDELTSI 55 (84)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHSS--CHHHHHHSCHHHHHHH
T ss_pred cHHHHHHhCCCCCHHHHHHHHHHcC--CHHHHHHCCHHHHHHH
Confidence 3455688999999999999999887 3345666677777665
No 24
>1tdh_A NEI endonuclease VIII-like 1; helix two turns helix, zinc-LESS finger, hydrolase; 2.10A {Homo sapiens} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=85.36 E-value=0.083 Score=45.09 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=35.5
Q ss_pred CeEeeeee---ccccccchhhHHHHHHHhCCCCCCcCCCCCHH
Q 031812 23 KQKIMFAL---TSIKGIGRRLANIVCKKADVDMNKRAGELSAA 62 (152)
Q Consensus 23 ~k~v~~aL---t~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~ 62 (152)
+.+|..+| +-|-|||...|..||-+++|+|..++++|+++
T Consensus 158 ~~~IK~~LLDQ~vVAGIGNIYadEiLF~AgIhP~r~a~~Ls~~ 200 (364)
T 1tdh_A 158 DRPICEALLDQRFFNGIGNYLRAEILYRLKIPPFEKARSVLEA 200 (364)
T ss_dssp GSBHHHHTTCTTTSTTCCHHHHHHHHHHHTCCTTSBHHHHHGG
T ss_pred cccHHHHHhcCCeeeccchHHHHHHHHHCcCCCCCChhhcCHH
Confidence 56777777 44899999999999999999999999999886
No 25
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=84.75 E-value=0.52 Score=30.50 Aligned_cols=45 Identities=20% Similarity=0.238 Sum_probs=28.9
Q ss_pred EeeeeeccccccchhhHHHHHHHhCCCCC---CcCCCCCHHHHHHHHH
Q 031812 25 KIMFALTSIKGIGRRLANIVCKKADVDMN---KRAGELSAAELDQLMV 69 (152)
Q Consensus 25 ~v~~aLt~I~GIG~~~A~~Ic~~lgi~~~---~kv~~Ls~~qi~~L~~ 69 (152)
.-...|..++|||+.+|.+|.+...+..- ..+.-+++..++.|..
T Consensus 24 a~~~~L~~ipGIG~~~A~~Il~~r~~~s~~eL~~v~Gig~k~~~~i~~ 71 (75)
T 2duy_A 24 ASLEELMALPGIGPVLARRIVEGRPYARVEDLLKVKGIGPATLERLRP 71 (75)
T ss_dssp CCHHHHTTSTTCCHHHHHHHHHTCCCSSGGGGGGSTTCCHHHHHHHGG
T ss_pred CCHHHHHhCCCCCHHHHHHHHHHcccCCHHHHHhCCCCCHHHHHHHHH
Confidence 34456899999999999999987633221 1233345555555543
No 26
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=84.44 E-value=0.52 Score=37.40 Aligned_cols=57 Identities=19% Similarity=0.120 Sum_probs=44.5
Q ss_pred chhhhhhhcCcccCCCeEeeeeeccccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHh
Q 031812 8 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVA 72 (152)
Q Consensus 8 ~~~~~vri~~~~l~~~k~v~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~~L~~~i~ 72 (152)
.|..+++.+ .--..|.+..+|..+++ ..+++.+||+|+.++.+||.+|+..|.+.++
T Consensus 193 ~~~~~v~~~--F~~rrK~l~n~l~~~~~------~~~l~~~~i~~~~R~e~Ls~~~f~~l~~~~~ 249 (252)
T 1qyr_A 193 VLSRITTEA--FNQRRKTIRNSLGNLFS------VEVLTGMGIDPAMRAENISVAQYCQMANYLA 249 (252)
T ss_dssp HHHHHHHHH--HHTTTSBHHHHTTTTCC------HHHHHHTTCCTTSBGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHhCCcHHHHHHhhhhh------HHHHHHcCCCCCCChHHCCHHHHHHHHHHHH
Confidence 455666543 23567888888876654 5578899999999999999999999998875
No 27
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=83.56 E-value=0.95 Score=33.56 Aligned_cols=51 Identities=18% Similarity=0.197 Sum_probs=38.3
Q ss_pred CeEeeeeeccccccchhhHHHHHHHh---CCCCCCcCCCCCHHHHHHHHHHHhC
Q 031812 23 KQKIMFALTSIKGIGRRLANIVCKKA---DVDMNKRAGELSAAELDQLMVVVAN 73 (152)
Q Consensus 23 ~k~v~~aLt~I~GIG~~~A~~Ic~~l---gi~~~~kv~~Ls~~qi~~L~~~i~~ 73 (152)
|..=...|+.++|||+..|.+|++-- .++.-..+.-+++.+.+.|++..+.
T Consensus 58 NtA~~~eL~~LpGiGp~~A~~II~~GpF~svedL~~V~GIg~k~~e~l~~~~~~ 111 (134)
T 1s5l_U 58 NNTNIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNIPGLTERQKQILRENLEH 111 (134)
T ss_dssp TTSCGGGGGGSTTCTHHHHHHHHHTCCCSSGGGGGGCTTCCHHHHHHHHHHHTT
T ss_pred cccCHHHHHHCCCCCHHHHHHHHHcCCCCCHHHHHhCCCCCHHHHHHHHHhhcc
Confidence 33345678999999999999999531 2333346777889999999998876
No 28
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=83.30 E-value=0.22 Score=40.27 Aligned_cols=59 Identities=12% Similarity=0.175 Sum_probs=46.4
Q ss_pred cchhhhhhhcCcccCCCeEeeeeeccccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 031812 7 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVAN 73 (152)
Q Consensus 7 ~~~~~~vri~~~~l~~~k~v~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~~L~~~i~~ 73 (152)
+.|.++|+.+ .--..|.+..+|..+.+ ..+++.+||+|+.+..+||.+|+..|.+.+++
T Consensus 216 ~~~~~~v~~~--F~~rrK~l~n~L~~~~~------~~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~~~ 274 (279)
T 3uzu_A 216 AVLGEVVTAA--FSQRRKMLRNTLGGYRD------LVDFDALGFDLARRAEDIGVDEYVRVAQAVAS 274 (279)
T ss_dssp HHHHHHHHHH--GGGTTSBHHHHTGGGTT------TCCTTTTTCCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HhccChHHHHHHHhhcC------HHHHHHCCcCCCCCceeCCHHHHHHHHHHHHH
Confidence 3477777763 33457888888987654 24578899999999999999999999998864
No 29
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=82.64 E-value=1.3 Score=39.13 Aligned_cols=47 Identities=21% Similarity=0.362 Sum_probs=42.4
Q ss_pred eeeeccccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 031812 27 MFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVAN 73 (152)
Q Consensus 27 ~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~~L~~~i~~ 73 (152)
.|.-..+-++|...|..||..+|++++.+..+|+.+|+..+.+++..
T Consensus 256 ~fl~~~ft~~g~~~a~~~~~~~gl~~~~~~~~l~~~~~~~ll~a~~~ 302 (530)
T 2zbk_B 256 EFLVNEFQSIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETFKK 302 (530)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHTTCCSSCBSSCCCHHHHHHHHHHHHH
T ss_pred hhhcCccccccHHHHHHHHHhhCCCCCCCcccCCHHHHHHHHHHHHh
Confidence 45556689999999999999999999999999999999999998875
No 30
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=82.63 E-value=0.39 Score=32.35 Aligned_cols=25 Identities=12% Similarity=0.242 Sum_probs=22.1
Q ss_pred EeeeeeccccccchhhHHHHHHHhC
Q 031812 25 KIMFALTSIKGIGRRLANIVCKKAD 49 (152)
Q Consensus 25 ~v~~aLt~I~GIG~~~A~~Ic~~lg 49 (152)
.+..+|+.|+|||..+|..|++.+|
T Consensus 29 ~~~~~L~~IpgIG~~~A~~Ll~~fg 53 (91)
T 2a1j_B 29 RVTECLTTVKSVNKTDSQTLLTTFG 53 (91)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHS
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHCC
Confidence 3557899999999999999999887
No 31
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=79.41 E-value=1 Score=35.47 Aligned_cols=54 Identities=13% Similarity=0.282 Sum_probs=43.1
Q ss_pred chhhhhhhcCcccCCCeEeeeeeccccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 031812 8 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVAN 73 (152)
Q Consensus 8 ~~~~~vri~~~~l~~~k~v~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~~L~~~i~~ 73 (152)
.|.++++.+ .--..|.+..+|... .+..+||+|+.++.+||.+|+..|.+.+++
T Consensus 193 ~~~~~v~~~--F~~rrk~l~~~l~~~----------~l~~~~i~~~~r~e~l~~~~f~~l~~~~~~ 246 (249)
T 3ftd_A 193 NYKKFLTKI--FQNRRKVLRKKIPEE----------LLKEAGINPDARVEQLSLEDFFKLYRLIED 246 (249)
T ss_dssp HHHHHHHHH--HSSTTSCGGGTSCHH----------HHHHTTCCTTCCGGGCCHHHHHHHHHHHHC
T ss_pred HHHHHHHHH--HhCcChhHHHHHHHH----------HHHHCCCCCCCChhhCCHHHHHHHHHHHHH
Confidence 466666652 334577788888764 689999999999999999999999999875
No 32
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=77.55 E-value=1.4 Score=34.05 Aligned_cols=43 Identities=19% Similarity=0.081 Sum_probs=29.9
Q ss_pred EeeeeeccccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHH
Q 031812 25 KIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVV 71 (152)
Q Consensus 25 ~v~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~~L~~~i 71 (152)
...-.|++++|||+.+|..||..+|..+ .-+ -|.-+.++..-+
T Consensus 114 ~~~~~L~~lpGIG~kTA~~il~~~~~~~-~~~---vD~~v~Ri~~rl 156 (207)
T 3fhg_A 114 LARERLLNIKGIGMQEASHFLRNVGYFD-LAI---IDRHIIDFMRRI 156 (207)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHTTCCS-SCC---CCHHHHHHHHHT
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHhCCCC-cce---ecHHHHHHHHHc
Confidence 4566789999999999999998767633 222 234566655544
No 33
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=75.24 E-value=2.7 Score=28.48 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=19.2
Q ss_pred eeeeccccccchhhHHHHHHHh
Q 031812 27 MFALTSIKGIGRRLANIVCKKA 48 (152)
Q Consensus 27 ~~aLt~I~GIG~~~A~~Ic~~l 48 (152)
...|..|+|||...|.+|++..
T Consensus 39 ~~~L~~ipGIG~~~A~~Il~~r 60 (98)
T 2edu_A 39 ARDLRSLQRIGPKKAQLIVGWR 60 (98)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHH
Confidence 3458999999999999999876
No 34
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=72.44 E-value=2.1 Score=35.65 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=28.0
Q ss_pred ccchhhhhhhcCcccCCCeEeeeeeccccccchhhHHHHHHHhC
Q 031812 6 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKAD 49 (152)
Q Consensus 6 ~~~~~~~vri~~~~l~~~k~v~~aLt~I~GIG~~~A~~Ic~~lg 49 (152)
.++|-.+.=+.|+|-.++ |+|||+++|..+++..|
T Consensus 219 ~~q~id~~~L~G~D~~~g---------ipGiG~KtA~kll~~~g 253 (341)
T 3q8k_A 219 QEQFVDLCILLGSDYCES---------IRGIGPKRAVDLIQKHK 253 (341)
T ss_dssp HHHHHHHHHHHCCSSSCC---------CTTCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCCCCCC---------CCCccHHHHHHHHHHcC
Confidence 456888888899665443 78999999999998876
No 35
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=72.17 E-value=1.4 Score=35.06 Aligned_cols=39 Identities=15% Similarity=0.156 Sum_probs=30.2
Q ss_pred eeeeccccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHH
Q 031812 27 MFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQL 67 (152)
Q Consensus 27 ~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~~L 67 (152)
...|..|+|||+.+|..+++.+| .-..+.+-+.+|+..+
T Consensus 167 ~s~LdgIpGIG~k~ak~Ll~~Fg--Sl~~i~~As~EeL~~V 205 (220)
T 2nrt_A 167 RSVLDNVPGIGPIRKKKLIEHFG--SLENIRSASLEEIARV 205 (220)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHC--SHHHHHTSCHHHHHHH
T ss_pred cccccCCCCcCHHHHHHHHHHcC--CHHHHHhCCHHHHHHH
Confidence 45688999999999999999998 2233556677777665
No 36
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=71.58 E-value=0.82 Score=36.35 Aligned_cols=56 Identities=11% Similarity=0.170 Sum_probs=42.6
Q ss_pred chhhhhhhcCcccCCCeEeeeeeccccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHH
Q 031812 8 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVV 71 (152)
Q Consensus 8 ~~~~~vri~~~~l~~~k~v~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~~L~~~i 71 (152)
.|.++++.+ .--..|.+..+|..+++- ..++.+||+|+.++.+||.+|+..|.+.+
T Consensus 199 ~~~~~v~~~--F~~rrK~l~~~L~~~~~~------~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~ 254 (255)
T 3tqs_A 199 QLSHVVKEA--FSYRRKTVGNALKKLINP------SQWPLLEINPQLRPQELTVEDFVKISNIL 254 (255)
T ss_dssp HHHHHHHHH--HHSTTSCHHHHTTTTCCG------GGTGGGTCCTTSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHccChHHHHHHhhhCCH------HHHHHCCcCCCCCceeCCHHHHHHHHHHh
Confidence 466777653 334577888888776531 24688999999999999999999998876
No 37
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=71.08 E-value=1.6 Score=33.77 Aligned_cols=59 Identities=10% Similarity=0.146 Sum_probs=40.5
Q ss_pred hcCcccCCCeEeeeeeccccccchhhHHHHHHHhCCCCC------------CcCCCCCHHHHHHHHHHHhC
Q 031812 15 VLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMN------------KRAGELSAAELDQLMVVVAN 73 (152)
Q Consensus 15 i~~~~l~~~k~v~~aLt~I~GIG~~~A~~Ic~~lgi~~~------------~kv~~Ls~~qi~~L~~~i~~ 73 (152)
|.|-.=...+.++..|.+|.|||+++|.+|+..+|-+.- .++.-+...-.++|...+.+
T Consensus 59 l~gf~~~~ek~~f~~L~~v~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~~lk~ 129 (191)
T 1ixr_A 59 LYGFPDEENLALFELLLSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIALELKG 129 (191)
T ss_dssp EEEESSHHHHHHHHHHHSSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHHHHHHTT
T ss_pred hhccCCHHHHHHHHHHhcCCCcCHHHHHHHHHhCChHHHHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 444444445555567889999999999999999886211 34545666667777766654
No 38
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=70.78 E-value=1.9 Score=33.92 Aligned_cols=42 Identities=21% Similarity=0.119 Sum_probs=28.9
Q ss_pred eeeeec-cccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHH
Q 031812 26 IMFALT-SIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVV 71 (152)
Q Consensus 26 v~~aLt-~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~~L~~~i 71 (152)
..-.|+ +++|||+.+|..+|..+|..|-..+ |..+.++..-+
T Consensus 127 ~r~~L~~~l~GVG~kTA~~vL~~~g~~~~~~V----Dthv~Ri~~rl 169 (219)
T 3n0u_A 127 SREFLVRNAKGIGWKEASHFLRNTGVEDLAIL----DKHVLRLMKRH 169 (219)
T ss_dssp HHHHHHHHSTTCCHHHHHHHHHTTTCCSCCCC----CHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCCCeeee----cHHHHHHHHHc
Confidence 445688 9999999999999977777443322 34555555543
No 39
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=70.60 E-value=1.9 Score=33.86 Aligned_cols=42 Identities=17% Similarity=0.081 Sum_probs=30.4
Q ss_pred eeeeec-cccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHH
Q 031812 26 IMFALT-SIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVV 71 (152)
Q Consensus 26 v~~aLt-~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~~L~~~i 71 (152)
..-.|. +++|||+.+|..|+..+|. +...+ =|..+.++.+-+
T Consensus 122 ~re~Ll~~LpGVG~KTA~~vL~~~g~-~~~~v---VDthv~Ri~~Rl 164 (214)
T 3fhf_A 122 AREFLVRNIKGIGYKEASHFLRNVGY-DDVAI---IDRHILRELYEN 164 (214)
T ss_dssp HHHHHHHHSTTCCHHHHHHHHHHTTC-CSCCC---CCHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCC-CCccc---CcHHHHHHHHHc
Confidence 445688 9999999999999988876 33331 245777766655
No 40
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=69.27 E-value=1.8 Score=34.08 Aligned_cols=59 Identities=15% Similarity=0.267 Sum_probs=41.8
Q ss_pred hcCcccCCCeEeeeeeccccccchhhHHHHHHHhCCCCC------------CcCCCCCHHHHHHHHHHHhC
Q 031812 15 VLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMN------------KRAGELSAAELDQLMVVVAN 73 (152)
Q Consensus 15 i~~~~l~~~k~v~~aLt~I~GIG~~~A~~Ic~~lgi~~~------------~kv~~Ls~~qi~~L~~~i~~ 73 (152)
++|-.-...+.++.-|.+|.|||+++|.+|+..++.+.- .++.-+.+.-.++|...+.+
T Consensus 75 LyGF~~~~Er~lf~~L~sv~GIGpk~A~~Ils~~~~~~l~~aI~~~d~~~L~~vpGIG~KtA~rIi~elk~ 145 (212)
T 2ztd_A 75 LYGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRD 145 (212)
T ss_dssp EEEESSHHHHHHHHHHHTSTTCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHTT
T ss_pred eEecCcHHHHHHHHHhcCcCCcCHHHHHHHHHhCCHHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 344333455566667889999999999999998876332 35666677777777777765
No 41
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=67.54 E-value=1.1 Score=35.91 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=0.0
Q ss_pred eeccccccchhhHHHHHHHhCCCCCCcC
Q 031812 29 ALTSIKGIGRRLANIVCKKADVDMNKRA 56 (152)
Q Consensus 29 aLt~I~GIG~~~A~~Ic~~lgi~~~~kv 56 (152)
.|..|.|||+.+|..|++. |+..-..+
T Consensus 16 ~L~~IpGIGpk~a~~Ll~~-gf~sve~L 42 (241)
T 1vq8_Y 16 ELTDISGVGPSKAESLREA-GFESVEDV 42 (241)
T ss_dssp ----------------------------
T ss_pred HHhcCCCCCHHHHHHHHHc-CCCCHHHH
Confidence 5777888888888888776 66543333
No 42
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=66.87 E-value=1.2 Score=35.59 Aligned_cols=43 Identities=21% Similarity=0.265 Sum_probs=0.0
Q ss_pred CeEeeeeeccccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHH
Q 031812 23 KQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQL 67 (152)
Q Consensus 23 ~k~v~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~~L 67 (152)
......+|..|+|||+.+|..|++.+|= -..+.+-+.+|+..+
T Consensus 168 k~~~~s~L~~IpGIG~k~ak~Ll~~FGS--l~~i~~As~eeL~~V 210 (226)
T 3c65_A 168 KTMFHSVLDDIPGVGEKRKKALLNYFGS--VKKMKEATVEELQRA 210 (226)
T ss_dssp ---------------------------------------------
T ss_pred cccccccccccCCCCHHHHHHHHHHhCC--HHHHHhCCHHHHHHc
Confidence 3345678999999999999999998862 222444455555443
No 43
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=66.68 E-value=2.1 Score=33.29 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=27.1
Q ss_pred hcCcccCCCeEeeeeeccccccchhhHHHHHHHhCC
Q 031812 15 VLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADV 50 (152)
Q Consensus 15 i~~~~l~~~k~v~~aLt~I~GIG~~~A~~Ic~~lgi 50 (152)
|.|-.=...+.++..|.+|.|||+++|.+|+..+|-
T Consensus 60 l~gf~~~~ek~~f~~L~~V~GIGpk~A~~iL~~f~~ 95 (203)
T 1cuk_A 60 LYGFNNKQERTLFKELIKTNGVGPKLALAILSGMSA 95 (203)
T ss_dssp EEEESSHHHHHHHHHHHHSSSCCHHHHHHHHHHSCH
T ss_pred hhccCCHHHHHHHHHHhcCCCcCHHHHHHHHhhCCh
Confidence 444444445555557889999999999999998885
No 44
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=66.03 E-value=3.3 Score=34.85 Aligned_cols=35 Identities=26% Similarity=0.269 Sum_probs=28.3
Q ss_pred ccchhhhhhhcCcc-cCCCeEeeeeeccccccchhhHHHHHHHhC
Q 031812 6 NEDFQHILRVLNTN-VDGKQKIMFALTSIKGIGRRLANIVCKKAD 49 (152)
Q Consensus 6 ~~~~~~~vri~~~~-l~~~k~v~~aLt~I~GIG~~~A~~Ic~~lg 49 (152)
.++|-.+.=++|+| +|. .|+|||+.+|..+++..|
T Consensus 237 ~~q~id~~~L~GsDy~p~---------GVpGIG~KtA~kLl~~~g 272 (363)
T 3ory_A 237 LENLIDIGILLGTDYNPD---------GFEGIGPKKALQLVKAYG 272 (363)
T ss_dssp HHHHHHHHHHHCBTTBTT---------CSTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCC---------CCCCcCHHHHHHHHHHcC
Confidence 45677888888876 441 588999999999999987
No 45
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=64.61 E-value=2.2 Score=33.62 Aligned_cols=22 Identities=36% Similarity=0.443 Sum_probs=19.1
Q ss_pred eeeccccccchhhHHHHHHHhC
Q 031812 28 FALTSIKGIGRRLANIVCKKAD 49 (152)
Q Consensus 28 ~aLt~I~GIG~~~A~~Ic~~lg 49 (152)
-.|++++|||+++|.+|+..|.
T Consensus 123 ~~L~~vpGIG~KtA~rIi~elk 144 (212)
T 2ztd_A 123 AALTRVPGIGKRGAERMVLELR 144 (212)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHT
T ss_pred HHHhhCCCCCHHHHHHHHHHHH
Confidence 4689999999999999997664
No 46
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=63.85 E-value=2.6 Score=32.78 Aligned_cols=24 Identities=29% Similarity=0.177 Sum_probs=20.3
Q ss_pred eeeeeccccccchhhHHHHHHHhC
Q 031812 26 IMFALTSIKGIGRRLANIVCKKAD 49 (152)
Q Consensus 26 v~~aLt~I~GIG~~~A~~Ic~~lg 49 (152)
....|++++|||+.+|..|+....
T Consensus 119 ~~~~L~~lpGIG~kTA~~il~~a~ 142 (218)
T 1pu6_A 119 TREWLLDQKGIGKESADAILCYAC 142 (218)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHHTT
T ss_pred HHHHHHcCCCcCHHHHHHHHHHHC
Confidence 455699999999999999998654
No 47
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=61.12 E-value=1.8 Score=35.24 Aligned_cols=64 Identities=14% Similarity=0.152 Sum_probs=49.5
Q ss_pred chhhhhhhcCcccCCCeEeeeeecccc---ccchhhHHHHHHHh-----CCCC--CCcCCCCCHHHHHHHHHHHhC
Q 031812 8 DFQHILRVLNTNVDGKQKIMFALTSIK---GIGRRLANIVCKKA-----DVDM--NKRAGELSAAELDQLMVVVAN 73 (152)
Q Consensus 8 ~~~~~vri~~~~l~~~k~v~~aLt~I~---GIG~~~A~~Ic~~l-----gi~~--~~kv~~Ls~~qi~~L~~~i~~ 73 (152)
.|.++++.+ .--..|.+..+|.... |+....+..+++.+ |+++ +++..+||-+|+..|.+.+.+
T Consensus 214 ~~~~~v~~~--F~~rrK~l~n~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~R~e~Ls~~~f~~L~~~~~~ 287 (295)
T 3gru_A 214 FFDDFLRAI--FQHRNKSVRKALIDSSKELNYNKDEMKKILEDFLNTNSEIKNLINEKVFKLSVKDIVNLSNEFYR 287 (295)
T ss_dssp HHHHHHHHH--HTTTTSBHHHHHHHTGGGGTCCHHHHHHHHHHHHTTCHHHHHHHTSBGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HccCchHHHHHHhhhhccccCCHHHHHHHHHHhhhcccCCCccccCChhhCCHHHHHHHHHHHHH
Confidence 366777652 2345788999998764 34466778888888 8998 999999999999999998854
No 48
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=60.98 E-value=5.7 Score=33.29 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=28.9
Q ss_pred eeeccccccchhhHHHHHHHhCCCCC----CcCCCCCHHHHHHHH
Q 031812 28 FALTSIKGIGRRLANIVCKKADVDMN----KRAGELSAAELDQLM 68 (152)
Q Consensus 28 ~aLt~I~GIG~~~A~~Ic~~lgi~~~----~kv~~Ls~~qi~~L~ 68 (152)
..|++|+|||+++|..+.+. |+..- .+-+.|++.|..-|.
T Consensus 102 ~~l~~I~GvG~kta~~l~~~-Gi~tledL~~~~~~L~~~~~~Gl~ 145 (360)
T 2ihm_A 102 KLFTQVFGVGVKTANRWYQE-GLRTLDELREQPQRLTQQQKAGLQ 145 (360)
T ss_dssp HHHHTSTTCCHHHHHHHHHT-TCCSHHHHHTCCTTCCHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHc-CCCCHHHHHhcccchHHHHHHHHH
Confidence 46789999999999999877 88643 234567765554443
No 49
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=59.87 E-value=3.6 Score=30.82 Aligned_cols=36 Identities=11% Similarity=0.057 Sum_probs=26.8
Q ss_pred hhhhhhhcCcccCCCeEeeeeeccccccchhhHHHHHHH
Q 031812 9 FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKK 47 (152)
Q Consensus 9 ~~~~vri~~~~l~~~k~v~~aLt~I~GIG~~~A~~Ic~~ 47 (152)
.+.|+.+++-.+|.+. -.|.+++|||+++|.+++--
T Consensus 88 Ak~i~~~a~~~vp~~~---~~L~~LpGVG~yTAdav~~F 123 (161)
T 4e9f_A 88 AKTIVKFSDEYLTKQW---KYPIELHGIGKYGNDSYRIF 123 (161)
T ss_dssp HHHHHHHHHHHHHSCC---SSGGGSTTCCHHHHHHHHHH
T ss_pred HHHHHHHhCCcCCCCh---hhhhcCCCchHHHHHHHHHH
Confidence 4556666666676653 57899999999999998654
No 50
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=58.65 E-value=3.4 Score=31.71 Aligned_cols=23 Identities=39% Similarity=0.562 Sum_probs=19.6
Q ss_pred eeeeeccccccchhhHHHHHHHh
Q 031812 26 IMFALTSIKGIGRRLANIVCKKA 48 (152)
Q Consensus 26 v~~aLt~I~GIG~~~A~~Ic~~l 48 (152)
....|++++|||+.+|..|+...
T Consensus 107 ~~~~L~~l~GIG~~tA~~il~~~ 129 (211)
T 2abk_A 107 DRAALEALPGVGRKTANVVLNTA 129 (211)
T ss_dssp CHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCChHHHHHHHHHH
Confidence 44679999999999999999764
No 51
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=58.08 E-value=3.7 Score=31.90 Aligned_cols=41 Identities=10% Similarity=0.219 Sum_probs=27.5
Q ss_pred eeeeeccccccchhhHHHHHHHh-CCCCCCcCCCCCHHHHHHHHHHH
Q 031812 26 IMFALTSIKGIGRRLANIVCKKA-DVDMNKRAGELSAAELDQLMVVV 71 (152)
Q Consensus 26 v~~aLt~I~GIG~~~A~~Ic~~l-gi~~~~kv~~Ls~~qi~~L~~~i 71 (152)
....|.+++|||+.+|..|+..+ |. |.. .-|.-+.++..-+
T Consensus 107 ~~~~L~~lpGIG~~TA~~il~~a~~~-~~~----~vD~~v~Rv~~rl 148 (225)
T 1kg2_A 107 TFEEVAALPGVGRSTAGAILSLSLGK-HFP----ILDGNVKRVLARC 148 (225)
T ss_dssp SHHHHHTSTTCCHHHHHHHHHHHHCC-SCC----CCCHHHHHHHHHH
T ss_pred HHHHHhcCCCCcHHHHHHHHHHhCCC-Ccc----eeCHHHHHHHHHH
Confidence 35679999999999999999764 43 222 2345555555444
No 52
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=57.74 E-value=3.3 Score=35.06 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=27.9
Q ss_pred eeeccccccchhhHHHHHHHhCCCCCCcC-----CCCCHHHHHHHH
Q 031812 28 FALTSIKGIGRRLANIVCKKADVDMNKRA-----GELSAAELDQLM 68 (152)
Q Consensus 28 ~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv-----~~Ls~~qi~~L~ 68 (152)
..|++|+|||+++|..+.+. ||..-.-+ ..|++.|..-|.
T Consensus 121 ~~l~~I~GvGpk~a~~ly~~-Gi~tledL~~~~g~kl~~~q~~Gl~ 165 (381)
T 1jms_A 121 KLFTSVFGVGLKTAEKWFRM-GFRTLSKIQSDKSLRFTQMQKAGFL 165 (381)
T ss_dssp HHHHTSTTCCHHHHHHHHHT-TCCSHHHHHHCSSCCCCHHHHHHHH
T ss_pred HHHHccCCCCHHHHHHHHHc-CCCcHHHHHhCcccchHHHHHHHHH
Confidence 46789999999999999887 88653222 256655554443
No 53
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=57.45 E-value=6.1 Score=30.59 Aligned_cols=42 Identities=14% Similarity=0.039 Sum_probs=27.2
Q ss_pred eeeeeccccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHH
Q 031812 26 IMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVV 71 (152)
Q Consensus 26 v~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~~L~~~i 71 (152)
....|.+++|||+.+|..|+....=.|.-. -|.-+.++..-+
T Consensus 113 ~~~~L~~lpGIG~~TA~~il~~~~~~~~~~----vD~~v~Rv~~rl 154 (221)
T 1kea_A 113 NRKAILDLPGVGKYTCAAVMCLAFGKKAAM----VDANFVRVINRY 154 (221)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHHTTCCCCCC----CCHHHHHHHHHH
T ss_pred HHHHHHhCCCCcHHHHHHHHHHhcCCCcce----ecHHHHHHHHHH
Confidence 345799999999999999997653333221 234455554443
No 54
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=57.22 E-value=4.1 Score=31.82 Aligned_cols=25 Identities=32% Similarity=0.406 Sum_probs=21.0
Q ss_pred eeeeeccccccchhhHHHHHHH-hCC
Q 031812 26 IMFALTSIKGIGRRLANIVCKK-ADV 50 (152)
Q Consensus 26 v~~aLt~I~GIG~~~A~~Ic~~-lgi 50 (152)
....|++++|||+.+|..|+.. +|.
T Consensus 111 ~~~~L~~lpGIG~~TA~~il~~a~g~ 136 (226)
T 1orn_A 111 DRDELMKLPGVGRKTANVVVSVAFGV 136 (226)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHHHHCC
T ss_pred HHHHHHHCCCccHHHHHHHHHHHCCC
Confidence 4567999999999999999976 454
No 55
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=56.84 E-value=3.8 Score=31.59 Aligned_cols=22 Identities=41% Similarity=0.549 Sum_probs=19.3
Q ss_pred eeeccccccchhhHHHHHHHhC
Q 031812 28 FALTSIKGIGRRLANIVCKKAD 49 (152)
Q Consensus 28 ~aLt~I~GIG~~~A~~Ic~~lg 49 (152)
-.|++++|||+++|.+|+..+.
T Consensus 107 ~~L~~vpGIG~K~A~rI~~~lk 128 (191)
T 1ixr_A 107 RLLTSASGVGRRLAERIALELK 128 (191)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHT
T ss_pred HHHHhCCCCCHHHHHHHHHHHH
Confidence 3689999999999999998774
No 56
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=56.69 E-value=3.9 Score=36.14 Aligned_cols=29 Identities=14% Similarity=0.398 Sum_probs=23.6
Q ss_pred eEeeeeeccccccchhhHHHHHHHhCCCC
Q 031812 24 QKIMFALTSIKGIGRRLANIVCKKADVDM 52 (152)
Q Consensus 24 k~v~~aLt~I~GIG~~~A~~Ic~~lgi~~ 52 (152)
......|.+|+|||+++|.+|+..+|+..
T Consensus 89 ~~~~~~l~~v~GvGpk~A~~~~~~lg~~~ 117 (575)
T 3b0x_A 89 PRGVLEVMEVPGVGPKTARLLYEGLGIDS 117 (575)
T ss_dssp CHHHHHHHTSTTTCHHHHHHHHHTSCCCS
T ss_pred HHHHHHHhcCCCcCHHHHHHHHHhcCCCC
Confidence 34456789999999999999998877643
No 57
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=55.91 E-value=11 Score=24.80 Aligned_cols=35 Identities=14% Similarity=0.196 Sum_probs=24.2
Q ss_pred ccchhhHHHH--HHHhCCCCCCcCCCCCHHHHHHHHHH
Q 031812 35 GIGRRLANIV--CKKADVDMNKRAGELSAAELDQLMVV 70 (152)
Q Consensus 35 GIG~~~A~~I--c~~lgi~~~~kv~~Ls~~qi~~L~~~ 70 (152)
|.-.....++ +++|||+. ....+||+||+.+..-+
T Consensus 25 G~R~Fs~iql~RL~kLGI~k-tdP~~LT~eEi~~FaRL 61 (71)
T 2eo2_A 25 GVREFSEIQLSRLKKLGIHK-TDPSTLTEEEVRKFARL 61 (71)
T ss_dssp SSCCCCHHHHHHHHHHTCCC-CSTTTCCHHHHHHHHHT
T ss_pred CeeecCHHHHHHHHHcCCCC-CCcccCCHHHHhhceec
Confidence 4433333333 46899996 57899999999987653
No 58
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=55.70 E-value=4.3 Score=31.80 Aligned_cols=33 Identities=27% Similarity=0.248 Sum_probs=24.3
Q ss_pred EeeeeeccccccchhhHHHHHHH-hCCCCCCcCC
Q 031812 25 KIMFALTSIKGIGRRLANIVCKK-ADVDMNKRAG 57 (152)
Q Consensus 25 ~v~~aLt~I~GIG~~~A~~Ic~~-lgi~~~~kv~ 57 (152)
.+.-.|++++|||+.+|..|+-. +|-..-..++
T Consensus 135 ~~~~~L~~lpGIG~kTA~~ill~alg~pd~~pvd 168 (233)
T 2h56_A 135 TVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLSVG 168 (233)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHHTTCCSCCCCTT
T ss_pred HHHHHHHhCCCcCHHHHHHHHHHhCCCCCeeeCc
Confidence 45667999999999999999987 4543234443
No 59
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=55.04 E-value=4.5 Score=31.41 Aligned_cols=20 Identities=30% Similarity=0.508 Sum_probs=17.9
Q ss_pred eeccccccchhhHHHHHHHh
Q 031812 29 ALTSIKGIGRRLANIVCKKA 48 (152)
Q Consensus 29 aLt~I~GIG~~~A~~Ic~~l 48 (152)
.|++++|||+++|.+|+..|
T Consensus 109 ~L~~vpGIG~K~A~rI~~el 128 (203)
T 1cuk_A 109 ALVKLPGIGKKTAERLIVEM 128 (203)
T ss_dssp HHHTSTTCCHHHHHHHHHHH
T ss_pred HHhhCCCCCHHHHHHHHHHH
Confidence 58999999999999998655
No 60
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=54.95 E-value=4.6 Score=33.52 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=28.5
Q ss_pred eeeeccccccchhhHHHHHHHhCCCCCCc----CCCCCHHHHHHHH
Q 031812 27 MFALTSIKGIGRRLANIVCKKADVDMNKR----AGELSAAELDQLM 68 (152)
Q Consensus 27 ~~aLt~I~GIG~~~A~~Ic~~lgi~~~~k----v~~Ls~~qi~~L~ 68 (152)
...|++|+|||+++|..+.+. |+..-.- -+.|+..|..-|.
T Consensus 97 l~~l~~V~GiGpk~a~~l~~~-Gi~tledL~~a~~~l~~~~~~gl~ 141 (335)
T 2fmp_A 97 INFLTRVSGIGPSAARKFVDE-GIKTLEDLRKNEDKLNHHQRIGLK 141 (335)
T ss_dssp HHHHTTSTTCCHHHHHHHHHT-TCCSHHHHHTCGGGSCHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHc-CCCCHHHHHHhhhhhHHHHHHHHH
Confidence 456899999999999999887 9875321 2445555544443
No 61
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=54.57 E-value=4.8 Score=30.81 Aligned_cols=23 Identities=35% Similarity=0.626 Sum_probs=20.8
Q ss_pred eeeeccccccchhhHHHHHHHhC
Q 031812 27 MFALTSIKGIGRRLANIVCKKAD 49 (152)
Q Consensus 27 ~~aLt~I~GIG~~~A~~Ic~~lg 49 (152)
.+.|+.|+|||...|..|++.+|
T Consensus 161 ~~~L~~i~gVg~~~a~~Ll~~fg 183 (219)
T 2bgw_A 161 LYILQSFPGIGRRTAERILERFG 183 (219)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHS
T ss_pred HHHHhcCCCCCHHHHHHHHHHcC
Confidence 45688999999999999999987
No 62
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=54.40 E-value=6.5 Score=32.66 Aligned_cols=49 Identities=14% Similarity=0.265 Sum_probs=41.6
Q ss_pred CCeEeeeeeccccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 031812 22 GKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVAN 73 (152)
Q Consensus 22 ~~k~v~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~~L~~~i~~ 73 (152)
+++.+...|... +..+.+..+++..|++ ..++.+|+++|...|.+.|.+
T Consensus 279 ~~~~~~~~l~~~--lp~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~ 327 (401)
T 2gqf_A 279 PKQMLKTILVRL--LPKKLVELWIEQGIVQ-DEVIANISKVRVKNLVDFIHH 327 (401)
T ss_dssp TTSBHHHHHTTT--SCHHHHHHHHHTTSSC-CCBGGGCCHHHHHHHHHHHHC
T ss_pred ccccHHHHhhhh--cCHHHHHHHHHHcCCC-CCchhhCCHHHHHHHHHHHhc
Confidence 456677777664 6789999999999998 688999999999999999986
No 63
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=54.12 E-value=8.4 Score=32.31 Aligned_cols=49 Identities=27% Similarity=0.394 Sum_probs=40.5
Q ss_pred CCeEeeeeeccccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 031812 22 GKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVAN 73 (152)
Q Consensus 22 ~~k~v~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~~L~~~i~~ 73 (152)
+++.+...|.. .+..+.+..+|+.+++ +++++.+|+++++..|.+.|.+
T Consensus 298 ~~~~~~~~l~~--~lp~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~ 346 (417)
T 3v76_A 298 GRQAVQTALAD--ILPRRLAQFFADEAKL-TGRMLADLSDKTIDALASSIQV 346 (417)
T ss_dssp CSSBHHHHHTT--TSCHHHHHHHHHHTTC-TTCBGGGCCHHHHHHHHHHHHS
T ss_pred hhhhHHHHHHH--HhhHHHHHHHHHhcCC-CCCchhhCCHHHHHHHHHHhcC
Confidence 34555555543 3778899999999999 9999999999999999999987
No 64
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=53.96 E-value=7.2 Score=30.08 Aligned_cols=31 Identities=6% Similarity=-0.117 Sum_probs=27.5
Q ss_pred HHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 031812 43 IVCKKADVDMNKRAGELSAAELDQLMVVVAN 73 (152)
Q Consensus 43 ~Ic~~lgi~~~~kv~~Ls~~qi~~L~~~i~~ 73 (152)
.+++.+|++|+.++.+||.+|+..|.+.++.
T Consensus 211 ~~~~~~~~~~~~r~e~l~~~~~~~l~~~~~~ 241 (244)
T 1qam_A 211 QFNNSLKHAGIDDLNNISFEQFLSLFNSYKL 241 (244)
T ss_dssp HHHHHHHHHTCSCTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCceeCCHHHHHHHHHHHHH
Confidence 3578899999999999999999999998753
No 65
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=53.82 E-value=6.6 Score=31.76 Aligned_cols=32 Identities=34% Similarity=0.281 Sum_probs=24.3
Q ss_pred eeeeeccccccchhhHHHHHHH-hCCCCCCcCCC
Q 031812 26 IMFALTSIKGIGRRLANIVCKK-ADVDMNKRAGE 58 (152)
Q Consensus 26 v~~aLt~I~GIG~~~A~~Ic~~-lgi~~~~kv~~ 58 (152)
+.-.|++++|||+.+|..||-. +| ..--.+++
T Consensus 208 ~~~~L~~lpGIG~~TA~~ill~~lg-~d~fpvdD 240 (295)
T 2jhn_A 208 AYEYLTSFKGIGRWTAELVLSIALG-KNVFPADD 240 (295)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHTTC-CCCCCTTC
T ss_pred HHHHHhcCCCcCHHHHHHHHHHccC-CCcccchH
Confidence 4567999999999999999987 56 32335554
No 66
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=53.20 E-value=6.4 Score=33.00 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=27.6
Q ss_pred ccchhhhhhhcCcccCCCeEeeeeeccccccchhhHHHHHHHhC
Q 031812 6 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKAD 49 (152)
Q Consensus 6 ~~~~~~~vri~~~~l~~~k~v~~aLt~I~GIG~~~A~~Ic~~lg 49 (152)
.++|-.+.=++|+|-.++ |+|||+.+|..+++..|
T Consensus 219 ~~q~id~~~L~G~D~~d~---------IpGIG~KtA~kLl~~~g 253 (379)
T 1ul1_X 219 QEQFVDLCILLGSDYCES---------IRGIGPKRAVDLIQKHK 253 (379)
T ss_dssp HHHHHHHHHHHHCSSSCC---------CTTCCHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhCCCcCCC---------CCCcCHHHHHHHHHHcC
Confidence 356777777888776654 48999999999998865
No 67
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=52.84 E-value=4.7 Score=32.34 Aligned_cols=27 Identities=30% Similarity=0.304 Sum_probs=21.7
Q ss_pred eeeeeccccccchhhHHHHHHHhCCCC
Q 031812 26 IMFALTSIKGIGRRLANIVCKKADVDM 52 (152)
Q Consensus 26 v~~aLt~I~GIG~~~A~~Ic~~lgi~~ 52 (152)
+.-.|+.++|||+.+|..||-..-=.|
T Consensus 205 ~~~~L~~lpGIG~~TA~~ill~~lg~~ 231 (282)
T 1mpg_A 205 AMKTLQTFPGIGRWTANYFALRGWQAK 231 (282)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHSCCS
T ss_pred HHHHHhcCCCcCHHHHHHHHHHhCCCC
Confidence 457799999999999999998643334
No 68
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=52.25 E-value=5.6 Score=31.15 Aligned_cols=33 Identities=27% Similarity=0.292 Sum_probs=23.8
Q ss_pred eeeeeccccccchhhHHHHHHHhCCCCC-CcCCC
Q 031812 26 IMFALTSIKGIGRRLANIVCKKADVDMN-KRAGE 58 (152)
Q Consensus 26 v~~aLt~I~GIG~~~A~~Ic~~lgi~~~-~kv~~ 58 (152)
+.-.|+.++|||+.+|..|+-..-=.|+ ..+++
T Consensus 137 ~~~~L~~l~GIG~~TA~~ill~~lg~pd~fpvdD 170 (228)
T 3s6i_A 137 LIERLTQIKGIGRWTVEMLLIFSLNRDDVMPADD 170 (228)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHTSCCSSCCCTTC
T ss_pred HHHHHHhCCCcCHHHHHHHHHHhCCCCCEEeccc
Confidence 3668999999999999999976432332 34443
No 69
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=52.16 E-value=5.6 Score=31.30 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=25.0
Q ss_pred EeeeeeccccccchhhHHHHHHHhCCCCC-CcCCC
Q 031812 25 KIMFALTSIKGIGRRLANIVCKKADVDMN-KRAGE 58 (152)
Q Consensus 25 ~v~~aLt~I~GIG~~~A~~Ic~~lgi~~~-~kv~~ 58 (152)
.+.-.|+.++|||+.+|..||-..-=.|+ ..+++
T Consensus 147 ~~~~~L~~l~GIG~~TA~~ill~alg~pd~fpv~D 181 (232)
T 4b21_A 147 ELMESLSKIKGVKRWTIEMYSIFTLGRLDIMPADD 181 (232)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCCTTC
T ss_pred HHHHHHHhCCCcCHHHHHHHHHHhCCCCCeeeCcc
Confidence 35678999999999999999987533333 34544
No 70
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=51.96 E-value=4.7 Score=31.49 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=20.5
Q ss_pred EeeeeeccccccchhhHHHHHHHh
Q 031812 25 KIMFALTSIKGIGRRLANIVCKKA 48 (152)
Q Consensus 25 ~v~~aLt~I~GIG~~~A~~Ic~~l 48 (152)
.+...|+.++|||+.+|..||-..
T Consensus 143 e~~~~L~~l~GIG~~TA~~ill~~ 166 (225)
T 2yg9_A 143 LVIAELVQLPGIGRWTAEMFLLFA 166 (225)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHh
Confidence 345679999999999999999774
No 71
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=50.77 E-value=5.3 Score=32.39 Aligned_cols=43 Identities=12% Similarity=0.102 Sum_probs=29.5
Q ss_pred EeeeeeccccccchhhHHHHHHH-hCCCCCCcCCCCCHHHHHHHHHHH
Q 031812 25 KIMFALTSIKGIGRRLANIVCKK-ADVDMNKRAGELSAAELDQLMVVV 71 (152)
Q Consensus 25 ~v~~aLt~I~GIG~~~A~~Ic~~-lgi~~~~kv~~Ls~~qi~~L~~~i 71 (152)
...-.|+.++|||+.+|..||-. +|-..--.+ |--+.++...+
T Consensus 208 ~~~~~L~~lpGIG~~TA~~ill~~lg~pd~fpv----D~~v~r~~~rl 251 (290)
T 3i0w_A 208 ECHEELKKFMGVGPQVADCIMLFSMQKYSAFPV----DTWVKKAMMSL 251 (290)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHHCCTTCCCC----CHHHHHHHHHH
T ss_pred HHHHHHHhCCCcCHHHHHHHHHHhCCCCCccee----cHHHHHHHHHh
Confidence 35677999999999999999977 555333333 34555554443
No 72
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=50.27 E-value=22 Score=26.34 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=18.1
Q ss_pred CCcCCCCCHHHHHHHHHHHhC
Q 031812 53 NKRAGELSAAELDQLMVVVAN 73 (152)
Q Consensus 53 ~~kv~~Ls~~qi~~L~~~i~~ 73 (152)
...++.|||+|-+.|.++|..
T Consensus 11 ~~dLs~LteeEr~~Il~VL~R 31 (153)
T 2zet_C 11 RLDLSTLTDEEAEHVWAVVQR 31 (153)
T ss_dssp CCCCTTSCHHHHHHHHHHHHH
T ss_pred CCCcccCCHHHHHHHHHHHHh
Confidence 345789999999999999976
No 73
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=49.09 E-value=8.9 Score=30.33 Aligned_cols=86 Identities=17% Similarity=0.288 Sum_probs=50.1
Q ss_pred eeeeeccccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCCCC-ccCCcccc------------cccCCcCC
Q 031812 26 IMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQ-FKIPDWFL------------NRQKDYKD 92 (152)
Q Consensus 26 v~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~~L~~~i~~~~~-~~ip~w~~------------nr~~d~~t 92 (152)
+..+|.+.+|||+++|.++.-.+= .-.++++..|.+.|.+-.+ ...=+-+. +-++|.
T Consensus 24 LI~~l~~LPGIG~KsA~RlA~hLL--------~~~~~~~~~La~al~~~~~~i~~C~~C~nlte~~~C~IC~d~~Rd~-- 93 (212)
T 3vdp_A 24 LIEELSKLPGIGPKTAQRLAFFII--------NMPLDEVRSLSQAIIEAKEKLRYCKICFNITDKEVCDICSDENRDH-- 93 (212)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHHT--------TSCHHHHHHHHHHHHHHHHHCEECTTTCCEESSSSCHHHHCTTSEE--
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHHhCCcCCCCCCCCCCCcCCCCCCCCCCC--
Confidence 446789999999999999975442 2356777777777754210 10001111 122222
Q ss_pred CcceeeehhhHHHHHHHhHHHhHhhceeecccCCCC
Q 031812 93 GRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWG 128 (152)
Q Consensus 93 g~~~~~i~~dL~~~~~~~I~rl~~I~syRG~RH~~g 128 (152)
.-.-+||+- .|+.-+=+.+.|+|+=|..|
T Consensus 94 -~~iCVVE~~------~Dv~aiE~t~~y~G~YhVLg 122 (212)
T 3vdp_A 94 -STICVVSHP------MDVVAMEKVKEYKGVYHVLH 122 (212)
T ss_dssp -EEEEEESSH------HHHHHHHTTSCCCEEEEECS
T ss_pred -CEEEEECCH------HHHHHHHhhCccceEEEecC
Confidence 123345553 35556667778888877766
No 74
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=48.79 E-value=6.3 Score=32.70 Aligned_cols=27 Identities=15% Similarity=0.282 Sum_probs=21.2
Q ss_pred EeeeeeccccccchhhHHHHHHHhCCCC
Q 031812 25 KIMFALTSIKGIGRRLANIVCKKADVDM 52 (152)
Q Consensus 25 ~v~~aLt~I~GIG~~~A~~Ic~~lgi~~ 52 (152)
++.-.|++|+|||+++|..+.+. |+..
T Consensus 93 p~l~ll~~v~GiG~k~a~~l~~~-Gi~t 119 (335)
T 2bcq_A 93 PVLELFSNIWGAGTKTAQMWYQQ-GFRS 119 (335)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHT-TCCS
T ss_pred HHHHHHhcCCCcCHHHHHHHHHc-CCCC
Confidence 34444579999999999999876 8764
No 75
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=46.64 E-value=6.4 Score=32.65 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=20.1
Q ss_pred eeeeeccccccchhhHHHHHHHh
Q 031812 26 IMFALTSIKGIGRRLANIVCKKA 48 (152)
Q Consensus 26 v~~aLt~I~GIG~~~A~~Ic~~l 48 (152)
..-.|.+++|||+.+|..|+..+
T Consensus 116 ~~~~L~~l~GIG~~tA~~il~~~ 138 (369)
T 3fsp_A 116 DPDEFSRLKGVGPYTVGAVLSLA 138 (369)
T ss_dssp SHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHhcCCCcCHHHHHHHHHHH
Confidence 45679999999999999999774
No 76
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=45.99 E-value=6.8 Score=32.84 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=20.8
Q ss_pred EeeeeeccccccchhhHHHHHHHh
Q 031812 25 KIMFALTSIKGIGRRLANIVCKKA 48 (152)
Q Consensus 25 ~v~~aLt~I~GIG~~~A~~Ic~~l 48 (152)
...-.|+.++|||+.+|..||-..
T Consensus 250 ~~~~~L~~LpGIGp~TA~~ill~a 273 (360)
T 2xhi_A 250 EAHKALCILPGVGTCVADKICLMA 273 (360)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHh
Confidence 456789999999999999999773
No 77
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=45.95 E-value=9.5 Score=31.29 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=27.7
Q ss_pred ccchhhhhhhcCcccCCCeEeeeeeccccccchhhHHHHHHHhC
Q 031812 6 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKAD 49 (152)
Q Consensus 6 ~~~~~~~vri~~~~l~~~k~v~~aLt~I~GIG~~~A~~Ic~~lg 49 (152)
.++|-.+.=+.|+|--+. .|+|||+.+|..+++..|
T Consensus 223 ~~q~id~~~L~G~Dy~p~--------gv~GiG~ktA~kli~~~g 258 (340)
T 1b43_A 223 REKLIELAILVGTDYNPG--------GIKGIGLKKALEIVRHSK 258 (340)
T ss_dssp HHHHHHHHHHHCCTTSTT--------CSTTCCHHHHHHHHHTCS
T ss_pred HHHHHHHHHhcCCCCCCC--------CCCCccHHHHHHHHHHcC
Confidence 356777777788654432 689999999999999875
No 78
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=45.89 E-value=15 Score=31.18 Aligned_cols=37 Identities=14% Similarity=0.337 Sum_probs=29.0
Q ss_pred eeccccccchhhHHHHHHHhCCCCCCcCCCCCHHHHH
Q 031812 29 ALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELD 65 (152)
Q Consensus 29 aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~ 65 (152)
-+..+.|||..++..+++.+||..-.-+-.++.+++.
T Consensus 254 pv~~l~GiG~~~~~~lL~~lGI~TigdLa~~~~~~L~ 290 (435)
T 4ecq_A 254 PIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQ 290 (435)
T ss_dssp BGGGSTTCSSHHHHHHHHHHTCCBGGGGGGSCHHHHH
T ss_pred CHHHhcCCCHHHHHHHHHHcCCCcHHHHhhCCHHHHH
Confidence 4678999999999999999999865555555666654
No 79
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=45.47 E-value=12 Score=30.83 Aligned_cols=36 Identities=28% Similarity=0.348 Sum_probs=27.3
Q ss_pred ccchhhhhhhcCcccCCCeEeeeeeccccccchhhHHHHHHHhC
Q 031812 6 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKAD 49 (152)
Q Consensus 6 ~~~~~~~vri~~~~l~~~k~v~~aLt~I~GIG~~~A~~Ic~~lg 49 (152)
.++|-.+.=+.|+|--+. .|+|||+++|..+++..|
T Consensus 220 ~~q~id~~~L~G~D~~p~--------Gv~GIG~KtA~kLi~~~g 255 (346)
T 2izo_A 220 REQLIDIGILIGTDYNPD--------GIRGIGPERALKIIKKYG 255 (346)
T ss_dssp HHHHHHHHHHHCCSSSTT--------CSTTCCHHHHHHHHHHSS
T ss_pred HHHHHHHHHHcCCCCCCC--------CCCCcCHHHHHHHHHHcC
Confidence 356777777788553331 589999999999999876
No 80
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=45.37 E-value=11 Score=30.86 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=26.2
Q ss_pred ccchhhhhhhcCcccCCCeEeeeeeccccccchhhHHHHHHHhC
Q 031812 6 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKAD 49 (152)
Q Consensus 6 ~~~~~~~vri~~~~l~~~k~v~~aLt~I~GIG~~~A~~Ic~~lg 49 (152)
.++|-.+.=+.|+|--+ .++|||+++|..+++..|
T Consensus 222 ~~q~id~~~L~GsD~ip---------Gv~GiG~KtA~kLl~~~g 256 (336)
T 1rxw_A 222 REQLIDIAILVGTDYNE---------GVKGVGVKKALNYIKTYG 256 (336)
T ss_dssp HHHHHHHHHHHCBTTBC---------CCTTCCHHHHHHHHHHHS
T ss_pred HHHHHHHHhhcCCCCCC---------CCCCcCHHHHHHHHHHcC
Confidence 35566777777843222 589999999999999876
No 81
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=45.37 E-value=8.9 Score=30.19 Aligned_cols=20 Identities=15% Similarity=0.459 Sum_probs=17.4
Q ss_pred eeeccccccchhhHHHHHHH
Q 031812 28 FALTSIKGIGRRLANIVCKK 47 (152)
Q Consensus 28 ~aLt~I~GIG~~~A~~Ic~~ 47 (152)
..|..++|||+.+|.+|.+.
T Consensus 132 ~eL~~LpGIG~k~A~~IIey 151 (205)
T 2i5h_A 132 HQLELLPGVGKKMMWAIIEE 151 (205)
T ss_dssp BGGGGSTTCCHHHHHHHHHH
T ss_pred HHHhcCCCcCHHHHHHHHHH
Confidence 45788999999999999864
No 82
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=45.23 E-value=15 Score=26.69 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=15.8
Q ss_pred CCCcCCCCCHHHHHHHHHHHhC
Q 031812 52 MNKRAGELSAAELDQLMVVVAN 73 (152)
Q Consensus 52 ~~~kv~~Ls~~qi~~L~~~i~~ 73 (152)
+...++.||++|.+.|.++|..
T Consensus 3 ~~~dls~LteeE~~~Il~Vl~R 24 (134)
T 1zbd_B 3 HMRKQEELTDEEKEIINRVIAR 24 (134)
T ss_dssp -----CCCCSSHHHHHHHHHHH
T ss_pred CCCCcccCCHHHHHHHHHHHhh
Confidence 4556889999999999999976
No 83
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=44.49 E-value=13 Score=30.29 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=26.2
Q ss_pred ccchhhhhhhcCcccCCCeEeeeeeccccccchhhHHHHHHHhC
Q 031812 6 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKAD 49 (152)
Q Consensus 6 ~~~~~~~vri~~~~l~~~k~v~~aLt~I~GIG~~~A~~Ic~~lg 49 (152)
.++|-.+.=++|+|--+ ..|+|||+.+|..+++. |
T Consensus 211 ~~q~id~~~L~GsD~~p--------~GvpGiG~ktA~kli~~-g 245 (326)
T 1a76_A 211 LDDLIDIAIFMGTDYNP--------GGVKGIGFKRAYELVRS-G 245 (326)
T ss_dssp HHHHHHHHHHHCCTTST--------TTTTTCCHHHHHHHHHH-T
T ss_pred HHHHHHHHHHcCCCCCC--------CCCCCcCHHHHHHHHHc-C
Confidence 45677777777855333 17899999999999988 5
No 84
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=43.10 E-value=8.8 Score=33.92 Aligned_cols=26 Identities=15% Similarity=0.359 Sum_probs=20.9
Q ss_pred EeeeeeccccccchhhHHHHHHHhCCC
Q 031812 25 KIMFALTSIKGIGRRLANIVCKKADVD 51 (152)
Q Consensus 25 ~v~~aLt~I~GIG~~~A~~Ic~~lgi~ 51 (152)
.....|.+|+|||+++|.+|... |+.
T Consensus 94 ~~~~~L~~v~GVGpk~A~~i~~~-G~~ 119 (578)
T 2w9m_A 94 PGLLDLLGVRGLGPKKIRSLWLA-GID 119 (578)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHT-TCC
T ss_pred HHHHHHhCCCCcCHHHHHHHHHc-CCC
Confidence 34566899999999999999976 543
No 85
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=42.86 E-value=11 Score=21.63 Aligned_cols=41 Identities=15% Similarity=0.079 Sum_probs=30.8
Q ss_pred eccccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHH
Q 031812 30 LTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVV 71 (152)
Q Consensus 30 Lt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~~L~~~i 71 (152)
|.+-.|++.......+..+|+ .......+++++...|.+.+
T Consensus 8 lAkel~~~~k~l~~~l~~~g~-~k~~~s~l~~~~~~~l~~~~ 48 (49)
T 1nd9_A 8 LAAERQTSVERLVQQFADAGI-RKSADDSVSAQEKQTLIDHL 48 (49)
T ss_dssp HHHHHSSSHHHHHHHHHHHTS-CCSSSSCEETTGGGHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHcCC-CCCCCCcCCHHHHHHHHHHh
Confidence 444558888889999999999 44556668888888777654
No 86
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=42.20 E-value=8.3 Score=24.36 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031812 57 GELSAAELDQLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (152)
+.||++|+..|..+|..
T Consensus 65 ~~ls~~ei~~l~~yl~~ 81 (90)
T 1cyi_A 65 DRLSEEEIQAVAEYVFK 81 (90)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHh
Confidence 46999999999999976
No 87
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=42.17 E-value=13 Score=29.74 Aligned_cols=42 Identities=17% Similarity=0.280 Sum_probs=30.8
Q ss_pred eEeeeeeccccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 031812 24 QKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVAN 73 (152)
Q Consensus 24 k~v~~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~~L~~~i~~ 73 (152)
..+..+|.+.+|||+++|.++.-.+= .-.++++..|.+.|.+
T Consensus 8 ~~LI~~l~~LPGIG~KSA~RlA~hLL--------~~~~~~~~~La~al~~ 49 (228)
T 1vdd_A 8 VSLIRELSRLPGIGPKSAQRLAFHLF--------EQPREDIERLASALLE 49 (228)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHHHHHS--------SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhHCCCCCHHHHHHHHHHHH--------cCCHHHHHHHHHHHHH
Confidence 34566899999999999999975542 2356777777777654
No 88
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=42.01 E-value=15 Score=30.63 Aligned_cols=36 Identities=28% Similarity=0.393 Sum_probs=27.3
Q ss_pred CccchhhhhhhcCcccCCCeEeeeeeccccccchhhHHHHHHHhC
Q 031812 5 ANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKAD 49 (152)
Q Consensus 5 ~~~~~~~~vri~~~~l~~~k~v~~aLt~I~GIG~~~A~~Ic~~lg 49 (152)
..++|..+.=+.|+|- +..|+|||+++|..+++..+
T Consensus 211 ~~~q~id~~~L~G~D~---------~pgv~GiG~ktA~kli~~~~ 246 (352)
T 3qe9_Y 211 TEEKFRYMCILSGCDY---------LSSLRGIGLAKACKVLRLAN 246 (352)
T ss_dssp CHHHHHHHHHHHCCSS---------SCCCTTCCHHHHHHHHHHCC
T ss_pred CHHHHHHHHHhcCCCC---------CCCCCCeeHHHHHHHHHHhC
Confidence 4466777777777442 23699999999999999885
No 89
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=41.67 E-value=9.7 Score=33.82 Aligned_cols=23 Identities=39% Similarity=0.436 Sum_probs=21.2
Q ss_pred eeeeccccccchhhHHHHHHHhC
Q 031812 27 MFALTSIKGIGRRLANIVCKKAD 49 (152)
Q Consensus 27 ~~aLt~I~GIG~~~A~~Ic~~lg 49 (152)
.+-|++|.|||+.+|..+++++|
T Consensus 467 eamLtAIaGIGp~tAeRLLEkFG 489 (685)
T 4gfj_A 467 YASLISIRGIDRERAERLLKKYG 489 (685)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHT
T ss_pred eeeeeccCCCCHHHHHHHHHHhc
Confidence 47789999999999999999988
No 90
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.47 E-value=11 Score=27.18 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHHHhCCCCccCCcccccccCCcCCCc
Q 031812 57 GELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGR 94 (152)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~~~~~~ip~w~~nr~~d~~tg~ 94 (152)
.+|+++|+..|..+|.+ +.+..-.-|-++||.+|=
T Consensus 10 ~~l~~ee~~el~~WL~~---l~Ls~~~rn~rRDFSdG~ 44 (127)
T 2ee7_A 10 SSVDEEALHQLYLWVDN---IPLSRPKRNLSRDFSDGV 44 (127)
T ss_dssp SSCCHHHHHHHHHHHHH---SCCSCCSSCHHHHHTTSH
T ss_pred CCCCHHHHHHHHHHHHc---CCCCCCCCchhhhccchh
Confidence 57999999999999985 444333456678888763
No 91
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=39.14 E-value=12 Score=25.20 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=16.2
Q ss_pred eccccccchhhHHHHHHHh
Q 031812 30 LTSIKGIGRRLANIVCKKA 48 (152)
Q Consensus 30 Lt~I~GIG~~~A~~Ic~~l 48 (152)
+..+.|||.++|..|-++|
T Consensus 60 ~~~L~giG~ki~~~L~e~L 78 (87)
T 2kp7_A 60 AKILQHFGDRLCRMLDEKL 78 (87)
T ss_dssp HHTCTTTCHHHHHHHHHHH
T ss_pred HHHhhcccHHHHHHHHHHH
Confidence 4689999999999998765
No 92
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=37.31 E-value=11 Score=30.88 Aligned_cols=48 Identities=15% Similarity=0.207 Sum_probs=29.2
Q ss_pred CcccCCCeEeeeeecc-ccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHH
Q 031812 17 NTNVDGKQKIMFALTS-IKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVV 71 (152)
Q Consensus 17 ~~~l~~~k~v~~aLt~-I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~~L~~~i 71 (152)
|-++|.. ...|.. ++|||+.+|..|+..+-=.|.. .-|.-+.++..-+
T Consensus 120 ~g~~p~~---~~~Ll~~LpGIG~kTA~~iL~~a~g~p~~----~VDt~V~Rv~~Rl 168 (287)
T 3n5n_X 120 GGHMPRT---AETLQQLLPGVGRYTAGAIASIAFGQATG----VVDGNVARVLCRV 168 (287)
T ss_dssp TTCCCSS---HHHHHHHSTTCCHHHHHHHHHHHSCCCCC----CCCHHHHHHHHHH
T ss_pred CCCCcHH---HHHHHHHcCCCCHHHHHHHHHHhcCCCCc----cccHHHHHHHHHh
Confidence 3345543 456777 9999999999998764212221 1244555555544
No 93
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=36.97 E-value=15 Score=29.93 Aligned_cols=18 Identities=17% Similarity=0.405 Sum_probs=16.1
Q ss_pred cccccchhhHHHHHHHhC
Q 031812 32 SIKGIGRRLANIVCKKAD 49 (152)
Q Consensus 32 ~I~GIG~~~A~~Ic~~lg 49 (152)
.++|||+++|..+++..|
T Consensus 207 GVpGIG~KTA~kLL~~~g 224 (290)
T 1exn_A 207 GVEGIGAKRGYNIIREFG 224 (290)
T ss_dssp CCTTCCHHHHHHHHHHHC
T ss_pred CCCcCCHhHHHHHHHHcC
Confidence 489999999999998876
No 94
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=36.57 E-value=9.1 Score=31.73 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=25.9
Q ss_pred eeccccccchhhHHHHHHHhCCCCCCcCCCCC
Q 031812 29 ALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60 (152)
Q Consensus 29 aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls 60 (152)
.|+.++|||..+|..|.+.+.=..-..+.+|.
T Consensus 58 ~l~~lpGIG~~~A~kI~E~l~tG~~~~le~l~ 89 (335)
T 2bcq_A 58 EACSIPGIGKRMAEKIIEILESGHLRKLDHIS 89 (335)
T ss_dssp HHHTSTTCCHHHHHHHHHHHHSSSCGGGGGCC
T ss_pred HHhcCCCccHHHHHHHHHHHHcCCchHHHHHh
Confidence 48999999999999999987755555666664
No 95
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=34.85 E-value=39 Score=26.48 Aligned_cols=33 Identities=12% Similarity=0.167 Sum_probs=28.6
Q ss_pred hHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 031812 40 LANIVCKKADVDMNKRAGELSAAELDQLMVVVAN 73 (152)
Q Consensus 40 ~A~~Ic~~lgi~~~~kv~~Ls~~qi~~L~~~i~~ 73 (152)
.+..+++.+||+ +.+..+||.+|+..|.+.+.+
T Consensus 247 ~~~~~l~~~~~~-~~R~e~l~~~~f~~l~~~~~~ 279 (285)
T 1zq9_A 247 KIQQILTSTGFS-DKRARSMDIDDFIRLLHGFNA 279 (285)
T ss_dssp HHHHHHHHHTCT-TCBGGGCCHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCC-CCChhhCCHHHHHHHHHHHHH
Confidence 345778899998 789999999999999999865
No 96
>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A*
Probab=33.18 E-value=30 Score=21.55 Aligned_cols=17 Identities=0% Similarity=0.145 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031812 57 GELSAAELDQLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (152)
..||++|+..|..+|..
T Consensus 63 ~~Lsd~ei~~l~~Yi~~ 79 (81)
T 1kx2_A 63 TDCTDEDYKAAIEFMSK 79 (81)
T ss_dssp SSCCHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 47999999999999965
No 97
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=33.11 E-value=7.9 Score=34.16 Aligned_cols=28 Identities=25% Similarity=0.450 Sum_probs=17.7
Q ss_pred eeeeccccccchhhHHHHHHHhCCCCCC
Q 031812 27 MFALTSIKGIGRRLANIVCKKADVDMNK 54 (152)
Q Consensus 27 ~~aLt~I~GIG~~~A~~Ic~~lgi~~~~ 54 (152)
.|-|..|.|||..+|..|..++|++++-
T Consensus 43 Py~l~~i~gigf~~aD~ia~~~g~~~~~ 70 (574)
T 3e1s_A 43 LFTLTEVEGIGFLTADKLWQARGGALDD 70 (574)
T ss_dssp -CGGGTSSSCCHHHHHTTC-------CC
T ss_pred CcccCCcCCCCHHHHHHHHHHcCCCCCC
Confidence 4677889999999999999999998653
No 98
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=32.65 E-value=15 Score=24.03 Aligned_cols=15 Identities=7% Similarity=0.375 Sum_probs=11.3
Q ss_pred CCCHHHHHHHHHHHh
Q 031812 58 ELSAAELDQLMVVVA 72 (152)
Q Consensus 58 ~Ls~~qi~~L~~~i~ 72 (152)
.+|.+|++.|+.+..
T Consensus 23 ~ft~~Ql~~Le~F~~ 37 (80)
T 1wh7_A 23 KFTAEQKEKMLAFAE 37 (80)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 478888888886555
No 99
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=32.55 E-value=27 Score=23.76 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=18.9
Q ss_pred eeccccccchhhHHHHHHHhCCCC
Q 031812 29 ALTSIKGIGRRLANIVCKKADVDM 52 (152)
Q Consensus 29 aLt~I~GIG~~~A~~Ic~~lgi~~ 52 (152)
-|+.+++||+.++..+ .++||+.
T Consensus 5 ~L~~LPNiG~~~e~~L-~~vGI~s 27 (93)
T 3bqs_A 5 NLSELPNIGKVLEQDL-IKAGIKT 27 (93)
T ss_dssp CGGGSTTCCHHHHHHH-HHTTCCS
T ss_pred HhhcCCCCCHHHHHHH-HHcCCCC
Confidence 4788999999998876 7888875
No 100
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1
Probab=32.36 E-value=29 Score=21.52 Aligned_cols=17 Identities=12% Similarity=0.210 Sum_probs=15.0
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031812 57 GELSAAELDQLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (152)
..||++|+..|..+|..
T Consensus 60 ~~Lsd~ei~~l~~yi~~ 76 (78)
T 1gks_A 60 GRADREDLVKAIEYMLS 76 (78)
T ss_dssp TTBCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 47999999999999975
No 101
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.27 E-value=11 Score=25.15 Aligned_cols=19 Identities=11% Similarity=0.046 Sum_probs=15.0
Q ss_pred cCCCCCHHHHHHHHHHHhC
Q 031812 55 RAGELSAAELDQLMVVVAN 73 (152)
Q Consensus 55 kv~~Ls~~qi~~L~~~i~~ 73 (152)
+...+|.+|+..|+.....
T Consensus 16 k~k~~t~~Ql~~Le~~F~~ 34 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLK 34 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHcc
Confidence 5566889999988888765
No 102
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=31.72 E-value=8.3 Score=32.27 Aligned_cols=21 Identities=10% Similarity=0.222 Sum_probs=19.2
Q ss_pred eeccccccchhhHHHHHHHhC
Q 031812 29 ALTSIKGIGRRLANIVCKKAD 49 (152)
Q Consensus 29 aLt~I~GIG~~~A~~Ic~~lg 49 (152)
.|+.++|||..+|..|.+.+.
T Consensus 62 ~l~~lpGIG~~~A~kI~E~l~ 82 (360)
T 2ihm_A 62 QLHGLPYFGEHSTRVIQELLE 82 (360)
T ss_dssp GGTTCTTCCHHHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHH
Confidence 499999999999999998876
No 103
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=31.57 E-value=28 Score=26.80 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=20.8
Q ss_pred eccccccchhhHHHHHHHhCCCCCCcCCCCCH
Q 031812 30 LTSIKGIGRRLANIVCKKADVDMNKRAGELSA 61 (152)
Q Consensus 30 Lt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~ 61 (152)
+..+.|||..++..+ +++||.. +++|-.
T Consensus 186 v~~l~giG~~~~~~L-~~~Gi~T---igdL~~ 213 (221)
T 1im4_A 186 IDEIPGIGSVLARRL-NELGIQK---LRDILS 213 (221)
T ss_dssp GGGSTTCCHHHHHHH-HHTTCCB---TTC---
T ss_pred cccccCCCHHHHHHH-HHcCCCc---HHHHHC
Confidence 688999999988875 8899975 666543
No 104
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=31.33 E-value=33 Score=20.96 Aligned_cols=17 Identities=12% Similarity=0.347 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031812 57 GELSAAELDQLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (152)
..||++|+..|..+|..
T Consensus 61 ~~Ls~~ei~~l~~yl~~ 77 (79)
T 2d0s_A 61 PQVAEADIEKIVRWVLT 77 (79)
T ss_dssp TTSCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 48999999999999964
No 105
>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1
Probab=30.49 E-value=35 Score=21.63 Aligned_cols=16 Identities=19% Similarity=0.212 Sum_probs=14.3
Q ss_pred CCCHHHHHHHHHHHhC
Q 031812 58 ELSAAELDQLMVVVAN 73 (152)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (152)
.||++|+..|..+|.+
T Consensus 67 ~Lsd~ei~~v~~yi~~ 82 (83)
T 1cc5_A 67 DCSDDELKAAIGKMSG 82 (83)
T ss_dssp SCCHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHh
Confidence 6999999999999864
No 106
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.34 E-value=29 Score=21.98 Aligned_cols=24 Identities=13% Similarity=0.018 Sum_probs=18.1
Q ss_pred CCCCCcCCCCCHHHHHHHHHHHhC
Q 031812 50 VDMNKRAGELSAAELDQLMVVVAN 73 (152)
Q Consensus 50 i~~~~kv~~Ls~~qi~~L~~~i~~ 73 (152)
.+|...-..+|.+|+..|+.+...
T Consensus 6 ~~~~~~R~~ft~~Ql~~Le~~F~~ 29 (76)
T 2dn0_A 6 SGASIYKNKKSHEQLSALKGSFCR 29 (76)
T ss_dssp SCCCCCCCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHhc
Confidence 355555566899999999988875
No 107
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=30.34 E-value=21 Score=22.19 Aligned_cols=17 Identities=24% Similarity=0.390 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031812 57 GELSAAELDQLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (152)
+.||++|+..|..+|..
T Consensus 66 ~~ls~~ei~~l~~yl~~ 82 (89)
T 1c6r_A 66 GTLDDDEIAAVAAYVYD 82 (89)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHH
Confidence 47999999999999975
No 108
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=30.07 E-value=5.5 Score=33.04 Aligned_cols=21 Identities=14% Similarity=0.324 Sum_probs=19.1
Q ss_pred eeccccccchhhHHHHHHHhC
Q 031812 29 ALTSIKGIGRRLANIVCKKAD 49 (152)
Q Consensus 29 aLt~I~GIG~~~A~~Ic~~lg 49 (152)
.|+.++|||..+|..|.+.+.
T Consensus 58 ~l~~LpGIG~~~A~kI~E~l~ 78 (335)
T 2fmp_A 58 EAKKLPGVGTKIAEKIDEFLA 78 (335)
T ss_dssp HHHTSTTCCHHHHHHHHHHHH
T ss_pred HHhcCCCCcHHHHHHHHHHHH
Confidence 489999999999999998876
No 109
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=29.93 E-value=36 Score=27.66 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=26.6
Q ss_pred eccccccchhhHHHHHHHhCCCCCCcCCCCCHHHHH
Q 031812 30 LTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELD 65 (152)
Q Consensus 30 Lt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~ 65 (152)
++.+.|||..++..+ +.+||..-.-+-.++.+++.
T Consensus 180 v~~l~GiG~~~~~~L-~~~Gi~t~~dL~~~~~~~L~ 214 (352)
T 1jx4_A 180 IADVPGIGNITAEKL-KKLGINKLVDTLSIEFDKLK 214 (352)
T ss_dssp GGGSTTCCHHHHHHH-HTTTCCBGGGGGSSCHHHHH
T ss_pred CCcccccCHHHHHHH-HHcCCchHHHHHCCCHHHHH
Confidence 788999999998885 78999875555555665554
No 110
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=29.39 E-value=11 Score=24.64 Aligned_cols=16 Identities=6% Similarity=0.393 Sum_probs=12.5
Q ss_pred CCCHHHHHHHHHHHhC
Q 031812 58 ELSAAELDQLMVVVAN 73 (152)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (152)
.+|.+|+..|+.+.+.
T Consensus 23 ~ft~~Ql~~Le~~f~~ 38 (80)
T 1wh5_A 23 KFTAEQKERMLALAER 38 (80)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh
Confidence 4788888888887764
No 111
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*
Probab=28.64 E-value=41 Score=20.18 Aligned_cols=20 Identities=20% Similarity=0.210 Sum_probs=16.6
Q ss_pred CcCCCCCHHHHHHHHHHHhC
Q 031812 54 KRAGELSAAELDQLMVVVAN 73 (152)
Q Consensus 54 ~kv~~Ls~~qi~~L~~~i~~ 73 (152)
.....||++|+..|..+|..
T Consensus 50 Mp~~~ls~~ei~~l~~yl~~ 69 (71)
T 1c75_A 50 MPGGIAKGAEAEAVAAWLAE 69 (71)
T ss_dssp BCSCSSCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHh
Confidence 33378999999999999875
No 112
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=28.47 E-value=10 Score=32.00 Aligned_cols=21 Identities=14% Similarity=0.271 Sum_probs=19.1
Q ss_pred eeccccccchhhHHHHHHHhC
Q 031812 29 ALTSIKGIGRRLANIVCKKAD 49 (152)
Q Consensus 29 aLt~I~GIG~~~A~~Ic~~lg 49 (152)
.|+.++|||..+|..|.+.+.
T Consensus 81 ~l~~lpGIG~~ia~kI~E~l~ 101 (381)
T 1jms_A 81 DTEGIPCLGDKVKSIIEGIIE 101 (381)
T ss_dssp GGTTCSSCCHHHHHHHHHHHH
T ss_pred HHhcCCCCcHHHHHHHHHHHH
Confidence 499999999999999998876
No 113
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=28.29 E-value=14 Score=23.88 Aligned_cols=17 Identities=6% Similarity=0.163 Sum_probs=11.7
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031812 57 GELSAAELDQLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (152)
..++++|+..|+.+...
T Consensus 12 t~ft~~Q~~~Le~~F~~ 28 (80)
T 2cue_A 12 TSFTQEQIEALEKEFER 28 (80)
T ss_dssp CCSCHHHHHHHHHHHTT
T ss_pred CccCHHHHHHHHHHHhc
Confidence 34677777777777654
No 114
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A* 3r07_A
Probab=27.95 E-value=25 Score=27.52 Aligned_cols=41 Identities=12% Similarity=0.264 Sum_probs=30.4
Q ss_pred hHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCCCCccCCcccc
Q 031812 40 LANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFL 84 (152)
Q Consensus 40 ~A~~Ic~~lgi~~~~kv~~Ls~~qi~~L~~~i~~~~~~~ip~w~~ 84 (152)
....+++.++++ ....+||++|++.+.++.++ +|.-++|.+
T Consensus 214 l~~~~~~~~~~~--~~~~~lt~~e~~~~~~l~~~--ky~~~~W~~ 254 (262)
T 2c8m_A 214 LIRGFSETLHID--FREDTITEKEESLARELFDK--KYSTEEWNM 254 (262)
T ss_dssp HHHHHHHHHTCE--EEECCCCHHHHHHHHHHHHH--TTTSHHHHH
T ss_pred HHHHHHHHhCCC--ceecCCCHHHHHHHHHHHHh--hcCCccccC
Confidence 445566667754 45688999999999998874 477778876
No 115
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=27.57 E-value=15 Score=23.10 Aligned_cols=15 Identities=7% Similarity=0.151 Sum_probs=11.3
Q ss_pred CCCHHHHHHHHHHHh
Q 031812 58 ELSAAELDQLMVVVA 72 (152)
Q Consensus 58 ~Ls~~qi~~L~~~i~ 72 (152)
.+|.+|+..|+....
T Consensus 7 ~ft~~Q~~~Le~~F~ 21 (72)
T 1uhs_A 7 TMTEDQVEILEYNFN 21 (72)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 367788888887776
No 116
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.01 E-value=18 Score=23.06 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=14.1
Q ss_pred cCCCCCHHHHHHHHHHHhC
Q 031812 55 RAGELSAAELDQLMVVVAN 73 (152)
Q Consensus 55 kv~~Ls~~qi~~L~~~i~~ 73 (152)
+-..+|.+|+..|+.....
T Consensus 10 kr~~~t~~Ql~~Le~~F~~ 28 (75)
T 2da5_A 10 KYKERAPEQLRALESSFAQ 28 (75)
T ss_dssp CCCCCCHHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhc
Confidence 3455788888888887765
No 117
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=26.60 E-value=45 Score=20.32 Aligned_cols=16 Identities=25% Similarity=0.185 Sum_probs=14.7
Q ss_pred CCCHHHHHHHHHHHhC
Q 031812 58 ELSAAELDQLMVVVAN 73 (152)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (152)
.||++|+..|..+|..
T Consensus 65 ~ls~~ei~~l~~yl~~ 80 (82)
T 2exv_A 65 AVSDDEAQTLAKWVLS 80 (82)
T ss_dssp CCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 8999999999999975
No 118
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=26.32 E-value=34 Score=21.11 Aligned_cols=17 Identities=18% Similarity=0.302 Sum_probs=14.0
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031812 57 GELSAAELDQLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (152)
..+|++|+..|+.+.+.
T Consensus 8 t~ft~~Q~~~Le~~F~~ 24 (68)
T 1yz8_P 8 THFTSQQLQQLEATFQR 24 (68)
T ss_dssp CCCCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 45789999999988876
No 119
>3bc1_B Synaptotagmin-like protein 2; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Homo sapiens}
Probab=26.27 E-value=53 Score=20.72 Aligned_cols=34 Identities=21% Similarity=0.296 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHHHhCCCCccCCcccccccCCcCCCcceeeehhhHHHHHHHhHHHhHh
Q 031812 57 GELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKK 116 (152)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~~~~~~ip~w~~nr~~d~~tg~~~~~i~~dL~~~~~~~I~rl~~ 116 (152)
+.|+++|-+.|.++|.. ..+|+..-.+-|.+|+.
T Consensus 1 ~~l~e~E~~~IL~VL~R--------------------------D~~lr~~ee~RIrkLk~ 34 (59)
T 3bc1_B 1 GSPEFEEQEAIMKVLQR--------------------------DAALKRAEEERVRHLPE 34 (59)
T ss_dssp CCHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHGGG
T ss_pred CCCCHHHHHHHHHHHhh--------------------------HHHHhhChHHHHHHHHH
Confidence 45788999999999875 56777777777777764
No 120
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=26.22 E-value=11 Score=23.58 Aligned_cols=17 Identities=24% Similarity=0.071 Sum_probs=12.2
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031812 57 GELSAAELDQLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (152)
..+|++|+..|+.+.+.
T Consensus 12 t~ft~~Q~~~Le~~F~~ 28 (70)
T 2cra_A 12 IPYSKGQLRELEREYAA 28 (70)
T ss_dssp CCSCHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHh
Confidence 34678888888777764
No 121
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*
Probab=26.10 E-value=35 Score=20.95 Aligned_cols=17 Identities=12% Similarity=0.188 Sum_probs=14.7
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031812 57 GELSAAELDQLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (152)
..||++|+..|..+|..
T Consensus 62 ~~Ls~~ei~~l~~Yl~s 78 (79)
T 1c53_A 62 KRYSDEEMKAMADYMSK 78 (79)
T ss_pred hhCCHHHHHHHHHHHHh
Confidence 47999999999999863
No 122
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A*
Probab=26.01 E-value=20 Score=31.38 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=23.0
Q ss_pred eeeccccccchhhHHHHHHHhCCCCCCcC
Q 031812 28 FALTSIKGIGRRLANIVCKKADVDMNKRA 56 (152)
Q Consensus 28 ~aLt~I~GIG~~~A~~Ic~~lgi~~~~kv 56 (152)
.-++.+.|||..++..+.+.+||++-..+
T Consensus 307 lPV~~l~GIG~~t~~~L~~llGI~~~~ti 335 (520)
T 3mfi_A 307 FEITSFWTLGGVLGKELIDVLDLPHENSI 335 (520)
T ss_dssp CCGGGSTTCSSHHHHHHHHHTTCCSSSHH
T ss_pred CcHHHhcCCCHHHHHHHHHhcCCCcccch
Confidence 45678999999999999988899543333
No 123
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=25.90 E-value=35 Score=27.76 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=25.6
Q ss_pred eccccccchhhHHHHHHHhCCCCCCcCCCCCHHHHH
Q 031812 30 LTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELD 65 (152)
Q Consensus 30 Lt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~ 65 (152)
++.+.|||..++..+ +.+||..-.-+-.++.+++.
T Consensus 181 v~~l~GiG~~~~~~L-~~~Gi~t~~dL~~~~~~~L~ 215 (354)
T 3bq0_A 181 IDEIPGIGSVLARRL-NELGIQKLRDILSKNYNELE 215 (354)
T ss_dssp STTSTTCCHHHHHHH-TTTTCCBGGGGGGSCHHHHH
T ss_pred cccccCcCHHHHHHH-HHcCCccHHHHhcCCHHHHH
Confidence 688999999998885 78999864445555555443
No 124
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=25.79 E-value=45 Score=20.31 Aligned_cols=17 Identities=18% Similarity=0.401 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031812 57 GELSAAELDQLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (152)
+.||++|+..|..+|..
T Consensus 64 ~~ls~~ei~~l~~yl~~ 80 (86)
T 3ph2_B 64 GRLTDDQIAAVAAYVLD 80 (86)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 57999999999999864
No 125
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=25.65 E-value=45 Score=20.44 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=15.6
Q ss_pred cCCCCCHHHHHHHHHHHhC
Q 031812 55 RAGELSAAELDQLMVVVAN 73 (152)
Q Consensus 55 kv~~Ls~~qi~~L~~~i~~ 73 (152)
....||++|+..|..+|..
T Consensus 60 p~~~Lsd~ei~~l~~yl~~ 78 (80)
T 1ayg_A 60 PPQNVTDAEAKQLAQWILS 78 (80)
T ss_dssp CCCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 3348999999999999864
No 126
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=25.50 E-value=12 Score=22.82 Aligned_cols=16 Identities=25% Similarity=0.110 Sum_probs=11.6
Q ss_pred CCCHHHHHHHHHHHhC
Q 031812 58 ELSAAELDQLMVVVAN 73 (152)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (152)
.+|++|+..|+.+.+.
T Consensus 9 ~ft~~q~~~Le~~F~~ 24 (62)
T 2vi6_A 9 VFSQAQLCALKDRFQK 24 (62)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4677888888777765
No 127
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.38 E-value=12 Score=24.08 Aligned_cols=16 Identities=13% Similarity=0.030 Sum_probs=12.1
Q ss_pred CCCHHHHHHHHHHHhC
Q 031812 58 ELSAAELDQLMVVVAN 73 (152)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (152)
.++.+|+..|+.+...
T Consensus 23 ~ft~~Q~~~Le~~F~~ 38 (80)
T 2dmt_A 23 VFTELQLMGLEKRFEK 38 (80)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4788888888777765
No 128
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=25.15 E-value=23 Score=21.98 Aligned_cols=18 Identities=11% Similarity=0.058 Sum_probs=13.7
Q ss_pred CCCCCHHHHHHHHHHHhC
Q 031812 56 AGELSAAELDQLMVVVAN 73 (152)
Q Consensus 56 v~~Ls~~qi~~L~~~i~~ 73 (152)
-..+|++|+..|+.+.+.
T Consensus 11 Rt~ft~~q~~~Le~~F~~ 28 (70)
T 2da1_A 11 RTRITDDQLRVLRQYFDI 28 (70)
T ss_dssp SCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 345788898888888765
No 129
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=25.05 E-value=46 Score=20.26 Aligned_cols=17 Identities=35% Similarity=0.346 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031812 57 GELSAAELDQLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (152)
..||++|+..|..+|..
T Consensus 69 ~~ls~~ei~~l~~yl~s 85 (87)
T 2zxy_A 69 KGLSDAELKALADFILS 85 (87)
T ss_dssp GGCCHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHh
Confidence 47999999999999974
No 130
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.88 E-value=32 Score=21.38 Aligned_cols=17 Identities=18% Similarity=0.044 Sum_probs=12.5
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031812 57 GELSAAELDQLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (152)
..+|.+|+..|+.+...
T Consensus 12 t~ft~~Q~~~Le~~F~~ 28 (70)
T 2djn_A 12 TIYSSFQLAALQRRFQK 28 (70)
T ss_dssp CSSCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHcC
Confidence 45678888888877765
No 131
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=24.66 E-value=34 Score=27.90 Aligned_cols=37 Identities=8% Similarity=0.134 Sum_probs=26.5
Q ss_pred eeccccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHH
Q 031812 29 ALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQ 66 (152)
Q Consensus 29 aLt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~~ 66 (152)
-+..+.|||..++..+ +.+||..-.-+..++.+++.+
T Consensus 179 pv~~l~GiG~~~~~~L-~~~GI~Ti~dL~~~~~~~L~~ 215 (356)
T 4dez_A 179 PPDALWGVGPKTTKKL-AAMGITTVADLAVTDPSVLTT 215 (356)
T ss_dssp CGGGSTTCCHHHHHHH-HHTTCCSHHHHHTSCHHHHHH
T ss_pred cHHHHcCCchhHHHHH-HHcCCCeecccccCCHHHHHH
Confidence 3578999999999886 789998644444456665543
No 132
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=24.57 E-value=46 Score=22.78 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=20.1
Q ss_pred eeeccccccchhhHHHHHHHhCCCC
Q 031812 28 FALTSIKGIGRRLANIVCKKADVDM 52 (152)
Q Consensus 28 ~aLt~I~GIG~~~A~~Ic~~lgi~~ 52 (152)
-.++.+.|||+..+..+-+ .|++.
T Consensus 18 K~V~evpGIG~~~~~~L~~-~Gf~k 41 (89)
T 1ci4_A 18 KPVGSLAGIGEVLGKKLEE-RGFDK 41 (89)
T ss_dssp CCGGGSTTCCHHHHHHHHH-TTCCS
T ss_pred CCcccCCCcCHHHHHHHHH-cCccH
Confidence 3578999999999999876 77775
No 133
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3
Probab=24.23 E-value=57 Score=26.77 Aligned_cols=44 Identities=18% Similarity=0.187 Sum_probs=31.8
Q ss_pred hhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCCCCccCCccccccc
Q 031812 39 RLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQ 87 (152)
Q Consensus 39 ~~A~~Ic~~lgi~~~~kv~~Ls~~qi~~L~~~i~~~~~~~ip~w~~nr~ 87 (152)
.....+++.+|... . ..||++|+..+.+..++ +|.-++|.+.+-
T Consensus 212 ~l~~~f~~~~~~~~--~-~~lt~~e~~~i~~l~~~--ky~s~eW~~g~~ 255 (341)
T 1vqz_A 212 LLLEYMKKEYPEMT--E-YVFSEEELAEINRIKDT--KFGTWDWNYGKS 255 (341)
T ss_dssp HHHHHHHHHCTTCE--E-CCCCHHHHHHHHHHHHH--TTTCHHHHTCCC
T ss_pred HHHHHHHHhcCCCC--C-CCCCHHHHHHHHHHHHH--hcCCcccccCCC
Confidence 34556777777651 2 78999999999998864 477788888543
No 134
>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1
Probab=24.05 E-value=50 Score=20.57 Aligned_cols=17 Identities=12% Similarity=0.261 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031812 57 GELSAAELDQLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (152)
+.||++|+..|..+|..
T Consensus 68 ~~ls~~ei~~l~~yl~~ 84 (91)
T 1ls9_A 68 DRLDEDDIEAVSNYVYD 84 (91)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHH
Confidence 47999999999999975
No 135
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=23.89 E-value=73 Score=26.26 Aligned_cols=38 Identities=18% Similarity=0.320 Sum_probs=32.9
Q ss_pred cchhhHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 031812 36 IGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVAN 73 (152)
Q Consensus 36 IG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~~L~~~i~~ 73 (152)
+-..++..+++.+|++++.+..++++++.+.|...+++
T Consensus 331 ~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~l~~~~~~ 368 (447)
T 2i0z_A 331 VPERYFLFLLEKNEIDGSEQAGQVSHEKIRALVKDFKE 368 (447)
T ss_dssp SCHHHHHHHHHHTTCCTTSBGGGSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCCcCCchhhCCHHHHHHHHHHhhC
Confidence 34557888899999999999999999999999888876
No 136
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1
Probab=23.71 E-value=52 Score=20.17 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=14.6
Q ss_pred CCCHHHHHHHHHHHhC
Q 031812 58 ELSAAELDQLMVVVAN 73 (152)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (152)
.||++|+..|..+|..
T Consensus 66 ~ls~~ei~~l~~yl~~ 81 (88)
T 3dmi_A 66 RLSDEEIANVAAYVLA 81 (88)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6999999999999975
No 137
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=23.52 E-value=28 Score=21.71 Aligned_cols=15 Identities=0% Similarity=-0.075 Sum_probs=8.6
Q ss_pred CCCHHHHHHHHHHHh
Q 031812 58 ELSAAELDQLMVVVA 72 (152)
Q Consensus 58 ~Ls~~qi~~L~~~i~ 72 (152)
-++.+++..|.+++.
T Consensus 4 ~f~~~~~~~L~~~f~ 18 (67)
T 3k2a_A 4 IFPKVATNIMRAWLF 18 (67)
T ss_dssp --CHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 456666666666665
No 138
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=23.45 E-value=22 Score=32.41 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=29.0
Q ss_pred cccccchhhHHHHHHHhCCCCCCcCCCCCHHHHH
Q 031812 32 SIKGIGRRLANIVCKKADVDMNKRAGELSAAELD 65 (152)
Q Consensus 32 ~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~ 65 (152)
.|.|+|+.++.++.+..++..-.-+-.|+.+++.
T Consensus 445 dI~GLG~k~i~~L~~~g~I~~~~DL~~L~~e~L~ 478 (667)
T 1dgs_A 445 DIEGLGEKLIERLLEKGLVRDVADLYHLRKEDLL 478 (667)
T ss_dssp CCTTCCHHHHHHHHHTTSCSSGGGGGGGCCHHHH
T ss_pred CcCcCCHHHHHHHHHcCCCCCHHHHHhcCHHHHh
Confidence 6999999999999999998887777778766653
No 139
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=23.42 E-value=32 Score=20.68 Aligned_cols=17 Identities=18% Similarity=0.208 Sum_probs=12.6
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031812 57 GELSAAELDQLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (152)
..+|++|+..|+.+.+.
T Consensus 8 t~ft~~Q~~~Le~~F~~ 24 (61)
T 2hdd_A 8 TAFSSEQLARLKREFNE 24 (61)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 45788888888877765
No 140
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Probab=23.42 E-value=48 Score=20.39 Aligned_cols=17 Identities=29% Similarity=0.569 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031812 57 GELSAAELDQLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (152)
..||++|+..|..+|..
T Consensus 70 ~~ls~~ei~~l~~yl~~ 86 (93)
T 3dr0_A 70 GRLSDADIANVAAYIAD 86 (93)
T ss_dssp TTBCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 57999999999999974
No 141
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=23.15 E-value=38 Score=20.77 Aligned_cols=17 Identities=18% Similarity=0.114 Sum_probs=14.8
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031812 57 GELSAAELDQLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (152)
..||++|+..|..+|..
T Consensus 63 ~~Ls~~ei~~l~~yl~~ 79 (81)
T 1a56_A 63 VNVSDADAKALADWILT 79 (81)
T ss_dssp CSSSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 58999999999999863
No 142
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=22.82 E-value=18 Score=33.57 Aligned_cols=37 Identities=19% Similarity=0.348 Sum_probs=24.4
Q ss_pred ccchhhhhhhcCcccCCCeEeeeeeccccccchhhHHHHHHHhC
Q 031812 6 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKAD 49 (152)
Q Consensus 6 ~~~~~~~vri~~~~l~~~k~v~~aLt~I~GIG~~~A~~Ic~~lg 49 (152)
+++|-.+.=+.|=..|. +-.|+|||+++|..+++..|
T Consensus 176 p~q~id~~~L~GD~sDn-------ipGVpGIG~KtA~kLl~~~g 212 (832)
T 1bgx_T 176 PDQWADYRALTGDESDN-------LPGVKGIGEKTARKLLEEWG 212 (832)
T ss_dssp GGGTTTTTTSSCCSSSC-------CCCCCCSSSCTTTTTGGGTT
T ss_pred HHHHHHHHHhcCCcccc-------CCCCCCcCchHHHHHHHHCC
Confidence 34555555566611111 12489999999999999876
No 143
>3o0r_C Nitric oxide reductase subunit C; oxidoreductase, electron transport, heme, iron, membrane, CY membrane; HET: HEM HEC; 2.70A {Pseudomonas aeruginosa}
Probab=22.80 E-value=46 Score=22.94 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=20.0
Q ss_pred CcCCCCCHHHHHHHHHHHhCCCCccCCcccc
Q 031812 54 KRAGELSAAELDQLMVVVANPRQFKIPDWFL 84 (152)
Q Consensus 54 ~kv~~Ls~~qi~~L~~~i~~~~~~~ip~w~~ 84 (152)
...-.||++|+..|..+|.......-+.|..
T Consensus 112 Mp~~~Ls~~ei~~l~ayl~~l~~~~~~~wP~ 142 (146)
T 3o0r_C 112 MPQFHLSEGQVDDLAEFLKWSSKIDTNQWPP 142 (146)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTTSCCSSCSS
T ss_pred CCCCCcCHHHHHHHHHHHHHhccCccCCCCC
Confidence 3334499999999999997532233334543
No 144
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=22.77 E-value=56 Score=20.08 Aligned_cols=17 Identities=24% Similarity=0.515 Sum_probs=14.8
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031812 57 GELSAAELDQLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (152)
+.||++|+..|..+|..
T Consensus 67 ~~ls~~ei~~l~~yl~~ 83 (89)
T 1f1f_A 67 GRLSPLQIEDVAAYVVD 83 (89)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 46999999999999864
No 145
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1
Probab=22.75 E-value=57 Score=20.29 Aligned_cols=17 Identities=29% Similarity=0.346 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031812 57 GELSAAELDQLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (152)
..||++|+..|..+|..
T Consensus 65 ~~ls~~ei~~l~~yl~~ 81 (87)
T 1cno_A 65 TALSDADIANLAAYYAS 81 (87)
T ss_dssp TTCCHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHh
Confidence 47999999999999975
No 146
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=22.72 E-value=56 Score=19.79 Aligned_cols=16 Identities=13% Similarity=0.212 Sum_probs=14.5
Q ss_pred CCCHHHHHHHHHHHhC
Q 031812 58 ELSAAELDQLMVVVAN 73 (152)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (152)
.||++|+..|..+|..
T Consensus 64 ~ls~~ei~~l~~yl~~ 79 (85)
T 1gdv_A 64 RLVDEDIEDAANYVLS 79 (85)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7999999999999864
No 147
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=22.60 E-value=41 Score=25.39 Aligned_cols=29 Identities=0% Similarity=-0.094 Sum_probs=25.6
Q ss_pred HHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 031812 45 CKKADVDMNKRAGELSAAELDQLMVVVAN 73 (152)
Q Consensus 45 c~~lgi~~~~kv~~Ls~~qi~~L~~~i~~ 73 (152)
++.+++++..++.+|+.+|+..|-+++..
T Consensus 212 ~~~~~~~~~~r~~~l~~~~f~~l~~~~~~ 240 (245)
T 1yub_A 212 HQAMKHAKVNNLSTITYEQVLSIFNSYLL 240 (245)
T ss_dssp HHHHHHTTCSCTTSCCSHHHHHHHHHHHH
T ss_pred HHHcCCCCCCChhhCCHHHHHHHHHHHHH
Confidence 57889999999999999999999888753
No 148
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=22.40 E-value=42 Score=20.03 Aligned_cols=16 Identities=13% Similarity=0.121 Sum_probs=10.6
Q ss_pred CCCHHHHHHHHHHHhC
Q 031812 58 ELSAAELDQLMVVVAN 73 (152)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (152)
.++++|+..|+.++..
T Consensus 4 ~ft~~q~~~Le~~f~~ 19 (60)
T 1k61_A 4 RFTKENVRILESWFAK 19 (60)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4667777777776654
No 149
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=22.40 E-value=31 Score=26.10 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=17.6
Q ss_pred eeccccccchhhHHHHHHHhC
Q 031812 29 ALTSIKGIGRRLANIVCKKAD 49 (152)
Q Consensus 29 aLt~I~GIG~~~A~~Ic~~lg 49 (152)
.|..+.|||..+|..|...+.
T Consensus 195 ~L~~v~GiG~~~a~~i~~~~~ 215 (219)
T 2bgw_A 195 EISKVEGIGEKRAEEIKKILM 215 (219)
T ss_dssp HHHHSTTCCHHHHHHHHHHHH
T ss_pred HHhhCCCCCHHHHHHHHHHHh
Confidence 478899999999999987764
No 150
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.31 E-value=9.6 Score=25.16 Aligned_cols=30 Identities=27% Similarity=0.555 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHHHhCCCCccCCcccccccC
Q 031812 58 ELSAAELDQLMVVVANPRQFKIPDWFLNRQK 88 (152)
Q Consensus 58 ~Ls~~qi~~L~~~i~~~~~~~ip~w~~nr~~ 88 (152)
.-+.+|+.+|.+.+.=|.. -|-.||-|||.
T Consensus 29 ~Ps~eei~~LA~~lgL~~~-VVrVWFqNrRa 58 (71)
T 2da7_A 29 EPNSDELLKISIAVGLPQE-FVKEWFEQRKV 58 (71)
T ss_dssp SCCHHHHHHHHHHHTCCHH-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCHH-HHHHHHhhccc
Confidence 3567888888887754321 24569988773
No 151
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=22.23 E-value=15 Score=23.43 Aligned_cols=17 Identities=12% Similarity=-0.058 Sum_probs=12.4
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031812 57 GELSAAELDQLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (152)
..+|.+|+..|+.+...
T Consensus 14 t~ft~~Q~~~Le~~F~~ 30 (77)
T 1nk2_P 14 VLFTKAQTYELERRFRQ 30 (77)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhh
Confidence 34688888888777765
No 152
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=22.17 E-value=16 Score=23.13 Aligned_cols=15 Identities=7% Similarity=0.023 Sum_probs=11.6
Q ss_pred CCCHHHHHHHHHHHh
Q 031812 58 ELSAAELDQLMVVVA 72 (152)
Q Consensus 58 ~Ls~~qi~~L~~~i~ 72 (152)
.+|++|+..|+.+..
T Consensus 8 ~ft~~Q~~~Le~~F~ 22 (73)
T 2hi3_A 8 GPTEDQVEILEYNFN 22 (73)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 467888888888876
No 153
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=22.05 E-value=29 Score=20.78 Aligned_cols=16 Identities=19% Similarity=0.075 Sum_probs=10.9
Q ss_pred CCCHHHHHHHHHHHhC
Q 031812 58 ELSAAELDQLMVVVAN 73 (152)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (152)
.+|.+|+..|+.+...
T Consensus 11 ~ft~~q~~~Le~~f~~ 26 (61)
T 1akh_A 11 SISPQARAFLEEVFRR 26 (61)
T ss_dssp -CCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4677777777777664
No 154
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=21.80 E-value=29 Score=21.52 Aligned_cols=16 Identities=6% Similarity=-0.178 Sum_probs=12.3
Q ss_pred CCCHHHHHHHHHHHhC
Q 031812 58 ELSAAELDQLMVVVAN 73 (152)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (152)
.+|++|+..|+...+.
T Consensus 8 ~ft~~Q~~~Le~~F~~ 23 (68)
T 1ahd_P 8 TYTRYQTLELEKEFHF 23 (68)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHcc
Confidence 4788888888887765
No 155
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.74 E-value=30 Score=21.47 Aligned_cols=17 Identities=12% Similarity=0.198 Sum_probs=12.5
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031812 57 GELSAAELDQLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (152)
..+|++|+..|+.+.+.
T Consensus 12 t~ft~~q~~~Le~~F~~ 28 (70)
T 2dmu_A 12 TIFTDEQLEALENLFQE 28 (70)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 34788888888877765
No 156
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=21.71 E-value=16 Score=23.56 Aligned_cols=17 Identities=18% Similarity=0.022 Sum_probs=12.4
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031812 57 GELSAAELDQLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (152)
..++.+|+..|+.+...
T Consensus 27 t~ft~~Q~~~Le~~F~~ 43 (84)
T 2kt0_A 27 TVFSSTQLCVLNDRFQR 43 (84)
T ss_dssp SCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 34788888888777764
No 157
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=21.44 E-value=31 Score=20.71 Aligned_cols=15 Identities=13% Similarity=0.319 Sum_probs=10.3
Q ss_pred CCHHHHHHHHHHHhC
Q 031812 59 LSAAELDQLMVVVAN 73 (152)
Q Consensus 59 Ls~~qi~~L~~~i~~ 73 (152)
+|++|+..|+...+.
T Consensus 6 ft~~Q~~~Le~~F~~ 20 (60)
T 3a02_A 6 FTSFQLEELEKAFSR 20 (60)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHc
Confidence 567777777776654
No 158
>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens}
Probab=21.35 E-value=58 Score=20.01 Aligned_cols=16 Identities=13% Similarity=0.052 Sum_probs=14.4
Q ss_pred CCCHHHHHHHHHHHhC
Q 031812 58 ELSAAELDQLMVVVAN 73 (152)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (152)
.||++|+..|..+|..
T Consensus 67 ~ls~~ei~~l~~yi~~ 82 (85)
T 3cu4_A 67 MIPPADALKIGEYVVA 82 (85)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6999999999999864
No 159
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=21.28 E-value=31 Score=20.46 Aligned_cols=15 Identities=13% Similarity=0.071 Sum_probs=9.9
Q ss_pred CCHHHHHHHHHHHhC
Q 031812 59 LSAAELDQLMVVVAN 73 (152)
Q Consensus 59 Ls~~qi~~L~~~i~~ 73 (152)
+|++|+..|+...+.
T Consensus 4 ft~~Ql~~Le~~F~~ 18 (56)
T 3a03_A 4 FSRSQVLELERRFLR 18 (56)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHh
Confidence 566777777766654
No 160
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=21.21 E-value=1e+02 Score=20.62 Aligned_cols=20 Identities=5% Similarity=0.016 Sum_probs=14.4
Q ss_pred ccchhhHHHHHHHhCCCCCC
Q 031812 35 GIGRRLANIVCKKADVDMNK 54 (152)
Q Consensus 35 GIG~~~A~~Ic~~lgi~~~~ 54 (152)
.+...+...||+.+|++++.
T Consensus 51 ~p~~~~l~~ia~~l~v~~~~ 70 (126)
T 3ivp_A 51 HPSLQVLYDLVSLLNVSVDE 70 (126)
T ss_dssp CCCHHHHHHHHHHHTCCSHH
T ss_pred CCCHHHHHHHHHHHCcCHHH
Confidence 35566777888888887654
No 161
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=21.19 E-value=31 Score=21.43 Aligned_cols=17 Identities=12% Similarity=-0.033 Sum_probs=12.6
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031812 57 GELSAAELDQLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (152)
..+|.+|+..|+.+.+.
T Consensus 12 ~~ft~~q~~~Le~~F~~ 28 (70)
T 2e1o_A 12 VRFSNDQTIELEKKFET 28 (70)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 34788888888877765
No 162
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=21.11 E-value=33 Score=29.01 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=25.1
Q ss_pred eccccccchhhHHHHHHHhCCCCCCcCCCCCHHHHH
Q 031812 30 LTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELD 65 (152)
Q Consensus 30 Lt~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~ 65 (152)
++.+.|||..++..+ +.+||..=.-+-.++.+++.
T Consensus 236 v~~l~GIG~~t~~~L-~~lGI~TigdLa~~~~~~L~ 270 (420)
T 3osn_A 236 IKEIPGIGYKTAKCL-EALGINSVRDLQTFSPKILE 270 (420)
T ss_dssp GGGSTTCCHHHHHHH-HHTTCCSHHHHHHSCHHHHH
T ss_pred HHHccCCCHHHHHHH-HHhCCCcHHHHhhCCHHHHH
Confidence 788999999999887 67999753333344555554
No 163
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.11 E-value=31 Score=21.94 Aligned_cols=17 Identities=12% Similarity=0.081 Sum_probs=11.7
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031812 57 GELSAAELDQLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (152)
..++++|+..|+.+.+.
T Consensus 12 t~ft~~Q~~~Le~~F~~ 28 (80)
T 2dmq_A 12 TSFKHHQLRTMKSYFAI 28 (80)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 34677777777777654
No 164
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=21.07 E-value=61 Score=20.93 Aligned_cols=20 Identities=30% Similarity=0.325 Sum_probs=13.6
Q ss_pred CcCCCCCHHHHHHHHHHHhC
Q 031812 54 KRAGELSAAELDQLMVVVAN 73 (152)
Q Consensus 54 ~kv~~Ls~~qi~~L~~~i~~ 73 (152)
.+-..++.+++..|++++..
T Consensus 9 k~R~~~s~~q~~~L~~~f~~ 28 (83)
T 2dmn_A 9 KRKGNLPAESVKILRDWMYK 28 (83)
T ss_dssp CCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHH
Confidence 34455788888888877654
No 165
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=20.92 E-value=53 Score=19.98 Aligned_cols=17 Identities=24% Similarity=0.216 Sum_probs=12.2
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031812 57 GELSAAELDQLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (152)
..+|++|+..|+.+.+.
T Consensus 8 t~ft~~q~~~Le~~F~~ 24 (66)
T 1bw5_A 8 TVLNEKQLHTLRTCYAA 24 (66)
T ss_dssp CCCSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 44677888888777765
No 166
>3exc_X Uncharacterized protein; ferredoxin fold, double split beta-alpha-beta fold, dimer, C aspartate, RNA'ASE, hydrolase; 2.25A {Sulfolobus solfataricus} SCOP: d.58.58.0
Probab=20.92 E-value=16 Score=24.65 Aligned_cols=53 Identities=21% Similarity=0.251 Sum_probs=34.3
Q ss_pred hhhhhhhcCcccCCCeEeeeeeccccccchhhHHHHHHHhCC---CCCCcCCCCCHHHHHHHHHHHhC
Q 031812 9 FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADV---DMNKRAGELSAAELDQLMVVVAN 73 (152)
Q Consensus 9 ~~~~vri~~~~l~~~k~v~~aLt~I~GIG~~~A~~Ic~~lgi---~~~~kv~~Ls~~qi~~L~~~i~~ 73 (152)
|+.|..|.--||++++. ......+|+..|+ -.+.-.++||+.++..|...|++
T Consensus 1 ~~~M~vlV~YDI~~~kr------------r~kv~k~l~~yGl~rvQ~SVFe~~lt~~~~~~L~~~L~~ 56 (91)
T 3exc_X 1 FQGMKLLVVYDVSDDSK------------RNKLANNLKKLGLERIQRSAFEGDMDSQRMKDLVRVVKL 56 (91)
T ss_dssp ---CEEEEEEECCSHHH------------HHHHHHHHHHTTCEEEETTEEEEECC--CHHHHHHHHHH
T ss_pred CCceEEEEEEeCCCchH------------HHHHHHHHHHhCCccceeeEEEEECCHHHHHHHHHHHHH
Confidence 45566666667765542 2667888999986 33445678999999999888875
No 167
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=20.60 E-value=32 Score=21.24 Aligned_cols=17 Identities=12% Similarity=0.079 Sum_probs=12.4
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031812 57 GELSAAELDQLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (152)
..+|++|+..|+.+.+.
T Consensus 12 t~ft~~q~~~Le~~F~~ 28 (70)
T 2da2_A 12 TRFTDYQLRVLQDFFDA 28 (70)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 34678888888777765
No 168
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=20.59 E-value=24 Score=23.08 Aligned_cols=18 Identities=6% Similarity=-0.184 Sum_probs=13.8
Q ss_pred CCCCCHHHHHHHHHHHhC
Q 031812 56 AGELSAAELDQLMVVVAN 73 (152)
Q Consensus 56 v~~Ls~~qi~~L~~~i~~ 73 (152)
-..+|.+|+..|+...+.
T Consensus 32 Rt~ft~~Ql~~Le~~F~~ 49 (88)
T 2r5y_A 32 RTSYTRYQTLELEKEFHF 49 (88)
T ss_dssp CCCCCHHHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHHHHhc
Confidence 345788899888888765
No 169
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=20.39 E-value=44 Score=30.49 Aligned_cols=36 Identities=19% Similarity=0.337 Sum_probs=30.4
Q ss_pred ccccccchhhHHHHHHHhCCCCCCcCCCCCHHHHHH
Q 031812 31 TSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQ 66 (152)
Q Consensus 31 t~I~GIG~~~A~~Ic~~lgi~~~~kv~~Ls~~qi~~ 66 (152)
-.|.|+|+.++.++.+...|..-.-+..|+.+++..
T Consensus 449 ldI~GLG~k~i~~L~~~g~I~~~aDL~~L~~~~L~~ 484 (671)
T 2owo_A 449 MDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTG 484 (671)
T ss_dssp TCCTTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHT
T ss_pred cCCCCCCHHHHHHHHHcCCCCCHHHHHhhCHHHhhc
Confidence 589999999999999999988877788888776543
No 170
>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*
Probab=20.36 E-value=67 Score=19.80 Aligned_cols=17 Identities=12% Similarity=0.169 Sum_probs=15.3
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031812 57 GELSAAELDQLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (152)
..||++|+..|..+|..
T Consensus 56 ~~ls~~ei~~l~~yl~~ 72 (80)
T 1wve_C 56 SYVDDESLTQVAEYLSS 72 (80)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 47999999999999975
No 171
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=20.24 E-value=65 Score=19.45 Aligned_cols=16 Identities=19% Similarity=0.121 Sum_probs=14.4
Q ss_pred CCCHHHHHHHHHHHhC
Q 031812 58 ELSAAELDQLMVVVAN 73 (152)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (152)
.||++|+..|..+|..
T Consensus 65 ~ls~~ei~~l~~yl~~ 80 (82)
T 1cch_A 65 PVTEEEAKILAEWVLS 80 (82)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 7999999999999864
No 172
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=20.22 E-value=47 Score=19.37 Aligned_cols=16 Identities=19% Similarity=0.094 Sum_probs=10.2
Q ss_pred CCCHHHHHHHHHHHhC
Q 031812 58 ELSAAELDQLMVVVAN 73 (152)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (152)
.+|.+|+..|+...+.
T Consensus 8 ~~t~~q~~~Le~~F~~ 23 (58)
T 3rkq_A 8 LFSQAQVYELERRFKQ 23 (58)
T ss_dssp CCCHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHH
Confidence 3566777777666654
No 173
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=20.17 E-value=53 Score=22.41 Aligned_cols=24 Identities=4% Similarity=0.141 Sum_probs=19.8
Q ss_pred eeccccccchhhHHHHHHHhCCCC
Q 031812 29 ALTSIKGIGRRLANIVCKKADVDM 52 (152)
Q Consensus 29 aLt~I~GIG~~~A~~Ic~~lgi~~ 52 (152)
.|..--|+...+..++|+++|++.
T Consensus 44 elA~~~~vS~aTv~Rf~kklG~~g 67 (111)
T 2o3f_A 44 EISALANSSDAAVIRLCXSLGLKG 67 (111)
T ss_dssp HHHHHTTCCHHHHHHHHHHTTCSS
T ss_pred HHHHHHCCCHHHHHHHHHHcCCCC
Confidence 355667899999999999999874
Done!