Query 031814
Match_columns 152
No_of_seqs 23 out of 25
Neff 2.0
Searched_HMMs 29240
Date Mon Mar 25 08:48:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031814.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031814hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jvw_A Macrophage infectivity 87.7 0.34 1.2E-05 36.3 2.8 24 126-149 30-54 (167)
2 1fd9_A Protein (macrophage inf 86.3 0.45 1.5E-05 37.1 2.9 26 125-150 98-123 (213)
3 3oe2_A Peptidyl-prolyl CIS-tra 83.6 0.57 2E-05 37.1 2.4 26 125-150 109-134 (219)
4 2y78_A Peptidyl-prolyl CIS-tra 83.0 0.89 3E-05 32.3 3.0 25 125-149 20-44 (133)
5 3uf8_A Ubiquitin-like protein 75.4 1.8 6.2E-05 33.1 2.8 24 126-149 97-120 (209)
6 1q6h_A FKBP-type peptidyl-prol 75.0 1.9 6.6E-05 33.8 2.9 25 126-150 114-138 (224)
7 2f4e_A ATFKBP42; FKBP-like, al 70.7 2.7 9.3E-05 31.4 2.7 24 126-149 42-65 (180)
8 2jwx_A FKBP38NTD, FK506-bindin 61.5 5.4 0.00019 29.5 2.8 42 108-149 17-61 (157)
9 2bps_A YUKD protein; ubiquitin 58.9 2.9 0.0001 28.9 0.8 32 114-147 46-77 (81)
10 3b7x_A FK506-binding protein 6 54.4 3.8 0.00013 28.8 0.8 21 129-149 22-42 (134)
11 2if4_A ATFKBP42; FKBP-like, al 53.1 8.9 0.00031 29.3 2.8 24 127-150 43-66 (338)
12 3o5e_A Peptidyl-prolyl CIS-tra 52.3 8 0.00027 27.5 2.3 39 104-149 13-52 (144)
13 2p62_A Hypothetical protein PH 40.5 12 0.00042 31.0 1.9 29 99-128 26-68 (241)
14 2xi5_A RNA polymerase L, L-pro 38.1 12 0.00041 30.2 1.4 31 116-146 70-100 (184)
15 3hr4_A Nitric oxide synthase, 30.0 23 0.0008 27.6 1.9 36 116-151 67-106 (219)
16 1q1c_A FK506-binding protein 4 29.4 28 0.00096 27.5 2.3 19 131-149 49-68 (280)
17 3ot1_A 4-methyl-5(B-hydroxyeth 28.2 43 0.0015 24.4 2.9 23 115-137 34-58 (208)
18 4e08_A DJ-1 beta; flavodoxin-l 27.4 47 0.0016 23.6 3.0 23 115-137 30-54 (190)
19 3l18_A Intracellular protease 26.2 52 0.0018 22.6 2.9 21 115-135 27-48 (168)
20 1q1c_A FK506-binding protein 4 26.1 40 0.0014 26.6 2.6 19 131-149 166-185 (280)
21 2dco_A S1P4 first extracellula 25.0 13 0.00045 23.0 -0.3 13 105-119 21-33 (34)
22 2ab0_A YAJL; DJ-1/THIJ superfa 23.7 60 0.002 23.5 3.0 23 115-137 27-53 (205)
23 3jxv_A 70 kDa peptidyl-prolyl 23.2 53 0.0018 26.3 2.9 34 116-149 225-261 (356)
24 4hcj_A THIJ/PFPI domain protei 22.8 61 0.0021 23.7 2.9 25 113-137 31-56 (177)
25 3cne_A Putative protease I; st 21.9 69 0.0024 22.2 2.9 23 115-137 27-51 (175)
26 2rk3_A Protein DJ-1; parkinson 21.6 56 0.0019 23.3 2.5 24 114-137 27-52 (197)
27 4h3k_B RNA polymerase II subun 20.2 98 0.0034 25.3 3.9 79 37-122 28-129 (214)
28 2f2f_C CDT C, cytolethal diste 20.1 28 0.00097 27.7 0.7 10 104-113 23-32 (186)
No 1
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1
Probab=87.71 E-value=0.34 Score=36.32 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=21.7
Q ss_pred CCceecCCceeeeeeccccCCC-CC
Q 031814 126 ENYTKRDSGLIYRDFEVGKGNF-PL 149 (152)
Q Consensus 126 d~Yv~~dsGLIYkDf~~G~G~~-Pk 149 (152)
+|+++.++||.|++.+.|+|.. |+
T Consensus 30 ~~~~~~~sGl~~~vl~~G~G~~~~~ 54 (167)
T 1jvw_A 30 PDAVKLPSGLVFQRIARGSGKRAPA 54 (167)
T ss_dssp TTEEECTTSCEEEEEECCCCSBCCC
T ss_pred CCcEECCCCEEEEEEEcCCCCcCCC
Confidence 5788899999999999999997 75
No 2
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*
Probab=86.28 E-value=0.45 Score=37.10 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=22.9
Q ss_pred CCCceecCCceeeeeeccccCCCCCC
Q 031814 125 SENYTKRDSGLIYRDFEVGKGNFPLY 150 (152)
Q Consensus 125 ~d~Yv~~dsGLIYkDf~~G~G~~Pk~ 150 (152)
.+|+++.++||.|+..+.|+|+.|+.
T Consensus 98 ~~~v~~~~sGl~y~vl~~G~G~~p~~ 123 (213)
T 1fd9_A 98 KPGVVVLPSGLQYKVINSGNGVKPGK 123 (213)
T ss_dssp STTEEECTTSCEEEEEECCCSCCCCT
T ss_pred cCCcEECCCccEEEEEecCCCccCCC
Confidence 46788899999999999999998863
No 3
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0
Probab=83.63 E-value=0.57 Score=37.06 Aligned_cols=26 Identities=15% Similarity=0.300 Sum_probs=22.9
Q ss_pred CCCceecCCceeeeeeccccCCCCCC
Q 031814 125 SENYTKRDSGLIYRDFEVGKGNFPLY 150 (152)
Q Consensus 125 ~d~Yv~~dsGLIYkDf~~G~G~~Pk~ 150 (152)
.+|+++.+|||.|+..+.|+|..|+.
T Consensus 109 ~~gv~~~~sGl~y~vl~~G~G~~p~~ 134 (219)
T 3oe2_A 109 KPGVKELADGILMTELTPGTGPKPDA 134 (219)
T ss_dssp STTCEECGGGCEEEEEECCCSCCCCT
T ss_pred CCCcEECCCCeEEEEEecCCCccCCC
Confidence 37788999999999999999998863
No 4
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*
Probab=82.98 E-value=0.89 Score=32.32 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.8
Q ss_pred CCCceecCCceeeeeeccccCCCCC
Q 031814 125 SENYTKRDSGLIYRDFEVGKGNFPL 149 (152)
Q Consensus 125 ~d~Yv~~dsGLIYkDf~~G~G~~Pk 149 (152)
..++++.++||.|++.+.|+|+.|+
T Consensus 20 ~~~~~~~~~gl~~~~l~~G~G~~~~ 44 (133)
T 2y78_A 20 HMTVVTTESGLKYEDLTEGSGAEAR 44 (133)
T ss_dssp TTCCEECTTSCEEEEEECCSSCBCC
T ss_pred CCCcEECCCCEEEEEEEcCCCCCCC
Confidence 3568899999999999999998775
No 5
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=75.43 E-value=1.8 Score=33.14 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.5
Q ss_pred CCceecCCceeeeeeccccCCCCC
Q 031814 126 ENYTKRDSGLIYRDFEVGKGNFPL 149 (152)
Q Consensus 126 d~Yv~~dsGLIYkDf~~G~G~~Pk 149 (152)
..|++.++||.|++.+.|+|..|+
T Consensus 97 ~t~~~~~sGl~~~vl~~G~G~~~~ 120 (209)
T 3uf8_A 97 STVVTTESGLKYEDLTEGSGAEAR 120 (209)
T ss_dssp CCCEECTTSCEEEEEECCCSCBCC
T ss_pred ccccCCCCceEEEEEEcCCCCcCC
Confidence 349999999999999999998875
No 6
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A
Probab=74.96 E-value=1.9 Score=33.82 Aligned_cols=25 Identities=32% Similarity=0.589 Sum_probs=21.4
Q ss_pred CCceecCCceeeeeeccccCCCCCC
Q 031814 126 ENYTKRDSGLIYRDFEVGKGNFPLY 150 (152)
Q Consensus 126 d~Yv~~dsGLIYkDf~~G~G~~Pk~ 150 (152)
+++++.++||.|+..+.|+|+.|+.
T Consensus 114 ~~v~~~~sGl~y~vl~~G~G~~p~~ 138 (224)
T 1q6h_A 114 KGVKTSSTGLVYQVVEAGKGEAPKD 138 (224)
T ss_dssp TTEEECTTSCEEEEEECCSSCCCCT
T ss_pred CCeEECCCceEEEEEecccCccccC
Confidence 5666778999999999999998863
No 7
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}
Probab=70.70 E-value=2.7 Score=31.39 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=21.1
Q ss_pred CCceecCCceeeeeeccccCCCCC
Q 031814 126 ENYTKRDSGLIYRDFEVGKGNFPL 149 (152)
Q Consensus 126 d~Yv~~dsGLIYkDf~~G~G~~Pk 149 (152)
+++.+.++||.|+..+.|+|..|+
T Consensus 42 ~~~~~~~~gl~~~vl~~G~G~~~~ 65 (180)
T 2f4e_A 42 SEAEVLDEKVSKQIIKEGHGSKPS 65 (180)
T ss_dssp SCCEEEETTEEEEEEECCBSCCBC
T ss_pred CCcEECCCceEEEEEeCCCCCCCC
Confidence 457888999999999999999775
No 8
>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}
Probab=61.51 E-value=5.4 Score=29.50 Aligned_cols=42 Identities=14% Similarity=0.087 Sum_probs=27.9
Q ss_pred CCcchhhhccceeEEecCCCceecCCce-eeeeeccccCC--CCC
Q 031814 108 EGFPNFIREGFEVKVVTSENYTKRDSGL-IYRDFEVGKGN--FPL 149 (152)
Q Consensus 108 ~DFP~FIREGfdVKVv~~d~Yv~~dsGL-IYkDf~~G~G~--~Pk 149 (152)
++|=+=....-.|+.-..+...+.+||+ .|++.+.|+|+ .|+
T Consensus 17 ~~fl~~~~~~~gv~~~~~~~~~~~~sG~v~~~vl~~G~G~~~~p~ 61 (157)
T 2jwx_A 17 REFLAAMEPEPAPAPAPEEWLDILGNGLLRKKTLVPGPPGSSRPV 61 (157)
T ss_dssp CSSCSCCSSCCCCCCCCCSCEESSSSSSEEEEEEECCSTTSCCCC
T ss_pred HHHHHHhccCCCccccccccceECCCCCEEEEEEEccCCCccCCC
Confidence 3443333334445544556667889998 59999999998 665
No 9
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=58.86 E-value=2.9 Score=28.92 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=25.4
Q ss_pred hhccceeEEecCCCceecCCceeeeeeccccCCC
Q 031814 114 IREGFEVKVVTSENYTKRDSGLIYRDFEVGKGNF 147 (152)
Q Consensus 114 IREGfdVKVv~~d~Yv~~dsGLIYkDf~~G~G~~ 147 (152)
.++||.++|+...--....+=|. ||.++.||.
T Consensus 46 ~~~~~~irv~NK~~~L~~~~~L~--d~~ItnGD~ 77 (81)
T 2bps_A 46 PREGHWIRVVNKDKVFSGECKLS--DCGITNGDR 77 (81)
T ss_dssp CCTTCEEEEGGGTEEEETTSBTG--GGTCCTTCE
T ss_pred CCCCCEEEEecCCEEEcCCCEEe--eCCcCCCCE
Confidence 45899999998776666666665 999999985
No 10
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}
Probab=54.36 E-value=3.8 Score=28.78 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=17.5
Q ss_pred eecCCceeeeeeccccCCCCC
Q 031814 129 TKRDSGLIYRDFEVGKGNFPL 149 (152)
Q Consensus 129 v~~dsGLIYkDf~~G~G~~Pk 149 (152)
++.++||.|++.+.|+|+.|+
T Consensus 22 v~~~~gl~~~vl~~G~g~~~~ 42 (134)
T 3b7x_A 22 ISGDRGVLKDVIREGAGDLVA 42 (134)
T ss_dssp SSSSSSEEEEEEECCEEEECC
T ss_pred eeCCCCEEEEEEEcCCCCCCC
Confidence 346789999999999998664
No 11
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=53.07 E-value=8.9 Score=29.30 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=20.0
Q ss_pred CceecCCceeeeeeccccCCCCCC
Q 031814 127 NYTKRDSGLIYRDFEVGKGNFPLY 150 (152)
Q Consensus 127 ~Yv~~dsGLIYkDf~~G~G~~Pk~ 150 (152)
+..+.++|+.|++.+.|+|+.|+.
T Consensus 43 ~~~~~~~~~~~~~~~~g~g~~~~~ 66 (338)
T 2if4_A 43 EAEVLDEKVSKQIIKEGHGSKPSK 66 (338)
T ss_dssp CCEEEETTEEEEEEECCBSCCCCT
T ss_pred CceeCCCCeEEEEEeCCCCCCCCC
Confidence 456678999999999999998763
No 12
>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A
Probab=52.30 E-value=8 Score=27.48 Aligned_cols=39 Identities=23% Similarity=0.413 Sum_probs=26.8
Q ss_pred cCCCCCcchhhhccceeEEecCCCceecCCceeeeeeccccCC-CCC
Q 031814 104 NSAPEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGN-FPL 149 (152)
Q Consensus 104 NnaP~DFP~FIREGfdVKVv~~d~Yv~~dsGLIYkDf~~G~G~-~Pk 149 (152)
+..-..+..+-.+|-||-- ..|+|++|+..+.|+|+ .|+
T Consensus 13 ~~~~~~~~~~~~~~~di~~-------~~d~gv~~~i~~~G~G~~~p~ 52 (144)
T 3o5e_A 13 NNEESPTATVAEQGEDITS-------KKDRGVLKIVKRVGNGEETPM 52 (144)
T ss_dssp ----CTTHHHHHHCEECCS-------SCSSSEEEEEEECCBSSCCCC
T ss_pred ccccccccccccccccccc-------cCCCeEEEEEEECCCCCccCC
Confidence 3444556667777777532 47899999999999998 674
No 13
>2p62_A Hypothetical protein PH0156; structural genomics, pyrococcu horikoshii OT3, PSI, protein structure initiative; 2.50A {Pyrococcus horikoshii} SCOP: e.67.1.1
Probab=40.51 E-value=12 Score=31.03 Aligned_cols=29 Identities=17% Similarity=0.391 Sum_probs=24.4
Q ss_pred hhhhhcCCCCCcchhhhccc--------------eeEEecCCCc
Q 031814 99 RMQKENSAPEGFPNFIREGF--------------EVKVVTSENY 128 (152)
Q Consensus 99 RIQ~~NnaP~DFP~FIREGf--------------dVKVv~~d~Y 128 (152)
.-++.+.+|+++| +|..+| +|-|+..+|+
T Consensus 26 gf~e~~~~p~~l~-~ie~~~~~~~~~~~l~~~~~~I~V~~seGk 68 (241)
T 2p62_A 26 GFREAKKLTPEFP-IGKWGFRIGEHPLVLEKDNIALVIIHAEGK 68 (241)
T ss_dssp CCEECCSCCCCCC-HHHHCCCTTCCCEEEEETTEEEEEECSCCT
T ss_pred CcccccccCcccc-ccccccccccchhhhcccCceEEEEeCcch
Confidence 5567788999999 999999 7888888775
No 14
>2xi5_A RNA polymerase L, L-protein; transferase, bunyaviridae, orthobunyavirus, aedes triseriatu hydrolase; 2.20A {Bunyavirus la crosse} PDB: 2xi7_A*
Probab=38.11 E-value=12 Score=30.22 Aligned_cols=31 Identities=23% Similarity=0.314 Sum_probs=26.6
Q ss_pred ccceeEEecCCCceecCCceeeeeeccccCC
Q 031814 116 EGFEVKVVTSENYTKRDSGLIYRDFEVGKGN 146 (152)
Q Consensus 116 EGfdVKVv~~d~Yv~~dsGLIYkDf~~G~G~ 146 (152)
.-|.+.-+|||||+.-..-|+--||+|--++
T Consensus 70 ~~~~~~~~TPDNYii~~~~L~I~DyKVSVd~ 100 (184)
T 2xi5_A 70 LTIDAPHITPDNYLYINNVLYIIDYKVSVSN 100 (184)
T ss_dssp TTCCCCCCCCSEEEEETTEEEEEEEEECSSS
T ss_pred heeeccccCCCcEEEECCEEEEEEEEEEecC
Confidence 4577888999999999999999999986553
No 15
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=30.00 E-value=23 Score=27.60 Aligned_cols=36 Identities=25% Similarity=0.340 Sum_probs=26.2
Q ss_pred ccceeEEecCCCce----ecCCceeeeeeccccCCCCCCC
Q 031814 116 EGFEVKVVTSENYT----KRDSGLIYRDFEVGKGNFPLYW 151 (152)
Q Consensus 116 EGfdVKVv~~d~Yv----~~dsGLIYkDf~~G~G~~Pk~w 151 (152)
+|++|+|+.-+.|. ...+.+|.==--.|.|+.|.+|
T Consensus 67 ~g~~v~v~~l~~~~~~~l~~~~~vI~~tsTyG~Ge~Pdna 106 (219)
T 3hr4_A 67 CAFNPKVVCMDKYRLSCLEEERLLLVVTSTFGNGDCPGNG 106 (219)
T ss_dssp TTSEEEEEEGGGCCGGGGGTCSEEEEEEECBTTTBCCGGG
T ss_pred cCCCeEEEEcccCCHhHhccCCeEEEEEeccCCCcCCHHH
Confidence 48888887655553 3456777777778999999865
No 16
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A
Probab=29.36 E-value=28 Score=27.49 Aligned_cols=19 Identities=26% Similarity=0.443 Sum_probs=16.9
Q ss_pred cCCceeeeeeccccCCC-CC
Q 031814 131 RDSGLIYRDFEVGKGNF-PL 149 (152)
Q Consensus 131 ~dsGLIYkDf~~G~G~~-Pk 149 (152)
.++||.|+..+.|+|+- |+
T Consensus 49 ~~~gl~~~vl~~G~G~~~~~ 68 (280)
T 1q1c_A 49 QDEGVLKVIKREGTGTEMPM 68 (280)
T ss_dssp CSSSEEEEEEECCSSSCCCC
T ss_pred CCCceEEEEEeCCCCCcCCC
Confidence 58999999999999986 65
No 17
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=28.20 E-value=43 Score=24.45 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=18.0
Q ss_pred hccceeEEecCCC--ceecCCceee
Q 031814 115 REGFEVKVVTSEN--YTKRDSGLIY 137 (152)
Q Consensus 115 REGfdVKVv~~d~--Yv~~dsGLIY 137 (152)
+.||+|.+++++| -++...|+..
T Consensus 34 ~ag~~v~~vs~~g~~~v~~~~G~~v 58 (208)
T 3ot1_A 34 RAGFQVTMAAVGDKLQVQGSRGVWL 58 (208)
T ss_dssp HTTCEEEEEESSSCSEEECTTSCEE
T ss_pred HCCCEEEEEEcCCCcceecCCCcEE
Confidence 4579999999985 6777888643
No 18
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=27.40 E-value=47 Score=23.57 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=17.7
Q ss_pred hccceeEEecCCC--ceecCCceee
Q 031814 115 REGFEVKVVTSEN--YTKRDSGLIY 137 (152)
Q Consensus 115 REGfdVKVv~~d~--Yv~~dsGLIY 137 (152)
+.||+|.++++++ -++...|+-.
T Consensus 30 ~ag~~v~~~s~~~~~~v~~~~g~~i 54 (190)
T 4e08_A 30 RAGIKVTVAGLNGGEAVKCSRDVQI 54 (190)
T ss_dssp HTTCEEEEEESSSSSCEECTTSCEE
T ss_pred HCCCEEEEEECCCCcceecCCCcEE
Confidence 4579999999875 6777777654
No 19
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=26.15 E-value=52 Score=22.60 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=16.2
Q ss_pred hccceeEEecCCC-ceecCCce
Q 031814 115 REGFEVKVVTSEN-YTKRDSGL 135 (152)
Q Consensus 115 REGfdVKVv~~d~-Yv~~dsGL 135 (152)
+.||+|.++++++ -++...|+
T Consensus 27 ~ag~~v~~vs~~~~~v~~~~g~ 48 (168)
T 3l18_A 27 EEGHEVYVASFQRGKITGKHGY 48 (168)
T ss_dssp HTTCEEEEEESSSEEEECTTSC
T ss_pred HCCCEEEEEECCCCEEecCCCc
Confidence 4589999999886 56666775
No 20
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A
Probab=26.07 E-value=40 Score=26.57 Aligned_cols=19 Identities=37% Similarity=0.485 Sum_probs=16.2
Q ss_pred cCCceeeeeeccccCC-CCC
Q 031814 131 RDSGLIYRDFEVGKGN-FPL 149 (152)
Q Consensus 131 ~dsGLIYkDf~~G~G~-~Pk 149 (152)
.|.|++|++.+.|+|. .|+
T Consensus 166 ~d~gl~~~il~~G~G~~~~~ 185 (280)
T 1q1c_A 166 EDGGIIRRIQTRGEGYAKPN 185 (280)
T ss_dssp CSSSEEEEEEECCSCSCCCC
T ss_pred cccceeEEeeeccccccccc
Confidence 6889999999999998 354
No 21
>2dco_A S1P4 first extracellular loop peptidomimetic; coiled coil, disulfide, helix-turn-helix, 3-10 helix, membrane protein; NMR {Homo sapiens}
Probab=25.01 E-value=13 Score=22.95 Aligned_cols=13 Identities=38% Similarity=0.578 Sum_probs=9.0
Q ss_pred CCCCCcchhhhccce
Q 031814 105 SAPEGFPNFIREGFE 119 (152)
Q Consensus 105 naP~DFP~FIREGfd 119 (152)
-+|..+ |.||||+
T Consensus 21 LaPa~W--flREgfq 33 (34)
T 2dco_A 21 LAPAQW--SCRETFQ 33 (34)
T ss_dssp SSSSTT--SHHHHSC
T ss_pred echHHH--HHHHhcc
Confidence 355554 8899986
No 22
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=23.68 E-value=60 Score=23.52 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=17.7
Q ss_pred hccceeEEecCCC----ceecCCceee
Q 031814 115 REGFEVKVVTSEN----YTKRDSGLIY 137 (152)
Q Consensus 115 REGfdVKVv~~d~----Yv~~dsGLIY 137 (152)
+.||+|.++++++ -++..+|+..
T Consensus 27 ~ag~~v~~vs~~~~~~~~v~~~~g~~v 53 (205)
T 2ab0_A 27 RGGIKVTTASVASDGNLAITCSRGVKL 53 (205)
T ss_dssp HTTCEEEEEECSSTTCCEEECTTSCEE
T ss_pred HCCCEEEEEeCCCCCCceeecCCCeEE
Confidence 4479999999876 5777778654
No 23
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A
Probab=23.20 E-value=53 Score=26.26 Aligned_cols=34 Identities=12% Similarity=0.184 Sum_probs=24.2
Q ss_pred ccceeEEecCCC--ceecCCceeeeeeccccC-CCCC
Q 031814 116 EGFEVKVVTSEN--YTKRDSGLIYRDFEVGKG-NFPL 149 (152)
Q Consensus 116 EGfdVKVv~~d~--Yv~~dsGLIYkDf~~G~G-~~Pk 149 (152)
-=|+|.++.-.. -++.|+|++|+..+.|+| +.|+
T Consensus 225 l~~~vel~~~~~v~dv~~d~~~~~~i~~~g~g~~~~~ 261 (356)
T 3jxv_A 225 LVIDLELVSWKTVTEIGDDKKILKKVLKEXEGYERPN 261 (356)
T ss_dssp EEEEEEEEEEECEEEESTTCCEEEEEEECCBSSCCCC
T ss_pred EEEEEEEEEEecccccccccceeEEeeecccccCCCC
Confidence 347777765221 245678999999999999 6665
No 24
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=22.75 E-value=61 Score=23.74 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=17.9
Q ss_pred hhhccceeEEecCCC-ceecCCceee
Q 031814 113 FIREGFEVKVVTSEN-YTKRDSGLIY 137 (152)
Q Consensus 113 FIREGfdVKVv~~d~-Yv~~dsGLIY 137 (152)
|-|.||+|.++++++ -++...|+-.
T Consensus 31 l~~ag~~V~~~s~~~~~v~~~~G~~v 56 (177)
T 4hcj_A 31 FESAGYKTKVSSTFIGTAQGKLGGMT 56 (177)
T ss_dssp HHHTTCEEEEEESSSEEEEETTSCEE
T ss_pred HHHCCCEEEEEECCCCeEeeCCCCEE
Confidence 457899999998765 4556666643
No 25
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}
Probab=21.93 E-value=69 Score=22.20 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=18.1
Q ss_pred hccceeEEecCCC--ceecCCceee
Q 031814 115 REGFEVKVVTSEN--YTKRDSGLIY 137 (152)
Q Consensus 115 REGfdVKVv~~d~--Yv~~dsGLIY 137 (152)
|.||+|.++++++ -++..+|+..
T Consensus 27 ~~~~~v~~vs~~~~~~v~~~~g~~v 51 (175)
T 3cne_A 27 ENGISYKVFAVSDTKEIKTNSGMVL 51 (175)
T ss_dssp HTTCEEEEEESSSSSEEEBTTSCEE
T ss_pred eCCCEEEEEECCCCCceecCCCeEE
Confidence 6799999999873 6777777643
No 26
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=21.65 E-value=56 Score=23.28 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=17.8
Q ss_pred hhccceeEEecCCC--ceecCCceee
Q 031814 114 IREGFEVKVVTSEN--YTKRDSGLIY 137 (152)
Q Consensus 114 IREGfdVKVv~~d~--Yv~~dsGLIY 137 (152)
-+.||+|.++++++ -++...|+..
T Consensus 27 ~~ag~~v~~vs~~~~~~v~~~~g~~v 52 (197)
T 2rk3_A 27 RRAGIKVTVAGLAGKDPVQCSRDVVI 52 (197)
T ss_dssp HHTTCEEEEEETTCSSCEECTTSCEE
T ss_pred HHCCCEEEEEEcCCCCccccCCCCEE
Confidence 34579999999775 5788888643
No 27
>4h3k_B RNA polymerase II subunit A C-terminal domain PHO SSU72; heat repeat, phosphatase, RNA polymerase II, hydrolase; HET: SEP; 2.00A {Homo sapiens} PDB: 3o2q_B* 4h3h_B* 3o2s_B
Probab=20.24 E-value=98 Score=25.29 Aligned_cols=79 Identities=28% Similarity=0.436 Sum_probs=44.8
Q ss_pred ceeEeecCCCccccccchhhhhhhhhhhHhhhhcCcccccccccccc-----CCCchhHH--H----------------H
Q 031814 37 HIVRCSSSHNLKDNGFHCKVKLKRRVVPFLLFSSGLFPTLSASGKTK-----SKNPYDEK--R----------------L 93 (152)
Q Consensus 37 ~~~~c~~~~~~kd~~~~~~~~lrrr~~l~~l~ss~~~~~lss~~ktk-----s~~pydEk--r----------------l 93 (152)
--++|.+|++.- -.+-..|+++-+-.-.+.+|--+.|+.-.-.| =..||+|- . .
T Consensus 28 ~avVCaSN~NRS---MEAH~~L~k~Gf~V~SfGTGs~VkLPGps~d~PnvY~FgT~Y~~iy~dL~~kd~~lY~~NGlL~M 104 (214)
T 4h3k_B 28 VAVVSSSNQNRS---MEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLRKDKELYTQNGILHM 104 (214)
T ss_dssp EEEEESSSSSHH---HHHHHHHHHTTCEEEEEECSSSEEECCSSTTCCEEECTTSCHHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred EEEECCCCcchh---HHHHHHHHHCCCceEeecCCCccCCCCCCCCCCCccCCCCCHHHHHHHHHhHCHHHHHHcCcHHH
Confidence 458999998874 11223555555544455566444444322222 13688773 3 3
Q ss_pred HHHhHhhhhhcCCCCCcchhhhccceeEE
Q 031814 94 LEQNKRMQKENSAPEGFPNFIREGFEVKV 122 (152)
Q Consensus 94 L~~N~RIQ~~NnaP~DFP~FIREGfdVKV 122 (152)
|+-|+||+ .||+-|-+- ++=|||-+
T Consensus 105 LdRN~~iK---~~PER~Q~~-~~~fDvVi 129 (214)
T 4h3k_B 105 LDRNKRIK---PRPERFQNC-KDLFDLIL 129 (214)
T ss_dssp HHHHHTTC---SSCCBGGGC-CCCCSEEE
T ss_pred HhCCcccc---CCChhhhcc-CCCccEEE
Confidence 45555555 389999874 44577754
No 28
>2f2f_C CDT C, cytolethal distending toxin C; actinobacillus actinomycetemcomitans, oligomerization, stability and toxic activity; 2.40A {Aggregatibacter actinomycetemcomitans} SCOP: b.42.2.1
Probab=20.14 E-value=28 Score=27.72 Aligned_cols=10 Identities=30% Similarity=0.843 Sum_probs=7.5
Q ss_pred cCCCCCcchh
Q 031814 104 NSAPEGFPNF 113 (152)
Q Consensus 104 NnaP~DFP~F 113 (152)
|+-|+|+|+|
T Consensus 23 ~~~~~d~~d~ 32 (186)
T 2f2f_C 23 NPDPTTYPDV 32 (186)
T ss_dssp --CCCSCTTS
T ss_pred CCCccccccc
Confidence 5679999999
Done!