BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031818
(152 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ILV|A Chain A, Crystal Structure Of A Glutamine-Dependent Nad(+)
Synthetase From Cytophaga Hutchinsonii
Length = 634
Score = 32.7 bits (73), Expect = 0.083, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 3 QLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYS 62
Q DE D+ Y+ L+ R PV ++ L T +E VK FF+ +S
Sbjct: 526 QTDERDL-XPYDVLARIERKAIKERLSPVQVYTALLTE--GPYTKNEFKYWVKKFFRLWS 582
Query: 63 INRHKMTVLTPSYHAESYS 81
IN+ K L PS+H + ++
Sbjct: 583 INQWKRERLAPSFHXDDFN 601
>pdb|2PZ8|A Chain A, Nad+ Synthetase From Bacillus Anthracis With Amp-Cpp And
Mg2+
pdb|2PZ8|B Chain B, Nad+ Synthetase From Bacillus Anthracis With Amp-Cpp And
Mg2+
pdb|2PZA|A Chain A, Nad+ Synthetase From Bacillus Anthracis With Amp + Ppi And
Mg2+
pdb|2PZA|B Chain B, Nad+ Synthetase From Bacillus Anthracis With Amp + Ppi And
Mg2+
pdb|2PZB|A Chain A, Nad+ Synthetase From Bacillus Anthracis
pdb|2PZB|B Chain B, Nad+ Synthetase From Bacillus Anthracis
pdb|2PZB|C Chain C, Nad+ Synthetase From Bacillus Anthracis
pdb|2PZB|D Chain D, Nad+ Synthetase From Bacillus Anthracis
Length = 284
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 24/68 (35%)
Query: 3 QLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYS 62
Q DE ++G+TY++L Y + P++VAEK++ K Y+
Sbjct: 219 QADETELGITYDQLDDY---------------------LEGKTVPADVAEKIE---KRYT 254
Query: 63 INRHKMTV 70
++ HK V
Sbjct: 255 VSEHKRQV 262
>pdb|2UUR|A Chain A, N-Terminal Nc4 Domain Of Collagen Ix
Length = 245
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 25 IFHCGPVSMFKNLCYRWGARLTPSEVAEK 53
+ HC P+ + C+ AR+TPS+ ++
Sbjct: 216 LIHCDPLRPRRETCHELPARITPSQTTDE 244
>pdb|3I7F|A Chain A, Aspartyl Trna Synthetase From Entamoeba Histolytica
pdb|3I7F|B Chain B, Aspartyl Trna Synthetase From Entamoeba Histolytica
Length = 548
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 13 YEELSVYGRLRKIFHCGPV 31
Y+++++ G RK+F GPV
Sbjct: 301 YKQMAIMGDFRKVFEVGPV 319
>pdb|2P4E|P Chain P, Crystal Structure Of Pcsk9
pdb|2P4E|A Chain A, Crystal Structure Of Pcsk9
Length = 692
Score = 25.8 bits (55), Expect = 9.3, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 70 VLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEKVP 118
+ P Y A+ Y P D + +L + R+I+ V D E VP
Sbjct: 161 ITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREIEGRVMVTDFENVP 209
>pdb|3P5B|A Chain A, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
pdb|3P5C|A Chain A, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 540
Score = 25.8 bits (55), Expect = 9.3, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 70 VLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEKVP 118
+ P Y A+ Y P D + +L + R+I+ V D E VP
Sbjct: 9 ITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREIEGRVMVTDFENVP 57
>pdb|3M0C|B Chain B, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 546
Score = 25.8 bits (55), Expect = 9.3, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 70 VLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEKVP 118
+ P Y A+ Y P D + +L + R+I+ V D E VP
Sbjct: 9 ITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREIEGRVMVTDFENVP 57
>pdb|3H42|B Chain B, Crystal Structure Of Pcsk9 In Complex With Fab From Ldlr
Competitive Antibody
Length = 540
Score = 25.8 bits (55), Expect = 9.3, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 70 VLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEKVP 118
+ P Y A+ Y P D + +L + R+I+ V D E VP
Sbjct: 9 ITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREIEGRVMVTDFENVP 57
>pdb|3BPS|A Chain A, Pcsk9:egf-a Complex
pdb|3GCW|A Chain A, Pcsk9:egfa(H306y)
pdb|3GCX|A Chain A, Pcsk9:egfa (Ph 7.4)
pdb|3SQO|A Chain A, Pcsk9 J16 Fab Complex
Length = 540
Score = 25.8 bits (55), Expect = 9.3, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 70 VLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEKVP 118
+ P Y A+ Y P D + +L + R+I+ V D E VP
Sbjct: 9 ITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREIEGRVMVTDFENVP 57
>pdb|2QTW|B Chain B, The Crystal Structure Of Pcsk9 At 1.9 Angstroms Resolution
Reveals Structural Homology To Resistin Within The
C-Terminal Domain
Length = 546
Score = 25.8 bits (55), Expect = 9.3, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 70 VLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEKVP 118
+ P Y A+ Y P D + +L + R+I+ V D E VP
Sbjct: 9 ITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREIEGRVMVTDFENVP 57
>pdb|2PMW|B Chain B, The Crystal Structure Of Proprotein Convertase Subtilisin
Kexin Type 9 (Pcsk9)
Length = 540
Score = 25.8 bits (55), Expect = 9.3, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 70 VLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEKVP 118
+ P Y A+ Y P D + +L + R+I+ V D E VP
Sbjct: 9 ITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREIEGRVMVTDFENVP 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,216,914
Number of Sequences: 62578
Number of extensions: 156484
Number of successful extensions: 337
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 322
Number of HSP's gapped (non-prelim): 18
length of query: 152
length of database: 14,973,337
effective HSP length: 90
effective length of query: 62
effective length of database: 9,341,317
effective search space: 579161654
effective search space used: 579161654
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)