BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031814
         (152 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2B3O|A Chain A, Crystal Structure Of Human Tyrosine Phosphatase Shp-1
          Length = 532

 Score = 27.3 bits (59), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 69  SSGLFPTLSASGKTKSKNPYD-EKRLLEQNKRMQKENSAPEGF 110
           +SG F  L         N  D E R+LE NK+ + E++A  GF
Sbjct: 202 ASGAFVYLRQPYYATRVNAADIENRVLELNKKQESEDTAKAGF 244


>pdb|1XFR|A Chain A, Solution Structure Of The Bombyx Mori Pheromone-Binding
           Protein Fragment Bmpbp(1-128) At Ph 6.5
          Length = 128

 Score = 26.9 bits (58), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 91  KRLLEQNKRMQKENSAPEGFPNFIREGFEVK 121
           K L E  K M   ++  E F NF +EG+E+K
Sbjct: 14  KALDECKKEMTLTDAINEDFYNFWKEGYEIK 44


>pdb|2P70|A Chain A, Bombyx Mori Pheromone Binding Protein Bound To Bell Pepper
           Odorant
 pdb|2P71|A Chain A, Bombyx Mori Pheromone Binding Protein Bound To
           Iodohexadecane
          Length = 132

 Score = 26.9 bits (58), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 91  KRLLEQNKRMQKENSAPEGFPNFIREGFEVK 121
           K L E  K M   ++  E F NF +EG+E+K
Sbjct: 14  KALDECKKEMTLTDAINEDFYNFWKEGYEIK 44


>pdb|3PS5|A Chain A, Crystal Structure Of The Full-Length Human Protein
           Tyrosine Phosphatase Shp-1
          Length = 595

 Score = 26.9 bits (58), Expect = 5.1,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 69  SSGLFPTLSASGKTKSKNPYD-EKRLLEQNKRMQKENSAPEGF 110
           +SG F  L         N  D E R+LE NK+ + E++A  GF
Sbjct: 202 ASGAFVYLRQPYYATRVNAADIENRVLELNKKQESEDTAKAGF 244


>pdb|2FJY|A Chain A, Crystal Structure Of B-Form Bombyx Mori Pheromone Binding
           Protein
 pdb|2FJY|B Chain B, Crystal Structure Of B-Form Bombyx Mori Pheromone Binding
           Protein
          Length = 142

 Score = 26.6 bits (57), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 91  KRLLEQNKRMQKENSAPEGFPNFIREGFEVK 121
           K L E  K M   ++  E F NF +EG+E+K
Sbjct: 14  KALDECKKEMTLTDAINEDFYNFWKEGYEIK 44


>pdb|1DQE|A Chain A, Bombyx Mori Pheromone Binding Protein
 pdb|1DQE|B Chain B, Bombyx Mori Pheromone Binding Protein
          Length = 137

 Score = 26.6 bits (57), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 91  KRLLEQNKRMQKENSAPEGFPNFIREGFEVK 121
           K L E  K M   ++  E F NF +EG+E+K
Sbjct: 14  KALDECKKEMTLTDAINEDFYNFWKEGYEIK 44


>pdb|1GM0|A Chain A, A Form Of The Pheromone-Binding Protein From Bombyx Mori
 pdb|1LS8|A Chain A, Nmr Structure Of The Unliganded Bombyx Mori Pheromone-
           Binding Protein At Physiological Ph
          Length = 142

 Score = 26.6 bits (57), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 91  KRLLEQNKRMQKENSAPEGFPNFIREGFEVK 121
           K L E  K M   ++  E F NF +EG+E+K
Sbjct: 14  KALDECKKEMTLTDAINEDFYNFWKEGYEIK 44


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,393,169
Number of Sequences: 62578
Number of extensions: 175791
Number of successful extensions: 289
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 281
Number of HSP's gapped (non-prelim): 11
length of query: 152
length of database: 14,973,337
effective HSP length: 90
effective length of query: 62
effective length of database: 9,341,317
effective search space: 579161654
effective search space used: 579161654
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)