Query 031813
Match_columns 152
No_of_seqs 112 out of 1037
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 08:47:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031813.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031813hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz6_M 40S ribosomal protein S 100.0 1.8E-68 6.2E-73 407.3 8.0 152 1-152 1-152 (152)
2 2xzm_M RPS18E; ribosome, trans 100.0 1.5E-67 5.2E-72 403.4 5.3 152 1-152 1-154 (155)
3 3j20_O 30S ribosomal protein S 100.0 1.5E-66 5.1E-71 395.3 4.0 146 7-152 2-147 (148)
4 3u5c_S 40S ribosomal protein S 100.0 8E-64 2.7E-68 379.5 9.8 144 1-144 1-146 (146)
5 2vqe_M 30S ribosomal protein S 100.0 1.4E-48 4.7E-53 289.6 4.1 111 12-144 1-111 (126)
6 3r8n_M 30S ribosomal protein S 100.0 2.2E-47 7.6E-52 279.0 6.6 109 13-144 1-109 (114)
7 3bbn_M Ribosomal protein S13; 100.0 2.4E-44 8.1E-49 271.5 -3.0 109 2-144 30-144 (145)
8 1mu5_A Type II DNA topoisomera 98.7 8.1E-09 2.8E-13 90.3 5.6 107 8-122 238-348 (471)
9 2zbk_B Type 2 DNA topoisomeras 98.2 7.8E-07 2.7E-11 78.8 5.1 90 24-122 253-347 (530)
10 1ee8_A MUTM (FPG) protein; bet 96.2 0.0047 1.6E-07 50.1 4.9 52 22-73 142-196 (266)
11 1k3x_A Endonuclease VIII; hydr 96.2 0.0047 1.6E-07 49.9 4.8 50 24-73 151-203 (262)
12 3u6p_A Formamidopyrimidine-DNA 96.2 0.0048 1.6E-07 50.2 4.8 52 22-73 154-208 (273)
13 2xzf_A Formamidopyrimidine-DNA 96.2 0.0049 1.7E-07 50.0 4.8 52 22-73 152-206 (271)
14 1k82_A Formamidopyrimidine-DNA 96.2 0.0048 1.6E-07 50.0 4.7 52 22-73 149-203 (268)
15 3twl_A Formamidopyrimidine-DNA 96.1 0.0063 2.2E-07 50.4 4.9 52 22-73 167-221 (310)
16 3w0f_A Endonuclease 8-like 3; 96.0 0.0065 2.2E-07 50.0 4.7 51 23-73 174-227 (287)
17 3vk8_A Probable formamidopyrim 96.0 0.0064 2.2E-07 50.0 4.6 52 22-73 153-208 (295)
18 2a1j_A DNA repair endonuclease 92.9 0.046 1.6E-06 34.8 1.9 37 29-67 5-41 (63)
19 3fut_A Dimethyladenosine trans 92.4 0.12 4.1E-06 41.5 4.2 63 8-73 207-269 (271)
20 1kft_A UVRC, excinuclease ABC 92.2 0.05 1.7E-06 35.6 1.4 33 17-49 13-45 (78)
21 2q2e_B Type 2 DNA topoisomeras 92.0 0.032 1.1E-06 50.3 0.3 87 27-122 260-350 (621)
22 1x2i_A HEF helicase/nuclease; 90.5 0.11 3.9E-06 32.9 1.8 51 24-74 10-69 (75)
23 1tdh_A NEI endonuclease VIII-l 89.8 0.035 1.2E-06 47.0 -1.5 40 23-62 158-200 (364)
24 1z00_A DNA excision repair pro 89.7 0.22 7.4E-06 33.1 2.7 50 25-74 16-74 (89)
25 1z00_B DNA repair endonuclease 89.2 0.12 4.1E-06 34.9 1.2 43 23-67 13-55 (84)
26 1qyr_A KSGA, high level kasuga 88.6 0.34 1.2E-05 38.3 3.6 57 8-72 193-249 (252)
27 3arc_U Photosystem II 12 kDa e 86.2 0.57 2E-05 32.4 3.2 54 20-73 18-74 (97)
28 1s5l_U Photosystem II 12 kDa e 85.9 0.5 1.7E-05 34.7 2.8 54 20-73 55-111 (134)
29 2a1j_B DNA excision repair pro 85.8 0.32 1.1E-05 32.6 1.6 26 24-49 28-53 (91)
30 2duy_A Competence protein come 85.5 0.36 1.2E-05 31.1 1.7 28 22-49 21-48 (75)
31 3ftd_A Dimethyladenosine trans 85.4 0.59 2E-05 36.7 3.2 54 8-73 193-246 (249)
32 3uzu_A Ribosomal RNA small sub 82.3 0.28 9.5E-06 39.5 0.2 58 8-73 217-274 (279)
33 3tqs_A Ribosomal RNA small sub 80.8 0.45 1.5E-05 37.7 0.9 56 8-71 199-254 (255)
34 3fhg_A Mjogg, N-glycosylase/DN 80.3 1.4 4.7E-05 33.9 3.5 43 25-71 114-156 (207)
35 1ixr_A Holliday junction DNA h 78.5 0.34 1.2E-05 37.3 -0.5 59 15-73 59-129 (191)
36 3gru_A Dimethyladenosine trans 76.7 0.76 2.6E-05 37.3 1.1 63 9-73 215-287 (295)
37 2ztd_A Holliday junction ATP-d 75.6 1.1 3.9E-05 35.0 1.8 59 15-73 75-145 (212)
38 2edu_A Kinesin-like protein KI 75.4 3.5 0.00012 27.7 4.1 22 27-48 39-60 (98)
39 1cuk_A RUVA protein; DNA repai 74.3 0.49 1.7E-05 36.7 -0.7 36 15-50 60-95 (203)
40 2nrt_A Uvrabc system protein C 73.8 1.4 4.8E-05 34.8 1.9 40 26-67 166-205 (220)
41 3fhf_A Mjogg, N-glycosylase/DN 72.3 2.9 9.9E-05 32.5 3.4 42 26-71 122-164 (214)
42 3n0u_A Probable N-glycosylase/ 72.3 2.2 7.6E-05 33.3 2.7 65 26-104 127-192 (219)
43 2eo2_A Adult MALE hypothalamus 70.1 4.3 0.00015 26.5 3.3 25 45-70 37-61 (71)
44 2ztd_A Holliday junction ATP-d 68.7 2.2 7.6E-05 33.3 2.0 22 28-49 123-144 (212)
45 3q8k_A Flap endonuclease 1; he 68.5 3 0.0001 34.5 2.9 34 7-49 220-253 (341)
46 2gqf_A Hypothetical protein HI 68.3 4.5 0.00015 33.5 3.9 49 22-73 279-327 (401)
47 3v76_A Flavoprotein; structura 67.5 6.1 0.00021 33.0 4.6 49 22-73 298-346 (417)
48 3c65_A Uvrabc system protein C 67.2 1.1 3.9E-05 35.4 0.0 42 24-67 169-210 (226)
49 1vq8_Y 50S ribosomal protein L 66.7 1.2 4E-05 35.5 0.0 27 29-56 16-42 (241)
50 1pu6_A 3-methyladenine DNA gly 65.2 3.3 0.00011 32.0 2.3 41 26-70 119-159 (218)
51 2bgw_A XPF endonuclease; hydro 64.0 2.7 9.4E-05 32.0 1.6 25 26-50 160-184 (219)
52 4e9f_A Methyl-CPG-binding doma 64.0 3.5 0.00012 30.6 2.2 36 9-47 88-123 (161)
53 1qam_A ERMC' methyltransferase 62.5 4.1 0.00014 31.3 2.4 31 43-73 211-241 (244)
54 3vdp_A Recombination protein R 62.0 3.3 0.00011 32.6 1.7 41 25-73 23-63 (212)
55 2abk_A Endonuclease III; DNA-r 61.3 3.9 0.00014 31.2 2.1 23 26-48 107-129 (211)
56 2bcq_A DNA polymerase lambda; 61.0 3.3 0.00011 34.2 1.7 30 22-52 90-119 (335)
57 1kg2_A A/G-specific adenine gl 60.9 4.2 0.00014 31.4 2.2 42 26-71 107-148 (225)
58 1cuk_A RUVA protein; DNA repai 60.8 4.2 0.00014 31.3 2.2 20 29-48 109-128 (203)
59 1ixr_A Holliday junction DNA h 60.6 4.4 0.00015 31.0 2.2 21 29-49 108-128 (191)
60 1mpg_A ALKA, 3-methyladenine D 60.3 12 0.00041 29.7 4.9 29 26-54 205-233 (282)
61 3b0x_A DNA polymerase beta fam 60.0 4.3 0.00015 35.7 2.3 28 24-51 89-116 (575)
62 1kea_A Possible G-T mismatches 59.8 5.8 0.0002 30.5 2.8 41 27-71 114-154 (221)
63 1orn_A Endonuclease III; DNA r 59.4 4.6 0.00016 31.3 2.2 25 26-50 111-136 (226)
64 1x2i_A HEF helicase/nuclease; 59.3 5.5 0.00019 24.7 2.2 21 29-49 47-67 (75)
65 3ory_A Flap endonuclease 1; hy 59.0 5.5 0.00019 33.2 2.7 58 7-75 238-301 (363)
66 2fmp_A DNA polymerase beta; nu 58.2 5 0.00017 33.1 2.3 41 26-67 96-140 (335)
67 1nd9_A Translation initiation 55.8 6.2 0.00021 22.5 1.9 41 30-71 8-48 (49)
68 2ihm_A POL MU, DNA polymerase 55.0 6 0.0002 32.9 2.3 39 27-66 101-143 (360)
69 1vdd_A Recombination protein R 53.9 6.6 0.00023 31.1 2.2 42 24-73 8-49 (228)
70 2yg9_A DNA-3-methyladenine gly 53.8 5.8 0.0002 30.7 1.9 24 25-48 143-166 (225)
71 3s6i_A DNA-3-methyladenine gly 53.7 5.9 0.0002 30.8 1.9 28 26-53 137-164 (228)
72 1jms_A Terminal deoxynucleotid 53.1 6.7 0.00023 33.0 2.3 25 27-52 120-144 (381)
73 2h56_A DNA-3-methyladenine gly 52.9 12 0.0004 29.1 3.6 26 25-50 135-161 (233)
74 3i0w_A 8-oxoguanine-DNA-glycos 51.4 6 0.00021 31.8 1.7 43 25-71 208-251 (290)
75 2jhn_A ALKA, 3-methyladenine D 51.3 7.6 0.00026 31.2 2.3 31 26-58 208-240 (295)
76 4b21_A Probable DNA-3-methylad 50.7 11 0.00036 29.5 3.0 44 25-71 147-191 (232)
77 1z00_A DNA excision repair pro 50.5 8.9 0.00031 25.0 2.2 21 29-49 52-72 (89)
78 1zq9_A Probable dimethyladenos 49.4 19 0.00065 28.2 4.3 33 40-73 247-279 (285)
79 1ul1_X Flap endonuclease-1; pr 49.0 8.9 0.00031 31.9 2.4 34 7-49 220-253 (379)
80 3fsp_A A/G-specific adenine gl 48.2 8.6 0.00029 31.7 2.2 23 26-48 116-138 (369)
81 4ecq_A DNA polymerase ETA; tra 47.9 12 0.00043 31.6 3.2 39 28-66 253-291 (435)
82 4gfj_A Topoisomerase V; helix- 47.6 9.2 0.00031 33.6 2.3 23 27-49 467-489 (685)
83 2w9m_A Polymerase X; SAXS, DNA 46.7 9.4 0.00032 33.6 2.3 27 24-51 93-119 (578)
84 2i5h_A Hypothetical protein AF 46.7 11 0.00036 29.5 2.3 20 28-47 132-151 (205)
85 2zet_C Melanophilin; complex, 43.6 28 0.00095 25.6 4.2 21 53-73 11-31 (153)
86 2xhi_A N-glycosylase/DNA lyase 42.7 17 0.00058 30.2 3.2 42 25-69 250-291 (360)
87 2kp7_A Crossover junction endo 42.1 14 0.00049 24.6 2.2 19 30-48 60-78 (87)
88 1b43_A Protein (FEN-1); nuclea 41.4 14 0.00046 30.2 2.3 35 7-49 224-258 (340)
89 3n5n_X A/G-specific adenine DN 40.9 13 0.00044 30.1 2.1 41 27-71 127-168 (287)
90 2izo_A FEN1, flap structure-sp 40.6 17 0.00059 29.7 2.9 35 7-49 221-255 (346)
91 1im4_A DBH; DNA polymerase PAL 39.6 22 0.00076 27.2 3.2 28 29-60 185-212 (221)
92 1rxw_A Flap structure-specific 39.4 16 0.00053 29.8 2.4 34 7-49 223-256 (336)
93 1a76_A Flap endonuclease-1 pro 38.8 19 0.00066 29.1 2.9 34 7-49 212-245 (326)
94 1exn_A 5'-exonuclease, 5'-nucl 38.3 16 0.00053 29.7 2.2 18 32-49 207-224 (290)
95 2i0z_A NAD(FAD)-utilizing dehy 38.1 28 0.00096 28.7 3.8 49 23-73 320-368 (447)
96 3qe9_Y Exonuclease 1; exonucle 37.3 21 0.00073 29.5 3.0 34 7-49 213-246 (352)
97 1cyi_A Cytochrome C6, cytochro 37.0 11 0.00039 23.5 1.0 17 57-73 65-81 (90)
98 1kx2_A Mono-heme C-type cytoch 36.8 25 0.00084 21.9 2.6 17 57-73 63-79 (81)
99 2bcq_A DNA polymerase lambda; 36.8 12 0.00039 30.9 1.2 41 29-71 58-98 (335)
100 1gks_A Cytochrome C551; haloph 36.5 22 0.00076 21.9 2.3 17 57-73 60-76 (78)
101 1zbd_B Rabphilin-3A; G protein 36.4 21 0.00071 25.7 2.4 22 52-73 3-24 (134)
102 1jx4_A DNA polymerase IV (fami 35.9 29 0.001 28.1 3.6 37 29-66 179-215 (352)
103 1cc5_A Cytochrome C5; electron 35.9 25 0.00086 22.2 2.6 16 58-73 67-82 (83)
104 2d0s_A Cytochrome C, cytochrom 35.3 26 0.0009 21.3 2.6 17 57-73 61-77 (79)
105 2ee7_A Sperm flagellar protein 35.3 15 0.0005 26.4 1.4 34 57-93 10-43 (127)
106 1vqz_A Lipoate-protein ligase, 34.3 37 0.0012 27.8 3.9 48 38-90 211-258 (341)
107 1c75_A Cytochrome C-553; heme, 32.1 33 0.0011 20.5 2.6 20 54-73 50-69 (71)
108 1ci4_A Protein (barrier-TO-aut 30.7 40 0.0014 22.8 2.9 24 28-52 18-41 (89)
109 1i4w_A Mitochondrial replicati 30.5 15 0.00051 30.5 0.9 62 8-73 270-332 (353)
110 3e1s_A Exodeoxyribonuclease V, 30.4 12 0.00041 32.8 0.3 27 28-54 44-70 (574)
111 2exv_A Cytochrome C-551; alpha 30.4 35 0.0012 20.7 2.5 17 57-73 64-80 (82)
112 2ihm_A POL MU, DNA polymerase 30.2 10 0.00035 31.5 -0.1 21 29-49 62-82 (360)
113 3bqs_A Uncharacterized protein 29.7 42 0.0014 22.6 2.9 23 29-52 5-27 (93)
114 1c53_A Cytochrome C553; electr 29.4 28 0.00097 21.3 1.9 17 57-73 62-78 (79)
115 3bq0_A POL IV, DBH, DNA polyme 29.2 29 0.00098 28.2 2.4 37 29-66 180-216 (354)
116 4dez_A POL IV 1, DNA polymeras 29.2 28 0.00094 28.3 2.3 37 29-66 179-215 (356)
117 1ayg_A Cytochrome C-552; elect 29.2 35 0.0012 20.8 2.4 19 55-73 60-78 (80)
118 1yub_A Ermam, rRNA methyltrans 29.1 26 0.00089 26.4 2.0 29 45-73 212-240 (245)
119 2zxy_A Cytochrome C552, cytoch 28.9 35 0.0012 20.7 2.4 17 57-73 69-85 (87)
120 3ph2_B Cytochrome C6; photosyn 28.6 37 0.0013 20.6 2.4 17 57-73 64-80 (86)
121 1jms_A Terminal deoxynucleotid 28.4 12 0.0004 31.4 -0.1 21 29-49 81-101 (381)
122 2h1r_A Dimethyladenosine trans 28.2 53 0.0018 25.8 3.8 32 41-73 260-291 (299)
123 2c8m_A Lipoate-protein ligase 27.2 28 0.00097 27.0 2.0 42 39-84 213-254 (262)
124 2fmp_A DNA polymerase beta; nu 26.7 31 0.0011 28.2 2.2 21 29-49 58-78 (335)
125 1ls9_A Cytochrome C6; omega lo 26.6 42 0.0014 20.8 2.4 17 57-73 68-84 (91)
126 3dmi_A Cytochrome C6; electron 26.6 42 0.0015 20.5 2.4 16 58-73 66-81 (88)
127 1c6r_A Cytochrome C6; electron 26.3 43 0.0015 20.6 2.4 17 57-73 66-82 (89)
128 1a56_A C-551, ferricytochrome 26.3 31 0.001 21.1 1.7 17 57-73 63-79 (81)
129 1dgs_A DNA ligase; AMP complex 26.0 20 0.00069 32.4 1.0 34 32-65 445-478 (667)
130 1cno_A Cytochrome C552; electr 26.0 45 0.0015 20.7 2.5 17 57-73 65-81 (87)
131 3dr0_A Cytochrome C6; photosyn 26.0 40 0.0014 20.7 2.2 17 57-73 70-86 (93)
132 3osn_A DNA polymerase IOTA; ho 25.9 26 0.00088 29.5 1.6 36 30-66 236-271 (420)
133 2bgw_A XPF endonuclease; hydro 25.8 33 0.0011 25.8 2.1 21 29-49 195-215 (219)
134 1gdv_A Cytochrome C6; RED ALGA 25.5 46 0.0016 20.1 2.4 16 58-73 64-79 (85)
135 1f1f_A Cytochrome C6; heme, pr 25.1 47 0.0016 20.3 2.4 17 57-73 67-83 (89)
136 3o0r_C Nitric oxide reductase 24.7 40 0.0014 23.1 2.2 20 54-73 112-131 (146)
137 3cu4_A Cytochrome C family pro 24.4 47 0.0016 20.4 2.3 16 58-73 67-82 (85)
138 3im1_A Protein SNU246, PRE-mRN 24.3 29 0.001 27.9 1.6 44 29-73 158-212 (328)
139 2o3f_A Putative HTH-type trans 23.9 46 0.0016 22.6 2.3 24 29-52 44-67 (111)
140 1cch_A Cytochrome C551; electr 23.4 51 0.0017 19.9 2.3 16 58-73 65-80 (82)
141 3bc1_B Synaptotagmin-like prot 23.4 65 0.0022 20.1 2.7 34 57-116 1-34 (59)
142 2owo_A DNA ligase; protein-DNA 23.3 38 0.0013 30.6 2.3 36 31-66 449-484 (671)
143 3doa_A Fibrinogen binding prot 23.3 29 0.001 27.7 1.4 26 26-51 190-217 (288)
144 1wve_C 4-cresol dehydrogenase 23.1 54 0.0019 20.1 2.4 17 57-73 56-72 (80)
145 1wh7_A ZF-HD homeobox family p 22.8 34 0.0012 22.1 1.4 15 58-72 23-37 (80)
146 2zzs_A Cytochrome C554; C-type 22.4 56 0.0019 20.8 2.5 17 57-73 85-101 (103)
147 3ivp_A Putative transposon-rel 22.2 94 0.0032 20.7 3.7 22 33-54 49-70 (126)
148 3dp5_A OMCF, cytochrome C fami 22.0 55 0.0019 21.1 2.4 16 58-73 81-96 (99)
149 3mfi_A DNA polymerase ETA; DNA 21.9 26 0.0009 30.5 0.9 25 28-52 307-331 (520)
150 3exc_X Uncharacterized protein 21.8 23 0.00077 23.7 0.4 53 9-73 1-56 (91)
151 3fgx_A Rbstp2171; structural g 21.5 34 0.0011 24.2 1.2 46 14-59 68-114 (114)
152 2ce0_A Cytochrome C6; chloropl 21.4 55 0.0019 20.7 2.3 17 57-73 77-93 (105)
153 2zon_G Cytochrome C551; nitrit 20.9 62 0.0021 19.9 2.4 16 58-73 69-84 (87)
154 1jr2_A Uroporphyrinogen-III sy 20.4 1.1E+02 0.0038 23.5 4.3 33 31-65 115-147 (286)
155 1w2l_A Cytochrome oxidase subu 20.2 64 0.0022 20.1 2.4 17 57-73 81-97 (99)
No 1
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.8e-68 Score=407.34 Aligned_cols=152 Identities=88% Similarity=1.364 Sum_probs=150.6
Q ss_pred CCCCCccccchhhhhcCcccCCCeeheeehhcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhCCCCccCC
Q 031813 1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIP 80 (152)
Q Consensus 1 ~~~~~~~~~~~~vri~~~~l~~~k~v~~aL~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L~~~l~~~~~~~ip 80 (152)
|||+..|+||||+||+|||||++|+|.+|||+|||||+.+|..||+++||||++++++||++|+++|.++|++|.+|.||
T Consensus 1 ~~~~~~~~~~~m~RI~g~~i~~~k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~~~~~~~ip 80 (152)
T 3iz6_M 1 MSLIAGEEFQHILRVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHNPRQFKVP 80 (152)
T ss_dssp CCCCTTCSCCCCCCTTTTCCCCSSBHHHHHTTSTTCCHHHHHHHHHHHTCCSSSBTTTSCHHHHHHHHHHHHSCSSCCCC
T ss_pred CCcccHHHHHHHHHHcCCcCCCCcEeHhhhhhccCcCHHHHHHHHHHcCCCCCcEeCcCCHHHHHHHHHHHHhhcccCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred ccccCccCCCCCCchhhhhhhhHHHHHHhhhhhhhccceeecccCCCCCccCCcCCcccCCCccceeeeccC
Q 031813 81 DWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152 (152)
Q Consensus 81 ~w~~nr~~D~~sg~~~~lie~~L~~~~~~~I~rl~~i~syRG~RH~~gLpvRGQRT~tNart~~~~gv~~~k 152 (152)
+||+|||+|+.||++.|++|+||++.+++||+||++|+||||+||.+||||||||||||||||+||||+|||
T Consensus 81 ~w~lNr~kD~~~G~~~~li~~dL~~~~~~dI~RL~~I~~yRG~RH~~GLpVRGQrTkTnaRtg~tvgv~kkk 152 (152)
T 3iz6_M 81 DWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHYWGVRVRGQHTKTTGRRGKTVGVSKKR 152 (152)
T ss_dssp CCSCSCCCSCCCCSCCTTCTHHHHHHHHHHHHHHHHHTCHHHHHHHHTCCSSCCCCSSCCHHHHCSCCSSCC
T ss_pred hhhhhhhcccCCcceeeechhHHHHHHHHhHHHHhhhheeecccccCCCCcCCcCCcCCCCCceecceecCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997
No 2
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=100.00 E-value=1.5e-67 Score=403.37 Aligned_cols=152 Identities=55% Similarity=0.947 Sum_probs=149.3
Q ss_pred CCCCCcc--ccchhhhhcCcccCCCeeheeehhcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhCCCCcc
Q 031813 1 MSLVANE--DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFK 78 (152)
Q Consensus 1 ~~~~~~~--~~~~~vri~~~~l~~~k~v~~aL~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L~~~l~~~~~~~ 78 (152)
|||+..| +||||+||+|||||++|.|.+||++|||||+.+|..||+++||||++++++||++|+++|.++|++|.+|.
T Consensus 1 m~~~~~~~~~f~~m~RI~g~~l~~~k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i~~p~~~~ 80 (155)
T 2xzm_M 1 MSFVIEKESDFKYIHRILNTNIDGKRITPIALTGIRGIGRRFAYIICKVLKIDPNARAGLLTEDQCNKITDLIADPEAHG 80 (155)
T ss_dssp CCCCSSTTTSSCSCCEETTTEECCSSCHHHHHTTSTTCCHHHHHHHHHHTTCCSSSCSSCSCHHHHHHHHHHHHSHHHHC
T ss_pred CCccccchHhhhhhHheeCccCCCCCEEEEeeecccccCHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHhCccccC
Confidence 8888666 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCccCCCCCCchhhhhhhhHHHHHHhhhhhhhccceeecccCCCCCccCCcCCcccCCCccceeeeccC
Q 031813 79 IPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152 (152)
Q Consensus 79 ip~w~~nr~~D~~sg~~~~lie~~L~~~~~~~I~rl~~i~syRG~RH~~gLpvRGQRT~tNart~~~~gv~~~k 152 (152)
||+||+|||+|+.||++.|++|+||++.+++||+||++|+||||+||.+||||||||||||||||++|||+|||
T Consensus 81 iP~w~lNr~kD~~~G~~~~~ie~dLr~~~~~dI~Rl~~I~~yRG~RH~~GLpVRGQRTkTnaRtg~tvGv~kkk 154 (155)
T 2xzm_M 81 IPTWLLNRINDFKDGKNYQMASNTLDTKMREDLERLKKIKSHRGLRHFWGLKVRGQHTKTSGRHGVVCGVVRKN 154 (155)
T ss_dssp CCGGGCSEEEETTTEEEECCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHTCCSSSCCCSSSSCSSCCCSSCCCC
T ss_pred CCHHHhhcccccCCCceeEEecHHHHHHHHHhHHHHhhhceeeeeecccCCCcCCcCCccCCCCcccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997
No 3
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.5e-66 Score=395.25 Aligned_cols=146 Identities=43% Similarity=0.795 Sum_probs=144.0
Q ss_pred cccchhhhhcCcccCCCeeheeehhcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhCCCCccCCccccCc
Q 031813 7 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNR 86 (152)
Q Consensus 7 ~~~~~~vri~~~~l~~~k~v~~aL~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L~~~l~~~~~~~ip~w~~nr 86 (152)
++||||+||+|||||++|.|.+|||+|||||..+|..||+++||||++++++||++|+++|.++|++|.+|+||+||+||
T Consensus 2 ~~~~~m~RI~g~~i~~~k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~i~~~i~~~~~~~iP~w~lNr 81 (148)
T 3j20_O 2 ANFRHIVRVAGVDLDGNKQLRWALTAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILADPVAHGIPRWAVNR 81 (148)
T ss_dssp CCBCSCEECSSSCEECSSCHHHHHHHSTTCCHHHHHHHHHHHTCCSSSCTTBCCHHHHHHHHHHHHCHHHHCCCTTTSSE
T ss_pred hhhhHhHHHcCccCCCCCEehhhhhhccCcCHHHHHHHHHHhCCCCCceeccCCHHHHHHHHHHHhcccccCCChhhhcc
Confidence 67999999999999999999999999999999999999999999999999999999999999999998788999999999
Q ss_pred cCCCCCCchhhhhhhhHHHHHHhhhhhhhccceeecccCCCCCccCCcCCcccCCCccceeeeccC
Q 031813 87 QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152 (152)
Q Consensus 87 ~~D~~sg~~~~lie~~L~~~~~~~I~rl~~i~syRG~RH~~gLpvRGQRT~tNart~~~~gv~~~k 152 (152)
|+|+.||++.|++|+||++.+++||+||++|+||||+||.+||||||||||||||||+||||+|||
T Consensus 82 ~kD~~~G~~~~~ve~dL~~~~~~dI~RL~~I~~yRG~RH~~GLpVRGQrTkTnaR~g~tvgv~kkk 147 (148)
T 3j20_O 82 PKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRGQRTRSNFRRGQTVGVSRKK 147 (148)
T ss_dssp EEETTTEEEECCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHTCCSSSCCCSSCSCSSCCCCCSSCC
T ss_pred cCCCCCCceeEEechHHHHHHHHHHHHHHHhCcEEeecccCCCcCCCCCCcCCCCcCcccceeccC
Confidence 999999999999999999999999999999999999999999999999999999999999999997
No 4
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=100.00 E-value=8e-64 Score=379.51 Aligned_cols=144 Identities=67% Similarity=1.124 Sum_probs=140.3
Q ss_pred CCCCCcc--ccchhhhhcCcccCCCeeheeehhcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhCCCCcc
Q 031813 1 MSLVANE--DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFK 78 (152)
Q Consensus 1 ~~~~~~~--~~~~~vri~~~~l~~~k~v~~aL~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L~~~l~~~~~~~ 78 (152)
|||+..| +||||+||+|||||++|.|.+|||+|||||..+|..||+++||||++++++||++|+++|.++|++|.+|+
T Consensus 1 ~~~~~~~~~~~~~~~RI~g~~i~~~k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~~~~~~~ 80 (146)
T 3u5c_S 1 MSLVVQEQGSFQHILRLLNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQNPTHYK 80 (146)
T ss_dssp -CCCCCCCSCCCSSBCCTTSCBCSSSCTTTTGGGSTTCCHHHHHHHHHHHTCCTTSCSSSCCHHHHHHHHHHHTCTTTTT
T ss_pred CCccCCCHHHhhhhhhhcCccCCCCcchHhhHhhhcCCCHHHHHHHHHHcCCCCCceeccCCHHHHHHHHHHHHhhcccC
Confidence 8999766 89999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred CCccccCccCCCCCCchhhhhhhhHHHHHHhhhhhhhccceeecccCCCCCccCCcCCcccCCCcc
Q 031813 79 IPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGK 144 (152)
Q Consensus 79 ip~w~~nr~~D~~sg~~~~lie~~L~~~~~~~I~rl~~i~syRG~RH~~gLpvRGQRT~tNart~~ 144 (152)
||+||+|||+|+.||++.|++|+||++.+++||+||++|+||||+||.+||||||||||||||+|+
T Consensus 81 iP~w~lNR~kD~~~G~~~~lie~dL~~~~~~dI~RL~~I~~yRG~RH~~GLpVRGQrTkTnaR~g~ 146 (146)
T 3u5c_S 81 IPAWFLNRQNDITDGKDYHTLANNVESKLRDDLERLKKIRAHRGIRHFWGLRVRGQHTKTTGRRRA 146 (146)
T ss_dssp CCSTTCTBCSCSSSCCCBCCCTHHHHHHHHHHHHHHHHHTCHHHHHHHTTCCCSCCCCSSSCCSCC
T ss_pred ccHHHhhhhhcccccchheeehHHHHHHHHHhhHHHHhhceeeeecccCCCCCCccCCCcCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999985
No 5
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=100.00 E-value=1.4e-48 Score=289.63 Aligned_cols=111 Identities=32% Similarity=0.483 Sum_probs=106.2
Q ss_pred hhhhcCcccCCCeeheeehhcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhCCCCccCCccccCccCCCC
Q 031813 12 ILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYK 91 (152)
Q Consensus 12 ~vri~~~~l~~~k~v~~aL~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L~~~l~~~~~~~ip~w~~nr~~D~~ 91 (152)
|+||+|||||++|.|.+||++|||||..+|..||+++||||++++++||++|+++|.++|++ +|
T Consensus 1 m~rI~g~~i~~~k~v~~aLt~I~GIG~~~A~~I~~~~gi~~~~r~~~Lt~~ei~~l~~~i~~--~~-------------- 64 (126)
T 2vqe_M 1 MARIAGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVEN--TW-------------- 64 (126)
T ss_dssp -CCCSTTCCCCSSBHHHHHTTSSSCCSHHHHHHTTTTTCCTTSBGGGCCHHHHHHHHHHHHT--TS--------------
T ss_pred CceEeCccCCCCcEeeeehhccccccHHHHHHHHHHcCCCcccccCcCCHHHHHHHHHHHHH--hC--------------
Confidence 89999999999999999999999999999999999999999999999999999999999986 24
Q ss_pred CCchhhhhhhhHHHHHHhhhhhhhccceeecccCCCCCccCCcCCcccCCCcc
Q 031813 92 DGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGK 144 (152)
Q Consensus 92 sg~~~~lie~~L~~~~~~~I~rl~~i~syRG~RH~~gLpvRGQRT~tNart~~ 144 (152)
++|+||++++++||+||++|+||||+||.+|||||||||||||||++
T Consensus 65 ------~ve~dLrr~~~~nIkRL~~I~~YRG~RH~~GLPVRGQRTkTNaRTrk 111 (126)
T 2vqe_M 65 ------KLEGELRAEVAANIKRLMDIGCYRGLRHRRGLPVRGQRTRTNARTRK 111 (126)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSSSCCCSSCCHHHH
T ss_pred ------cchhHHHHHHHHHHHHHHHHHHHhhhhhccCCcCCCccCccccccCC
Confidence 35999999999999999999999999999999999999999999976
No 6
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=100.00 E-value=2.2e-47 Score=279.00 Aligned_cols=109 Identities=34% Similarity=0.507 Sum_probs=105.2
Q ss_pred hhhcCcccCCCeeheeehhcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhCCCCccCCccccCccCCCCC
Q 031813 13 LRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKD 92 (152)
Q Consensus 13 vri~~~~l~~~k~v~~aL~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L~~~l~~~~~~~ip~w~~nr~~D~~s 92 (152)
.||+|||||++|.|.+||++|||||..+|..||+++||||++++++||++|+++|.++|++ |.+
T Consensus 1 ~RI~g~~i~~~k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i~~---~~i------------- 64 (114)
T 3r8n_M 1 ARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAK---FVV------------- 64 (114)
T ss_dssp CCTTSSCCCCSSCHHHHGGGSTTCCHHHHHHHHHHTTCCTTCCSTTCCHHHHHHHHHHHSS---SCT-------------
T ss_pred CeeCCccCCCCCEeHhhHhhhcCcCHHHHHHHHHHcCcCcccCcccCCHHHHHHHHHHHHH---hcc-------------
Confidence 4899999999999999999999999999999999999999999999999999999999965 654
Q ss_pred CchhhhhhhhHHHHHHhhhhhhhccceeecccCCCCCccCCcCCcccCCCcc
Q 031813 93 GKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGK 144 (152)
Q Consensus 93 g~~~~lie~~L~~~~~~~I~rl~~i~syRG~RH~~gLpvRGQRT~tNart~~ 144 (152)
|+||++++++||+||++|+||||+||.+|||||||||||||||+|
T Consensus 65 -------e~dLr~~~~~dI~RL~~I~~yRG~RH~~GLpVRGQrTkTnaRTrk 109 (114)
T 3r8n_M 65 -------EGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRK 109 (114)
T ss_dssp -------THHHHHHHHHHHHHHHHHTCHHHHHHHTTSCCSSCCSSSCCHHHH
T ss_pred -------hHHHHHHHHHHHHHHHHhceeeeecccCCCCCCCCCCCCcccccC
Confidence 799999999999999999999999999999999999999999987
No 7
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=2.4e-44 Score=271.47 Aligned_cols=109 Identities=31% Similarity=0.397 Sum_probs=92.3
Q ss_pred CCCCccccc------hhhhhcCcccCCCeeheeehhcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhCCC
Q 031813 2 SLVANEDFQ------HILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPR 75 (152)
Q Consensus 2 ~~~~~~~~~------~~vri~~~~l~~~k~v~~aL~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L~~~l~~~~ 75 (152)
|....++|| ||+||+|||||++|.|.+||++|||||..+|.+||+++|| +++++++|||+|+++|.++
T Consensus 30 ~~~~~~~~~~~~~~~~m~RI~gvdlp~~K~v~~aLt~IyGIG~~~A~~I~~~~gI-~~~rv~~Lte~ei~~l~~~----- 103 (145)
T 3bbn_M 30 PAPKKGGIGHGGLQIECIRIGGVEIPNHKRVEYSLQYIHGIGRSRSRQILLDLNF-DNKVTKDLSEEEVIILRKE----- 103 (145)
T ss_dssp -----------------CCCSSSCCCCSSBTTTGGGGSTTCCSSTTTGGGTTTTC-CSCBTTSCCSSTTHHHHSS-----
T ss_pred ccCCchhhhcccchhheeeEeCcccCCCCEEEEeeeeecCccHHHHHHHHHHcCC-CceEcCCCCHHHHHHHHHH-----
Confidence 334557899 8999999999999999999999999999999999999999 7999999999999998875
Q ss_pred CccCCccccCccCCCCCCchhhhhhhhHHHHHHhhhhhhhccceeecccCCCCCccCCcCCcccCCCcc
Q 031813 76 QFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGK 144 (152)
Q Consensus 76 ~~~ip~w~~nr~~D~~sg~~~~lie~~L~~~~~~~I~rl~~i~syRG~RH~~gLpvRGQRT~tNart~~ 144 (152)
++++++||+||++|+||||+||.+|||||||||||||||.|
T Consensus 104 ----------------------------Rr~v~~nIkRL~~I~~YRGlRH~~GLPVRGQRTkTNaRTrK 144 (145)
T 3bbn_M 104 ----------------------------KRFNRVAIERLKEIRCYRGIRHKLGLPVRGQRTKNNCRTLK 144 (145)
T ss_dssp ----------------------------CCCCSTTTHHHHCCCCSCCTTTTTTCCSSSCCTTTCCCSSC
T ss_pred ----------------------------HHHHHHHHHHHhhhceEeeeecccCCcCCCccCccccccCC
Confidence 11246899999999999999999999999999999999976
No 8
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=98.74 E-value=8.1e-09 Score=90.29 Aligned_cols=107 Identities=20% Similarity=0.267 Sum_probs=86.1
Q ss_pred ccchhhhhcCcccCCCeeheeehhcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhCCCCccCCccccCcc
Q 031813 8 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQ 87 (152)
Q Consensus 8 ~~~~~vri~~~~l~~~k~v~~aL~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L~~~l~~~~~~~ip~w~~nr~ 87 (152)
++-.+++++...=..-....|...+|.+||..+|.+||+.+|++|++++.+|+++|+..|.+++.+ ++ . +++|+
T Consensus 238 ~l~~~~~~~~~~~~~~~~~~fl~~~f~~v~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~--~-~~~p~ 311 (471)
T 1mu5_A 238 DREEIKILINNLKRDYTIKEFLVNEFQSIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETFKK---YE--D-FRSPS 311 (471)
T ss_dssp CHHHHHHHSTTCSSCCBHHHHHTTSSSSCCHHHHHHHHHHTTCCTTSBGGGCCTTHHHHHHHHHHH---CC--C-CCCCC
T ss_pred hHHHHHHHHHhcCCCcchHHhhhccccccCHHHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHHHh---cc--C-ccCCC
Confidence 344455555332222245567778899999999999999999999999999999999999999987 42 1 25679
Q ss_pred CCCCCCchhhhhhhhHHHHHHhh----hhhhhccceeec
Q 031813 88 KDYKDGKYSQVVSNALDMKLRDD----LERLKKIRNHRG 122 (152)
Q Consensus 88 ~D~~sg~~~~lie~~L~~~~~~~----I~rl~~i~syRG 122 (152)
.||+||.+.++++.+|++.++.+ ++| ..+.|+|
T Consensus 312 ~~~lspig~~~~~~g~~~~~~~~f~~~~~r--~~~~~~g 348 (471)
T 1mu5_A 312 ADSLSVIGEDLIELGLKKIFNPDFAASITR--KPKAYQG 348 (471)
T ss_dssp STTCCCCCHHHHHHHHHHHHCCSEEEEEEC--CCEEETT
T ss_pred ccccCcCCHHHHHhhhhhccCceEEEEEec--CCceecC
Confidence 99999999999999999998886 566 7788887
No 9
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=98.25 E-value=7.8e-07 Score=78.84 Aligned_cols=90 Identities=18% Similarity=0.223 Sum_probs=78.9
Q ss_pred eeheeehhcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhCCCCcc-CCccccCccCCCCCCchhhhhhhh
Q 031813 24 QKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFK-IPDWFLNRQKDYKDGKYSQVVSNA 102 (152)
Q Consensus 24 k~v~~aL~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L~~~l~~~~~~~-ip~w~~nr~~D~~sg~~~~lie~~ 102 (152)
....|+-..+.++|..+|..||..+|++++.++.+|+.+|+..+.+++.+ ++ + ++++.||+||.+.++++.+
T Consensus 253 ~l~~fl~~~ft~~g~~~a~~~~~~~gl~~~~~~~~l~~~~~~~ll~a~~~---~k~~----~~P~~~~lspig~~~~~~g 325 (530)
T 2zbk_B 253 TIKEFLVNEFQSIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETFKK---DEDF----RSPSADSLSVIGEDLIELG 325 (530)
T ss_dssp BHHHHHHTTSTTCCHHHHHHHHHHTTCCSSCBSSCCCHHHHHHHHHHHHH---CCCC----CCCCSTTCCCCCTTHHHHH
T ss_pred eeHhhhcCccccccHHHHHHHHHhhCCCCCCCcccCCHHHHHHHHHHHHh---ccCC----CCCCccccCcCCHHHHHhh
Confidence 34467778899999999999999999999999999999999999999986 54 3 5679999999999999999
Q ss_pred HHHHHHhh----hhhhhccceeec
Q 031813 103 LDMKLRDD----LERLKKIRNHRG 122 (152)
Q Consensus 103 L~~~~~~~----I~rl~~i~syRG 122 (152)
|+..++.+ ++| ..+.|+|
T Consensus 326 ~~~~~~~~f~~~~~r--~~~~~~g 347 (530)
T 2zbk_B 326 LKKIFNPDFAASITR--KPKAYQG 347 (530)
T ss_dssp TTTTTCCSEEEEEEC--CCEEETT
T ss_pred HHhhcCceEEEEEcc--CCceecC
Confidence 99888876 566 7788887
No 10
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=96.25 E-value=0.0047 Score=50.06 Aligned_cols=52 Identities=17% Similarity=0.179 Sum_probs=45.0
Q ss_pred CCeeheeeh---hcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhC
Q 031813 22 GKQKIMFAL---TSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 73 (152)
Q Consensus 22 ~~k~v~~aL---~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L~~~l~~ 73 (152)
.+.+|.-+| +-|-|||...|.++|-.+||+|..++++||++|++.|-+.+..
T Consensus 142 ~~~~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~~~~Ls~~~~~~L~~~i~~ 196 (266)
T 1ee8_A 142 SARPLKALLLDQRLAAGVGNIYADEALFRARLSPFRPARSLTEEEARRLYRALRE 196 (266)
T ss_dssp CCSBHHHHHHHSSSSTTCCHHHHHHHHHHTTCCSSSBGGGCCHHHHHHHHHHHHH
T ss_pred CCccHHHHHhccCccccccHhHHHHHHHHcCCCCCCCcccCCHHHHHHHHHHHHH
Confidence 356776666 3489999999999999999999999999999999998887754
No 11
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=96.24 E-value=0.0047 Score=49.90 Aligned_cols=50 Identities=24% Similarity=0.308 Sum_probs=43.8
Q ss_pred eeheeeh---hcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhC
Q 031813 24 QKIMFAL---TSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 73 (152)
Q Consensus 24 k~v~~aL---~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L~~~l~~ 73 (152)
.+|..+| +-|-|||...|.++|-.+||+|..++++||++|++.|-+.+..
T Consensus 151 ~~Ik~~LLDQ~vvaGiGNiYadEiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~~ 203 (262)
T 1k3x_A 151 RQFAGLLLDQAFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLE 203 (262)
T ss_dssp SCHHHHTTCTTTSBTCCHHHHHHHHHHHTCCSSCCGGGSCHHHHHHHHHHHHH
T ss_pred ccHHHHHhcCCeeecccHHHHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHHH
Confidence 5666565 3379999999999999999999999999999999999888764
No 12
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=96.21 E-value=0.0048 Score=50.20 Aligned_cols=52 Identities=21% Similarity=0.257 Sum_probs=45.6
Q ss_pred CCeeheeeh---hcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhC
Q 031813 22 GKQKIMFAL---TSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 73 (152)
Q Consensus 22 ~~k~v~~aL---~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L~~~l~~ 73 (152)
.+.+|.-+| +-|-|||...|.+||-.+||+|..++++||++|++.|-+.+..
T Consensus 154 ~~~~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~~~~Ls~~~~~~L~~~i~~ 208 (273)
T 3u6p_A 154 TKRSVKALLLDCTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVA 208 (273)
T ss_dssp CCSBHHHHHHCTTTSTTCCHHHHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred CcchHHHHHhcCCccccccHHHHHHHHHHcCCCccCccccCCHHHHHHHHHHHHH
Confidence 466676666 4499999999999999999999999999999999999888764
No 13
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=96.21 E-value=0.0049 Score=50.01 Aligned_cols=52 Identities=21% Similarity=0.230 Sum_probs=45.1
Q ss_pred CCeeheeeh---hcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhC
Q 031813 22 GKQKIMFAL---TSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 73 (152)
Q Consensus 22 ~~k~v~~aL---~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L~~~l~~ 73 (152)
.+.+|.-+| +-|-|||...|.++|-.+||+|..++++||++|++.|-+.+..
T Consensus 152 ~~~~IK~~LLDQ~vvaGiGNiYadEiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~~ 206 (271)
T 2xzf_A 152 STKKIKPYLLEQTLVAGLGNIYVDEVLWLAKIHPEKETNQLIESSIHLLHDSIIE 206 (271)
T ss_dssp CCSBHHHHHHTSSSSSCCCHHHHHHHHHHTTCCTTCBGGGCCHHHHHHHHHHHHH
T ss_pred CCccHHHHHhcCCeecccChhHHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHHH
Confidence 356676666 3489999999999999999999999999999999998887754
No 14
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=96.21 E-value=0.0048 Score=50.04 Aligned_cols=52 Identities=27% Similarity=0.223 Sum_probs=45.2
Q ss_pred CCeeheeeh---hcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhC
Q 031813 22 GKQKIMFAL---TSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 73 (152)
Q Consensus 22 ~~k~v~~aL---~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L~~~l~~ 73 (152)
.+.+|.-+| +-|-|||...|.++|-.+||+|..++++||++|++.|-+.+..
T Consensus 149 ~~~~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~~ 203 (268)
T 1k82_A 149 KKTAIKPWLMDNKLVVGVGNIYASESLFAAGIHPDRLASSLSLAECELLARVIKA 203 (268)
T ss_dssp CCSBHHHHHTCTTTCSSCCHHHHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHhcCCeeeccCchHHHHHHHHcCCCCCCCcccCCHHHHHHHHHHHHH
Confidence 356776666 4489999999999999999999999999999999999887754
No 15
>3twl_A Formamidopyrimidine-DNA glycosylase 1; helix two turns helix, zinc-LESS finger, hydrolase, DNA DAMA repair, DNA-binding, glycosidase, lyase; 1.70A {Arabidopsis thaliana} PDB: 3twm_A* 3twk_A
Probab=96.08 E-value=0.0063 Score=50.42 Aligned_cols=52 Identities=27% Similarity=0.277 Sum_probs=45.1
Q ss_pred CCeeheeehh---cccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhC
Q 031813 22 GKQKIMFALT---SIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 73 (152)
Q Consensus 22 ~~k~v~~aL~---~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L~~~l~~ 73 (152)
.+.+|.-+|- -|-|||...|.+||-++||+|..++++||++|++.|-+.+..
T Consensus 167 ~~~~IK~~LLDQ~vvaGIGNiYadEiLf~AgIhP~~~a~~Ls~~e~~~L~~~i~~ 221 (310)
T 3twl_A 167 KKITIKPLLLDQGYISGIGNWIADEVLYQARIHPLQTASSLSKEQCEALHTSIKE 221 (310)
T ss_dssp CCSBHHHHHHCTTTSBSCCHHHHHHHHHHTTCCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred CcchHHHHHhcCccccCCcHHHHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHHH
Confidence 4667766663 389999999999999999999999999999999999887754
No 16
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=96.02 E-value=0.0065 Score=50.04 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=45.2
Q ss_pred Ceeheeeh---hcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhC
Q 031813 23 KQKIMFAL---TSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 73 (152)
Q Consensus 23 ~k~v~~aL---~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L~~~l~~ 73 (152)
+.+|..+| +-|-|||...|.++|-.+||+|..++++||++|++.|.+.+.+
T Consensus 174 ~~~IK~~LLDQ~viaGiGNIYa~EiLf~AgI~P~~~~~~Ls~~~~~~L~~ai~~ 227 (287)
T 3w0f_A 174 DRMLCDVLLDQRVLPGVGNIIKNEALFDSGLHPAVKVCQLSDKQACHLVKMTRD 227 (287)
T ss_dssp SSBHHHHHHCTTTSTTCCHHHHHHHHHHHTCCTTCBGGGSCHHHHHHHHHHHHH
T ss_pred cccHHHHHhcCCccccccHHHHHHHHHHccCCccCccccCCHHHHHHHHHHHHH
Confidence 44666555 4489999999999999999999999999999999999999875
No 17
>3vk8_A Probable formamidopyrimidine-DNA glycosylase; DNA glycosylase, hneil1 ortholog, DNA lesion, thymine glycol zincless finger; HET: DNA CTG; 2.00A {Acanthamoeba polyphaga mimivirus} PDB: 3vk7_A* 3a42_A 3a46_A* 3a45_A*
Probab=96.01 E-value=0.0064 Score=50.02 Aligned_cols=52 Identities=27% Similarity=0.333 Sum_probs=44.9
Q ss_pred CCeeheeeh---hc-ccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhC
Q 031813 22 GKQKIMFAL---TS-IKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 73 (152)
Q Consensus 22 ~~k~v~~aL---~~-i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L~~~l~~ 73 (152)
.+.+|.-+| +- |-|||...|.+||-.+||+|..++++||++|++.|-+.+..
T Consensus 153 ~~~~Ik~~LLDQ~~~vaGIGNiYa~EiLf~A~I~P~~~~~~Ls~~~~~~L~~~i~~ 208 (295)
T 3vk8_A 153 YKQPIVALLMDQKKIGSGLGNYLVAEILYRAKIDPHKLGSNLTDQEIENLWYWIKY 208 (295)
T ss_dssp CCSBHHHHHHCSSSSCBCCCHHHHHHHHHHTTBCTTCBGGGCCHHHHHHHHHHHHH
T ss_pred cCchHHHHHhcCCcccccccHHHHHHHHHHcCCCccCccccCCHHHHHHHHHHHHH
Confidence 455666555 33 89999999999999999999999999999999999888754
No 18
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=92.94 E-value=0.046 Score=34.78 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=31.6
Q ss_pred ehhcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHH
Q 031813 29 ALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNL 67 (152)
Q Consensus 29 aL~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L 67 (152)
.|.+|+|||+..+..+++.+| .-..+.+.|.+|+..+
T Consensus 5 ~L~~IpGIG~kr~~~LL~~Fg--s~~~i~~As~eeL~~v 41 (63)
T 2a1j_A 5 FLLKMPGVNAKNCRSLMHHVK--NIAELAALSQDELTSI 41 (63)
T ss_dssp HHHTSTTCCHHHHHHHHHHCS--SHHHHHTCCHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHHcC--CHHHHHHCCHHHHHHH
Confidence 578999999999999999988 4566778888888776
No 19
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=92.37 E-value=0.12 Score=41.54 Aligned_cols=63 Identities=13% Similarity=0.136 Sum_probs=50.0
Q ss_pred ccchhhhhcCcccCCCeeheeehhcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhC
Q 031813 8 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 73 (152)
Q Consensus 8 ~~~~~vri~~~~l~~~k~v~~aL~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L~~~l~~ 73 (152)
.|.++|+.+ .--..|.+..+|..+ |.+...+..+++.+||++++++.+||.+|+..|.+++++
T Consensus 207 ~~~~~v~~~--F~~rrKtL~n~L~~~-~~~~~~~~~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~~~ 269 (271)
T 3fut_A 207 GLFRLVEAA--FGKRRKTLLNALAAA-GYPKARVEEALRALGLPPRVRAEELDLEAFRRLREGLEG 269 (271)
T ss_dssp HHHHHHHHH--TSSTTSCHHHHHHHT-TCCHHHHHHHHHHTTCCTTCCGGGCCHHHHHHHHHHHC-
T ss_pred HHHHHHHHH--HhcCCcHHHHHHHhh-cCCHHHHHHHHHHCCcCCCCChhhCCHHHHHHHHHHHHh
Confidence 466666642 233578888888775 457788889999999999999999999999999998864
No 20
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=92.20 E-value=0.05 Score=35.56 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=21.9
Q ss_pred CcccCCCeeheeehhcccccCHHHHHHHHHHcC
Q 031813 17 NTNVDGKQKIMFALTSIKGIGRRLANIVCKKAD 49 (152)
Q Consensus 17 ~~~l~~~k~v~~aL~~i~GIG~~~A~~Ic~~lg 49 (152)
|.-++.+......|..|+|||+.+|..|++.+|
T Consensus 13 ~~~~~~~~~~~~~L~~I~gIG~~~A~~Ll~~fg 45 (78)
T 1kft_A 13 GLVPRGSHMNTSSLETIEGVGPKRRQMLLKYMG 45 (78)
T ss_dssp ----------CCGGGGCTTCSSSHHHHHHHHHS
T ss_pred hHHHhHHHHHHHHHhcCCCCCHHHHHHHHHHcC
Confidence 445666777888999999999999999999986
No 21
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=91.99 E-value=0.032 Score=50.30 Aligned_cols=87 Identities=23% Similarity=0.235 Sum_probs=67.5
Q ss_pred eeehhcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhCCCCccCCccccCccCCCCCCchhhhhhhhHHHH
Q 031813 27 MFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMK 106 (152)
Q Consensus 27 ~~aL~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L~~~l~~~~~~~ip~w~~nr~~D~~sg~~~~lie~~L~~~ 106 (152)
.|+-......|..+++.+|+..++.+.....+|+.+++.....++-+ ..+ .+|+.|+++|.+..+++..|...
T Consensus 260 sFvN~i~T~~GGr~in~~~~~~~l~k~~~~~~lt~dDiregL~avis---vki----~~Pqtk~l~pige~~i~~~l~~~ 332 (621)
T 2q2e_B 260 PFLRYSFCKIGLLTAEEICKAAGLDPEIDPHALGRHEARKLIEAFEK---VKI----MAPPTDCLSPIGEDLIYRGLEKE 332 (621)
T ss_dssp CTTSSSSCC--CHHHHHHHHTTTCCTTSCSSSCCSSSSTTTTHHHHT---SCC----SCCCSTTCCCCCHHHHHHHHHHH
T ss_pred EEeCCcccCCCHHHHHHHHHHhCccccccCCCCCHHHHHhhcEEEEE---EEC----CCCCccccChhHHHHHHHHHHHh
Confidence 34334455667799999999999987656678999999888888765 444 57899999999999999999998
Q ss_pred HHhhh----hhhhccceeec
Q 031813 107 LRDDL----ERLKKIRNHRG 122 (152)
Q Consensus 107 ~~~~I----~rl~~i~syRG 122 (152)
++.+. +| .++.|+|
T Consensus 333 ~~p~f~~~~~r--~p~~~~g 350 (621)
T 2q2e_B 333 TTVDFIATSTR--KPAVYSG 350 (621)
T ss_dssp SCCSEEECCBC--CCEEETT
T ss_pred cChheEEEEec--CccccCC
Confidence 88753 45 7788887
No 22
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=90.51 E-value=0.11 Score=32.92 Aligned_cols=51 Identities=10% Similarity=0.169 Sum_probs=35.6
Q ss_pred eeheeehhcccccCHHHHHHHHHHcCC-------CC--CCCCCCCCHHHHHHHHHHHhCC
Q 031813 24 QKIMFALTSIKGIGRRLANIVCKKADV-------DM--NKRAGELSAAELDNLMVVVANP 74 (152)
Q Consensus 24 k~v~~aL~~i~GIG~~~A~~Ic~~lgi-------~~--~~~~~~Ls~~ei~~L~~~l~~~ 74 (152)
..+..+|+.|+|||..+|..|++.+|= ++ -..+..+.+.....|..+++++
T Consensus 10 ~~~~~~L~~i~giG~~~a~~Ll~~fgs~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~~~ 69 (75)
T 1x2i_A 10 ERQRLIVEGLPHVSATLARRLLKHFGSVERVFTASVAELMKVEGIGEKIAKEIRRVITAP 69 (75)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHHHCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCHHHHHhCCHHHHhcCCCCCHHHHHHHHHHHhCc
Confidence 345678999999999999999998762 11 1234445666667777777663
No 23
>1tdh_A NEI endonuclease VIII-like 1; helix two turns helix, zinc-LESS finger, hydrolase; 2.10A {Homo sapiens} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=89.77 E-value=0.035 Score=47.03 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=34.7
Q ss_pred Ceeheeeh---hcccccCHHHHHHHHHHcCCCCCCCCCCCCHH
Q 031813 23 KQKIMFAL---TSIKGIGRRLANIVCKKADVDMNKRAGELSAA 62 (152)
Q Consensus 23 ~k~v~~aL---~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ 62 (152)
+.+|..+| +-|-|||...|.+||-.+||+|...+++|+++
T Consensus 158 ~~~IK~~LLDQ~vVAGIGNIYadEiLF~AgIhP~r~a~~Ls~~ 200 (364)
T 1tdh_A 158 DRPICEALLDQRFFNGIGNYLRAEILYRLKIPPFEKARSVLEA 200 (364)
T ss_dssp GSBHHHHTTCTTTSTTCCHHHHHHHHHHHTCCTTSBHHHHHGG
T ss_pred cccHHHHHhcCCeeeccchHHHHHHHHHCcCCCCCChhhcCHH
Confidence 56666555 34899999999999999999999999999886
No 24
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=89.69 E-value=0.22 Score=33.14 Aligned_cols=50 Identities=14% Similarity=0.217 Sum_probs=35.2
Q ss_pred eheeehhcccccCHHHHHHHHHHcCC-------CCC--CCCCCCCHHHHHHHHHHHhCC
Q 031813 25 KIMFALTSIKGIGRRLANIVCKKADV-------DMN--KRAGELSAAELDNLMVVVANP 74 (152)
Q Consensus 25 ~v~~aL~~i~GIG~~~A~~Ic~~lgi-------~~~--~~~~~Ls~~ei~~L~~~l~~~ 74 (152)
.+..+|..|+|||..+|..|++.+|= ++. ..+..+.+....+|.++++++
T Consensus 16 ~~~~~L~~IpgIG~~~A~~Ll~~fgsl~~l~~a~~~eL~~i~GIG~~~a~~I~~~l~~~ 74 (89)
T 1z00_A 16 RVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEP 74 (89)
T ss_dssp HHHHHHTTSSSCCHHHHHHHHHHTCBHHHHHHCCHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHCCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 45678999999999999999998761 110 133345566667777777764
No 25
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=89.23 E-value=0.12 Score=34.87 Aligned_cols=43 Identities=14% Similarity=0.126 Sum_probs=33.4
Q ss_pred CeeheeehhcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHH
Q 031813 23 KQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNL 67 (152)
Q Consensus 23 ~k~v~~aL~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L 67 (152)
|......|..|+|||...+..|++.+| .-..+.+.|.+||..+
T Consensus 13 N~~~~s~L~~IpGIG~kr~~~LL~~Fg--Sl~~i~~AS~eEL~~v 55 (84)
T 1z00_B 13 NPGPQDFLLKMPGVNAKNCRSLMHHVK--NIAELAALSQDELTSI 55 (84)
T ss_dssp CHHHHHHHHTCSSCCHHHHHHHHHHSS--CHHHHHHSCHHHHHHH
T ss_pred cccHHHHHHhCCCCCHHHHHHHHHHcC--CHHHHHHCCHHHHHHH
Confidence 344566789999999999999999988 3455666777777765
No 26
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=88.60 E-value=0.34 Score=38.29 Aligned_cols=57 Identities=18% Similarity=0.109 Sum_probs=44.1
Q ss_pred ccchhhhhcCcccCCCeeheeehhcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHh
Q 031813 8 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVA 72 (152)
Q Consensus 8 ~~~~~vri~~~~l~~~k~v~~aL~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L~~~l~ 72 (152)
.|..+|+.+ .-.-.|.+.-+|..+++ ..+++.+|++|+.++.+||.+|+..|.+.+.
T Consensus 193 ~~~~~v~~~--F~~rrK~l~n~l~~~~~------~~~l~~~~i~~~~R~e~Ls~~~f~~l~~~~~ 249 (252)
T 1qyr_A 193 VLSRITTEA--FNQRRKTIRNSLGNLFS------VEVLTGMGIDPAMRAENISVAQYCQMANYLA 249 (252)
T ss_dssp HHHHHHHHH--HHTTTSBHHHHTTTTCC------HHHHHHTTCCTTSBGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHhCCcHHHHHHhhhhh------HHHHHHcCCCCCCChHHCCHHHHHHHHHHHH
Confidence 355555443 23457888888877654 5578899999999999999999999998875
No 27
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=86.23 E-value=0.57 Score=32.37 Aligned_cols=54 Identities=17% Similarity=0.177 Sum_probs=39.6
Q ss_pred cCCCeeheeehhcccccCHHHHHHHHHHcCCCC---CCCCCCCCHHHHHHHHHHHhC
Q 031813 20 VDGKQKIMFALTSIKGIGRRLANIVCKKADVDM---NKRAGELSAAELDNLMVVVAN 73 (152)
Q Consensus 20 l~~~k~v~~aL~~i~GIG~~~A~~Ic~~lgi~~---~~~~~~Ls~~ei~~L~~~l~~ 73 (152)
++-|..-.-.|+.++|||+.+|.+|.+.=.+.. -..+.-+.+..+++|..++..
T Consensus 18 vdiNtAs~~eL~~lpGIG~~~A~~IV~~GpF~s~edL~~V~Gig~~~~e~l~~~l~~ 74 (97)
T 3arc_U 18 IDLNNTNIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNIPGLTERQKQILRENLEH 74 (97)
T ss_dssp EETTTSCGGGGGGSTTCTTHHHHHHHHHCCCSSGGGGGGCTTCCHHHHHHHHHTGGG
T ss_pred eeCCcCCHHHHhHCCCCCHHHHHHHHHcCCCCCHHHHHhccCCCHHHHHHHHHHhce
Confidence 344444556789999999999999999422222 224666789999999998875
No 28
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=85.88 E-value=0.5 Score=34.73 Aligned_cols=54 Identities=19% Similarity=0.194 Sum_probs=38.9
Q ss_pred cCCCeeheeehhcccccCHHHHHHHHHHcC---CCCCCCCCCCCHHHHHHHHHHHhC
Q 031813 20 VDGKQKIMFALTSIKGIGRRLANIVCKKAD---VDMNKRAGELSAAELDNLMVVVAN 73 (152)
Q Consensus 20 l~~~k~v~~aL~~i~GIG~~~A~~Ic~~lg---i~~~~~~~~Ls~~ei~~L~~~l~~ 73 (152)
|+=|..=...|+.++|||+..|.+|.+--. ++.-..+..+++.+.+.|.+..++
T Consensus 55 IniNtA~~~eL~~LpGiGp~~A~~II~~GpF~svedL~~V~GIg~k~~e~l~~~~~~ 111 (134)
T 1s5l_U 55 IDLNNTNIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNIPGLTERQKQILRENLEH 111 (134)
T ss_dssp EETTTSCGGGGGGSTTCTHHHHHHHHHTCCCSSGGGGGGCTTCCHHHHHHHHHHHTT
T ss_pred eeCcccCHHHHHHCCCCCHHHHHHHHHcCCCCCHHHHHhCCCCCHHHHHHHHHhhcc
Confidence 333444456788999999999999995322 222335666789999999998876
No 29
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=85.85 E-value=0.32 Score=32.56 Aligned_cols=26 Identities=12% Similarity=0.235 Sum_probs=22.8
Q ss_pred eeheeehhcccccCHHHHHHHHHHcC
Q 031813 24 QKIMFALTSIKGIGRRLANIVCKKAD 49 (152)
Q Consensus 24 k~v~~aL~~i~GIG~~~A~~Ic~~lg 49 (152)
..+..+|+.|.|||..+|..|++.+|
T Consensus 28 ~~~~~~L~~IpgIG~~~A~~Ll~~fg 53 (91)
T 2a1j_B 28 SRVTECLTTVKSVNKTDSQTLLTTFG 53 (91)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHCC
Confidence 34567899999999999999999987
No 30
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=85.46 E-value=0.36 Score=31.06 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=22.0
Q ss_pred CCeeheeehhcccccCHHHHHHHHHHcC
Q 031813 22 GKQKIMFALTSIKGIGRRLANIVCKKAD 49 (152)
Q Consensus 22 ~~k~v~~aL~~i~GIG~~~A~~Ic~~lg 49 (152)
-|..-...|..++|||..+|..|.+...
T Consensus 21 iN~a~~~~L~~ipGIG~~~A~~Il~~r~ 48 (75)
T 2duy_A 21 LNEASLEELMALPGIGPVLARRIVEGRP 48 (75)
T ss_dssp TTTCCHHHHTTSTTCCHHHHHHHHHTCC
T ss_pred hhhCCHHHHHhCCCCCHHHHHHHHHHcc
Confidence 3333455688999999999999999763
No 31
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=85.36 E-value=0.59 Score=36.72 Aligned_cols=54 Identities=13% Similarity=0.277 Sum_probs=42.6
Q ss_pred ccchhhhhcCcccCCCeeheeehhcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhC
Q 031813 8 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 73 (152)
Q Consensus 8 ~~~~~vri~~~~l~~~k~v~~aL~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L~~~l~~ 73 (152)
.|.++|+.+ .--..|.+.-+|..+ .++.+||+|++++.+||-+|+..|.+++.+
T Consensus 193 ~~~~~v~~~--F~~rrk~l~~~l~~~----------~l~~~~i~~~~r~e~l~~~~f~~l~~~~~~ 246 (249)
T 3ftd_A 193 NYKKFLTKI--FQNRRKVLRKKIPEE----------LLKEAGINPDARVEQLSLEDFFKLYRLIED 246 (249)
T ss_dssp HHHHHHHHH--HSSTTSCGGGTSCHH----------HHHHTTCCTTCCGGGCCHHHHHHHHHHHHC
T ss_pred HHHHHHHHH--HhCcChhHHHHHHHH----------HHHHCCCCCCCChhhCCHHHHHHHHHHHHH
Confidence 355666552 233477777777764 689999999999999999999999999875
No 32
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=82.32 E-value=0.28 Score=39.45 Aligned_cols=58 Identities=12% Similarity=0.172 Sum_probs=45.8
Q ss_pred ccchhhhhcCcccCCCeeheeehhcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhC
Q 031813 8 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 73 (152)
Q Consensus 8 ~~~~~vri~~~~l~~~k~v~~aL~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L~~~l~~ 73 (152)
.|.++|+.+ .-...|.+.-+|..+.+ ..+++.+||++++++.+||.+|+..|.+++++
T Consensus 217 ~~~~~v~~~--F~~rrK~l~n~L~~~~~------~~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~~~ 274 (279)
T 3uzu_A 217 VLGEVVTAA--FSQRRKMLRNTLGGYRD------LVDFDALGFDLARRAEDIGVDEYVRVAQAVAS 274 (279)
T ss_dssp HHHHHHHHH--GGGTTSBHHHHTGGGTT------TCCTTTTTCCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HhccChHHHHHHHhhcC------HHHHHHCCcCCCCCceeCCHHHHHHHHHHHHH
Confidence 466777653 33457888888887754 35678899999999999999999999998864
No 33
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=80.80 E-value=0.45 Score=37.66 Aligned_cols=56 Identities=11% Similarity=0.176 Sum_probs=42.5
Q ss_pred ccchhhhhcCcccCCCeeheeehhcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHH
Q 031813 8 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVV 71 (152)
Q Consensus 8 ~~~~~vri~~~~l~~~k~v~~aL~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L~~~l 71 (152)
.|.++|+.+ .--..|.+.-+|..+++ ...++.+||++++++.+||.+|+..|.+++
T Consensus 199 ~~~~~v~~~--F~~rrK~l~~~L~~~~~------~~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~ 254 (255)
T 3tqs_A 199 QLSHVVKEA--FSYRRKTVGNALKKLIN------PSQWPLLEINPQLRPQELTVEDFVKISNIL 254 (255)
T ss_dssp HHHHHHHHH--HHSTTSCHHHHTTTTCC------GGGTGGGTCCTTSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHccChHHHHHHhhhCC------HHHHHHCCcCCCCCceeCCHHHHHHHHHHh
Confidence 466666652 23347788888877653 135688999999999999999999998876
No 34
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=80.35 E-value=1.4 Score=33.86 Aligned_cols=43 Identities=19% Similarity=0.158 Sum_probs=31.3
Q ss_pred eheeehhcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHH
Q 031813 25 KIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVV 71 (152)
Q Consensus 25 ~v~~aL~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L~~~l 71 (152)
...-.|.+++|||+.||..||..+|. +..-+- |..+.++..-+
T Consensus 114 ~~~~~L~~lpGIG~kTA~~il~~~~~-~~~~~v---D~~v~Ri~~rl 156 (207)
T 3fhg_A 114 LARERLLNIKGIGMQEASHFLRNVGY-FDLAII---DRHIIDFMRRI 156 (207)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHTTC-CSSCCC---CHHHHHHHHHT
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHhCC-CCccee---cHHHHHHHHHc
Confidence 45667889999999999999987777 333333 46677766654
No 35
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=78.45 E-value=0.34 Score=37.29 Aligned_cols=59 Identities=10% Similarity=0.139 Sum_probs=39.9
Q ss_pred hcCcccCCCeeheeehhcccccCHHHHHHHHHHcCCCCC------------CCCCCCCHHHHHHHHHHHhC
Q 031813 15 VLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMN------------KRAGELSAAELDNLMVVVAN 73 (152)
Q Consensus 15 i~~~~l~~~k~v~~aL~~i~GIG~~~A~~Ic~~lgi~~~------------~~~~~Ls~~ei~~L~~~l~~ 73 (152)
|.|-.=...+.++..|.+|.|||+++|.+|+..+|-+.- .++.-+...-.++|...+.+
T Consensus 59 l~gf~~~~ek~~f~~L~~v~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~~lk~ 129 (191)
T 1ixr_A 59 LYGFPDEENLALFELLLSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIALELKG 129 (191)
T ss_dssp EEEESSHHHHHHHHHHHSSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHHHHHHTT
T ss_pred hhccCCHHHHHHHHHHhcCCCcCHHHHHHHHHhCChHHHHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 444444456666667889999999999999998886211 34444566666666666654
No 36
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=76.66 E-value=0.76 Score=37.27 Aligned_cols=63 Identities=16% Similarity=0.195 Sum_probs=50.0
Q ss_pred cchhhhhcCcccCCCeeheeehhccc---ccCHHHHHHHHHHc-----CCCC--CCCCCCCCHHHHHHHHHHHhC
Q 031813 9 FQHILRVLNTNVDGKQKIMFALTSIK---GIGRRLANIVCKKA-----DVDM--NKRAGELSAAELDNLMVVVAN 73 (152)
Q Consensus 9 ~~~~vri~~~~l~~~k~v~~aL~~i~---GIG~~~A~~Ic~~l-----gi~~--~~~~~~Ls~~ei~~L~~~l~~ 73 (152)
|.++|+.+ .--..|.+.-+|.+.. |+....+..+++.+ |+++ ++++.+||-+|+..|.+++.+
T Consensus 215 ~~~~v~~~--F~~rrK~l~n~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~R~e~Ls~~~f~~L~~~~~~ 287 (295)
T 3gru_A 215 FDDFLRAI--FQHRNKSVRKALIDSSKELNYNKDEMKKILEDFLNTNSEIKNLINEKVFKLSVKDIVNLSNEFYR 287 (295)
T ss_dssp HHHHHHHH--HTTTTSBHHHHHHHTGGGGTCCHHHHHHHHHHHHTTCHHHHHHHTSBGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HccCchHHHHHHhhhhccccCCHHHHHHHHHHhhhcccCCCccccCChhhCCHHHHHHHHHHHHH
Confidence 56666652 2334789999998764 45677888999998 8998 999999999999999998854
No 37
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=75.57 E-value=1.1 Score=34.96 Aligned_cols=59 Identities=15% Similarity=0.260 Sum_probs=41.1
Q ss_pred hcCcccCCCeeheeehhcccccCHHHHHHHHHHcCCCCC------------CCCCCCCHHHHHHHHHHHhC
Q 031813 15 VLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMN------------KRAGELSAAELDNLMVVVAN 73 (152)
Q Consensus 15 i~~~~l~~~k~v~~aL~~i~GIG~~~A~~Ic~~lgi~~~------------~~~~~Ls~~ei~~L~~~l~~ 73 (152)
++|-.-...+.++..|.+|.|||+++|.+|+..++.+.- .++.-+.+.-.++|...+.+
T Consensus 75 LyGF~~~~Er~lf~~L~sv~GIGpk~A~~Ils~~~~~~l~~aI~~~d~~~L~~vpGIG~KtA~rIi~elk~ 145 (212)
T 2ztd_A 75 LYGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRD 145 (212)
T ss_dssp EEEESSHHHHHHHHHHHTSTTCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHTT
T ss_pred eEecCcHHHHHHHHHhcCcCCcCHHHHHHHHHhCCHHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 444444556666777888999999999999988876322 25555666666777776655
No 38
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=75.43 E-value=3.5 Score=27.70 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=19.3
Q ss_pred eeehhcccccCHHHHHHHHHHc
Q 031813 27 MFALTSIKGIGRRLANIVCKKA 48 (152)
Q Consensus 27 ~~aL~~i~GIG~~~A~~Ic~~l 48 (152)
...|..|+|||..+|..|++..
T Consensus 39 ~~~L~~ipGIG~~~A~~Il~~r 60 (98)
T 2edu_A 39 ARDLRSLQRIGPKKAQLIVGWR 60 (98)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHH
Confidence 3458899999999999999876
No 39
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=74.29 E-value=0.49 Score=36.71 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=27.7
Q ss_pred hcCcccCCCeeheeehhcccccCHHHHHHHHHHcCC
Q 031813 15 VLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADV 50 (152)
Q Consensus 15 i~~~~l~~~k~v~~aL~~i~GIG~~~A~~Ic~~lgi 50 (152)
|.|-.=...+.++..|.+|.|||+++|.+|+..+|-
T Consensus 60 l~gf~~~~ek~~f~~L~~V~GIGpk~A~~iL~~f~~ 95 (203)
T 1cuk_A 60 LYGFNNKQERTLFKELIKTNGVGPKLALAILSGMSA 95 (203)
T ss_dssp EEEESSHHHHHHHHHHHHSSSCCHHHHHHHHHHSCH
T ss_pred hhccCCHHHHHHHHHHhcCCCcCHHHHHHHHhhCCh
Confidence 455444555666667889999999999999998885
No 40
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=73.79 E-value=1.4 Score=34.76 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=30.8
Q ss_pred heeehhcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHH
Q 031813 26 IMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNL 67 (152)
Q Consensus 26 v~~aL~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L 67 (152)
....|..|.|||+.+|+.+++.+| .-..+.+-|.||+..+
T Consensus 166 ~~s~LdgIpGIG~k~ak~Ll~~Fg--Sl~~i~~As~EeL~~V 205 (220)
T 2nrt_A 166 LRSVLDNVPGIGPIRKKKLIEHFG--SLENIRSASLEEIARV 205 (220)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHC--SHHHHHTSCHHHHHHH
T ss_pred ccccccCCCCcCHHHHHHHHHHcC--CHHHHHhCCHHHHHHH
Confidence 356789999999999999999998 2233556677777665
No 41
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=72.29 E-value=2.9 Score=32.53 Aligned_cols=42 Identities=17% Similarity=0.071 Sum_probs=31.3
Q ss_pred heeehh-cccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHH
Q 031813 26 IMFALT-SIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVV 71 (152)
Q Consensus 26 v~~aL~-~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L~~~l 71 (152)
..-.|. +++|||+.||..|+..+|. +...+ =|..+.++.+-+
T Consensus 122 ~re~Ll~~LpGVG~KTA~~vL~~~g~-~~~~v---VDthv~Ri~~Rl 164 (214)
T 3fhf_A 122 AREFLVRNIKGIGYKEASHFLRNVGY-DDVAI---IDRHILRELYEN 164 (214)
T ss_dssp HHHHHHHHSTTCCHHHHHHHHHHTTC-CSCCC---CCHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCC-CCccc---CcHHHHHHHHHc
Confidence 445677 9999999999999988876 43332 246888877765
No 42
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=72.26 E-value=2.2 Score=33.29 Aligned_cols=65 Identities=20% Similarity=0.065 Sum_probs=40.7
Q ss_pred heeehh-cccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhCCCCccCCccccCccCCCCCCchhhhhhhhHH
Q 031813 26 IMFALT-SIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALD 104 (152)
Q Consensus 26 v~~aL~-~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L~~~l~~~~~~~ip~w~~nr~~D~~sg~~~~lie~~L~ 104 (152)
..-.|. +++|||+.||..||..+|..|.. + =|..+.++..-+.- ++. ..-..|.++..-++..++
T Consensus 127 ~r~~L~~~l~GVG~kTA~~vL~~~g~~~~~-~---VDthv~Ri~~rlg~-----~~~-----~~k~~t~k~y~~ie~~~~ 192 (219)
T 3n0u_A 127 SREFLVRNAKGIGWKEASHFLRNTGVEDLA-I---LDKHVLRLMKRHGL-----IQE-----IPKGWSKKRYLYVEEILR 192 (219)
T ss_dssp HHHHHHHHSTTCCHHHHHHHHHTTTCCSCC-C---CCHHHHHHHHHTTS-----CSS-----CCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCCCee-e---ecHHHHHHHHHcCC-----CCc-----CcCcCCHHHHHHHHHHHH
Confidence 345577 99999999999999778874433 2 23577776665421 111 012355666666666664
No 43
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=70.14 E-value=4.3 Score=26.53 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=21.1
Q ss_pred HHHcCCCCCCCCCCCCHHHHHHHHHH
Q 031813 45 CKKADVDMNKRAGELSAAELDNLMVV 70 (152)
Q Consensus 45 c~~lgi~~~~~~~~Ls~~ei~~L~~~ 70 (152)
+++|||+. ..+.+|++||+.++..+
T Consensus 37 L~kLGI~k-tdP~~LT~eEi~~FaRL 61 (71)
T 2eo2_A 37 LKKLGIHK-TDPSTLTEEEVRKFARL 61 (71)
T ss_dssp HHHHTCCC-CSTTTCCHHHHHHHHHT
T ss_pred HHHcCCCC-CCcccCCHHHHhhceec
Confidence 57899996 68999999999987664
No 44
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=68.68 E-value=2.2 Score=33.30 Aligned_cols=22 Identities=36% Similarity=0.443 Sum_probs=19.2
Q ss_pred eehhcccccCHHHHHHHHHHcC
Q 031813 28 FALTSIKGIGRRLANIVCKKAD 49 (152)
Q Consensus 28 ~aL~~i~GIG~~~A~~Ic~~lg 49 (152)
-.|++++|||+++|.+|+..+.
T Consensus 123 ~~L~~vpGIG~KtA~rIi~elk 144 (212)
T 2ztd_A 123 AALTRVPGIGKRGAERMVLELR 144 (212)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHT
T ss_pred HHHhhCCCCCHHHHHHHHHHHH
Confidence 4689999999999999997764
No 45
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=68.50 E-value=3 Score=34.47 Aligned_cols=34 Identities=29% Similarity=0.406 Sum_probs=26.5
Q ss_pred cccchhhhhcCcccCCCeeheeehhcccccCHHHHHHHHHHcC
Q 031813 7 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKAD 49 (152)
Q Consensus 7 ~~~~~~vri~~~~l~~~k~v~~aL~~i~GIG~~~A~~Ic~~lg 49 (152)
++|-.+.=+.|+|-.+ .|+|||+.+|..++++.|
T Consensus 220 ~q~id~~~L~G~D~~~---------gipGiG~KtA~kll~~~g 253 (341)
T 3q8k_A 220 EQFVDLCILLGSDYCE---------SIRGIGPKRAVDLIQKHK 253 (341)
T ss_dssp HHHHHHHHHHCCSSSC---------CCTTCCHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCCCC---------CCCCccHHHHHHHHHHcC
Confidence 4677777788866444 378999999999998866
No 46
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=68.34 E-value=4.5 Score=33.48 Aligned_cols=49 Identities=16% Similarity=0.286 Sum_probs=42.4
Q ss_pred CCeeheeehhcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhC
Q 031813 22 GKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 73 (152)
Q Consensus 22 ~~k~v~~aL~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L~~~l~~ 73 (152)
+++.+...|..+ +..+.+..+++..|++ ..++.+|+++|...|.+.|.+
T Consensus 279 ~~~~~~~~l~~~--lp~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~ 327 (401)
T 2gqf_A 279 PKQMLKTILVRL--LPKKLVELWIEQGIVQ-DEVIANISKVRVKNLVDFIHH 327 (401)
T ss_dssp TTSBHHHHHTTT--SCHHHHHHHHHTTSSC-CCBGGGCCHHHHHHHHHHHHC
T ss_pred ccccHHHHhhhh--cCHHHHHHHHHHcCCC-CCchhhCCHHHHHHHHHHHhc
Confidence 467777777765 7799999999999998 688999999999999999987
No 47
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=67.47 E-value=6.1 Score=32.99 Aligned_cols=49 Identities=27% Similarity=0.393 Sum_probs=41.4
Q ss_pred CCeeheeehhcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhC
Q 031813 22 GKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 73 (152)
Q Consensus 22 ~~k~v~~aL~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L~~~l~~ 73 (152)
+++.+...|.. .+....+..+|+.+++ +++++.+|+++++.+|.+.|.+
T Consensus 298 ~~~~~~~~l~~--~lp~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~ 346 (417)
T 3v76_A 298 GRQAVQTALAD--ILPRRLAQFFADEAKL-TGRMLADLSDKTIDALASSIQV 346 (417)
T ss_dssp CSSBHHHHHTT--TSCHHHHHHHHHHTTC-TTCBGGGCCHHHHHHHHHHHHS
T ss_pred hhhhHHHHHHH--HhhHHHHHHHHHhcCC-CCCchhhCCHHHHHHHHHHhcC
Confidence 45555555554 3778999999999999 9999999999999999999987
No 48
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=67.17 E-value=1.1 Score=35.36 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=0.0
Q ss_pred eeheeehhcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHH
Q 031813 24 QKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNL 67 (152)
Q Consensus 24 k~v~~aL~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L 67 (152)
......|..|.|||..+|+.|++.+|= -..+.+-|.+|+..+
T Consensus 169 ~~~~s~L~~IpGIG~k~ak~Ll~~FGS--l~~i~~As~eeL~~V 210 (226)
T 3c65_A 169 TMFHSVLDDIPGVGEKRKKALLNYFGS--VKKMKEATVEELQRA 210 (226)
T ss_dssp --------------------------------------------
T ss_pred ccccccccccCCCCHHHHHHHHHHhCC--HHHHHhCCHHHHHHc
Confidence 345678999999999999999999873 223444455555554
No 49
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=66.75 E-value=1.2 Score=35.50 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=0.0
Q ss_pred ehhcccccCHHHHHHHHHHcCCCCCCCC
Q 031813 29 ALTSIKGIGRRLANIVCKKADVDMNKRA 56 (152)
Q Consensus 29 aL~~i~GIG~~~A~~Ic~~lgi~~~~~~ 56 (152)
.|..|.|||+.+|..|++. |+..-..+
T Consensus 16 ~L~~IpGIGpk~a~~Ll~~-gf~sve~L 42 (241)
T 1vq8_Y 16 ELTDISGVGPSKAESLREA-GFESVEDV 42 (241)
T ss_dssp ----------------------------
T ss_pred HHhcCCCCCHHHHHHHHHc-CCCCHHHH
Confidence 5667777777777777776 55543333
No 50
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=65.22 E-value=3.3 Score=31.99 Aligned_cols=41 Identities=17% Similarity=-0.022 Sum_probs=27.5
Q ss_pred heeehhcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHH
Q 031813 26 IMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVV 70 (152)
Q Consensus 26 v~~aL~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L~~~ 70 (152)
..-.|.+++|||+.||..||-.+.=.| .-+ -|..+.++..-
T Consensus 119 ~~~~L~~lpGIG~kTA~~il~~a~~~~-~~~---vD~~v~Ri~~r 159 (218)
T 1pu6_A 119 TREWLLDQKGIGKESADAILCYACAKE-VMV---VDKYSYLFLKK 159 (218)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHHTTCCS-CCC---CCHHHHHHHHH
T ss_pred HHHHHHcCCCcCHHHHHHHHHHHCCCC-ccc---cCHHHHHHHHH
Confidence 345689999999999999998754333 222 24556665443
No 51
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=63.98 E-value=2.7 Score=32.04 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=21.8
Q ss_pred heeehhcccccCHHHHHHHHHHcCC
Q 031813 26 IMFALTSIKGIGRRLANIVCKKADV 50 (152)
Q Consensus 26 v~~aL~~i~GIG~~~A~~Ic~~lgi 50 (152)
..+.|..|+|||..+|..|++.+|=
T Consensus 160 ~~~~L~~i~gVg~~~a~~Ll~~fgs 184 (219)
T 2bgw_A 160 QLYILQSFPGIGRRTAERILERFGS 184 (219)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHHSS
T ss_pred HHHHHhcCCCCCHHHHHHHHHHcCC
Confidence 3457889999999999999999883
No 52
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=63.98 E-value=3.5 Score=30.65 Aligned_cols=36 Identities=11% Similarity=0.057 Sum_probs=26.1
Q ss_pred cchhhhhcCcccCCCeeheeehhcccccCHHHHHHHHHH
Q 031813 9 FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKK 47 (152)
Q Consensus 9 ~~~~vri~~~~l~~~k~v~~aL~~i~GIG~~~A~~Ic~~ 47 (152)
.+.|+.+++-.+|.+. -.|.+++|||++||.+++--
T Consensus 88 Ak~i~~~a~~~vp~~~---~~L~~LpGVG~yTAdav~~F 123 (161)
T 4e9f_A 88 AKTIVKFSDEYLTKQW---KYPIELHGIGKYGNDSYRIF 123 (161)
T ss_dssp HHHHHHHHHHHHHSCC---SSGGGSTTCCHHHHHHHHHH
T ss_pred HHHHHHHhCCcCCCCh---hhhhcCCCchHHHHHHHHHH
Confidence 4455556655566553 46889999999999998654
No 53
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=62.48 E-value=4.1 Score=31.33 Aligned_cols=31 Identities=6% Similarity=-0.110 Sum_probs=27.6
Q ss_pred HHHHHcCCCCCCCCCCCCHHHHHHHHHHHhC
Q 031813 43 IVCKKADVDMNKRAGELSAAELDNLMVVVAN 73 (152)
Q Consensus 43 ~Ic~~lgi~~~~~~~~Ls~~ei~~L~~~l~~ 73 (152)
.+++.+|++|+.++.+||-+|+..|.+.+.+
T Consensus 211 ~~~~~~~~~~~~r~e~l~~~~~~~l~~~~~~ 241 (244)
T 1qam_A 211 QFNNSLKHAGIDDLNNISFEQFLSLFNSYKL 241 (244)
T ss_dssp HHHHHHHHHTCSCTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCceeCCHHHHHHHHHHHHH
Confidence 3578899999999999999999999998864
No 54
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=62.01 E-value=3.3 Score=32.55 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=31.1
Q ss_pred eheeehhcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhC
Q 031813 25 KIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 73 (152)
Q Consensus 25 ~v~~aL~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L~~~l~~ 73 (152)
.+..+|.+++|||+++|.++.-.+= ...++++..|.++|.+
T Consensus 23 ~LI~~l~~LPGIG~KsA~RlA~hLL--------~~~~~~~~~La~al~~ 63 (212)
T 3vdp_A 23 KLIEELSKLPGIGPKTAQRLAFFII--------NMPLDEVRSLSQAIIE 63 (212)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHHHT--------TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHH--------cCCHHHHHHHHHHHHH
Confidence 4557899999999999999975442 2456778887777764
No 55
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=61.27 E-value=3.9 Score=31.19 Aligned_cols=23 Identities=39% Similarity=0.562 Sum_probs=19.6
Q ss_pred heeehhcccccCHHHHHHHHHHc
Q 031813 26 IMFALTSIKGIGRRLANIVCKKA 48 (152)
Q Consensus 26 v~~aL~~i~GIG~~~A~~Ic~~l 48 (152)
..-.|.+++|||+.+|..|+-.+
T Consensus 107 ~~~~L~~l~GIG~~tA~~il~~~ 129 (211)
T 2abk_A 107 DRAALEALPGVGRKTANVVLNTA 129 (211)
T ss_dssp CHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCChHHHHHHHHHH
Confidence 34568999999999999999764
No 56
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=60.98 E-value=3.3 Score=34.17 Aligned_cols=30 Identities=13% Similarity=0.230 Sum_probs=23.3
Q ss_pred CCeeheeehhcccccCHHHHHHHHHHcCCCC
Q 031813 22 GKQKIMFALTSIKGIGRRLANIVCKKADVDM 52 (152)
Q Consensus 22 ~~k~v~~aL~~i~GIG~~~A~~Ic~~lgi~~ 52 (152)
..-++.-.|++|+|||+++|..+.+. |+..
T Consensus 90 ~~~p~l~ll~~v~GiG~k~a~~l~~~-Gi~t 119 (335)
T 2bcq_A 90 ESVPVLELFSNIWGAGTKTAQMWYQQ-GFRS 119 (335)
T ss_dssp TTHHHHHHHHTSTTCCHHHHHHHHHT-TCCS
T ss_pred hhhHHHHHHhcCCCcCHHHHHHHHHc-CCCC
Confidence 33445556689999999999999877 8764
No 57
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=60.90 E-value=4.2 Score=31.40 Aligned_cols=42 Identities=10% Similarity=0.135 Sum_probs=28.3
Q ss_pred heeehhcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHH
Q 031813 26 IMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVV 71 (152)
Q Consensus 26 v~~aL~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L~~~l 71 (152)
..-.|.+++|||+.||..|+..+-=.|.. + -|.-+.++..-+
T Consensus 107 ~~~~L~~lpGIG~~TA~~il~~a~~~~~~-~---vD~~v~Rv~~rl 148 (225)
T 1kg2_A 107 TFEEVAALPGVGRSTAGAILSLSLGKHFP-I---LDGNVKRVLARC 148 (225)
T ss_dssp SHHHHHTSTTCCHHHHHHHHHHHHCCSCC-C---CCHHHHHHHHHH
T ss_pred HHHHHhcCCCCcHHHHHHHHHHhCCCCcc-e---eCHHHHHHHHHH
Confidence 34578999999999999999764222321 2 445666665544
No 58
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=60.84 E-value=4.2 Score=31.32 Aligned_cols=20 Identities=30% Similarity=0.508 Sum_probs=17.9
Q ss_pred ehhcccccCHHHHHHHHHHc
Q 031813 29 ALTSIKGIGRRLANIVCKKA 48 (152)
Q Consensus 29 aL~~i~GIG~~~A~~Ic~~l 48 (152)
.|++++|||+++|.+|+..+
T Consensus 109 ~L~~vpGIG~K~A~rI~~el 128 (203)
T 1cuk_A 109 ALVKLPGIGKKTAERLIVEM 128 (203)
T ss_dssp HHHTSTTCCHHHHHHHHHHH
T ss_pred HHhhCCCCCHHHHHHHHHHH
Confidence 58999999999999998655
No 59
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=60.57 E-value=4.4 Score=30.98 Aligned_cols=21 Identities=43% Similarity=0.626 Sum_probs=19.0
Q ss_pred ehhcccccCHHHHHHHHHHcC
Q 031813 29 ALTSIKGIGRRLANIVCKKAD 49 (152)
Q Consensus 29 aL~~i~GIG~~~A~~Ic~~lg 49 (152)
.|++++|||+++|.+|+..+.
T Consensus 108 ~L~~vpGIG~K~A~rI~~~lk 128 (191)
T 1ixr_A 108 LLTSASGVGRRLAERIALELK 128 (191)
T ss_dssp HHTTSTTCCHHHHHHHHHHHT
T ss_pred HHHhCCCCCHHHHHHHHHHHH
Confidence 589999999999999998774
No 60
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=60.28 E-value=12 Score=29.69 Aligned_cols=29 Identities=28% Similarity=0.289 Sum_probs=22.7
Q ss_pred heeehhcccccCHHHHHHHHHHcCCCCCC
Q 031813 26 IMFALTSIKGIGRRLANIVCKKADVDMNK 54 (152)
Q Consensus 26 v~~aL~~i~GIG~~~A~~Ic~~lgi~~~~ 54 (152)
+.-.|.+++|||+.||..||-..-=.|+.
T Consensus 205 ~~~~L~~lpGIG~~TA~~ill~~lg~~d~ 233 (282)
T 1mpg_A 205 AMKTLQTFPGIGRWTANYFALRGWQAKDV 233 (282)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHSCCSSC
T ss_pred HHHHHhcCCCcCHHHHHHHHHHhCCCCCc
Confidence 46789999999999999999874334433
No 61
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=59.95 E-value=4.3 Score=35.65 Aligned_cols=28 Identities=14% Similarity=0.428 Sum_probs=23.8
Q ss_pred eeheeehhcccccCHHHHHHHHHHcCCC
Q 031813 24 QKIMFALTSIKGIGRRLANIVCKKADVD 51 (152)
Q Consensus 24 k~v~~aL~~i~GIG~~~A~~Ic~~lgi~ 51 (152)
......|.+++|||+++|..|+..+|+.
T Consensus 89 ~~~~~~l~~v~GvGpk~A~~~~~~lg~~ 116 (575)
T 3b0x_A 89 PRGVLEVMEVPGVGPKTARLLYEGLGID 116 (575)
T ss_dssp CHHHHHHHTSTTTCHHHHHHHHHTSCCC
T ss_pred HHHHHHHhcCCCcCHHHHHHHHHhcCCC
Confidence 4456778999999999999999988764
No 62
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=59.85 E-value=5.8 Score=30.54 Aligned_cols=41 Identities=15% Similarity=0.059 Sum_probs=27.8
Q ss_pred eeehhcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHH
Q 031813 27 MFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVV 71 (152)
Q Consensus 27 ~~aL~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L~~~l 71 (152)
.-.|.+++|||+.+|..|+..+.=.|. -+ -|..+.++..-+
T Consensus 114 ~~~L~~lpGIG~~TA~~il~~~~~~~~-~~---vD~~v~Rv~~rl 154 (221)
T 1kea_A 114 RKAILDLPGVGKYTCAAVMCLAFGKKA-AM---VDANFVRVINRY 154 (221)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCCCC-CC---CCHHHHHHHHHH
T ss_pred HHHHHhCCCCcHHHHHHHHHHhcCCCc-ce---ecHHHHHHHHHH
Confidence 456899999999999999987543332 22 235566655544
No 63
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=59.41 E-value=4.6 Score=31.30 Aligned_cols=25 Identities=32% Similarity=0.406 Sum_probs=20.8
Q ss_pred heeehhcccccCHHHHHHHHHH-cCC
Q 031813 26 IMFALTSIKGIGRRLANIVCKK-ADV 50 (152)
Q Consensus 26 v~~aL~~i~GIG~~~A~~Ic~~-lgi 50 (152)
..-.|.+++|||+.||..|+.. +|.
T Consensus 111 ~~~~L~~lpGIG~~TA~~il~~a~g~ 136 (226)
T 1orn_A 111 DRDELMKLPGVGRKTANVVVSVAFGV 136 (226)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHHHHCC
T ss_pred HHHHHHHCCCccHHHHHHHHHHHCCC
Confidence 4567899999999999999976 454
No 64
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=59.28 E-value=5.5 Score=24.68 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=18.7
Q ss_pred ehhcccccCHHHHHHHHHHcC
Q 031813 29 ALTSIKGIGRRLANIVCKKAD 49 (152)
Q Consensus 29 aL~~i~GIG~~~A~~Ic~~lg 49 (152)
.|..+.|||...|..|+..+.
T Consensus 47 ~L~~i~Gig~~~a~~i~~~~~ 67 (75)
T 1x2i_A 47 ELMKVEGIGEKIAKEIRRVIT 67 (75)
T ss_dssp HHTTSTTCCHHHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHh
Confidence 478999999999999998875
No 65
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=58.98 E-value=5.5 Score=33.24 Aligned_cols=58 Identities=19% Similarity=0.204 Sum_probs=36.0
Q ss_pred cccchhhhhcCcc-cCCCeeheeehhcccccCHHHHHHHHHHcCCCCCCCCC-----CCCHHHHHHHHHHHhCCC
Q 031813 7 EDFQHILRVLNTN-VDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAG-----ELSAAELDNLMVVVANPR 75 (152)
Q Consensus 7 ~~~~~~vri~~~~-l~~~k~v~~aL~~i~GIG~~~A~~Ic~~lgi~~~~~~~-----~Ls~~ei~~L~~~l~~~~ 75 (152)
++|-.+.=+.|+| +|. .|+|||..+|..++++.|== ..-+. .+. .....+.+++-+|.
T Consensus 238 ~q~id~~~L~GsDy~p~---------GVpGIG~KtA~kLl~~~gsl-e~il~~~~~~~~~-~~~~~~~~~f~~p~ 301 (363)
T 3ory_A 238 ENLIDIGILLGTDYNPD---------GFEGIGPKKALQLVKAYGGI-EKIPKPILKSPIE-VDVIAIKKYFLQPQ 301 (363)
T ss_dssp HHHHHHHHHHCBTTBTT---------CSTTCCHHHHHHHHHHHTSS-TTSCGGGCCCSSC-CCHHHHHHHHHSCC
T ss_pred HHHHHHHHHhCCCCCCC---------CCCCcCHHHHHHHHHHcCCH-HHHHHhcccccCC-CCHHHHHHHhcCCC
Confidence 4566677777855 331 68899999999999998711 11111 121 12356677777763
No 66
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=58.17 E-value=5 Score=33.07 Aligned_cols=41 Identities=20% Similarity=0.228 Sum_probs=28.4
Q ss_pred heeehhcccccCHHHHHHHHHHcCCCCCCC----CCCCCHHHHHHH
Q 031813 26 IMFALTSIKGIGRRLANIVCKKADVDMNKR----AGELSAAELDNL 67 (152)
Q Consensus 26 v~~aL~~i~GIG~~~A~~Ic~~lgi~~~~~----~~~Ls~~ei~~L 67 (152)
....|++|+|||+++|..+.++ |+..-.. -+.|+..+..-|
T Consensus 96 ~l~~l~~V~GiGpk~a~~l~~~-Gi~tledL~~a~~~l~~~~~~gl 140 (335)
T 2fmp_A 96 SINFLTRVSGIGPSAARKFVDE-GIKTLEDLRKNEDKLNHHQRIGL 140 (335)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHT-TCCSHHHHHTCGGGSCHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHc-CCCCHHHHHHhhhhhHHHHHHHH
Confidence 3566899999999999999888 9875221 234555444433
No 67
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=55.76 E-value=6.2 Score=22.55 Aligned_cols=41 Identities=15% Similarity=0.083 Sum_probs=31.8
Q ss_pred hhcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHH
Q 031813 30 LTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVV 71 (152)
Q Consensus 30 L~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L~~~l 71 (152)
|.+-.|++.......+..+|+ .......+++++...|.+.+
T Consensus 8 lAkel~~~~k~l~~~l~~~g~-~k~~~s~l~~~~~~~l~~~~ 48 (49)
T 1nd9_A 8 LAAERQTSVERLVQQFADAGI-RKSADDSVSAQEKQTLIDHL 48 (49)
T ss_dssp HHHHHSSSHHHHHHHHHHHTS-CCSSSSCEETTGGGHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHcCC-CCCCCCcCCHHHHHHHHHHh
Confidence 444558999999999999999 44556668888888877654
No 68
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=55.01 E-value=6 Score=32.95 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=27.7
Q ss_pred eeehhcccccCHHHHHHHHHHcCCCCC----CCCCCCCHHHHHH
Q 031813 27 MFALTSIKGIGRRLANIVCKKADVDMN----KRAGELSAAELDN 66 (152)
Q Consensus 27 ~~aL~~i~GIG~~~A~~Ic~~lgi~~~----~~~~~Ls~~ei~~ 66 (152)
...|.+|+|||+++|..+.+. |+..- .+-+.|++.|..-
T Consensus 101 l~~l~~I~GvG~kta~~l~~~-Gi~tledL~~~~~~L~~~~~~G 143 (360)
T 2ihm_A 101 MKLFTQVFGVGVKTANRWYQE-GLRTLDELREQPQRLTQQQKAG 143 (360)
T ss_dssp HHHHHTSTTCCHHHHHHHHHT-TCCSHHHHHTCCTTCCHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHc-CCCCHHHHHhcccchHHHHHHH
Confidence 456789999999999999877 88642 2334566544433
No 69
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=53.90 E-value=6.6 Score=31.12 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=32.0
Q ss_pred eeheeehhcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhC
Q 031813 24 QKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 73 (152)
Q Consensus 24 k~v~~aL~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L~~~l~~ 73 (152)
..+..+|.+++|||+++|.++.-.+= ...++++..|.++|.+
T Consensus 8 ~~LI~~l~~LPGIG~KSA~RlA~hLL--------~~~~~~~~~La~al~~ 49 (228)
T 1vdd_A 8 VSLIRELSRLPGIGPKSAQRLAFHLF--------EQPREDIERLASALLE 49 (228)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHHHHHS--------SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhHCCCCCHHHHHHHHHHHH--------cCCHHHHHHHHHHHHH
Confidence 45667899999999999999975432 2457788888877754
No 70
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=53.85 E-value=5.8 Score=30.74 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=20.5
Q ss_pred eheeehhcccccCHHHHHHHHHHc
Q 031813 25 KIMFALTSIKGIGRRLANIVCKKA 48 (152)
Q Consensus 25 ~v~~aL~~i~GIG~~~A~~Ic~~l 48 (152)
.+.-.|.+++|||+.||..||-..
T Consensus 143 e~~~~L~~l~GIG~~TA~~ill~~ 166 (225)
T 2yg9_A 143 LVIAELVQLPGIGRWTAEMFLLFA 166 (225)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHh
Confidence 446678999999999999999874
No 71
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=53.67 E-value=5.9 Score=30.81 Aligned_cols=28 Identities=29% Similarity=0.310 Sum_probs=21.8
Q ss_pred heeehhcccccCHHHHHHHHHHcCCCCC
Q 031813 26 IMFALTSIKGIGRRLANIVCKKADVDMN 53 (152)
Q Consensus 26 v~~aL~~i~GIG~~~A~~Ic~~lgi~~~ 53 (152)
+.-.|++++|||+.||..||-..-=.|+
T Consensus 137 ~~~~L~~l~GIG~~TA~~ill~~lg~pd 164 (228)
T 3s6i_A 137 LIERLTQIKGIGRWTVEMLLIFSLNRDD 164 (228)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHTSCCSS
T ss_pred HHHHHHhCCCcCHHHHHHHHHHhCCCCC
Confidence 3667999999999999999976433343
No 72
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=53.06 E-value=6.7 Score=32.97 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=21.6
Q ss_pred eeehhcccccCHHHHHHHHHHcCCCC
Q 031813 27 MFALTSIKGIGRRLANIVCKKADVDM 52 (152)
Q Consensus 27 ~~aL~~i~GIG~~~A~~Ic~~lgi~~ 52 (152)
...|.+|+|||.++|..+.++ |+..
T Consensus 120 l~~l~~I~GvGpk~a~~ly~~-Gi~t 144 (381)
T 1jms_A 120 FKLFTSVFGVGLKTAEKWFRM-GFRT 144 (381)
T ss_dssp HHHHHTSTTCCHHHHHHHHHT-TCCS
T ss_pred HHHHHccCCCCHHHHHHHHHc-CCCc
Confidence 457789999999999999887 8865
No 73
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=52.91 E-value=12 Score=29.09 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=21.5
Q ss_pred eheeehhcccccCHHHHHHHHHHc-CC
Q 031813 25 KIMFALTSIKGIGRRLANIVCKKA-DV 50 (152)
Q Consensus 25 ~v~~aL~~i~GIG~~~A~~Ic~~l-gi 50 (152)
.+.-.|.+++|||+.||..|+-.+ |-
T Consensus 135 ~~~~~L~~lpGIG~kTA~~ill~alg~ 161 (233)
T 2h56_A 135 TVIEKLTAIKGIGQWTAEMFMMFSLGR 161 (233)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCcCHHHHHHHHHHhCCC
Confidence 456678999999999999999874 44
No 74
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=51.38 E-value=6 Score=31.84 Aligned_cols=43 Identities=12% Similarity=0.118 Sum_probs=30.2
Q ss_pred eheeehhcccccCHHHHHHHHHH-cCCCCCCCCCCCCHHHHHHHHHHH
Q 031813 25 KIMFALTSIKGIGRRLANIVCKK-ADVDMNKRAGELSAAELDNLMVVV 71 (152)
Q Consensus 25 ~v~~aL~~i~GIG~~~A~~Ic~~-lgi~~~~~~~~Ls~~ei~~L~~~l 71 (152)
...-.|.+++|||+.||..||-. +|- |+.-+- |--+.++...+
T Consensus 208 ~~~~~L~~lpGIG~~TA~~ill~~lg~-pd~fpv---D~~v~r~~~rl 251 (290)
T 3i0w_A 208 ECHEELKKFMGVGPQVADCIMLFSMQK-YSAFPV---DTWVKKAMMSL 251 (290)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHHCC-TTCCCC---CHHHHHHHHHH
T ss_pred HHHHHHHhCCCcCHHHHHHHHHHhCCC-CCccee---cHHHHHHHHHh
Confidence 45677999999999999999977 454 333332 45666666554
No 75
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=51.33 E-value=7.6 Score=31.19 Aligned_cols=31 Identities=39% Similarity=0.374 Sum_probs=23.9
Q ss_pred heeehhcccccCHHHHHHHHHH-cCCCCCC-CCCC
Q 031813 26 IMFALTSIKGIGRRLANIVCKK-ADVDMNK-RAGE 58 (152)
Q Consensus 26 v~~aL~~i~GIG~~~A~~Ic~~-lgi~~~~-~~~~ 58 (152)
+.-.|.+++|||+.||..||-. +| |+. .+.+
T Consensus 208 ~~~~L~~lpGIG~~TA~~ill~~lg--~d~fpvdD 240 (295)
T 2jhn_A 208 AYEYLTSFKGIGRWTAELVLSIALG--KNVFPADD 240 (295)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHTTC--CCCCCTTC
T ss_pred HHHHHhcCCCcCHHHHHHHHHHccC--CCcccchH
Confidence 4567999999999999999987 45 444 4444
No 76
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=50.74 E-value=11 Score=29.48 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=29.9
Q ss_pred eheeehhcccccCHHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHHHHH
Q 031813 25 KIMFALTSIKGIGRRLANIVCKKADVDMNK-RAGELSAAELDNLMVVV 71 (152)
Q Consensus 25 ~v~~aL~~i~GIG~~~A~~Ic~~lgi~~~~-~~~~Ls~~ei~~L~~~l 71 (152)
.+.-.|++++|||+.||..||-..-=.|+. .++| --+.++...+
T Consensus 147 ~~~~~L~~l~GIG~~TA~~ill~alg~pd~fpv~D---~~v~r~~~rl 191 (232)
T 4b21_A 147 ELMESLSKIKGVKRWTIEMYSIFTLGRLDIMPADD---STLKNEAKEF 191 (232)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCCTTC---HHHHHHHHHH
T ss_pred HHHHHHHhCCCcCHHHHHHHHHHhCCCCCeeeCcc---HHHHHHHHHH
Confidence 356789999999999999999875434443 3434 4555554443
No 77
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=50.50 E-value=8.9 Score=24.97 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=18.7
Q ss_pred ehhcccccCHHHHHHHHHHcC
Q 031813 29 ALTSIKGIGRRLANIVCKKAD 49 (152)
Q Consensus 29 aL~~i~GIG~~~A~~Ic~~lg 49 (152)
.|..+.|||..+|..|...+.
T Consensus 52 eL~~i~GIG~~~a~~I~~~l~ 72 (89)
T 1z00_A 52 DLALCPGLGPQKARRLFDVLH 72 (89)
T ss_dssp HHHTSTTCCHHHHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHH
Confidence 478899999999999998875
No 78
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=49.42 E-value=19 Score=28.22 Aligned_cols=33 Identities=12% Similarity=0.155 Sum_probs=29.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhC
Q 031813 40 LANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 73 (152)
Q Consensus 40 ~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L~~~l~~ 73 (152)
.+..+++.+|++ ++++.+||.+|+..|.+++.+
T Consensus 247 ~~~~~l~~~~~~-~~R~e~l~~~~f~~l~~~~~~ 279 (285)
T 1zq9_A 247 KIQQILTSTGFS-DKRARSMDIDDFIRLLHGFNA 279 (285)
T ss_dssp HHHHHHHHHTCT-TCBGGGCCHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCC-CCChhhCCHHHHHHHHHHHHH
Confidence 446778999998 789999999999999999875
No 79
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=48.99 E-value=8.9 Score=31.93 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=25.6
Q ss_pred cccchhhhhcCcccCCCeeheeehhcccccCHHHHHHHHHHcC
Q 031813 7 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKAD 49 (152)
Q Consensus 7 ~~~~~~vri~~~~l~~~k~v~~aL~~i~GIG~~~A~~Ic~~lg 49 (152)
++|-.+.=++|+|-.++ |+|||..+|..++++.|
T Consensus 220 ~q~id~~~L~G~D~~d~---------IpGIG~KtA~kLl~~~g 253 (379)
T 1ul1_X 220 EQFVDLCILLGSDYCES---------IRGIGPKRAVDLIQKHK 253 (379)
T ss_dssp HHHHHHHHHHHCSSSCC---------CTTCCHHHHHHHHHHSS
T ss_pred HHHHHHHHHhCCCcCCC---------CCCcCHHHHHHHHHHcC
Confidence 45666666777666553 58999999999998865
No 80
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=48.25 E-value=8.6 Score=31.68 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=20.0
Q ss_pred heeehhcccccCHHHHHHHHHHc
Q 031813 26 IMFALTSIKGIGRRLANIVCKKA 48 (152)
Q Consensus 26 v~~aL~~i~GIG~~~A~~Ic~~l 48 (152)
..-.|.+++|||+.||..|+..+
T Consensus 116 ~~~~L~~l~GIG~~tA~~il~~~ 138 (369)
T 3fsp_A 116 DPDEFSRLKGVGPYTVGAVLSLA 138 (369)
T ss_dssp SHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHhcCCCcCHHHHHHHHHHH
Confidence 45678999999999999999875
No 81
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=47.88 E-value=12 Score=31.56 Aligned_cols=39 Identities=13% Similarity=0.341 Sum_probs=30.8
Q ss_pred eehhcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHH
Q 031813 28 FALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDN 66 (152)
Q Consensus 28 ~aL~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~ 66 (152)
.-+..+.|||..++..+++.+||..-..+..++.+++.+
T Consensus 253 lpv~~l~GiG~~~~~~lL~~lGI~TigdLa~~~~~~L~~ 291 (435)
T 4ecq_A 253 MPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQS 291 (435)
T ss_dssp CBGGGSTTCSSHHHHHHHHHHTCCBGGGGGGSCHHHHHH
T ss_pred CCHHHhcCCCHHHHHHHHHHcCCCcHHHHhhCCHHHHHH
Confidence 346789999999999999999998755666667766643
No 82
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=47.64 E-value=9.2 Score=33.64 Aligned_cols=23 Identities=39% Similarity=0.436 Sum_probs=21.3
Q ss_pred eeehhcccccCHHHHHHHHHHcC
Q 031813 27 MFALTSIKGIGRRLANIVCKKAD 49 (152)
Q Consensus 27 ~~aL~~i~GIG~~~A~~Ic~~lg 49 (152)
.+-|++|.|||+.+|..+++++|
T Consensus 467 eamLtAIaGIGp~tAeRLLEkFG 489 (685)
T 4gfj_A 467 YASLISIRGIDRERAERLLKKYG 489 (685)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHT
T ss_pred eeeeeccCCCCHHHHHHHHHHhc
Confidence 47789999999999999999987
No 83
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=46.74 E-value=9.4 Score=33.56 Aligned_cols=27 Identities=15% Similarity=0.343 Sum_probs=21.7
Q ss_pred eeheeehhcccccCHHHHHHHHHHcCCC
Q 031813 24 QKIMFALTSIKGIGRRLANIVCKKADVD 51 (152)
Q Consensus 24 k~v~~aL~~i~GIG~~~A~~Ic~~lgi~ 51 (152)
+.....|.+++|||+++|..|... |+.
T Consensus 93 ~~~~~~L~~v~GVGpk~A~~i~~~-G~~ 119 (578)
T 2w9m_A 93 PPGLLDLLGVRGLGPKKIRSLWLA-GID 119 (578)
T ss_dssp CHHHHHHTTSTTCCHHHHHHHHHT-TCC
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHc-CCC
Confidence 345567899999999999999976 553
No 84
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=46.70 E-value=11 Score=29.48 Aligned_cols=20 Identities=15% Similarity=0.459 Sum_probs=17.3
Q ss_pred eehhcccccCHHHHHHHHHH
Q 031813 28 FALTSIKGIGRRLANIVCKK 47 (152)
Q Consensus 28 ~aL~~i~GIG~~~A~~Ic~~ 47 (152)
-.|..++|||+.+|.+|.+.
T Consensus 132 ~eL~~LpGIG~k~A~~IIey 151 (205)
T 2i5h_A 132 HQLELLPGVGKKMMWAIIEE 151 (205)
T ss_dssp BGGGGSTTCCHHHHHHHHHH
T ss_pred HHHhcCCCcCHHHHHHHHHH
Confidence 45788999999999999865
No 85
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=43.60 E-value=28 Score=25.58 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=17.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhC
Q 031813 53 NKRAGELSAAELDNLMVVVAN 73 (152)
Q Consensus 53 ~~~~~~Ls~~ei~~L~~~l~~ 73 (152)
...++.||++|-+.|.++|..
T Consensus 11 ~~dLs~LteeEr~~Il~VL~R 31 (153)
T 2zet_C 11 RLDLSTLTDEEAEHVWAVVQR 31 (153)
T ss_dssp CCCCTTSCHHHHHHHHHHHHH
T ss_pred CCCcccCCHHHHHHHHHHHHh
Confidence 345788999999999999976
No 86
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=42.65 E-value=17 Score=30.20 Aligned_cols=42 Identities=17% Similarity=0.160 Sum_probs=28.0
Q ss_pred eheeehhcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHH
Q 031813 25 KIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMV 69 (152)
Q Consensus 25 ~v~~aL~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L~~ 69 (152)
...-.|.+++|||+.+|..||-..-=.|+.-+- |..+.++..
T Consensus 250 ~~~~~L~~LpGIGp~TA~~ill~alg~pd~fpv---DthV~Ri~~ 291 (360)
T 2xhi_A 250 EAHKALCILPGVGTCVADKICLMALDKPQAVPV---NVHMWHIAQ 291 (360)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHSCCTTCCCC---SHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHhCCCCCEEEe---cHHHHHHHH
Confidence 456778999999999999999774223333322 345555544
No 87
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=42.07 E-value=14 Score=24.58 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=16.3
Q ss_pred hhcccccCHHHHHHHHHHc
Q 031813 30 LTSIKGIGRRLANIVCKKA 48 (152)
Q Consensus 30 L~~i~GIG~~~A~~Ic~~l 48 (152)
+..+.|||..+|..|-++|
T Consensus 60 ~~~L~giG~ki~~~L~e~L 78 (87)
T 2kp7_A 60 AKILQHFGDRLCRMLDEKL 78 (87)
T ss_dssp HHTCTTTCHHHHHHHHHHH
T ss_pred HHHhhcccHHHHHHHHHHH
Confidence 4689999999999997765
No 88
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=41.35 E-value=14 Score=30.19 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=25.5
Q ss_pred cccchhhhhcCcccCCCeeheeehhcccccCHHHHHHHHHHcC
Q 031813 7 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKAD 49 (152)
Q Consensus 7 ~~~~~~vri~~~~l~~~k~v~~aL~~i~GIG~~~A~~Ic~~lg 49 (152)
++|-.+.=+.|+|--+. .|+|||..+|..++++.|
T Consensus 224 ~q~id~~~L~G~Dy~p~--------gv~GiG~ktA~kli~~~g 258 (340)
T 1b43_A 224 EKLIELAILVGTDYNPG--------GIKGIGLKKALEIVRHSK 258 (340)
T ss_dssp HHHHHHHHHHCCTTSTT--------CSTTCCHHHHHHHHHTCS
T ss_pred HHHHHHHHhcCCCCCCC--------CCCCccHHHHHHHHHHcC
Confidence 34555666667543331 699999999999999876
No 89
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=40.86 E-value=13 Score=30.15 Aligned_cols=41 Identities=17% Similarity=0.215 Sum_probs=26.1
Q ss_pred eeehhc-ccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHH
Q 031813 27 MFALTS-IKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVV 71 (152)
Q Consensus 27 ~~aL~~-i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L~~~l 71 (152)
.-.|.+ ++|||+.||..|+..+-=.|. -+ -|.-+.++..-+
T Consensus 127 ~~~Ll~~LpGIG~kTA~~iL~~a~g~p~-~~---VDt~V~Rv~~Rl 168 (287)
T 3n5n_X 127 AETLQQLLPGVGRYTAGAIASIAFGQAT-GV---VDGNVARVLCRV 168 (287)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHHHSCCCC-CC---CCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHhcCCCC-cc---ccHHHHHHHHHh
Confidence 345555 999999999999976422222 22 345666665555
No 90
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=40.64 E-value=17 Score=29.70 Aligned_cols=35 Identities=29% Similarity=0.350 Sum_probs=25.5
Q ss_pred cccchhhhhcCcccCCCeeheeehhcccccCHHHHHHHHHHcC
Q 031813 7 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKAD 49 (152)
Q Consensus 7 ~~~~~~vri~~~~l~~~k~v~~aL~~i~GIG~~~A~~Ic~~lg 49 (152)
++|-.+.=+.|+|--+ ..|+|||..+|..++++.|
T Consensus 221 ~q~id~~~L~G~D~~p--------~Gv~GIG~KtA~kLi~~~g 255 (346)
T 2izo_A 221 EQLIDIGILIGTDYNP--------DGIRGIGPERALKIIKKYG 255 (346)
T ss_dssp HHHHHHHHHHCCSSST--------TCSTTCCHHHHHHHHHHSS
T ss_pred HHHHHHHHHcCCCCCC--------CCCCCcCHHHHHHHHHHcC
Confidence 4555666667744322 1689999999999999987
No 91
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=39.58 E-value=22 Score=27.20 Aligned_cols=28 Identities=21% Similarity=0.381 Sum_probs=21.1
Q ss_pred ehhcccccCHHHHHHHHHHcCCCCCCCCCCCC
Q 031813 29 ALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60 (152)
Q Consensus 29 aL~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls 60 (152)
-++.+.|||..++..+ +.+||.. +++|-
T Consensus 185 pv~~l~giG~~~~~~L-~~~Gi~T---igdL~ 212 (221)
T 1im4_A 185 DIDEIPGIGSVLARRL-NELGIQK---LRDIL 212 (221)
T ss_dssp BGGGSTTCCHHHHHHH-HHTTCCB---TTC--
T ss_pred CcccccCCCHHHHHHH-HHcCCCc---HHHHH
Confidence 3788999999998875 8899976 55543
No 92
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=39.41 E-value=16 Score=29.77 Aligned_cols=34 Identities=24% Similarity=0.318 Sum_probs=24.5
Q ss_pred cccchhhhhcCcccCCCeeheeehhcccccCHHHHHHHHHHcC
Q 031813 7 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKAD 49 (152)
Q Consensus 7 ~~~~~~vri~~~~l~~~k~v~~aL~~i~GIG~~~A~~Ic~~lg 49 (152)
++|-.+.=+.|+|-- ..++|||..+|..++++.|
T Consensus 223 ~q~id~~~L~GsD~i---------pGv~GiG~KtA~kLl~~~g 256 (336)
T 1rxw_A 223 EQLIDIAILVGTDYN---------EGVKGVGVKKALNYIKTYG 256 (336)
T ss_dssp HHHHHHHHHHCBTTB---------CCCTTCCHHHHHHHHHHHS
T ss_pred HHHHHHHhhcCCCCC---------CCCCCcCHHHHHHHHHHcC
Confidence 355566666773322 1689999999999999876
No 93
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=38.80 E-value=19 Score=29.07 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=24.2
Q ss_pred cccchhhhhcCcccCCCeeheeehhcccccCHHHHHHHHHHcC
Q 031813 7 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKAD 49 (152)
Q Consensus 7 ~~~~~~vri~~~~l~~~k~v~~aL~~i~GIG~~~A~~Ic~~lg 49 (152)
++|-.+.=+.|+|--+ ..|+|||..+|..++++ |
T Consensus 212 ~q~id~~~L~GsD~~p--------~GvpGiG~ktA~kli~~-g 245 (326)
T 1a76_A 212 DDLIDIAIFMGTDYNP--------GGVKGIGFKRAYELVRS-G 245 (326)
T ss_dssp HHHHHHHHHHCCTTST--------TTTTTCCHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCCC--------CCCCCcCHHHHHHHHHc-C
Confidence 4455566666644322 17899999999999998 5
No 94
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=38.34 E-value=16 Score=29.68 Aligned_cols=18 Identities=17% Similarity=0.405 Sum_probs=16.2
Q ss_pred cccccCHHHHHHHHHHcC
Q 031813 32 SIKGIGRRLANIVCKKAD 49 (152)
Q Consensus 32 ~i~GIG~~~A~~Ic~~lg 49 (152)
.++|||+++|..++++.|
T Consensus 207 GVpGIG~KTA~kLL~~~g 224 (290)
T 1exn_A 207 GVEGIGAKRGYNIIREFG 224 (290)
T ss_dssp CCTTCCHHHHHHHHHHHC
T ss_pred CCCcCCHhHHHHHHHHcC
Confidence 489999999999998876
No 95
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=38.14 E-value=28 Score=28.75 Aligned_cols=49 Identities=20% Similarity=0.273 Sum_probs=38.3
Q ss_pred CeeheeehhcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhC
Q 031813 23 KQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 73 (152)
Q Consensus 23 ~k~v~~aL~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L~~~l~~ 73 (152)
.+.+.-.|.. -+-..++..+++.+|++++++..++++++.+.|...+++
T Consensus 320 ~~~l~~~l~~--~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~l~~~~~~ 368 (447)
T 2i0z_A 320 KKGIKNVLKG--YVPERYFLFLLEKNEIDGSEQAGQVSHEKIRALVKDFKE 368 (447)
T ss_dssp TSBHHHHTTT--SSCHHHHHHHHHHTTCCTTSBGGGSCHHHHHHHHHHHHH
T ss_pred hhhHHHhccc--cChHHHHHHHHHHcCCCcCCchhhCCHHHHHHHHHHhhC
Confidence 3444444433 245678889999999999999999999999999888876
No 96
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=37.30 E-value=21 Score=29.45 Aligned_cols=34 Identities=29% Similarity=0.401 Sum_probs=24.3
Q ss_pred cccchhhhhcCcccCCCeeheeehhcccccCHHHHHHHHHHcC
Q 031813 7 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKAD 49 (152)
Q Consensus 7 ~~~~~~vri~~~~l~~~k~v~~aL~~i~GIG~~~A~~Ic~~lg 49 (152)
++|-.+.=+.|+|- +..|+|||..+|..++++.+
T Consensus 213 ~q~id~~~L~G~D~---------~pgv~GiG~ktA~kli~~~~ 246 (352)
T 3qe9_Y 213 EKFRYMCILSGCDY---------LSSLRGIGLAKACKVLRLAN 246 (352)
T ss_dssp HHHHHHHHHHCCSS---------SCCCTTCCHHHHHHHHHHCC
T ss_pred HHHHHHHHhcCCCC---------CCCCCCeeHHHHHHHHHHhC
Confidence 44555555566332 23699999999999999985
No 97
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=37.01 E-value=11 Score=23.54 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031813 57 GELSAAELDNLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~ei~~L~~~l~~ 73 (152)
..||++|+..|..+|..
T Consensus 65 ~~ls~~ei~~l~~yl~~ 81 (90)
T 1cyi_A 65 DRLSEEEIQAVAEYVFK 81 (90)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHh
Confidence 46999999999999975
No 98
>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A*
Probab=36.83 E-value=25 Score=21.85 Aligned_cols=17 Identities=0% Similarity=0.143 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031813 57 GELSAAELDNLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~ei~~L~~~l~~ 73 (152)
..||++|+..|..+|..
T Consensus 63 ~~Lsd~ei~~l~~Yi~~ 79 (81)
T 1kx2_A 63 TDCTDEDYKAAIEFMSK 79 (81)
T ss_dssp SSCCHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 47999999999999875
No 99
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=36.75 E-value=12 Score=30.89 Aligned_cols=41 Identities=20% Similarity=0.371 Sum_probs=29.7
Q ss_pred ehhcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHH
Q 031813 29 ALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVV 71 (152)
Q Consensus 29 aL~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L~~~l 71 (152)
.|++++|||..+|..|.+.+.=..-..+.+|.+ ++. +.+.+
T Consensus 58 ~l~~lpGIG~~~A~kI~E~l~tG~~~~le~l~~-~~p-~l~ll 98 (335)
T 2bcq_A 58 EACSIPGIGKRMAEKIIEILESGHLRKLDHISE-SVP-VLELF 98 (335)
T ss_dssp HHHTSTTCCHHHHHHHHHHHHSSSCGGGGGCCT-THH-HHHHH
T ss_pred HHhcCCCccHHHHHHHHHHHHcCCchHHHHHhh-hhH-HHHHH
Confidence 489999999999999999877555556666643 333 44454
No 100
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1
Probab=36.52 E-value=22 Score=21.91 Aligned_cols=17 Identities=12% Similarity=0.196 Sum_probs=15.0
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031813 57 GELSAAELDNLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~ei~~L~~~l~~ 73 (152)
..||++|+..|..+|..
T Consensus 60 ~~Lsd~ei~~l~~yi~~ 76 (78)
T 1gks_A 60 GRADREDLVKAIEYMLS 76 (78)
T ss_dssp TTBCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 47999999999999875
No 101
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=36.42 E-value=21 Score=25.68 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=15.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhC
Q 031813 52 MNKRAGELSAAELDNLMVVVAN 73 (152)
Q Consensus 52 ~~~~~~~Ls~~ei~~L~~~l~~ 73 (152)
+....+.||++|.+.|.++|..
T Consensus 3 ~~~dls~LteeE~~~Il~Vl~R 24 (134)
T 1zbd_B 3 HMRKQEELTDEEKEIINRVIAR 24 (134)
T ss_dssp -----CCCCSSHHHHHHHHHHH
T ss_pred CCCCcccCCHHHHHHHHHHHhh
Confidence 4456788999999999999976
No 102
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=35.94 E-value=29 Score=28.05 Aligned_cols=37 Identities=19% Similarity=0.272 Sum_probs=28.4
Q ss_pred ehhcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHH
Q 031813 29 ALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDN 66 (152)
Q Consensus 29 aL~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~ 66 (152)
-++.+.|||..++..+ +.+||..-..+..++.+++.+
T Consensus 179 pv~~l~GiG~~~~~~L-~~~Gi~t~~dL~~~~~~~L~~ 215 (352)
T 1jx4_A 179 DIADVPGIGNITAEKL-KKLGINKLVDTLSIEFDKLKG 215 (352)
T ss_dssp BGGGSTTCCHHHHHHH-HTTTCCBGGGGGSSCHHHHHH
T ss_pred CCCcccccCHHHHHHH-HHcCCchHHHHHCCCHHHHHH
Confidence 3788999999998885 889998766666667665543
No 103
>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1
Probab=35.94 E-value=25 Score=22.19 Aligned_cols=16 Identities=19% Similarity=0.210 Sum_probs=14.4
Q ss_pred CCCHHHHHHHHHHHhC
Q 031813 58 ELSAAELDNLMVVVAN 73 (152)
Q Consensus 58 ~Ls~~ei~~L~~~l~~ 73 (152)
.|||+|+..|.++|.+
T Consensus 67 ~Lsd~ei~~v~~yi~~ 82 (83)
T 1cc5_A 67 DCSDDELKAAIGKMSG 82 (83)
T ss_dssp SCCHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHh
Confidence 6999999999999864
No 104
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=35.31 E-value=26 Score=21.32 Aligned_cols=17 Identities=12% Similarity=0.333 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031813 57 GELSAAELDNLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~ei~~L~~~l~~ 73 (152)
..||++|+..|.++|..
T Consensus 61 ~~Ls~~ei~~l~~yl~~ 77 (79)
T 2d0s_A 61 PQVAEADIEKIVRWVLT 77 (79)
T ss_dssp TTSCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 48999999999999865
No 105
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.26 E-value=15 Score=26.37 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHHHHHhCCCCccCCccccCccCCCCCC
Q 031813 57 GELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDG 93 (152)
Q Consensus 57 ~~Ls~~ei~~L~~~l~~~~~~~ip~w~~nr~~D~~sg 93 (152)
.+|++||+..|..+|.+ ..+..-..|.++|+.+|
T Consensus 10 ~~l~~ee~~el~~WL~~---l~Ls~~~rn~rRDFSdG 43 (127)
T 2ee7_A 10 SSVDEEALHQLYLWVDN---IPLSRPKRNLSRDFSDG 43 (127)
T ss_dssp SSCCHHHHHHHHHHHHH---SCCSCCSSCHHHHHTTS
T ss_pred CCCCHHHHHHHHHHHHc---CCCCCCCCchhhhccch
Confidence 57999999999999985 44432234556777655
No 106
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3
Probab=34.27 E-value=37 Score=27.79 Aligned_cols=48 Identities=17% Similarity=0.211 Sum_probs=34.0
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhCCCCccCCccccCccCCC
Q 031813 38 RRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDY 90 (152)
Q Consensus 38 ~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L~~~l~~~~~~~ip~w~~nr~~D~ 90 (152)
......+++.+|... ...||++|+..+.+..++ +|.-++|.+.+..++
T Consensus 211 ~~l~~~f~~~~~~~~---~~~lt~~e~~~i~~l~~~--ky~s~eW~~g~~P~f 258 (341)
T 1vqz_A 211 DLLLEYMKKEYPEMT---EYVFSEEELAEINRIKDT--KFGTWDWNYGKSPEF 258 (341)
T ss_dssp HHHHHHHHHHCTTCE---ECCCCHHHHHHHHHHHHH--TTTCHHHHTCCCCCC
T ss_pred HHHHHHHHHhcCCCC---CCCCCHHHHHHHHHHHHH--hcCCcccccCCCCCc
Confidence 345566777788751 278999999999998863 266678888654444
No 107
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*
Probab=32.05 E-value=33 Score=20.50 Aligned_cols=20 Identities=20% Similarity=0.209 Sum_probs=16.6
Q ss_pred CCCCCCCHHHHHHHHHHHhC
Q 031813 54 KRAGELSAAELDNLMVVVAN 73 (152)
Q Consensus 54 ~~~~~Ls~~ei~~L~~~l~~ 73 (152)
.....||++|+..|..+|..
T Consensus 50 Mp~~~ls~~ei~~l~~yl~~ 69 (71)
T 1c75_A 50 MPGGIAKGAEAEAVAAWLAE 69 (71)
T ss_dssp BCSCSSCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHh
Confidence 33378999999999999875
No 108
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=30.65 E-value=40 Score=22.80 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=20.2
Q ss_pred eehhcccccCHHHHHHHHHHcCCCC
Q 031813 28 FALTSIKGIGRRLANIVCKKADVDM 52 (152)
Q Consensus 28 ~aL~~i~GIG~~~A~~Ic~~lgi~~ 52 (152)
-.++.+.|||+..+..+-+ .|++.
T Consensus 18 K~V~evpGIG~~~~~~L~~-~Gf~k 41 (89)
T 1ci4_A 18 KPVGSLAGIGEVLGKKLEE-RGFDK 41 (89)
T ss_dssp CCGGGSTTCCHHHHHHHHH-TTCCS
T ss_pred CCcccCCCcCHHHHHHHHH-cCccH
Confidence 4578999999999999876 78775
No 109
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=30.49 E-value=15 Score=30.49 Aligned_cols=62 Identities=16% Similarity=0.145 Sum_probs=39.3
Q ss_pred ccchhhhhcCcccCCCeeheeehhcccccCHHHHHHHHH-HcCCCCCCCCCCCCHHHHHHHHHHHhC
Q 031813 8 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCK-KADVDMNKRAGELSAAELDNLMVVVAN 73 (152)
Q Consensus 8 ~~~~~vri~~~~l~~~k~v~~aL~~i~GIG~~~A~~Ic~-~lgi~~~~~~~~Ls~~ei~~L~~~l~~ 73 (152)
.|.++|+.+ ..-..|.+.-+|..+.+-........+. .+++ ++++.+||-+|+..|.+++.+
T Consensus 270 ~~~~vvr~~--F~qRRKtL~n~L~~l~~~~~~~l~~~l~~~~~i--~~R~e~Ls~e~f~~L~~~~~~ 332 (353)
T 1i4w_A 270 NWDYVTRHL--MILKRTPLNTVMDSLGHGGQQYFNSRITDKDLL--KKCPIDLTNDEFIYLTKLFME 332 (353)
T ss_dssp HHHHHHHHH--HTTTTSCTTTGGGGSSTTHHHHHTTTCCCCTTT--SSCGGGCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHH--HhhchHHHHHHHHhhccccHHHHHHHhhhhcCc--ccChhhCCHHHHHHHHHHHHh
Confidence 355666552 2245688888887654311111112222 5566 599999999999999999865
No 110
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=30.38 E-value=12 Score=32.78 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=17.3
Q ss_pred eehhcccccCHHHHHHHHHHcCCCCCC
Q 031813 28 FALTSIKGIGRRLANIVCKKADVDMNK 54 (152)
Q Consensus 28 ~aL~~i~GIG~~~A~~Ic~~lgi~~~~ 54 (152)
|-|..|.|||..+|..|..++|+.++.
T Consensus 44 y~l~~i~gigf~~aD~ia~~~g~~~~~ 70 (574)
T 3e1s_A 44 FTLTEVEGIGFLTADKLWQARGGALDD 70 (574)
T ss_dssp CGGGTSSSCCHHHHHTTC-------CC
T ss_pred cccCCcCCCCHHHHHHHHHHcCCCCCC
Confidence 566889999999999999999997643
No 111
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=30.38 E-value=35 Score=20.73 Aligned_cols=17 Identities=24% Similarity=0.192 Sum_probs=15.0
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031813 57 GELSAAELDNLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~ei~~L~~~l~~ 73 (152)
..||++|+..|..+|..
T Consensus 64 ~~ls~~ei~~l~~yl~~ 80 (82)
T 2exv_A 64 NAVSDDEAQTLAKWVLS 80 (82)
T ss_dssp CCCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 38999999999999975
No 112
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=30.22 E-value=10 Score=31.48 Aligned_cols=21 Identities=10% Similarity=0.222 Sum_probs=19.2
Q ss_pred ehhcccccCHHHHHHHHHHcC
Q 031813 29 ALTSIKGIGRRLANIVCKKAD 49 (152)
Q Consensus 29 aL~~i~GIG~~~A~~Ic~~lg 49 (152)
.|++++|||..+|..|.+.+.
T Consensus 62 ~l~~lpGIG~~~A~kI~E~l~ 82 (360)
T 2ihm_A 62 QLHGLPYFGEHSTRVIQELLE 82 (360)
T ss_dssp GGTTCTTCCHHHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHH
Confidence 489999999999999998876
No 113
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=29.74 E-value=42 Score=22.56 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=18.6
Q ss_pred ehhcccccCHHHHHHHHHHcCCCC
Q 031813 29 ALTSIKGIGRRLANIVCKKADVDM 52 (152)
Q Consensus 29 aL~~i~GIG~~~A~~Ic~~lgi~~ 52 (152)
-|+.+++||+.++..+ .++||+.
T Consensus 5 ~L~~LPNiG~~~e~~L-~~vGI~s 27 (93)
T 3bqs_A 5 NLSELPNIGKVLEQDL-IKAGIKT 27 (93)
T ss_dssp CGGGSTTCCHHHHHHH-HHTTCCS
T ss_pred HhhcCCCCCHHHHHHH-HHcCCCC
Confidence 4788999999988775 7888875
No 114
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*
Probab=29.38 E-value=28 Score=21.28 Aligned_cols=17 Identities=12% Similarity=0.186 Sum_probs=14.7
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031813 57 GELSAAELDNLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~ei~~L~~~l~~ 73 (152)
..||++|+..|..+|..
T Consensus 62 ~~Ls~~ei~~l~~Yl~s 78 (79)
T 1c53_A 62 KRYSDEEMKAMADYMSK 78 (79)
T ss_pred hhCCHHHHHHHHHHHHh
Confidence 46999999999999863
No 115
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=29.19 E-value=29 Score=28.15 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=27.4
Q ss_pred ehhcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHH
Q 031813 29 ALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDN 66 (152)
Q Consensus 29 aL~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~ 66 (152)
-++.+.|||..++..+ +.+||..-..+..++.+++.+
T Consensus 180 pv~~l~GiG~~~~~~L-~~~Gi~t~~dL~~~~~~~L~~ 216 (354)
T 3bq0_A 180 DIDEIPGIGSVLARRL-NELGIQKLRDILSKNYNELEK 216 (354)
T ss_dssp BSTTSTTCCHHHHHHH-TTTTCCBGGGGGGSCHHHHHH
T ss_pred CcccccCcCHHHHHHH-HHcCCccHHHHhcCCHHHHHH
Confidence 3688999999998885 789998755555556555543
No 116
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=29.18 E-value=28 Score=28.28 Aligned_cols=37 Identities=8% Similarity=0.138 Sum_probs=27.6
Q ss_pred ehhcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHH
Q 031813 29 ALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDN 66 (152)
Q Consensus 29 aL~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~ 66 (152)
-+..+.|||..++..+ ..+||..-..+..++.+++.+
T Consensus 179 pv~~l~GiG~~~~~~L-~~~GI~Ti~dL~~~~~~~L~~ 215 (356)
T 4dez_A 179 PPDALWGVGPKTTKKL-AAMGITTVADLAVTDPSVLTT 215 (356)
T ss_dssp CGGGSTTCCHHHHHHH-HHTTCCSHHHHHTSCHHHHHH
T ss_pred cHHHHcCCchhHHHHH-HHcCCCeecccccCCHHHHHH
Confidence 4678999999999876 789998755555556666543
No 117
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=29.17 E-value=35 Score=20.81 Aligned_cols=19 Identities=16% Similarity=0.183 Sum_probs=15.6
Q ss_pred CCCCCCHHHHHHHHHHHhC
Q 031813 55 RAGELSAAELDNLMVVVAN 73 (152)
Q Consensus 55 ~~~~Ls~~ei~~L~~~l~~ 73 (152)
....||++|+..|.++|..
T Consensus 60 p~~~Lsd~ei~~l~~yl~~ 78 (80)
T 1ayg_A 60 PPQNVTDAEAKQLAQWILS 78 (80)
T ss_dssp CCCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 3347999999999999864
No 118
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=29.14 E-value=26 Score=26.44 Aligned_cols=29 Identities=0% Similarity=-0.086 Sum_probs=25.8
Q ss_pred HHHcCCCCCCCCCCCCHHHHHHHHHHHhC
Q 031813 45 CKKADVDMNKRAGELSAAELDNLMVVVAN 73 (152)
Q Consensus 45 c~~lgi~~~~~~~~Ls~~ei~~L~~~l~~ 73 (152)
++.+++++..++.+|+.+|+.+|-+++..
T Consensus 212 ~~~~~~~~~~r~~~l~~~~f~~l~~~~~~ 240 (245)
T 1yub_A 212 HQAMKHAKVNNLSTITYEQVLSIFNSYLL 240 (245)
T ss_dssp HHHHHHTTCSCTTSCCSHHHHHHHHHHHH
T ss_pred HHHcCCCCCCChhhCCHHHHHHHHHHHHH
Confidence 57889999999999999999999988754
No 119
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=28.91 E-value=35 Score=20.71 Aligned_cols=17 Identities=35% Similarity=0.345 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031813 57 GELSAAELDNLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~ei~~L~~~l~~ 73 (152)
..||++|+..|..+|..
T Consensus 69 ~~ls~~ei~~l~~yl~s 85 (87)
T 2zxy_A 69 KGLSDAELKALADFILS 85 (87)
T ss_dssp GGCCHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHh
Confidence 47999999999999875
No 120
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=28.62 E-value=37 Score=20.61 Aligned_cols=17 Identities=18% Similarity=0.399 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031813 57 GELSAAELDNLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~ei~~L~~~l~~ 73 (152)
..||++|+..|..+|..
T Consensus 64 ~~ls~~ei~~l~~yl~~ 80 (86)
T 3ph2_B 64 GRLTDDQIAAVAAYVLD 80 (86)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 57999999999999864
No 121
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=28.43 E-value=12 Score=31.45 Aligned_cols=21 Identities=14% Similarity=0.271 Sum_probs=19.2
Q ss_pred ehhcccccCHHHHHHHHHHcC
Q 031813 29 ALTSIKGIGRRLANIVCKKAD 49 (152)
Q Consensus 29 aL~~i~GIG~~~A~~Ic~~lg 49 (152)
.|++++|||..+|..|.+.+.
T Consensus 81 ~l~~lpGIG~~ia~kI~E~l~ 101 (381)
T 1jms_A 81 DTEGIPCLGDKVKSIIEGIIE 101 (381)
T ss_dssp GGTTCSSCCHHHHHHHHHHHH
T ss_pred HHhcCCCCcHHHHHHHHHHHH
Confidence 489999999999999998876
No 122
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=28.21 E-value=53 Score=25.82 Aligned_cols=32 Identities=19% Similarity=0.166 Sum_probs=27.9
Q ss_pred HHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhC
Q 031813 41 ANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 73 (152)
Q Consensus 41 A~~Ic~~lgi~~~~~~~~Ls~~ei~~L~~~l~~ 73 (152)
...+++.+|+++ +++.+||.+|+.+|.+.+++
T Consensus 260 ~~~~l~~~~~~~-~R~e~l~~~~f~~l~~~~~~ 291 (299)
T 2h1r_A 260 CLDVLEHLDMCE-KRSINLDENDFLKLLLEFNK 291 (299)
T ss_dssp HHHHHHHTTCTT-CBGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCC-CChhhCCHHHHHHHHHHHHh
Confidence 456688899986 79999999999999999875
No 123
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A* 3r07_A
Probab=27.22 E-value=28 Score=27.04 Aligned_cols=42 Identities=12% Similarity=0.242 Sum_probs=30.4
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhCCCCccCCcccc
Q 031813 39 RLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFL 84 (152)
Q Consensus 39 ~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~L~~~l~~~~~~~ip~w~~ 84 (152)
.....+++.++++ ....+||++|++.+.++.++ +|.-++|.+
T Consensus 213 ~l~~~~~~~~~~~--~~~~~lt~~e~~~~~~l~~~--ky~~~~W~~ 254 (262)
T 2c8m_A 213 ALIRGFSETLHID--FREDTITEKEESLARELFDK--KYSTEEWNM 254 (262)
T ss_dssp HHHHHHHHHHTCE--EEECCCCHHHHHHHHHHHHH--TTTSHHHHH
T ss_pred HHHHHHHHHhCCC--ceecCCCHHHHHHHHHHHHh--hcCCccccC
Confidence 4455677777764 45688999999999998873 366667765
No 124
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=26.75 E-value=31 Score=28.23 Aligned_cols=21 Identities=14% Similarity=0.324 Sum_probs=19.1
Q ss_pred ehhcccccCHHHHHHHHHHcC
Q 031813 29 ALTSIKGIGRRLANIVCKKAD 49 (152)
Q Consensus 29 aL~~i~GIG~~~A~~Ic~~lg 49 (152)
.|++++|||..+|..|.+.+.
T Consensus 58 ~l~~LpGIG~~~A~kI~E~l~ 78 (335)
T 2fmp_A 58 EAKKLPGVGTKIAEKIDEFLA 78 (335)
T ss_dssp HHHTSTTCCHHHHHHHHHHHH
T ss_pred HHhcCCCCcHHHHHHHHHHHH
Confidence 489999999999999998876
No 125
>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1
Probab=26.62 E-value=42 Score=20.84 Aligned_cols=17 Identities=12% Similarity=0.259 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031813 57 GELSAAELDNLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~ei~~L~~~l~~ 73 (152)
+.||++|+..|..+|..
T Consensus 68 ~~ls~~ei~~l~~yl~~ 84 (91)
T 1ls9_A 68 DRLDEDDIEAVSNYVYD 84 (91)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHH
Confidence 47999999999999975
No 126
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1
Probab=26.58 E-value=42 Score=20.49 Aligned_cols=16 Identities=31% Similarity=0.380 Sum_probs=14.6
Q ss_pred CCCHHHHHHHHHHHhC
Q 031813 58 ELSAAELDNLMVVVAN 73 (152)
Q Consensus 58 ~Ls~~ei~~L~~~l~~ 73 (152)
.||++|+..|..+|..
T Consensus 66 ~ls~~ei~~l~~yl~~ 81 (88)
T 3dmi_A 66 RLSDEEIANVAAYVLA 81 (88)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6999999999999975
No 127
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=26.34 E-value=43 Score=20.57 Aligned_cols=17 Identities=24% Similarity=0.388 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031813 57 GELSAAELDNLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~ei~~L~~~l~~ 73 (152)
..||++|+..|..+|..
T Consensus 66 ~~ls~~ei~~l~~yl~~ 82 (89)
T 1c6r_A 66 GTLDDDEIAAVAAYVYD 82 (89)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHH
Confidence 46999999999999975
No 128
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=26.28 E-value=31 Score=21.12 Aligned_cols=17 Identities=18% Similarity=0.112 Sum_probs=14.8
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031813 57 GELSAAELDNLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~ei~~L~~~l~~ 73 (152)
..||++|+..|.++|..
T Consensus 63 ~~Ls~~ei~~l~~yl~~ 79 (81)
T 1a56_A 63 VNVSDADAKALADWILT 79 (81)
T ss_dssp CSSSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 48999999999999863
No 129
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=26.01 E-value=20 Score=32.45 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=29.2
Q ss_pred cccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHH
Q 031813 32 SIKGIGRRLANIVCKKADVDMNKRAGELSAAELD 65 (152)
Q Consensus 32 ~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~ 65 (152)
.|.|+|..++.++.+..++..-.-+-+|+.+++.
T Consensus 445 dI~GLG~k~i~~L~~~g~I~~~~DL~~L~~e~L~ 478 (667)
T 1dgs_A 445 DIEGLGEKLIERLLEKGLVRDVADLYHLRKEDLL 478 (667)
T ss_dssp CCTTCCHHHHHHHHHTTSCSSGGGGGGGCCHHHH
T ss_pred CcCcCCHHHHHHHHHcCCCCCHHHHHhcCHHHHh
Confidence 6999999999999999998887788888866653
No 130
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1
Probab=26.01 E-value=45 Score=20.67 Aligned_cols=17 Identities=35% Similarity=0.407 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031813 57 GELSAAELDNLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~ei~~L~~~l~~ 73 (152)
..||++|+..|..+|..
T Consensus 65 ~~ls~~ei~~l~~yl~~ 81 (87)
T 1cno_A 65 TALSDADIANLAAYYAS 81 (87)
T ss_dssp TTCCHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHh
Confidence 47999999999999975
No 131
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Probab=25.98 E-value=40 Score=20.68 Aligned_cols=17 Identities=35% Similarity=0.630 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031813 57 GELSAAELDNLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~ei~~L~~~l~~ 73 (152)
..||++|+..|..+|..
T Consensus 70 ~~ls~~ei~~l~~yl~~ 86 (93)
T 3dr0_A 70 GRLSDADIANVAAYIAD 86 (93)
T ss_dssp TTBCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 57999999999999965
No 132
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=25.87 E-value=26 Score=29.50 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=26.5
Q ss_pred hhcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHH
Q 031813 30 LTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDN 66 (152)
Q Consensus 30 L~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~ 66 (152)
++++.|||..++..+ +.+||..-..+..++.+++.+
T Consensus 236 v~~l~GIG~~t~~~L-~~lGI~TigdLa~~~~~~L~~ 271 (420)
T 3osn_A 236 IKEIPGIGYKTAKCL-EALGINSVRDLQTFSPKILEK 271 (420)
T ss_dssp GGGSTTCCHHHHHHH-HHTTCCSHHHHHHSCHHHHHH
T ss_pred HHHccCCCHHHHHHH-HHhCCCcHHHHhhCCHHHHHH
Confidence 788999999999887 679997644444456665543
No 133
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=25.79 E-value=33 Score=25.80 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=17.7
Q ss_pred ehhcccccCHHHHHHHHHHcC
Q 031813 29 ALTSIKGIGRRLANIVCKKAD 49 (152)
Q Consensus 29 aL~~i~GIG~~~A~~Ic~~lg 49 (152)
.|..+.|||..+|..|.+.+.
T Consensus 195 ~L~~v~GiG~~~a~~i~~~~~ 215 (219)
T 2bgw_A 195 EISKVEGIGEKRAEEIKKILM 215 (219)
T ss_dssp HHHHSTTCCHHHHHHHHHHHH
T ss_pred HHhhCCCCCHHHHHHHHHHHh
Confidence 378899999999999987764
No 134
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=25.51 E-value=46 Score=20.11 Aligned_cols=16 Identities=13% Similarity=0.239 Sum_probs=14.6
Q ss_pred CCCHHHHHHHHHHHhC
Q 031813 58 ELSAAELDNLMVVVAN 73 (152)
Q Consensus 58 ~Ls~~ei~~L~~~l~~ 73 (152)
.||++|+..|..+|..
T Consensus 64 ~ls~~ei~~l~~yl~~ 79 (85)
T 1gdv_A 64 RLVDEDIEDAANYVLS 79 (85)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7999999999999864
No 135
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=25.12 E-value=47 Score=20.33 Aligned_cols=17 Identities=24% Similarity=0.540 Sum_probs=14.8
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031813 57 GELSAAELDNLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~ei~~L~~~l~~ 73 (152)
+.||++|+..|..+|..
T Consensus 67 ~~ls~~ei~~l~~yl~~ 83 (89)
T 1f1f_A 67 GRLSPLQIEDVAAYVVD 83 (89)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 35999999999999864
No 136
>3o0r_C Nitric oxide reductase subunit C; oxidoreductase, electron transport, heme, iron, membrane, CY membrane; HET: HEM HEC; 2.70A {Pseudomonas aeruginosa}
Probab=24.74 E-value=40 Score=23.14 Aligned_cols=20 Identities=20% Similarity=0.154 Sum_probs=16.0
Q ss_pred CCCCCCCHHHHHHHHHHHhC
Q 031813 54 KRAGELSAAELDNLMVVVAN 73 (152)
Q Consensus 54 ~~~~~Ls~~ei~~L~~~l~~ 73 (152)
...-.||++|+..|..+|..
T Consensus 112 Mp~~~Ls~~ei~~l~ayl~~ 131 (146)
T 3o0r_C 112 MPQFHLSEGQVDDLAEFLKW 131 (146)
T ss_dssp CCCCCCCHHHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHHHH
Confidence 33345999999999999964
No 137
>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens}
Probab=24.35 E-value=47 Score=20.37 Aligned_cols=16 Identities=13% Similarity=0.038 Sum_probs=14.4
Q ss_pred CCCHHHHHHHHHHHhC
Q 031813 58 ELSAAELDNLMVVVAN 73 (152)
Q Consensus 58 ~Ls~~ei~~L~~~l~~ 73 (152)
.||++|+..|..+|..
T Consensus 67 ~ls~~ei~~l~~yi~~ 82 (85)
T 3cu4_A 67 MIPPADALKIGEYVVA 82 (85)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6999999999999864
No 138
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=24.27 E-value=29 Score=27.85 Aligned_cols=44 Identities=20% Similarity=0.347 Sum_probs=28.4
Q ss_pred ehhcccccCHHHHHHHHHHcCCCCCCCCCC-----------CCHHHHHHHHHHHhC
Q 031813 29 ALTSIKGIGRRLANIVCKKADVDMNKRAGE-----------LSAAELDNLMVVVAN 73 (152)
Q Consensus 29 aL~~i~GIG~~~A~~Ic~~lgi~~~~~~~~-----------Ls~~ei~~L~~~l~~ 73 (152)
-|..++|||...+.. |...|+..-..+.+ +++.+...+.+++++
T Consensus 158 pL~Qlp~i~~~~~~~-l~~~~i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~~~ 212 (328)
T 3im1_A 158 PLRQIPHFNNKILEK-CKEINVETVYDIMALEDEERDEILTLTDSQLAQVAAFVNN 212 (328)
T ss_dssp GGGGSTTCCHHHHHH-HHHTTCCSHHHHHHSCHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred ceeCCCCCCHHHHHH-HHhCCCCCHHHHhcCCHHHHHhHhCCCHHHHHHHHHHHHh
Confidence 478999999999887 45677754333333 455555555666655
No 139
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=23.89 E-value=46 Score=22.58 Aligned_cols=24 Identities=4% Similarity=0.141 Sum_probs=20.4
Q ss_pred ehhcccccCHHHHHHHHHHcCCCC
Q 031813 29 ALTSIKGIGRRLANIVCKKADVDM 52 (152)
Q Consensus 29 aL~~i~GIG~~~A~~Ic~~lgi~~ 52 (152)
.|.+--|+...+..++|+++|++.
T Consensus 44 elA~~~~vS~aTv~Rf~kklG~~g 67 (111)
T 2o3f_A 44 EISALANSSDAAVIRLCXSLGLKG 67 (111)
T ss_dssp HHHHHTTCCHHHHHHHHHHTTCSS
T ss_pred HHHHHHCCCHHHHHHHHHHcCCCC
Confidence 456677999999999999999874
No 140
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=23.43 E-value=51 Score=19.85 Aligned_cols=16 Identities=19% Similarity=0.102 Sum_probs=14.4
Q ss_pred CCCHHHHHHHHHHHhC
Q 031813 58 ELSAAELDNLMVVVAN 73 (152)
Q Consensus 58 ~Ls~~ei~~L~~~l~~ 73 (152)
.||++|+..|..+|..
T Consensus 65 ~ls~~ei~~l~~yl~~ 80 (82)
T 1cch_A 65 PVTEEEAKILAEWVLS 80 (82)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 7999999999999864
No 141
>3bc1_B Synaptotagmin-like protein 2; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Homo sapiens}
Probab=23.38 E-value=65 Score=20.07 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHHHhCCCCccCCccccCccCCCCCCchhhhhhhhHHHHHHhhhhhhhc
Q 031813 57 GELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKK 116 (152)
Q Consensus 57 ~~Ls~~ei~~L~~~l~~~~~~~ip~w~~nr~~D~~sg~~~~lie~~L~~~~~~~I~rl~~ 116 (152)
+.|+++|-+.|.++|.. ...|+..-..-|.+|+.
T Consensus 1 ~~l~e~E~~~IL~VL~R--------------------------D~~lr~~ee~RIrkLk~ 34 (59)
T 3bc1_B 1 GSPEFEEQEAIMKVLQR--------------------------DAALKRAEEERVRHLPE 34 (59)
T ss_dssp CCHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHGGG
T ss_pred CCCCHHHHHHHHHHHhh--------------------------HHHHhhChHHHHHHHHH
Confidence 35788899999998864 46676666667766654
No 142
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=23.35 E-value=38 Score=30.65 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=30.4
Q ss_pred hcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHHH
Q 031813 31 TSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDN 66 (152)
Q Consensus 31 ~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~~ 66 (152)
-.|.|+|..++.++.+...|..-.-+..|+.+++..
T Consensus 449 ldI~GLG~k~i~~L~~~g~I~~~aDL~~L~~~~L~~ 484 (671)
T 2owo_A 449 MDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTG 484 (671)
T ss_dssp TCCTTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHT
T ss_pred cCCCCCCHHHHHHHHHcCCCCCHHHHHhhCHHHhhc
Confidence 589999999999999999988877788888776543
No 143
>3doa_A Fibrinogen binding protein; structural genomics, MCSG., protein structure initiative, midwest center for structural genomics; 2.81A {Staphylococcus aureus subsp}
Probab=23.28 E-value=29 Score=27.70 Aligned_cols=26 Identities=15% Similarity=0.278 Sum_probs=20.5
Q ss_pred heeeh-hcccccCHHHHHHH-HHHcCCC
Q 031813 26 IMFAL-TSIKGIGRRLANIV-CKKADVD 51 (152)
Q Consensus 26 v~~aL-~~i~GIG~~~A~~I-c~~lgi~ 51 (152)
+..+| +.+.|+|+..|..| |.++|.+
T Consensus 190 l~~~l~~~~~G~s~~la~El~~~ra~~~ 217 (288)
T 3doa_A 190 IAKQLLNQFEGFSPLITNEIVSRRQFMT 217 (288)
T ss_dssp HHHHHHHHBTTCCHHHHHHHHTTSSSCS
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHcCCc
Confidence 44455 55669999999999 9999853
No 144
>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*
Probab=23.13 E-value=54 Score=20.11 Aligned_cols=17 Identities=6% Similarity=0.130 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031813 57 GELSAAELDNLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~ei~~L~~~l~~ 73 (152)
..||++|+..|..+|..
T Consensus 56 ~~ls~~ei~~l~~yl~~ 72 (80)
T 1wve_C 56 SYVDDESLTQVAEYLSS 72 (80)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 47999999999999975
No 145
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=22.79 E-value=34 Score=22.07 Aligned_cols=15 Identities=7% Similarity=0.359 Sum_probs=11.3
Q ss_pred CCCHHHHHHHHHHHh
Q 031813 58 ELSAAELDNLMVVVA 72 (152)
Q Consensus 58 ~Ls~~ei~~L~~~l~ 72 (152)
.+|.+|++.|+.+..
T Consensus 23 ~ft~~Ql~~Le~F~~ 37 (80)
T 1wh7_A 23 KFTAEQKEKMLAFAE 37 (80)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 478899998885544
No 146
>2zzs_A Cytochrome C554; C-type cytochrome, electron transport; HET: HEC; 1.80A {Vibrio parahaemolyticus}
Probab=22.39 E-value=56 Score=20.78 Aligned_cols=17 Identities=24% Similarity=0.304 Sum_probs=14.8
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031813 57 GELSAAELDNLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~ei~~L~~~l~~ 73 (152)
..||++|+..|.++|..
T Consensus 85 ~~ls~~ei~~l~~yl~~ 101 (103)
T 2zzs_A 85 SLLSDDDIANLAAYYSS 101 (103)
T ss_dssp TTCCHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHh
Confidence 47999999999999864
No 147
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=22.18 E-value=94 Score=20.68 Aligned_cols=22 Identities=5% Similarity=-0.031 Sum_probs=16.4
Q ss_pred ccccCHHHHHHHHHHcCCCCCC
Q 031813 33 IKGIGRRLANIVCKKADVDMNK 54 (152)
Q Consensus 33 i~GIG~~~A~~Ic~~lgi~~~~ 54 (152)
-..+...+...||+.+|++++.
T Consensus 49 ~~~p~~~~l~~ia~~l~v~~~~ 70 (126)
T 3ivp_A 49 GQHPSLQVLYDLVSLLNVSVDE 70 (126)
T ss_dssp CCCCCHHHHHHHHHHHTCCSHH
T ss_pred CCCCCHHHHHHHHHHHCcCHHH
Confidence 3456777888888888888754
No 148
>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD phasing, dissimilatory metal reduction, electron transport; HET: HEM; 1.86A {Geobacter sulfurreducens} SCOP: a.3.1.0
Probab=21.97 E-value=55 Score=21.13 Aligned_cols=16 Identities=13% Similarity=0.038 Sum_probs=14.4
Q ss_pred CCCHHHHHHHHHHHhC
Q 031813 58 ELSAAELDNLMVVVAN 73 (152)
Q Consensus 58 ~Ls~~ei~~L~~~l~~ 73 (152)
.||++|+..|..+|.+
T Consensus 81 ~Lsd~ei~~l~~Yi~~ 96 (99)
T 3dp5_A 81 MIPPADALKIGEYVVA 96 (99)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5999999999999864
No 149
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A*
Probab=21.93 E-value=26 Score=30.47 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=21.4
Q ss_pred eehhcccccCHHHHHHHHHHcCCCC
Q 031813 28 FALTSIKGIGRRLANIVCKKADVDM 52 (152)
Q Consensus 28 ~aL~~i~GIG~~~A~~Ic~~lgi~~ 52 (152)
.-+++|.|||..++..+.+.+||++
T Consensus 307 lPV~~l~GIG~~t~~~L~~llGI~~ 331 (520)
T 3mfi_A 307 FEITSFWTLGGVLGKELIDVLDLPH 331 (520)
T ss_dssp CCGGGSTTCSSHHHHHHHHHTTCCS
T ss_pred CcHHHhcCCCHHHHHHHHHhcCCCc
Confidence 4577899999999999998889953
No 150
>3exc_X Uncharacterized protein; ferredoxin fold, double split beta-alpha-beta fold, dimer, C aspartate, RNA'ASE, hydrolase; 2.25A {Sulfolobus solfataricus} SCOP: d.58.58.0
Probab=21.75 E-value=23 Score=23.69 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=34.2
Q ss_pred cchhhhhcCcccCCCeeheeehhcccccCHHHHHHHHHHcCC---CCCCCCCCCCHHHHHHHHHHHhC
Q 031813 9 FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADV---DMNKRAGELSAAELDNLMVVVAN 73 (152)
Q Consensus 9 ~~~~vri~~~~l~~~k~v~~aL~~i~GIG~~~A~~Ic~~lgi---~~~~~~~~Ls~~ei~~L~~~l~~ 73 (152)
|+.|..|.--||++++. ......+|+..|+ -.+---++||+.++..|...|.+
T Consensus 1 ~~~M~vlV~YDI~~~kr------------r~kv~k~l~~yGl~rvQ~SVFe~~lt~~~~~~L~~~L~~ 56 (91)
T 3exc_X 1 FQGMKLLVVYDVSDDSK------------RNKLANNLKKLGLERIQRSAFEGDMDSQRMKDLVRVVKL 56 (91)
T ss_dssp ---CEEEEEEECCSHHH------------HHHHHHHHHHTTCEEEETTEEEEECC--CHHHHHHHHHH
T ss_pred CCceEEEEEEeCCCchH------------HHHHHHHHHHhCCccceeeEEEEECCHHHHHHHHHHHHH
Confidence 45666666667776542 2667788999986 34455678899999988888875
No 151
>3fgx_A Rbstp2171; structural genomics, PSI-2, Pro structure initiative, midwest center for structural genomic structural genomics; 2.90A {Bacillus stearothermophilus}
Probab=21.49 E-value=34 Score=24.23 Aligned_cols=46 Identities=11% Similarity=0.046 Sum_probs=33.7
Q ss_pred hhcCcccCCCeeh-eeehhcccccCHHHHHHHHHHcCCCCCCCCCCC
Q 031813 14 RVLNTNVDGKQKI-MFALTSIKGIGRRLANIVCKKADVDMNKRAGEL 59 (152)
Q Consensus 14 ri~~~~l~~~k~v-~~aL~~i~GIG~~~A~~Ic~~lgi~~~~~~~~L 59 (152)
+++.+-.++.+.- .-.|...+|+....|..|.+.+|++....++.|
T Consensus 68 flmd~V~~E~KeaL~ellEE~PGaalqia~~Li~~lGls~~~~lkkl 114 (114)
T 3fgx_A 68 LTFSCIVPEQEEELRQAAEEFPGLTFNTASRLMEIVGASAATSLKKL 114 (114)
T ss_dssp HHHTTBCGGGHHHHHHHHHHSTTHHHHHHHHHHHHHTCCCCCCCC--
T ss_pred HHHHhcCcccHHHHHHHHHHCccHHHHHHHHHHHHhCCcchhhhhcC
Confidence 4555556665554 445568999999999999999999987766543
No 152
>2ce0_A Cytochrome C6; chloroplast, electron transport, heme, iron, thylakoid, photosynthesis, metal-binding, electron transfer; HET: HEC; 1.24A {Arabidopsis thaliana} PDB: 2ce1_A* 2dge_A* 2v07_A*
Probab=21.42 E-value=55 Score=20.74 Aligned_cols=17 Identities=24% Similarity=0.159 Sum_probs=15.4
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031813 57 GELSAAELDNLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~ei~~L~~~l~~ 73 (152)
..||++|+..|..+|..
T Consensus 77 ~~ls~~ei~~l~~yl~~ 93 (105)
T 2ce0_A 77 PRLQDEEIKLLAEFVKF 93 (105)
T ss_dssp CCBCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 57999999999999975
No 153
>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans}
Probab=20.92 E-value=62 Score=19.86 Aligned_cols=16 Identities=13% Similarity=0.158 Sum_probs=14.4
Q ss_pred CCCHHHHHHHHHHHhC
Q 031813 58 ELSAAELDNLMVVVAN 73 (152)
Q Consensus 58 ~Ls~~ei~~L~~~l~~ 73 (152)
.||++|+..|..+|..
T Consensus 69 ~ls~~ei~~l~~yl~~ 84 (87)
T 2zon_G 69 AADEATLRAAVAYMMD 84 (87)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7999999999999864
No 154
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=20.38 E-value=1.1e+02 Score=23.50 Aligned_cols=33 Identities=24% Similarity=0.264 Sum_probs=23.8
Q ss_pred hcccccCHHHHHHHHHHcCCCCCCCCCCCCHHHHH
Q 031813 31 TSIKGIGRRLANIVCKKADVDMNKRAGELSAAELD 65 (152)
Q Consensus 31 ~~i~GIG~~~A~~Ic~~lgi~~~~~~~~Ls~~ei~ 65 (152)
..++-||+.||..+ +.+|+.+ .-+..-+-+.+-
T Consensus 115 ~~i~aVG~~Ta~aL-~~~G~~~-~~p~~~~ae~L~ 147 (286)
T 1jr2_A 115 KSVYVVGNATASLV-SKIGLDT-EGETCGNAEKLA 147 (286)
T ss_dssp SEEEECSHHHHHHH-HHTTCCC-SCCSCSSHHHHH
T ss_pred CcEEEECHHHHHHH-HHcCCCc-CCCCccCHHHHH
Confidence 47999999999988 7899987 334444444443
No 155
>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}
Probab=20.16 E-value=64 Score=20.11 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=14.9
Q ss_pred CCCCHHHHHHHHHHHhC
Q 031813 57 GELSAAELDNLMVVVAN 73 (152)
Q Consensus 57 ~~Ls~~ei~~L~~~l~~ 73 (152)
..||++|+..|..+|..
T Consensus 81 ~~ls~~ei~~l~~yl~s 97 (99)
T 1w2l_A 81 ASLSEREVAALIEFIKQ 97 (99)
T ss_dssp GGCCHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 46999999999999975
Done!