Query 031818
Match_columns 152
No_of_seqs 166 out of 232
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 05:46:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031818.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031818hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2303 Predicted NAD synthase 100.0 4.8E-60 1E-64 430.3 10.5 119 1-119 583-701 (706)
2 PLN02339 NAD+ synthase (glutam 100.0 3.7E-47 8E-52 351.4 11.8 115 2-116 583-697 (700)
3 PRK02628 nadE NAD synthetase; 99.6 1.1E-15 2.5E-20 141.2 3.0 82 1-104 556-637 (679)
4 PRK13980 NAD synthetase; Provi 99.1 2E-10 4.3E-15 95.1 6.8 67 2-79 195-261 (265)
5 PRK13981 NAD synthetase; Provi 98.8 1.6E-08 3.5E-13 90.8 8.3 81 2-100 457-537 (540)
6 cd00553 NAD_synthase NAD+ synt 98.7 1.2E-08 2.6E-13 83.4 4.3 56 2-68 193-248 (248)
7 PF02540 NAD_synthase: NAD syn 98.6 7.2E-08 1.6E-12 79.9 4.8 58 2-70 184-241 (242)
8 TIGR00552 nadE NAD+ synthetase 98.5 1.3E-07 2.7E-12 77.6 5.0 53 2-75 191-243 (250)
9 COG0171 NadE NAD synthase [Coe 98.5 1.6E-07 3.4E-12 80.1 5.0 57 2-78 203-259 (268)
10 PRK00768 nadE NAD synthetase; 98.2 2.5E-06 5.4E-11 72.8 4.7 46 2-71 218-263 (268)
11 PRK00876 nadE NAD synthetase; 97.9 2.5E-05 5.5E-10 68.1 6.9 62 2-70 253-315 (326)
12 PTZ00323 NAD+ synthase; Provis 97.6 6.8E-05 1.5E-09 64.6 4.7 65 2-70 226-290 (294)
13 PRK02628 nadE NAD synthetase; 97.5 0.0002 4.4E-09 67.1 5.9 59 26-84 580-654 (679)
14 PF04504 DUF573: Protein of un 74.7 9.3 0.0002 28.1 5.2 54 14-67 14-71 (98)
15 cd08777 Death_RIP1 Death Domai 68.2 10 0.00022 27.2 4.1 34 8-43 22-55 (86)
16 PF13208 TerB-N: TerB-N 47.5 45 0.00098 27.1 5.0 52 8-62 78-129 (211)
17 PF14769 CLAMP: Flagellar C1a 46.3 69 0.0015 23.1 5.3 16 7-22 8-23 (101)
18 PF08111 Pea-VEAacid: Pea-VEAa 40.7 12 0.00026 19.6 0.4 12 70-81 2-13 (15)
19 PF06526 DUF1107: Protein of u 38.7 20 0.00042 25.3 1.4 15 44-58 6-20 (64)
20 cd08804 Death_ank2 Death domai 37.8 50 0.0011 23.4 3.4 14 8-21 24-37 (84)
21 PRK14600 ruvA Holliday junctio 37.6 81 0.0018 25.7 5.0 28 11-38 64-91 (186)
22 cd08311 Death_p75NR Death doma 37.5 47 0.001 23.5 3.2 28 8-43 24-51 (77)
23 cd08803 Death_ank3 Death domai 36.2 68 0.0015 23.0 3.9 33 8-43 24-56 (84)
24 COG4703 Uncharacterized protei 34.6 16 0.00036 26.5 0.5 33 78-112 37-69 (74)
25 PRK14604 ruvA Holliday junctio 33.9 1.1E+02 0.0023 25.2 5.2 28 11-38 64-91 (195)
26 PRK14606 ruvA Holliday junctio 33.5 1.1E+02 0.0023 25.0 5.1 28 11-38 64-91 (188)
27 PRK13901 ruvA Holliday junctio 32.7 1.1E+02 0.0024 25.4 5.2 27 12-38 64-90 (196)
28 PRK14601 ruvA Holliday junctio 32.1 1.2E+02 0.0025 24.8 5.1 27 12-38 65-91 (183)
29 PRK14603 ruvA Holliday junctio 30.6 1.2E+02 0.0027 24.7 5.1 27 12-38 64-90 (197)
30 KOG2459 GPI transamidase compl 28.1 1.1E+02 0.0024 29.5 4.9 54 5-58 397-454 (536)
31 TIGR01319 glmL_fam conserved h 26.1 1.1E+02 0.0023 28.9 4.4 72 3-74 288-376 (463)
32 TIGR00084 ruvA Holliday juncti 26.0 1.7E+02 0.0038 23.7 5.1 40 11-55 63-102 (191)
33 PRK14602 ruvA Holliday junctio 25.4 1.5E+02 0.0033 24.3 4.8 28 12-39 66-93 (203)
34 TIGR03471 HpnJ hopanoid biosyn 25.3 3.4E+02 0.0074 24.3 7.3 55 10-67 415-472 (472)
35 PF04928 PAP_central: Poly(A) 23.6 81 0.0017 26.9 2.9 63 49-111 153-232 (254)
36 PF03668 ATP_bind_2: P-loop AT 23.5 84 0.0018 27.7 3.0 47 44-98 140-193 (284)
37 PF13333 rve_2: Integrase core 22.8 1.2E+02 0.0026 19.2 3.0 27 45-73 18-44 (52)
38 PF00531 Death: Death domain; 22.0 2.1E+02 0.0045 18.7 4.2 31 8-42 21-51 (83)
39 cd08793 Death_IRAK4 Death doma 21.4 3.7E+02 0.008 20.4 6.2 40 8-51 37-77 (100)
40 PHA02099 hypothetical protein 21.1 32 0.00069 25.3 -0.0 11 73-83 46-56 (84)
41 PF13941 MutL: MutL protein 20.9 1E+02 0.0022 28.8 3.2 18 4-21 286-303 (457)
42 COG3492 Uncharacterized protei 20.8 95 0.0021 23.8 2.5 15 4-18 68-82 (104)
43 PF06057 VirJ: Bacterial virul 20.7 1.1E+02 0.0025 25.4 3.1 77 7-96 10-88 (192)
44 PF03861 ANTAR: ANTAR domain; 20.2 2.5E+02 0.0054 18.1 4.2 36 19-54 19-55 (56)
No 1
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=100.00 E-value=4.8e-60 Score=430.27 Aligned_cols=119 Identities=68% Similarity=1.173 Sum_probs=115.2
Q ss_pred CCCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhcccccccCCCccccccC
Q 031818 1 MKQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESY 80 (152)
Q Consensus 1 ~~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~ltPSfH~e~Y 80 (152)
.+||||+||||||+||++||||||+.||||||||++|++.|+++++|+||++|||+||.+|++||||||+||||||||+|
T Consensus 583 ~~QtDE~dmGmTY~ELsv~GrlRK~~~cGPysMF~kLl~~W~~klsp~qvaEKVk~FF~~Y~iNRHKmTvlTPsyHAE~Y 662 (706)
T KOG2303|consen 583 YSQTDEADMGMTYAELSVFGRLRKVSKCGPYSMFCKLLHQWGDKLSPRQVAEKVKRFFSYYSINRHKMTVLTPSYHAENY 662 (706)
T ss_pred ccccchhhhCccHHHHHHhHhhccccccCcHHHHHHHHHHhcCcCCHHHHHHHHHHHHhhheeccccceecccccccccC
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccccCCCCchhhhHHHHHHHHhhcCCCCC
Q 031818 81 SPEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEKVPF 119 (152)
Q Consensus 81 spDdnrfDlRpfly~~~~~~qf~~id~~~~~~~~~~~~~ 119 (152)
|||||||||||||||++|||||+|||++|+++|....++
T Consensus 663 speDnRfDlRpFLynp~w~wqfkkIde~v~~~e~~~~~~ 701 (706)
T KOG2303|consen 663 SPEDNRFDLRPFLYNPSWPWQFKKIDEQVEQLEANSTKS 701 (706)
T ss_pred CCccccccccccccCCCCchHHHHHHHHHHHhhhccCcc
Confidence 999999999999999999999999999999999866553
No 2
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=100.00 E-value=3.7e-47 Score=351.42 Aligned_cols=115 Identities=85% Similarity=1.420 Sum_probs=112.2
Q ss_pred CCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhcccccccCCCccccccCC
Q 031818 2 KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYS 81 (152)
Q Consensus 2 ~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~ltPSfH~e~Ys 81 (152)
.||||+||||||++|+.|++||+..+|||++||.+|++.|++.+++++|+.||++||++|++|||||+++|||||+|+||
T Consensus 583 ~Q~dE~~lG~~Y~~l~~~~~l~~~~~~~p~~i~~~~~~~~~~~y~~~~i~~~~~~F~~~f~~nq~Kr~~~~p~~~~~~~s 662 (700)
T PLN02339 583 SQTDEEDMGMTYEELGVYGRLRKIFRCGPVSMFKNLCHEWNGRLSPSEVAAKVKDFFKYYSINRHKMTTLTPSYHAESYS 662 (700)
T ss_pred CCCCHHHHCcCHHHHHHHHHHHhccCCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhhccccccCCccccCCCC
Confidence 59999999999999999999999999999999999999998789999999999999999999999999999999999999
Q ss_pred CCCCCCcccccccCCCCchhhhHHHHHHHHhhcCC
Q 031818 82 PEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEK 116 (152)
Q Consensus 82 pDdnrfDlRpfly~~~~~~qf~~id~~~~~~~~~~ 116 (152)
||||||||||||||++|||||++||++|+++|...
T Consensus 663 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (700)
T PLN02339 663 PDDNRFDLRQFLYNTRWPYQFRKIDELVEELDGET 697 (700)
T ss_pred CCCCcccccccccCCCCchhHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999643
No 3
>PRK02628 nadE NAD synthetase; Reviewed
Probab=99.56 E-value=1.1e-15 Score=141.24 Aligned_cols=82 Identities=23% Similarity=0.221 Sum_probs=72.0
Q ss_pred CCCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhcccccccCCCccccccC
Q 031818 1 MKQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESY 80 (152)
Q Consensus 1 ~~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~ltPSfH~e~Y 80 (152)
|.|+||.+|| ||++||.|.. ..|..+++|++|+.+++++|+.| |||||++ ||+||++.|
T Consensus 556 ~~q~ded~lg-pY~~~D~~l~-----------------~~~~~~~~~~~i~~~~~~~f~~~--~~~~~~~-~~~~~~~~~ 614 (679)
T PRK02628 556 IVQSTEDIIG-PYELQDFFLY-----------------YFLRYGFRPSKIAFLAWHAWKDA--ERGAWPG-FPEDKRPAY 614 (679)
T ss_pred CCCcchhccC-CHHHHHHHHH-----------------HHHhcCCCHHHHHHHHHHHhhcc--ccccCCC-CcchhcccC
Confidence 4699999998 9999998877 33345688899999999999888 9999999 999999999
Q ss_pred CCCCCCCcccccccCCCCchhhhH
Q 031818 81 SPEDNRFDLRQFLYNARWPYQFRK 104 (152)
Q Consensus 81 spDdnrfDlRpfly~~~~~~qf~~ 104 (152)
++++++..+|+|++ ..|.+|||+
T Consensus 615 ~~~~v~~~~~~f~~-~~~~~qfKR 637 (679)
T PRK02628 615 DLATIKKWLEVFLR-RFFSSQFKR 637 (679)
T ss_pred CHHHHHHHHHHHcc-hhchHhhCc
Confidence 99999999999999 557999986
No 4
>PRK13980 NAD synthetase; Provisional
Probab=99.09 E-value=2e-10 Score=95.11 Aligned_cols=67 Identities=19% Similarity=0.221 Sum_probs=54.1
Q ss_pred CCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhcccccccCCCcccccc
Q 031818 2 KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAES 79 (152)
Q Consensus 2 ~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~ltPSfH~e~ 79 (152)
.||||.||||||++||.|.......+++|-.|...+ +.++ +.|+++++++.+|+|||. +||.+|+.+
T Consensus 195 ~q~De~~lg~~Y~~lD~~l~~~~~~~~~~~~i~~~~------~~~~----~~~~~i~~~~~~~~~Kr~-~p~~~~~~~ 261 (265)
T PRK13980 195 GQTDEGELGFSYETIDEILYLLFDKKMSREEILEEL------GVPE----DLVDRVRRLVQRSQHKRR-LPPIPKLSG 261 (265)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHHHcCCCHHHHHHHh------CCCH----HHHHHHHHHHHHhhhccc-CCCCcCCCc
Confidence 499999999999999999987777888888888654 1232 366667777799999998 899998743
No 5
>PRK13981 NAD synthetase; Provisional
Probab=98.80 E-value=1.6e-08 Score=90.84 Aligned_cols=81 Identities=12% Similarity=0.055 Sum_probs=64.5
Q ss_pred CCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhcccccccCCCccccccCC
Q 031818 2 KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYS 81 (152)
Q Consensus 2 ~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~ltPSfH~e~Ys 81 (152)
.||||.||| ||++||.+.......+.+|-++.. . +++++ .|+++.+++.+|||||..+||..|+.+.+
T Consensus 457 ~q~de~~l~-~Y~~lD~~l~~~~~~~~~~~~~~~-----~--~~~~~----~~~~~~~~~~~~~~KR~~~pp~~~~~~~~ 524 (540)
T PRK13981 457 NQTDQDSLP-PYDVLDAILERLVEEEQSVAEIVA-----A--GFDRA----TVRRVERLLYIAEYKRRQAAPGVKITRRA 524 (540)
T ss_pred CCcCccccC-CHHHHHHHHHHHHHcCCCHHHHHH-----c--CCCHH----HHHHHHHHHHhchhccccCCCcceecCCC
Confidence 499999998 999999999988888999999964 1 35554 34555566689999999889999999988
Q ss_pred CCCCCCcccccccCCCCch
Q 031818 82 PEDNRFDLRQFLYNARWPY 100 (152)
Q Consensus 82 pDdnrfDlRpfly~~~~~~ 100 (152)
++ +-|.||..+.|
T Consensus 525 ~~------~~~r~p~~~~~ 537 (540)
T PRK13981 525 FG------RDRRYPITNRF 537 (540)
T ss_pred CC------CCccCccccCc
Confidence 76 34567776654
No 6
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=98.72 E-value=1.2e-08 Score=83.38 Aligned_cols=56 Identities=39% Similarity=0.580 Sum_probs=45.4
Q ss_pred CCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhccccc
Q 031818 2 KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKM 68 (152)
Q Consensus 2 ~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKr 68 (152)
.|+||.||||||++||.|.+.....+++|..+. ......+.|+++++++.+|+|||
T Consensus 193 ~q~de~~lg~~Y~~lD~~l~~~~~~~~~~~~~~-----------~~~~~~~~~~~i~~~~~~~~~KR 248 (248)
T cd00553 193 GQTDEDELGMPYEELDQFLYLRLEGGLGPEEIL-----------APGIIEEVVKRVFRLYKKNEHKR 248 (248)
T ss_pred CCCCHHHhCCCHHHHHHHHHHHHhcCCCHhhhh-----------ccCCCHHHHHHHHHHHHhccccc
Confidence 499999999999999999999999999995443 11233457777778889999998
No 7
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=98.57 E-value=7.2e-08 Score=79.92 Aligned_cols=58 Identities=26% Similarity=0.300 Sum_probs=43.4
Q ss_pred CCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhccccccc
Q 031818 2 KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTV 70 (152)
Q Consensus 2 ~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~ 70 (152)
.||||.|||+||++||.|.+ ....+.+|.++... .+. +.++.++| .+++.+|+|||..
T Consensus 184 gqtDE~elg~~Y~~lD~~l~-~~~~~~~~~~~~~~------~~~-~~~~~~~i---~~~~~~~~hKr~~ 241 (242)
T PF02540_consen 184 GQTDEDELGFSYEELDAILR-LIEEGLSPEEIAEK------LGV-DPEVVERI---ERLHKRSEHKRRQ 241 (242)
T ss_dssp T-BHHHHHTSTHHHHHHHHH-HHTSSTTHHHHHHT------CTS--HHHHHHH---HHHHHHTGGGGSS
T ss_pred CCCCHHHhCCCHHHHHHHHH-HHHcCCCHHHHHHh------cCC-CHHHHHHH---HHHHHhhhhccCC
Confidence 49999999999999999999 77888999888743 122 33444455 5555999999985
No 8
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=98.52 E-value=1.3e-07 Score=77.61 Aligned_cols=53 Identities=26% Similarity=0.416 Sum_probs=39.1
Q ss_pred CCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhcccccccCCCcc
Q 031818 2 KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSY 75 (152)
Q Consensus 2 ~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~ltPSf 75 (152)
-||||.||||||++||.|.++.... +.++.++.++|++. +.+|+|||.. ||++
T Consensus 191 ~q~de~~~g~~y~~~D~~l~~~~~~-----------------~~~~~~~~~~i~~~---~~~~~~kr~~-~~~~ 243 (250)
T TIGR00552 191 GQTDETELGITYDELDDYLKGIEEL-----------------SQTVQEVVKRIESL---VQKSEHKRRL-PATI 243 (250)
T ss_pred CCcCHHHhCcCHHHHHHHHHHHhhc-----------------CCCHHHHHHHHHHH---HHHHHhcccC-CCCc
Confidence 3999999999999999998854432 23445555556554 4999999975 6765
No 9
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=98.49 E-value=1.6e-07 Score=80.14 Aligned_cols=57 Identities=26% Similarity=0.310 Sum_probs=41.9
Q ss_pred CCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhcccccccCCCccccc
Q 031818 2 KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAE 78 (152)
Q Consensus 2 ~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~ltPSfH~e 78 (152)
.|+||.+|||||++||.|...+... . .--+.++..+|++++ .+|+|||. +||..+..
T Consensus 203 ~q~DE~~lg~~Y~~lD~~L~~~~~~---------------~-~~i~~~~~~~i~~~~---~~~~~KR~-~p~~~~~~ 259 (268)
T COG0171 203 GQTDEAELGMPYEELDDILYGLLEN---------------G-QEISEELVKKIERLY---KKSEHKRR-LPIGPKIT 259 (268)
T ss_pred CCCCHHHhCCCHHHHHHHHHHhhhh---------------h-cccCHHHHHHHHHHH---HHHHhhhc-CCCCcCcc
Confidence 4999999999999999998844333 1 123455556666655 99999999 67776654
No 10
>PRK00768 nadE NAD synthetase; Reviewed
Probab=98.15 E-value=2.5e-06 Score=72.83 Aligned_cols=46 Identities=26% Similarity=0.438 Sum_probs=35.7
Q ss_pred CCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhcccccccC
Q 031818 2 KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVL 71 (152)
Q Consensus 2 ~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~l 71 (152)
.||||.|||+||++||.|... .-...++.++|++.+ .+|+|||...
T Consensus 218 gq~DE~~lg~~Y~~lD~~L~~---------------------~~~~~~~~~~i~~~~---~~~~~Kr~~p 263 (268)
T PRK00768 218 GLPDEVALGVTYDQIDDYLEG---------------------KPVSEEAAETIENWY---LKTEHKRHLP 263 (268)
T ss_pred CCCChhhcCCCHHHHHHHHhc---------------------CCCCHHHHHHHHHHH---HHHHHcccCC
Confidence 499999999999999998851 112455667777666 8999999863
No 11
>PRK00876 nadE NAD synthetase; Reviewed
Probab=97.94 E-value=2.5e-05 Score=68.14 Aligned_cols=62 Identities=15% Similarity=0.081 Sum_probs=47.1
Q ss_pred CCCcccC-cCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhccccccc
Q 031818 2 KQLDEVD-MGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTV 70 (152)
Q Consensus 2 ~QTDE~D-MGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~ 70 (152)
-|+||+| |||||++||.+.+. ...+++|-++...+ +.+++.|..-.+..-+...+|+|||..
T Consensus 253 ~q~de~~~~g~~Y~~lD~~L~~-~~~~~~~~~~~~~~------g~~~~~v~~v~~~~~~~~~~~~~k~~~ 315 (326)
T PRK00876 253 PQTQEEFYFALPYDRMDLCLYA-LNHGVPAEEVAAAL------GLTPEQVERVYRDIEAKRRTTRYLHAP 315 (326)
T ss_pred CCChhhhhcCCCHHHHHHHHHH-hhcCCCHHHHHHhc------CCCHHHHHHHHHHHHHHHhhhhhccCC
Confidence 4999999 89999999998874 46778888877542 356665554455556677999999976
No 12
>PTZ00323 NAD+ synthase; Provisional
Probab=97.64 E-value=6.8e-05 Score=64.57 Aligned_cols=65 Identities=17% Similarity=0.139 Sum_probs=41.7
Q ss_pred CCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhccccccc
Q 031818 2 KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTV 70 (152)
Q Consensus 2 ~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~ 70 (152)
.||||.||||||++|+.|.++.....-.-..+| ++.|. ..+..|..+..+..-.-..||-||-.-
T Consensus 226 ~qtDE~elg~~Y~~lD~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (294)
T PTZ00323 226 GQTDEDELGFPYDFVELYTEWYLKLNETEKKSF---LSSLS-EEARKQFEEYSAACELVHRRNAHKLQG 290 (294)
T ss_pred CCcCHhhcCCCHHHHHHHHHHHHHhhHHHHHHH---HHhcC-HHHHHHHHHHHHHHHHHHhcccccccC
Confidence 499999999999999999997666544333333 24443 223334444444444444899999753
No 13
>PRK02628 nadE NAD synthetase; Reviewed
Probab=97.47 E-value=0.0002 Score=67.10 Aligned_cols=59 Identities=12% Similarity=0.135 Sum_probs=54.6
Q ss_pred hccChHHHHHHHHHHhCC---------------CCChHHHHHHHHHHHHHhhhcccccccCCCcccccc-CCCCC
Q 031818 26 FHCGPVSMFKNLCYRWGA---------------RLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAES-YSPED 84 (152)
Q Consensus 26 ~k~GP~smf~~L~~~w~~---------------~~sp~eia~kVkrFF~~ys~NrHKrt~ltPSfH~e~-YspDd 84 (152)
.++||..++.++++.|++ ++++++|..+++.||+++.+||+||..+||++|+.+ .|++-
T Consensus 580 ~~~~~~~i~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~f~~~~~~~qfKR~~~p~g~kv~~~~~ls~ 654 (679)
T PRK02628 580 YGFRPSKIAFLAWHAWKDAERGAWPGFPEDKRPAYDLATIKKWLEVFLRRFFSSQFKRSALPNGPKVGSGGSLSP 654 (679)
T ss_pred cCCCHHHHHHHHHHHhhccccccCCCCcchhcccCCHHHHHHHHHHHcchhchHhhCcccCCCCCeeCCCCCCCC
Confidence 689999999999998875 699999999999999999999999999999999999 88654
No 14
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=74.69 E-value=9.3 Score=28.05 Aligned_cols=54 Identities=13% Similarity=0.102 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhhccChH----HHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhcccc
Q 031818 14 EELSVYGRLRKIFHCGPV----SMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHK 67 (152)
Q Consensus 14 ~ELd~~grLrk~~k~GP~----smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHK 67 (152)
..|..+.--+...+.+|. ..|..+...-....+..||.+||+++=+-|..+.-|
T Consensus 14 ~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky~~~~~k 71 (98)
T PF04504_consen 14 VILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKYRNAVKK 71 (98)
T ss_pred HHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 346666666666676664 356666665555689999999999999999888877
No 15
>cd08777 Death_RIP1 Death Domain of Receptor-Interacting Protein 1. Death domain (DD) found in Receptor-Interacting Protein 1 (RIP1) and related proteins. RIP kinases serve as essential sensors of cellular stress. Vertebrates contain several types containing a homologous N-terminal kinase domain and varying C-terminal domains. RIP1 harbors a C-terminal DD, which binds death receptors (DRs) including TNF receptor 1, Fas, TNF-related apoptosis-inducing ligand receptor 1 (TRAILR1), and TRAILR2. It also interacts with other DD-containing adaptor proteins such as TRADD and FADD. RIP1 plays a crucial role in determining a cell's fate, between survival or death, following exposure to stress signals. It is important in the signaling of NF-kappaB and MAPKs, and it links DR-associated signaling to reactive oxygen species (ROS) production. Abnormal RIP1 function may result in ROS accumulation affecting inflammatory responses, innate immunity, stress responses, and cell survival. In general, DDs ar
Probab=68.17 E-value=10 Score=27.24 Aligned_cols=34 Identities=15% Similarity=0.261 Sum_probs=28.8
Q ss_pred CcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCC
Q 031818 8 DMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGA 43 (152)
Q Consensus 8 DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~ 43 (152)
.||+|+.+|+.|.. .....||.+.-..++..|..
T Consensus 22 ~LG~s~~eI~~ie~--~~~r~~~~eq~~~mL~~W~~ 55 (86)
T cd08777 22 KLGFTESEIEEIDH--DYERDGLKEKVHQMLHKWKM 55 (86)
T ss_pred HcCCCHHHHHHHHH--hcccCCHHHHHHHHHHHHHH
Confidence 58999999999874 45678898999999999974
No 16
>PF13208 TerB-N: TerB-N
Probab=47.46 E-value=45 Score=27.05 Aligned_cols=52 Identities=23% Similarity=0.312 Sum_probs=39.7
Q ss_pred CcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhh
Q 031818 8 DMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYS 62 (152)
Q Consensus 8 DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys 62 (152)
+-.++|--|=.||.+|.+.--+|.+=|.+|..+|. .+ ++..-++.++|+-|+
T Consensus 78 ~~~~sYvfLy~YeLe~~igvd~~~~~~~~l~~~~~-~~--~~~~~~l~~y~~~w~ 129 (211)
T PF13208_consen 78 DTSISYVFLYFYELERRIGVDSPAEGYPKLREEVE-RY--RERDPKLDRYFRQWL 129 (211)
T ss_pred CCCCchHHHHHHHHHHHhcccChHHHHHHHHHHHH-HH--HhhhhhHHHHHHHHH
Confidence 56789999999999999999999999999999986 45 233333444454443
No 17
>PF14769 CLAMP: Flagellar C1a complex subunit C1a-32
Probab=46.33 E-value=69 Score=23.11 Aligned_cols=16 Identities=19% Similarity=0.488 Sum_probs=12.9
Q ss_pred cCcCCCHHHHHHHHHH
Q 031818 7 VDMGMTYEELSVYGRL 22 (152)
Q Consensus 7 ~DMGMTY~ELd~~grL 22 (152)
.++|+|.+.++.+..|
T Consensus 8 ~~~~fs~~q~s~~~~i 23 (101)
T PF14769_consen 8 KEQGFSWEQTSAFLSI 23 (101)
T ss_pred hhCCCCHHHHHHHHHH
Confidence 3689999999987664
No 18
>PF08111 Pea-VEAacid: Pea-VEAacid family; InterPro: IPR012593 This family consists of the PEA-VEAacid neuropeptides family. These neuropeptides are isolated from the abdominal perisympathetic organs of the American cockroach. These peptides are found together with Pea-YLS-amide and Pea-SKNacid, giving a unique neuropeptide pattern in abdominal perisympathetic organs. The functions of these neuropeptides are unknown [].; GO: 0005184 neuropeptide hormone activity, 0007218 neuropeptide signaling pathway, 0005576 extracellular region
Probab=40.67 E-value=12 Score=19.63 Aligned_cols=12 Identities=50% Similarity=0.844 Sum_probs=9.9
Q ss_pred cCCCccccccCC
Q 031818 70 VLTPSYHAESYS 81 (152)
Q Consensus 70 ~ltPSfH~e~Ys 81 (152)
++||.-|.++|-
T Consensus 2 tltpgshvdsyv 13 (15)
T PF08111_consen 2 TLTPGSHVDSYV 13 (15)
T ss_pred cccCccchhhhc
Confidence 578999999883
No 19
>PF06526 DUF1107: Protein of unknown function (DUF1107); InterPro: IPR009491 This family consists of several short, hypothetical bacterial proteins of unknown function.; PDB: 2JRO_A.
Probab=38.75 E-value=20 Score=25.31 Aligned_cols=15 Identities=40% Similarity=0.744 Sum_probs=11.5
Q ss_pred CCChHHHHHHHHHHH
Q 031818 44 RLTPSEVAEKVKHFF 58 (152)
Q Consensus 44 ~~sp~eia~kVkrFF 58 (152)
.+.|.+||..||.||
T Consensus 6 ~Y~P~~IAk~Vk~lF 20 (64)
T PF06526_consen 6 RYRPRQIAKYVKTLF 20 (64)
T ss_dssp S--HHHHHHHHHHH-
T ss_pred ccCHHHHHHHHHHHc
Confidence 589999999999999
No 20
>cd08804 Death_ank2 Death domain of Ankyrin-2. Death Domain (DD) of Ankyrin-2 (ANK-2) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-2, also called ankyrin-B (for broadly expressed), is required for proper function of the Na/Ca ion exchanger-1 in cardiomyocytes, and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. Human ANK-2 is associated with "Ankyrin-B syndrome", an atypical arrythmia disorder with risk of sudden cardiac death. It also plays key roles in the brain and striated muscle. Loss of ANK-2 is associated with significant nervous system defects and sarcomere disorganization. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other
Probab=37.77 E-value=50 Score=23.43 Aligned_cols=14 Identities=14% Similarity=0.223 Sum_probs=12.5
Q ss_pred CcCCCHHHHHHHHH
Q 031818 8 DMGMTYEELSVYGR 21 (152)
Q Consensus 8 DMGMTY~ELd~~gr 21 (152)
+||||+.+|+.|..
T Consensus 24 ~Lg~se~dI~~i~~ 37 (84)
T cd08804 24 ELDFTEEQIHQIRI 37 (84)
T ss_pred HcCCCHHHHHHHHH
Confidence 69999999998877
No 21
>PRK14600 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=37.63 E-value=81 Score=25.70 Aligned_cols=28 Identities=18% Similarity=0.102 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHhhhccChHHHHHHHH
Q 031818 11 MTYEELSVYGRLRKIFHCGPVSMFKNLC 38 (152)
Q Consensus 11 MTY~ELd~~grLrk~~k~GP~smf~~L~ 38 (152)
.|.+|.+.|..|.++.+.||-.-..-|.
T Consensus 64 ~~~~Er~lF~~LisV~GIGpK~Al~iLs 91 (186)
T PRK14600 64 LNREEQDCLRMLVKVSGVNYKTAMSILS 91 (186)
T ss_pred CCHHHHHHHHHHhCcCCcCHHHHHHHHc
Confidence 3779999999999999999988776664
No 22
>cd08311 Death_p75NR Death domain of p75 Neurotophin Receptor. Death Domain (DD) found in p75 neurotrophin receptor (p75NTR, NGFR, TNFRSF16). p75NTR binds members of the neurotrophin (NT) family including nerve growth factor (NGF), brain-derived neurotrophic factor (BDNF), and NT3, among others. It contains an NT-binding extracellular region that bears four cysteine-rich repeats, a transmembrane domain, and an intracellular DD. p75NTR plays roles in the immune, vascular, and nervous systems, and has been shown to promote cell death or survival, and to induce neurite outgrowth or collapse depending on its ligands and co-receptors. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptor
Probab=37.53 E-value=47 Score=23.49 Aligned_cols=28 Identities=29% Similarity=0.585 Sum_probs=21.8
Q ss_pred CcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCC
Q 031818 8 DMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGA 43 (152)
Q Consensus 8 DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~ 43 (152)
.||++|.+++.|.+- + +.-..|+..|..
T Consensus 24 ~LG~~~~~I~~i~~~-------~-~p~~~lL~~W~~ 51 (77)
T cd08311 24 ELGYEDEAIDTFGRE-------E-SPVRTLLADWSA 51 (77)
T ss_pred HcCCCHHHHHHHHcC-------h-hHHHHHHHHHHH
Confidence 699999999999852 1 556778888874
No 23
>cd08803 Death_ank3 Death domain of Ankyrin-3. Death Domain (DD) of the human protein ankyrin-3 (ANK-3) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-3, also called anykyrin-G (for general or giant), is found in neurons and at least one splice variant has been shown to be essential for propagation of action potentials as a binding partner to neurofascin and voltage-gated sodium channels. It is required for maintaining axo-dendritic polarity, and may be a genetic risk factor associated with bipolar disorder. ANK-3 may also play roles in other cell types. Mutations affecting ANK-3 pathways for Na channel localization are associated with Brugada syndrome, a potentially fata arrythmia. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=36.21 E-value=68 Score=23.00 Aligned_cols=33 Identities=9% Similarity=0.119 Sum_probs=20.9
Q ss_pred CcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCC
Q 031818 8 DMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGA 43 (152)
Q Consensus 8 DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~ 43 (152)
+||+||.+|+.|.. ...-+|.+=-..|+..|..
T Consensus 24 eLg~s~~dI~~i~~---e~p~~~~~q~~~lL~~W~~ 56 (84)
T cd08803 24 ELNFSVDEINQIRV---ENPNSLIAQSFMLLKKWVT 56 (84)
T ss_pred HcCCCHHHHHHHHH---hCCCCHHHHHHHHHHHHHH
Confidence 79999999999832 2233333333566677753
No 24
>COG4703 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.64 E-value=16 Score=26.48 Aligned_cols=33 Identities=30% Similarity=0.543 Sum_probs=27.0
Q ss_pred ccCCCCCCCCcccccccCCCCchhhhHHHHHHHHh
Q 031818 78 ESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKEL 112 (152)
Q Consensus 78 e~YspDdnrfDlRpfly~~~~~~qf~~id~~~~~~ 112 (152)
-+||+|++-|-||-+==+. .++|..||-..-+|
T Consensus 37 V~ys~~~e~F~lr~~~~~e--~y~FD~IDlvaiEI 69 (74)
T COG4703 37 VKYSEDNETFELRDVEDRE--KYPFDDIDLVAIEI 69 (74)
T ss_pred EEecCCCceEEEEEcccCc--cCccccccchhHHH
Confidence 4799999999999876666 59999999776544
No 25
>PRK14604 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=33.93 E-value=1.1e+02 Score=25.15 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHhhhccChHHHHHHHH
Q 031818 11 MTYEELSVYGRLRKIFHCGPVSMFKNLC 38 (152)
Q Consensus 11 MTY~ELd~~grLrk~~k~GP~smf~~L~ 38 (152)
.|-+|.+.|..|.++.+.||-.-..-|.
T Consensus 64 ~~~~Er~lF~~Li~V~GIGpK~Al~iLs 91 (195)
T PRK14604 64 STPAQRQLFELLIGVSGVGPKAALNLLS 91 (195)
T ss_pred CCHHHHHHHHHHhCcCCcCHHHHHHHHc
Confidence 3678999999999999999988777664
No 26
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=33.49 E-value=1.1e+02 Score=24.97 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHhhhccChHHHHHHHH
Q 031818 11 MTYEELSVYGRLRKIFHCGPVSMFKNLC 38 (152)
Q Consensus 11 MTY~ELd~~grLrk~~k~GP~smf~~L~ 38 (152)
.|.+|.+.|..|-++.+.||-.-..-|.
T Consensus 64 ~~~~Er~lF~~Li~V~GIGpK~AL~iLs 91 (188)
T PRK14606 64 SNERKKELFLSLTKVSRLGPKTALKIIS 91 (188)
T ss_pred CCHHHHHHHHHHhccCCccHHHHHHHHc
Confidence 3679999999999999999988776663
No 27
>PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=32.67 E-value=1.1e+02 Score=25.38 Aligned_cols=27 Identities=22% Similarity=0.301 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHhhhccChHHHHHHHH
Q 031818 12 TYEELSVYGRLRKIFHCGPVSMFKNLC 38 (152)
Q Consensus 12 TY~ELd~~grLrk~~k~GP~smf~~L~ 38 (152)
|-+|...|..|-++.+.||-.-..-|.
T Consensus 64 t~~Er~lF~~LisVsGIGPK~ALaILs 90 (196)
T PRK13901 64 NSSEREVFEELIGVDGIGPRAALRVLS 90 (196)
T ss_pred CHHHHHHHHHHhCcCCcCHHHHHHHHc
Confidence 678999999999999999988776663
No 28
>PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=32.09 E-value=1.2e+02 Score=24.82 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHhhhccChHHHHHHHH
Q 031818 12 TYEELSVYGRLRKIFHCGPVSMFKNLC 38 (152)
Q Consensus 12 TY~ELd~~grLrk~~k~GP~smf~~L~ 38 (152)
|-+|.+.|..|-++.+.||-.-..-|.
T Consensus 65 ~~~Er~lF~~Li~VsGIGpK~Al~ILs 91 (183)
T PRK14601 65 DKDEQKMFEMLLKVNGIGANTAMAVCS 91 (183)
T ss_pred CHHHHHHHHHHhccCCccHHHHHHHHc
Confidence 678999999999999999988776663
No 29
>PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=30.62 E-value=1.2e+02 Score=24.74 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHhhhccChHHHHHHHH
Q 031818 12 TYEELSVYGRLRKIFHCGPVSMFKNLC 38 (152)
Q Consensus 12 TY~ELd~~grLrk~~k~GP~smf~~L~ 38 (152)
|.+|.+.|..|..+.+.||-.-..-|.
T Consensus 64 ~~~Er~lF~~L~~V~GIGpK~AL~iLs 90 (197)
T PRK14603 64 DEDSLELFELLLGVSGVGPKLALALLS 90 (197)
T ss_pred CHHHHHHHHHHhCcCCcCHHHHHHHHc
Confidence 678999999999999999988777664
No 30
>KOG2459 consensus GPI transamidase complex, GPI17/PIG-S component, involved in glycosylphosphatidylinositol anchor biosynthesis [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=28.12 E-value=1.1e+02 Score=29.46 Aligned_cols=54 Identities=22% Similarity=0.249 Sum_probs=42.5
Q ss_pred cccCcCCCHHHHHHHHHHHhhhccChH----HHHHHHHHHhCCCCChHHHHHHHHHHH
Q 031818 5 DEVDMGMTYEELSVYGRLRKIFHCGPV----SMFKNLCYRWGARLTPSEVAEKVKHFF 58 (152)
Q Consensus 5 DE~DMGMTY~ELd~~grLrk~~k~GP~----smf~~L~~~w~~~~sp~eia~kVkrFF 58 (152)
|-.++|.++=|++++.|.|.++.|--- .-.-+|++.-..-..|+||++.|++=.
T Consensus 397 ~~~~~~~~~we~drllr~~~v~nl~~AssTL~SL~kL~~qis~mvI~dEV~~~V~~al 454 (536)
T KOG2459|consen 397 DSPPLGLCQWELDRLLRRRIVENLMTASSTLQSLAKLVQQISNMVIPDEVADRVTRAL 454 (536)
T ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHH
Confidence 455789999999999999999988643 334567777765567999999998754
No 31
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=26.11 E-value=1.1e+02 Score=28.85 Aligned_cols=72 Identities=17% Similarity=0.136 Sum_probs=35.8
Q ss_pred CCcccCcCCCHHHHHH---HHHHHhhhccC--hHHH---HHHHHH--HhCCC--CChHH--HHHHHHHHHHHhhhccc--
Q 031818 3 QLDEVDMGMTYEELSV---YGRLRKIFHCG--PVSM---FKNLCY--RWGAR--LTPSE--VAEKVKHFFKYYSINRH-- 66 (152)
Q Consensus 3 QTDE~DMGMTY~ELd~---~grLrk~~k~G--P~sm---f~~L~~--~w~~~--~sp~e--ia~kVkrFF~~ys~NrH-- 66 (152)
-|=|.||||-|.-.+. .+.-+.....+ +.+. ...+.+ ..++- .+.+| +-+.+-+.=--++.+||
T Consensus 288 RTVEGDLGmr~sa~~v~e~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~iP~t~eE~~fd~alA~~a~~~a~~RHaG 367 (463)
T TIGR01319 288 RTVEGDLGMRVSAISLGEASAKEKLNKNFADNPADLDACCHYLRHLAAHIDMLPANAEEIKFDEALAGLATDMAMERHAG 367 (463)
T ss_pred ceeecCCcceeehhHHHHhhchHHHHHHhcccchhhHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3558999999944444 33322222222 2222 223332 33321 23333 23344455567789999
Q ss_pred -ccccCCCc
Q 031818 67 -KMTVLTPS 74 (152)
Q Consensus 67 -Krt~ltPS 74 (152)
++.++||-
T Consensus 368 ~~~~~~tp~ 376 (463)
T TIGR01319 368 TIEEMCTCM 376 (463)
T ss_pred ccceeecCc
Confidence 55665554
No 32
>TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=25.99 E-value=1.7e+02 Score=23.70 Aligned_cols=40 Identities=25% Similarity=0.377 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHH
Q 031818 11 MTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVK 55 (152)
Q Consensus 11 MTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVk 55 (152)
.|.+|.+.|..|.++.+.||-....-|. .++++++.+.|.
T Consensus 63 ~~~~Er~lF~~L~~V~GIGpK~Al~iL~-----~~~~~el~~aI~ 102 (191)
T TIGR00084 63 NTLEERELFKELIKVNGVGPKLALAILS-----NMSPEEFVYAIE 102 (191)
T ss_pred CCHHHHHHHHHHhCCCCCCHHHHHHHHh-----cCCHHHHHHHHH
Confidence 3678999999999999999998865543 235556655554
No 33
>PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=25.41 E-value=1.5e+02 Score=24.30 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHhhhccChHHHHHHHHH
Q 031818 12 TYEELSVYGRLRKIFHCGPVSMFKNLCY 39 (152)
Q Consensus 12 TY~ELd~~grLrk~~k~GP~smf~~L~~ 39 (152)
|-+|.+.|..|-++.+.||..-..-|..
T Consensus 66 ~~~Er~lF~~Li~V~GIGpK~Al~iLs~ 93 (203)
T PRK14602 66 TWDERQTFIVLISISKVGAKTALAILSQ 93 (203)
T ss_pred CHHHHHHHHHHhCCCCcCHHHHHHHHhh
Confidence 6689999999999999999988877753
No 34
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=25.30 E-value=3.4e+02 Score=24.29 Aligned_cols=55 Identities=16% Similarity=0.088 Sum_probs=33.9
Q ss_pred CCCHHHHHH-HHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHH--HHHhhhcccc
Q 031818 10 GMTYEELSV-YGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHF--FKYYSINRHK 67 (152)
Q Consensus 10 GMTY~ELd~-~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrF--F~~ys~NrHK 67 (152)
+||-+||.. +..+-+.....|..++..+...+. ....+...++.+ +..+.+++||
T Consensus 415 ~~s~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 472 (472)
T TIGR03471 415 HLSREEIFDGVERFYKRFYFRPKKIGRIVREMLF---DWDMMKRRLREGVEFFQFLRKRKK 472 (472)
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHHhhcC
Confidence 467777765 555556667788888887766654 345544444432 3346777776
No 35
>PF04928 PAP_central: Poly(A) polymerase central domain; InterPro: IPR007012 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs. Poly(A) polymerase, the enzyme at the heart of the polyadenylation machinery, is a template-independent RNA polymerase which specifically incorporates ATP at the 3' end of mRNA. The crystal structure of bovine poly(A) polymerase bound to an ATP analog at 2.5 A resolutio has been determined []. The structure revealed expected and unexpected similarities to other proteins. As expected, the catalytic domain of poly(A) polymerase shares substantial structural homology with other nucleotidyl transferases such as DNA polymerase beta and kanamycin transferase. The central domain of Poly(A) polymerase shares structural similarity with the allosteric activity domain of ribonucleotide reductase R1, which comprises a four-helix bundle and a three-stranded mixed beta-sheet. Even though the two enzymes bind ATP, the ATP-recognition motifs are different.; GO: 0004652 polynucleotide adenylyltransferase activity, 0006351 transcription, DNA-dependent; PDB: 1Q79_A 1Q78_A 1F5A_A 2O1P_A 2HHP_A 3C66_B 1FA0_A 2Q66_A.
Probab=23.65 E-value=81 Score=26.93 Aligned_cols=63 Identities=21% Similarity=0.256 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhhhcccccccC-CCccccc----cCCCCCCCCc---ccccc---cCCCC------chhhhHHHHHHHH
Q 031818 49 EVAEKVKHFFKYYSINRHKMTVL-TPSYHAE----SYSPEDNRFD---LRQFL---YNARW------PYQFRKIDELVKE 111 (152)
Q Consensus 49 eia~kVkrFF~~ys~NrHKrt~l-tPSfH~e----~YspDdnrfD---lRpfl---y~~~~------~~qf~~id~~~~~ 111 (152)
....-|.+||.+||.=.|+.-+. .|.++.. .-+|..|+.| +=|-| ||... ...++.|-+..++
T Consensus 153 ~~~~ll~~FF~~ys~W~W~~PV~l~~~~~~~~~~~~w~p~~~~~~~~~~MpIiTP~yP~~Nst~nVt~st~~~i~~Ef~r 232 (254)
T PF04928_consen 153 SPSTLLSRFFQIYSQWDWPNPVVLDPIEDGPLGFKVWNPRLYPRDRRHLMPIITPAYPSMNSTYNVTRSTLRIIREEFQR 232 (254)
T ss_dssp -HHHHHHHHHHHHHCS-TTS-EESS-----SSSCGS--TTT-HHHHC-SS-EE-SSSS--BTTTT--HHHHHHHHHHHHH
T ss_pred cccchHHHHHHHhcCCCCCCceeecccccCcccccCCCCCCCCCCcccceeEccCCCCccccccccCHHHHHHHHHHHHH
Confidence 34468899999999999998654 4665544 4455544333 33333 33222 3456666555544
No 36
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=23.47 E-value=84 Score=27.65 Aligned_cols=47 Identities=23% Similarity=0.430 Sum_probs=34.5
Q ss_pred CCChHHHHHHHHHHHHHhhhcccccccCCCccccccCC-------CCCCCCcccccccCCCC
Q 031818 44 RLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYS-------PEDNRFDLRQFLYNARW 98 (152)
Q Consensus 44 ~~sp~eia~kVkrFF~~ys~NrHKrt~ltPSfH~e~Ys-------pDdnrfDlRpfly~~~~ 98 (152)
++++.+++++|..+| +.++.+. ...|..+|+ --|.=||.| ||=||.|
T Consensus 140 ~l~~~~Lr~~i~~~~---~~~~~~~----l~v~i~SFGfK~GiP~dAD~VfDvR-fLpNP~y 193 (284)
T PF03668_consen 140 NLSVHQLRERIRERF---GGDKESR----LTVTIQSFGFKYGIPPDADLVFDVR-FLPNPYY 193 (284)
T ss_pred CCCHHHHHHHHHHHh---ccCCCCc----eEEEEEEeccccCCCCCCCEEEEcC-cCCCCCC
Confidence 689999999999998 5554332 334555554 136779999 9999998
No 37
>PF13333 rve_2: Integrase core domain
Probab=22.79 E-value=1.2e+02 Score=19.24 Aligned_cols=27 Identities=26% Similarity=0.644 Sum_probs=19.2
Q ss_pred CChHHHHHHHHHHHHHhhhcccccccCCC
Q 031818 45 LTPSEVAEKVKHFFKYYSINRHKMTVLTP 73 (152)
Q Consensus 45 ~sp~eia~kVkrFF~~ys~NrHKrt~ltP 73 (152)
.+-+|+..-|..+..+| |+....-+||
T Consensus 18 ~t~eel~~~I~~YI~~y--N~~Rl~~lsP 44 (52)
T PF13333_consen 18 KTREELKQAIDEYIDYY--NNERLKGLSP 44 (52)
T ss_pred chHHHHHHHHHHHHHHh--ccCCCCCcCH
Confidence 47889999999999988 5544333344
No 38
>PF00531 Death: Death domain; InterPro: IPR000488 The death domain (DD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DD is related in sequence and structure to the death effector domain (DED, see IPR001875 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. DD bind each other forming oligomers. Mammals have numerous and diverse DD-containing proteins []. Within these proteins, the DD domains can be found in combination with other domains, including: CARDs, DEDs, ankyrin repeats (IPR002110 from INTERPRO), caspase-like folds, kinase domains, leucine zippers (IPR002158 from INTERPRO), leucine-rich repeats (LRR) (IPR001611 from INTERPRO), TIR domains (IPR000157 from INTERPRO), and ZU5 domains (IPR000906 from INTERPRO) []. Some DD-containing proteins are involved in the regulation of apoptosis and inflammation through their activation of caspases and NF-kappaB, which typically involves interactions with TNF (tumour necrosis factor) cytokine receptors [, ]. In humans, eight of the over 30 known TNF receptors contain DD in their cytoplasmic tails; several of these TNF receptors use caspase activation as a signalling mechanism. The DD mediates self-association of these receptors, thus giving the signal to downstream events that lead to apoptosis. Other DD-containing proteins, such as ankyrin, MyD88 and pelle, are probably not directly involved in cell death signalling. DD-containing proteins also have links to innate immunity, communicating with Toll family receptors through bipartite adapter proteins such as MyD88 [].; GO: 0005515 protein binding, 0007165 signal transduction; PDB: 3OQ9_L 3EZQ_F 1E41_A 1E3Y_A 2GF5_A 2OF5_L 3EWV_E 3G5B_A 3MOP_L 2A9I_A ....
Probab=22.05 E-value=2.1e+02 Score=18.68 Aligned_cols=31 Identities=13% Similarity=0.199 Sum_probs=20.4
Q ss_pred CcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhC
Q 031818 8 DMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWG 42 (152)
Q Consensus 8 DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~ 42 (152)
-||+|+.+|+.|.. ..-+..+--..++..|.
T Consensus 21 ~Lg~~~~~i~~i~~----~~~~~~~~~~~~L~~W~ 51 (83)
T PF00531_consen 21 KLGLSESEIENIEE----ENPDLREQTYEMLQRWR 51 (83)
T ss_dssp HTTS-HHHHHHHHH----HSTSHHHHHHHHHHHHH
T ss_pred HhCcCHHHHHHHHH----hCCChHHHHHHHHHHHH
Confidence 48999999999888 22125555566666665
No 39
>cd08793 Death_IRAK4 Death domain of Interleukin-1 Receptor-Associated Kinase 4. Death Domain (DD) of Interleukin-1 Receptor-Associated Kinase 4 (IRAK4). IRAKs are essential components of innate immunity and inflammation in mammals and other vertebrates. They are involved in signal transduction pathways involving IL-1 and IL-18 receptors, Toll-like receptors, nuclear factor-kappaB, and mitogen-activated protein kinases. IRAKs contain an N-terminal DD domain and a C-terminal kinase domain. IRAK4 is an active kinase that is also involved in T-cell receptor signaling pathways, implying that it may function in acquired immunity and not just in innate immunity. It is known as the master IRAK member because its absence strongly impairs TLR- and IL-1-mediated signaling and innate immune defenses, while the absence of other IRAK proteins only shows slight effects. IRAK4-deficient patients have impaired inflammatory responses and recurrent life-threatening infections. DDs are protein-protein int
Probab=21.39 E-value=3.7e+02 Score=20.35 Aligned_cols=40 Identities=18% Similarity=0.321 Sum_probs=27.1
Q ss_pred CcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCC-CCChHHHH
Q 031818 8 DMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGA-RLTPSEVA 51 (152)
Q Consensus 8 DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~-~~sp~eia 51 (152)
|-|.+|.|+..|++...+ +.+|. ..|+..|+. +.+..++.
T Consensus 37 ~~~y~~~ei~~ie~~~~~-g~SPT---~~LL~dWgt~N~TV~~L~ 77 (100)
T cd08793 37 DPRYSQFHIRRFEALVQQ-GKSPT---CELLFDWGTTNCTVGDLV 77 (100)
T ss_pred CCCCCHHHHHHHHHHHHc-CCChH---HHHHHHHccCCCcHHHHH
Confidence 447899999999886666 56665 467889953 44444443
No 40
>PHA02099 hypothetical protein
Probab=21.12 E-value=32 Score=25.27 Aligned_cols=11 Identities=45% Similarity=0.996 Sum_probs=9.8
Q ss_pred CccccccCCCC
Q 031818 73 PSYHAESYSPE 83 (152)
Q Consensus 73 PSfH~e~YspD 83 (152)
--||+|.|+||
T Consensus 46 iifha~gy~p~ 56 (84)
T PHA02099 46 IVFHAEGYNPD 56 (84)
T ss_pred EEEEcCCCCHH
Confidence 57999999997
No 41
>PF13941 MutL: MutL protein
Probab=20.92 E-value=1e+02 Score=28.76 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=14.9
Q ss_pred CcccCcCCCHHHHHHHHH
Q 031818 4 LDEVDMGMTYEELSVYGR 21 (152)
Q Consensus 4 TDE~DMGMTY~ELd~~gr 21 (152)
|=|.||||-|.-.+.+..
T Consensus 286 TVEGDLGmr~sa~~l~e~ 303 (457)
T PF13941_consen 286 TVEGDLGMRYSAPNLLEA 303 (457)
T ss_pred heeccccceechHHHHHh
Confidence 458999999998887765
No 42
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.78 E-value=95 Score=23.81 Aligned_cols=15 Identities=33% Similarity=0.534 Sum_probs=10.0
Q ss_pred CcccCcCCCHHHHHH
Q 031818 4 LDEVDMGMTYEELSV 18 (152)
Q Consensus 4 TDE~DMGMTY~ELd~ 18 (152)
+-|.=-||||+|-..
T Consensus 68 aRE~VyGMpy~eWka 82 (104)
T COG3492 68 AREIVYGMPYAEWKA 82 (104)
T ss_pred HHHHHhCCCHHHHHH
Confidence 334556899988764
No 43
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=20.66 E-value=1.1e+02 Score=25.43 Aligned_cols=77 Identities=23% Similarity=0.320 Sum_probs=48.2
Q ss_pred cCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhcccccccC--CCccccccCCCCC
Q 031818 7 VDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVL--TPSYHAESYSPED 84 (152)
Q Consensus 7 ~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~l--tPSfH~e~YspDd 84 (152)
.|+|...-.=..-.. -..+=.|+-=+..|...|. ..+|+|++.-+.+..+.|...-++..++ =-||=|
T Consensus 10 GDgGw~~~d~~~a~~--l~~~G~~VvGvdsl~Yfw~-~rtP~~~a~Dl~~~i~~y~~~w~~~~vvLiGYSFGA------- 79 (192)
T PF06057_consen 10 GDGGWRDLDKQIAEA--LAKQGVPVVGVDSLRYFWS-ERTPEQTAADLARIIRHYRARWGRKRVVLIGYSFGA------- 79 (192)
T ss_pred CCCCchhhhHHHHHH--HHHCCCeEEEechHHHHhh-hCCHHHHHHHHHHHHHHHHHHhCCceEEEEeecCCc-------
Confidence 366665222222222 3334456666777889997 6899999999999998876654433332 144433
Q ss_pred CCCcccccccCC
Q 031818 85 NRFDLRQFLYNA 96 (152)
Q Consensus 85 nrfDlRpfly~~ 96 (152)
|.=||+||-
T Consensus 80 ---DvlP~~~nr 88 (192)
T PF06057_consen 80 ---DVLPFIYNR 88 (192)
T ss_pred ---hhHHHHHhh
Confidence 567887774
No 44
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=20.24 E-value=2.5e+02 Score=18.06 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=26.1
Q ss_pred HHHHHhhhccChHHHHHHHHH-HhCCCCChHHHHHHH
Q 031818 19 YGRLRKIFHCGPVSMFKNLCY-RWGARLTPSEVAEKV 54 (152)
Q Consensus 19 ~grLrk~~k~GP~smf~~L~~-~w~~~~sp~eia~kV 54 (152)
-|.|-...+|+|-.-|..|.. .-..+.+..+||+.|
T Consensus 19 kgiLm~~~g~~e~~A~~~Lr~~Am~~~~~l~~vA~~i 55 (56)
T PF03861_consen 19 KGILMARYGLSEDEAYRLLRRQAMRRRRSLADVAEEI 55 (56)
T ss_dssp HHHHHHHHT--HHHHHHHHHHHHHHCTS-HHHHHHHH
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 577888899999999999986 333468899998765
Done!