RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 031815
         (152 letters)



>d1vqos1 d.12.1.1 (S:1-81) Ribosomal protein L23 {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 81

 Score =  102 bits (256), Expect = 4e-30
 Identities = 36/80 (45%), Positives = 53/80 (66%)

Query: 70  YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGT 129
           + ++K+P  TE AM  ++  N L F VD RA K ++ DAV++ YD+  ++VNT    DG 
Sbjct: 2   WDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGE 61

Query: 130 KKAYVRLTPDSDALDVANKI 149
           KKA VRL+ D DA +VA++I
Sbjct: 62  KKAVVRLSEDDDAQEVASRI 81


>d2qamt1 d.12.1.1 (T:1-93) Ribosomal protein L23 {Escherichia coli
           [TaxId: 562]}
          Length = 93

 Score = 74.0 bits (182), Expect = 7e-19
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 13/90 (14%)

Query: 65  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI 124
            +    ++L+ P  +E A   +E +NT+V  V   A K +IK AV+K+++++ + VNTL+
Sbjct: 3   REERLLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLV 62

Query: 125 RP-------------DGTKKAYVRLTPDSD 141
                             KKAYV L    +
Sbjct: 63  VKGKVKRHGQRIGRRSDWKKAYVTLKEGQN 92


>d2j01x1 d.12.1.1 (X:3-95) Ribosomal protein L23 {Thermus
           thermophilus [TaxId: 274]}
          Length = 93

 Score = 65.1 bits (159), Expect = 2e-15
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 14/85 (16%)

Query: 70  YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRP--- 126
           Y ++  P+ +E A           F V  +A K +IK+AV+  + ++  KVNTL      
Sbjct: 3   YDVILAPVLSEKAYAGFA-EGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKK 61

Query: 127 ----------DGTKKAYVRLTPDSD 141
                        KKA V++ P   
Sbjct: 62  KRLGRYLGKRPDRKKAIVQVAPGQK 86


>d2zjrq1 d.12.1.1 (Q:2-94) Ribosomal protein L23 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 93

 Score = 64.7 bits (158), Expect = 2e-15
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 14/86 (16%)

Query: 69  HYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRP-- 126
           HY IL+ P+ +E A   +E      F V  +A K +IKDA+++ + ++   ++T+  P  
Sbjct: 2   HYDILQAPVISEKAYSAME-RGVYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGK 60

Query: 127 -----------DGTKKAYVRLTPDSD 141
                      +  KKA VRL     
Sbjct: 61  RKRVGRFIGQRNDRKKAIVRLAEGQS 86


>d2fiqa1 c.1.10.7 (A:1-420) Putative tagatose 6-phosphate kinase 1
           GatZ {Escherichia coli [TaxId: 562]}
          Length = 420

 Score = 29.8 bits (67), Expect = 0.13
 Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 32  KAKKIRTSVTFHRPKTLKKDRNPKYPRISA---PPRNKLDHYQILKYPLTTESAMKKIED 88
             +    ++  H+   + +       R+ A    P  + DH  I+ Y      A+ +  +
Sbjct: 189 HVEDAANTLRTHQKAFIARGLTEALTRVIAIVVQPGVEFDHSNIIHYQPQEAQALAQWIE 248

Query: 89  NNTLVF 94
           N  +V+
Sbjct: 249 NTRMVY 254


>d1u3da1 a.99.1.1 (A:198-497) Cryptochrome C-terminal domain {Thale
           cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 300

 Score = 28.0 bits (61), Expect = 0.52
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 3/78 (3%)

Query: 43  HRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKK---IEDNNTLVFIVDIR 99
            + +  K D N +Y R   P  ++L    I       ES ++       +N  + IV + 
Sbjct: 222 PQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLD 281

Query: 100 ADKKKIKDAVKKMYDIQA 117
             K ++ +A+ +M+ ++A
Sbjct: 282 EAKARLHEALSQMWQLEA 299


>d1f06a2 d.81.1.3 (A:119-268) Diaminopimelic acid dehydrogenase
           (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}
          Length = 150

 Score = 24.0 bits (52), Expect = 6.5
 Identities = 6/20 (30%), Positives = 13/20 (65%)

Query: 93  VFIVDIRADKKKIKDAVKKM 112
            F+V   AD ++I++ ++ M
Sbjct: 79  CFVVADAADHERIENDIRTM 98


>d1w27a_ a.127.1.2 (A:) Phenylalanine ammonia-lyase, PAL {Parsley
           (Petroselinum crispum), PAL1 [TaxId: 4043]}
          Length = 692

 Score = 24.5 bits (53), Expect = 6.6
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 96  VDIRADKKKIKDAVKKMYDIQAKKVNTL 123
           +D+R  ++ +K  VK      AK+V T+
Sbjct: 499 IDLRHLEENLKSTVKNTVSSVAKRVLTM 526


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.131    0.362 

Gapped
Lambda     K      H
   0.267   0.0578    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 544,247
Number of extensions: 24281
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 18
Length of query: 152
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 74
Effective length of database: 1,336,656
Effective search space: 98912544
Effective search space used: 98912544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.0 bits)