Query 031815
Match_columns 152
No_of_seqs 202 out of 1166
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 08:50:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031815.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031815hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_X 60S ribosomal protein L 100.0 1.9E-69 6.4E-74 423.3 10.5 151 1-152 1-152 (152)
2 3u5e_X 60S ribosomal protein L 100.0 3.8E-67 1.3E-71 406.5 12.5 139 14-152 4-142 (142)
3 4a17_R RPL23A, 60S ribosomal p 100.0 8.6E-66 2.9E-70 401.7 10.3 143 9-152 5-150 (150)
4 2zkr_s 60S ribosomal protein L 100.0 1.5E-65 5.2E-70 402.7 9.0 152 1-152 1-156 (156)
5 3bbo_V Ribosomal protein L23; 100.0 3.7E-47 1.2E-51 306.1 4.0 111 36-152 84-194 (198)
6 3j21_T 50S ribosomal protein L 100.0 1.2E-42 4E-47 249.7 10.5 86 67-152 1-86 (86)
7 1vq8_S 50S ribosomal protein L 100.0 1.7E-39 6E-44 232.7 9.4 84 69-152 2-85 (85)
8 3tve_T 50S ribosomal protein L 100.0 4.8E-33 1.6E-37 201.7 6.6 78 68-147 1-91 (92)
9 2zjr_Q 50S ribosomal protein L 100.0 1.1E-32 3.9E-37 200.8 6.5 81 67-149 1-94 (95)
10 3r8s_T 50S ribosomal protein L 100.0 5.7E-32 2E-36 196.4 6.8 76 66-141 4-92 (93)
11 1owx_A Lupus LA protein, SS-B, 81.5 1.6 5.3E-05 32.1 4.0 56 89-149 17-76 (121)
12 2dhg_A TRNA selenocysteine ass 75.2 9.2 0.00032 25.1 6.1 55 91-146 12-68 (104)
13 3md3_A Nuclear and cytoplasmic 69.3 15 0.0005 25.3 6.3 53 92-146 4-58 (166)
14 2ywk_A Putative RNA-binding pr 64.8 24 0.00082 22.5 6.3 51 94-146 22-74 (95)
15 2do4_A Squamous cell carcinoma 63.2 18 0.00061 23.5 5.5 53 92-146 21-75 (100)
16 1x5p_A Negative elongation fac 59.7 30 0.001 22.4 6.1 52 90-146 15-66 (97)
17 2e44_A Insulin-like growth fac 59.7 32 0.0011 22.0 6.6 54 90-146 17-71 (96)
18 2do0_A HnRNP M, heterogeneous 59.3 18 0.00063 24.0 5.0 55 91-147 18-74 (114)
19 2cq2_A Hypothetical protein LO 57.6 19 0.00065 25.6 5.1 52 91-147 26-81 (114)
20 2d9o_A DNAJ (HSP40) homolog, s 57.3 20 0.00068 24.6 5.0 46 98-147 27-72 (100)
21 1whw_A Hypothetical protein ri 54.4 21 0.00073 23.0 4.6 49 96-146 16-67 (99)
22 2hvz_A Splicing factor, argini 54.1 27 0.00093 22.7 5.1 50 93-146 5-54 (101)
23 3d2w_A TAR DNA-binding protein 53.1 15 0.00051 24.0 3.7 50 90-143 13-62 (89)
24 2lxi_A RNA-binding protein 10; 53.0 9.5 0.00032 25.1 2.7 51 94-145 7-60 (91)
25 2err_A Ataxin-2-binding protei 52.1 16 0.00054 24.6 3.8 55 91-147 30-87 (109)
26 2dnh_A Bruno-like 5, RNA bindi 52.0 29 0.001 22.6 5.0 49 96-146 23-73 (105)
27 3nmr_A Cugbp ELAV-like family 51.9 33 0.0011 23.7 5.6 54 91-146 98-153 (175)
28 3q2s_C Cleavage and polyadenyl 51.1 42 0.0014 25.9 6.5 56 91-147 71-130 (229)
29 3s7r_A Heterogeneous nuclear r 51.1 43 0.0015 21.0 5.9 51 93-145 16-69 (87)
30 3beg_B Splicing factor, argini 50.7 23 0.0008 24.0 4.5 53 89-147 17-69 (115)
31 3mdf_A Peptidyl-prolyl CIS-tra 49.1 30 0.001 21.5 4.5 51 94-146 13-66 (85)
32 2cqc_A Arginine/serine-rich sp 48.8 40 0.0014 21.3 5.2 54 91-146 18-74 (95)
33 1x4a_A Splicing factor, argini 48.0 27 0.00094 23.0 4.4 51 94-146 28-78 (109)
34 1s79_A Lupus LA protein; RRM, 46.9 39 0.0013 22.7 5.2 54 90-145 13-68 (103)
35 2adc_A Polypyrimidine tract-bi 46.8 32 0.0011 25.9 5.1 52 93-147 156-207 (229)
36 2cph_A RNA binding motif prote 46.8 36 0.0012 22.2 4.8 54 94-149 21-78 (107)
37 2g1d_A 30S ribosomal protein S 46.6 36 0.0012 24.0 5.0 66 80-149 8-81 (98)
38 4a8x_A RNA-binding protein wit 46.4 34 0.0012 21.3 4.5 53 93-147 9-65 (88)
39 4fxv_A ELAV-like protein 1; RN 45.8 50 0.0017 21.8 5.5 53 92-146 23-78 (99)
40 2dha_A FLJ20171 protein; RRM d 45.5 24 0.00081 25.0 4.0 56 90-145 23-84 (123)
41 2dgw_A Probable RNA-binding pr 45.3 35 0.0012 21.6 4.5 47 95-144 17-65 (91)
42 1p27_B RNA-binding protein 8A; 45.2 55 0.0019 21.2 5.6 52 93-146 28-82 (106)
43 2fy1_A RNA-binding motif prote 44.6 33 0.0011 23.4 4.5 51 94-146 13-65 (116)
44 3a9j_A Ubiquitin; protein comp 44.6 35 0.0012 20.8 4.3 36 89-124 10-45 (76)
45 2cq3_A RNA-binding protein 9; 44.4 34 0.0012 22.2 4.4 49 96-146 23-72 (103)
46 3ulh_A THO complex subunit 4; 44.0 58 0.002 21.2 5.6 55 90-146 29-87 (107)
47 2dnn_A RNA-binding protein 12; 43.6 16 0.00056 25.2 2.8 47 96-145 24-72 (109)
48 4f25_A Polyadenylate-binding p 43.5 38 0.0013 22.9 4.7 54 90-145 7-61 (115)
49 1ywx_A 30S ribosomal protein S 42.9 88 0.003 22.2 6.9 68 78-149 6-80 (102)
50 1x4g_A Nucleolysin TIAR; struc 42.8 51 0.0017 21.7 5.1 52 90-146 25-78 (109)
51 2cq4_A RNA binding motif prote 42.7 51 0.0017 21.8 5.2 54 91-146 28-84 (114)
52 1wez_A HnRNP H', FTP-3, hetero 42.5 19 0.00065 24.2 2.9 48 95-145 22-71 (102)
53 1x4c_A Splicing factor, argini 42.3 38 0.0013 22.5 4.4 49 92-146 19-67 (108)
54 3k9o_B Ubiquitin, UBB+1; E2-25 42.1 36 0.0012 22.2 4.2 36 89-124 11-46 (96)
55 2dnm_A SRP46 splicing factor; 41.8 58 0.002 21.1 5.2 50 96-147 21-73 (103)
56 2jvr_A Nucleolar protein 3; RN 41.7 36 0.0012 23.6 4.3 52 92-146 32-84 (111)
57 3phx_B Ubiquitin-like protein 41.6 47 0.0016 20.8 4.6 35 89-123 14-48 (79)
58 2v94_A RPS24, 30S ribosomal pr 41.6 60 0.0021 23.3 5.6 64 82-149 18-89 (107)
59 3ex7_B RNA-binding protein 8A; 41.5 40 0.0014 22.7 4.5 52 93-146 27-81 (126)
60 1xn9_A 30S ribosomal protein S 41.3 92 0.0031 22.0 7.0 66 80-149 8-80 (101)
61 1wi8_A EIF-4B, eukaryotic tran 41.3 23 0.00077 23.3 3.1 47 96-145 23-73 (104)
62 1ndd_A NEDD8, protein (ubiquit 41.1 43 0.0015 20.4 4.3 36 89-124 10-45 (76)
63 2dnz_A Probable RNA-binding pr 40.7 49 0.0017 21.0 4.6 50 95-146 12-64 (95)
64 2xs2_A Deleted in azoospermia- 40.5 72 0.0025 20.5 6.3 50 95-146 16-67 (102)
65 3n3k_B Ubiquitin; hydrolase, p 40.4 40 0.0014 21.2 4.1 36 89-124 13-48 (85)
66 2dis_A Unnamed protein product 40.4 48 0.0016 21.7 4.7 55 91-148 9-71 (109)
67 1qm9_A Polypyrimidine tract-bi 40.3 36 0.0012 24.5 4.3 50 95-147 127-176 (198)
68 2hgm_A HNRPF protein, heteroge 40.2 28 0.00095 24.9 3.6 55 91-146 43-101 (126)
69 3s8s_A Histone-lysine N-methyl 40.0 56 0.0019 22.2 5.1 53 91-145 9-64 (110)
70 2rs2_A Musashi-1, RNA-binding 39.8 39 0.0013 22.6 4.2 54 92-147 29-85 (109)
71 2kt5_A RNA and export factor-b 39.8 43 0.0015 22.7 4.5 54 90-145 35-92 (124)
72 1u6f_A Tcubp1, RNA-binding pro 38.8 59 0.002 22.3 5.1 55 91-147 43-102 (139)
73 4dwf_A HLA-B-associated transc 38.5 58 0.002 21.0 4.8 36 89-124 15-50 (90)
74 2f3j_A RNA and export factor b 38.5 41 0.0014 24.9 4.5 55 90-146 88-146 (177)
75 2dnq_A RNA-binding protein 4B; 38.1 63 0.0022 20.4 4.9 44 96-146 16-59 (90)
76 2d9p_A Polyadenylate-binding p 38.0 53 0.0018 21.3 4.6 53 91-146 18-72 (103)
77 2xzm_P RPS24E; ribosome, trans 37.9 1.2E+02 0.0039 23.2 6.9 57 90-149 19-83 (149)
78 3mtn_B UBA80, ubcep1, ubiquiti 37.4 53 0.0018 20.5 4.3 35 89-123 13-47 (85)
79 2dgv_A HnRNP M, heterogeneous 36.6 78 0.0027 19.8 5.1 49 96-146 16-65 (92)
80 2dgt_A RNA-binding protein 30; 36.2 56 0.0019 20.8 4.4 49 91-146 11-61 (92)
81 1fxl_A Paraneoplastic encephal 36.2 85 0.0029 21.3 5.6 52 93-146 7-61 (167)
82 2dh8_A DAZ-associated protein 35.7 89 0.003 20.2 6.4 48 96-145 24-74 (105)
83 4eew_A Large proline-rich prot 35.6 70 0.0024 20.4 4.8 35 89-123 27-61 (88)
84 3v6c_B Ubiquitin; structural g 35.3 56 0.0019 21.2 4.3 36 89-124 27-62 (91)
85 4fbj_B NEDD8; effector-HOST ta 35.1 47 0.0016 21.7 3.9 36 89-124 10-45 (88)
86 4hcn_B Polyubiquitin, ubiquiti 35.0 45 0.0016 22.2 3.9 35 89-123 32-66 (98)
87 2hzc_A Splicing factor U2AF 65 35.0 80 0.0027 19.5 5.2 50 92-144 10-68 (87)
88 3dbh_I NEDD8; cell cycle, acti 34.7 55 0.0019 20.7 4.1 35 89-123 22-56 (88)
89 2dng_A Eukaryotic translation 34.7 43 0.0015 21.8 3.7 47 96-145 23-72 (103)
90 1x5o_A RNA binding motif, sing 34.0 50 0.0017 21.8 4.0 51 93-145 30-82 (114)
91 2voo_A Lupus LA protein; RNA-b 33.8 89 0.003 23.3 5.8 54 92-147 113-168 (193)
92 2i2y_A Fusion protein consists 33.7 51 0.0017 23.0 4.2 47 95-145 80-126 (150)
93 2cqi_A Nucleolysin TIAR; RNA r 33.6 95 0.0032 20.0 5.3 54 90-145 15-71 (103)
94 1wh3_A 59 kDa 2'-5'-oligoadeny 33.6 53 0.0018 20.9 3.9 35 90-124 18-52 (87)
95 3md1_A Nuclear and cytoplasmic 33.6 83 0.0028 19.2 5.1 54 92-147 5-61 (83)
96 2dzi_A Ubiquitin-like protein 33.6 61 0.0021 20.1 4.2 36 89-124 17-52 (81)
97 2cqd_A RNA-binding region cont 33.4 72 0.0025 21.1 4.7 51 93-145 22-75 (116)
98 1whx_A Hypothetical protein ri 33.2 64 0.0022 21.7 4.5 45 96-145 18-62 (111)
99 2j8a_A Histone-lysine N-methyl 33.0 1.4E+02 0.0047 22.4 6.5 46 90-137 4-56 (136)
100 1x5u_A Splicing factor 3B subu 33.0 66 0.0023 20.8 4.4 51 95-147 22-75 (105)
101 2dgp_A Bruno-like 4, RNA bindi 33.0 63 0.0022 20.9 4.3 49 96-146 21-72 (106)
102 2bwf_A Ubiquitin-like protein 32.5 66 0.0023 19.7 4.2 35 90-124 14-48 (77)
103 1sjq_A Polypyrimidine tract-bi 32.5 70 0.0024 22.2 4.7 51 92-147 20-70 (105)
104 2g4b_A Splicing factor U2AF 65 32.3 1.2E+02 0.0042 20.8 7.5 57 90-148 96-155 (172)
105 2lkz_A RNA-binding protein 5; 31.5 41 0.0014 22.5 3.2 55 92-146 13-70 (95)
106 2adc_A Polypyrimidine tract-bi 31.5 76 0.0026 23.7 5.1 52 90-145 34-88 (229)
107 2ghp_A U4/U6 snRNA-associated 31.1 55 0.0019 25.1 4.3 50 96-146 125-176 (292)
108 2yh0_A Splicing factor U2AF 65 30.9 1.4E+02 0.0047 21.0 7.0 51 95-147 121-174 (198)
109 1yx5_B Ubiquitin; proteasome, 30.2 74 0.0025 20.9 4.3 36 89-124 10-45 (98)
110 2hgn_A Heterogeneous nuclear r 29.7 16 0.00053 26.6 0.8 46 96-144 54-101 (139)
111 2jrs_A RNA-binding protein 39; 29.6 96 0.0033 20.6 4.9 50 95-146 33-85 (108)
112 3sde_A Paraspeckle component 1 29.6 79 0.0027 24.2 5.0 51 96-148 104-156 (261)
113 1why_A Hypothetical protein ri 29.1 1E+02 0.0035 19.6 4.8 52 91-147 20-71 (97)
114 1sif_A Ubiquitin; hydrophobic 28.3 70 0.0024 20.8 3.9 36 89-124 19-54 (88)
115 3vdz_A Ubiquitin-40S ribosomal 28.2 94 0.0032 21.3 4.7 36 89-124 45-80 (111)
116 2qfj_A FBP-interacting repress 28.1 1.1E+02 0.0039 21.8 5.4 53 93-147 130-185 (216)
117 2dgs_A DAZ-associated protein 27.7 74 0.0025 20.4 3.9 48 95-144 17-67 (99)
118 2uyz_B Small ubiquitin-related 27.5 1E+02 0.0035 19.1 4.5 35 89-123 13-47 (79)
119 1wf0_A TDP-43, TAR DNA-binding 27.3 29 0.00098 22.0 1.7 47 93-143 10-56 (88)
120 2klc_A Ubiquilin-1; ubiquitin- 27.3 1.1E+02 0.0039 20.5 4.9 35 90-124 35-69 (101)
121 2x1f_A MRNA 3'-END-processing 27.2 1.1E+02 0.0038 19.4 4.7 49 96-146 10-61 (96)
122 3zzp_A TS9, ribosomal protein 27.2 64 0.0022 21.5 3.5 23 91-113 47-69 (77)
123 1wx7_A Ubiquilin 3; ubiquitin- 27.0 1.1E+02 0.0037 20.6 4.8 34 91-124 28-61 (106)
124 1wx8_A Riken cDNA 4931431F19; 26.6 96 0.0033 20.2 4.4 35 90-124 27-61 (96)
125 2hj8_A Interferon-induced 17 k 26.2 1.1E+02 0.0038 19.7 4.5 36 89-124 14-49 (88)
126 1b7f_A Protein (SXL-lethal pro 26.0 1.2E+02 0.0039 20.7 4.9 54 92-147 93-149 (168)
127 3p5t_L Cleavage and polyadenyl 26.0 1.2E+02 0.0041 19.1 4.7 53 92-145 5-61 (90)
128 2cqh_A IGF-II mRNA-binding pro 25.6 75 0.0026 20.1 3.6 51 91-147 11-62 (93)
129 1p1t_A Cleavage stimulation fa 25.6 1.3E+02 0.0046 19.1 5.0 54 91-146 11-67 (104)
130 1cqm_A Ribosomal protein S6; a 25.2 1.4E+02 0.0048 20.4 5.1 33 91-123 5-43 (101)
131 2l7r_A Ubiquitin-like protein 25.1 79 0.0027 20.9 3.7 35 90-124 28-62 (93)
132 3lqv_A PRE-mRNA branch site pr 25.0 1.2E+02 0.004 20.0 4.6 51 93-145 13-63 (115)
133 1yqb_A Ubiquilin 3; structural 24.4 1.3E+02 0.0044 20.2 4.8 34 91-124 33-66 (100)
134 2kxn_B Transformer-2 protein h 24.3 84 0.0029 21.8 3.9 54 92-147 50-106 (129)
135 1ufw_A Synaptojanin 2; RNP dom 24.0 88 0.003 22.0 3.9 38 103-147 39-76 (95)
136 2jwn_A Embryonic polyadenylate 24.0 1.6E+02 0.0055 19.5 5.7 53 90-144 38-93 (124)
137 2cqb_A Peptidyl-prolyl CIS-tra 24.0 86 0.0029 20.1 3.7 52 93-146 17-71 (102)
138 2cq1_A PTB-like protein L; RRM 23.8 78 0.0027 21.3 3.5 52 91-147 16-69 (101)
139 1wg1_A KIAA1579 protein, homol 23.2 38 0.0013 21.5 1.7 47 93-145 10-56 (88)
140 1v5o_A 1700011N24RIK protein; 23.0 1.1E+02 0.0038 20.5 4.2 34 90-123 22-55 (102)
141 2kk8_A Uncharacterized protein 23.0 1.4E+02 0.0048 19.3 4.6 36 89-124 20-55 (84)
142 1j8c_A Ubiquitin-like protein 22.9 1.4E+02 0.0049 21.0 5.0 35 90-124 42-76 (125)
143 2ki2_A SS-DNA binding protein 22.6 1.5E+02 0.005 18.4 5.2 53 92-147 5-60 (90)
144 3m62_B UV excision repair prot 22.4 68 0.0023 21.8 3.0 36 89-124 11-46 (106)
145 1wf1_A RNA-binding protein RAL 22.4 1.1E+02 0.0038 20.0 4.1 45 96-147 35-80 (110)
146 3n9u_C Cleavage and polyadenyl 22.2 2E+02 0.007 20.6 5.8 54 91-145 58-115 (156)
147 2dgx_A KIAA0430 protein; RRM d 22.1 1.2E+02 0.0041 19.4 4.1 53 91-145 10-68 (96)
148 2db1_A Heterogeneous nuclear r 21.5 73 0.0025 21.6 3.0 53 91-144 18-76 (118)
149 2kd0_A LRR repeats and ubiquit 21.4 96 0.0033 20.1 3.5 36 89-124 21-56 (85)
150 2ojr_A Ubiquitin; lanthide-bin 21.4 1.4E+02 0.0046 20.3 4.4 36 89-124 45-80 (111)
151 2e5i_A Heterogeneous nuclear r 20.9 1.7E+02 0.0057 20.7 4.9 45 97-145 34-78 (124)
152 1wy8_A NP95-like ring finger p 20.8 1.4E+02 0.0049 18.9 4.2 35 90-124 19-54 (89)
153 2j76_E EIF-4B, EIF4B, eukaryot 20.7 28 0.00095 22.8 0.6 48 95-145 26-77 (100)
154 3u5c_Y RP50, 40S ribosomal pro 20.5 2.7E+02 0.0092 20.7 7.2 62 84-149 16-85 (135)
155 2khc_A Testis-specific RNP-typ 20.5 1.1E+02 0.0039 20.1 3.8 55 91-147 41-100 (118)
No 1
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=100.00 E-value=1.9e-69 Score=423.27 Aligned_cols=151 Identities=85% Similarity=1.149 Sum_probs=121.2
Q ss_pred CCCCCCCCCCCChhH-HHHHHHHhhhcccCcccceeeeccccccCCCccCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 031815 1 MAPPKGETKKADPKV-QALKTAKAVKSGRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTT 79 (152)
Q Consensus 1 m~~~~~~~~~~~~~a-ka~kakkavlkg~~~~~~~k~~~s~~f~~pktl~~~r~pky~rk~~p~~~kld~~~IIk~Pl~T 79 (152)
|||++++ |++++++ |||+|+||||||+|||+++++|+|++|+||+||+++|+|+|||+|+|+||+||+|+||++|++|
T Consensus 1 m~~~~~~-~~a~aka~ka~kakkavlkg~~~~~~~k~~~s~~f~~pktl~l~r~pkyp~ks~p~~~kmd~~~IIk~PliT 79 (152)
T 3iz5_X 1 MAPKAAV-KKADGKTQQALKVAKAVKSGSIKRKSKKIRTSVTFHRPKTLKKARDPKYPRVSAPGRNKLDQYQILKYPLTT 79 (152)
T ss_dssp -------------------------------CCCHHHHHHHHHTCSSCCCCCCCCCCCCSSCCCCCCCCCCCSEEEECCS
T ss_pred CCCCCCC-cccchhhHHHHHHHHHHhccccccccccccCcccccCccccccccCCCCCcccCCCCCcCcHHHHHhhCCcC
Confidence 8998765 9999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcCCeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHHHHhhcCC
Q 031815 80 ESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 152 (152)
Q Consensus 80 Ekamk~~E~~NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~KKAyV~L~~d~daldvankigii 152 (152)
|+||+++|++|+|+|+||++|||+|||+|||+||||+|.+|||+|+|+|||||||+|++|||||||||+||||
T Consensus 80 EKa~~~~E~~N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnkiGii 152 (152)
T 3iz5_X 80 ESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANKIGII 152 (152)
T ss_dssp HHHHHHHHHHSEEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHGGGCCC
T ss_pred HHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHHHHhhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997
No 2
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=100.00 E-value=3.8e-67 Score=406.49 Aligned_cols=139 Identities=55% Similarity=0.829 Sum_probs=120.2
Q ss_pred hHHHHHHHHhhhcccCcccceeeeccccccCCCccCCCCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhcCCeEE
Q 031815 14 KVQALKTAKAVKSGRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLV 93 (152)
Q Consensus 14 ~aka~kakkavlkg~~~~~~~k~~~s~~f~~pktl~~~r~pky~rk~~p~~~kld~~~IIk~Pl~TEkamk~~E~~Ntlv 93 (152)
++|||+|+||||||+|||+++++|+|++|+||+||+|+|+|+|||+|+|+||+||+|+||++|++||+||+++|++|+|+
T Consensus 4 ~~ka~kakkavlkg~~~~~~~k~~~s~~f~~pktl~l~r~pkyp~ks~p~~~kld~~~IIk~PliTEKa~~~~E~~N~~v 83 (142)
T 3u5e_X 4 SAKATAAKKAVVKGTNGKKALKVRTSATFRLPKTLKLARAPKYASKAVPHYNRLDSYKVIEQPITSETAMKKVEDGNILV 83 (142)
T ss_dssp ------------------CCCCCCSCSCCCCCCCCCCCCCCSSCSSSSCCCCTTCHHHHEEEECCCHHHHHHHHHHCEEE
T ss_pred hhHHHHHHHHHhccCCcccccccccCccccCccccccccCCCCCcccCCCCCCCCHHHhhhcCCcCHHHHHHHHhCCEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHHHHhhcCC
Q 031815 94 FIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 152 (152)
Q Consensus 94 F~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~KKAyV~L~~d~daldvankigii 152 (152)
|+||++|||+|||+|||+||||+|.+|||+|+|+|||||||+|++|||||||||+||||
T Consensus 84 F~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnkigii 142 (142)
T 3u5e_X 84 FQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIANRIGYI 142 (142)
T ss_dssp EEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHHHHHTCC
T ss_pred EEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999997
No 3
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=100.00 E-value=8.6e-66 Score=401.75 Aligned_cols=143 Identities=47% Similarity=0.683 Sum_probs=117.3
Q ss_pred CCCChhHHHHHHHHhhhcccCcccceeeeccccccCCCccCCCCCCCCCCCCCCCCC---CCCccccccccccchhhhhh
Q 031815 9 KKADPKVQALKTAKAVKSGRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRN---KLDHYQILKYPLTTESAMKK 85 (152)
Q Consensus 9 ~~~~~~aka~kakkavlkg~~~~~~~k~~~s~~f~~pktl~~~r~pky~rk~~p~~~---kld~~~IIk~Pl~TEkamk~ 85 (152)
.++++++|||+|+||||||+| |+++++|+|++|+||+||+|+|+|+|||+|+|+|| +||+|+||++|++||+||++
T Consensus 5 ~~~~ak~ka~kakkavlkg~~-~~~~k~~~s~~f~~pktl~l~r~pkyp~ks~p~~~~~~kld~y~IIk~PliTEKa~~~ 83 (150)
T 4a17_R 5 NKTQAVNKAKNTAKVAKKGSS-ITKHKTYTGVRFFRPKTLQLAKAPKYSRTVRAHLKVSGHLDNHSVVKTPLTTEKAMKK 83 (150)
T ss_dssp --------------------------CCCSSSBCCCCCCCCCCCCCSSCSSHHHHTTCCCCCCHHHHEEEECCSHHHHHH
T ss_pred cchhHHHHHHHHHHHHhccCC-CCcceecCCccccCccccccccCCCCCCcccCCCCccccCCHHHhhhccccCHHHHHH
Confidence 356778999999999999998 57799999999999999999999999999999999 99999999999999999999
Q ss_pred hhcCCeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHHHHhhcCC
Q 031815 86 IEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 152 (152)
Q Consensus 86 ~E~~NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~KKAyV~L~~d~daldvankigii 152 (152)
+|++|+|+|+||++|||+|||+|||+||||+|.+|||+|+|+|||||||+|++|||||||||+||||
T Consensus 84 ~E~~N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvAnkiGii 150 (150)
T 4a17_R 84 MEDENTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLANKIGLI 150 (150)
T ss_dssp HHHSSEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHHHHHTCC
T ss_pred HHhCCEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHHhhccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999997
No 4
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1.5e-65 Score=402.67 Aligned_cols=152 Identities=72% Similarity=1.015 Sum_probs=77.7
Q ss_pred CCCCCC----CCCCCChhHHHHHHHHhhhcccCcccceeeeccccccCCCccCCCCCCCCCCCCCCCCCCCCcccccccc
Q 031815 1 MAPPKG----ETKKADPKVQALKTAKAVKSGRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYP 76 (152)
Q Consensus 1 m~~~~~----~~~~~~~~aka~kakkavlkg~~~~~~~k~~~s~~f~~pktl~~~r~pky~rk~~p~~~kld~~~IIk~P 76 (152)
|||+++ ++|++++++||++|+|+||||+|+|+.+|+|+|++|+||+||+++|+|+|||+|+|++|+||+|+||++|
T Consensus 1 m~~k~~k~~~~~p~~~~~~ka~kakk~v~kg~~~~~~~k~~~s~~f~~pktl~l~r~pkyprks~p~~~kmd~~~iIk~P 80 (156)
T 2zkr_s 1 MAPKAKKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFP 80 (156)
T ss_dssp ---------------------------------------------------------------------------CEEEE
T ss_pred CCCcccccCCCccchhHHHHHHHHHHHHHhccCCccceeeccccccCCCcccccccCCCCCcccCCCcccCCHHHhHhcc
Confidence 777654 4789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhhhcCCeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHHHHhhcCC
Q 031815 77 LTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 152 (152)
Q Consensus 77 l~TEkamk~~E~~NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~KKAyV~L~~d~daldvankigii 152 (152)
++||+||+++|++|+|+|+||++|||+|||+|||+||||+|.+|||+|+++|||||||+|++|++||||||+||||
T Consensus 81 liTEKa~~~~E~~n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~~KKAiVtL~~g~~aid~~~kiGii 156 (156)
T 2zkr_s 81 LTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156 (156)
T ss_dssp CCSHHHHHHHHHHCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSSCEEEEEEECTTSCHHHHHHHC---
T ss_pred cccHHHHHHHHhCCcEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEECCCCcHHHHHHhccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997
No 5
>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=3.7e-47 Score=306.08 Aligned_cols=111 Identities=50% Similarity=0.813 Sum_probs=84.3
Q ss_pred eeccccccCCCccCCCCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhcCCeEEEEEecCCCHHHHHHHHHhHhCC
Q 031815 36 IRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDI 115 (152)
Q Consensus 36 ~~~s~~f~~pktl~~~r~pky~rk~~p~~~kld~~~IIk~Pl~TEkamk~~E~~NtlvF~Vd~kAnK~qIKqAvekly~V 115 (152)
.++|++|+||+||+++|+|+|||+ +||+|+||++|++|||||+++|++|+|+|+||++|||+|||+|||+||||
T Consensus 84 ~~~s~~F~rPktl~l~r~pKyprk------kMd~ydIIk~PvITEKAmkliE~nNkyvF~Vd~kANK~QIKqAVEkLFdV 157 (198)
T 3bbo_V 84 TTEEAATSQPKTSKKAKKLKYPRR------ILDVYQILQSPIITEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGV 157 (198)
T ss_dssp --------------------------------CCCCCBCCCCCCHHHHHHHHTSCEECCEECTTCCHHHHHHTTTTTSCC
T ss_pred cccceeeCCCcccccccCCCCccc------cCCHhheeeccccCHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHhCC
Confidence 467999999999999999999998 89999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEEeeCCCCeeeEEEEcCCCCcHHHHHHhhcCC
Q 031815 116 QAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 152 (152)
Q Consensus 116 kV~kVNTli~~~g~KKAyV~L~~d~daldvankigii 152 (152)
+|.+|||+++++|||||||+|++|++|||+||+||||
T Consensus 158 KV~kVNTln~~gg~KKAyVtLaeG~~AID~anKIGii 194 (198)
T 3bbo_V 158 KVRKVNTLIRPDGTKKAYIMLNKEYNASELAKKIGIF 194 (198)
T ss_dssp CEEECCCEEETTTEEECCEEECTTTCTTTHHHHCCCC
T ss_pred ceeEEEeeEcCCCeEEEEEEeCCCCchHHHHHhcccc
Confidence 9999999999999999999999999999999999997
No 6
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.2e-42 Score=249.68 Aligned_cols=86 Identities=47% Similarity=0.804 Sum_probs=83.3
Q ss_pred CCccccccccccchhhhhhhhcCCeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHHH
Q 031815 67 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVA 146 (152)
Q Consensus 67 ld~~~IIk~Pl~TEkamk~~E~~NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~KKAyV~L~~d~daldva 146 (152)
||+|+||++|++|||||+++|++|+|+|+||++|||+|||+|||++|||+|.+|||+++|+|||||||+|++||+|+|||
T Consensus 1 md~~~iIk~P~iTEKa~~~~e~~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva 80 (86)
T 3j21_T 1 MDPYKVIIRPVVTEKAISLIEKENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVA 80 (86)
T ss_dssp --CCCCEEECCCSHHHHHHHHTSCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHH
T ss_pred CChHHhhhccccCHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCC
Q 031815 147 NKIGII 152 (152)
Q Consensus 147 nkigii 152 (152)
||||||
T Consensus 81 ~kigi~ 86 (86)
T 3j21_T 81 ARLGLF 86 (86)
T ss_dssp HHSSCC
T ss_pred HhhccC
Confidence 999997
No 7
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=100.00 E-value=1.7e-39 Score=232.65 Aligned_cols=84 Identities=44% Similarity=0.659 Sum_probs=80.1
Q ss_pred ccccccccccchhhhhhhhcCCeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHHHHh
Q 031815 69 HYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANK 148 (152)
Q Consensus 69 ~~~IIk~Pl~TEkamk~~E~~NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~KKAyV~L~~d~daldvank 148 (152)
||+||++|++|||||+++|++|+|+|+||++|||+|||+|||++|||+|.+|||+++|+|||||||+|++|++|+|+|||
T Consensus 2 ~~~iIk~P~iTEKa~~~~e~~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~aid~~~k 81 (85)
T 1vq8_S 2 SWDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVASR 81 (85)
T ss_dssp CCCSEEEECCSHHHHHHHHHSCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHTT
T ss_pred CcceeeccccCHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCcHHHHHHh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCC
Q 031815 149 IGII 152 (152)
Q Consensus 149 igii 152 (152)
||||
T Consensus 82 ig~~ 85 (85)
T 1vq8_S 82 IGVF 85 (85)
T ss_dssp C---
T ss_pred hCCC
Confidence 9996
No 8
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=99.98 E-value=4.8e-33 Score=201.72 Aligned_cols=78 Identities=28% Similarity=0.463 Sum_probs=74.2
Q ss_pred CccccccccccchhhhhhhhcCCeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCC-------------CCeeeEEE
Q 031815 68 DHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRP-------------DGTKKAYV 134 (152)
Q Consensus 68 d~~~IIk~Pl~TEkamk~~E~~NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~-------------~g~KKAyV 134 (152)
|+|+||++|++||+||.++|+ |+|+|+||++|||+|||+|||+||||+|.+|||++++ +|||||||
T Consensus 1 ~~~~iI~~P~iTEKa~~~~e~-n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK~kR~g~~~G~~~~~KKA~V 79 (92)
T 3tve_T 1 TAYDVILAPVLSEKAYAGFAE-GKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKRLGRYLGKRPDRKKAIV 79 (92)
T ss_dssp CHHHHEEEECCSHHHHTTTTT-TEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCCEEESSSCEEECCCEEEEEE
T ss_pred ChhheecccccCHHHHHHhhC-CEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCceeeeccccccCCCceEEEE
Confidence 789999999999999999998 9999999999999999999999999999999999999 59999999
Q ss_pred EcCCCCcHHHHHH
Q 031815 135 RLTPDSDALDVAN 147 (152)
Q Consensus 135 ~L~~d~daldvan 147 (152)
+|++| ++||+..
T Consensus 80 tL~~g-~~Id~f~ 91 (92)
T 3tve_T 80 QVAPG-QKIEALE 91 (92)
T ss_dssp EECTT-CCCTTTC
T ss_pred EcCCC-CcccCCC
Confidence 99999 5688753
No 9
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=99.97 E-value=1.1e-32 Score=200.77 Aligned_cols=81 Identities=30% Similarity=0.499 Sum_probs=75.9
Q ss_pred CCccccccccccchhhhhhhhcCCeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCC-------------CeeeEE
Q 031815 67 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-------------GTKKAY 133 (152)
Q Consensus 67 ld~~~IIk~Pl~TEkamk~~E~~NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~-------------g~KKAy 133 (152)
||+|+||++|++||+||.++|+|+ |+|+||++|||+|||+|||++|||+|.+|||+++++ +|||||
T Consensus 1 m~~~~iI~~PviTEKs~~~~e~n~-y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~gK~kR~g~~~G~~~~~KKAi 79 (95)
T 2zjr_Q 1 MSHYDILQAPVISEKAYSAMERGV-YSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGKRKRVGRFIGQRNDRKKAI 79 (95)
T ss_dssp -CCSSSCCEECCTHHHHHHHTTTC-CEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCCCCSSSSCCCCCCCBEEEE
T ss_pred CChHhceeccccCHHHHHHHHCCE-EEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCCccceeccccccCCCcEEEE
Confidence 789999999999999999999855 999999999999999999999999999999999996 799999
Q ss_pred EEcCCCCcHHHHHHhh
Q 031815 134 VRLTPDSDALDVANKI 149 (152)
Q Consensus 134 V~L~~d~daldvanki 149 (152)
|+|++|++ ||+++.+
T Consensus 80 VtL~~g~~-id~~~~~ 94 (95)
T 2zjr_Q 80 VRLAEGQS-IEALAGQ 94 (95)
T ss_dssp EECCSSCC-CSSTTTC
T ss_pred EEeCCCCe-eecccCC
Confidence 99999999 9998753
No 10
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=99.97 E-value=5.7e-32 Score=196.39 Aligned_cols=76 Identities=34% Similarity=0.499 Sum_probs=72.8
Q ss_pred CCCccccccccccchhhhhhhhcCCeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCC-------------CCeeeE
Q 031815 66 KLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRP-------------DGTKKA 132 (152)
Q Consensus 66 kld~~~IIk~Pl~TEkamk~~E~~NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~-------------~g~KKA 132 (152)
..++|+||++|++||+||.++|++|+|+|+||++|||+|||+|||+||||+|.+|||++++ +|||||
T Consensus 4 ~~~~~~iIk~P~iTEKa~~~~e~~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~kR~g~~~G~~~~~KKA 83 (93)
T 3r8s_T 4 EERLLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKA 83 (93)
T ss_dssp HHHHHHHEEEECCSHHHHHHHHTTSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCBCCSSSSCCBCCCEEEE
T ss_pred hhhHHhhhhccccCHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCceeeeCCccccCCCcEEE
Confidence 4578999999999999999999999999999999999999999999999999999999988 589999
Q ss_pred EEEcCCCCc
Q 031815 133 YVRLTPDSD 141 (152)
Q Consensus 133 yV~L~~d~d 141 (152)
||+|++|++
T Consensus 84 iVtL~~g~~ 92 (93)
T 3r8s_T 84 YVTLKEGQN 92 (93)
T ss_dssp EEECCSCCC
T ss_pred EEEcCCcCC
Confidence 999999986
No 11
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.48 E-value=1.6 Score=32.07 Aligned_cols=56 Identities=13% Similarity=0.108 Sum_probs=42.1
Q ss_pred CCeEEEEE--ecC-CCHHHHHHHHHhHhCCceeeEEEeeCCCCeeeEEEEcCC-CCcHHHHHHhh
Q 031815 89 NNTLVFIV--DIR-ADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTP-DSDALDVANKI 149 (152)
Q Consensus 89 ~NtlvF~V--d~k-AnK~qIKqAvekly~VkV~kVNTli~~~g~KKAyV~L~~-d~daldvanki 149 (152)
.+.++|+- +.. .++.+|+++|+. || +|..|.... |..-+||++.. ..+|.+.+.++
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~-~G-~V~~Vd~~~---g~~tgfVrf~~~~~~A~~av~~l 76 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSN-HG-EIKWIDFVR---GAKEGIILFKEKAKEALGKAKDA 76 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCS-SC-CEEEEECCT---TCSEEEEEESSCHHHHHHHHHHT
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHh-cC-CEEEEEEec---CCCEEEEEECCChHHHHHHHHHh
Confidence 36777776 556 889999999988 77 677776543 44569999998 56788877765
No 12
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.23 E-value=9.2 Score=25.12 Aligned_cols=55 Identities=13% Similarity=0.195 Sum_probs=38.9
Q ss_pred eEEEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCee--eEEEEcCCCCcHHHHH
Q 031815 91 TLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTK--KAYVRLTPDSDALDVA 146 (152)
Q Consensus 91 tlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~K--KAyV~L~~d~daldva 146 (152)
-++--++...+..+|++.++..|| .|..|..+..+.|.- -|||.+....+|....
T Consensus 12 l~V~nLp~~~t~~~l~~~F~~~~G-~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~ 68 (104)
T 2dhg_A 12 LFVGDLTPDVDDGMLYEFFVKVYP-SCRGGKVVLDQTGVSKGYGFVKFTDELEQKRAL 68 (104)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHCT-TEEEEEEEECTTCCEEEEEEEEESCHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHHhCC-CeEEEEEEECCCCCccceEEEEECCHHHHHHHH
Confidence 344446678999999999999777 467777766555433 4899998776655443
No 13
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=69.32 E-value=15 Score=25.30 Aligned_cols=53 Identities=15% Similarity=0.122 Sum_probs=38.9
Q ss_pred EEEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCee--eEEEEcCCCCcHHHHH
Q 031815 92 LVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTK--KAYVRLTPDSDALDVA 146 (152)
Q Consensus 92 lvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~K--KAyV~L~~d~daldva 146 (152)
++--++..++..+|++.++. || .|..|..+..++|.- -|||.+....+|....
T Consensus 4 ~V~nlp~~~t~~~l~~~f~~-~G-~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~ 58 (166)
T 3md3_A 4 YVGNLDKAITEDILKQYFQV-GG-PIANIKIMIDKNNKNVNYAFVEYHQSHDANIAL 58 (166)
T ss_dssp EEEEEETTCCHHHHHHHHGG-GS-CEEEEEEECCCC-CCEEEEEEEESSHHHHHHHH
T ss_pred EECCCCCcCCHHHHHHHHHh-cC-CeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHH
Confidence 45567789999999999987 56 577888876665533 4999998776665544
No 14
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=64.84 E-value=24 Score=22.53 Aligned_cols=51 Identities=10% Similarity=0.061 Sum_probs=36.5
Q ss_pred EEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCe--eeEEEEcCCCCcHHHHH
Q 031815 94 FIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGT--KKAYVRLTPDSDALDVA 146 (152)
Q Consensus 94 F~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~--KKAyV~L~~d~daldva 146 (152)
--++...+..+|++.++. || .|..|..+..++|. --|||.+....+|....
T Consensus 22 ~nlp~~~~~~~l~~~F~~-~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~ 74 (95)
T 2ywk_A 22 GNLEARVREEILYELFLQ-AG-PLTKVTICKDREGKPKSFGFVCFKHPESVSYAI 74 (95)
T ss_dssp ECCCTTCCHHHHHHHHGG-GS-CEEEEEEEECTTSCEEEEEEEEESSTHHHHHHH
T ss_pred ECCCCCCCHHHHHHHHHh-cC-CEEEEEEEECCCCCCceEEEEEECCHHHHHHHH
Confidence 335668999999999988 45 57777776655543 25999998777765543
No 15
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.17 E-value=18 Score=23.54 Aligned_cols=53 Identities=17% Similarity=0.260 Sum_probs=36.7
Q ss_pred EEEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCe--eeEEEEcCCCCcHHHHH
Q 031815 92 LVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGT--KKAYVRLTPDSDALDVA 146 (152)
Q Consensus 92 lvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~--KKAyV~L~~d~daldva 146 (152)
++--++..++..+|++.++. || .|..|..+..+.|. --|||.+....+|....
T Consensus 21 ~v~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~ 75 (100)
T 2do4_A 21 FISGLPFSCTKEELEEICKA-HG-TVKDLRLVTNRAGKPKGLAYVEYENESQASQAV 75 (100)
T ss_dssp EEESCCTTCCHHHHHHHHTT-TS-CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHh-CC-CeEEEEEEECCCCCEEeEEEEEECCHHHHHHHH
Confidence 33345668999999999987 55 47777776655543 35999998766655443
No 16
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=59.69 E-value=30 Score=22.41 Aligned_cols=52 Identities=10% Similarity=0.164 Sum_probs=35.2
Q ss_pred CeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHHH
Q 031815 90 NTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVA 146 (152)
Q Consensus 90 NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~KKAyV~L~~d~daldva 146 (152)
++-+|+-....+..+|++.++. || .|..|.. ....|+ |||.+....+|....
T Consensus 15 ~~~l~V~n~~~t~~~l~~~F~~-~G-~i~~v~i-~~~~g~--afV~f~~~~~a~~Ai 66 (97)
T 1x5p_A 15 GNTLYVYGEDMTPTLLRGAFSP-FG-NIIDLSM-DPPRNC--AFVTYEKMESADQAV 66 (97)
T ss_dssp CSEEEEECSSCCHHHHHHHHTT-TS-CEEEEEE-ETTTTE--EEEEESSHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHhh-CC-CEEEEEe-cCCCCE--EEEEECCHHHHHHHH
Confidence 3445666678999999998877 44 4556654 355564 999998666655443
No 17
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.67 E-value=32 Score=22.04 Aligned_cols=54 Identities=4% Similarity=0.011 Sum_probs=36.3
Q ss_pred CeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEeeC-CCCeeeEEEEcCCCCcHHHHH
Q 031815 90 NTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIR-PDGTKKAYVRLTPDSDALDVA 146 (152)
Q Consensus 90 NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~-~~g~KKAyV~L~~d~daldva 146 (152)
.-++--++...+..+|++.+... | .|..|..++. +.... |||.+....+|....
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~-G-~v~~~~~i~~~~~~~~-afV~f~~~~~a~~Ai 71 (96)
T 2e44_A 17 KLQIRNIPPHLQWEVLDSLLVQY-G-VVESCEQVNTDSETAV-VNVTYSSKDQARQAL 71 (96)
T ss_dssp CEEEEEECSSSCHHHHHHHHHHH-S-CEEEEEEECCSSSSEE-EEEEESSHHHHHHHH
T ss_pred EEEEEcCCCCCCHHHHHHHHHhc-C-CeEEEEEeecCCCCCE-EEEEECCHHHHHHHH
Confidence 45666778899999999999874 5 3666643333 33323 999998776655443
No 18
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.27 E-value=18 Score=24.00 Aligned_cols=55 Identities=18% Similarity=0.229 Sum_probs=37.6
Q ss_pred eEEEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCe--eeEEEEcCCCCcHHHHHH
Q 031815 91 TLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGT--KKAYVRLTPDSDALDVAN 147 (152)
Q Consensus 91 tlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~--KKAyV~L~~d~daldvan 147 (152)
-++--++...+..+|++.++. || .|..|..+..++|. --|||.+....+|.....
T Consensus 18 l~V~nlp~~~~~~~l~~~f~~-~G-~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~ 74 (114)
T 2do0_A 18 VFVANLDYKVGWKKLKEVFSM-AG-VVVRADILEDKDGKSRGIGTVTFEQSIEAVQAIS 74 (114)
T ss_dssp EEEESCCTTCCHHHHHHHHTT-TS-CEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHH
Confidence 334445678899999998886 45 67777777665553 258999987666554433
No 19
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.64 E-value=19 Score=25.64 Aligned_cols=52 Identities=4% Similarity=0.068 Sum_probs=36.7
Q ss_pred eEEEE----EecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHHHH
Q 031815 91 TLVFI----VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVAN 147 (152)
Q Consensus 91 tlvF~----Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~KKAyV~L~~d~daldvan 147 (152)
.-.|+ .+...+..++++.+++ || .|..|... ...| =|||++....+|.+...
T Consensus 26 ~~L~V~Ng~L~~~~te~~L~~~F~~-fG-~v~~v~i~-~~rg--faFV~f~~~~~A~~Ai~ 81 (114)
T 2cq2_A 26 QSLVVANGGLGNGVSRNQLLPVLEK-CG-LVDALLMP-PNKP--YSFARYRTTEESKRAYV 81 (114)
T ss_dssp SEEEEETCTGGGTCCHHHHHHHHHH-HS-CEEEEECC-TTCS--CEEEEESSHHHHHHHHH
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHh-cC-CeEEEEEe-CCCC--EEEEEECCHHHHHHHHH
Confidence 33566 5668999999999988 68 67777543 2234 49999998777665543
No 20
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.30 E-value=20 Score=24.62 Aligned_cols=46 Identities=17% Similarity=0.111 Sum_probs=33.7
Q ss_pred cCCCHHHHHHHHHhHhCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHHHH
Q 031815 98 IRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVAN 147 (152)
Q Consensus 98 ~kAnK~qIKqAvekly~VkV~kVNTli~~~g~KKAyV~L~~d~daldvan 147 (152)
..++..+|++.+++ || +|..|..+-.+.|+ |||.+....+|.+...
T Consensus 27 ~~~te~~L~~~F~~-~G-~V~~v~i~~~~rGf--aFVeF~~~~~A~~Ai~ 72 (100)
T 2d9o_A 27 GGYSKDVLLRLLQK-YG-EVLNLVLSSKKPGT--AVVEFATVKAAELAVQ 72 (100)
T ss_dssp CSCCHHHHHHHHHT-TS-CEEEEEEESSSSSE--EEEEESCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh-cC-CEEEEEEccCCCCE--EEEEECCHHHHHHHHH
Confidence 46899999999987 56 57777766555565 9999987766655433
No 21
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=54.40 E-value=21 Score=23.04 Aligned_cols=49 Identities=10% Similarity=0.173 Sum_probs=33.4
Q ss_pred EecCCCHHHHHHHHHhHhCCceeeEEEeeCC-CCe--eeEEEEcCCCCcHHHHH
Q 031815 96 VDIRADKKKIKDAVKKMYDIQAKKVNTLIRP-DGT--KKAYVRLTPDSDALDVA 146 (152)
Q Consensus 96 Vd~kAnK~qIKqAvekly~VkV~kVNTli~~-~g~--KKAyV~L~~d~daldva 146 (152)
++...+..+|++.++. || .|..|..+..+ .|. --|||++....+|....
T Consensus 16 lp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 67 (99)
T 1whw_A 16 LSYTSSEEDLEKLFSA-YG-PLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAY 67 (99)
T ss_dssp CCTTCCHHHHHHHHHT-TS-CEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHh-cC-CEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHH
Confidence 5668999999999987 45 56666655443 222 24999998776655544
No 22
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=54.12 E-value=27 Score=22.67 Aligned_cols=50 Identities=24% Similarity=0.228 Sum_probs=34.0
Q ss_pred EEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHHH
Q 031815 93 VFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVA 146 (152)
Q Consensus 93 vF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~KKAyV~L~~d~daldva 146 (152)
+--++...+..+|++.++.. | .|..|.....+.| -|||.+....+|....
T Consensus 5 V~nLp~~~t~~~l~~~F~~~-G-~i~~v~i~~~~~g--~afV~f~~~~~a~~A~ 54 (101)
T 2hvz_A 5 VGNLGTGAGKGELERAFSYY-G-PLRTVWIARNPPG--FAFVEFEDPRDAEDAV 54 (101)
T ss_dssp EECCCSSCSHHHHHHHHHHH-C-CCSEEEEESSSSS--EEEEECSSHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHhc-C-CeEEEEEeeCCCC--EEEEEECCHHHHHHHH
Confidence 33456688999999999885 4 4566665543345 4999998776655443
No 23
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=53.08 E-value=15 Score=24.02 Aligned_cols=50 Identities=14% Similarity=0.076 Sum_probs=37.3
Q ss_pred CeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCeeeEEEEcCCCCcHH
Q 031815 90 NTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDAL 143 (152)
Q Consensus 90 NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~KKAyV~L~~d~dal 143 (152)
+-++--....++..++++.+++ || .|..|..+....|+ |||.+....+|.
T Consensus 13 ~l~V~~Lp~~~te~~L~~~F~~-~G-~i~~v~i~~~srGf--aFV~F~~~~~A~ 62 (89)
T 3d2w_A 13 KVFVGRCTEDMTAEELQQFFCQ-YG-EVVDVFIPKPFRAF--AFVTFADDKVAQ 62 (89)
T ss_dssp EEEEESCCTTCCHHHHHHHHTT-TS-CEEEEECCSSCCSE--EEEEESCHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHhc-cC-CEEEEEEeeCCCCE--EEEEECCHHHHH
Confidence 3455556778999999999987 56 47778776655675 999998766654
No 24
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=53.04 E-value=9.5 Score=25.05 Aligned_cols=51 Identities=20% Similarity=0.274 Sum_probs=36.0
Q ss_pred EEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCC-Cee--eEEEEcCCCCcHHHH
Q 031815 94 FIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-GTK--KAYVRLTPDSDALDV 145 (152)
Q Consensus 94 F~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~-g~K--KAyV~L~~d~daldv 145 (152)
--++..++..+|++.++. ||..|..|..+..+. |.- =|||.+....+|...
T Consensus 7 ~nLp~~~te~~l~~~F~~-~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~A 60 (91)
T 2lxi_A 7 RMLPQAATEDDIRGQLQS-HGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRW 60 (91)
T ss_dssp ETCCSSCCHHHHHHHHHH-HTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHH-hCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHH
Confidence 345678999999999988 677777777664332 211 399999877666544
No 25
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=52.14 E-value=16 Score=24.62 Aligned_cols=55 Identities=11% Similarity=0.241 Sum_probs=36.4
Q ss_pred eEEEE--EecCCCHHHHHHHHHhHhCCceeeEEEeeCCCC-eeeEEEEcCCCCcHHHHHH
Q 031815 91 TLVFI--VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDG-TKKAYVRLTPDSDALDVAN 147 (152)
Q Consensus 91 tlvF~--Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g-~KKAyV~L~~d~daldvan 147 (152)
+-+|+ ++...+..+|++.++++ | .|..|..+...++ .--|||.+....+|.....
T Consensus 30 ~~l~V~nLp~~~te~~l~~~F~~~-G-~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~ 87 (109)
T 2err_A 30 KRLHVSNIPFRFRDPDLRQMFGQF-G-KILDVEIIFNERGSKGFGFVTFENSADADRARE 87 (109)
T ss_dssp CEEEEESCCTTCCHHHHHHHGGGT-C-CCSCEEECCBTTBCTTEEEEECCCSHHHHHHHH
T ss_pred CEEEEECCCCcCCHHHHHHHHHhc-C-CEEEEEEEECCCCCceEEEEEECCHHHHHHHHH
Confidence 44455 45688999999999874 4 4566666544432 2259999998877665443
No 26
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=51.99 E-value=29 Score=22.59 Aligned_cols=49 Identities=14% Similarity=0.358 Sum_probs=34.9
Q ss_pred EecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCee--eEEEEcCCCCcHHHHH
Q 031815 96 VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTK--KAYVRLTPDSDALDVA 146 (152)
Q Consensus 96 Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~K--KAyV~L~~d~daldva 146 (152)
++...+..+|++.++. || .|..|..+..+.|.- -|||.+....+|....
T Consensus 23 Lp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai 73 (105)
T 2dnh_A 23 LNKQQSEEDVLRLFQP-FG-VIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAI 73 (105)
T ss_dssp CCTTCCHHHHHHHHTT-TS-CEEEEEEEECSSSCEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHh-cC-CeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHH
Confidence 5668899999998886 45 377787776665533 4999998776655443
No 27
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=51.87 E-value=33 Score=23.72 Aligned_cols=54 Identities=17% Similarity=0.313 Sum_probs=39.1
Q ss_pred eEEEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCeee--EEEEcCCCCcHHHHH
Q 031815 91 TLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKK--AYVRLTPDSDALDVA 146 (152)
Q Consensus 91 tlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~KK--AyV~L~~d~daldva 146 (152)
-++--++...+..+|++.++. ||- |..|..+..++|.-+ |||++....+|....
T Consensus 98 l~v~nl~~~~t~~~l~~~F~~-~G~-i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~ 153 (175)
T 3nmr_A 98 LFIGMISKKCTENDIRVMFSS-FGQ-IEECRILRGPDGLSRGCAFVTFTTRAMAQTAI 153 (175)
T ss_dssp EEEESCCTTCCHHHHHHHHGG-GSC-EEEEEEEECTTSCEEEEEEEEESSHHHHHHHH
T ss_pred EEEcCCCCcCCHHHHHHHHHh-CCC-EEEEEEEECCCCCEEEEEEEEECCHHHHHHHH
Confidence 444456778999999999987 453 778887777666544 999998776665443
No 28
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=51.05 E-value=42 Score=25.94 Aligned_cols=56 Identities=9% Similarity=0.172 Sum_probs=40.4
Q ss_pred eEEEEEecCCCHHHHHHHHHhHhCC-ceeeEEEeeCC-CCee--eEEEEcCCCCcHHHHHH
Q 031815 91 TLVFIVDIRADKKKIKDAVKKMYDI-QAKKVNTLIRP-DGTK--KAYVRLTPDSDALDVAN 147 (152)
Q Consensus 91 tlvF~Vd~kAnK~qIKqAvekly~V-kV~kVNTli~~-~g~K--KAyV~L~~d~daldvan 147 (152)
-||--++..++..+|++.|+. |++ +|..|..+... .|.- =|||.+....+|.....
T Consensus 71 lfVgnL~~~~te~~L~~~F~~-~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~ 130 (229)
T 3q2s_C 71 LYIGNLTWWTTDEDLTEAVHS-LGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMD 130 (229)
T ss_dssp EEEESCCTTCCHHHHHHHHHT-TTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHT
T ss_pred EEEeCCCCCCCHHHHHHHHHH-HCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHH
Confidence 344445678999999999976 676 89899887654 3332 39999998877655443
No 29
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=51.05 E-value=43 Score=20.96 Aligned_cols=51 Identities=18% Similarity=0.283 Sum_probs=35.5
Q ss_pred EEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCC-Cee--eEEEEcCCCCcHHHH
Q 031815 93 VFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-GTK--KAYVRLTPDSDALDV 145 (152)
Q Consensus 93 vF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~-g~K--KAyV~L~~d~daldv 145 (152)
+--++...+..+|++.++. || .|..|..+..+. |.- =|||++....+|...
T Consensus 16 V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A 69 (87)
T 3s7r_A 16 VGGLSWDTSKKDLKDYFTK-FG-EVVDCTIKMDPNTGRSRGFGFILFKDAASVEKV 69 (87)
T ss_dssp EECCCTTCCHHHHHHHHTT-TS-CEEEEEEEECTTTCCEEEEEEEEESSTHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHh-CC-CEEEEEEeecCCCCccccEEEEEECCHHHHHHH
Confidence 3346678999999999876 55 677787765543 332 399999877665443
No 30
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=50.74 E-value=23 Score=24.04 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=36.5
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHHHH
Q 031815 89 NNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVAN 147 (152)
Q Consensus 89 ~NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~KKAyV~L~~d~daldvan 147 (152)
..-+|--++..++..+|++.++. || +|..|..+ .+|+ |||.+....+|.....
T Consensus 17 ~~l~V~nLp~~~t~~~l~~~F~~-~G-~v~~~~i~--~~g~--afV~f~~~~~a~~Ai~ 69 (115)
T 3beg_B 17 NRVVVSGLPPSGSWQDLKDHMRE-AG-DVCYADVY--RDGT--GVVEFVRKEDMTYAVR 69 (115)
T ss_dssp CCEEEEECCSSCCTTHHHHHHGG-GS-CEEEEEEC--TTSE--EEEEESSHHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEe--cCCE--EEEEECCHHHHHHHHH
Confidence 34556667788999999999887 45 56666654 2354 9999987666554433
No 31
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=49.06 E-value=30 Score=21.50 Aligned_cols=51 Identities=14% Similarity=0.118 Sum_probs=34.2
Q ss_pred EEEecCCCHHHHHHHHHhHhCCceeeEEEeeCC-CCee--eEEEEcCCCCcHHHHH
Q 031815 94 FIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRP-DGTK--KAYVRLTPDSDALDVA 146 (152)
Q Consensus 94 F~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~-~g~K--KAyV~L~~d~daldva 146 (152)
--++...+..+|++.++. || .|..|..+..+ .|.. -|||.+....+|....
T Consensus 13 ~nl~~~~~~~~l~~~f~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 66 (85)
T 3mdf_A 13 GGLAEEVDDKVLHAAFIP-FG-DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAI 66 (85)
T ss_dssp ECCCTTCCHHHHHHHHGG-GS-CEEEEECCEETTTTEECSEEEEEESSHHHHHHHH
T ss_pred ECCCCCCCHHHHHHHHhc-cC-CEEEEEEEECCCCCccccEEEEEECCHHHHHHHH
Confidence 335568999999999987 55 56677655432 2332 3999998776655443
No 32
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=48.78 E-value=40 Score=21.35 Aligned_cols=54 Identities=17% Similarity=0.260 Sum_probs=36.9
Q ss_pred eEEEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCC-Ce--eeEEEEcCCCCcHHHHH
Q 031815 91 TLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-GT--KKAYVRLTPDSDALDVA 146 (152)
Q Consensus 91 tlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~-g~--KKAyV~L~~d~daldva 146 (152)
-++--++...+..+|++.++. || .|..|..+..+. |. --|||.+....+|....
T Consensus 18 l~v~nlp~~~t~~~l~~~f~~-~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 74 (95)
T 2cqc_A 18 LGVFGLSLYTTERDLREVFSK-YG-PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAK 74 (95)
T ss_dssp EEEESCCSSCCHHHHHHHHHT-TS-CEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHh-cC-CeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHH
Confidence 344446678999999999988 55 477777765543 22 25999998766655443
No 33
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=48.03 E-value=27 Score=23.04 Aligned_cols=51 Identities=24% Similarity=0.268 Sum_probs=32.7
Q ss_pred EEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHHH
Q 031815 94 FIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVA 146 (152)
Q Consensus 94 F~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~KKAyV~L~~d~daldva 146 (152)
--++...+..+|++.++. |+ .|..|.........--|||.+....+|....
T Consensus 28 ~nLp~~~t~~~l~~~F~~-~G-~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~ 78 (109)
T 1x4a_A 28 GNLPPDIRTKDIEDVFYK-YG-AIRDIDLKNRRGGPPFAFVEFEDPRDAEDAV 78 (109)
T ss_dssp ESCCTTCCHHHHHHHHGG-GS-CEEEEEECCSSSSSCCEEEEESCHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHh-cC-CeEEEEEEECCCCCcEEEEEECCHHHHHHHH
Confidence 335568899999999988 44 3555554332222236999998776655544
No 34
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.85 E-value=39 Score=22.73 Aligned_cols=54 Identities=11% Similarity=0.027 Sum_probs=37.3
Q ss_pred CeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCee--eEEEEcCCCCcHHHH
Q 031815 90 NTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTK--KAYVRLTPDSDALDV 145 (152)
Q Consensus 90 NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~K--KAyV~L~~d~daldv 145 (152)
.-+|--++..++..+|++.++. || .|..|..+..++|.- =|||.+....+|...
T Consensus 13 ~lfV~~Lp~~~te~~L~~~F~~-~G-~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~A 68 (103)
T 1s79_A 13 SVYIKGFPTDATLDDIKEWLED-KG-QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKF 68 (103)
T ss_dssp CEEEECCCTTCCHHHHHHHHHT-SS-CEEEEEEECCCTTSCCCEEEEEESSHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHhh-cC-CEEEEEEEECCCCCCccEEEEEECCHHHHHHH
Confidence 3445556778999999999987 66 577887775443211 399999876555443
No 35
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=46.85 E-value=32 Score=25.91 Aligned_cols=52 Identities=8% Similarity=0.033 Sum_probs=37.8
Q ss_pred EEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHHHH
Q 031815 93 VFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVAN 147 (152)
Q Consensus 93 vF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~KKAyV~L~~d~daldvan 147 (152)
+.-++...+..+|++.++. ||..|..|..+-...| -|||.+....+|....+
T Consensus 156 V~nlp~~~t~~~l~~~f~~-~G~~i~~v~i~~~~~g--~afV~f~~~~~A~~Ai~ 207 (229)
T 2adc_A 156 LSNIPPSVSEEDLKVLFSS-NGGVVKGFKFFQKDRK--MALIQMGSVEEAVQALI 207 (229)
T ss_dssp EECCCTTCCHHHHHHHHHT-TSCCEEEEEECSSSTT--CEEEEESSHHHHHHHHH
T ss_pred EeCCCccCCHHHHHHHHHH-cCCCeeEEEEEECCCc--EEEEEECCHHHHHHHHH
Confidence 3335667899999999988 4878888876543445 69999987776655544
No 36
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=46.84 E-value=36 Score=22.16 Aligned_cols=54 Identities=17% Similarity=0.292 Sum_probs=36.7
Q ss_pred EEEecCCCHHHHHHHHHhHhCCceeeEEEeeCC--CC--eeeEEEEcCCCCcHHHHHHhh
Q 031815 94 FIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRP--DG--TKKAYVRLTPDSDALDVANKI 149 (152)
Q Consensus 94 F~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~--~g--~KKAyV~L~~d~daldvanki 149 (152)
--++...+..+|++.++. || .|..|..+..+ .| .--|||.+....+|......+
T Consensus 21 ~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 78 (107)
T 2cph_A 21 RNIPFQANQREIRELFST-FG-ELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL 78 (107)
T ss_dssp ESCCTTCCHHHHHHHHHT-TS-CEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHH
T ss_pred eCCCCcCCHHHHHHHHHc-cC-CeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHh
Confidence 335678999999999988 55 57777766542 21 124999998777766555443
No 37
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=46.57 E-value=36 Score=24.05 Aligned_cols=66 Identities=9% Similarity=0.164 Sum_probs=40.4
Q ss_pred hhhhhhhhcCCeEEEEEec----CCCHHHHHHHHHhHhCCceeeEEE--eeC-C-CCeeeEEEEcCCCCcHHHHHHhh
Q 031815 80 ESAMKKIEDNNTLVFIVDI----RADKKKIKDAVKKMYDIQAKKVNT--LIR-P-DGTKKAYVRLTPDSDALDVANKI 149 (152)
Q Consensus 80 Ekamk~~E~~NtlvF~Vd~----kAnK~qIKqAvekly~VkV~kVNT--li~-~-~g~KKAyV~L~~d~daldvanki 149 (152)
+....++.. ..++|.|.= ..+|.+|++.+-++|+++..-|=. +.+ - +|.=..|..+ ||.+|.|.++
T Consensus 8 ~~~N~LL~R-ke~~~~v~hp~~~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I---Yds~e~~kk~ 81 (98)
T 2g1d_A 8 KRDNPILKR-KEIKYVLKFDSSRTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI---YADKPSAMLY 81 (98)
T ss_dssp EEECSSSCE-EEEEEEEECCTTSCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE---ESHHHHHHHH
T ss_pred eeecCCcCc-EEEEEEEEeCCCCCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE---ECCHHHHHhh
Confidence 334445544 477776543 569999999999999986543211 111 1 2444444444 6888888765
No 38
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=46.41 E-value=34 Score=21.28 Aligned_cols=53 Identities=15% Similarity=0.199 Sum_probs=35.6
Q ss_pred EEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCC----CeeeEEEEcCCCCcHHHHHH
Q 031815 93 VFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD----GTKKAYVRLTPDSDALDVAN 147 (152)
Q Consensus 93 vF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~----g~KKAyV~L~~d~daldvan 147 (152)
+--++...+..+|++.++. || .|..|..+..++ ..--|||.+....+|.....
T Consensus 9 V~nlp~~~t~~~l~~~F~~-~G-~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 65 (88)
T 4a8x_A 9 IGRLTRNVTKDHIMEIFST-YG-KIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALK 65 (88)
T ss_dssp EECCCTTCCHHHHHHHHHT-TS-CEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHh-CC-CEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHH
Confidence 3346678999999999987 55 566666555442 12259999987766655443
No 39
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=45.78 E-value=50 Score=21.84 Aligned_cols=53 Identities=9% Similarity=0.159 Sum_probs=36.5
Q ss_pred EEEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCC-Cee--eEEEEcCCCCcHHHHH
Q 031815 92 LVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-GTK--KAYVRLTPDSDALDVA 146 (152)
Q Consensus 92 lvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~-g~K--KAyV~L~~d~daldva 146 (152)
+|=-++..++..+|++.++. || .|..|..+..+. |.- =|||.+....+|....
T Consensus 23 fV~nLp~~~te~~L~~~F~~-~G-~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai 78 (99)
T 4fxv_A 23 IVNYLPQNMTQDELRSLFSS-IG-EVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78 (99)
T ss_dssp EEESCCTTCCHHHHHHHHHT-TS-CEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHh-cC-CEEEeEeeecCCCCcccccEEEEECCHHHHHHHH
Confidence 33446678999999999987 55 577777765433 433 3999998776655443
No 40
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.49 E-value=24 Score=25.00 Aligned_cols=56 Identities=16% Similarity=0.213 Sum_probs=38.7
Q ss_pred CeEEEEE--ecCCCHHHHHHHHHhHhCC--ceeeEEEeeCCCCee--eEEEEcCCCCcHHHH
Q 031815 90 NTLVFIV--DIRADKKKIKDAVKKMYDI--QAKKVNTLIRPDGTK--KAYVRLTPDSDALDV 145 (152)
Q Consensus 90 NtlvF~V--d~kAnK~qIKqAvekly~V--kV~kVNTli~~~g~K--KAyV~L~~d~daldv 145 (152)
+..+|+= ...++..+|++.++.+-.| .|..|..+...+|.- -|||.+....+|...
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~A 84 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 84 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHH
Confidence 4455554 5589999999999996555 366777766555533 499999877665443
No 41
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.32 E-value=35 Score=21.64 Aligned_cols=47 Identities=6% Similarity=0.204 Sum_probs=33.2
Q ss_pred EEecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCe--eeEEEEcCCCCcHHH
Q 031815 95 IVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGT--KKAYVRLTPDSDALD 144 (152)
Q Consensus 95 ~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~--KKAyV~L~~d~dald 144 (152)
-++..++..+|++.++.. .|..|..+....|. --|||.+....+|..
T Consensus 17 nLp~~~t~~~l~~~F~~~---~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ 65 (91)
T 2dgw_A 17 GAPFNVTEKNVMEFLAPL---KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQ 65 (91)
T ss_dssp CCCSSCCHHHHHHHHTTS---CCSEEEEEECTTSCEEEEEEEECSSHHHHHH
T ss_pred CCCCCCCHHHHHHHHhhC---CceEEEEEECCCCCCceEEEEEECCHHHHHH
Confidence 356689999999999886 56677766655442 259999986655433
No 42
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=45.23 E-value=55 Score=21.24 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=35.0
Q ss_pred EEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCC-Ce--eeEEEEcCCCCcHHHHH
Q 031815 93 VFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-GT--KKAYVRLTPDSDALDVA 146 (152)
Q Consensus 93 vF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~-g~--KKAyV~L~~d~daldva 146 (152)
+--++..++..+|++.+.. || .|..|..+..+. |. --|||.+....+|....
T Consensus 28 V~nlp~~~t~~~l~~~f~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 82 (106)
T 1p27_B 28 VTGVHEEATEEDIHDKFAE-YG-EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAM 82 (106)
T ss_dssp EECCCTTCCHHHHHHHHGG-GS-CEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHhc-cC-CeEEEEEEecCCCCceeeEEEEEECCHHHHHHHH
Confidence 3335667999999999877 45 567777665443 32 24999998776655443
No 43
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=44.61 E-value=33 Score=23.38 Aligned_cols=51 Identities=16% Similarity=0.126 Sum_probs=34.5
Q ss_pred EEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCe--eeEEEEcCCCCcHHHHH
Q 031815 94 FIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGT--KKAYVRLTPDSDALDVA 146 (152)
Q Consensus 94 F~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~--KKAyV~L~~d~daldva 146 (152)
--++..++..+|++.++.+ |. |..|..+....|. --|||.+....+|....
T Consensus 13 ~nLp~~~t~~~l~~~F~~~-G~-i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai 65 (116)
T 2fy1_A 13 GGLNRETNEKMLKAVFGKH-GP-ISEVLLIKDRTSKSRGFAFITFENPADAKNAA 65 (116)
T ss_dssp ECCTTTCCHHHHHHHHHTS-SC-CSEEEEECSTTTTCCCEEEEECSSHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHhc-CC-EEEEEEEECCCCCcccEEEEEECCHHHHHHHH
Confidence 3355679999999999884 43 6667666544332 25999998776655443
No 44
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=44.55 E-value=35 Score=20.79 Aligned_cols=36 Identities=11% Similarity=0.213 Sum_probs=31.4
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEee
Q 031815 89 NNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI 124 (152)
Q Consensus 89 ~NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli 124 (152)
..++.+.|+...+=.++|+.++..+++.+.....+.
T Consensus 10 g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~ 45 (76)
T 3a9j_A 10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (76)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 357889999999999999999999999988777654
No 45
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=44.43 E-value=34 Score=22.24 Aligned_cols=49 Identities=12% Similarity=0.270 Sum_probs=33.6
Q ss_pred EecCCCHHHHHHHHHhHhCCceeeEEEeeCCCC-eeeEEEEcCCCCcHHHHH
Q 031815 96 VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDG-TKKAYVRLTPDSDALDVA 146 (152)
Q Consensus 96 Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g-~KKAyV~L~~d~daldva 146 (152)
++..++..+|++.++. || .|..|..+..+++ .--|||.+....+|....
T Consensus 23 lp~~~t~~~l~~~f~~-~G-~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~ 72 (103)
T 2cq3_A 23 IPFRFRDPDLRQMFGQ-FG-KILDVEIIFNERGSKGFGFVTFENSADADRAR 72 (103)
T ss_dssp CCTTCCHHHHHHHGGG-TS-CEEEEEEECCTTTTCCEEEEEESCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHh-cC-CeEEEEEEecCCCCcEEEEEEECCHHHHHHHH
Confidence 4567899999998887 44 4667776655443 225999998776655443
No 46
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=44.00 E-value=58 Score=21.15 Aligned_cols=55 Identities=18% Similarity=0.307 Sum_probs=37.0
Q ss_pred CeEEEE--EecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCee--eEEEEcCCCCcHHHHH
Q 031815 90 NTLVFI--VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTK--KAYVRLTPDSDALDVA 146 (152)
Q Consensus 90 NtlvF~--Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~K--KAyV~L~~d~daldva 146 (152)
++-+|+ ++...+..+|++.++. || .|..|..+..+.|.- -|||.+....+|....
T Consensus 29 ~~~l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~ 87 (107)
T 3ulh_A 29 GGKLLVSNLDFGVSDADIQELFAE-FG-TLKKAAVHYDRSGRSLGTADVHFERKADALKAM 87 (107)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHT-TS-CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEECCCCCcceEEEEEECCHHHHHHHH
Confidence 344455 5567899999999987 44 456777666555432 5999998766655443
No 47
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.65 E-value=16 Score=25.21 Aligned_cols=47 Identities=15% Similarity=0.287 Sum_probs=33.8
Q ss_pred EecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCee--eEEEEcCCCCcHHHH
Q 031815 96 VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTK--KAYVRLTPDSDALDV 145 (152)
Q Consensus 96 Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~K--KAyV~L~~d~daldv 145 (152)
++..++..+|++.++.+ + |..|..+..++|.- -|||.+....||...
T Consensus 24 Lp~~~te~dl~~~F~~~-~--v~~v~i~~d~~g~~~G~afV~F~~~~~a~~A 72 (109)
T 2dnn_A 24 MPFSAMENDVRDFFHGL-R--VDAVHLLKDHVGRNNGNGLVKFLSPQDTFEA 72 (109)
T ss_dssp CCSSCCHHHHHHHTTTS-C--CCEEEECCCTTCCCCSEEEEECSSHHHHHHH
T ss_pred CCCCCCHHHHHHHhccC-C--eeEEEEEECCCCCCCeEEEEEECCHHHHHHH
Confidence 55689999999999885 4 56777766554432 499999877665443
No 48
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=43.45 E-value=38 Score=22.86 Aligned_cols=54 Identities=17% Similarity=0.290 Sum_probs=37.5
Q ss_pred CeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCee-eEEEEcCCCCcHHHH
Q 031815 90 NTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTK-KAYVRLTPDSDALDV 145 (152)
Q Consensus 90 NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~K-KAyV~L~~d~daldv 145 (152)
|-||=-++..++..+|++.+.. || .|..|..+...++.| =|||.+....+|...
T Consensus 7 ~lfV~nLp~~~te~~L~~~F~~-~G-~v~~v~i~~d~~~~kg~afV~f~~~~~A~~A 61 (115)
T 4f25_A 7 NIFIKNLDKSIDNKALYDTFSA-FG-NILSCKVVCDENGSKGYGFVHFETQEAAERA 61 (115)
T ss_dssp EEEEESCCTTCCHHHHHHHHGG-GS-CEEEEEEEEETTEEEEEEEEEESCHHHHHHH
T ss_pred EEEECCCCCCCCHHHHHHHHhc-cC-CEEEEEEeecCCCCCceEEEEECCHHHHHHH
Confidence 3444456778999999999987 56 477777766554322 499999877665443
No 49
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=42.91 E-value=88 Score=22.22 Aligned_cols=68 Identities=12% Similarity=0.193 Sum_probs=42.6
Q ss_pred cchhhhhhhhcCCeEEEEEec---CCCHHHHHHHHHhHhCCceeeE--EEeeC-C-CCeeeEEEEcCCCCcHHHHHHhh
Q 031815 78 TTESAMKKIEDNNTLVFIVDI---RADKKKIKDAVKKMYDIQAKKV--NTLIR-P-DGTKKAYVRLTPDSDALDVANKI 149 (152)
Q Consensus 78 ~TEkamk~~E~~NtlvF~Vd~---kAnK~qIKqAvekly~VkV~kV--NTli~-~-~g~KKAyV~L~~d~daldvanki 149 (152)
+.+....++.. ..++|.|-= ..+|.+|++.+-++|+++..-| -.+.+ - +|.-..|... ||.+|.|.++
T Consensus 6 ~~~~~N~LL~R-ke~~~~v~H~~~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I---Yds~e~akk~ 80 (102)
T 1ywx_A 6 ISDRNNPLLQR-REIKFTVSFDAATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI---YNDEKAMATI 80 (102)
T ss_dssp EEEEEETTTTE-EEEEEEEECSSCCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE---CSCHHHHHHS
T ss_pred EEeeecCCcCc-EEEEEEEEcCCCCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE---ECCHHHHHhh
Confidence 34455556654 477776543 3589999999999999975333 22222 2 3444555544 6778888764
No 50
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=42.80 E-value=51 Score=21.73 Aligned_cols=52 Identities=13% Similarity=0.312 Sum_probs=36.0
Q ss_pred CeEEEE--EecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHHH
Q 031815 90 NTLVFI--VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVA 146 (152)
Q Consensus 90 NtlvF~--Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~KKAyV~L~~d~daldva 146 (152)
++-+|+ ++...+..+|++.++. || .|..|..+. ..| -|||.+....+|....
T Consensus 25 ~~~l~V~nl~~~~t~~~l~~~F~~-~G-~i~~v~i~~-~~g--~afV~f~~~~~a~~A~ 78 (109)
T 1x4g_A 25 NCTVYCGGIASGLTDQLMRQTFSP-FG-QIMEIRVFP-EKG--YSFVRFSTHESAAHAI 78 (109)
T ss_dssp CCEEEEECCSSCCCHHHHHHHHHH-HS-CEEEEEEET-TTT--EEEEEESSHHHHHHHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEeC-CCC--EEEEEECCHHHHHHHH
Confidence 344454 4567999999999987 66 577776553 345 4999998776665544
No 51
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=42.73 E-value=51 Score=21.85 Aligned_cols=54 Identities=11% Similarity=0.152 Sum_probs=36.6
Q ss_pred eEEEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCC-Ce--eeEEEEcCCCCcHHHHH
Q 031815 91 TLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-GT--KKAYVRLTPDSDALDVA 146 (152)
Q Consensus 91 tlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~-g~--KKAyV~L~~d~daldva 146 (152)
-++--++..++..+|++.++. || .|..|..+..+. |. --|||.+....+|....
T Consensus 28 l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 84 (114)
T 2cq4_A 28 VFCMQLAARIRPRDLEDFFSA-VG-KVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI 84 (114)
T ss_dssp EEEESCCTTCCHHHHHHHHTT-TS-CEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-CC-CEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH
Confidence 344446778999999999877 55 577777664443 21 24999998777765443
No 52
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=42.50 E-value=19 Score=24.18 Aligned_cols=48 Identities=25% Similarity=0.318 Sum_probs=34.6
Q ss_pred EEecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCee--eEEEEcCCCCcHHHH
Q 031815 95 IVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTK--KAYVRLTPDSDALDV 145 (152)
Q Consensus 95 ~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~K--KAyV~L~~d~daldv 145 (152)
-++..++..+|++.++. |++ ..|..+..++|.- -|||.+....+|...
T Consensus 22 nLp~~~te~~l~~~F~~-~G~--~~v~i~~d~~g~~~G~afV~F~~~~~a~~A 71 (102)
T 1wez_A 22 GLPYRATENDIYNFFSP-LNP--MRVHIEIGPDGRVTGEADVEFATHEDAVAA 71 (102)
T ss_dssp SCCTTCCHHHHHHSSCS-CCC--SEEEEEESSSSCEEEEEEEECSSSHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH-cCc--eEEEEEECCCCCEeeEEEEEECCHHHHHHH
Confidence 35668999999998877 673 3787777666543 499999877665443
No 53
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=42.28 E-value=38 Score=22.48 Aligned_cols=49 Identities=14% Similarity=0.148 Sum_probs=33.3
Q ss_pred EEEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHHH
Q 031815 92 LVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVA 146 (152)
Q Consensus 92 lvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~KKAyV~L~~d~daldva 146 (152)
+|--++..++..+|++.++. |+ +|..|..+. +| -|||.+....+|....
T Consensus 19 ~V~nLp~~~t~~~l~~~F~~-~G-~i~~~~i~~--~g--~afV~f~~~~~a~~Ai 67 (108)
T 1x4c_A 19 VVSGLPPSGSWQDLKDHMRE-AG-DVCYADVYR--DG--TGVVEFVRKEDMTYAV 67 (108)
T ss_dssp EEESCCSSCCHHHHHHHHGG-GS-CEEEEEEET--TT--EEEEEESSHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHh-cC-CEeEEEEec--CC--EEEEEECCHHHHHHHH
Confidence 34445678999999998887 55 466666543 36 4999998766654443
No 54
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=42.06 E-value=36 Score=22.20 Aligned_cols=36 Identities=11% Similarity=0.213 Sum_probs=31.7
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEee
Q 031815 89 NNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI 124 (152)
Q Consensus 89 ~NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli 124 (152)
..++.|.|+...+=.++|+.|+..+++.+.....+.
T Consensus 11 g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~ 46 (96)
T 3k9o_B 11 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 46 (96)
T ss_dssp CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEE
Confidence 468889999999999999999999999998876653
No 55
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.82 E-value=58 Score=21.08 Aligned_cols=50 Identities=22% Similarity=0.347 Sum_probs=34.3
Q ss_pred EecCCCHHHHHHHHHhHhCCceeeEEEeeCCC-Ce--eeEEEEcCCCCcHHHHHH
Q 031815 96 VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-GT--KKAYVRLTPDSDALDVAN 147 (152)
Q Consensus 96 Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~-g~--KKAyV~L~~d~daldvan 147 (152)
++...+..+|++.++. || .|..|..+..+. |. --|||++....+|.....
T Consensus 21 Lp~~~t~~~l~~~f~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 73 (103)
T 2dnm_A 21 LTYRTSPDSLRRVFEK-YG-RVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEA 73 (103)
T ss_dssp CCTTCCHHHHHHHHTT-TS-CEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHH
T ss_pred CCCCCCHHHHHHHHHh-cC-CEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHH
Confidence 4567999999999887 45 466666554432 21 249999998877665544
No 56
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=41.68 E-value=36 Score=23.60 Aligned_cols=52 Identities=8% Similarity=0.089 Sum_probs=34.1
Q ss_pred EEEEEecCCCHHHHHHHHHhHhCCceeeEEEee-CCCCeeeEEEEcCCCCcHHHHH
Q 031815 92 LVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI-RPDGTKKAYVRLTPDSDALDVA 146 (152)
Q Consensus 92 lvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli-~~~g~KKAyV~L~~d~daldva 146 (152)
+|--++..++..++++.++. ||.+|..|.... .+.| -|||.+....+|....
T Consensus 32 ~VgnLp~~~te~dL~~~F~~-~G~~v~~v~i~~~~~rG--faFV~F~~~e~A~~Ai 84 (111)
T 2jvr_A 32 TMKNLPEGCSWQDLKDLARE-NSLETTFSSVNTRDFDG--TGALEFPSEEILVEAL 84 (111)
T ss_dssp EEECSSCCCCHHHHHHHHHH-HTCCCSEEECSSCSSSC--CEEEEESSHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHHH-hCCeeEEEEEEcCCCCC--EEEEEECCHHHHHHHH
Confidence 33344567999999999988 465555555431 3345 4999998766654433
No 57
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=41.65 E-value=47 Score=20.80 Aligned_cols=35 Identities=11% Similarity=0.132 Sum_probs=30.9
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEe
Q 031815 89 NNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTL 123 (152)
Q Consensus 89 ~NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTl 123 (152)
..++.|.|+...+=.++|+.++..+|+.+.....+
T Consensus 14 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~ 48 (79)
T 3phx_B 14 GRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT 48 (79)
T ss_dssp SCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEE
T ss_pred CCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEE
Confidence 46889999999999999999999999998877554
No 58
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=41.62 E-value=60 Score=23.26 Aligned_cols=64 Identities=17% Similarity=0.180 Sum_probs=40.5
Q ss_pred hhhhhhcCCeEEEEEec----CCCHHHHHHHHHhHhCCceeeE--EEeeCC--CCeeeEEEEcCCCCcHHHHHHhh
Q 031815 82 AMKKIEDNNTLVFIVDI----RADKKKIKDAVKKMYDIQAKKV--NTLIRP--DGTKKAYVRLTPDSDALDVANKI 149 (152)
Q Consensus 82 amk~~E~~NtlvF~Vd~----kAnK~qIKqAvekly~VkV~kV--NTli~~--~g~KKAyV~L~~d~daldvanki 149 (152)
...++.. ..++|.|.= ..+|.+|++.+-++|+++..-| -.+.+. +|.=..|..+ ||.+|.|.++
T Consensus 18 ~N~LL~R-ke~~~~v~Hpg~~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I---Yds~e~akk~ 89 (107)
T 2v94_A 18 ENKLIGR-KEIYFEIYHPGEPTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY---YYDKDRMLYI 89 (107)
T ss_dssp EETTTTE-EEEEEEEECTTSCCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE---ESSHHHHHHH
T ss_pred ecCCcCc-EEEEEEEEeCCCCCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE---ECCHHHHHhh
Confidence 3445554 577886543 4579999999999999965433 222222 3444455544 5778888764
No 59
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=41.47 E-value=40 Score=22.74 Aligned_cols=52 Identities=19% Similarity=0.229 Sum_probs=34.2
Q ss_pred EEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCC-CC--eeeEEEEcCCCCcHHHHH
Q 031815 93 VFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRP-DG--TKKAYVRLTPDSDALDVA 146 (152)
Q Consensus 93 vF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~-~g--~KKAyV~L~~d~daldva 146 (152)
|--++...+..+|++.++. || .|..|..+..+ .| .--|||.+....+|....
T Consensus 27 V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 81 (126)
T 3ex7_B 27 VTGVHEEATEEDIHDKFAE-YG-EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAM 81 (126)
T ss_dssp EESCCTTCCHHHHHHHHHT-TS-CEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEecCCCCccceEEEEEECCHHHHHHHH
Confidence 3335568899999999987 55 56666665443 12 125999998776655443
No 60
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=41.32 E-value=92 Score=22.01 Aligned_cols=66 Identities=14% Similarity=0.273 Sum_probs=40.8
Q ss_pred hhhhhhhhcCCeEEEEEec---CCCHHHHHHHHHhHhCCceeeE--EEeeC-C-CCeeeEEEEcCCCCcHHHHHHhh
Q 031815 80 ESAMKKIEDNNTLVFIVDI---RADKKKIKDAVKKMYDIQAKKV--NTLIR-P-DGTKKAYVRLTPDSDALDVANKI 149 (152)
Q Consensus 80 Ekamk~~E~~NtlvF~Vd~---kAnK~qIKqAvekly~VkV~kV--NTli~-~-~g~KKAyV~L~~d~daldvanki 149 (152)
+....++.. ..++|.|-= ..+|.+|++.+-++|+++..-| -.+.+ - +|.=..|..+ ||.+|.|.++
T Consensus 8 ~~~N~LL~R-ke~~~~v~H~~~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I---Yds~e~akk~ 80 (101)
T 1xn9_A 8 DKKNPLLNR-RELDFIVKYEGSTPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL---YEDADRMKQV 80 (101)
T ss_dssp EEEETTTTE-EEEEEEEECSSSCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE---CSCHHHHHHH
T ss_pred eeecCCcCc-EEEEEEEEcCCCCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE---ECCHHHHHhh
Confidence 344455554 477776542 4589999999999999865332 22222 2 3444555544 5678888764
No 61
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.27 E-value=23 Score=23.27 Aligned_cols=47 Identities=13% Similarity=0.167 Sum_probs=33.7
Q ss_pred EecCCCHHHHHHHHHhHhCCceeeEEEeeCCC--Cee--eEEEEcCCCCcHHHH
Q 031815 96 VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD--GTK--KAYVRLTPDSDALDV 145 (152)
Q Consensus 96 Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~--g~K--KAyV~L~~d~daldv 145 (152)
++..++..+|++.++. || |..|..+..++ |.- -|||.+....+|...
T Consensus 23 lp~~~t~~~l~~~F~~-~G--i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A 73 (104)
T 1wi8_A 23 LPYDVTEESIKEFFRG-LN--ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSA 73 (104)
T ss_dssp CCSSCCHHHHHHHTTT-SC--EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHH
T ss_pred CCCcCCHHHHHHHHHH-CC--ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHH
Confidence 5668999999999987 47 88888776543 221 499999876665443
No 62
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=41.10 E-value=43 Score=20.38 Aligned_cols=36 Identities=11% Similarity=0.209 Sum_probs=31.4
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEee
Q 031815 89 NNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI 124 (152)
Q Consensus 89 ~NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli 124 (152)
..++.+.|+...+=.++|+.++..+++.+.....+.
T Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~ 45 (76)
T 1ndd_A 10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (76)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE
Confidence 357889999999999999999999999988877654
No 63
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.69 E-value=49 Score=20.98 Aligned_cols=50 Identities=6% Similarity=0.203 Sum_probs=33.9
Q ss_pred EEecCCCHHHHHHHHHhHhCCceeeEEEeeCCC-C--eeeEEEEcCCCCcHHHHH
Q 031815 95 IVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-G--TKKAYVRLTPDSDALDVA 146 (152)
Q Consensus 95 ~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~-g--~KKAyV~L~~d~daldva 146 (152)
-++...+..+|++.++. || .|..|..+..+. | .--|||.+....+|....
T Consensus 12 nlp~~~t~~~l~~~f~~-~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 64 (95)
T 2dnz_A 12 SLHFNITEDMLRGIFEP-FG-KIDNIVLMKDSDTGRSKGYGFITFSDSECARRAL 64 (95)
T ss_dssp SCCTTCCHHHHHHHHTT-TS-CEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHh-cC-CEeEEEEeecCCCCceeeEEEEEECCHHHHHHHH
Confidence 34567899999999987 45 477777665433 1 125999998776655443
No 64
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=40.51 E-value=72 Score=20.54 Aligned_cols=50 Identities=22% Similarity=0.428 Sum_probs=35.4
Q ss_pred EEecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCe--eeEEEEcCCCCcHHHHH
Q 031815 95 IVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGT--KKAYVRLTPDSDALDVA 146 (152)
Q Consensus 95 ~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~--KKAyV~L~~d~daldva 146 (152)
-++..++..+|++.++. || .|..|..+..+.|. --|||.+....+|....
T Consensus 16 nLp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai 67 (102)
T 2xs2_A 16 GIDVRMDETEIRSFFAR-YG-SVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIV 67 (102)
T ss_dssp CCCTTCCHHHHHHHHGG-GS-CEEEEEEEECTTSCEEEEEEEEESSCCCHHHHT
T ss_pred CCCCCCCHHHHHHHHHh-CC-CeEEEEEEECCCCCccceEEEEECCHHHHHHHH
Confidence 35668999999999977 45 56777766655443 24899998887765543
No 65
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=40.38 E-value=40 Score=21.21 Aligned_cols=36 Identities=11% Similarity=0.237 Sum_probs=31.5
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEee
Q 031815 89 NNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI 124 (152)
Q Consensus 89 ~NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli 124 (152)
..++.+.|+...+=.++|+.++..+++.+.....+.
T Consensus 13 g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~ 48 (85)
T 3n3k_B 13 GRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 48 (85)
T ss_dssp GCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE
Confidence 468899999999999999999999999998876554
No 66
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.37 E-value=48 Score=21.65 Aligned_cols=55 Identities=18% Similarity=0.215 Sum_probs=36.2
Q ss_pred eEEEE--EecCCCHHHHHHHHHhHhCCceeeEEEeeC------CCCeeeEEEEcCCCCcHHHHHHh
Q 031815 91 TLVFI--VDIRADKKKIKDAVKKMYDIQAKKVNTLIR------PDGTKKAYVRLTPDSDALDVANK 148 (152)
Q Consensus 91 tlvF~--Vd~kAnK~qIKqAvekly~VkV~kVNTli~------~~g~KKAyV~L~~d~daldvank 148 (152)
+-+|+ ++...+..+|++.++.+ |-.|..|..+.. +.| -|||.+....+|......
T Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~~~-G~~v~~v~i~~~~~~~g~~~g--~afV~f~~~~~A~~A~~~ 71 (109)
T 2dis_A 9 CRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRG--FAFVEYESHRAAAMARRK 71 (109)
T ss_dssp EEEEEECCCTTSCHHHHHHHHHHH-STTEEEEECCSSSCTTTTTCC--EEEEEESSHHHHHHHHTT
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHh-cCCceEEEEEccCCCCCCcCc--EEEEEecCHHHHHHHHHH
Confidence 33444 45679999999999884 544777765422 224 499999877666554443
No 67
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=40.32 E-value=36 Score=24.49 Aligned_cols=50 Identities=8% Similarity=0.035 Sum_probs=35.8
Q ss_pred EEecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHHHH
Q 031815 95 IVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVAN 147 (152)
Q Consensus 95 ~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~KKAyV~L~~d~daldvan 147 (152)
-++...+..+|++.++.+ |..|..|..+-...| -|||.+....+|.....
T Consensus 127 nl~~~~~~~~l~~~f~~~-G~~v~~v~i~~~~~g--~afV~f~~~~~A~~A~~ 176 (198)
T 1qm9_A 127 NIPPSVSEEDLKVLFSSN-GGVVKGFKFFQKDRK--MALIQMGSVEEAVQALI 176 (198)
T ss_dssp CCCTTCCHHHHHHHHHHT-TSCCCEEEESSTTSS--CEEEECSSHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHc-CCCceEEEEEeCCCc--EEEEEeCCHHHHHHHHH
Confidence 345678999999999884 777777776533334 69999987766655433
No 68
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=40.21 E-value=28 Score=24.90 Aligned_cols=55 Identities=16% Similarity=0.302 Sum_probs=37.1
Q ss_pred eEEEE--EecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCee--eEEEEcCCCCcHHHHH
Q 031815 91 TLVFI--VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTK--KAYVRLTPDSDALDVA 146 (152)
Q Consensus 91 tlvF~--Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~K--KAyV~L~~d~daldva 146 (152)
..+|+ ++..++..+|++.++.+ +|....|..+..++|.- -|||.+....+|....
T Consensus 43 ~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al 101 (126)
T 2hgm_A 43 GFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKAL 101 (126)
T ss_dssp CEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHH
Confidence 44555 56689999999999885 54322676665444321 4999999887765543
No 69
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=39.97 E-value=56 Score=22.16 Aligned_cols=53 Identities=21% Similarity=0.291 Sum_probs=36.9
Q ss_pred eEEEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCC-Cee--eEEEEcCCCCcHHHH
Q 031815 91 TLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-GTK--KAYVRLTPDSDALDV 145 (152)
Q Consensus 91 tlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~-g~K--KAyV~L~~d~daldv 145 (152)
-+|--++...+..++++.+++ || .|..|..+..+. |.- =|||.+....+|...
T Consensus 9 lfV~nL~~~~te~~L~~~F~~-~G-~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~A 64 (110)
T 3s8s_A 9 VTFARLNDNVRETFLKDMCRK-YG-EVEEVEILLHPRTRKHLGLARVLFTSTRGAKET 64 (110)
T ss_dssp EEEESCCTTCCHHHHHHHHTT-TS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHh-cC-CeeEEEEEECCCCCceeeEEEEEECCHHHHHHH
Confidence 455556778999999998877 55 577888776554 322 389998876665443
No 70
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=39.84 E-value=39 Score=22.62 Aligned_cols=54 Identities=7% Similarity=0.142 Sum_probs=35.9
Q ss_pred EEEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCC-Ce--eeEEEEcCCCCcHHHHHH
Q 031815 92 LVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-GT--KKAYVRLTPDSDALDVAN 147 (152)
Q Consensus 92 lvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~-g~--KKAyV~L~~d~daldvan 147 (152)
++--++...+..+|++.++. || .|..|..+..+. |. --|||.+....+|.....
T Consensus 29 fV~nLp~~~te~~L~~~F~~-~G-~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~ 85 (109)
T 2rs2_A 29 FIGGLSWQTTQEGLREYFGQ-FG-EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA 85 (109)
T ss_dssp EEESCCTTCCHHHHHHHHTT-TS-CEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHc-cC-CeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 33445678999999999887 45 466777665442 21 149999987766555443
No 71
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=39.76 E-value=43 Score=22.66 Aligned_cols=54 Identities=19% Similarity=0.302 Sum_probs=35.5
Q ss_pred CeEEEE--EecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCe--eeEEEEcCCCCcHHHH
Q 031815 90 NTLVFI--VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGT--KKAYVRLTPDSDALDV 145 (152)
Q Consensus 90 NtlvF~--Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~--KKAyV~L~~d~daldv 145 (152)
++-+|+ ++...+..+|++.++. || .|..|..+..+.|. --|||.+....+|...
T Consensus 35 ~~~l~V~nlp~~~t~~~l~~~F~~-~G-~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~A 92 (124)
T 2kt5_A 35 GAKLLVSNLDFGVSDADIQELFAE-FG-TLKKAAVDYDRSGRSLGTADVHFERRADALKA 92 (124)
T ss_dssp CEEEEEESCCSSCCHHHHHHHHHT-TS-CCSEEEEECCSSSSCCSEEEEEESSHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEEECCCCCEeeEEEEEECCHHHHHHH
Confidence 344455 4567899999999988 45 45666665544332 2599999876665443
No 72
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=38.79 E-value=59 Score=22.26 Aligned_cols=55 Identities=9% Similarity=0.240 Sum_probs=37.9
Q ss_pred eEEEE--EecCCCHHHHHHHHHhHhCCceeeEEEeeCCC-Ce--eeEEEEcCCCCcHHHHHH
Q 031815 91 TLVFI--VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-GT--KKAYVRLTPDSDALDVAN 147 (152)
Q Consensus 91 tlvF~--Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~-g~--KKAyV~L~~d~daldvan 147 (152)
+-+|+ ++..++..+|++.++.+ | .|..|..+..++ |. --|||.+....+|.....
T Consensus 43 ~~l~V~nLp~~~~~~~l~~~F~~~-G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 102 (139)
T 1u6f_A 43 RNLMVNYIPTTVDEVQLRQLFERY-G-PIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIA 102 (139)
T ss_dssp SEEEEESCSTTCCHHHHHHHHHHH-S-CEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc-C-CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHH
Confidence 33444 56789999999999884 5 477777766543 32 249999987766655443
No 73
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=38.49 E-value=58 Score=20.95 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=31.6
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEee
Q 031815 89 NNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI 124 (152)
Q Consensus 89 ~NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli 124 (152)
..++.|.|+...+=.++|+.|+..+++.+.....+.
T Consensus 15 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~ 50 (90)
T 4dwf_A 15 SQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY 50 (90)
T ss_dssp CCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 468899999999999999999999999998876543
No 74
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=38.47 E-value=41 Score=24.90 Aligned_cols=55 Identities=18% Similarity=0.293 Sum_probs=36.1
Q ss_pred CeEEEE--EecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCe--eeEEEEcCCCCcHHHHH
Q 031815 90 NTLVFI--VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGT--KKAYVRLTPDSDALDVA 146 (152)
Q Consensus 90 NtlvF~--Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~--KKAyV~L~~d~daldva 146 (152)
++-+|+ ++..++..+|++.++. || .|..|.....+.|. --|||.+....+|....
T Consensus 88 ~~~l~V~nLp~~~te~~L~~~F~~-~G-~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai 146 (177)
T 2f3j_A 88 GAKLLVSNLDFGVSDADIQELFAE-FG-TLKKAAVDYDRSGRSLGTADVHFERRADALKAM 146 (177)
T ss_dssp CEEEEEECCCSCCCHHHHHHHHHH-TS-CCSEEEECCCTTSSCSCCEEEEESCHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHH
Confidence 444555 4567999999999998 45 45666655443332 24999998766655443
No 75
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.07 E-value=63 Score=20.37 Aligned_cols=44 Identities=14% Similarity=0.326 Sum_probs=31.2
Q ss_pred EecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHHH
Q 031815 96 VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVA 146 (152)
Q Consensus 96 Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~KKAyV~L~~d~daldva 146 (152)
++...+..+|++.++. || .|..|... .| -|||.+....+|....
T Consensus 16 lp~~~t~~~l~~~F~~-~G-~i~~v~~~---~g--~afV~f~~~~~A~~A~ 59 (90)
T 2dnq_A 16 LPREATEQEIRSLFEQ-YG-KVLECDII---KN--YGFVHIEDKTAAEDAI 59 (90)
T ss_dssp CCSSCCHHHHHHHHHT-SS-CEEEEEEE---TT--EEEEEESSHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHh-CC-CEEEEEEE---CC--EEEEEECCHHHHHHHH
Confidence 5668999999999987 44 45666555 45 4999998766655443
No 76
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.01 E-value=53 Score=21.28 Aligned_cols=53 Identities=13% Similarity=0.273 Sum_probs=34.7
Q ss_pred eEEEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCee--eEEEEcCCCCcHHHHH
Q 031815 91 TLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTK--KAYVRLTPDSDALDVA 146 (152)
Q Consensus 91 tlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~K--KAyV~L~~d~daldva 146 (152)
-++--++...+..+|++.++. || .|..|..+.. .|.- -|||.+....+|....
T Consensus 18 l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~ 72 (103)
T 2d9p_A 18 LYVKNLDDGIDDERLRKAFSP-FG-TITSAKVMME-GGRSKGFGFVCFSSPEEATKAV 72 (103)
T ss_dssp EEEECCCTTCCHHHHHHTTTT-TS-CEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHH
Confidence 344445678999999988876 55 3667766654 3332 4899998666655443
No 77
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=37.85 E-value=1.2e+02 Score=23.19 Aligned_cols=57 Identities=21% Similarity=0.261 Sum_probs=37.1
Q ss_pred CeEEEEEec----CCCHHHHHHHHHhHhCCceeeE--EEeeCC--CCeeeEEEEcCCCCcHHHHHHhh
Q 031815 90 NTLVFIVDI----RADKKKIKDAVKKMYDIQAKKV--NTLIRP--DGTKKAYVRLTPDSDALDVANKI 149 (152)
Q Consensus 90 NtlvF~Vd~----kAnK~qIKqAvekly~VkV~kV--NTli~~--~g~KKAyV~L~~d~daldvanki 149 (152)
..++|.|.= ..+|.||++.+-++|+++..-| -.+... +|.=..|..+ ||.+|.|.++
T Consensus 19 kE~v~dV~Hpg~aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I---YDs~e~aKk~ 83 (149)
T 2xzm_P 19 RQLSLDVLHPDSPTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV---YDNQQYLLKY 83 (149)
T ss_dssp EEEEEEEECSSSCSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE---ESCHHHHHHH
T ss_pred EEEEEEEEeCCCCCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE---eCCHHHHHhh
Confidence 467776543 6789999999999999865433 333222 3444555544 5668888764
No 78
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=37.43 E-value=53 Score=20.54 Aligned_cols=35 Identities=11% Similarity=0.209 Sum_probs=31.1
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEe
Q 031815 89 NNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTL 123 (152)
Q Consensus 89 ~NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTl 123 (152)
..++.+.|+...+=.++|+.++..+++.+.....+
T Consensus 13 g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~ 47 (85)
T 3mtn_B 13 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 47 (85)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEE
Confidence 46889999999999999999999999999887655
No 79
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=36.62 E-value=78 Score=19.82 Aligned_cols=49 Identities=10% Similarity=0.057 Sum_probs=32.3
Q ss_pred EecCCCHHHHHHHHHhHhCCceeeEEEeeCCCC-eeeEEEEcCCCCcHHHHH
Q 031815 96 VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDG-TKKAYVRLTPDSDALDVA 146 (152)
Q Consensus 96 Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g-~KKAyV~L~~d~daldva 146 (152)
++...+..+|++.++. || .|..|......+. .--|||.+....+|....
T Consensus 16 lp~~~t~~~l~~~f~~-~G-~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~ 65 (92)
T 2dgv_A 16 LPFDFTWKMLKDKFNE-CG-HVLYADIKMENGKSKGCGVVKFESPEVAERAC 65 (92)
T ss_dssp CCTTCCHHHHHHHHHT-TS-CEEEEEEEESSSCEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHh-cC-CEEEEEEEccCCCcceEEEEEECCHHHHHHHH
Confidence 4567899999999988 44 4556665543221 224999998766655443
No 80
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.23 E-value=56 Score=20.75 Aligned_cols=49 Identities=12% Similarity=0.343 Sum_probs=33.3
Q ss_pred eEEEE--EecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHHH
Q 031815 91 TLVFI--VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVA 146 (152)
Q Consensus 91 tlvF~--Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~KKAyV~L~~d~daldva 146 (152)
+-+|+ ++...+..+|++.++. || .|..|..+ .| -|||.+....+|....
T Consensus 11 ~~l~V~nLp~~~t~~~l~~~F~~-~G-~v~~v~~~---~~--~afV~f~~~~~a~~A~ 61 (92)
T 2dgt_A 11 TKLHVGNISPTCTNQELRAKFEE-YG-PVIECDIV---KD--YAFVHMERAEDAVEAI 61 (92)
T ss_dssp EEEEEESCCSSCCHHHHHHHHHT-TS-CCCEEEEC---SS--EEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEE---CC--EEEEEECCHHHHHHHH
Confidence 44444 4567999999999988 55 45566554 23 6999998766655444
No 81
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=36.18 E-value=85 Score=21.26 Aligned_cols=52 Identities=10% Similarity=0.123 Sum_probs=36.1
Q ss_pred EEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCC-CCe--eeEEEEcCCCCcHHHHH
Q 031815 93 VFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRP-DGT--KKAYVRLTPDSDALDVA 146 (152)
Q Consensus 93 vF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~-~g~--KKAyV~L~~d~daldva 146 (152)
+--++...+..+|++.++. || .|..|..+..+ .|. --|||.+....+|....
T Consensus 7 v~nlp~~~~~~~l~~~f~~-~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~ 61 (167)
T 1fxl_A 7 VNYLPQNMTQEEFRSLFGS-IG-EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 61 (167)
T ss_dssp EESCCTTCCHHHHHHHHHT-TS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred EcCCCCCCCHHHHHHHHHh-cC-CeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHH
Confidence 3345678999999999987 55 57777777655 332 34999998766655443
No 82
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.73 E-value=89 Score=20.20 Aligned_cols=48 Identities=8% Similarity=0.169 Sum_probs=34.7
Q ss_pred EecCCCHHHHHHHHHhHhCCceeeEEEeeCCC-Ce--eeEEEEcCCCCcHHHH
Q 031815 96 VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-GT--KKAYVRLTPDSDALDV 145 (152)
Q Consensus 96 Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~-g~--KKAyV~L~~d~daldv 145 (152)
++...+..+|++.++. || .|..|..+..+. |. --|||.+....+|...
T Consensus 24 lp~~~t~~~l~~~F~~-~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a 74 (105)
T 2dh8_A 24 LDWSTTQETLRSYFSQ-YG-EVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 74 (105)
T ss_dssp CCTTCCHHHHHHHHHT-TS-CEEEEEEEECSSSCCEEEEEEEEESSTTHHHHH
T ss_pred CCCCCCHHHHHHHHHh-cC-CeEEEEEeeCCCCCCcceEEEEEECCHHHHHHH
Confidence 4668999999999988 55 577777766543 22 2599999987776544
No 83
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=35.58 E-value=70 Score=20.44 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=31.1
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEe
Q 031815 89 NNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTL 123 (152)
Q Consensus 89 ~NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTl 123 (152)
..++.|.|+...+=.++|+.++..+|+.+.....+
T Consensus 27 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi 61 (88)
T 4eew_A 27 SQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLI 61 (88)
T ss_dssp SCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE
Confidence 46889999999999999999999999999887554
No 84
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=35.28 E-value=56 Score=21.23 Aligned_cols=36 Identities=8% Similarity=0.184 Sum_probs=31.5
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEee
Q 031815 89 NNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI 124 (152)
Q Consensus 89 ~NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli 124 (152)
..++.+.|+...+=.++|+.|+..+|+.+.....+.
T Consensus 27 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 62 (91)
T 3v6c_B 27 GTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 62 (91)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEE
Confidence 468899999999999999999999999998876553
No 85
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=35.05 E-value=47 Score=21.68 Aligned_cols=36 Identities=11% Similarity=0.209 Sum_probs=31.4
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEee
Q 031815 89 NNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI 124 (152)
Q Consensus 89 ~NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli 124 (152)
..++.+.|+...+=.++|+.++..+++.+.....+.
T Consensus 10 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 45 (88)
T 4fbj_B 10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (88)
T ss_dssp CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEE
Confidence 468899999999999999999999999988776543
No 86
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=35.03 E-value=45 Score=22.20 Aligned_cols=35 Identities=11% Similarity=0.218 Sum_probs=31.0
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEe
Q 031815 89 NNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTL 123 (152)
Q Consensus 89 ~NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTl 123 (152)
..++.|.|+...+=.++|+.|+..+++.+.....+
T Consensus 32 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi 66 (98)
T 4hcn_B 32 GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI 66 (98)
T ss_dssp CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEE
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEE
Confidence 46889999999999999999999999999887655
No 87
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=34.99 E-value=80 Score=19.47 Aligned_cols=50 Identities=8% Similarity=0.092 Sum_probs=35.2
Q ss_pred EEEEEecCCCHHHHHHHHHhHh---CC------ceeeEEEeeCCCCeeeEEEEcCCCCcHHH
Q 031815 92 LVFIVDIRADKKKIKDAVKKMY---DI------QAKKVNTLIRPDGTKKAYVRLTPDSDALD 144 (152)
Q Consensus 92 lvF~Vd~kAnK~qIKqAvekly---~V------kV~kVNTli~~~g~KKAyV~L~~d~dald 144 (152)
++--++..++..+|++.++... |+ .|..|.+. ...| -|||.+....+|..
T Consensus 10 ~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~-~~kg--~afV~f~~~~~a~~ 68 (87)
T 2hzc_A 10 YVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKN--FAFLEFRSVDETTQ 68 (87)
T ss_dssp EEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC-SSSS--EEEEEESSHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec-CCCc--EEEEEcCCHHHHHH
Confidence 3444567899999999998863 65 67777765 3345 49999986655443
No 88
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=34.71 E-value=55 Score=20.71 Aligned_cols=35 Identities=11% Similarity=0.222 Sum_probs=30.8
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEe
Q 031815 89 NNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTL 123 (152)
Q Consensus 89 ~NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTl 123 (152)
..++.|.|+...+=.++|+.++..+++.+.....+
T Consensus 22 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~ 56 (88)
T 3dbh_I 22 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI 56 (88)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEE
Confidence 46889999999999999999999999998777544
No 89
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=34.71 E-value=43 Score=21.79 Aligned_cols=47 Identities=13% Similarity=0.187 Sum_probs=34.0
Q ss_pred EecCCCHHHHHHHHHhHhCCceeeEEEeeCCC-Ce--eeEEEEcCCCCcHHHH
Q 031815 96 VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-GT--KKAYVRLTPDSDALDV 145 (152)
Q Consensus 96 Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~-g~--KKAyV~L~~d~daldv 145 (152)
++...+..+|++.++.+ + |..|..+..+. |. --|||.+....+|...
T Consensus 23 Lp~~~t~~~l~~~F~~~-g--i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A 72 (103)
T 2dng_A 23 LPFNTVQGDIDAIFKDL-S--IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEA 72 (103)
T ss_dssp CCTTCCHHHHHHHTTTS-C--EEEEEEEECSSSCSEEEEEEEEESSHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhC-C--ceEEEEeecCCCCccceEEEEEECCHHHHHHH
Confidence 46689999999999886 6 88888776553 22 2599999866554443
No 90
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.03 E-value=50 Score=21.80 Aligned_cols=51 Identities=16% Similarity=0.324 Sum_probs=33.5
Q ss_pred EEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCee--eEEEEcCCCCcHHHH
Q 031815 93 VFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTK--KAYVRLTPDSDALDV 145 (152)
Q Consensus 93 vF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~K--KAyV~L~~d~daldv 145 (152)
+--++...+..+|++.++. || .|..|..+..+.|.- -|||.+....+|...
T Consensus 30 V~nlp~~~t~~~l~~~F~~-~G-~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A 82 (114)
T 1x5o_A 30 ISNLPLSMDEQELENMLKP-FG-QVISTRILRDSSGTSRGVGFARMESTEKCEAV 82 (114)
T ss_dssp EESCCTTCCHHHHHHTTTT-TS-CEEEEEEEECSSSCEEEEEEEEESCHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHh-cC-CEEEEEEEECCCCCcceEEEEEECCHHHHHHH
Confidence 3335667899998888776 44 466777666554432 389998866555443
No 91
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=33.83 E-value=89 Score=23.31 Aligned_cols=54 Identities=9% Similarity=-0.001 Sum_probs=36.2
Q ss_pred EEEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCee--eEEEEcCCCCcHHHHHH
Q 031815 92 LVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTK--KAYVRLTPDSDALDVAN 147 (152)
Q Consensus 92 lvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~K--KAyV~L~~d~daldvan 147 (152)
++--++..++..+|++.+.. ||- |..|......+|.- =|||.+....+|.....
T Consensus 113 ~V~nLp~~~t~~~L~~~F~~-~G~-v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~ 168 (193)
T 2voo_A 113 YIKGFPTDATLDDIKEWLED-KGQ-VLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE 168 (193)
T ss_dssp EEECCCTTCCHHHHHHHHTT-SCC-EEEEEEEECTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred EecCCCCcCCHHHHHHHHhc-CCC-EEEEEEEECCCCCcccEEEEEECCHHHHHHHHH
Confidence 34445678999999998887 563 77777665444322 49999987766655443
No 92
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=33.67 E-value=51 Score=23.04 Aligned_cols=47 Identities=23% Similarity=0.321 Sum_probs=34.2
Q ss_pred EEecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHH
Q 031815 95 IVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDV 145 (152)
Q Consensus 95 ~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~KKAyV~L~~d~daldv 145 (152)
-++...+..+|++.++. || .|..|..+..+.| -|||.+....+|...
T Consensus 80 nl~~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~g--~afV~f~~~~~a~~A 126 (150)
T 2i2y_A 80 NLGNNGNKTELERAFGY-YG-PLRSVWVARNPPG--FAFVEFEDPRDAADA 126 (150)
T ss_dssp SCCSCCSCHHHHHHHHH-HS-CEEEEEECSSSCS--EEEEEESSHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHh-hC-CEEEEEEeeCCCc--EEEEEECCHHHHHHH
Confidence 35668899999999988 56 5777776655456 499999876665443
No 93
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.64 E-value=95 Score=19.97 Aligned_cols=54 Identities=9% Similarity=0.178 Sum_probs=35.4
Q ss_pred CeEEEE--EecCCCHHHHHHHHHhHhCCceeeEEEeeCCCC-eeeEEEEcCCCCcHHHH
Q 031815 90 NTLVFI--VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDG-TKKAYVRLTPDSDALDV 145 (152)
Q Consensus 90 NtlvF~--Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g-~KKAyV~L~~d~daldv 145 (152)
++-+|+ ++...+..+|++.++.+ | .|..|..+..+++ .--|||.+....+|...
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~-G-~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A 71 (103)
T 2cqi_A 15 PRTLYVGNLSRDVTEVLILQLFSQI-G-PCKSCKMITEHTSNDPYCFVEFYEHRDAAAA 71 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHH-S-CEEEEEEECCCCSSCCEEEEEESSHHHHHHH
T ss_pred CCEEEEeCCCccCCHHHHHHHHHhc-C-CEeEEEEEecCCCCCCEEEEEECCHHHHHHH
Confidence 344455 45678999999999884 5 4666666554332 22599999866665443
No 94
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=33.61 E-value=53 Score=20.87 Aligned_cols=35 Identities=6% Similarity=0.121 Sum_probs=30.8
Q ss_pred CeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEee
Q 031815 90 NTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI 124 (152)
Q Consensus 90 NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli 124 (152)
.++.+.|+...+=.++|+.++...++.+.....+.
T Consensus 18 ~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~ 52 (87)
T 1wh3_A 18 GSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEF 52 (87)
T ss_dssp EEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEE
T ss_pred CEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEE
Confidence 57889999999999999999999999988777653
No 95
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=33.58 E-value=83 Score=19.21 Aligned_cols=54 Identities=17% Similarity=0.317 Sum_probs=36.1
Q ss_pred EEEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCC-Ce--eeEEEEcCCCCcHHHHHH
Q 031815 92 LVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-GT--KKAYVRLTPDSDALDVAN 147 (152)
Q Consensus 92 lvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~-g~--KKAyV~L~~d~daldvan 147 (152)
++--++...+..+|++.++. || .|..|..+..+. |. --|||.+....+|.....
T Consensus 5 ~V~nlp~~~t~~~l~~~f~~-~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~ 61 (83)
T 3md1_A 5 FVGDLNVNVDDETLRNAFKD-FP-SYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMD 61 (83)
T ss_dssp EEECCCTTCCHHHHHHHHTT-ST-TEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHH
Confidence 34445678899999998876 55 577777665533 32 249999987766655443
No 96
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.57 E-value=61 Score=20.07 Aligned_cols=36 Identities=11% Similarity=0.125 Sum_probs=31.0
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEee
Q 031815 89 NNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI 124 (152)
Q Consensus 89 ~NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli 124 (152)
..++.+.|+...+=.++|+.++..+|+.+.....+.
T Consensus 17 g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~ 52 (81)
T 2dzi_A 17 GRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLF 52 (81)
T ss_dssp SCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEE
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE
Confidence 357889999999999999999999999887776654
No 97
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.39 E-value=72 Score=21.13 Aligned_cols=51 Identities=8% Similarity=0.145 Sum_probs=33.4
Q ss_pred EEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCC-Ce--eeEEEEcCCCCcHHHH
Q 031815 93 VFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-GT--KKAYVRLTPDSDALDV 145 (152)
Q Consensus 93 vF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~-g~--KKAyV~L~~d~daldv 145 (152)
+--++...+..+|++.++. |+ .|..|..+..+. |. --|||.+....+|...
T Consensus 22 V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A 75 (116)
T 2cqd_A 22 VGGLPYHTTDASLRKYFEG-FG-DIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 75 (116)
T ss_dssp EECCCSSCCHHHHHHHHHT-TS-CEEEEEESCCSSSCCCCSEEEEEESSHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHh-CC-CeeEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 3335668999999999987 45 366776654432 11 1599999866555443
No 98
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=33.17 E-value=64 Score=21.66 Aligned_cols=45 Identities=13% Similarity=0.105 Sum_probs=31.4
Q ss_pred EecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHH
Q 031815 96 VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDV 145 (152)
Q Consensus 96 Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~KKAyV~L~~d~daldv 145 (152)
++...+..+|++.++. || .|..|... ...|+ |||.+....+|...
T Consensus 18 Lp~~~te~~L~~~F~~-~G-~i~~v~i~-~~~g~--afV~f~~~~~A~~A 62 (111)
T 1whx_A 18 LPAGTLAAEIQETFSR-FG-SLGRVLLP-EGGIT--AIVEFLEPLEARKA 62 (111)
T ss_dssp CCTTCCHHHHHHHHHT-TS-CEEEEECC-SSSSC--EEEEESCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHh-cC-CEEEEEEe-CCCCE--EEEEeCCHHHHHHH
Confidence 5678999999999987 56 45555533 33454 99999876665443
No 99
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=33.02 E-value=1.4e+02 Score=22.39 Aligned_cols=46 Identities=15% Similarity=0.307 Sum_probs=37.5
Q ss_pred CeEEEEE----ecCCCHHHHHHHHHhHhCCceeeEEEeeCCCC---eeeEEEEcC
Q 031815 90 NTLVFIV----DIRADKKKIKDAVKKMYDIQAKKVNTLIRPDG---TKKAYVRLT 137 (152)
Q Consensus 90 NtlvF~V----d~kAnK~qIKqAvekly~VkV~kVNTli~~~g---~KKAyV~L~ 137 (152)
+-||.-. +...+-.+|+++|.. || +|..++...-|.. .==++|+..
T Consensus 4 kI~VgnL~~~~~~~tte~~Lk~~Fs~-fG-eV~~~~li~Dp~Tg~slGfgfVef~ 56 (136)
T 2j8a_A 4 EIVVYPAQDSTTTNIQDISIKNYFKK-YG-EISHFEAFNDPNSALPLHVYLIKYA 56 (136)
T ss_dssp EEEEEESSSSCCCCCCHHHHHHHHHT-TS-CCSEEEEEECTTTCCEEEEEEEECC
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHh-cC-CeEEEEEEecCCCCceeeEEEEEEC
Confidence 3567777 889999999999996 89 9999999988862 223889998
No 100
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.99 E-value=66 Score=20.78 Aligned_cols=51 Identities=10% Similarity=0.063 Sum_probs=34.3
Q ss_pred EEecCCCHHHHHHHHHhHhCCceeeEEEeeCCC-Cee--eEEEEcCCCCcHHHHHH
Q 031815 95 IVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-GTK--KAYVRLTPDSDALDVAN 147 (152)
Q Consensus 95 ~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~-g~K--KAyV~L~~d~daldvan 147 (152)
-++..++..+|++.++. || .|..|..+..+. |.- -|||.+....+|.....
T Consensus 22 nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 75 (105)
T 1x5u_A 22 GLDEKVSEPLLWELFLQ-AG-PVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 75 (105)
T ss_dssp CCCTTCCHHHHHHHHHT-TS-CEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHh-cC-CeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHH
Confidence 35668999999999988 45 566776655432 211 49999987766555443
No 101
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=32.97 E-value=63 Score=20.92 Aligned_cols=49 Identities=16% Similarity=0.229 Sum_probs=33.3
Q ss_pred EecCCCHHHHHHHHHhHhCCceeeEEEeeCCC-C--eeeEEEEcCCCCcHHHHH
Q 031815 96 VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-G--TKKAYVRLTPDSDALDVA 146 (152)
Q Consensus 96 Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~-g--~KKAyV~L~~d~daldva 146 (152)
++...+..+|++.++++ | .|..|..+..+. | .--|||.+....+|....
T Consensus 21 lp~~~t~~~l~~~F~~~-G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~ 72 (106)
T 2dgp_A 21 IPRNLDEKDLKPLFEEF-G-KIYELTVLKDRFTGMHKGCAFLTYCERESALKAQ 72 (106)
T ss_dssp CCTTCCHHHHHHHHHHH-S-CCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhc-C-CeeEEEEEecCCCCCcceEEEEEECCHHHHHHHH
Confidence 45679999999999985 4 466676655432 1 124999998766655443
No 102
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=32.50 E-value=66 Score=19.70 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=30.8
Q ss_pred CeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEee
Q 031815 90 NTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI 124 (152)
Q Consensus 90 NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli 124 (152)
.++.+.|+...+=.++|+.++...|+.+.....+.
T Consensus 14 ~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~ 48 (77)
T 2bwf_A 14 DKWEVNVAPESTVLQFKEAINKANGIPVANQRLIY 48 (77)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEE
Confidence 47889999999999999999999999988877653
No 103
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.46 E-value=70 Score=22.21 Aligned_cols=51 Identities=10% Similarity=0.209 Sum_probs=35.1
Q ss_pred EEEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHHHH
Q 031815 92 LVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVAN 147 (152)
Q Consensus 92 lvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~KKAyV~L~~d~daldvan 147 (152)
||=-++..++..++++.++. || +|..|..+ +..| =|||.+....+|.+...
T Consensus 20 fV~nLp~~vte~dL~~lF~~-fG-~V~~v~i~-~~kG--faFVeF~~~~~A~~Ai~ 70 (105)
T 1sjq_A 20 HIRKLPIDVTEGEVISLGLP-FG-KVTNLLML-KGKN--QAFIEMNTEEAANTMVN 70 (105)
T ss_dssp EECSCCTTSCHHHHHHHHHH-HC-CEEEEEEE-TTTT--EEEEEESSHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHh-cC-CEEEEEEE-cCCC--EEEEEECCHHHHHHHHH
Confidence 33345567899999999987 67 47777754 3334 49999987766655443
No 104
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=32.26 E-value=1.2e+02 Score=20.75 Aligned_cols=57 Identities=9% Similarity=0.083 Sum_probs=39.8
Q ss_pred CeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCC-CCee--eEEEEcCCCCcHHHHHHh
Q 031815 90 NTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRP-DGTK--KAYVRLTPDSDALDVANK 148 (152)
Q Consensus 90 NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~-~g~K--KAyV~L~~d~daldvank 148 (152)
.-++--++...+..+|++.++. || .|..|..+..+ .|.- -|||++....+|......
T Consensus 96 ~l~v~nlp~~~t~~~l~~~f~~-~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (172)
T 2g4b_A 96 KLFIGGLPNYLNDDQVKELLTS-FG-PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 155 (172)
T ss_dssp CEEEECCCTTCCHHHHHHHHHT-TS-CEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHH
T ss_pred EEEEEcCCCcCCHHHHHHHHHh-cC-CceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 3445556678999999999997 55 46777776654 3433 399999988877665443
No 105
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=31.52 E-value=41 Score=22.46 Aligned_cols=55 Identities=13% Similarity=0.166 Sum_probs=39.2
Q ss_pred EEEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCC-Cee--eEEEEcCCCCcHHHHH
Q 031815 92 LVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-GTK--KAYVRLTPDSDALDVA 146 (152)
Q Consensus 92 lvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~-g~K--KAyV~L~~d~daldva 146 (152)
++--++...+..+|++.++..=.+.+..|....-+. |.- =|||.+....+|....
T Consensus 13 fV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai 70 (95)
T 2lkz_A 13 ILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLL 70 (95)
T ss_dssp EEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHH
T ss_pred EEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHH
Confidence 444577889999999999885456888887765432 211 3999999877665544
No 106
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=31.49 E-value=76 Score=23.72 Aligned_cols=52 Identities=15% Similarity=0.232 Sum_probs=36.5
Q ss_pred CeEEEEE--ec-CCCHHHHHHHHHhHhCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHH
Q 031815 90 NTLVFIV--DI-RADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDV 145 (152)
Q Consensus 90 NtlvF~V--d~-kAnK~qIKqAvekly~VkV~kVNTli~~~g~KKAyV~L~~d~daldv 145 (152)
+.-+|+- +. .++..+|++.++. ||- |..|..+....|+ |||.+....+|...
T Consensus 34 ~~~l~V~nLp~~~~te~~L~~~F~~-~G~-i~~v~i~~~~~g~--afV~F~~~~~A~~A 88 (229)
T 2adc_A 34 NSVLLVSNLNPERVTPQSLFILFGV-YGD-VQRVKILFNKKEN--ALVQMADGNQAQLA 88 (229)
T ss_dssp CSEEEEESCCTTTCCHHHHHHHHHH-HTC-EEEEEECCTTSCC--EEEEESCHHHHHHH
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHh-CCC-eEEEEEEECCCCE--EEEEECCHHHHHHH
Confidence 3444554 45 7899999999987 453 7777777655565 99999877665543
No 107
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=31.12 E-value=55 Score=25.12 Aligned_cols=50 Identities=18% Similarity=0.203 Sum_probs=33.8
Q ss_pred EecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCe--eeEEEEcCCCCcHHHHH
Q 031815 96 VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGT--KKAYVRLTPDSDALDVA 146 (152)
Q Consensus 96 Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~--KKAyV~L~~d~daldva 146 (152)
++...+..+|++.+.. ||+.|..|..+..+.|. --|||.+....+|....
T Consensus 125 lp~~~t~~~l~~~f~~-~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~ 176 (292)
T 2ghp_A 125 FPPSYTQRNIRDLLQD-INVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCV 176 (292)
T ss_dssp CCTTCCHHHHHHHHHH-TTCCCCEEECC-------CCEEEEECSSHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH-hCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHH
Confidence 4568999999999988 68778888776544321 23999998776655443
No 108
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=30.93 E-value=1.4e+02 Score=20.98 Aligned_cols=51 Identities=10% Similarity=0.105 Sum_probs=36.3
Q ss_pred EEecCCCHHHHHHHHHhHhCCceeeEEEeeCC-CC--eeeEEEEcCCCCcHHHHHH
Q 031815 95 IVDIRADKKKIKDAVKKMYDIQAKKVNTLIRP-DG--TKKAYVRLTPDSDALDVAN 147 (152)
Q Consensus 95 ~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~-~g--~KKAyV~L~~d~daldvan 147 (152)
-++...+..+|++.++. || .|..|..+..+ .| .--|||.+....+|.....
T Consensus 121 nl~~~~~~~~l~~~f~~-~G-~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 174 (198)
T 2yh0_A 121 GLPNYLNDDQVKELLTS-FG-PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 174 (198)
T ss_dssp CCCTTCCHHHHHHHHHT-BS-CEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH-cC-CccEEEEeecCCCCCcceEEEEEECCHHHHHHHHH
Confidence 34567999999999988 55 46777776654 33 2349999998877765544
No 109
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=30.24 E-value=74 Score=20.94 Aligned_cols=36 Identities=11% Similarity=0.213 Sum_probs=31.1
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEee
Q 031815 89 NNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI 124 (152)
Q Consensus 89 ~NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli 124 (152)
..++.+.|+...+=.++|+.|+..+++.+.....+.
T Consensus 10 g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~ 45 (98)
T 1yx5_B 10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (98)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEE
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE
Confidence 357889999999999999999999999988777654
No 110
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=29.69 E-value=16 Score=26.61 Aligned_cols=46 Identities=22% Similarity=0.354 Sum_probs=32.8
Q ss_pred EecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCee--eEEEEcCCCCcHHH
Q 031815 96 VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTK--KAYVRLTPDSDALD 144 (152)
Q Consensus 96 Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~K--KAyV~L~~d~dald 144 (152)
++..++..+|++.++. |+ +..|..+..++|.- -|||.+....+|..
T Consensus 54 Lp~~~te~dL~~~F~~-~G--i~~v~i~~d~~g~srGfaFV~F~~~e~A~~ 101 (139)
T 2hgn_A 54 LPYKATENDIYNFFSP-LN--PVRVHIEIGPDGRVTGEADVEFATHEEAVA 101 (139)
T ss_dssp CCTTCCHHHHHHHHCS-CC--CSEEECCCSSSSCSSCCCEEECSHHHHHHH
T ss_pred CCCCCCHHHHHHHHHh-cC--CeEEEEEECCCCCCceEEEEEeCCHHHHHH
Confidence 5668999999999988 67 34777766555432 39999986655443
No 111
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=29.63 E-value=96 Score=20.62 Aligned_cols=50 Identities=4% Similarity=0.243 Sum_probs=34.0
Q ss_pred EEecCCCHHHHHHHHHhHhCCceeeEEEeeCCC-Ce--eeEEEEcCCCCcHHHHH
Q 031815 95 IVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-GT--KKAYVRLTPDSDALDVA 146 (152)
Q Consensus 95 ~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~-g~--KKAyV~L~~d~daldva 146 (152)
-++...+..+|++.++. || .|..|..+..+. |. --|||.+....+|....
T Consensus 33 nLp~~~te~~l~~~F~~-~G-~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai 85 (108)
T 2jrs_A 33 SLHFNITEDMLRGIFEP-FG-RIESIQLMMDSETGRSKGYGFITFSDSECAKKAL 85 (108)
T ss_dssp CCCSSCCHHHHHHHHTT-TS-CEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHh-cC-CeEEEEEEEcCCCCccceEEEEEECCHHHHHHHH
Confidence 34567899999999876 55 477777765443 22 25999998776655443
No 112
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=29.62 E-value=79 Score=24.19 Aligned_cols=51 Identities=12% Similarity=0.283 Sum_probs=37.5
Q ss_pred EecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCee--eEEEEcCCCCcHHHHHHh
Q 031815 96 VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTK--KAYVRLTPDSDALDVANK 148 (152)
Q Consensus 96 Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~K--KAyV~L~~d~daldvank 148 (152)
++...+..+|++.+.. || .|..|..+..+.|.. -|||.+....+|......
T Consensus 104 l~~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~ 156 (261)
T 3sde_A 104 LSPVVSNELLEQAFSQ-FG-PVEKAVVVVDDRGRATGKGFVEFAAKPPARKALER 156 (261)
T ss_dssp CCTTCCHHHHHHHHGG-GS-CEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHh-cC-CeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 4567899999999976 67 788888776666543 489999877766555444
No 113
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=29.09 E-value=1e+02 Score=19.63 Aligned_cols=52 Identities=10% Similarity=0.126 Sum_probs=34.2
Q ss_pred eEEEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHHHH
Q 031815 91 TLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVAN 147 (152)
Q Consensus 91 tlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~KKAyV~L~~d~daldvan 147 (152)
-++--++...+..+|++.++. || .|..|.... ..| -|||.+....+|.....
T Consensus 20 l~V~nlp~~~t~~~l~~~F~~-~G-~v~~v~~~~-~~g--~afV~f~~~~~A~~A~~ 71 (97)
T 1why_A 20 LWVGGLGPNTSLAALAREFDR-FG-SIRTIDHVK-GDS--FAYIQYESLDAAQAACA 71 (97)
T ss_dssp EEEECCCSSCCHHHHHHHHHT-TS-CEEEEEECS-SSC--CEEEEESSHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEeC-CCC--EEEEEECCHHHHHHHHH
Confidence 334446678899999999987 45 356665442 233 69999987766655433
No 114
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=28.34 E-value=70 Score=20.79 Aligned_cols=36 Identities=8% Similarity=0.169 Sum_probs=31.6
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEee
Q 031815 89 NNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI 124 (152)
Q Consensus 89 ~NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli 124 (152)
..++.+.|+...+=.++|+.++...++.+.....+.
T Consensus 19 G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 54 (88)
T 1sif_A 19 GKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIF 54 (88)
T ss_dssp SCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEE
Confidence 368889999999999999999999999988877654
No 115
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=28.25 E-value=94 Score=21.27 Aligned_cols=36 Identities=11% Similarity=0.213 Sum_probs=31.7
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEee
Q 031815 89 NNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI 124 (152)
Q Consensus 89 ~NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli 124 (152)
..++.|.|+...+=.++|+.++..+++.+.....+.
T Consensus 45 G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 80 (111)
T 3vdz_A 45 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 80 (111)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEE
Confidence 468899999999999999999999999998876653
No 116
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=28.09 E-value=1.1e+02 Score=21.78 Aligned_cols=53 Identities=15% Similarity=0.255 Sum_probs=37.0
Q ss_pred EEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCC-C--eeeEEEEcCCCCcHHHHHH
Q 031815 93 VFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-G--TKKAYVRLTPDSDALDVAN 147 (152)
Q Consensus 93 vF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~-g--~KKAyV~L~~d~daldvan 147 (152)
+--++...+..+|++.++. || .|..|..+..+. | .--|||.+....+|.....
T Consensus 130 v~nlp~~~t~~~l~~~f~~-~G-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 185 (216)
T 2qfj_A 130 VASVHQDLSDDDIKSVFEA-FG-KIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVS 185 (216)
T ss_dssp EECCCTTCCHHHHHHHHTT-SS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred EeCCCCcCCHHHHHHHHhc-cC-CeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 3345667999999999987 56 677887776542 2 2259999987766655443
No 117
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.74 E-value=74 Score=20.37 Aligned_cols=48 Identities=6% Similarity=0.187 Sum_probs=32.9
Q ss_pred EEecCCCHHHHHHHHHhHhCCceeeEEEeeCCC-C--eeeEEEEcCCCCcHHH
Q 031815 95 IVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-G--TKKAYVRLTPDSDALD 144 (152)
Q Consensus 95 ~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~-g--~KKAyV~L~~d~dald 144 (152)
-++...+..+|++.++. || .|..|..+..+. | .--|||.+....+|..
T Consensus 17 nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ 67 (99)
T 2dgs_A 17 GIPHNCGETELREYFKK-FG-VVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 67 (99)
T ss_dssp SCCSSCCHHHHHHHHSS-SS-CEEEEEECCCTTTCSCCSEEEEEESSHHHHHH
T ss_pred CCCCCCCHHHHHHHHHh-cC-CeEEEEEEeCCCCCCCCceEEEEECCHHHHHH
Confidence 35668999999999988 55 577777665432 2 1249999986655443
No 118
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=27.53 E-value=1e+02 Score=19.11 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=30.8
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEe
Q 031815 89 NNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTL 123 (152)
Q Consensus 89 ~NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTl 123 (152)
..++.|.|+...+=.++|+++....|+.+.....+
T Consensus 13 g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~ 47 (79)
T 2uyz_B 13 SSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFL 47 (79)
T ss_dssp CCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEE
Confidence 46889999999999999999999999998877654
No 119
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.29 E-value=29 Score=22.01 Aligned_cols=47 Identities=15% Similarity=0.087 Sum_probs=32.5
Q ss_pred EEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCeeeEEEEcCCCCcHH
Q 031815 93 VFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDAL 143 (152)
Q Consensus 93 vF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~KKAyV~L~~d~dal 143 (152)
+--++...+..+|++.++. || .|..|..+....|+ |||.+....+|.
T Consensus 10 V~nLp~~~te~~l~~~F~~-~G-~i~~v~i~~~~~g~--afV~f~~~~~a~ 56 (88)
T 1wf0_A 10 VGRCTGDMTEDELREFFSQ-YG-DVMDVFIPKPFRAF--AFVTFADDQIAQ 56 (88)
T ss_dssp EESCCSSSCHHHHHHHSTT-TS-CCCEEECCSSCCSC--CEEECSCHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHH-cC-CeeEEEEecCCCCE--EEEEECCHHHHH
Confidence 3345678999999998876 45 36667665444564 999998766653
No 120
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=27.25 E-value=1.1e+02 Score=20.47 Aligned_cols=35 Identities=11% Similarity=0.259 Sum_probs=31.0
Q ss_pred CeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEee
Q 031815 90 NTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI 124 (152)
Q Consensus 90 NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli 124 (152)
.++.+.|+...+=.++|+.|+...|+.+.....+.
T Consensus 35 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 69 (101)
T 2klc_A 35 EKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIF 69 (101)
T ss_dssp CEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEE
Confidence 47889999999999999999999999988877654
No 121
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=27.24 E-value=1.1e+02 Score=19.39 Aligned_cols=49 Identities=10% Similarity=0.246 Sum_probs=33.3
Q ss_pred EecCCCHHHHHHHHHhHhCCceeeEEEeeCCC-C--eeeEEEEcCCCCcHHHHH
Q 031815 96 VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-G--TKKAYVRLTPDSDALDVA 146 (152)
Q Consensus 96 Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~-g--~KKAyV~L~~d~daldva 146 (152)
++...+..+|++.+.. || .|..|..+..+. | .--|||.+....+|....
T Consensus 10 Lp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai 61 (96)
T 2x1f_A 10 IPYDQTEEQILDLCSN-VG-PVINLKMMFDPQTGRSKGYAFIEFRDLESSASAV 61 (96)
T ss_dssp CCTTCCHHHHHHHHHT-TS-CEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHh-cC-CEEEEEEEeCCCCCccceEEEEEECCHHHHHHHH
Confidence 4567899999999987 45 466776654432 2 224999998776665544
No 122
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=27.23 E-value=64 Score=21.50 Aligned_cols=23 Identities=4% Similarity=0.242 Sum_probs=20.1
Q ss_pred eEEEEEecCCCHHHHHHHHHhHh
Q 031815 91 TLVFIVDIRADKKKIKDAVKKMY 113 (152)
Q Consensus 91 tlvF~Vd~kAnK~qIKqAvekly 113 (152)
-++|++++..+-.|++..++++=
T Consensus 47 E~m~Il~P~l~ee~~~~~vek~~ 69 (77)
T 3zzp_A 47 EVNIVLNPNLDQSQLQNEKEIIQ 69 (77)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
Confidence 45899999999999999999864
No 123
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=26.99 E-value=1.1e+02 Score=20.55 Aligned_cols=34 Identities=9% Similarity=0.222 Sum_probs=29.8
Q ss_pred eEEEEEecCCCHHHHHHHHHhHhCCceeeEEEee
Q 031815 91 TLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI 124 (152)
Q Consensus 91 tlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli 124 (152)
++.|.|+...+=.++|+.|+..+++.+.....+.
T Consensus 28 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 61 (106)
T 1wx7_A 28 KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF 61 (106)
T ss_dssp EEEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEE
T ss_pred cEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE
Confidence 5688999999999999999999999988777653
No 124
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=26.59 E-value=96 Score=20.20 Aligned_cols=35 Identities=11% Similarity=0.291 Sum_probs=30.3
Q ss_pred CeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEee
Q 031815 90 NTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI 124 (152)
Q Consensus 90 NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli 124 (152)
.++.|.|+...+=.++|+.|+...++.+.....+.
T Consensus 27 ~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 61 (96)
T 1wx8_A 27 DCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIF 61 (96)
T ss_dssp SEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 57889999999999999999999999887765543
No 125
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=26.18 E-value=1.1e+02 Score=19.73 Aligned_cols=36 Identities=11% Similarity=0.137 Sum_probs=31.4
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEee
Q 031815 89 NNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI 124 (152)
Q Consensus 89 ~NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli 124 (152)
..++.+.|+...+=.++|+.++...|+.+.....+.
T Consensus 14 g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 49 (88)
T 2hj8_A 14 GRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 49 (88)
T ss_dssp SCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEES
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEE
Confidence 368889999999999999999999999988777653
No 126
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=26.03 E-value=1.2e+02 Score=20.72 Aligned_cols=54 Identities=19% Similarity=0.236 Sum_probs=35.9
Q ss_pred EEEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCC-CCe--eeEEEEcCCCCcHHHHHH
Q 031815 92 LVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRP-DGT--KKAYVRLTPDSDALDVAN 147 (152)
Q Consensus 92 lvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~-~g~--KKAyV~L~~d~daldvan 147 (152)
++--++...+..+|++.++. || .|..|..+..+ +|. --|||.+....+|.....
T Consensus 93 ~v~nl~~~~t~~~l~~~f~~-~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 149 (168)
T 1b7f_A 93 YVTNLPRTITDDQLDTIFGK-YG-SIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 149 (168)
T ss_dssp EEESCCTTCCHHHHHHHHTS-SS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHhhhc-CC-cEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHH
Confidence 33345667999999999987 45 56677766544 332 249999987766655443
No 127
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=26.00 E-value=1.2e+02 Score=19.09 Aligned_cols=53 Identities=9% Similarity=0.164 Sum_probs=35.9
Q ss_pred EEEEEecCCCHHHHHHHHHhHhCC-ceeeEEEeeCCC-Cee--eEEEEcCCCCcHHHH
Q 031815 92 LVFIVDIRADKKKIKDAVKKMYDI-QAKKVNTLIRPD-GTK--KAYVRLTPDSDALDV 145 (152)
Q Consensus 92 lvF~Vd~kAnK~qIKqAvekly~V-kV~kVNTli~~~-g~K--KAyV~L~~d~daldv 145 (152)
++--++..++..+|++.++. ||+ +|..|..+..+. |.- =|||.+....+|...
T Consensus 5 ~V~nL~~~~t~~~l~~~F~~-~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~A 61 (90)
T 3p5t_L 5 YIGNLTWWTTDEDLTEAVHS-LGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKL 61 (90)
T ss_dssp EEESCCTTCCHHHHHHHHHT-TTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHH-hCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHH
Confidence 33445668899999999987 564 788888876542 322 389999866655443
No 128
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.62 E-value=75 Score=20.08 Aligned_cols=51 Identities=8% Similarity=0.063 Sum_probs=33.7
Q ss_pred eEEEEEecCCCHHHHHHHHHhHhC-CceeeEEEeeCCCCeeeEEEEcCCCCcHHHHHH
Q 031815 91 TLVFIVDIRADKKKIKDAVKKMYD-IQAKKVNTLIRPDGTKKAYVRLTPDSDALDVAN 147 (152)
Q Consensus 91 tlvF~Vd~kAnK~qIKqAvekly~-VkV~kVNTli~~~g~KKAyV~L~~d~daldvan 147 (152)
-++--++...+..+|++.++.+=. +....+ ...|+ |||.+....+|.....
T Consensus 11 l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~----~~~g~--afV~f~~~~~A~~A~~ 62 (93)
T 2cqh_A 11 LYIGNLSPAVTADDLRQLFGDRKLPLAGQVL----LKSGY--AFVDYPDQNWAIRAIE 62 (93)
T ss_dssp EEEECCCTTCCHHHHHHHHHHTTCCCSSCEE----EETTE--EEECCSCHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHHcCCceEEEEE----cCCCE--EEEEECCHHHHHHHHH
Confidence 344446778999999999988544 444444 23454 9999987666555443
No 129
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.56 E-value=1.3e+02 Score=19.10 Aligned_cols=54 Identities=13% Similarity=0.185 Sum_probs=36.0
Q ss_pred eEEEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCC-CC--eeeEEEEcCCCCcHHHHH
Q 031815 91 TLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRP-DG--TKKAYVRLTPDSDALDVA 146 (152)
Q Consensus 91 tlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~-~g--~KKAyV~L~~d~daldva 146 (152)
-++--++...+..+|++.++. || .|..|..+..+ .| .--|||.+....+|....
T Consensus 11 l~V~nlp~~~~~~~l~~~f~~-~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 67 (104)
T 1p1t_A 11 VFVGNIPYEATEEQLKDIFSE-VG-PVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 67 (104)
T ss_dssp EEEESCCTTSCHHHHHHHHHT-TS-CCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHH
T ss_pred EEEeCCCCcCCHHHHHHHHHh-cC-CeeEEEEEeCCCCCccceEEEEEECCHHHHHHHH
Confidence 344446678999999999987 55 46667666543 22 235999998766655443
No 130
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=25.24 E-value=1.4e+02 Score=20.38 Aligned_cols=33 Identities=15% Similarity=0.303 Sum_probs=26.6
Q ss_pred eEEEEEecCCCHHHHHHHHHhH------hCCceeeEEEe
Q 031815 91 TLVFIVDIRADKKKIKDAVKKM------YDIQAKKVNTL 123 (152)
Q Consensus 91 tlvF~Vd~kAnK~qIKqAvekl------y~VkV~kVNTl 123 (152)
-++|++++..+..|++..++++ .|-.|.++..+
T Consensus 5 E~~~Il~p~l~~e~~~~~~~~~~~~i~~~gg~i~~~e~w 43 (101)
T 1cqm_A 5 EVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVAIL 43 (101)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEee
Confidence 4689999999999999988887 46667777654
No 131
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=25.14 E-value=79 Score=20.85 Aligned_cols=35 Identities=20% Similarity=0.193 Sum_probs=31.0
Q ss_pred CeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEee
Q 031815 90 NTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI 124 (152)
Q Consensus 90 NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli 124 (152)
.++.|.|+...+=.++|+.++...++.+.....+.
T Consensus 28 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 62 (93)
T 2l7r_A 28 ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLL 62 (93)
T ss_dssp SEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEE
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEE
Confidence 57889999999999999999999999988777654
No 132
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=25.00 E-value=1.2e+02 Score=19.96 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=33.1
Q ss_pred EEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHH
Q 031815 93 VFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDV 145 (152)
Q Consensus 93 vF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~KKAyV~L~~d~daldv 145 (152)
+--++..++..+|++.+.. || .|..|..+......--|||.+....+|...
T Consensus 13 V~nlp~~~t~~~l~~~F~~-~G-~v~~v~i~~~~~~~g~afV~f~~~~~A~~A 63 (115)
T 3lqv_A 13 IRNLPYKITAEEMYDIFGK-YG-PIRQIRVGNTPETRGTAYVVYEDIFDAKNA 63 (115)
T ss_dssp EESCCTTCCHHHHHHHHHT-TS-CEEEEEEECSTTTTTCEEEEESSHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHh-cC-CeEEEEEeeCCCCCcEEEEEECCHHHHHHH
Confidence 3345668899999999887 44 355665554333323599999876665443
No 133
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=24.42 E-value=1.3e+02 Score=20.17 Aligned_cols=34 Identities=9% Similarity=0.222 Sum_probs=30.0
Q ss_pred eEEEEEecCCCHHHHHHHHHhHhCCceeeEEEee
Q 031815 91 TLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI 124 (152)
Q Consensus 91 tlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli 124 (152)
++.+.|+...+=.++|+.|+...++.+.....+.
T Consensus 33 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 66 (100)
T 1yqb_A 33 KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF 66 (100)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred cEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE
Confidence 4688999999999999999999999988877654
No 134
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=24.30 E-value=84 Score=21.79 Aligned_cols=54 Identities=17% Similarity=0.274 Sum_probs=35.1
Q ss_pred EEEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCC-C--eeeEEEEcCCCCcHHHHHH
Q 031815 92 LVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-G--TKKAYVRLTPDSDALDVAN 147 (152)
Q Consensus 92 lvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~-g--~KKAyV~L~~d~daldvan 147 (152)
++--++..++..+|++.++. || .|..|..+..+. | .--|||.+....+|.....
T Consensus 50 ~V~nLp~~~te~~L~~~F~~-~G-~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~ 106 (129)
T 2kxn_B 50 GVFGLSLYTTERDLREVFSK-YG-PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKE 106 (129)
T ss_dssp CEETCTTSCCHHHHHHHHTT-TS-CEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHH
Confidence 34445677899999999887 45 466776654332 1 1259999987766554433
No 135
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.01 E-value=88 Score=21.98 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=29.2
Q ss_pred HHHHHHHHhHhCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHHHH
Q 031815 103 KKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVAN 147 (152)
Q Consensus 103 ~qIKqAvekly~VkV~kVNTli~~~g~KKAyV~L~~d~daldvan 147 (152)
.++.+.+.. || .|..||... + +++|++..+.+|+...+
T Consensus 39 ~~L~~~F~~-~G-~Vilvr~v~---d--~~fVtF~d~~sAl~AI~ 76 (95)
T 1ufw_A 39 TELMQTLGS-YG-TIVLVRINQ---G--QMLVTFADSHSALSVLD 76 (95)
T ss_dssp HHHHHHHHH-HS-CCSEEEEET---T--EEEEECSCSHHHHHHHH
T ss_pred HHHHHHHHH-CC-CEEEEEEec---C--cEEEEEcChHHHHHHHh
Confidence 668888888 78 777776653 1 29999999999887655
No 136
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=23.99 E-value=1.6e+02 Score=19.48 Aligned_cols=53 Identities=13% Similarity=0.208 Sum_probs=36.5
Q ss_pred CeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCC-CC--eeeEEEEcCCCCcHHH
Q 031815 90 NTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRP-DG--TKKAYVRLTPDSDALD 144 (152)
Q Consensus 90 NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~-~g--~KKAyV~L~~d~dald 144 (152)
.-++--++...+..+|++.++. || .|..|..+..+ .| .--|||.+....+|..
T Consensus 38 ~l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ 93 (124)
T 2jwn_A 38 SVYVGNVDYGSTAQDLEAHFSS-CG-SINRITILCDKFSGHPKGYAYIEFAERNSVDA 93 (124)
T ss_dssp EEEEEEECTTCCHHHHHHHHHT-TS-CEEEEEEEEECTTSSCEEEEEEEESSHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-cC-CEEEEEEEecCCCCCcccEEEEEECCHHHHHH
Confidence 3455557789999999999987 55 56777766543 22 3369999986655443
No 137
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.96 E-value=86 Score=20.08 Aligned_cols=52 Identities=15% Similarity=0.144 Sum_probs=33.3
Q ss_pred EEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCC-Ce--eeEEEEcCCCCcHHHHH
Q 031815 93 VFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-GT--KKAYVRLTPDSDALDVA 146 (152)
Q Consensus 93 vF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~-g~--KKAyV~L~~d~daldva 146 (152)
+--++...+..+|++.++. || .|..|..+..+. |. --|||.+....+|....
T Consensus 17 V~nLp~~~t~~~l~~~f~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 71 (102)
T 2cqb_A 17 VGGLAEEVDDKVLHAAFIP-FG-DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAI 71 (102)
T ss_dssp EESCCSSCCHHHHHHHHTT-TS-CCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHhhc-cC-CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH
Confidence 3335678999999999988 44 455666544322 21 24999998766655443
No 138
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.80 E-value=78 Score=21.31 Aligned_cols=52 Identities=12% Similarity=0.276 Sum_probs=33.7
Q ss_pred eEEEE--EecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHHHH
Q 031815 91 TLVFI--VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVAN 147 (152)
Q Consensus 91 tlvF~--Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~KKAyV~L~~d~daldvan 147 (152)
..+|+ ++..++..++++.++. || .|..|..+ ...| -|||.+....+|.....
T Consensus 16 ~~l~V~nLp~~~te~~L~~~F~~-fG-~v~~v~i~-~~kg--~aFVef~~~~~A~~Ai~ 69 (101)
T 2cq1_A 16 RVLHIRKLPGEVTETEVIALGLP-FG-KVTNILML-KGKN--QAFLELATEEAAITMVN 69 (101)
T ss_dssp SEEEEESCCTTCCHHHHHHTTTT-TS-CEEEEEEE-TTTT--EEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cC-CEEEEEEE-CCCC--EEEEEECCHHHHHHHHH
Confidence 34444 5567899999988876 56 46666443 2234 49999987766655443
No 139
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=23.21 E-value=38 Score=21.50 Aligned_cols=47 Identities=21% Similarity=0.214 Sum_probs=29.2
Q ss_pred EEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHH
Q 031815 93 VFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDV 145 (152)
Q Consensus 93 vF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~g~KKAyV~L~~d~daldv 145 (152)
+--++...+..++++.+++. .|..|... ...|+ |||.+....+|...
T Consensus 10 V~nLp~~~t~~~l~~~F~~~---~v~~~~i~-~~~g~--afV~f~~~~~a~~A 56 (88)
T 1wg1_A 10 VKNLPQDSNCQEVHDLLKDY---DLKYCYVD-RNKRT--AFVTLLNGEQAQNA 56 (88)
T ss_dssp EESCCSSCCHHHHHHHTCSS---CCCCEEEE-GGGTE--EEECCSCHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHhhC---CeEEEEEe-CCCcE--EEEEECCHHHHHHH
Confidence 33355678888888888776 44455442 44453 88888765554443
No 140
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=23.04 E-value=1.1e+02 Score=20.47 Aligned_cols=34 Identities=9% Similarity=0.080 Sum_probs=30.1
Q ss_pred CeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEe
Q 031815 90 NTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTL 123 (152)
Q Consensus 90 NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTl 123 (152)
.++.+.|+..++=.++|+.|+...++.+.....+
T Consensus 22 ~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~ 55 (102)
T 1v5o_A 22 VTFSLQVNPDFELSNFRVLCELESGVPAEEAQIV 55 (102)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEE
Confidence 5888999999999999999999999998776654
No 141
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=23.00 E-value=1.4e+02 Score=19.31 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=31.4
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEee
Q 031815 89 NNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI 124 (152)
Q Consensus 89 ~NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli 124 (152)
..++.+.|+...+=.++|+.++...|+.+..-..+.
T Consensus 20 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 55 (84)
T 2kk8_A 20 GSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIV 55 (84)
T ss_dssp SCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE
Confidence 468889999999999999999999999987776553
No 142
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=22.91 E-value=1.4e+02 Score=20.96 Aligned_cols=35 Identities=17% Similarity=0.296 Sum_probs=30.9
Q ss_pred CeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEee
Q 031815 90 NTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI 124 (152)
Q Consensus 90 NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli 124 (152)
.++.|.|+...+=.++|+.|+..+++.+.....+.
T Consensus 42 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 76 (125)
T 1j8c_A 42 EKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIF 76 (125)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEE
T ss_pred eEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEE
Confidence 57889999999999999999999999988777654
No 143
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=22.56 E-value=1.5e+02 Score=18.43 Aligned_cols=53 Identities=11% Similarity=0.189 Sum_probs=35.7
Q ss_pred EEEEEecCCCHHHHHHHHHhHhCCceeeEEEeeCCC-C--eeeEEEEcCCCCcHHHHHH
Q 031815 92 LVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-G--TKKAYVRLTPDSDALDVAN 147 (152)
Q Consensus 92 lvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~-g--~KKAyV~L~~d~daldvan 147 (152)
++--++...+..+|++.++. || .|..|.....+. | .--|||.+.... |.....
T Consensus 5 ~V~nLp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~ 60 (90)
T 2ki2_A 5 YVGNLVYSATSEQVKELFSQ-FG-KVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIA 60 (90)
T ss_dssp EEEEECTTSSHHHHTTTHHH-HT-CCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHH
T ss_pred EECCCCCCCCHHHHHHHHHh-cC-CEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHH
Confidence 45557788999999999988 45 456666554432 2 225999998765 655544
No 144
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=22.41 E-value=68 Score=21.82 Aligned_cols=36 Identities=3% Similarity=0.084 Sum_probs=31.3
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEee
Q 031815 89 NNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI 124 (152)
Q Consensus 89 ~NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli 124 (152)
..++.|.|+...+=.++|+.|+..+|+.+.....+.
T Consensus 11 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 46 (106)
T 3m62_B 11 KEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIY 46 (106)
T ss_dssp CCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEE
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE
Confidence 468889999999999999999999999998876553
No 145
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=22.41 E-value=1.1e+02 Score=19.99 Aligned_cols=45 Identities=13% Similarity=0.240 Sum_probs=31.0
Q ss_pred EecC-CCHHHHHHHHHhHhCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHHHH
Q 031815 96 VDIR-ADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVAN 147 (152)
Q Consensus 96 Vd~k-AnK~qIKqAvekly~VkV~kVNTli~~~g~KKAyV~L~~d~daldvan 147 (152)
++.. .+..+|++.++.+ | .|..|.. +.|+ |||.+....+|.....
T Consensus 35 l~~~~~t~~~l~~~F~~~-G-~v~~v~i---~~g~--afV~f~~~~~A~~A~~ 80 (110)
T 1wf1_A 35 LNTALVKKSDVETIFSKY-G-RVAGCSV---HKGY--AFVQYSNERHARAAVL 80 (110)
T ss_dssp CCCSSCCHHHHHHHHGGG-S-CCSEEEE---ETTE--EEEECSSSHHHHHHHH
T ss_pred CCcccCCHHHHHHHHHhC-C-CeEEEEE---eCCE--EEEEECCHHHHHHHHH
Confidence 4556 8899999999874 4 3444444 4564 9999988777665543
No 146
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=22.21 E-value=2e+02 Score=20.57 Aligned_cols=54 Identities=7% Similarity=0.107 Sum_probs=38.1
Q ss_pred eEEEEEecCCCHHHHHHHHHhHhCC-ceeeEEEeeCCC-Cee--eEEEEcCCCCcHHHH
Q 031815 91 TLVFIVDIRADKKKIKDAVKKMYDI-QAKKVNTLIRPD-GTK--KAYVRLTPDSDALDV 145 (152)
Q Consensus 91 tlvF~Vd~kAnK~qIKqAvekly~V-kV~kVNTli~~~-g~K--KAyV~L~~d~daldv 145 (152)
-+|--++..++..+|++.++. ||. +|..|..+..+. |.- =|||.+....+|...
T Consensus 58 lfVgnLp~~~te~~L~~~F~~-~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~A 115 (156)
T 3n9u_C 58 VYVGSFSWWTTDQQLIQVIRS-IGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKL 115 (156)
T ss_dssp EEEECCCTTCCHHHHHHHHHH-TTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHH-HCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHH
Confidence 344445668999999999977 675 899998876543 322 499999876655443
No 147
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.08 E-value=1.2e+02 Score=19.43 Aligned_cols=53 Identities=25% Similarity=0.306 Sum_probs=33.3
Q ss_pred eEEEE--EecCCCHHHHH----HHHHhHhCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHH
Q 031815 91 TLVFI--VDIRADKKKIK----DAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDV 145 (152)
Q Consensus 91 tlvF~--Vd~kAnK~qIK----qAvekly~VkV~kVNTli~~~g~KKAyV~L~~d~daldv 145 (152)
+-+|+ ++...+..+++ +.++. || .|..|..+..+++.--|||++....+|...
T Consensus 10 ~~l~V~nL~~~~~~~~l~~~l~~~F~~-~G-~v~~v~i~~~~~~rg~afV~f~~~~~A~~A 68 (96)
T 2dgx_A 10 ADVQVSNIDYRLSRKELQQLLQEAFAR-HG-KVKSVELSPHTDYQLKAVVQMENLQDAIGA 68 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHH-HS-CEEEEEECSCCSTTCCEEEEESSHHHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhccc-cC-cEEEEEEEeCCCCCeEEEEEECCHHHHHHH
Confidence 33444 45678999999 55554 34 466777664443322599999876665544
No 148
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.49 E-value=73 Score=21.61 Aligned_cols=53 Identities=15% Similarity=0.285 Sum_probs=36.2
Q ss_pred eEEEE--EecCCCHHHHHHHHHhHhCC-c-eeeEEEeeCCCCee--eEEEEcCCCCcHHH
Q 031815 91 TLVFI--VDIRADKKKIKDAVKKMYDI-Q-AKKVNTLIRPDGTK--KAYVRLTPDSDALD 144 (152)
Q Consensus 91 tlvF~--Vd~kAnK~qIKqAvekly~V-k-V~kVNTli~~~g~K--KAyV~L~~d~dald 144 (152)
.-+|+ ++..++..+|++.++. |+. . |..|..+...+|.- -|||.+....+|..
T Consensus 18 ~~l~V~nLp~~~te~~l~~~F~~-~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~ 76 (118)
T 2db1_A 18 YVVKLRGLPWSCSIEDVQNFLSD-CTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKL 76 (118)
T ss_dssp CEEEEESCCTTCCHHHHHHHTTT-SCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHH-cCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHH
Confidence 33454 4567999999998887 454 2 67888776665532 59999987665443
No 149
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=21.45 E-value=96 Score=20.11 Aligned_cols=36 Identities=8% Similarity=0.228 Sum_probs=30.9
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEee
Q 031815 89 NNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI 124 (152)
Q Consensus 89 ~NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli 124 (152)
..++.+.|+...+=.++|+.++...|+.+.....+.
T Consensus 21 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 56 (85)
T 2kd0_A 21 GKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIF 56 (85)
T ss_dssp TEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEE
T ss_pred CEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE
Confidence 357888999999999999999999999987777653
No 150
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=21.41 E-value=1.4e+02 Score=20.31 Aligned_cols=36 Identities=11% Similarity=0.213 Sum_probs=31.3
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhHhCCceeeEEEee
Q 031815 89 NNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI 124 (152)
Q Consensus 89 ~NtlvF~Vd~kAnK~qIKqAvekly~VkV~kVNTli 124 (152)
..++.+.|+...+=.++|+.++...++.+.....+.
T Consensus 45 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 80 (111)
T 2ojr_A 45 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 80 (111)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEE
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEE
Confidence 367889999999999999999999999988777654
No 151
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=20.89 E-value=1.7e+02 Score=20.70 Aligned_cols=45 Identities=11% Similarity=0.096 Sum_probs=31.3
Q ss_pred ecCCCHHHHHHHHHhHhCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHH
Q 031815 97 DIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDV 145 (152)
Q Consensus 97 d~kAnK~qIKqAvekly~VkV~kVNTli~~~g~KKAyV~L~~d~daldv 145 (152)
.-.++..++.+.+.+ || .|.+|....+ .|+ .|||.+....+|.+-
T Consensus 34 ~~~vt~~~L~~~Fs~-yG-~V~~v~i~~~-~Gf-~aFVef~~~~~A~~A 78 (124)
T 2e5i_A 34 LYPITVDVLYTVCNP-VG-KVQRIVIFKR-NGI-QAMVEFESVLCAQKA 78 (124)
T ss_dssp CSCCCHHHHHHHHTT-TS-CEEEEEEEES-SSE-EEEEEESSHHHHHHH
T ss_pred CCCCCHHHHHHHHHh-cC-CEEEEEEEeC-CCC-EEEEEECCHHHHHHH
Confidence 357888899988887 55 4777776544 354 599999876665543
No 152
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=20.84 E-value=1.4e+02 Score=18.86 Aligned_cols=35 Identities=14% Similarity=0.265 Sum_probs=30.4
Q ss_pred CeEEE-EEecCCCHHHHHHHHHhHhCCceeeEEEee
Q 031815 90 NTLVF-IVDIRADKKKIKDAVKKMYDIQAKKVNTLI 124 (152)
Q Consensus 90 NtlvF-~Vd~kAnK~qIKqAvekly~VkV~kVNTli 124 (152)
.++.+ .|+...+=.++|+.|+...++.+.....+.
T Consensus 19 ~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~ 54 (89)
T 1wy8_A 19 KTCTIEDVSRKATIEELRERVWALFDVRPECQRLFY 54 (89)
T ss_dssp CEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEE
T ss_pred ceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEE
Confidence 47889 599999999999999999999988777654
No 153
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=20.75 E-value=28 Score=22.84 Aligned_cols=48 Identities=13% Similarity=0.145 Sum_probs=33.3
Q ss_pred EEecCCCHHHHHHHHHhHhCCceeeEEEeeCC--CC--eeeEEEEcCCCCcHHHH
Q 031815 95 IVDIRADKKKIKDAVKKMYDIQAKKVNTLIRP--DG--TKKAYVRLTPDSDALDV 145 (152)
Q Consensus 95 ~Vd~kAnK~qIKqAvekly~VkV~kVNTli~~--~g--~KKAyV~L~~d~daldv 145 (152)
-++..++..+|++.++. || |..|..+..+ .| .--|||.+....+|...
T Consensus 26 nLp~~~t~~~l~~~F~~-~G--i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A 77 (100)
T 2j76_E 26 NLPYDVTEESIKEFFRG-LN--ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSA 77 (100)
T ss_dssp CCSSCCSSSHHHHHSCS-SC--EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHh-cC--CeEEEEEecCCcCCccCeEEEEEECCHHHHHHH
Confidence 34567899999998887 57 8888876554 11 12599999876665443
No 154
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=20.52 E-value=2.7e+02 Score=20.72 Aligned_cols=62 Identities=13% Similarity=0.228 Sum_probs=38.6
Q ss_pred hhhhcCCeEEEEEe----cCCCHHHHHHHHHhHhCCcee--eEEEeeCC-C-CeeeEEEEcCCCCcHHHHHHhh
Q 031815 84 KKIEDNNTLVFIVD----IRADKKKIKDAVKKMYDIQAK--KVNTLIRP-D-GTKKAYVRLTPDSDALDVANKI 149 (152)
Q Consensus 84 k~~E~~NtlvF~Vd----~kAnK~qIKqAvekly~VkV~--kVNTli~~-~-g~KKAyV~L~~d~daldvanki 149 (152)
.++.. ..++|.|. ...+|.||++.+-++|+++.. -|--+... | |.=..|..+ ||.+|.|.++
T Consensus 16 ~LL~R-ke~v~dV~HpG~aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I---Yds~d~akk~ 85 (135)
T 3u5c_Y 16 PLLAR-KQFVVDVLHPNRANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV---YNSVAEAKKF 85 (135)
T ss_dssp GGGTE-EEEEEEEECSSSCCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE---ESSHHHHHHH
T ss_pred cCcCc-EEEEEEEEeCCCCCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE---eCCHHHHHhc
Confidence 34443 46777774 346799999999999998643 33333322 3 333444444 5778887764
No 155
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=20.48 E-value=1.1e+02 Score=20.10 Aligned_cols=55 Identities=9% Similarity=0.136 Sum_probs=35.7
Q ss_pred eEEEE--EecCCCHHHHHHHHHhHhCCceeeEEEeeCCC-C--eeeEEEEcCCCCcHHHHHH
Q 031815 91 TLVFI--VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-G--TKKAYVRLTPDSDALDVAN 147 (152)
Q Consensus 91 tlvF~--Vd~kAnK~qIKqAvekly~VkV~kVNTli~~~-g--~KKAyV~L~~d~daldvan 147 (152)
+-+|+ ++...+..+|++.+++ || .|..|..+..+. | .--|||.+....+|.....
T Consensus 41 ~~l~V~nlp~~~t~~~l~~~F~~-~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 100 (118)
T 2khc_A 41 CNLFIYHLPQEFTDTDLASTFLP-FG-NVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIK 100 (118)
T ss_dssp EEEEEECSCTTCCHHHHHHHTTT-SC-EEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cC-CEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 34444 4567899999998876 45 466666654332 1 2259999987777655544
Done!