BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031814
         (152 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q0WRJ7|FK202_ARATH Peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic
           OS=Arabidopsis thaliana GN=FKBP20-2 PE=1 SV=1
          Length = 242

 Score =  118 bits (295), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/112 (61%), Positives = 85/112 (75%), Gaps = 8/112 (7%)

Query: 39  VRCSSSHNLKDNGFHCKVKLKRRVVPFLLFSSG--LFPTLSASGKTKSKNPYDEKRLLEQ 96
           V CS S   KD    C   L RR + ++L +S   L P LS+S KTKSK+PYDE+RLLEQ
Sbjct: 30  VCCSLSEEPKD---QC---LSRRSLVYVLVASPCLLLPALSSSAKTKSKSPYDERRLLEQ 83

Query: 97  NKRMQKENSAPEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGNFP 148
           NKR+Q+EN+AP+ FPNF+REGFEVKV+ S+NY K DSGLIYRDF VG+G+FP
Sbjct: 84  NKRIQRENNAPDEFPNFVREGFEVKVLASDNYIKADSGLIYRDFNVGQGDFP 135


>sp|Q7MB17|TRUA_PHOLL tRNA pseudouridine synthase A OS=Photorhabdus luminescens subsp.
           laumondii (strain TT01) GN=truA PE=3 SV=2
          Length = 264

 Score = 35.0 bits (79), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 28/57 (49%)

Query: 49  DNGFHCKVKLKRRVVPFLLFSSGLFPTLSASGKTKSKNPYDEKRLLEQNKRMQKENS 105
           D GFH +     R   +++F+    P + A+G T    P DEKR+ +  + +  EN 
Sbjct: 95  DEGFHARFSATARRYRYIIFNHRYRPAVLANGVTHFHYPLDEKRMHQAAQCILGEND 151


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.136    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,763,027
Number of Sequences: 539616
Number of extensions: 2432385
Number of successful extensions: 5398
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 5393
Number of HSP's gapped (non-prelim): 13
length of query: 152
length of database: 191,569,459
effective HSP length: 107
effective length of query: 45
effective length of database: 133,830,547
effective search space: 6022374615
effective search space used: 6022374615
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)